Citrus Sinensis ID: 031598

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYSLL
Secondary Structure (PSIPRED)
cccccccEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEcEEEEccEEEEEEEEEcccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccccHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEccccccHHHHHHHHHHcccccccccccccEEEEEEEEccccEEEEEEEEccccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccccEEEEccHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MPSRRRTLLKVIILgdsgvgktsLMNQYVNKKFSNqykatigadfltkevqfEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYdvnsmksfdNLNNWREEFLiqaspsdpdnfpfvvlgnkidvdggnsrvvcfgeegssmvclqrkysll
Flexible Loop (DISEMBL)
mpsrrrtllkviilgdsgvgktSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVcfgeegssmvclqrkysll
Low Complexity Region (SEG)
MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYSLL
Disordered region (IsUnstruct)
******TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCL*******
Disordered Region (DISOPRED)
****RRT*LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV***EEG*SMVCLQRKYSL*
Disordered Region (DISEMBL)
MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYSLL
Disordered Region (DISPRO)
**SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRK****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYSLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
Q40787	206	Ras-related protein Rab7	N/A	no	0.878	0.665	0.978	5e-75
P31022	206	Ras-related protein Rab7	N/A	no	0.878	0.665	0.963	7e-75
Q9LS94	206	Ras-related protein RABG3	yes	no	0.878	0.665	0.956	2e-74
Q9XI98	206	Ras-related protein RABG3	no	no	0.878	0.665	0.956	7e-74
O24461	207	Ras-related protein Rab7	N/A	no	0.878	0.661	0.948	1e-72
Q9XER8	207	Ras-related protein Rab7	N/A	no	0.878	0.661	0.941	2e-72
Q9C820	206	Ras-related protein RABG3	no	no	0.878	0.665	0.919	3e-70
P93267	207	Ras-related protein Rab7A	N/A	no	0.955	0.719	0.827	6e-70
Q9LW76	206	Ras-related protein RABG3	no	no	0.878	0.665	0.905	3e-69
Q43463	206	Ras-related protein Rab7	no	no	0.878	0.665	0.839	1e-64

>sp|Q40787|RAB7_CENCI Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2 SV=1

 Score =  279 bits (714), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 134/137 (97%), Positives = 136/137 (99%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           V+LGNK+DVDGGNSRVV
Sbjct: 121 VLLGNKVDVDGGNSRVV 137

Protein transport. Probably involved in vesicular traffic.
Cenchrus ciliaris (taxid: 35872)

>sp|P31022|RAB7_PEA Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1

 Score =  278 bits (712), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 132/137 (96%), Positives = 137/137 (100%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNS+KSFDNLNNWREEFLIQA+PSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSVKSFDNLNNWREEFLIQANPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           VV+GNKID+DGGNSRVV
Sbjct: 121 VVIGNKIDIDGGNSRVV 137

Protein transport. Probably involved in vesicular traffic.

Pisum sativum (taxid: 3888)

>sp|Q9LS94|RAG3F_ARATH Ras-related protein RABG3f OS=Arabidopsis thaliana GN=RABG3F PE=2 SV=1

 Score =  277 bits (708), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 131/137 (95%), Positives = 136/137 (99%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSF+NLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFENLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           V++GNK+DVD GNSRVV
Sbjct: 121 VLIGNKVDVDDGNSRVV 137

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI98|RAG3E_ARATH Ras-related protein RABG3e OS=Arabidopsis thaliana GN=RABG3E PE=2 SV=1

 Score =  275 bits (704), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 131/137 (95%), Positives = 136/137 (99%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNS KSF++LNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSAKSFEDLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           VV+GNKIDVDGG+SRVV
Sbjct: 121 VVIGNKIDVDGGSSRVV 137

Intracellular vesicle trafficking and protein transport. May play a role in adaptation to stress by recylcing macromolecules in specific cellular compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|O24461|RAB7_PRUAR Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1

 Score =  271 bits (693), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/137 (94%), Positives = 134/137 (97%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSF+NLNNWREEFLIQA+PSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           VVLGNKIDVDGGNSRVV
Sbjct: 121 VVLGNKIDVDGGNSRVV 137

Protein transport. Probably involved in vesicular traffic.

Prunus armeniaca (taxid: 36596)

>sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1

 Score =  271 bits (692), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/137 (94%), Positives = 134/137 (97%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQF+DRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DVN MKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           VVLGNK+DVDGGNSRVV
Sbjct: 121 VVLGNKVDVDGGNSRVV 137

Protein transport. Probably involved in vesicular traffic.

Gossypium hirsutum (taxid: 3635)

>sp|Q9C820|RAG3D_ARATH Ras-related protein RABG3d OS=Arabidopsis thaliana GN=RABG3D PE=2 SV=1

 Score =  263 bits (673), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 126/137 (91%), Positives = 131/137 (95%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SRRR LLKVIILGDSGVGKTSLMNQ+VN+KFSNQYKATIGADFLTKEVQ +DR+FTLQ
Sbjct: 1   MSSRRRVLLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           VVLGNK DVDGG SRVV
Sbjct: 121 VVLGNKTDVDGGKSRVV 137

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P93267|RAB7_MESCR Ras-related protein Rab7A OS=Mesembryanthemum crystallinum PE=2 SV=1

 Score =  262 bits (670), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 125/151 (82%), Positives = 137/151 (90%), Gaps = 2/151 (1%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SRRR LLK+IILGDSGVGKTSLMNQ+VNKKFSNQYKATIGADFLTKE+QFEDRLFTLQ
Sbjct: 1   MASRRRKLLKIIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKELQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVL YDVN MKSF++LN WREEFLIQASP+DPDNFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLTYDVNVMKSFESLNRWREEFLIQASPADPDNFPF 120

Query: 121 VVLGNKIDVDGGNSRVVCFGEEGSSMVCLQR 151
           V+LGNKIDVDGG+ RVV   E+ +   C+ +
Sbjct: 121 VLLGNKIDVDGGSGRVV--SEKKAKAWCMSK 149

Protein transport. Probably involved in vesicular traffic.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|Q9LW76|RAG3C_ARATH Ras-related protein RABG3c OS=Arabidopsis thaliana GN=RABG3C PE=2 SV=1

 Score =  259 bits (663), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 124/137 (90%), Positives = 130/137 (94%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SRRR LLKVIILGDSGVGKTSLMNQ+VN+KFSNQYKATIGADFLTKEVQ +DR+FTLQ
Sbjct: 1   MASRRRVLLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV DVN MKSF+NLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVNDVNVMKSFENLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           VVLGNK DVDGG SRVV
Sbjct: 121 VVLGNKTDVDGGKSRVV 137

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q43463|RAB7_SOYBN Ras-related protein Rab7 OS=Glycine max PE=2 SV=1

 Score =  244 bits (624), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/137 (83%), Positives = 124/137 (90%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M  RRRTLLKVI+LGDSGVGKTSLMNQYV+KKFS QYKATIGADF+TKE+Q +DRL TLQ
Sbjct: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSFD L NW EEFL QA+P DP  FPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLENWHEEFLKQANPPDPRAFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           ++LGNKID+DGGNSRVV
Sbjct: 121 ILLGNKIDIDGGNSRVV 137

Protein transport. Probably involved in vesicular traffic.

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
255536817	206	protein with unknown function [Ricinus c	0.878	0.665	0.992	1e-74
224103431	206	predicted protein [Populus trichocarpa]	0.878	0.665	0.985	2e-74
77745448	206	unknown [Solanum tuberosum] gi|78191474|	0.878	0.665	0.978	3e-74
356538781	206	PREDICTED: ras-related protein Rab7-like	0.878	0.665	0.978	4e-74
449465391	206	PREDICTED: ras-related protein Rab7-like	0.878	0.665	0.985	4e-74
408784807	206	small GTP binding protein [Arachis hypog	0.878	0.665	0.970	4e-74
351726788	206	uncharacterized protein LOC100305642 [Gl	0.878	0.665	0.978	4e-74
224080323	206	predicted protein [Populus trichocarpa]	0.878	0.665	0.978	5e-74
297741446	253	unnamed protein product [Vitis vinifera]	0.878	0.541	0.978	6e-74
388507798	206	unknown [Lotus japonicus]	0.878	0.665	0.970	8e-74

>gi|255536817|ref|XP_002509475.1| protein with unknown function [Ricinus communis] gi|223549374|gb|EEF50862.1| protein with unknown function [Ricinus communis]

 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 136/137 (99%), Positives = 137/137 (100%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           VVLGNKIDVDGGNSRVV
Sbjct: 121 VVLGNKIDVDGGNSRVV 137

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103431|ref|XP_002313053.1| predicted protein [Populus trichocarpa] gi|118485510|gb|ABK94609.1| unknown [Populus trichocarpa] gi|222849461|gb|EEE87008.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (723), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 135/137 (98%), Positives = 137/137 (100%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           VVLGNK+DVDGGNSRVV
Sbjct: 121 VVLGNKVDVDGGNSRVV 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77745448|gb|ABB02623.1| unknown [Solanum tuberosum] gi|78191474|gb|ABB29958.1| unknown [Solanum tuberosum]

 Score =  282 bits (721), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 134/137 (97%), Positives = 137/137 (100%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSF+NLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFENLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           VVLGNK+DVDGGNSRVV
Sbjct: 121 VVLGNKVDVDGGNSRVV 137

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538781|ref|XP_003537879.1| PREDICTED: ras-related protein Rab7-like isoform 1 [Glycine max] gi|356538783|ref|XP_003537880.1| PREDICTED: ras-related protein Rab7-like isoform 2 [Glycine max]

 Score =  282 bits (721), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 134/137 (97%), Positives = 137/137 (100%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           VV+GNKID+DGGNSRVV
Sbjct: 121 VVIGNKIDIDGGNSRVV 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465391|ref|XP_004150411.1| PREDICTED: ras-related protein Rab7-like [Cucumis sativus] gi|449508065|ref|XP_004163207.1| PREDICTED: ras-related protein Rab7-like [Cucumis sativus] gi|34484308|gb|AAQ72787.1| putative GTP-binding protein [Cucumis sativus]

 Score =  282 bits (721), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 135/137 (98%), Positives = 137/137 (100%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           VVLGNK+DVDGGNSRVV
Sbjct: 121 VVLGNKVDVDGGNSRVV 137

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|408784807|gb|AFU91386.1| small GTP binding protein [Arachis hypogaea]

 Score =  282 bits (721), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 133/137 (97%), Positives = 137/137 (100%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           VV+GNK+D+DGGNSRVV
Sbjct: 121 VVIGNKVDIDGGNSRVV 137

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726788|ref|NP_001238418.1| uncharacterized protein LOC100305642 [Glycine max] gi|255626165|gb|ACU13427.1| unknown [Glycine max]

 Score =  282 bits (721), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 134/137 (97%), Positives = 137/137 (100%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           VV+GNKID+DGGNSRVV
Sbjct: 121 VVIGNKIDIDGGNSRVV 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080323|ref|XP_002306097.1| predicted protein [Populus trichocarpa] gi|118481635|gb|ABK92759.1| unknown [Populus trichocarpa] gi|222849061|gb|EEE86608.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (720), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 134/137 (97%), Positives = 137/137 (100%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFD+LNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDHLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           VVLGNK+DVDGGNSRVV
Sbjct: 121 VVLGNKVDVDGGNSRVV 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741446|emb|CBI32577.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (719), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 134/137 (97%), Positives = 136/137 (99%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 48  MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 107

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 108 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 167

Query: 121 VVLGNKIDVDGGNSRVV 137
           VVLGNK+DVDGGNSRVV
Sbjct: 168 VVLGNKVDVDGGNSRVV 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507798|gb|AFK41965.1| unknown [Lotus japonicus]

 Score =  281 bits (718), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 133/137 (97%), Positives = 137/137 (100%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           VV+GNKID+DGGNSRVV
Sbjct: 121 VVIGNKIDIDGGNSRVV 137

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
TAIR|locus:2094029	206	RAB7B "RAB GTPase homolog G3F"	0.878	0.665	0.956	2.1e-68
TAIR|locus:2010257	206	RABG3E "RAB GTPase homolog G3E	0.878	0.665	0.956	7.2e-68
TAIR|locus:2018124	206	RABG3d "RAB GTPase homolog G3D	0.878	0.665	0.919	4.1e-65
TAIR|locus:2093437	206	RABG3c "RAB GTPase homolog G3C	0.878	0.665	0.905	9.7e-64
TAIR|locus:2199716	203	RABG3B "RAB GTPase homolog G3B	0.878	0.674	0.817	1.2e-58
DICTYBASE|DDB_G0269236	203	rab7A "Rab GTPase" [Dictyostel	0.865	0.665	0.795	2.5e-56
ZFIN|ZDB-GENE-040927-2	205	zgc:100918 "zgc:100918" [Danio	0.833	0.634	0.823	2.3e-55
UNIPROTKB|E1C0F3	207	RAB7A "Uncharacterized protein	0.833	0.628	0.815	6.1e-55
UNIPROTKB|F1MJQ1	207	RAB7A "Ras-related protein Rab	0.833	0.628	0.815	6.1e-55
UNIPROTKB|Q3T0F5	207	RAB7A "Ras-related protein Rab	0.833	0.628	0.815	6.1e-55

TAIR|locus:2094029 RAB7B "RAB GTPase homolog G3F" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 131/137 (95%), Positives = 136/137 (99%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSF+NLNNWREEFLIQASPSDP+NFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFENLNNWREEFLIQASPSDPENFPF 120

Query:   121 VVLGNKIDVDGGNSRVV 137
             V++GNK+DVD GNSRVV
Sbjct:   121 VLIGNKVDVDDGNSRVV 137

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2010257 RABG3E "RAB GTPase homolog G3E" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 131/137 (95%), Positives = 136/137 (99%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDVNS KSF++LNNWREEFLIQASPSDP+NFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSAKSFEDLNNWREEFLIQASPSDPENFPF 120

Query:   121 VVLGNKIDVDGGNSRVV 137
             VV+GNKIDVDGG+SRVV
Sbjct:   121 VVIGNKIDVDGGSSRVV 137

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2018124 RABG3d "RAB GTPase homolog G3D" [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 126/137 (91%), Positives = 131/137 (95%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M SRRR LLKVIILGDSGVGKTSLMNQ+VN+KFSNQYKATIGADFLTKEVQ +DR+FTLQ
Sbjct:     1 MSSRRRVLLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query:   121 VVLGNKIDVDGGNSRVV 137
             VVLGNK DVDGG SRVV
Sbjct:   121 VVLGNKTDVDGGKSRVV 137

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2093437 RABG3c "RAB GTPase homolog G3C" [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 124/137 (90%), Positives = 130/137 (94%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M SRRR LLKVIILGDSGVGKTSLMNQ+VN+KFSNQYKATIGADFLTKEVQ +DR+FTLQ
Sbjct:     1 MASRRRVLLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLV DVN MKSF+NLNNWREEFLIQASPSDP+NFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVNDVNVMKSFENLNNWREEFLIQASPSDPENFPF 120

Query:   121 VVLGNKIDVDGGNSRVV 137
             VVLGNK DVDGG SRVV
Sbjct:   121 VVLGNKTDVDGGKSRVV 137

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2199716 RABG3B "RAB GTPase homolog G3B" [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 112/137 (81%), Positives = 125/137 (91%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M +RRRTLLKVIILGDSGVGKTSLMNQYVN KFS QYKATIGADF+TKE+Q +DRL TLQ
Sbjct:     1 MSTRRRTLLKVIILGDSGVGKTSLMNQYVNNKFSQQYKATIGADFVTKELQIDDRLVTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDVN +KSF++L+NW  EFL +ASP DP  FPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLTRASPRDPMAFPF 120

Query:   121 VVLGNKIDVDGGNSRVV 137
             ++LGNK+D+DGGNSRVV
Sbjct:   121 ILLGNKVDIDGGNSRVV 137

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0010089 "xylem development" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0010623 "developmental programmed cell death" evidence=IMP

GO:0048102 "autophagic cell death" evidence=IMP

GO:0016192 "vesicle-mediated transport" evidence=RCA

DICTYBASE|DDB_G0269236 rab7A "Rab GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 109/137 (79%), Positives = 124/137 (90%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M ++++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE+  +DR+ T+Q
Sbjct:     1 MATKKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVL YDVN  K+F+NL++WR+EFLIQA P DPDNFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPF 120

Query:   121 VVLGNKIDVDGGNSRVV 137
             VVLGNKID++  N RVV
Sbjct:   121 VVLGNKIDLE--NQRVV 135

GO:0005615 "extracellular space" evidence=IDA

GO:0032010 "phagolysosome" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0006909 "phagocytosis" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-040927-2 zgc:100918 "zgc:100918" [Danio rerio (taxid:7955)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 107/130 (82%), Positives = 119/130 (91%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct:     1 MASRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDV +  +F  L++WR+EFLIQASP DP+NFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query:   121 VVLGNKIDVD 130
             VVLGNKID++
Sbjct:   121 VVLGNKIDLE 130

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E1C0F3 RAB7A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 106/130 (81%), Positives = 119/130 (91%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct:     1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query:   121 VVLGNKIDVD 130
             VVLGNKID++
Sbjct:   121 VVLGNKIDLE 130

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006622 "protein targeting to lysosome" evidence=IEA

GO:0007174 "epidermal growth factor catabolic process" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0045022 "early endosome to late endosome transport" evidence=IEA

UNIPROTKB|F1MJQ1 RAB7A "Ras-related protein Rab-7a" [Bos taurus (taxid:9913)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 106/130 (81%), Positives = 119/130 (91%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct:     1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query:   121 VVLGNKIDVD 130
             VVLGNKID++
Sbjct:   121 VVLGNKIDLE 130

GO:0045022 "early endosome to late endosome transport" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0007174 "epidermal growth factor catabolic process" evidence=IEA

GO:0006622 "protein targeting to lysosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q3T0F5 RAB7A "Ras-related protein Rab-7a" [Bos taurus (taxid:9913)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 106/130 (81%), Positives = 119/130 (91%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct:     1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query:   121 VVLGNKIDVD 130
             VVLGNKID++
Sbjct:   121 VVLGNKIDLE 130

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0090385 "phagosome-lysosome fusion" evidence=ISS

GO:0090383 "phagosome acidification" evidence=ISS

GO:0045022 "early endosome to late endosome transport" evidence=ISS

GO:0005770 "late endosome" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P51149	RAB7A_HUMAN	No assigned EC number	0.8091	0.8397	0.6328	yes	no
P36864	YPTV5_VOLCA	No assigned EC number	0.7445	0.8782	0.6682	N/A	no
P93267	RAB7_MESCR	No assigned EC number	0.8278	0.9551	0.7198	N/A	no
Q9LW76	RAG3C_ARATH	No assigned EC number	0.9051	0.8782	0.6650	no	no
O97572	RAB7A_RABIT	No assigned EC number	0.8015	0.8397	0.6328	yes	no
Q9C2L8	RAB7_NEUCR	No assigned EC number	0.8230	0.8333	0.6341	N/A	no
Q40787	RAB7_CENCI	No assigned EC number	0.9781	0.8782	0.6650	N/A	no
Q6DUB4	RAB7B_PAROT	No assigned EC number	0.7187	0.8205	0.6213	N/A	no
P09527	RAB7A_RAT	No assigned EC number	0.8091	0.8397	0.6328	yes	no
P32939	YPT7_YEAST	No assigned EC number	0.7022	0.8333	0.625	yes	no
Q9XI98	RAG3E_ARATH	No assigned EC number	0.9562	0.8782	0.6650	no	no
P36411	RAB7A_DICDI	No assigned EC number	0.7956	0.8653	0.6650	yes	no
P51150	RAB7A_MOUSE	No assigned EC number	0.8091	0.8397	0.6328	yes	no
Q9C820	RAG3D_ARATH	No assigned EC number	0.9197	0.8782	0.6650	no	no
O94655	YPT7_SCHPO	No assigned EC number	0.7538	0.8333	0.6341	yes	no
Q95UJ0	RAB7A_PAROT	No assigned EC number	0.7187	0.8205	0.6213	N/A	no
Q3T0F5	RAB7A_BOVIN	No assigned EC number	0.8153	0.8333	0.6280	yes	no
Q41640	RAB7_VIGAC	No assigned EC number	0.8248	0.8782	0.6650	N/A	no
P31022	RAB7_PEA	No assigned EC number	0.9635	0.8782	0.6650	N/A	no
Q5R9Y4	RAB7A_PONAB	No assigned EC number	0.8091	0.8397	0.6328	yes	no
O24461	RAB7_PRUAR	No assigned EC number	0.9489	0.8782	0.6618	N/A	no
P18067	RAB7A_CANFA	No assigned EC number	0.8091	0.8397	0.6328	yes	no
Q9LS94	RAG3F_ARATH	No assigned EC number	0.9562	0.8782	0.6650	yes	no
Q39573	YPTC5_CHLRE	No assigned EC number	0.7664	0.8782	0.6650	N/A	no
Q9XER8	RAB7_GOSHI	No assigned EC number	0.9416	0.8782	0.6618	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_IX1851 SubName- Full=Putative uncharacterized protein; (207 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	156
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-100
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-68
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-60
pfam00071	162	pfam00071, Ras, Ras family	1e-59
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-55
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-43
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	7e-41
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	8e-39
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-38
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-37
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	2e-37
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-36
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-35
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	3e-35
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	3e-34
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	9e-34
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	2e-32
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	3e-32
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-31
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-31
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	5e-31
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-30
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	4e-30
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	7e-30
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	9e-30
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	4e-29
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-28
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-28
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	2e-28
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	3e-28
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	5e-28
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	3e-27
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	5e-26
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	6e-26
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	2e-25
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	5e-25
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-24
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-24
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	3e-24
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	6e-24
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-23
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-23
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-23
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	3e-23
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	3e-22
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-21
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	4e-21
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	8e-21
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-20
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	3e-20
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	4e-20
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	4e-20
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-19
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-19
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-19
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	4e-19
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-18
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-18
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	3e-18
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	4e-18
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	5e-18
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	5e-16
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	1e-15
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	3e-15
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	4e-15
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-14
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-14
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-14
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	4e-14
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	4e-14
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	4e-14
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	5e-14
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	8e-14
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-13
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	3e-13
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	6e-13
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	1e-12
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	1e-12
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	1e-12
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	3e-12
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	8e-12
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-11
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	1e-11
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	6e-11
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	2e-10
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-10
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	1e-09
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-09
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-09
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	7e-09
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	5e-08
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	2e-07
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	4e-07
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	9e-07
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	6e-06
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	6e-06
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	7e-06
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	8e-06
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	5e-05
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	5e-05
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	7e-05
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	1e-04
TIGR00450	442	TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas	1e-04
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	2e-04
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	3e-04
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	6e-04
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	0.001
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	0.001
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	0.004

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  286 bits (733), Expect = e-100
 Identities = 108/129 (83%), Positives = 118/129 (91%), Gaps = 2/129 (1%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL TLQIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RFQSLGVAFYRGADCCVLVYDV + KSF++L++WR+EFLIQASP DP+NFPFVVLGNKID
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 129 VDGGNSRVV 137
           ++    R V
Sbjct: 121 LE--EKRQV 127

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  203 bits (519), Expect = 3e-68
 Identities = 64/138 (46%), Positives = 94/138 (68%), Gaps = 7/138 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+I++GDSGVGK+SL++++ + KFS QYK+TIG DF TK ++ + +   LQIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+S+  ++YRGA   +LVYD+ + +SF+NL NW +E    ASP    N   +++GNK D
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASP----NVVIMLVGNKSD 116

Query: 129 VDGGNSRVVCFGEEGSSM 146
           ++    R V   EE  + 
Sbjct: 117 LE--EQRQVSR-EEAEAF 131

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  184 bits (469), Expect = 1e-60
 Identities = 59/120 (49%), Positives = 85/120 (70%), Gaps = 4/120 (3%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GDSGVGKTSL+ ++V+ KFS  YK+TIG DF +K ++ + +   LQIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+S+  ++YRGA   +LVYDV + +SF+NL+ W  E    A    P N P +++GNK D
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYA----PPNIPIILVGNKSD 116

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  181 bits (462), Expect = 1e-59
 Identities = 62/137 (45%), Positives = 89/137 (64%), Gaps = 7/137 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD GVGK+SL+ ++   KF  +Y  TIG DF TK ++ + +   LQIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F++L   +YRGA   +LVYD+ S  SF+N+  W EE L  A     +N P V++GNK D+
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHA----DENVPIVLVGNKCDL 116

Query: 130 DGGNSRVVCFGEEGSSM 146
              + RVV   EEG ++
Sbjct: 117 --EDQRVVST-EEGEAL 130

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  171 bits (435), Expect = 2e-55
 Identities = 71/125 (56%), Positives = 96/125 (76%)

Query: 5   RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           + +LLKVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    TLQIWDT
Sbjct: 2   KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDT 61

Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
           AGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LG
Sbjct: 62  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 121

Query: 125 NKIDV 129
           NKID+
Sbjct: 122 NKIDI 126

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  140 bits (355), Expect = 2e-43
 Identities = 55/134 (41%), Positives = 86/134 (64%), Gaps = 7/134 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LGD  VGKTS++ +++   F NQY+ATIG DFL+K +  +D+   LQ+WDTAGQER
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F+SL  ++ R +   V+VYD+ + +SFDN + W ++   +      ++   V++GNK D+
Sbjct: 62  FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG----NDVIIVLVGNKTDL 117

Query: 130 DGGNSRVVCFGEEG 143
              + R V   EEG
Sbjct: 118 S--DKRQVST-EEG 128

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  134 bits (339), Expect = 7e-41
 Identities = 52/120 (43%), Positives = 76/120 (63%), Gaps = 3/120 (2%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK++++GDSGVGK+SL+ ++ +  F     +TIG DF  K V  + +   L IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF++L  ++YRGA   +LVYDV    +FDNL+ W  E     + S   +   +++GNKID
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNEL---DTYSTNPDAVKMLVGNKID 117

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  128 bits (325), Expect = 8e-39
 Identities = 54/139 (38%), Positives = 88/139 (63%), Gaps = 7/139 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 3   LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   +LVYD+   KSF+N+ NW       AS    ++   +++GNK 
Sbjct: 63  ERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHAS----EDVERMLVGNKC 118

Query: 128 DVDGGNSRVVCFGEEGSSM 146
           D++    RVV   EEG ++
Sbjct: 119 DME--EKRVVSK-EEGEAL 134

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  127 bits (322), Expect = 2e-38
 Identities = 47/121 (38%), Positives = 79/121 (65%), Gaps = 4/121 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK++L++++   +F+   K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 3   LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LVYD+    +F+N+  W +E    A      N   +++GNK 
Sbjct: 63  ERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHA----DSNIVIMLVGNKS 118

Query: 128 D 128
           D
Sbjct: 119 D 119

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  125 bits (317), Expect = 1e-37
 Identities = 55/128 (42%), Positives = 78/128 (60%), Gaps = 6/128 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG+  VGKTSL+ +YV  KF+ ++++T  A F  K V    +   L IWDTAGQER
Sbjct: 2   KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           + +LG  +YR AD  +LVYD+    SF  +  W +E L Q      +N   V++GNKID+
Sbjct: 62  YHALGPIYYRDADGAILVYDITDADSFQKVKKWIKE-LKQMR---GNNISLVIVGNKIDL 117

Query: 130 DGGNSRVV 137
           +    RVV
Sbjct: 118 E--RQRVV 123

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  125 bits (316), Expect = 2e-37
 Identities = 52/128 (40%), Positives = 80/128 (62%), Gaps = 6/128 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LGDS VGK+S++ ++V  +FS   ++TIGA FLT+ V  +D     +IWDTAGQER
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER 62

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           ++SL   +YRGA   ++VYD+ S +SF+   +W +E      P    N    + GNK D+
Sbjct: 63  YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPP----NIVIALAGNKADL 118

Query: 130 DGGNSRVV 137
           +  + R V
Sbjct: 119 E--SKRQV 124

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  124 bits (313), Expect = 2e-36
 Identities = 52/121 (42%), Positives = 73/121 (60%), Gaps = 5/121 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LGD GVGKT+L+N+ V  +F   Y  TIG     K ++   R   LQ+WDTAGQE
Sbjct: 6   FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKI 127
            ++SL   +YRGA+  ++VYD    +S D L   W EE    A    PD+ P +++GNKI
Sbjct: 66  EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELA----PDDVPILLVGNKI 121

Query: 128 D 128
           D
Sbjct: 122 D 122

Length = 219

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  120 bits (303), Expect = 2e-35
 Identities = 51/134 (38%), Positives = 87/134 (64%), Gaps = 6/134 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 2   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQ 61

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK 
Sbjct: 62  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 117

Query: 128 DVDGGNSRVVCFGE 141
           D+   + +VV + E
Sbjct: 118 DLT--DKKVVDYTE 129

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  120 bits (304), Expect = 3e-35
 Identities = 47/131 (35%), Positives = 78/131 (59%), Gaps = 5/131 (3%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQ 67
            KV+++GD GVGKTS++ +YV+  FS  YKATIG DF  K ++++   +  LQ+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN--FPFVVLGN 125
           ERF  +   +Y+GA   ++V+DV    +F+ +  W+ +  + +  + P+    P ++L N
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKAD--LDSKVTLPNGEPIPALLLAN 118

Query: 126 KIDVDGGNSRV 136
           K D+       
Sbjct: 119 KCDLKKERLAK 129

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  117 bits (295), Expect = 3e-34
 Identities = 53/133 (39%), Positives = 81/133 (60%), Gaps = 6/133 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K +I+G +G GK+ L++Q++  KF      TIG +F ++ V    +   LQIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+S+  ++YRGA   +LVYD+ S +SF+ L NW  +    ASP    +   +++GNK D
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASP----DIVIILVGNKKD 116

Query: 129 VDGGNSRVVCFGE 141
           ++  + R V F E
Sbjct: 117 LE--DDREVTFLE 127

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  116 bits (292), Expect = 9e-34
 Identities = 52/136 (38%), Positives = 86/136 (63%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + +  + +   LQIWDTAGQ
Sbjct: 4   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 63

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E F+S+  ++YRGA   +LVYD+   ++F++L +W E+    ++     N   +++GNK 
Sbjct: 64  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNS----NMTIMLIGNKC 119

Query: 128 DVDGGNSRVVCFGEEG 143
           D++  + R V + EEG
Sbjct: 120 DLE--SRREVSY-EEG 132

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  112 bits (282), Expect = 2e-32
 Identities = 45/123 (36%), Positives = 74/123 (60%), Gaps = 7/123 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFT--LQIWDTAG 66
           +KVI++G+  VGK+S++ ++V   F+  YK TIG DFL K++          L +WDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE F ++  A+YRGA  C+LV+     +SF+ + +W+E        ++  + P V++  K
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKE-----KVEAECGDIPMVLVQTK 115

Query: 127 IDV 129
           ID+
Sbjct: 116 IDL 118

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  112 bits (282), Expect = 3e-32
 Identities = 55/140 (39%), Positives = 83/140 (59%), Gaps = 15/140 (10%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL----------F 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +            
Sbjct: 4   LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRV 63

Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD 
Sbjct: 64  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPD- 122

Query: 118 FPFVVLGNKIDVDGGNSRVV 137
              V++GNK D+   + R V
Sbjct: 123 --IVLIGNKADLP--DQREV 138

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  110 bits (277), Expect = 1e-31
 Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 7/138 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  ++V+ +F  +Y  TI  D   K++  +   +TL I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + R  D  +LVY + S +SF+ + N RE+ L      D ++ P V++GNK D+
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRV---KDKEDVPIVLVGNKCDL 116

Query: 130 DGGNSRVVCFGEEGSSMV 147
           +  N R V   EEG ++ 
Sbjct: 117 E--NERQV-STEEGEALA 131

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  110 bits (276), Expect = 2e-31
 Identities = 49/121 (40%), Positives = 75/121 (61%), Gaps = 4/121 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+I++GDS VGKT L  ++   +F  + +ATIG DF  + V+ +     +Q+WDTAGQER
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 70  F-QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           F +S+   +YR     V VYDV +M SF +L +W EE    + P++    P +++GNK D
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNE---VPRILVGNKCD 120

Query: 129 V 129
           +
Sbjct: 121 L 121

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  109 bits (273), Expect = 5e-31
 Identities = 49/134 (36%), Positives = 84/134 (62%), Gaps = 6/134 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K II+GD GVGK+ L++Q+  KKF      TIG +F T+ ++   +   LQIWDTAGQ
Sbjct: 2   IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ 61

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYD+    ++++L++W  +     + ++P+   F++ GNK 
Sbjct: 62  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD---ARNLTNPNTVIFLI-GNKA 117

Query: 128 DVDGGNSRVVCFGE 141
           D++    R V + E
Sbjct: 118 DLEA--QRDVTYEE 129

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  109 bits (273), Expect = 2e-30
 Identities = 48/123 (39%), Positives = 80/123 (65%), Gaps = 4/123 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+++++++   +F  + K+TIG +F T+ +Q E +    QIWDTAGQ
Sbjct: 12  LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LVYD+   ++FDN+  W  E    A      N   ++ GNK 
Sbjct: 72  ERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKS 127

Query: 128 DVD 130
           D++
Sbjct: 128 DLN 130

Length = 216

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  108 bits (270), Expect = 4e-30
 Identities = 58/148 (39%), Positives = 84/148 (56%), Gaps = 9/148 (6%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++I+GDSGVGK+SL+ ++ +  FS  Y  TIG DF  + V+       LQIWDTAGQ
Sbjct: 6   LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++   +YRG    ++VYDV + +SF N+  W +E  I+    + D+   V++GNK 
Sbjct: 66  ERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQE--IEQ---NCDDVCKVLVGNKN 120

Query: 128 DVDGGNSRVVCFGEEGSSMVCLQRKYSL 155
           D      R V    E +     Q   SL
Sbjct: 121 D---DPERKVVE-TEDAYKFAGQMGISL 144

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  107 bits (269), Expect = 7e-30
 Identities = 53/136 (38%), Positives = 85/136 (62%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + +  +++   LQIWDTAGQ
Sbjct: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E F+S+  ++YRGA   +LVYD+   ++F++L +W E+    A+     N   +++GNK 
Sbjct: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA----NMTIMLIGNKC 121

Query: 128 DVDGGNSRVVCFGEEG 143
           D+   + R V   EEG
Sbjct: 122 DL--AHRRAVST-EEG 134

Length = 210

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  107 bits (268), Expect = 9e-30
 Identities = 46/136 (33%), Positives = 85/136 (62%), Gaps = 6/136 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFT-LQIWDTAGQE 68
           ++I++GDS VGK+SL+ ++   +F+     T+G DF ++ ++ E  +   LQ+WDTAGQE
Sbjct: 4   RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+S+  ++YR +   +LV+D+ + +SF+++++W EE      P  P    F+++G+K D
Sbjct: 64  RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRP---VFILVGHKCD 120

Query: 129 VDGGNSRVVCFGEEGS 144
           ++  + R V   E   
Sbjct: 121 LE--SQRQVTREEAEK 134

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  104 bits (261), Expect = 4e-29
 Identities = 53/149 (35%), Positives = 87/149 (58%), Gaps = 10/149 (6%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K+I++GDS VGKT ++ ++ +  FS +   TIG DF  K ++ + +   LQIWDTAGQ
Sbjct: 3   LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YR A+  ++ YD+    SF+++ +W EE     +     N   +++GNK 
Sbjct: 63  ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGAS----NVVLLLIGNKC 118

Query: 128 DVDGGNSRVVCFGEEGSSMVCLQRKYSLL 156
           D++    R V F EE  +   L   Y +L
Sbjct: 119 DLE--EQREVLF-EEACT---LAEHYGIL 141

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  103 bits (257), Expect = 2e-28
 Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 4/123 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G++GVGKT L+ ++    F     ATIG DF+ K V+ +     LQIWDTAGQ
Sbjct: 7   LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ 66

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YR A+  +L YD+   +SF  L  W  E    A+    +    +++GNKI
Sbjct: 67  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAN----NKVITILVGNKI 122

Query: 128 DVD 130
           D+ 
Sbjct: 123 DLA 125

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  103 bits (258), Expect = 2e-28
 Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 4/122 (3%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+VII+G  GVGKTSLM ++ +  F    K+T+G DF  K V+   +   LQIWDTAGQE
Sbjct: 1   LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF S+  A+YR A   +LVYD+   ++FD+L  W +     AS    ++   +++GNK+D
Sbjct: 61  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLD 116

Query: 129 VD 130
            +
Sbjct: 117 CE 118

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  102 bits (255), Expect = 2e-28
 Identities = 50/130 (38%), Positives = 83/130 (63%), Gaps = 6/130 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F++ + +T+G DF  K V   D+   LQIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +L+YD+ + +SF+ + +W      Q      DN   +++GNK 
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW----STQIKTYSWDNAQVILVGNKC 116

Query: 128 DVDGGNSRVV 137
           D++  + RVV
Sbjct: 117 DME--DERVV 124

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  102 bits (255), Expect = 3e-28
 Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 1/121 (0%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +KVI +G+SGVGK+ ++ +Y   +F ++Y  TIG D+  K+V   ++   +  +D +G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQ-ASPSDPDNFPFVVLGNKI 127
            +  +   FY+     +LVYDV   +SF+ L++W +E   +     + +N   VV  NKI
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKI 120

Query: 128 D 128
           D
Sbjct: 121 D 121

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  102 bits (255), Expect = 5e-28
 Identities = 56/129 (43%), Positives = 78/129 (60%), Gaps = 7/129 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           KV+++GDSGVGKT L+ ++ +  F +  + AT+G  F  K V  +     LQIWDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+S+  A+YR A   +L+YDV +  SFDN+  W  E L  A      +   ++LGNK D
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQ----SDVVIMLLGNKAD 117

Query: 129 VDGGNSRVV 137
           + G   RVV
Sbjct: 118 MSG--ERVV 124

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 99.5 bits (248), Expect = 3e-27
 Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 5/122 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+I+LGDS VGK+ L+ +++   +  Q  +T          +FE +   +  WDTAGQE
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RFQ++  ++Y  A  C+LV+DV    ++ NL+ W EE L +  P      P +V+ NKID
Sbjct: 61  RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEE-LREYRPE----IPCIVVANKID 115

Query: 129 VD 130
           +D
Sbjct: 116 LD 117

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 96.5 bits (240), Expect = 5e-26
 Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 3/123 (2%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVI++GD  VGKT L+N++    F   YKATIG DF  +  +     F+LQ+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F+ +   +YRGA   ++V+D+  + S ++   W E+ L +  PS      F+V G K D+
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSV--LLFLV-GTKKDL 118

Query: 130 DGG 132
              
Sbjct: 119 SSP 121

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 96.9 bits (241), Expect = 6e-26
 Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 1/98 (1%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           +KV++LG   VGKTSL+ +YV+ +F    Y+ TIGA F+ K +   +R+ TL IWDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 105
           ER++++   +YRGA   ++ YD+    SF+    W +E
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKE 98

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 96.0 bits (239), Expect = 2e-25
 Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 4/123 (3%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQ 67
           +K+++LGD   GKTSL+ ++  + F   YK TIG DF ++ +     L  TLQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL-GNK 126
           +    +   +  GA    LVYD+ + +SF+NL +W    +++    + +  P +VL GNK
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLS--VVKKVNEESETKPKMVLVGNK 118

Query: 127 IDV 129
            D+
Sbjct: 119 TDL 121

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 93.9 bits (234), Expect = 5e-25
 Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 19/127 (14%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA-----DFLTK--EVQFEDRLFTLQIW 62
           K++++GD G GKT+ + +++  +F  +Y AT+G      DF T   +++F        +W
Sbjct: 2   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFN-------VW 54

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           DTAGQE+F  L   +Y    C ++++DV S  ++ N+ NW  + +        +N P V+
Sbjct: 55  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVL 109

Query: 123 LGNKIDV 129
            GNK+D+
Sbjct: 110 CGNKVDI 116

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 92.6 bits (231), Expect = 2e-24
 Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 7/121 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K++++GD  VGKT L+  Y   KF  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQE 59

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  +L + V+S  SF+N+   W  E +    P    N P +++G KI
Sbjct: 60  EYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPE-IKHYCP----NVPIILVGTKI 114

Query: 128 D 128
           D
Sbjct: 115 D 115

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 91.8 bits (229), Expect = 2e-24
 Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 6/128 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q++   F + Y  TI  D   K+++ +  +  L I DTAGQE 
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEE 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + R  +  +LVY +   +SF+ +  +RE+ L      D D+ P V++GNK D+
Sbjct: 61  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQIL---RVKDRDDVPIVLVGNKCDL 117

Query: 130 DGGNSRVV 137
           +  + RVV
Sbjct: 118 E--SERVV 123

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 92.8 bits (230), Expect = 3e-24
 Identities = 51/139 (36%), Positives = 84/139 (60%), Gaps = 8/139 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GDSGVGK+SL+  +++    +    TIG DF  K++    +   L IWDTAGQE
Sbjct: 15  FKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKI 127
           RF++L  ++YR A   +LVYDV   ++F NL++ W +E  + ++  D      +++GNK+
Sbjct: 74  RFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVK---MLVGNKV 130

Query: 128 DVDGGNSRVVCFGEEGSSM 146
           D +    R V   EEG ++
Sbjct: 131 DRESE--RDVS-REEGMAL 146

Length = 211

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 91.2 bits (226), Expect = 6e-24
 Identities = 44/123 (35%), Positives = 75/123 (60%), Gaps = 10/123 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            +++++GDSGVGKT L+ ++ + +F + + +TIG DF  K ++ +     +QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD---PDNFPFVVLGN 125
           R+Q++   +YR A    LVYD++S +S+ ++  W        S  D   P+    +++GN
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKW-------VSDVDEYAPEGVQKILIGN 113

Query: 126 KID 128
           K D
Sbjct: 114 KAD 116

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 90.3 bits (225), Expect = 1e-23
 Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 6/128 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F ++Y  TI  D   K+++ +  +  L I DTAGQE 
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEE 62

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + R  +  +LVY +   +SF+ +  +RE+ L      D D+ P V++GNK D+
Sbjct: 63  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQIL---RVKDRDDVPIVLVGNKCDL 119

Query: 130 DGGNSRVV 137
           +  N RVV
Sbjct: 120 E--NERVV 125

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 91.9 bits (228), Expect = 1e-23
 Identities = 48/148 (32%), Positives = 82/148 (55%), Gaps = 10/148 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV++LGD  VGKTSL+++Y+ ++F     +T+G  F  K+       + + IWDTAG+E
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLKQW----GPYNISIWDTAGRE 55

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  LG  + RGA   +L YDV++++S + L    E+  +  + +  ++  F V+GNK+D
Sbjct: 56  QFHGLGSMYCRGAAAVILTYDVSNVQSLEEL----EDRFLGLTDTANEDCLFAVVGNKLD 111

Query: 129 V-DGGNSRVVCFGEEGSSMVCLQRKYSL 155
           + + G                 QR+ +L
Sbjct: 112 LTEEGALAGQEKDAGDRVSPEDQRQVTL 139

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 89.8 bits (223), Expect = 1e-23
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 16/131 (12%)

Query: 13  ILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           ++G  GVGK+SL+N  +  +    S+    T   D   KE+        L + DT G + 
Sbjct: 2   VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKV--KLVLVDTPGLDE 59

Query: 70  FQSLGVA-----FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
           F  LG         RGAD  +LV D    +S ++        L +      +  P +++G
Sbjct: 60  FGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRK------EGIPIILVG 113

Query: 125 NKIDVDGGNSR 135
           NKID+      
Sbjct: 114 NKIDLLEEREV 124

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 90.5 bits (225), Expect = 3e-23
 Identities = 42/128 (32%), Positives = 71/128 (55%), Gaps = 21/128 (16%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQIW 62
           K+I++GD GVGKT+ + +++  +F  +Y  T+G +     F T    + F        +W
Sbjct: 11  KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFN-------VW 63

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW-REEFLIQASPSDPDNFPFV 121
           DTAGQE+F  L   +Y    C ++++DV S  ++ N+ NW R+   +       +N P V
Sbjct: 64  DTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV------CENIPIV 117

Query: 122 VLGNKIDV 129
           ++GNK+DV
Sbjct: 118 LVGNKVDV 125

Length = 215

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 86.3 bits (214), Expect = 3e-22
 Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 8/138 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            + ++   + R  +  + V+ +NS KSF++++ +RE+        D D+ P V++GNK D
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIK---RVKDSDDVPMVLVGNKCD 117

Query: 129 VDGGNSRVVCFGEEGSSM 146
           +    +R V    +G  +
Sbjct: 118 LA---ARTVST-RQGQDL 131

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 84.4 bits (209), Expect = 2e-21
 Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 10/147 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++G  GVGK++L  Q++   F   Y  TI  D  TK+ + + +   L I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI-EDSYTKQCEIDGQWARLDILDTAGQE 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            F ++   + R  +  +LV+ V    SF+ ++ +  + L      D D FP +++GNK D
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQIL---RVKDRDEFPMILVGNKAD 118

Query: 129 VDGGNSRVVCFGEEGSSMVCLQRKYSL 155
           ++  + R V   EEG     L R+  +
Sbjct: 119 LE--HQRQVS-REEGQ---ELARQLKI 139

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 84.1 bits (208), Expect = 4e-21
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 6/132 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q++   F ++Y  TI  D   K+   ++    L I DTAGQE 
Sbjct: 7   KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI-EDSYRKQCVIDEETCLLDILDTAGQEE 65

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           + ++   + R     + VY + S  SF+ + ++RE+ L      D D  P +++GNK D+
Sbjct: 66  YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQIL---RVKDKDRVPMILVGNKCDL 122

Query: 130 DGGNSRVVCFGE 141
           D  + R V  GE
Sbjct: 123 D--SERQVSTGE 132

Length = 189

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 84.0 bits (208), Expect = 8e-21
 Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 19/128 (14%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA-----DFLTK--EVQFEDRLFTLQI 61
            K++I+GD G GKT+ + +++  +F  +Y+ TIG      DF T   +++F         
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY-------C 66

Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
           WDTAGQE+F  L   +Y    C ++++DV +  ++ N+  W  + L +      +N P V
Sbjct: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVC----ENIPIV 121

Query: 122 VLGNKIDV 129
           + GNK+DV
Sbjct: 122 LCGNKVDV 129

Length = 219

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 82.7 bits (205), Expect = 1e-20
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 7/119 (5%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           ++++GD  VGKT L+  Y    F   Y  T+  +  + +V+ + +   L +WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 71  QSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             L    Y   D  ++ + V+S  SF+N    W  E +    P    N P +++G K+D
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPE-VKHFCP----NVPIILVGTKLD 113

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 81.4 bits (201), Expect = 3e-20
 Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 6/128 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F   Y  TI  D   K+V+ + R   L+I DTAG E+
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTI-EDSYRKQVEIDGRQCDLEILDTAGTEQ 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + +     +LVY V S  S + L   RE+ L      D DN P V++GNK D+
Sbjct: 62  FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVL---RIKDSDNVPMVLVGNKADL 118

Query: 130 DGGNSRVV 137
           +  + R V
Sbjct: 119 E--DDRQV 124

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 81.3 bits (201), Expect = 4e-20
 Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 7/122 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYV-NKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           K++I+GD  VGK++L+N+ + NK    +YK     +++T  ++ + + +   + DTAGQE
Sbjct: 3   KIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 62

Query: 69  RFQSLGVAFYRGADCCVLVYD-VNSMKSF-DNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
            + ++   +YR  +  + V+D V  +    + L    +E +  A        P +++GNK
Sbjct: 63  DYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA----ESGVPIILVGNK 118

Query: 127 ID 128
           ID
Sbjct: 119 ID 120

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 81.0 bits (200), Expect = 4e-20
 Identities = 37/122 (30%), Positives = 72/122 (59%), Gaps = 6/122 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG  GVGK++L  Q+V+  F  +Y  TI  DF  KE++ +     L+I DTAG E+
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQ 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFL-IQASPSDPDNFPFVVLGNKID 128
           F S+   + +     ++VY + + ++F ++   R++ + ++      +  P +++GNK+D
Sbjct: 62  FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGY----EKVPIILVGNKVD 117

Query: 129 VD 130
           ++
Sbjct: 118 LE 119

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 80.4 bits (199), Expect = 1e-19
 Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 7/134 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ +LG   VGK+SL  Q+V   F   Y  TI   F +K + ++ + + L+I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           +  L   +  G    +LVY V S KSF+ +    ++ L        ++ P V++GNK D+
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG---KESVPIVLVGNKSDL 118

Query: 130 DGGNSRVVCFGEEG 143
                R V   EEG
Sbjct: 119 H--MERQVSA-EEG 129

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 79.4 bits (196), Expect = 2e-19
 Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     L I DTAGQE 
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK-ADSYRKKVVLDGEEVQLNILDTAGQED 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           + ++   ++R  +  +LV+ +  M+SF  L  +RE+ L      + DN P +++GNK D+
Sbjct: 61  YAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQIL---RVKEDDNVPLLLVGNKCDL 117

Query: 130 DG 131
           + 
Sbjct: 118 ED 119

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 79.1 bits (195), Expect = 2e-19
 Identities = 45/137 (32%), Positives = 81/137 (59%), Gaps = 7/137 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F ++Y  TI  D   K+++ + +   L+I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTI-EDSYRKQIEVDCQQCMLEILDTAGTEQ 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + +      LVY + + +SF++L + RE+ L      D ++ P +++GNK D+
Sbjct: 62  FTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 118

Query: 130 DGGNSRVVCFGEEGSSM 146
           +  + RVV   EEG ++
Sbjct: 119 E--DERVVS-KEEGQNL 132

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 78.7 bits (194), Expect = 4e-19
 Identities = 43/128 (33%), Positives = 75/128 (58%), Gaps = 6/128 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQ 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + +     VLVY + +  +F++L + RE+ L      D ++ P +++GNK D+
Sbjct: 62  FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 118

Query: 130 DGGNSRVV 137
           +  + RVV
Sbjct: 119 E--DERVV 124

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 77.5 bits (190), Expect = 1e-18
 Identities = 42/111 (37%), Positives = 68/111 (61%), Gaps = 7/111 (6%)

Query: 33  FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS 92
           F N Y++TIG DFL+K +  ++    LQ+WDTAGQERF+SL  ++ R +   ++VYD+ +
Sbjct: 5   FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN 64

Query: 93  MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEG 143
            +SF+N   W ++ L +       +    ++GNK D+  G+ R V + EEG
Sbjct: 65  RQSFENTTKWIQDILNERG----KDVIIALVGNKTDL--GDLRKVTY-EEG 108

Length = 176

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 77.4 bits (190), Expect = 2e-18
 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 15/121 (12%)

Query: 14  LGDSGVGKTSLMNQYVNKKFSNQYKATIGA-----DFLTKEVQFEDRLFTLQIWDTAGQE 68
           +GD G GKT+ + +++  +F  +Y AT+G       F T             +WDTAGQE
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIR-----FNVWDTAGQE 55

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y    C ++++DV +  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 56  KFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 110

Query: 129 V 129
           V
Sbjct: 111 V 111

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 76.8 bits (189), Expect = 3e-18
 Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 5/137 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LGD GVGKT+L  Q     F   Y  TI  D   K+V  + +   L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI-EDSYRKQVVVDGQPCMLEVLDTAGQEE 59

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           + +L   + R  +  +LVY + S  +F+ +  +RE+   +       + P +++GNK D 
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQ-RVKDESAADVPIMIVGNKCDK 118

Query: 130 DGGNSRVVCFGEEGSSM 146
                R V   EEG+++
Sbjct: 119 V--YEREVS-TEEGAAL 132

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 76.6 bits (189), Expect = 4e-18
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 14/126 (11%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR-LFTLQIWDTAGQ 67
           +K++++GD G GKT L+  Y    F  +Y  T+  +++T  +Q  +  +  L +WDTAGQ
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVT-TLQVPNGKIIELALWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREE---FLIQASPSDPDNFPFVVL 123
           E +  L    Y   D  ++ Y V++  S DN  + W  E   F            P V++
Sbjct: 63  EDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFC--------PGTPIVLV 114

Query: 124 GNKIDV 129
           G K D+
Sbjct: 115 GLKTDL 120

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 76.1 bits (187), Expect = 5e-18
 Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 5/120 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           LLK +++GDS VGK  ++    +    + Y   +G D+ T  +  + R   LQ+WDT+GQ
Sbjct: 6   LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
            RF ++  ++ RGA   +LVYD+ +  SFD ++ W +E    A        P +++GN++
Sbjct: 66  GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-----GVPKILVGNRL 120

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 70.4 bits (173), Expect = 5e-16
 Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 7/130 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ +LG SGVGK++L  +++ K+F  +Y+  + + + +++V  +    +L+I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-SRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 70  FQS--LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
            +         R AD  VLVY +    SFD ++   +  LI+         P +++GNK 
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQ--LIREIKKRDGEIPVILVGNKA 117

Query: 128 DVDGGNSRVV 137
           D+   +SR V
Sbjct: 118 DLL--HSRQV 125

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 70.3 bits (172), Expect = 1e-15
 Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 6/120 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +++ +G +GVGKT+L+ +++   F  +++ T+  +  +KE +      T+ I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTV-EELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNF-PFVVLGNKID 128
           F ++     +  D   LVY V+  +SF+ +   REE L        D F P VV+GNKID
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEIL----EVKEDKFVPIVVVGNKID 115

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 69.1 bits (169), Expect = 3e-15
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 2/99 (2%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LGD   GKTSL+N +    F   Y+ T+  ++   ++  +     L +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-IHDIFVDGLAVELSLWDTAGQEE 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFL 107
           F  L    Y      +L + V++  S +N+ + W  E  
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIR 99

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 68.6 bits (168), Expect = 4e-15
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK+ +LGD+ +GKTSLM +YV  +F  +Y  T+G +F+ K +       T  IWD  GQ 
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            F ++     + A   + ++D+    + +++  W      QA   +    P +V G K D
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYR----QARGFNKTAIPILV-GTKYD 115

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 67.2 bits (164), Expect = 1e-14
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 7/127 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQFEDRLFTLQ--IWDT 64
            +  ++GD  VGK++L+  + +    F   Y  T G D + K V   D   +++  I+D+
Sbjct: 1   AQCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDS 60

Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
           AGQE F  +    +       +VYDV +  SF+N + W       +      + P V++G
Sbjct: 61  AGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGL---HTPGVLVG 117

Query: 125 NKIDVDG 131
           NK D+  
Sbjct: 118 NKCDLTD 124

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 65.1 bits (159), Expect = 2e-14
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 6/120 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL--TKEVQFEDRLFTLQIWDTAGQ 67
           KV+++GD G GK+SL++Q V  +F  +     G      T EV  +  L    IWD  G+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLL--NIWDFGGR 58

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E  +   + F + AD  +LVYD+   +S + ++      L           P +++GNK+
Sbjct: 59  EELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAW-LPNLRKLGG-KIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 66.8 bits (163), Expect = 2e-14
 Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 7/121 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKTSL+  +   +F  +Y  T+  +++T + + + +   L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVT-DCRVDGKPVQLALWDTAGQEE 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKID 128
           ++ L    Y  A   ++ + +++  S +N+   W EE   +  P    N P +++G K D
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVR-RYCP----NVPVILVGLKKD 116

Query: 129 V 129
           +
Sbjct: 117 L 117

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 65.4 bits (160), Expect = 4e-14
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 6/121 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQE 68
           K++++G  GVGKTSL  Q + +KF     +T G +    ++   +R    L +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            + +    F       +LV+D+ +      +  W     I+A        P +++G  ID
Sbjct: 63  IYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWL--RQIKAFGGVS---PVILVGTHID 117

Query: 129 V 129
            
Sbjct: 118 E 118

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 65.6 bits (160), Expect = 4e-14
 Identities = 37/137 (27%), Positives = 73/137 (53%), Gaps = 7/137 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK+++  Q+++  F + +  TI  D    + + ++    L I DTAGQ  
Sbjct: 4   KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTI-EDAYKTQARIDNEPALLDILDTAGQAE 62

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + R  +  ++ Y V    SF   + ++ E + +   +  ++ P V++GNK+D+
Sbjct: 63  FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFK-ELITRVRLT--EDIPLVLVGNKVDL 119

Query: 130 DGGNSRVVCFGEEGSSM 146
           +    R V   EEG ++
Sbjct: 120 E--QQRQVT-TEEGRNL 133

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 65.8 bits (160), Expect = 4e-14
 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 5/121 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK +++GD  VGKT L+  Y N  F  +Y  T+  D     V    + + L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 59

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V +  SF N+   +EE++ +     P N P++++G +ID
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNV---KEEWVPELKEYAP-NVPYLLIGTQID 115

Query: 129 V 129
           +
Sbjct: 116 L 116

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 65.3 bits (159), Expect = 5e-14
 Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 7/122 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V  +     L +WDTAGQE
Sbjct: 2   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    YRGAD  +L + + S  S++N L  W  E L   +P      P V++G K+
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPE-LRHYAP----GVPIVLVGTKL 115

Query: 128 DV 129
           D+
Sbjct: 116 DL 117

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 65.3 bits (159), Expect = 8e-14
 Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 19/133 (14%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWD----- 63
           ++V +LG  GVGKT+++ Q++ ++F  +Y  T         V    R++ L I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 64  ----TAGQE----RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP 115
               TAGQE    RF+ L     R +   +LVYD+ S  SF  +   R++ L +  P+  
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQIL-ETRPAGN 114

Query: 116 DNFPFVVLGNKID 128
              P VV+GNK D
Sbjct: 115 KEPPIVVVGNKRD 127

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 64.3 bits (157), Expect = 1e-13
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK +++GD  VGKTSL+  Y    +  +Y  T   D  +  V  + +   LQ+ DTAGQ+
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQD 59

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEF 106
            F  L    Y   D  +L + V +  SF N++  W  E 
Sbjct: 60  EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEI 98

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 65.7 bits (160), Expect = 3e-13
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 21/142 (14%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-------------EDR 55
           ++V+++GDSGVGK+SL++  V      +   TIG     K + +              +R
Sbjct: 22  VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSER 81

Query: 56  LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP 115
            F +++WD +G ER++     FY   +  + V+D++  ++  +L  W  E     + S P
Sbjct: 82  DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAP 141

Query: 116 DN--------FPFVVLGNKIDV 129
                      P++V+GNK D+
Sbjct: 142 LGSGGPGGLPVPYIVIGNKADI 163

Length = 334

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 62.6 bits (152), Expect = 6e-13
 Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 5/121 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  D     V      +TL ++DTAGQE
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 61  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCP-KTPFLLVGTQID 116

Query: 129 V 129
           +
Sbjct: 117 L 117

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 62.6 bits (152), Expect = 1e-12
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 24/151 (15%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-----EDRLFTLQIWD 63
           +KV++LGDSGVGK+SL++     +       T+G     +   +     E++ F +++WD
Sbjct: 1   VKVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWD 60

Query: 64  TAGQ----ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP---- 115
             G     E  +S    FY   +  + V+D+ + KS  NL  W  E L + +        
Sbjct: 61  VGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVT 120

Query: 116 ----------DN-FPFVVLGNKIDVDGGNSR 135
                      N  P +V+G K+D      R
Sbjct: 121 NGDYDSEQFAGNPVPLLVIGTKLDQIPEAKR 151

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 62.1 bits (151), Expect = 1e-12
 Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 7/120 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GDS  GKT+L+  +    F   Y  T+  +  T   + + +   L +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + ++    Y  +D  ++ +D++  ++ D+ L  W+ E   +  P    N P +++G K D
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVR-EFCP----NTPVLLVGCKSD 116

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 61.8 bits (150), Expect = 1e-12
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 7/122 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E +    P    N P +++G K+
Sbjct: 61  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE-VRHHCP----NTPIILVGTKL 115

Query: 128 DV 129
           D+
Sbjct: 116 DL 117

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 61.2 bits (148), Expect = 3e-12
 Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 7/148 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  + +   + R  +L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTAGQE 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   +  ++ + + S  S++N+ + W  E +    P    N P +++G K 
Sbjct: 63  EYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPE-VCHHCP----NVPILLVGTKK 117

Query: 128 DVDGGNSRVVCFGEEGSSMVCLQRKYSL 155
           D+      +    E+G + +  Q+  +L
Sbjct: 118 DLRNDADTLKKLKEQGQAPITPQQGGAL 145

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 59.1 bits (144), Expect = 8e-12
 Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 8/120 (6%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           ++++LG  G GKT+++ +    +       TIG  F  + V++++      +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEV-VTTIPTIG--FNVETVEYKN--VKFTVWDVGGQDK 55

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            + L   +Y   D  + V D +  +  +   N   + L +    +    P ++L NK D+
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNE---EELKGAPLLILANKQDL 112

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 59.1 bits (143), Expect = 1e-11
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 16/126 (12%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V++ G  GVGK+SL+ ++V   F   Y  TI  D   + +     + TLQI DT G  +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCSKSICTLQITDTTGSHQ 61

Query: 70  FQSL-------GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           F ++       G AF       +LVY + S +S + L    E  + +   ++ +  P ++
Sbjct: 62  FPAMQRLSISKGHAF-------ILVYSITSKQSLEELKPIYEL-ICEIKGNNLEKIPIML 113

Query: 123 LGNKID 128
           +GNK D
Sbjct: 114 VGNKCD 119

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 60.1 bits (146), Expect = 1e-11
 Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 6/126 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           ++++LG S VGKT+++++++  +F  QY  TI  DF  K       ++ L I DT+G   
Sbjct: 2   RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI-EDFHRKLYSIRGEVYQLDILDTSGNHP 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS-----PSDPDNFPFVVLG 124
           F ++        D  +LV+ +++ +SF+ +   RE+ L   S       +    P V+ G
Sbjct: 61  FPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICG 120

Query: 125 NKIDVD 130
           NK D D
Sbjct: 121 NKADRD 126

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 57.4 bits (139), Expect = 6e-11
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 7/121 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E      P    N P +++GNK D
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCP----NVPIILVGNKKD 116

Query: 129 V 129
           +
Sbjct: 117 L 117

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 16/131 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQY-----KATIGADFLTKEVQFEDRLFTLQIWD 63
           ++++++GD GVGK+SL+   V+++F         + TI AD         +R     I D
Sbjct: 3   VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADV------TPER-VPTTIVD 55

Query: 64  TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL 123
           T+ + + ++   A  R A+   LVY V+   + + +        +          P +++
Sbjct: 56  TSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERI----RTKWLPLIRRLGVKVPIILV 111

Query: 124 GNKIDVDGGNS 134
           GNK D+  G+S
Sbjct: 112 GNKSDLRDGSS 122

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 7/119 (5%)

Query: 13  ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS 72
           ++G    GKT+L+N   + +FS     T+G  F  ++V   +   T+++WD  GQ RF+S
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGN--VTIKVWDLGGQPRFRS 59

Query: 73  LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131
           +   + RG +  V V D    +  +   N   + L + S    +  P +VLGNK D+ G
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPS---LEGIPLLVLGNKNDLPG 115

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 8/123 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++ILG    GKT+++ +    +       TIG  F  + V +++      +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIVT-TIPTIG--FNVETVTYKN--VKFTVWDVGGQE 69

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             + L   ++   D  + V D       +     +EE     +  +  + P ++L NK D
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEA---KEELHALLNEEELADAPLLILANKQD 126

Query: 129 VDG 131
           + G
Sbjct: 127 LPG 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 5/121 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            +V++LGDSGVGK+SL N +    + +      G D   + V  +    TL ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP-DNFPFVVLGNKI 127
               L  +  +  D  V+VY V    SF+       E  IQ   +   ++ P +++GNK 
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKA----SELRIQLRRARQAEDIPIILVGNKS 116

Query: 128 D 128
           D
Sbjct: 117 D 117

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 53.1 bits (127), Expect = 2e-09
 Identities = 24/97 (24%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 65

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREE 105
           + ++    Y  +D  ++ +D++  ++ D+ L  W+ E
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE 102

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 51.6 bits (124), Expect = 7e-09
 Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 16/129 (12%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYK--------ATIGADFLTKEVQFEDRLFTLQIW 62
           V+ILG    GKT+ + Q    KFS  YK         T+G +  T EV        L  W
Sbjct: 2   VLILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKA----RLMFW 56

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           D  GQE  +SL   +Y  A+   ++Y ++S    +  N  +  F    +    +  P +V
Sbjct: 57  DLGGQEELRSLWDKYY--AESHGVIYVIDSTDR-ERFNESKSAFEKVINNEALEGVPLLV 113

Query: 123 LGNKIDVDG 131
           L NK D+  
Sbjct: 114 LANKQDLPD 122

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 50.1 bits (119), Expect = 5e-08
 Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 2/99 (2%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 73

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFL 107
           + ++    Y  +D  +L +D++  + FD+ L  WR E L
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEIL 112

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 10/129 (7%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK+ I+G+   GK++L+++Y+   +  Q ++  G  F  KEV  + +   L I D  G  
Sbjct: 1   LKLGIVGNLRSGKSALVHRYLTGSYV-QLESPEGGRF-KKEVLVDGQSHLLLIRDEGGA- 57

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
                   F    D  + V+ +    SF  +     +     + S+    P +++G +  
Sbjct: 58  ----PDAQFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISE---IPLILVGTQDA 110

Query: 129 VDGGNSRVV 137
           +   N RV+
Sbjct: 111 ISASNPRVI 119

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 9/129 (6%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
            PS R+ + ++++LG    GKT+++ Q  ++  S     T G  F  K VQ +   F L 
Sbjct: 9   KPSSRQEV-RILLLGLDNAGKTTILKQLASEDIS-HITPTQG--FNIKNVQADG--FKLN 62

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           +WD  GQ + +     ++   D  + V D    K F+       E L +   +     P 
Sbjct: 63  VWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLA---GVPV 119

Query: 121 VVLGNKIDV 129
           +V  NK D+
Sbjct: 120 LVFANKQDL 128

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 46.6 bits (110), Expect = 9e-07
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 7/121 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD+  GKT+L++ +    +   Y  T+  ++ T   + +     L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENY-TASFEIDKHRIELNMWDTSGSSY 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + ++    Y  +D  ++ +D++  ++ D+ L  W+ E         P N   V++G K+D
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGE----TQEFCP-NAKLVLVGCKLD 116

Query: 129 V 129
           +
Sbjct: 117 M 117

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 19/129 (14%)

Query: 9   LKVIILGDSGVGKTSLM-----NQYVNKKFSNQYKATIGADFLTKEVQF---EDRLFTLQ 60
           L +++LG    GKT+++     N++VN         T G  F T++++      +  T  
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEFVNTV------PTKG--FNTEKIKVSLGNAKGVTFH 55

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
            WD  GQE+ + L  ++ R  D  V V D   +   + +   + E       S+    P 
Sbjct: 56  FWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDV---ERMEEAKTELHKITKFSENQGVPV 112

Query: 121 VVLGNKIDV 129
           +VL NK D+
Sbjct: 113 LVLANKQDL 121

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 18/127 (14%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD---FLTKEVQFEDRLFTLQIWDTAG 66
           KVII+G    GKT+++ Q++  +       TIG++    + K ++F        +WD  G
Sbjct: 17  KVIIVGLDNAGKTTILYQFLLGE-VVHTSPTIGSNVEEIVYKNIRFL-------MWDIGG 68

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLG 124
           QE  +S    +Y   D  +LV D     S D   L   +EE     +  D      +VL 
Sbjct: 69  QESLRSSWNTYYTNTDAVILVID-----STDRERLPLTKEELYKMLAHEDLRKAVLLVLA 123

Query: 125 NKIDVDG 131
           NK D+ G
Sbjct: 124 NKQDLKG 130

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 43.2 bits (102), Expect = 7e-06
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           +++LG  G GKTSL++   +++       T G  F +  +  +D    +++ +  G +  
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTG--FNSVAIPTQD--AIMELLEIGGSQNL 57

Query: 71  QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEF--LIQASPSDPDNFPFVVLGNKID 128
           +     +  G+    L++ V+S  S   L   R+E   L+Q  P      P VVL NK D
Sbjct: 58  RKYWKRYLSGSQ--GLIFVVDSADSER-LPLARQELHQLLQHPPD----LPLVVLANKQD 110

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 43.2 bits (102), Expect = 8e-06
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 11/124 (8%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V++LG    GK++L+ +  + +       T+G  F  + +Q E +  +L +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELV-TTIPTVG--FNVEMLQLE-KHLSLTVWDVGGQEK 56

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPD--NFPFVVLGNKI 127
            +++   +    D  V V D +     D      +  L      +      P V+L NK 
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHIL-----KNEHIKGVPVVLLANKQ 111

Query: 128 DVDG 131
           D+ G
Sbjct: 112 DLPG 115

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 6  RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
          R +    +LG  G GK++L+  ++ + FS N Y  TI   +    V+   +   L + + 
Sbjct: 2  RNVFLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQEKYLILREV 61

Query: 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSF 96
             E    L  A     D   LVYD +   SF
Sbjct: 62 GEDEEAILLNDAELAACDVACLVYDSSDPNSF 93

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 25/133 (18%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSN-------QYKATIGADFLTKEVQFEDRLFTLQIW 62
           KV+++G  G GK+S M   +   FSN       +  ATI    + +         TL +W
Sbjct: 1   KVLLMGLRGSGKSS-MRSII---FSNYSPRDTLRLGATID---VEQSHVRFLGNLTLNLW 53

Query: 63  DTAGQERFQSLGVAFYRGA---DCCVLVY--DVNSMKSFDNLNNWRE--EFLIQASPSDP 115
           D  GQ+ F    +   +     +  VL+Y  DV S +  ++L    +  E L Q SP   
Sbjct: 54  DCPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALYQYSP--- 110

Query: 116 DNFPFVVLGNKID 128
            N    VL +K+D
Sbjct: 111 -NAKVFVLIHKMD 122

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 40.8 bits (95), Expect = 7e-05
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 8/123 (6%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V+ LG  G GKT+++ +    +F  Q   TIG  F  + V++++  FT  IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIG--FNVETVEYKNLKFT--IWDVGGKHK 55

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            + L   +Y      V V D +     D ++    E     +  +  +   ++  NK DV
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHR---DRVSEAHSELAKLLTEKELRDALLLIFANKQDV 112

Query: 130 DGG 132
            G 
Sbjct: 113 AGA 115

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 24/129 (18%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA--------DFLTKEVQFEDRLFTLQ 60
           ++++++G    GKT+++           YK  +G          F  + V +++  FT  
Sbjct: 14  MRILMVGLDAAGKTTIL-----------YKLKLGESVTTIPTIGFNVETVTYKNISFT-- 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           +WD  GQ++ + L   +Y      + V D N     D ++  REE     +  +  +   
Sbjct: 61  VWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDR---DRIDEAREELHRMLNEDELRDAVI 117

Query: 121 VVLGNKIDV 129
           +V  NK D+
Sbjct: 118 LVFANKQDL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 28/138 (20%)

Query: 4   RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI----GADFLTKEVQFEDRLFTL 59
           +     K+ I+G   VGK+SL+N         Q +A +    G      E  FE     +
Sbjct: 199 KLDDGFKLAIVGSPNVGKSSLLN-----ALLKQDRAIVSDIKGTTRDVVEGDFELNGILI 253

Query: 60  QIWDTAG----QERFQSLGVAFYRG----ADCCVLVYDVNSMKSFDNLNNWREE-FLIQA 110
           ++ DTAG     +  + LG+         AD  + V D +            ++ FLI  
Sbjct: 254 KLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQ--------PLTKDDFLI-- 303

Query: 111 SPSDPDNFPFVVLGNKID 128
              +    PF+++ NKID
Sbjct: 304 IDLNKSKKPFILVLNKID 321

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 10  KVIILGDSGVGKTSL-----MNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           +++ILG  G GKT++     + + V          TIG  F  + V +++  F  Q+WD 
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVV------TTIPTIG--FNVETVTYKNLKF--QVWDL 50

Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
            GQ   +     +Y  ++   ++Y V+S    D L   + E        +  +   +V  
Sbjct: 51  GGQTSIRPYWRCYY--SNTDAIIYVVDSTDR-DRLGISKSELHAMLEEEELKDAVLLVFA 107

Query: 125 NKIDVDG 131
           NK D+ G
Sbjct: 108 NKQDMPG 114

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 22/130 (16%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--FLTKEVQFEDRLFTLQIWDTAG 66
           +++++LG    GKT+++     KKF+ +  +TI     F  K +++    + L IWD  G
Sbjct: 15  MRILMLGLDNAGKTTIL-----KKFNGEDISTISPTLGFNIKTLEYNG--YKLNIWDVGG 67

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-----WREEFLIQASPSDPDNFPFV 121
           Q+  +S    ++   D  + V D +     ++          EE L  A+         +
Sbjct: 68  QKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGAT--------LL 119

Query: 122 VLGNKIDVDG 131
           +  NK D+ G
Sbjct: 120 IFANKQDLPG 129

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 22/134 (16%)

Query: 10  KVIILGDSGVGKTSLMNQYVNK------------KFSNQYKATIGADFLTKEVQFEDRLF 57
           K++++G  G GKT+ +    +K                +   T+  DF + E+   D   
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDT 68

Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            + ++ T GQERF+ +     RGA   +++ D +   +F        E +I    S  + 
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF------HAEEIIDFLTSR-NP 121

Query: 118 FPFVVLGNKIDVDG 131
            P VV  NK D+  
Sbjct: 122 IPVVVAINKQDLFD 135

Length = 187

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 12/130 (9%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           +++LG    GKT+++NQ    K SN     I          F+    +   +D +GQ ++
Sbjct: 2   ILVLGLDNSGKTTIINQL---KPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKY 58

Query: 71  QSLGVAFYRGADCCVLVYDVNSMKSFDNLNN--WREEF--LIQASPSDPDNFPFVVLGNK 126
           + L   +Y+     + V D     S D L     ++E   L+          P +   NK
Sbjct: 59  RGLWEHYYKNIQGIIFVID-----SSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANK 113

Query: 127 IDVDGGNSRV 136
           +D+    + V
Sbjct: 114 MDLPDALTAV 123

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 40  TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNL 99
           TIG  F  + V++++  FT  +WD  GQ++ + L   +Y+  +  + V D N     + +
Sbjct: 48  TIG--FNVETVEYKNLKFT--MWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDR---ERI 100

Query: 100 NNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            + REE     S  +  +   +V  NK D+
Sbjct: 101 GDAREELERMLSEDELRDAVLLVFANKQDL 130

Length = 182

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 24/129 (18%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA-DFLTKEVQFE--DRLFTLQIWDTAG 66
           +V ++G   VGK++L+N     K      A +      T++           + + DT G
Sbjct: 1   RVALVGRPNVGKSTLINALTGAK-----VAIVSDYPGTTRDPILGVLGLGRQIILVDTPG 55

Query: 67  --QERFQSLGVAFY-------RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
             +   +  GV  +       R AD  +LV D +     + L    EE L +        
Sbjct: 56  LIEGASEGKGVEGFNRFLEAIREADLILLVVDAS-----EGLTEDDEEILEELEKL--PK 108

Query: 118 FPFVVLGNK 126
            P +++ NK
Sbjct: 109 KPIILVLNK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.97
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.97
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.97
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.97
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.97
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.97
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.97
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.97
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.97
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.97
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.96
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.96
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.96
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.96
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.96
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.96
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.96
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.96
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.96
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.96
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.96
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.96
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.96
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.96
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.96
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.96
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.96
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.96
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.96
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.96
PTZ00369	189	Ras-like protein; Provisional	99.96
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.96
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.96
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.96
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.96
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.96
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.96
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.96
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.96
PLN03110	216	Rab GTPase; Provisional	99.95
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.95
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.95
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.95
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.95
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.95
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.95
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.95
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.95
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.95
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.95
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.95
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.95
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.95
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.95
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.95
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.95
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.95
PLN03108	210	Rab family protein; Provisional	99.95
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.95
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.95
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.95
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.95
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.95
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.95
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.94
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.94
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.94
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.94
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.94
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.94
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.94
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.94
PLN03118	211	Rab family protein; Provisional	99.94
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.94
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.94
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.94
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.94
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.94
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.94
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.94
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.93
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.93
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.93
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.93
KOG0395	196	consensus Ras-related GTPase [General function pre	99.93
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.93
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.93
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.93
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.93
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.93
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.93
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.93
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.93
PLN00223	181	ADP-ribosylation factor; Provisional	99.93
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.93
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.92
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.92
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.92
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.92
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.92
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.92
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.92
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.92
PTZ00133	182	ADP-ribosylation factor; Provisional	99.92
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.91
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.91
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.91
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.9
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.9
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.9
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.9
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.9
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.9
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.9
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.9
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.9
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.9
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.89
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.89
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.89
COG1100	219	GTPase SAR1 and related small G proteins [General	99.89
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.87
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.87
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.87
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.87
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.86
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.85
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.85
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.85
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.85
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.85
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.84
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.84
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.84
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.83
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.82
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.81
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.81
PTZ00099	176	rab6; Provisional	99.81
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.81
PRK12299	335	obgE GTPase CgtA; Reviewed	99.81
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.8
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.8
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.79
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.79
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.79
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.79
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.79
PRK03003	472	GTP-binding protein Der; Reviewed	99.79
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.78
PRK04213	201	GTP-binding protein; Provisional	99.78
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.78
PRK15494	339	era GTPase Era; Provisional	99.78
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.77
PRK11058	426	GTPase HflX; Provisional	99.77
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.77
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.77
KOG1673	205	consensus Ras GTPases [General function prediction	99.77
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.77
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.77
cd00881	189	GTP_translation_factor GTP translation factor fami	99.77
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.76
PRK05306	787	infB translation initiation factor IF-2; Validated	99.76
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.76
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.75
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.75
PRK03003	472	GTP-binding protein Der; Reviewed	99.75
PRK00093	435	GTP-binding protein Der; Reviewed	99.75
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.75
PRK12297	424	obgE GTPase CgtA; Reviewed	99.75
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.75
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.74
CHL00189	742	infB translation initiation factor 2; Provisional	99.74
PRK12296	500	obgE GTPase CgtA; Reviewed	99.74
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.73
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.73
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.73
PRK00089	292	era GTPase Era; Reviewed	99.73
PRK05433	600	GTP-binding protein LepA; Provisional	99.73
PRK10218	607	GTP-binding protein; Provisional	99.73
COG1084	346	Predicted GTPase [General function prediction only	99.73
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.73
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.72
PRK12298	390	obgE GTPase CgtA; Reviewed	99.72
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.72
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.71
PRK12317	425	elongation factor 1-alpha; Reviewed	99.71
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.71
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.7
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.7
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.7
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.7
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.7
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.7
COG2229	187	Predicted GTPase [General function prediction only	99.7
PRK04004	586	translation initiation factor IF-2; Validated	99.69
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.69
COG1159	298	Era GTPase [General function prediction only]	99.69
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.69
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.69
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.69
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.69
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.69
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.69
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.68
PRK00093	435	GTP-binding protein Der; Reviewed	99.68
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.68
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.68
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.68
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.68
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.67
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.66
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.66
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.65
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.65
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.65
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.64
PRK13351	687	elongation factor G; Reviewed	99.64
COG0218	200	Predicted GTPase [General function prediction only	99.64
PRK12735	396	elongation factor Tu; Reviewed	99.63
COG1160	444	Predicted GTPases [General function prediction onl	99.63
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.63
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.62
PLN03126	478	Elongation factor Tu; Provisional	99.61
CHL00071	409	tufA elongation factor Tu	99.61
COG0486	454	ThdF Predicted GTPase [General function prediction	99.61
PRK12736	394	elongation factor Tu; Reviewed	99.61
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.6
PLN00043	447	elongation factor 1-alpha; Provisional	99.6
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.6
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.6
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.6
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.59
PRK00007	693	elongation factor G; Reviewed	99.59
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.58
PRK12739	691	elongation factor G; Reviewed	99.58
PLN03127	447	Elongation factor Tu; Provisional	99.57
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.56
PRK00049	396	elongation factor Tu; Reviewed	99.56
PTZ00141	446	elongation factor 1- alpha; Provisional	99.56
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.56
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.56
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.56
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.55
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.54
COG1160	444	Predicted GTPases [General function prediction onl	99.54
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.54
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.53
COG3596	296	Predicted GTPase [General function prediction only	99.53
PTZ00416	836	elongation factor 2; Provisional	99.52
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.52
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.5
COG2262	411	HflX GTPases [General function prediction only]	99.5
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.5
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.49
PRK07560	731	elongation factor EF-2; Reviewed	99.49
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.49
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.48
COG1163	365	DRG Predicted GTPase [General function prediction	99.46
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.46
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.45
PRK12740	668	elongation factor G; Reviewed	99.44
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.43
KOG0090	238	consensus Signal recognition particle receptor, be	99.43
KOG1145	683	consensus Mitochondrial translation initiation fac	99.43
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.41
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.39
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.39
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.39
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.38
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.38
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.37
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.36
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.35
COG0536	369	Obg Predicted GTPase [General function prediction	99.34
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.34
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.34
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.33
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.31
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.31
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.31
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.3
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.3
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.29
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.28
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.23
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.21
PRK09602	396	translation-associated GTPase; Reviewed	99.19
PRK09866	741	hypothetical protein; Provisional	99.18
PTZ00258	390	GTP-binding protein; Provisional	99.16
PRK14845	1049	translation initiation factor IF-2; Provisional	99.16
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.15
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.13
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.12
PRK09601	364	GTP-binding protein YchF; Reviewed	99.11
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.08
KOG0467	887	consensus Translation elongation factor 2/ribosome	99.06
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.05
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.03
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.0
PRK13768	253	GTPase; Provisional	98.98
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.98
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.96
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.95
KOG0461	522	consensus Selenocysteine-specific elongation facto	98.94
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.93
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.91
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.91
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.9
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.89
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.89
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.88
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.84
KOG0410	410	consensus Predicted GTP binding protein [General f	98.84
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.8
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.76
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.76
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.75
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.73
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.73
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.72
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.7
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.7
COG1161	322	Predicted GTPases [General function prediction onl	98.67
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.66
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.65
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.65
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.62
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.62
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.6
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.6
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.6
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.6
PRK12288	347	GTPase RsgA; Reviewed	98.59
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.58
KOG2486	320	consensus Predicted GTPase [General function predi	98.57
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.57
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.55
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.55
cd03112	158	CobW_like The function of this protein family is u	98.5
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.49
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.47
PRK12289	352	GTPase RsgA; Reviewed	98.45
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.44
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.43
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.42
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.41
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.4
PRK13796	365	GTPase YqeH; Provisional	98.4
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.36
COG1162	301	Predicted GTPases [General function prediction onl	98.33
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.29
PRK00098	298	GTPase RsgA; Reviewed	98.28
KOG0460	449	consensus Mitochondrial translation elongation fac	98.26
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.25
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.25
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.22
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.22
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.17
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.16
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.15
COG3523	1188	IcmF Type VI protein secretion system component Va	98.15
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.13
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.12
cd03114	148	ArgK-like The function of this protein family is u	98.11
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.08
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.05
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.03
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.03
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.03
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.02
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	98.0
KOG1143	591	consensus Predicted translation elongation factor	97.97
PRK10416	318	signal recognition particle-docking protein FtsY;	97.93
KOG2484	435	consensus GTPase [General function prediction only	97.9
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.89
PRK13695	174	putative NTPase; Provisional	97.82
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.8
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.79
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.76
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.76
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.74
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.74
PRK08118	167	topology modulation protein; Reviewed	97.73
cd03111	106	CpaE_like This protein family consists of proteins	97.72
PRK14974	336	cell division protein FtsY; Provisional	97.72
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.72
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.71
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.71
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.71
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.7
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.67
PRK07261	171	topology modulation protein; Provisional	97.67
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.65
PF05729	166	NACHT: NACHT domain	97.65
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.64
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.62
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.62
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.61
PRK14738	206	gmk guanylate kinase; Provisional	97.57
PRK10867	433	signal recognition particle protein; Provisional	97.57
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.56
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.56
TIGR00959	428	ffh signal recognition particle protein. This mode	97.55
COG0523	323	Putative GTPases (G3E family) [General function pr	97.55
PRK12289	352	GTPase RsgA; Reviewed	97.54
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.54
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.53
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.52
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.52
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.52
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.51
PRK06217	183	hypothetical protein; Validated	97.51
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.49
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.48
PRK00098	298	GTPase RsgA; Reviewed	97.47
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.46
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.46
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.45
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.44
PRK14737	186	gmk guanylate kinase; Provisional	97.43
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.41
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.41
PRK04195	482	replication factor C large subunit; Provisional	97.4
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.39
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.39
PF00004	132	AAA: ATPase family associated with various cellula	97.39
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.39
smart00382	148	AAA ATPases associated with a variety of cellular	97.39
PRK01889	356	GTPase RsgA; Reviewed	97.38
KOG1533	290	consensus Predicted GTPase [General function predi	97.38
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	97.37
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.37
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.36
PRK03839	180	putative kinase; Provisional	97.35
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.35
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.35
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.35
PRK05480	209	uridine/cytidine kinase; Provisional	97.34
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.34
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.33
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	97.33
PRK07429	327	phosphoribulokinase; Provisional	97.32
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.32
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.32
PRK14530	215	adenylate kinase; Provisional	97.31
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.31
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.3
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.29
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.29
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.29
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.28
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.28
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.26
PRK12288	347	GTPase RsgA; Reviewed	97.26
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.26
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.25
PRK10646	153	ADP-binding protein; Provisional	97.24
PRK14532	188	adenylate kinase; Provisional	97.24
PRK08233	182	hypothetical protein; Provisional	97.24
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.24
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.23
PRK02496	184	adk adenylate kinase; Provisional	97.23
KOG0466	466	consensus Translation initiation factor 2, gamma s	97.23
PTZ00088	229	adenylate kinase 1; Provisional	97.22
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.21
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.2
PRK13949	169	shikimate kinase; Provisional	97.2
PRK06547	172	hypothetical protein; Provisional	97.19
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.19
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.18
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.18
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.18
PRK14531	183	adenylate kinase; Provisional	97.17
PRK00300	205	gmk guanylate kinase; Provisional	97.17
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.17
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.16
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.15
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.15
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.15
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.15
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.14
PLN02200	234	adenylate kinase family protein	97.13
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.13
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.13
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.12
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.12
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.12
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.11
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.11
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.11
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.11
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.11
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.1

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.3e-34  Score=188.00  Aligned_cols=146  Identities=39%  Similarity=0.696  Sum_probs=132.5

Q ss_pred             CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec
Q 031598            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (156)
Q Consensus         1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (156)
                      |....++.+||+++|++|+|||.|+.||....+.+.+..|.|.+.....+.++++..+++||||.||+.|+.+...++++
T Consensus         2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~   81 (205)
T KOG0084|consen    2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG   81 (205)
T ss_pred             CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhcccc
Q 031598           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYS  154 (156)
Q Consensus        81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~  154 (156)
                      +|++|+|||+++.+||..+..|+.++.++...    +.|.++||||+|+.++  +.++.++.+.  +....+.+
T Consensus        82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~----~v~~lLVGNK~Dl~~~--~~v~~~~a~~--fa~~~~~~  147 (205)
T KOG0084|consen   82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASE----NVPKLLVGNKCDLTEK--RVVSTEEAQE--FADELGIP  147 (205)
T ss_pred             CCeEEEEEEcccHHHhhhHHHHHHHhhhhccC----CCCeEEEeeccccHhh--eecCHHHHHH--HHHhcCCc
Confidence            99999999999999999999999999887765    7899999999999998  8787776633  44444444

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=4.9e-33  Score=180.54  Aligned_cols=150  Identities=80%  Similarity=1.245  Sum_probs=138.0

Q ss_pred             CCc-ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhhee
Q 031598            1 MPS-RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR   79 (156)
Q Consensus         1 ~~~-~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   79 (156)
                      |++ .+...+||+++|++|+|||||++++.+.++...+..+.+.+...+.+.+++..+.++||||.|++.|.++...+++
T Consensus         1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR   80 (210)
T KOG0394|consen    1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR   80 (210)
T ss_pred             CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence            554 5577899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhcc
Q 031598           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRK  152 (156)
Q Consensus        80 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~  152 (156)
                      ++|-.+++||++++.+|+.+..|+++++.+.....+..-|++++|||+|+.+.+.|+++.+..+.  ||..++
T Consensus        81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~--WC~s~g  151 (210)
T KOG0394|consen   81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQT--WCKSKG  151 (210)
T ss_pred             CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHH--HHHhcC
Confidence            99999999999999999999999999999999888889999999999999987667777765554  887654

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.1e-31  Score=174.52  Aligned_cols=135  Identities=41%  Similarity=0.716  Sum_probs=124.5

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      .-+..|++++|+.++||||||.+|..+.+..++.++.|.+.....+.+.+..+++++|||.||+.|+.+.+.|++.+.++
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va   98 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   98 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence            34459999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccc
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGS  144 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~  144 (156)
                      ++|||+++..+|+....|++.++.....   ++.-+++||||.||.++  ++++.+|...
T Consensus        99 viVyDit~~~Sfe~t~kWi~dv~~e~gs---~~viI~LVGnKtDL~dk--rqvs~eEg~~  153 (221)
T KOG0094|consen   99 VIVYDITDRNSFENTSKWIEDVRRERGS---DDVIIFLVGNKTDLSDK--RQVSIEEGER  153 (221)
T ss_pred             EEEEeccccchHHHHHHHHHHHHhccCC---CceEEEEEcccccccch--hhhhHHHHHH
Confidence            9999999999999999999999865443   35778899999999999  8888887663

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.9e-31  Score=172.16  Aligned_cols=134  Identities=44%  Similarity=0.758  Sum_probs=123.6

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      +...+|++++|+.++|||||+.||...++.+...++.+.-+.+..+...+..+.|.||||.|++.|..+.+.|+++++++
T Consensus         2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA   81 (200)
T KOG0092|consen    2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA   81 (200)
T ss_pred             CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence            45679999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccc
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGS  144 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~  144 (156)
                      |+|||+.+.+||..++.|.+++.+...    +++-+.+||||+||.+.  |++..+|.+.
T Consensus        82 ivvYDit~~~SF~~aK~WvkeL~~~~~----~~~vialvGNK~DL~~~--R~V~~~ea~~  135 (200)
T KOG0092|consen   82 IVVYDITDEESFEKAKNWVKELQRQAS----PNIVIALVGNKADLLER--REVEFEEAQA  135 (200)
T ss_pred             EEEEecccHHHHHHHHHHHHHHHhhCC----CCeEEEEecchhhhhhc--ccccHHHHHH
Confidence            999999999999999999999987665    37778899999999997  7888777665

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8.5e-31  Score=170.47  Aligned_cols=143  Identities=36%  Similarity=0.640  Sum_probs=130.8

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ....+|++++|+.|+|||+|+.+|....+.+....|.+.++....+++++..++++||||.|++.+......+++.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhccccc
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYSL  155 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~~  155 (156)
                      ++|||+.++++|..+..|+..++.+...    |.-++++|||+||...  |.++.||.+.  +++++++.+
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~----NmvImLiGNKsDL~~r--R~Vs~EEGea--FA~ehgLif  145 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNE----NMVIMLIGNKSDLEAR--REVSKEEGEA--FAREHGLIF  145 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCC----CcEEEEEcchhhhhcc--ccccHHHHHH--HHHHcCcee
Confidence            9999999999999999999999877643    8889999999999998  7777776555  788777654

>cd04121 Rab40 Rab40 subfamily

Probab=99.97  E-value=2.9e-30  Score=174.63  Aligned_cols=130  Identities=32%  Similarity=0.578  Sum_probs=114.0

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ....+||+++|..|+|||||+.+|.+..+...+.++.+.++....+.+++..+.+++|||+|++.+..++..+++.+|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            34579999999999999999999999888777777777777777778888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE  141 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e  141 (156)
                      ++|||++++.+|+.+..|++.+.....     +.|++|||||+|+.+.  +++..++
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~~~-----~~piilVGNK~DL~~~--~~v~~~~  132 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEHAP-----GVPKILVGNRLHLAFK--RQVATEQ  132 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECccchhc--cCCCHHH
Confidence            999999999999999999999976542     7899999999999875  5555443

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.3e-30  Score=171.29  Aligned_cols=144  Identities=37%  Similarity=0.667  Sum_probs=131.1

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      ..+..+||+++|+++||||+++.+|..+.+...+..+.+.++....+..++....+++|||.||+.+..+...|++++++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhccccc
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYSL  155 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~~  155 (156)
                      +++|||+.+..+|+.+..|+..+..+...    .+|.++||||+|+.++  |+++.+..+.  .+...+.+|
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~----~v~~~LvGNK~D~~~~--R~V~~e~ge~--lA~e~G~~F  151 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASD----DVVKILVGNKCDLEEK--RQVSKERGEA--LAREYGIKF  151 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCC----CCcEEEeecccccccc--ccccHHHHHH--HHHHhCCeE
Confidence            99999999999999999999999776654    8899999999999997  8888876555  555555544

>cd04120 Rab12 Rab12 subfamily

Probab=99.97  E-value=7.5e-30  Score=174.13  Aligned_cols=126  Identities=41%  Similarity=0.748  Sum_probs=111.6

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +.|+++|..|+|||||+++|....+...+.++.+.++....+.+++..+.+++|||+|++.+..++..+++.+|++++||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            47899999999999999999999998888888888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  140 (156)
                      |++++++|+.+..|+..+.....    .+.|+++||||+|+.++  +++..+
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~----~~~piilVgNK~DL~~~--~~v~~~  126 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLDCETD--REISRQ  126 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cccCHH
Confidence            99999999999999987765432    37899999999999765  545444

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.4e-30  Score=169.19  Aligned_cols=144  Identities=34%  Similarity=0.633  Sum_probs=129.4

Q ss_pred             cccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheeccc
Q 031598            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (156)
Q Consensus         3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   82 (156)
                      ..-...+||+++|++++|||-|+.||..+.+..+...+.+....+..+.++++.+..+||||.||+.|+.+..++++++.
T Consensus         9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv   88 (222)
T KOG0087|consen    9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV   88 (222)
T ss_pred             cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence            34566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhcccc
Q 031598           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYS  154 (156)
Q Consensus        83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~  154 (156)
                      ++++|||++++.+|+.+..|+.+++.+...    ++++++||||+||.+-  |.++.++.+.  .....+++
T Consensus        89 GAllVYDITr~~Tfenv~rWL~ELRdhad~----nivimLvGNK~DL~~l--raV~te~~k~--~Ae~~~l~  152 (222)
T KOG0087|consen   89 GALLVYDITRRQTFENVERWLKELRDHADS----NIVIMLVGNKSDLNHL--RAVPTEDGKA--FAEKEGLF  152 (222)
T ss_pred             eeEEEEechhHHHHHHHHHHHHHHHhcCCC----CeEEEEeecchhhhhc--cccchhhhHh--HHHhcCce
Confidence            999999999999999999999999876643    8999999999999986  8888877665  33334443

>cd04122 Rab14 Rab14 subfamily

Probab=99.97  E-value=3.3e-29  Score=166.43  Aligned_cols=127  Identities=37%  Similarity=0.711  Sum_probs=110.3

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .+||+++|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.++++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999988877777877777677777888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  140 (156)
                      ||++++.+|+.+..|+..+.....    ++.|+++|+||+|+.++  +.+..+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iiiv~nK~Dl~~~--~~~~~~  128 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTN----PNTVIFLIGNKADLEAQ--RDVTYE  128 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cCcCHH
Confidence            999999999999999988765432    26899999999999876  444433

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.97  E-value=4.5e-29  Score=170.64  Aligned_cols=124  Identities=39%  Similarity=0.769  Sum_probs=109.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+|||+|++.+..++..+++.++++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999998888888888887777777777 7778999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||++++++|+.+..|+..+..........++|+++|+||+|+.+.
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~  125 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKR  125 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccc
Confidence            999999999999999998876554333457899999999999854

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.97  E-value=4.4e-29  Score=168.03  Aligned_cols=121  Identities=22%  Similarity=0.531  Sum_probs=107.6

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ++..+||+++|++++|||||+++|....+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+...+++.+|++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            35578999999999999999999999998888888887554 45667888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           85 VLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        85 l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      ++|||++++.+|+.+ ..|...+.....     +.|+++||||+||.+
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-----~~piilVgNK~DL~~  123 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRT  123 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEeEChhhhc
Confidence            999999999999997 789998876542     689999999999975

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.3e-30  Score=161.18  Aligned_cols=147  Identities=38%  Similarity=0.672  Sum_probs=132.8

Q ss_pred             CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec
Q 031598            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (156)
Q Consensus         1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (156)
                      |++.-+..+|++++|+.|+|||.|+++|...++.+....+.+.+..+..+.+.++.++++||||.|++.|+.....+++.
T Consensus         2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG   81 (214)
T KOG0086|consen    2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG   81 (214)
T ss_pred             cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            45667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhccccc
Q 031598           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYSL  155 (156)
Q Consensus        81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~~  155 (156)
                      +.+.++|||+.++++|+++..|+...+-....    ++.++++|||.||..+  +++..+|...  +|.+.++.+
T Consensus        82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~----nIvviL~GnKkDL~~~--R~VtflEAs~--FaqEnel~f  148 (214)
T KOG0086|consen   82 AAGALLVYDITSRDSFNALTNWLTDARTLASP----NIVVILCGNKKDLDPE--REVTFLEASR--FAQENELMF  148 (214)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHhhCCC----cEEEEEeCChhhcChh--hhhhHHHHHh--hhcccceee
Confidence            99999999999999999999999998765543    8889999999999998  8888887655  666666544

>cd04131 Rnd Rnd subfamily

Probab=99.96  E-value=8.9e-29  Score=166.11  Aligned_cols=117  Identities=22%  Similarity=0.550  Sum_probs=104.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+...+++.+|++++||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            6899999999999999999999998888888886654 456677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           89 DVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      |++++++|+.+ ..|+..+.....     +.|+++||||+||.+
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~~-----~~~iilVgnK~DL~~  119 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFCP-----NTKVLLVGCKTDLRT  119 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHCC-----CCCEEEEEEChhhhc
Confidence            99999999996 789998876642     689999999999965

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04133 Rop_like Rop subfamily

Probab=99.96  E-value=1.8e-28  Score=164.17  Aligned_cols=118  Identities=36%  Similarity=0.668  Sum_probs=105.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|.+++|||||+.+|....+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+...+++.++++++||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6899999999999999999999999888888887655 455677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++.+|+.+ ..|+..+.....     +.|+++||||+|+.++
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~-----~~piilvgnK~Dl~~~  120 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAP-----NVPIVLVGTKLDLRDD  120 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeChhhccC
Confidence            99999999998 689998875532     7899999999999764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.96  E-value=1.5e-28  Score=163.50  Aligned_cols=122  Identities=40%  Similarity=0.788  Sum_probs=109.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      ..+||+++|++++|||||++++.+.++...+.++.+.++....+..++..+.+++|||||++.+...+..+++.+|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            46899999999999999999999999888888888877777777788888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||++++.+|..+..|+..+.....    .+.|+++|+||+|+.+.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~Dl~~~  123 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHAS----EDVERMLVGNKCDMEEK  123 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEECcccccc
Confidence            9999999999999999999876532    37899999999999865

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.96  E-value=1.4e-28  Score=164.40  Aligned_cols=128  Identities=26%  Similarity=0.520  Sum_probs=108.1

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+++|||+|++.+..++..+++.+|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999999999999988877777776444 34466788888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE  141 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e  141 (156)
                      ||++++.+|..+..|+..+.+....   .++|+++|+||+|+.++  ++++.++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~---~~~piilvgNK~Dl~~~--~~v~~~~  129 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLT---EDIPLVLVGNKVDLESQ--RQVTTEE  129 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCC---CCCCEEEEEEChhhhhc--CccCHHH
Confidence            9999999999999888777654322   37899999999999865  5555443

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01865 Rab3 Rab3 subfamily

Probab=99.96  E-value=2.6e-28  Score=161.97  Aligned_cols=120  Identities=38%  Similarity=0.752  Sum_probs=106.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++++|||||++++.+.++...+.++.+.++....+..++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999987777788777666666666777789999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++++++.+..|+..+.....    .+.|+++|+||+|+.+.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~~~  121 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSW----DNAQVILVGNKCDMEDE  121 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCCCEEEEEECcccCcc
Confidence            99999999999999998865442    26799999999999765

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.96  E-value=3.3e-28  Score=162.34  Aligned_cols=120  Identities=38%  Similarity=0.760  Sum_probs=107.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d   89 (156)
                      ||+++|++|+|||||++++.++.+...+.++.+.++....+.+.+..+.+++|||||++.+..++..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999988888998888877778888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++.++..+..|+..+......   ...|+++|+||+|+.++
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~---~~~~iilVgnK~Dl~~~  121 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDP---SSVLLFLVGTKKDLSSP  121 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEEChhcCcc
Confidence            99999999999999988655332   25689999999999765

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=6.4e-29  Score=158.23  Aligned_cols=134  Identities=40%  Similarity=0.686  Sum_probs=121.9

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ....+||+++|.+|+|||||+.+|....+.+....+.+.+.....+.+++.++++.||||.|++.|+...+.+++++.++
T Consensus         8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi   87 (209)
T KOG0080|consen    8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI   87 (209)
T ss_pred             cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence            45679999999999999999999999999888888899999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecccc
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEG  143 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~  143 (156)
                      ++|||+..+++|..+..|+.++..+....   ++-.++|+||+|...+  |.+..+|..
T Consensus        88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~---diikmlVgNKiDkes~--R~V~reEG~  141 (209)
T KOG0080|consen   88 ILVYDVTSRDTFVKLDIWLKELDLYSTNP---DIIKMLVGNKIDKESE--RVVDREEGL  141 (209)
T ss_pred             EEEEEccchhhHHhHHHHHHHHHhhcCCc---cHhHhhhcccccchhc--ccccHHHHH
Confidence            99999999999999999999998887654   5556799999998876  777776543

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=3.2e-28  Score=165.90  Aligned_cols=124  Identities=29%  Similarity=0.531  Sum_probs=107.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-----CeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-----DRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      +||+++|++++|||||++++.+..+...+.++.+.+.....+.++     +..+.+.+|||+|++.+..++..+++.+|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            489999999999999999999999888888888877766666653     466899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCC---------------CCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASP---------------SDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||++++.+|+.+..|+..+......               ....+.|+++||||+|+.++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~  144 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE  144 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence            99999999999999999999999764311               12247899999999999865

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.96  E-value=2.2e-28  Score=162.17  Aligned_cols=124  Identities=32%  Similarity=0.649  Sum_probs=110.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++++|||||++++.+.++...+.++.+.++....+..++..+.+++|||+|++.+..++..+++.+|++++||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999988888888888877777888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCC-CCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPS-DPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |.+++.+++.+..|+..+....... ...+.|+++|+||+|+.++
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  125 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH  125 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccc
Confidence            9999999999999999998765421 1236899999999999753

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.96  E-value=3.2e-28  Score=168.86  Aligned_cols=119  Identities=21%  Similarity=0.500  Sum_probs=106.1

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      ..+||+++|++++|||+|+++|.+..+...+.++.+..+ ...+.+++..+.+.||||+|++.+..+...+++.+|++++
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl   90 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL   90 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence            468999999999999999999999999888888887665 4456778889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           87 VYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        87 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      |||++++.+|+.+ ..|+..+.....     +.|+++||||+|+.+
T Consensus        91 VyDit~~~Sf~~~~~~w~~~i~~~~~-----~~piilVgNK~DL~~  131 (232)
T cd04174          91 CFDISRPETVDSALKKWKAEIMDYCP-----STRILLIGCKTDLRT  131 (232)
T ss_pred             EEECCChHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECccccc
Confidence            9999999999984 789998876542     679999999999975

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04127 Rab27A Rab27a subfamily

Probab=99.96  E-value=2.7e-28  Score=163.91  Aligned_cols=123  Identities=43%  Similarity=0.743  Sum_probs=106.8

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC----------CeEEEEEEEeCCCcccccchhhh
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVA   76 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~   76 (156)
                      +.+||+++|++|||||||++++.+..+...+.++.+.++....+.+.          +..+.+.+|||||++.+...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            56899999999999999999999999888888888777766555543          35688999999999999999999


Q ss_pred             heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++.+|++++|||++++++|..+..|+..+......   .+.|+++|+||+|+.++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piiiv~nK~Dl~~~  135 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYC---ENPDIVLCGNKADLEDQ  135 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEeCccchhc
Confidence            999999999999999999999999999988765432   26799999999999865

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=4.4e-29  Score=157.00  Aligned_cols=133  Identities=41%  Similarity=0.723  Sum_probs=120.1

Q ss_pred             CcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecc
Q 031598            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA   81 (156)
Q Consensus         2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (156)
                      +..-....+.+|+|++|+|||+|+.+|....+...+..+.|.+.....+.+++..+.++||||.|++.|+.+...++++.
T Consensus         2 ar~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgt   81 (198)
T KOG0079|consen    2 ARDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGT   81 (198)
T ss_pred             cccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCC
Confidence            33344567889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE  141 (156)
Q Consensus        82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e  141 (156)
                      +++++|||+.+.+||..+..|++++.+.+.     ..|-++||||.|.++-  +.+..++
T Consensus        82 hgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-----sv~~vLVGNK~d~~~R--rvV~t~d  134 (198)
T KOG0079|consen   82 HGVIVVYDVTNGESFNNVKRWLEEIRNNCD-----SVPKVLVGNKNDDPER--RVVDTED  134 (198)
T ss_pred             ceEEEEEECcchhhhHhHHHHHHHHHhcCc-----cccceecccCCCCccc--eeeehHH
Confidence            999999999999999999999999987665     7889999999999986  4444443

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.96  E-value=4.3e-28  Score=160.95  Aligned_cols=121  Identities=40%  Similarity=0.805  Sum_probs=108.0

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            48999999999999999999999988777778877777777777888888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||++++++|..+..|+..+.....    .+.|+++|+||+|+..+
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~  122 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLTDK  122 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEEChhcccc
Confidence            999999999999999998876542    26899999999999765

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04117 Rab15 Rab15 subfamily

Probab=99.96  E-value=5.5e-28  Score=159.89  Aligned_cols=120  Identities=35%  Similarity=0.687  Sum_probs=107.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      ++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999999988888888887777777788888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++++|+.+..|+..+.....    .+.|+++|+||+|+.++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~----~~~~iilvgnK~Dl~~~  120 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAP----EGVQKILIGNKADEEQK  120 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc
Confidence            99999999999999998876542    27899999999999865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04116 Rab9 Rab9 subfamily

Probab=99.96  E-value=1.6e-27  Score=158.74  Aligned_cols=127  Identities=56%  Similarity=1.048  Sum_probs=112.2

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      +...+||+++|++++|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            34679999999999999999999999988877777877777677777888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      ++|||++++++++.+..|...+..........+.|+++|+||+|+..
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  128 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE  128 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc
Confidence            99999999999999999999888766544445789999999999973

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01868 Rab11_like Rab11-like

Probab=99.96  E-value=6.6e-28  Score=159.87  Aligned_cols=122  Identities=39%  Similarity=0.767  Sum_probs=109.2

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      ..+||+++|+++||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            45899999999999999999999998887778888877777778888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||++++.++..+..|+..+......    +.|+++|+||+|+...
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~pi~vv~nK~Dl~~~  123 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADS----NIVIMLVGNKSDLRHL  123 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc
Confidence            99999999999999999988766532    6899999999999865

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.96  E-value=4.9e-28  Score=159.95  Aligned_cols=119  Identities=39%  Similarity=0.817  Sum_probs=105.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC--CeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +||+++|++++|||||++++.+..+...+.++.+.++....+.+.  +..+.+++|||||++.+...+..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            489999999999999999999988887778888877766666666  667899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||+++++++..+..|+..+.....     +.|+++|+||+|+..+
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~  121 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECG-----DIPMVLVQTKIDLLDQ  121 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhcccc
Confidence            9999999999999999988865443     7899999999999865

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.96  E-value=7.5e-28  Score=160.53  Aligned_cols=123  Identities=40%  Similarity=0.753  Sum_probs=107.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc-chhhhheecccEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADCCV   85 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~l   85 (156)
                      +.+||+++|++|+|||||++++.+..+...+.++.+.+.....+..++..+.+.+||++|++.+. .++..+++.+|+++
T Consensus         1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i   80 (170)
T cd04115           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (170)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence            35899999999999999999999988887778888777777777888888999999999998876 56788899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||.+++.+|..+..|+..+......   .++|+++|+||+|+.+.
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~  124 (170)
T cd04115          81 FVYDVTNMASFHSLPSWIEECEQHSLP---NEVPRILVGNKCDLREQ  124 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcCC---CCCCEEEEEECccchhh
Confidence            999999999999999999988766433   27899999999999865

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01864 Rab19 Rab19 subfamily

Probab=99.96  E-value=1.1e-27  Score=158.99  Aligned_cols=122  Identities=38%  Similarity=0.728  Sum_probs=107.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      ..+||+++|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+++||+||++.+..++..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999888877777787777777777788877899999999999999899999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||.+++.+|+.+..|+..+.....    .+.|+++|+||+|+.+.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~  123 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGA----SNVVLLLIGNKCDLEEQ  123 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEECcccccc
Confidence            9999999999999999998875432    37899999999999865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04136 Rap_like Rap-like subfamily

Probab=99.96  E-value=8.7e-28  Score=158.83  Aligned_cols=120  Identities=36%  Similarity=0.648  Sum_probs=104.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|+|||||++++....+...+.++.+ +.....+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            6999999999999999999998887776666665 344556677888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++.+|+.+..|...+......   .+.|+++|+||+|+.++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~  121 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDT---ENVPMVLVGNKCDLEDE  121 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc
Confidence            999999999999999888765432   37899999999999765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01875 RhoG RhoG subfamily

Probab=99.96  E-value=1.5e-27  Score=161.90  Aligned_cols=119  Identities=28%  Similarity=0.618  Sum_probs=104.3

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .+||+++|++++|||||+.+|....+...+.++.+..+ ...+.+++..+.+++|||+|++.+..++..+++.+|++++|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            48999999999999999999999998888888887554 44456788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           88 YDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        88 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||++++.+|+.+. .|...+....     .+.|+++||||+||.+.
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgNK~DL~~~  122 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHC-----PNVPILLVGTKKDLRND  122 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEeChhhhcC
Confidence            9999999999996 5877776543     27899999999999764

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>PTZ00369 Ras-like protein; Provisional

Probab=99.96  E-value=8.4e-28  Score=162.90  Aligned_cols=123  Identities=31%  Similarity=0.611  Sum_probs=107.0

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.+||+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            4468999999999999999999999888777777776544 455677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++++|+.+..|+..+.+....   .+.|+++|+||+|+.++
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~---~~~piiiv~nK~Dl~~~  125 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDK---DRVPMILVGNKCDLDSE  125 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc
Confidence            999999999999999999988765432   37899999999999765

>cd04110 Rab35 Rab35 subfamily

Probab=99.96  E-value=1.2e-27  Score=163.44  Aligned_cols=122  Identities=41%  Similarity=0.733  Sum_probs=108.4

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      +..++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            45799999999999999999999999887777888877776677777787789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++++|+.+..|+..+.....     ..|+++|+||+|+.+.
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~~~-----~~piivVgNK~Dl~~~  125 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQNCD-----DVCKVLVGNKNDDPER  125 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccc
Confidence            99999999999999999998876543     6899999999999865

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=3.4e-28  Score=160.77  Aligned_cols=128  Identities=45%  Similarity=0.805  Sum_probs=116.1

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d   89 (156)
                      ||+++|++++|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+......+++.+|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999998899998888888999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecccc
Q 031598           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEG  143 (156)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~  143 (156)
                      .+++++|+.+..|+..+.....    .+.|+++||||+|+.++  ++++.++..
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~----~~~~iivvg~K~D~~~~--~~v~~~~~~  128 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKP----EDIPIIVVGNKSDLSDE--REVSVEEAQ  128 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHST----TTSEEEEEEETTTGGGG--SSSCHHHHH
T ss_pred             cccccccccccccccccccccc----ccccceeeecccccccc--ccchhhHHH
Confidence            9999999999999999988876    26899999999999975  555555433

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04175 Rap1 Rap1 subgroup

Probab=99.96  E-value=1.3e-27  Score=158.44  Aligned_cols=120  Identities=32%  Similarity=0.645  Sum_probs=104.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|.+|+|||||++++....+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            6899999999999999999998877766667765443 455667788889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |.+++.+|+.+..|+..+.....   ..+.|+++|+||+|+.++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~  121 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKD---TEDVPMILVGNKCDLEDE  121 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECCcchhc
Confidence            99999999999999998876543   237899999999999875

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=7.7e-28  Score=151.22  Aligned_cols=131  Identities=37%  Similarity=0.717  Sum_probs=118.2

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ....|++++|.+.+|||||+.+..+..+......+.|.+...+.+.-...++.+++|||.|++.++.+...+++.+++++
T Consensus        19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi   98 (193)
T KOG0093|consen   19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   98 (193)
T ss_pred             cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence            45689999999999999999999999998888899999988887766778899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccc
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEE  142 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~  142 (156)
                      ++||..|.+||.++++|...+..+    ..++.|+|+|+||||+.++  |.++.|..
T Consensus        99 LmyDitNeeSf~svqdw~tqIkty----sw~naqvilvgnKCDmd~e--Rvis~e~g  149 (193)
T KOG0093|consen   99 LMYDITNEESFNSVQDWITQIKTY----SWDNAQVILVGNKCDMDSE--RVISHERG  149 (193)
T ss_pred             EEEecCCHHHHHHHHHHHHHheee----eccCceEEEEecccCCccc--eeeeHHHH
Confidence            999999999999999999998655    3459999999999999998  77666643

>cd04113 Rab4 Rab4 subfamily

Probab=99.96  E-value=1.2e-27  Score=158.01  Aligned_cols=120  Identities=41%  Similarity=0.737  Sum_probs=106.8

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++++|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999887777788777777777778888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |.+++.++..+..|+..+.....    ++.|+++|+||+|+.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~  120 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALAS----PNIVVILVGNKSDLADQ  120 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEEchhcchh
Confidence            99999999999999988765543    27899999999999864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04125 RabA_like RabA-like subfamily

Probab=99.96  E-value=1.8e-27  Score=161.12  Aligned_cols=120  Identities=47%  Similarity=0.781  Sum_probs=107.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            48999999999999999999999987777888887777777788888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |.+++.+|..+..|+..+......    +.|+++|+||+|+.+.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~----~~~~ivv~nK~Dl~~~  120 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARE----NVIKVIVANKSDLVNN  120 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECCCCccc
Confidence            999999999999999988765432    5799999999999865

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=3.3e-27  Score=163.28  Aligned_cols=122  Identities=30%  Similarity=0.630  Sum_probs=109.8

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ...+||+++|.+|+|||||++++....+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.++++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            56799999999999999999999999888888888888777777777777899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||.+++.+|+.+..|+..+.....     +.|+++||||+|+...
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~~-----~~piilvgNK~Dl~~~  132 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKNR  132 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEEchhhhhc
Confidence            99999999999999999999986542     7899999999999743

>cd04109 Rab28 Rab28 subfamily

Probab=99.96  E-value=1.6e-27  Score=164.47  Aligned_cols=123  Identities=37%  Similarity=0.612  Sum_probs=108.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC-eEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      +||+++|++++|||||+++|.+..+...+.++.+.+.....+.+++ ..+.+.+|||+|++.+...+..+++.+|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999998888889998888777777754 468999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||++++++|+.+..|+..+....... ..+.|+++|+||+|+.+.
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~-~~~~piilVgNK~DL~~~  124 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSS-ETQPLVVLVGNKTDLEHN  124 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcccc-CCCceEEEEEECcccccc
Confidence            99999999999999999988765421 235789999999999754

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PLN03110 Rab GTPase; Provisional

Probab=99.95  E-value=2.1e-27  Score=164.01  Aligned_cols=123  Identities=39%  Similarity=0.751  Sum_probs=110.8

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ...+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+++++
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i   89 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   89 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence            45689999999999999999999999887777888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||.+++.+|+.+..|+..+.....    .+.|+++|+||+|+...
T Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~----~~~piiiv~nK~Dl~~~  132 (216)
T PLN03110         90 LVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKSDLNHL  132 (216)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhCC----CCCeEEEEEEChhcccc
Confidence            99999999999999999998876543    27899999999999765

>cd01866 Rab2 Rab2 subfamily

Probab=99.95  E-value=2.5e-27  Score=157.72  Aligned_cols=122  Identities=39%  Similarity=0.755  Sum_probs=108.5

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      ..+||+++|.+++|||||++++.+..+...+.++.+.+.....+..++....+.+||++|++.+..+...+++.+|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            45899999999999999999999998877777777777777777788888899999999999999888999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||++++.+++.+..|+..+.....    ++.|+++|+||.|+.++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~pvivv~nK~Dl~~~  124 (168)
T cd01866          83 VYDITRRETFNHLTSWLEDARQHSN----SNMTIMLIGNKCDLESR  124 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccccc
Confidence            9999999999999999998876543    27899999999999854

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04111 Rab39 Rab39 subfamily

Probab=99.95  E-value=1.8e-27  Score=163.71  Aligned_cols=122  Identities=34%  Similarity=0.719  Sum_probs=107.0

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      .+||+++|++|+|||||+++|.+..+...+.++.+.+.....+.+ ++..+.+++|||+|++.+...+..+++.+|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999888777888877777766665 4566899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||.+++.+|+.+..|+..+......   ...|+++|+||+|+.++
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~---~~~~iilvgNK~Dl~~~  124 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQP---HRPVFILVGHKCDLESQ  124 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEEccccccc
Confidence            99999999999999999998766543   26789999999999875

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.95  E-value=5.1e-27  Score=157.25  Aligned_cols=118  Identities=31%  Similarity=0.604  Sum_probs=102.6

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+++|||+|++.+...+..+++.+|++++||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            79999999999999999999999988888888876553 34567788899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++++|+.+. .|...+....     ++.|+++|+||+|+.++
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~-----~~~piilvgnK~Dl~~~  120 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQIDLRDD  120 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECHhhhhC
Confidence            999999999986 5877776543     26899999999999764

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04124 RabL2 RabL2 subfamily

Probab=99.95  E-value=6.9e-27  Score=154.62  Aligned_cols=118  Identities=36%  Similarity=0.730  Sum_probs=103.8

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|.+|+|||||++++.+..+.+.+.++.+.+.......+++..+.+++|||+|++.+..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887776777666666666677888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      |.+++.++..+..|+..+.....     +.|+++|+||+|+..
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-----~~p~ivv~nK~Dl~~  118 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYRP-----EIPCIVVANKIDLDP  118 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEECccCch
Confidence            99999999999999988865432     689999999999953

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=7.1e-27  Score=167.01  Aligned_cols=128  Identities=27%  Similarity=0.517  Sum_probs=109.4

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC-------------eEEEEEEEeCCCccccc
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-------------RLFTLQIWDTAGQERFQ   71 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~g~~~~~   71 (156)
                      ....+||+++|+.|+|||||+++|.+..+...+.++.+.++....+.+++             ..+.++||||+|++.+.
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr   97 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK   97 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence            34469999999999999999999999988888888988877666666542             45789999999999999


Q ss_pred             chhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--------CCCCCCcEEEEEecCCCCCC
Q 031598           72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASP--------SDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        72 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .++..+++.++++|+|||++++.+|+.+..|+..+......        ....++|++|||||+||..+
T Consensus        98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~  166 (334)
T PLN00023         98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK  166 (334)
T ss_pred             hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence            99999999999999999999999999999999999876421        01125899999999999765

>cd04176 Rap2 Rap2 subgroup

Probab=99.95  E-value=2.9e-27  Score=156.53  Aligned_cols=120  Identities=31%  Similarity=0.626  Sum_probs=104.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|.+|+|||||++++....+.+.+.++.+ +.....+..++....+.+|||||++.+..++..+++.+|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            6899999999999999999999988777666654 344556677787889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++.+|.++..|+..+......   .+.|+++|+||+|+..+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~---~~~piviv~nK~Dl~~~  121 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGY---EKVPIILVGNKVDLESE  121 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccchhc
Confidence            999999999999999988765432   37899999999999754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.95  E-value=5.1e-27  Score=162.07  Aligned_cols=118  Identities=23%  Similarity=0.541  Sum_probs=103.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|+|||||+++|.+..+...+.|+.+..+ ...+.+++..+.+.+|||+|++.+...++.+++.+|++++||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            7999999999999999999999998888888887655 356677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++++|+.+. .|...+....     ++.|+++||||+|+.++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~-----~~~piiLVgnK~DL~~~  120 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC-----PNAKVVLVGCKLDMRTD  120 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEECcccccc
Confidence            999999999984 5666554433     27899999999999753

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.95  E-value=4.8e-27  Score=155.43  Aligned_cols=121  Identities=31%  Similarity=0.607  Sum_probs=103.7

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .+||+++|++++|||||++++.+..+...+.++.+.. ......+++..+.+++|||||++.+..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            4899999999999999999999888766666666533 344556778888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||++++.+|+.+..|+..+.+....   .+.|+++|+||+|+..+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piiiv~NK~Dl~~~  122 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDR---DEFPMILVGNKADLEHQ  122 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCC---CCCCEEEEeeCcccccc
Confidence            9999999999999999888765432   27899999999999865

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.95  E-value=3.7e-27  Score=155.90  Aligned_cols=120  Identities=48%  Similarity=0.874  Sum_probs=107.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999887777788887777777788888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |.+++.+++.+..|+..+..+..    .+.|+++|+||+|+...
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~----~~~pivvv~nK~D~~~~  120 (164)
T smart00175       81 DITNRESFENLKNWLKELREYAD----PNVVIMLVGNKSDLEDQ  120 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEEchhcccc
Confidence            99999999999889988876653    27899999999999764

Rab GTPases are implicated in vesicle trafficking.

>cd01862 Rab7 Rab7 subfamily

Probab=99.95  E-value=6.7e-27  Score=155.84  Aligned_cols=124  Identities=85%  Similarity=1.356  Sum_probs=110.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|+++||||||++++.+..+.....++.+.++....+.+++..+.+++||+||++.+...+..+++.+|+++++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            48999999999999999999999887777777777777777778888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++.+++.+..|...+...+......+.|+++|+||+|+..+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  124 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK  124 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc
Confidence            99999999999899988877766555568999999999999853

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04128 Spg1 Spg1p

Probab=99.95  E-value=7.6e-27  Score=157.30  Aligned_cols=118  Identities=28%  Similarity=0.566  Sum_probs=105.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999988888899888877777888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      |++++.+|+.+..|+..+.....    ...| ++|+||+|+..
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~----~~~p-ilVgnK~Dl~~  118 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNK----TAIP-ILVGTKYDLFA  118 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC----CCCE-EEEEEchhccc
Confidence            99999999999999998876532    1456 68899999964

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.95  E-value=5.3e-27  Score=155.33  Aligned_cols=120  Identities=33%  Similarity=0.653  Sum_probs=102.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|+|||||++++.+..+...+.++.. +........++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999999887766666654 333455566777889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++++++.+..|+..+.+.....   +.|+++|+||+|+.++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~---~~pii~v~nK~Dl~~~  120 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRD---DVPIVLVGNKCDLESE  120 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc
Confidence            9999999999999998887664432   6899999999999865

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04118 Rab24 Rab24 subfamily

Probab=99.95  E-value=9.6e-27  Score=158.08  Aligned_cols=119  Identities=37%  Similarity=0.709  Sum_probs=104.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      +||+++|.+++|||||+++|.+..+.. .+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            489999999999999999999988764 5677777777677788888889999999999999998988999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||++++.+++.+..|+..+....     .+.|+++|+||+|+.+.
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~  120 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-----EHCKIYLCGTKSDLIEQ  120 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-----CCCCEEEEEEccccccc
Confidence            99999999999988998876532     26899999999999654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04112 Rab26 Rab26 subfamily

Probab=99.95  E-value=5.2e-27  Score=159.27  Aligned_cols=120  Identities=45%  Similarity=0.769  Sum_probs=104.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      +||+++|++++|||||++++.+..+.. .+.++.+.+.....+.+++..+.++||||||++.+...+..+++.+|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999888753 4566666666666677888889999999999999988888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||++++.+++.+..|+..+......    +.|+++|+||+|+..+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~NK~Dl~~~  121 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQE----DVVIMLLGNKADMSGE  121 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEEcccchhc
Confidence            9999999999999999988776432    6899999999999754

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.2e-27  Score=149.69  Aligned_cols=130  Identities=40%  Similarity=0.679  Sum_probs=119.3

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      -+-.+||+++|..|+|||.|+++|...-+++....+.+.+...+.+.++++.++++||||.|++.++++...++++++++
T Consensus         4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal   83 (213)
T KOG0095|consen    4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (213)
T ss_pred             cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  140 (156)
                      ++|||++...+|+.+.+|+.++..+...    +.--|+||||.|+.+.  ++++..
T Consensus        84 ilvydiscqpsfdclpewlreie~yan~----kvlkilvgnk~d~~dr--revp~q  133 (213)
T KOG0095|consen   84 ILVYDISCQPSFDCLPEWLREIEQYANN----KVLKILVGNKIDLADR--REVPQQ  133 (213)
T ss_pred             EEEEecccCcchhhhHHHHHHHHHHhhc----ceEEEeeccccchhhh--hhhhHH
Confidence            9999999999999999999999988864    4445899999999987  555543

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.95  E-value=1.8e-26  Score=153.34  Aligned_cols=119  Identities=31%  Similarity=0.729  Sum_probs=105.6

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|||||||++++....+...+.++.+.+.....+..++..+.+.+|||+|++.+...+..++..+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            48999999999999999999988877777888777766666666778899999999999999888889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |.+++.+++.+..|+..+.....     +.|+++|+||+|+.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-----~~piiiv~nK~Dl~~~  119 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-----NIPIVLCGNKVDIKDR  119 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEEchhcccc
Confidence            99999999999999999887654     7899999999999843

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01861 Rab6 Rab6 subfamily

Probab=99.95  E-value=1.2e-26  Score=153.13  Aligned_cols=120  Identities=43%  Similarity=0.775  Sum_probs=106.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++++|||||++++.+.++...+.++.+.++....+..++..+.+++|||||+..+..++..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999988777888888888888888887789999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |.+++.+|..+..|+..+......    +.|+++|+||+|+..+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilv~nK~D~~~~  120 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGN----DVIIVLVGNKTDLSDK  120 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCC----CCEEEEEEEChhcccc
Confidence            999999999999999987654321    6899999999999644

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.95  E-value=8.4e-27  Score=157.62  Aligned_cols=118  Identities=31%  Similarity=0.594  Sum_probs=99.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++.. .+... +..+.+.+|||+|++.+...+..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            489999999999999999999999887777777665533 34444 6678999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           88 YDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        88 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||++++.+|+.+. .|+..+....     .+.|+++|+||+|+..+
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~  120 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-----PGTPIMLVGLKTDLRKD  120 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeChhhhhC
Confidence            9999999999986 4777665432     27899999999999764

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.95  E-value=2e-26  Score=154.24  Aligned_cols=118  Identities=30%  Similarity=0.587  Sum_probs=101.6

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|+|||||+.++....+...+.++.+. .....+.+++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            68999999999999999999998888777777753 33445667888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++++|..+. .|+..+....     ++.|+++|+||+|+.+.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-----~~~piilvgnK~Dl~~~  120 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDD  120 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEeeChhhccC
Confidence            999999999985 5877776542     27899999999999754

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>PLN03108 Rab family protein; Provisional

Probab=99.95  E-value=1.4e-26  Score=159.24  Aligned_cols=128  Identities=39%  Similarity=0.724  Sum_probs=110.8

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      ..+||+++|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl   84 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            46999999999999999999999988877777888877777778888888899999999999999889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  140 (156)
                      |||++++.+|+.+..|+..+.....    .+.|+++|+||+|+.+.  +..+.+
T Consensus        85 v~D~~~~~s~~~l~~~~~~~~~~~~----~~~piiiv~nK~Dl~~~--~~~~~~  132 (210)
T PLN03108         85 VYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHR--RAVSTE  132 (210)
T ss_pred             EEECCcHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccCccc--cCCCHH
Confidence            9999999999999999888765432    27899999999999875  444443

>cd01892 Miro2 Miro2 subfamily

Probab=99.95  E-value=1.7e-26  Score=153.97  Aligned_cols=121  Identities=25%  Similarity=0.412  Sum_probs=105.0

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ++.+||+++|.+|+|||||+++|.+..+. ..+.++.+..+....+.+++....+.+||++|++.+..++..+++.+|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            56899999999999999999999999887 77788887777666677788778899999999999998999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||.+++.+++.+..|+..+..      ..++|+++|+||+|+.+.
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~------~~~~p~iiv~NK~Dl~~~  123 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFM------LGEIPCLFVAAKADLDEQ  123 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhcc------CCCCeEEEEEEccccccc
Confidence            999999999999988888775521      126899999999999754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04140 ARHI_like ARHI subfamily

Probab=99.95  E-value=2.9e-26  Score=152.12  Aligned_cols=128  Identities=28%  Similarity=0.464  Sum_probs=105.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|+|||||++++.+..+...+.++.+..+ ......+...+.+.+|||+|++.+..++..+++.++++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            6899999999999999999999988776667665433 444555677789999999999999988888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  140 (156)
                      |++++.+++.+..|+..+...... ...+.|+++|+||+|+.+.  +++..+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~--~~v~~~  129 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGN-NIEKIPIMLVGNKCDESHK--REVSSN  129 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcC-CCCCCCEEEEEECcccccc--CeecHH
Confidence            999999999999998877765432 2347899999999999764  444433

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04144 Ras2 Ras2 subfamily

Probab=99.95  E-value=7.7e-27  Score=158.30  Aligned_cols=121  Identities=31%  Similarity=0.557  Sum_probs=102.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d   89 (156)
                      ||+++|.+|+|||||+++|.+..+...+.++.+..+ .....+++..+.+.+|||+|++.+...+..+++.+|++++|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999998888777777765443 3445567777889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++.+|+.+..|+..+...... ...+.|+++|+||+|+.++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilvgNK~Dl~~~  121 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDE-SAADVPIMIVGNKCDKVYE  121 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcc-cCCCCCEEEEEEChhcccc
Confidence            99999999999999988765431 2237899999999999765

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.95  E-value=3.9e-26  Score=150.52  Aligned_cols=120  Identities=32%  Similarity=0.615  Sum_probs=103.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.++++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            6899999999999999999999888777777765443 455667777788999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |.+++.+|..+..|+..+.+....   .+.|+++|+||+|+.+.
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~---~~~piivv~nK~Dl~~~  121 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDS---DDVPMVLVGNKCDLAAR  121 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc
Confidence            999999999999999888766432   27899999999999763

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.95  E-value=2.3e-26  Score=152.08  Aligned_cols=120  Identities=43%  Similarity=0.808  Sum_probs=107.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++++|||||++++.+.++.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   81 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence            79999999999999999999999887767778777777777888888899999999999999888889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |.++++++.....|+..+.....    .+.|+++|+||+|+.+.
T Consensus        82 d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~  121 (163)
T cd01860          82 DITSEESFEKAKSWVKELQRNAS----PNIIIALVGNKADLESK  121 (163)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc
Confidence            99999999999999998876543    37899999999999854

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01863 Rab18 Rab18 subfamily

Probab=99.95  E-value=4e-26  Score=150.68  Aligned_cols=121  Identities=41%  Similarity=0.779  Sum_probs=106.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++++|||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998877667778777777676777777889999999999999888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |.+++.+++.+..|+..+..+....   +.|+++|+||+|+...
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~---~~~~~iv~nK~D~~~~  121 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNN---DIVKMLVGNKIDKENR  121 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCC---CCcEEEEEECCccccc
Confidence            9999999999988998887765433   7899999999999843

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.94  E-value=2.8e-26  Score=151.89  Aligned_cols=119  Identities=33%  Similarity=0.644  Sum_probs=102.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC--CCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      +||+++|++|||||||++++...  .+...+.++.+.++.......+ +..+.+.+|||||++.+..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999864  5677778888777766666554 56689999999999999988999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||.++++++..+..|+..+....     .+.|+++|+||+|+.++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~  122 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-----KHMPGVLVGNKMDLADK  122 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccc
Confidence            9999999999999999998887653     26899999999999765

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04134 Rho3 Rho3 subfamily

Probab=99.94  E-value=5.1e-26  Score=154.18  Aligned_cols=118  Identities=31%  Similarity=0.565  Sum_probs=101.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      .||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+++|||+|++.+..++..+++.+|++++||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            4899999999999999999999988877777776554 344556777789999999999999888889999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++.+|+.+. .|+..+.....     +.|+++|+||+|+.+.
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~~-----~~piilvgNK~Dl~~~  119 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHCP-----GVKLVLVALKCDLREA  119 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccC
Confidence            999999999986 58888765432     7899999999999865

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.94  E-value=2.8e-26  Score=160.94  Aligned_cols=123  Identities=30%  Similarity=0.542  Sum_probs=104.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|+|||||+++|.+..+...+.++.+ +.....+.+++..+.++||||+|++.+..+...++..+|++++||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999888877777765 445566777888899999999999998888888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-----CCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQAS-----PSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++++|+.+..|++.+.....     .....+.|+++|+||+|+..+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~  128 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP  128 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc
Confidence            99999999999999988875421     112337899999999999864

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04142 RRP22 RRP22 subfamily

Probab=99.94  E-value=5.6e-26  Score=154.86  Aligned_cols=123  Identities=28%  Similarity=0.496  Sum_probs=99.6

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------hhhhheec
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRG   80 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~   80 (156)
                      +||+++|.+++|||||+++|.+.++...+.++.+.+.....+.+++..+.+++|||||...+..        .....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999988877777776665555666788888999999999654321        12344788


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|++++|||++++++|+.+..|++.+..... ....++|+++|+||+|+..+
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~-~~~~~~piiivgNK~Dl~~~  131 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRP-AGNKEPPIVVVGNKRDQQRH  131 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcc-cCCCCCCEEEEEECcccccc
Confidence            9999999999999999999999988876642 11237899999999999765

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04123 Rab21 Rab21 subfamily

Probab=99.94  E-value=6.8e-26  Score=149.40  Aligned_cols=120  Identities=42%  Similarity=0.776  Sum_probs=103.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|+|||||+++|.+..+.....++...+.........+....+.+||+||+..+...+..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999998877666666656666666666777789999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++++++.+..|++.+......    +.|+++|+||+|+.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~nK~D~~~~  120 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGN----NISLVIVGNKIDLERQ  120 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc
Confidence            999999999999999888766542    6899999999999864

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.94  E-value=8e-26  Score=154.12  Aligned_cols=113  Identities=31%  Similarity=0.693  Sum_probs=103.4

Q ss_pred             EcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCCh
Q 031598           14 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM   93 (156)
Q Consensus        14 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~   93 (156)
                      +|.++||||||++++....+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.++++++|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999998888878888988888777788888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           94 KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      .+|..+..|+..+.+...     ++|+++||||+|+..
T Consensus        81 ~S~~~i~~w~~~i~~~~~-----~~piilvgNK~Dl~~  113 (200)
T smart00176       81 VTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDVKD  113 (200)
T ss_pred             HHHHHHHHHHHHHHHhCC-----CCCEEEEEECccccc
Confidence            999999999999987642     789999999999964

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.94  E-value=3.4e-27  Score=150.80  Aligned_cols=142  Identities=33%  Similarity=0.652  Sum_probs=123.6

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ...++++++|++-+|||+|+++|...+++.-.+|+.+.+.+...+.. ++..+++++|||.|++.++++...++++.-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            45789999999999999999999999999999999999988877665 56678999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhccc
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKY  153 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~  153 (156)
                      ++|||.+|++||+.+..|.++-..+..  ++.++-+++||+|+||..+  |++..||.+.  ....+++
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q--~P~k~VFlLVGhKsDL~Sq--RqVt~EEaEk--lAa~hgM  148 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQ--GPDKVVFLLVGHKSDLQSQ--RQVTAEEAEK--LAASHGM  148 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcC--CCCeeEEEEeccccchhhh--ccccHHHHHH--HHHhcCc
Confidence            999999999999999999998776654  3335557899999999988  9999988766  4444444

>cd04114 Rab30 Rab30 subfamily

Probab=99.94  E-value=2.1e-25  Score=148.29  Aligned_cols=123  Identities=39%  Similarity=0.705  Sum_probs=107.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ...++|+++|++|+|||||++++.+..+...+.++.+.+.....+.+.+..+.+.+||+||+..+...+..+++.+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999988877777777777777777788888889999999999999988899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||.+++.++..+..|+..+......    +.|+++|+||+|+.++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~----~~~~i~v~NK~D~~~~  127 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQYANN----KVITILVGNKIDLAER  127 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc
Confidence            999999999999999998887655432    6899999999999765

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03118 Rab family protein; Provisional

Probab=99.94  E-value=1.3e-25  Score=154.60  Aligned_cols=125  Identities=36%  Similarity=0.698  Sum_probs=103.4

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      ..+..+||+++|.+|+|||||+++|.+..+. .+.++.+.+.....+..++..+.+.+|||||++.+..++..+++.+|+
T Consensus        10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~   88 (211)
T PLN03118         10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG   88 (211)
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            3445689999999999999999999988764 456777777767777778888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||.+++++|..+.. |...+.....   ..+.|+++|+||+|+..+
T Consensus        89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~---~~~~~~ilv~NK~Dl~~~  135 (211)
T PLN03118         89 IILVYDVTRRETFTNLSDVWGKEVELYST---NQDCVKMLVGNKVDRESE  135 (211)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc
Confidence            999999999999999876 4444433222   226799999999999865

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.94  E-value=2.6e-26  Score=152.35  Aligned_cols=114  Identities=20%  Similarity=0.353  Sum_probs=96.2

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d   89 (156)
                      .|+++|++|+|||||+++|.+..+...+.++.+...    ..++...+.+.+||++|++.+..++..+++.+|++++|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            379999999999999999998877777777766542    2233445889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+++.++.....|+..+....     .++|+++|+||+|+...
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-----~~~piilv~NK~Dl~~~  114 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-----PDLPLVVLANKQDLPAA  114 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-----CCCcEEEEEeCcCCcCC
Confidence            999999998888877775332     37899999999999865

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd00154 Rab Rab family

Probab=99.94  E-value=1.6e-25  Score=146.67  Aligned_cols=120  Identities=48%  Similarity=0.929  Sum_probs=107.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++++|||||++++.+..+...+.++.+.++.......++....+.+||+||+..+...+..+++.+|++++||
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            48999999999999999999999988877788888888888888788889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |.++++++..+..|+..+.....    .+.|+++|+||+|+..+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~  120 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAP----ENIPIILVGNKIDLEDQ  120 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEEccccccc
Confidence            99999999999999988876653    27899999999999733

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04177 RSR1 RSR1 subgroup

Probab=99.94  E-value=2.3e-25  Score=148.24  Aligned_cols=120  Identities=36%  Similarity=0.634  Sum_probs=104.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|+|||||++++.+..+...+.++.+.. ....+..++..+.+.+|||||++.+..++..+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            689999999999999999999888877777776544 3556667788889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |.+++++++.+..|...+.+....   .++|+++|+||+|+...
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~---~~~piiiv~nK~D~~~~  121 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDS---DNVPMVLVGNKADLEDD  121 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC---CCCCEEEEEEChhcccc
Confidence            999999999999998888765332   37899999999999765

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04126 Rab20 Rab20 subfamily

Probab=99.94  E-value=1.2e-25  Score=155.12  Aligned_cols=114  Identities=39%  Similarity=0.743  Sum_probs=96.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|.+++|||||+++|.+.++.. ..++.+.++.....    ..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998764 45666555433322    4578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      |++++.+|+.+..|+..+.....    .+.|+++|+||+|+.+
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~----~~~piIlVgNK~DL~~  114 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTAN----EDCLFAVVGNKLDLTE  114 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccccc
Confidence            99999999999888887765422    3689999999999976

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.94  E-value=2.5e-25  Score=148.69  Aligned_cols=116  Identities=30%  Similarity=0.625  Sum_probs=99.5

Q ss_pred             EEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEEC
Q 031598           11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV   90 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~   90 (156)
                      |+++|++|+|||||++++.+..+...+.++.... ....+..++..+.+.+|||||++.+..++..+++.+|++++|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            5899999999999999999998877777776544 344566788888999999999999999999999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           91 NSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        91 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++++|+.+. .|+..+.....     +.|+++|+||+|+..+
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~  117 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCP-----NTPIILVGTKLDLRED  117 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEecChhhhhC
Confidence            9999999985 58887765432     7899999999999764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.94  E-value=3.5e-25  Score=148.02  Aligned_cols=118  Identities=31%  Similarity=0.551  Sum_probs=100.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|+|||||+.++.+..+...+.++. .+.....+..++....+.+|||||++.+...+..+++.+|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999888877777665 3444556677787889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |.+++.+|+.+. .|+..+....     .+.|+++|+||+|+...
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~  119 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-----PKAPIILVGTQADLRTD  119 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEeeChhhccC
Confidence            999999999984 6877776432     26899999999999753

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.94  E-value=7.6e-26  Score=150.06  Aligned_cols=120  Identities=29%  Similarity=0.490  Sum_probs=96.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc-ccchhhhheecccEEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~l~v~   88 (156)
                      ||+++|++|+|||||++++.+..+...+.++....+ .....+++..+.+.+||+||+.. .......+++.+|++++||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            589999999999999999998877665556554333 44556778788999999999885 3455677889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++.+|+.+..|+..+.....  ...++|+++|+||+|+..+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~  121 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKK--RDREIPVILVGNKADLLHY  121 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECCchHHh
Confidence            99999999999999888776532  1227899999999999755

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04148 RGK RGK subfamily

Probab=99.93  E-value=3.2e-25  Score=153.55  Aligned_cols=125  Identities=27%  Similarity=0.427  Sum_probs=99.6

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhhee-cccEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR-GADCCVL   86 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~l~   86 (156)
                      +||+++|++|+|||||+++|.+..+. ..+.++.+.+.....+.+++....+.+|||+|++  ......++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            48999999999999999999877765 5555555445666677778888899999999988  233345566 8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  140 (156)
                      |||++++.+|+.+..|+..+.....   ..+.|+++|+||+|+...  +++..+
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~---~~~~piilV~NK~Dl~~~--~~v~~~  127 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQ---LEDRPIILVGNKSDLARS--REVSVQ  127 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEChhcccc--ceecHH
Confidence            9999999999999999888876532   237899999999999765  444443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.93  E-value=4.2e-25  Score=145.69  Aligned_cols=122  Identities=22%  Similarity=0.377  Sum_probs=96.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|+|||||+.++....+...+.++. ..+ ...+.+++..+.+.+|||+|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            489999999999999999999887766554443 223 45677788888999999999864     24567899999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  140 (156)
                      |++++.+|+.+..|+..+......   .+.|+++||||+|+...+.+++..+
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~---~~~piilvgnK~Dl~~~~~~~v~~~  122 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNI---SEIPLILVGTQDAISESNPRVIDDA  122 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEeeHHHhhhcCCcccCHH
Confidence            999999999999999988765432   3789999999999965433544443

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.93  E-value=3.6e-25  Score=147.27  Aligned_cols=115  Identities=22%  Similarity=0.399  Sum_probs=95.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d   89 (156)
                      +|+++|+++||||||+++|.+. +...+.++.+..  ...+...  .+.+++||+||+..+..++..+++.+|++++|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999976 555667776654  3344444  4789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++.++..+..|+..+.....   ..+.|+++|+||+|+.+.
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~---~~~~piliv~NK~Dl~~~  115 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPR---VSGKPILVLANKQDKKNA  115 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCcc---ccCCcEEEEEeCCCCcCC
Confidence            9999999999888888764422   237899999999999876

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04135 Tc10 TC10 subfamily

Probab=99.93  E-value=1.6e-24  Score=144.76  Aligned_cols=118  Identities=31%  Similarity=0.578  Sum_probs=99.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|+|||||++++.+..+...+.++... .....+.+++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            58999999999999999999999887766666643 33445667888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |..++.+|+.+. .|...+...     .++.|+++|+||+|+.+.
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-----~~~~piivv~nK~Dl~~~  119 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-----APNVPYLLVGTQIDLRDD  119 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeEchhhhcC
Confidence            999999999985 576666543     237899999999999754

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.93  E-value=3.7e-25  Score=149.95  Aligned_cols=132  Identities=34%  Similarity=0.583  Sum_probs=118.1

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +.+|++++|.+|+|||+|..+|.+..+...+.|+.. +.+...+.++++.+.+.|+||.|++++..+...+++.++++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            468999999999999999999999999999999986 6668888889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccc
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGS  144 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~  144 (156)
                      ||+++++.||+.+..+++.+.+....   ...|+++||||+|+...  ++++.+|...
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~---~~~PivlVGNK~Dl~~~--R~V~~eeg~~  133 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGR---DDVPIILVGNKCDLERE--RQVSEEEGKA  133 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCc---CCCCEEEEEEcccchhc--cccCHHHHHH
Confidence            99999999999999999999544333   36899999999999988  7888876444

>cd00876 Ras Ras family

Probab=99.93  E-value=1.1e-24  Score=143.34  Aligned_cols=119  Identities=35%  Similarity=0.671  Sum_probs=102.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d   89 (156)
                      ||+++|++|+|||||++++.+..+.....++.. +........++..+.+++||+||+..+......+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998877666666665 4455566677777899999999999998889999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .++++++..+..|+..+......   ...|+++|+||+|+...
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~  119 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDD---EDIPIVLVGNKCDLENE  119 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECCccccc
Confidence            99999999999998888776543   27899999999999874

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04149 Arf6 Arf6 subfamily

Probab=99.93  E-value=8.3e-25  Score=145.66  Aligned_cols=118  Identities=19%  Similarity=0.374  Sum_probs=94.1

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.+||+++|++++|||||++++....+. .+.++.+.+..  ....  ..+.+++|||+|++.+...+..+++.+|+++
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii   81 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   81 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34689999999999999999999876654 34556555442  2333  3478999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      +|||++++.++.++..|+..+....   ...+.|+++|+||+|+.+
T Consensus        82 ~v~D~t~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~  124 (168)
T cd04149          82 FVVDSADRDRIDEARQELHRIINDR---EMRDALLLVFANKQDLPD  124 (168)
T ss_pred             EEEeCCchhhHHHHHHHHHHHhcCH---hhcCCcEEEEEECcCCcc
Confidence            9999999999988877776665321   122689999999999975

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.93  E-value=1.1e-24  Score=145.99  Aligned_cols=118  Identities=19%  Similarity=0.372  Sum_probs=95.5

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      ..+||+++|++++|||||++++....+. .+.++.+.+..  .....  ...+.+|||||++.+..++..+++.+|++++
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            4689999999999999999999876654 34566655443  23333  3789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||++++.++++...|+..+....   ...+.|+++|+||+|+.+.
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~~  129 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNED---ELRDAVILVFANKQDLPDA  129 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCH---hhcCCcEEEEEeCcCcccC
Confidence            999999999998888777765322   1236899999999999754

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.93  E-value=1e-24  Score=148.32  Aligned_cols=117  Identities=26%  Similarity=0.404  Sum_probs=89.9

Q ss_pred             eEEEEEEcCCCCChhHHHH-HHhcCC-----CCCCCCCceee-EEEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 031598            8 LLKVIILGDSGVGKTSLMN-QYVNKK-----FSNQYKATIGA-DFLTKE--------VQFEDRLFTLQIWDTAGQERFQS   72 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~   72 (156)
                      .+||+++|++++|||||+. ++.+..     +...+.|+.+. +.+...        ..+++..+.+++|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999996 555443     33455666642 222211        24577889999999999875  3


Q ss_pred             hhhhheecccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           73 LGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        73 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      +...+++.+|++++|||++++.+|+.+. .|...+.....     +.|+++||||+||.+
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-----~~piilvgNK~DL~~  134 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-----RVPVILVGCKLDLRY  134 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhccc
Confidence            4556889999999999999999999996 58888765542     679999999999975

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.93  E-value=3.1e-24  Score=143.47  Aligned_cols=118  Identities=28%  Similarity=0.602  Sum_probs=99.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      .||+++|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||+|++.+...+...++.+|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999999999999988777777765444 345567778889999999999999888888899999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++++|+.+. .|...+.....     +.|+++|+||+|+.+.
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~  120 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVGNKKDLRND  120 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEeeChhcccC
Confidence            999999998885 57776655432     7899999999999754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.93  E-value=1.8e-24  Score=142.86  Aligned_cols=116  Identities=18%  Similarity=0.396  Sum_probs=93.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|.++||||||++++....+. .+.++.+.+..  .+.+.  .+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            48999999999999999999877665 35666655432  23333  478999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |.+++.++.....++..+....   ...+.|+++|+||+|+.+.
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~  116 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNED---ELRDAVLLVFANKQDLPNA  116 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcH---HhcCCCEEEEEECCCCCCC
Confidence            9999999998887776665321   1226799999999999754

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.93  E-value=1.9e-24  Score=142.83  Aligned_cols=120  Identities=33%  Similarity=0.596  Sum_probs=102.6

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|+|||||++++....+...+.++.... .......++..+.+.+||+||+..+...+..+++.++++++||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            489999999999999999999888776666665433 3445567778889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |.+++.++..+..|+..+.....   ..+.|+++|+||+|+...
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~---~~~~piiiv~NK~D~~~~  120 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKD---DDNVPLLLVGNKCDLEDK  120 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEccccccc
Confidence            99999999999999998887644   227899999999999863

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.93  E-value=2.2e-24  Score=145.43  Aligned_cols=120  Identities=24%  Similarity=0.392  Sum_probs=97.0

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      .+||+++|.+|||||||++++....+... .++.+.+.....+.. ++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            47999999999999999999998776543 455554444433333 3356889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      |||++++.+++....|+..+.......   +.|+++|+||+|+.+
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~---~~p~iiv~NK~D~~~  123 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQ---GVPVLVLANKQDLPN  123 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcC---CCcEEEEEECcCccc
Confidence            999999999988888887776544322   689999999999974

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.93  E-value=2.2e-24  Score=145.25  Aligned_cols=119  Identities=18%  Similarity=0.369  Sum_probs=95.4

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ...+||+++|+++||||||++++....+. .+.++.+.+..  .+...  .+.+++||+||++.+..++..+++.+|+++
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34589999999999999999999877665 34666665432  33333  478999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||+++++++..+..++..+..   .....+.|+++|+||+|+++.
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~---~~~~~~~piilv~NK~Dl~~~  133 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLN---EDELRDAVLLVFANKQDLPNA  133 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhc---CHhhCCCCEEEEEECCCCCCC
Confidence            99999999999887766665542   222237899999999999864

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.93  E-value=1.8e-24  Score=147.56  Aligned_cols=119  Identities=31%  Similarity=0.539  Sum_probs=101.3

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d   89 (156)
                      ||+++|.+|+|||||+++|.+..+...+.++.. ......+.+.+..+.+++||+||+..+..++..++..+|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999887766666553 3344556677777899999999999998888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++.+++.+..|+..+.......   ++|+++|+||+|+...
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~NK~Dl~~~  119 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDK---FVPIVVVGNKADSLEE  119 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEEccccccc
Confidence            999999999999988887765432   7899999999999753

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.92  E-value=3.6e-24  Score=143.90  Aligned_cols=120  Identities=33%  Similarity=0.542  Sum_probs=101.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      .||+++|.+|+|||||++++.+..+.....++..... ......++..+.+.+||+||+..+...+..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999998887665566554332 455566777788999999999999989999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |.++..+++.+..|+..+.+.....   +.|+++|+||+|+...
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~---~~p~ilv~NK~Dl~~~  121 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKE---SVPIVLVGNKSDLHTQ  121 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEEchhhhhc
Confidence            9999999999999988887764332   6799999999999764

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.92  E-value=3.8e-24  Score=134.69  Aligned_cols=114  Identities=33%  Similarity=0.552  Sum_probs=86.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCC--CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      ||+|+|++|+|||||+++|.+....  ..+....+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999988765  12233333444444555667767799999999998888888889999999999


Q ss_pred             EECCChhhHHHHHHH---HHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598           88 YDVNSMKSFDNLNNW---REEFLIQASPSDPDNFPFVVLGNKID  128 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~ilv~nK~D  128 (156)
                      ||.+++.+++.+..+   +..+.....     ++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-----~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDK-----NIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSS-----CSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCC-----CCCEEEEEeccC
Confidence            999999999997554   444443322     689999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.92  E-value=1.3e-23  Score=145.10  Aligned_cols=124  Identities=31%  Similarity=0.656  Sum_probs=108.8

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      .....+|++++|++|||||||++++....+...+.++.+.++....+..++..+.+.+|||+|++.+...+..++..+++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            34456999999999999999999988888877888888887777777778888999999999999998888899999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||.++..+|..+..|+..+.....     +.|+++|+||+|+.+.
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~i~lv~nK~Dl~~~  128 (215)
T PTZ00132         85 AIIMFDVTSRITYKNVPNWHRDIVRVCE-----NIPIVLVGNKVDVKDR  128 (215)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECccCccc
Confidence            9999999999999999999998876542     7899999999999653

>cd00157 Rho Rho (Ras homology) family

Probab=99.92  E-value=9.1e-24  Score=140.56  Aligned_cols=119  Identities=33%  Similarity=0.647  Sum_probs=97.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|+|||||+++|.+..+...+.++.. +........++..+.+++||+||++.+.......++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999987655555553 334455566788889999999999988888888889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      |++++.+|.... .|+..+.....     +.|+++|+||+|+.+..
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ivv~nK~Dl~~~~  120 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCP-----NVPIILVGTKIDLRDDE  120 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEEccHHhhhch
Confidence            999999988864 46666654432     78999999999998763

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01893 Miro1 Miro1 subfamily

Probab=99.92  E-value=7.2e-24  Score=140.81  Aligned_cols=117  Identities=24%  Similarity=0.447  Sum_probs=93.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|.+++|||||+++|.+..+...+..+. .. ......+.+..+.+.+|||||+..+...+..+++.+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            389999999999999999999988765433322 11 2233345667789999999999888777788889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++.+++.+. .|...+.....     +.|+++|+||+|+.+.
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~-----~~pviiv~nK~Dl~~~  118 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGV-----KVPIILVGNKSDLRDG  118 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhcccc
Confidence            999999999975 57676654432     7899999999999875

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04154 Arl2 Arl2 subfamily

Probab=99.92  E-value=6.4e-24  Score=141.93  Aligned_cols=120  Identities=23%  Similarity=0.486  Sum_probs=95.8

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      +...++|+++|++++|||||++++.+..+. ...++.+..  ...+.+++  +.+.+|||||++.+..++..+++.+|++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ--IKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            345689999999999999999999987543 345555432  33344443  7899999999998888899999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.++.....|+..+....   ...+.|+++|+||+|+.++
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~  130 (173)
T cd04154          86 IWVVDSSDRLRLDDCKRELKELLQEE---RLAGATLLILANKQDLPGA  130 (173)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECcccccC
Confidence            99999999999998888877775422   1237899999999999764

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04158 ARD1 ARD1 subfamily

Probab=99.92  E-value=6.9e-24  Score=141.33  Aligned_cols=115  Identities=23%  Similarity=0.445  Sum_probs=93.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d   89 (156)
                      ||+++|.++||||||++++.+..+.. +.++.+....  .+.+.  .+.+++|||||+..+...+..+++.+|++++|||
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999886543 5566554442  33343  4789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+++.++..+..|+..+.+...   ..+.|+++|+||+|+.+.
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~  115 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKE---LRDALLLIFANKQDVAGA  115 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChh---hCCCCEEEEEeCcCcccC
Confidence            9999999999888887764322   225799999999999743

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.92  E-value=1.8e-25  Score=142.33  Aligned_cols=135  Identities=39%  Similarity=0.678  Sum_probs=119.4

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      +.-.+|++++|..=+|||||+-++..+++......+....+..+.+.+.+....++||||.|++.|...-+.+++..+++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            44568999999999999999999999988877666766667777788888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccch
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSS  145 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~  145 (156)
                      ++|||+.+++||+.+..|..+++..+..    .+.+++||||+||.++  +++...|.+..
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlGn----ei~l~IVGNKiDLEee--R~Vt~qeAe~Y  144 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLGN----EIELLIVGNKIDLEEE--RQVTRQEAEAY  144 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhCC----eeEEEEecCcccHHHh--hhhhHHHHHHH
Confidence            9999999999999999999999887764    5778999999999988  88877766553

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.92  E-value=8.3e-24  Score=142.53  Aligned_cols=118  Identities=19%  Similarity=0.407  Sum_probs=94.0

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      ..+||+++|++++|||||++++....+.. +.++.+.+..  .+..  ..+.+++|||+|++.+...+..+++.+|++++
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            35899999999999999999998776653 4566654432  3333  34789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||++++.++.....++..+...   ....+.|+++|+||.|+.+.
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~---~~~~~~piilv~NK~Dl~~~  133 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSE---DELRDAVLLVFANKQDLPNA  133 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhC---HhhcCCCEEEEEeCCCCCCC
Confidence            99999999998887666665432   12236799999999999754

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.91  E-value=1.7e-24  Score=144.46  Aligned_cols=121  Identities=31%  Similarity=0.597  Sum_probs=110.2

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ...+|++++|++++|||+|+..+....++..+.|+.- +.+...+.++ +..+.+.+|||.|+++|...++-.+..+|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3568999999999999999999999999999999985 6667778884 9999999999999999999888899999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++||++.++.+|+++ .+|+.++.+++.     +.|+++||+|.||.++
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-----~vpiiLVGtk~DLr~d  124 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHCP-----NVPIILVGTKADLRDD  124 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhCC-----CCCEEEEeehHHhhhC
Confidence            999999999999997 689999998874     8999999999999954

>cd04157 Arl6 Arl6 subfamily

Probab=99.91  E-value=9.8e-24  Score=139.26  Aligned_cols=118  Identities=19%  Similarity=0.336  Sum_probs=93.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +|+++|++++|||||+++|.+... ...+.++.+.+..  .+..  ..+.+++|||||+..+...+..+++.+|++++||
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 4455666654332  2232  3478999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++.++.....|+..+..... ....+.|+++|+||+|+.+.
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~NK~Dl~~~  119 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPD-IKHRRVPILFFANKMDLPDA  119 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcc-cccCCCCEEEEEeCccccCC
Confidence            99999999888888777754321 11237899999999999764

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.91  E-value=6.8e-24  Score=139.87  Aligned_cols=115  Identities=25%  Similarity=0.469  Sum_probs=91.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d   89 (156)
                      +|+++|++|+|||||+++|.+..+... .++.+.+.  ..+... ..+.+.+||+||+..+...+..++..+|++++|||
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999998876533 45554332  233332 34789999999999998889999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      ++++.++.....|+..+.....   ..+.|+++|+||+|+..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~  115 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEH---IKGVPVVLLANKQDLPG  115 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchh---hcCCCEEEEEECccccc
Confidence            9999988888777777654321   23789999999999975

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.9e-25  Score=142.30  Aligned_cols=143  Identities=41%  Similarity=0.657  Sum_probs=119.3

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC---------CeEEEEEEEeCCCcccccchhhh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE---------DRLFTLQIWDTAGQERFQSLGVA   76 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~~~~~   76 (156)
                      +..+|++.+|++|+||||++.++...++...-..+.+.+...+.+-++         +..+.+++|||.|++.+++...+
T Consensus         7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA   86 (219)
T KOG0081|consen    7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA   86 (219)
T ss_pred             HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence            446789999999999999999999999887777788877766666552         23577899999999999999999


Q ss_pred             heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhccccc
Q 031598           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYSL  155 (156)
Q Consensus        77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~~  155 (156)
                      +++.+-+++++||..+..||-+++.|+.++.-+....   +..++++|||+||.+.  +.++.++...  .+.+.++|.
T Consensus        87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE---~PDivlcGNK~DL~~~--R~Vs~~qa~~--La~kyglPY  158 (219)
T KOG0081|consen   87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE---NPDIVLCGNKADLEDQ--RVVSEDQAAA--LADKYGLPY  158 (219)
T ss_pred             HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccC---CCCEEEEcCccchhhh--hhhhHHHHHH--HHHHhCCCe
Confidence            9999999999999999999999999999998665544   6679999999999987  7666654443  677777664

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.90  E-value=5.9e-23  Score=137.42  Aligned_cols=118  Identities=27%  Similarity=0.451  Sum_probs=94.0

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      ..++|+++|++++|||||++++.+..+.. +.++.+.+.  ....++  ...+.+||+||++.+...+..+++.+|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            35899999999999999999999877654 455555443  233344  3789999999999999899999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||+++++++.....++..+....   ...+.|+++++||+|+.+.
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~---~~~~~p~viv~NK~Dl~~~  131 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHE---DLRKAVLLVLANKQDLKGA  131 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhch---hhcCCCEEEEEECCCCCCC
Confidence            999999998888776666664332   1236899999999999753

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04129 Rho2 Rho2 subfamily

Probab=99.90  E-value=1.5e-22  Score=136.93  Aligned_cols=118  Identities=29%  Similarity=0.575  Sum_probs=97.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      .|++++|++|+|||||++++....+.+.+.++....+ ...+..++....+.+||++|++.+.......++.+++++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999997777666666554333 345566777788999999999888877777889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++++|+.+. .|...+.....     +.|+++|+||+|+.++
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~-----~~piilvgnK~Dl~~~  120 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCP-----NVPVILVGLKKDLRQD  120 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEeeChhhhhC
Confidence            999999999986 58887765432     6899999999999653

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.90  E-value=6.9e-23  Score=134.84  Aligned_cols=115  Identities=22%  Similarity=0.493  Sum_probs=93.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d   89 (156)
                      ||+++|.+|||||||++++.+.... ...++.+...  ..+.+..  ..+.+||+||+..+...+..+++.+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            6899999999999999999988743 3455554433  3334443  789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++.++.....++..+.....   ..+.|+++|+||+|+...
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~~  115 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEE---LKGVPLLIFANKQDLPGA  115 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEeeccCCccc
Confidence            9999999998888877765443   237899999999999865

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.90  E-value=5.7e-23  Score=136.34  Aligned_cols=116  Identities=25%  Similarity=0.433  Sum_probs=89.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCC------CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      +|+++|++|+|||||+++|.+...      ...+.++.+...  ..+.++  ...+.+|||||++.+..++..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999976432      122233433332  334444  3789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||++++.++.....++..+.+...   ..+.|+++|+||+|+...
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~NK~D~~~~  122 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEA---LEGVPLLILANKQDLPDA  122 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChh---hcCCCEEEEEEccccccC
Confidence            9999999999888888777777654322   237899999999999754

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04151 Arl1 Arl1 subfamily

Probab=99.90  E-value=1.4e-22  Score=133.57  Aligned_cols=115  Identities=22%  Similarity=0.405  Sum_probs=88.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d   89 (156)
                      ||+++|++++|||||++++....+.. ..++.+.+.  ....+.  ...+++|||||+..+..++..+++.++++++|||
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998776543 344444332  233333  4789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++.++.....++..+.+..   ...+.|+++|+||+|+.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~Dl~~~  115 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEE---ELKGAVLLVFANKQDMPGA  115 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhch---hhcCCcEEEEEeCCCCCCC
Confidence            999988777655555443321   1236899999999999754

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.90  E-value=8.1e-23  Score=130.71  Aligned_cols=120  Identities=24%  Similarity=0.496  Sum_probs=98.7

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      +.+.++|+++|..+|||||++++|.+.. .+...|+.+.+  .....+++  +++++||.+|+..++..|.+|++..|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~--Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQ--IKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCcccee--eEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            3457999999999999999999999887 44456666644  44454555  8999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|+|.+++..+++....+..+..   .....+.|+++++||.|++..
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~---eerlaG~~~Lvlank~dl~~~  132 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLV---EERLAGAPLLVLANKQDLPGA  132 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHh---hhhhcCCceEEEEecCcCccc
Confidence            999999999998887665555553   333447899999999999954

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.90  E-value=5.3e-23  Score=137.79  Aligned_cols=120  Identities=30%  Similarity=0.583  Sum_probs=97.5

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+..+|+++|+.+|||||+++++....... ..|+.+..  ...+.+.+  +.+.+||.+|+..+...|..++..++++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence            3677999999999999999999999765432 45555443  44455555  7899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|+|+++++.+.+....+..+...   ....+.|+++++||.|+++.
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~---~~~~~~piLIl~NK~D~~~~  130 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLND---PELKDIPILILANKQDLPDA  130 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTS---GGGTTSEEEEEEESTTSTTS
T ss_pred             EEEEecccceeecccccchhhhcch---hhcccceEEEEeccccccCc
Confidence            9999999999888887766666543   22337899999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.90  E-value=1.7e-22  Score=136.37  Aligned_cols=119  Identities=21%  Similarity=0.388  Sum_probs=93.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ++.++|+++|.+|+|||||++++.+..+.. +.++.+.+  ...+...+  +.+.+||+||+..+...+..+++.+|+++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            456899999999999999999999876542 23443332  23333444  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|+|++++.++.....++..+.+..   ...+.|+++|+||+|+...
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~---~~~~~piliv~NK~Dl~~~  133 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDE---ELATVPFLILGNKIDAPYA  133 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCh---hhcCCCEEEEEeCccccCC
Confidence            9999999999888877777665422   2237899999999999753

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.4e-23  Score=130.54  Aligned_cols=141  Identities=34%  Similarity=0.633  Sum_probs=123.8

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      -+..+|-+++|+-|+|||.|+..|...++..+-..+.+.......+.+.+..++++||||.|++.++.....+++.+.+.
T Consensus         8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga   87 (215)
T KOG0097|consen    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   87 (215)
T ss_pred             hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence            45678999999999999999999998888777778888888888889999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhccc
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKY  153 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~  153 (156)
                      ++|||...+..+..+..|+..-+++-.    ++.-+++++||.||.++  +.+.+||.+.  +..+.++
T Consensus        88 lmvyditrrstynhlsswl~dar~ltn----pnt~i~lignkadle~q--rdv~yeeak~--faeengl  148 (215)
T KOG0097|consen   88 LMVYDITRRSTYNHLSSWLTDARNLTN----PNTVIFLIGNKADLESQ--RDVTYEEAKE--FAEENGL  148 (215)
T ss_pred             eEEEEehhhhhhhhHHHHHhhhhccCC----CceEEEEecchhhhhhc--ccCcHHHHHH--HHhhcCe
Confidence            999999999999999999988765543    37889999999999988  8899987766  4444443

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.89  E-value=1.4e-24  Score=134.75  Aligned_cols=136  Identities=37%  Similarity=0.625  Sum_probs=117.5

Q ss_pred             EEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEEC
Q 031598           12 IILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV   90 (156)
Q Consensus        12 ~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~   90 (156)
                      +++|++++|||.|+-+|....+- .+-..+.+.++-.+.+..++..+++++|||.|++.+++....+++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            36899999999999888765543 34467778888888888899999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhccccc
Q 031598           91 NSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYSL  155 (156)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~~  155 (156)
                      .+..||++.+.|+.++.++.+.    .+.+.++|||||+..+  +.+..++.+.  ....+++||
T Consensus        81 ankasfdn~~~wlsei~ey~k~----~v~l~llgnk~d~a~e--r~v~~ddg~k--la~~y~ipf  137 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKE----AVALMLLGNKCDLAHE--RAVKRDDGEK--LAEAYGIPF  137 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHh----hHhHhhhccccccchh--hccccchHHH--HHHHHCCCc
Confidence            9999999999999999988775    6678899999999888  7888877666  555666665

>cd00879 Sar1 Sar1 subfamily

Probab=99.89  E-value=3.4e-22  Score=135.42  Aligned_cols=118  Identities=25%  Similarity=0.458  Sum_probs=94.2

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+..+|+++|++|||||||++++.+..+. .+.++.+..  ...+.+++  ..+.+||+||+..+...+..+++.+++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45689999999999999999999987753 344454433  23444554  67999999999988888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      +|+|.++..++.....++..+.....   ..+.|+++|+||+|+.+
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~---~~~~pvivv~NK~Dl~~  134 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEE---LANVPFLILGNKIDLPG  134 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCcc---ccCCCEEEEEeCCCCCC
Confidence            99999999988887777777654322   23689999999999974

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.89  E-value=5.3e-22  Score=130.04  Aligned_cols=115  Identities=30%  Similarity=0.533  Sum_probs=94.6

Q ss_pred             EEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEEC
Q 031598           11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV   90 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~   90 (156)
                      |+++|++|+|||||++++.+.++...+.++.+.....  ....+  ..+.+||+||+..+...+..+++.+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7899999999999999999998877777776655432  33333  7899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           91 NSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++.++.....++..+....   ...+.|+++|+||+|+.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~D~~~~  116 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKP---SLEGIPLLVLGNKNDLPGA  116 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcCh---hhcCCCEEEEEeCccccCC
Confidence            99988888777777665422   2237899999999999765

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.89  E-value=1.1e-21  Score=135.52  Aligned_cols=122  Identities=40%  Similarity=0.672  Sum_probs=103.6

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .+||+++|++|+|||||+++|.+..+...+.++.+..............+.+.+|||+|++.+...+..++..++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999888888877666565555554478899999999999999999999999999999


Q ss_pred             EECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           88 YDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        88 ~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      ||..+.. +++....|...+.....    ++.|+++|+||+|+....
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~----~~~~iilv~nK~Dl~~~~  127 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAP----DDVPILLVGNKIDLFDEQ  127 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCC----CCceEEEEecccccccch
Confidence            9999954 45556788888776553    268999999999999873

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.9e-21  Score=127.11  Aligned_cols=120  Identities=20%  Similarity=0.470  Sum_probs=100.6

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      .....+|+++|..++||||++++|...+.... .||.+..  +..+.+++  ++|++||..|++.++..|..+++..+++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfn--VE~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFN--VETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccc--eeEEEEcc--eEEEEEecCCCcccccchhhhccCCcEE
Confidence            34568999999999999999999998876554 7777765  55566665  8999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |+|+|.++++.+.+.++.+..+.   ......+.|+++++||.|+++.
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l---~~~~l~~~~llv~aNKqD~~~a  133 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRML---AEPELRNAPLLVFANKQDLPGA  133 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHH---cCcccCCceEEEEechhhcccc
Confidence            99999999998888766555554   4444568999999999999875

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.87  E-value=1.1e-20  Score=123.33  Aligned_cols=120  Identities=28%  Similarity=0.620  Sum_probs=99.8

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|.+|+|||||++++.+......+.++.+.+.....+..++..+.+.+||+||+..+...+....+.++.++.++
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~   81 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF   81 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence            79999999999999999999998877677777777776666777776688999999999999888888889999999999


Q ss_pred             ECCCh-hhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSM-KSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |.... .++.... .|...+......    +.|+++|+||+|+...
T Consensus        82 d~~~~v~~~~~~~~~~~~~~~~~~~~----~~p~ivv~nK~D~~~~  123 (161)
T TIGR00231        82 DIVILVLDVEEILEKQTKEIIHHAES----NVPIILVGNKIDLRDA  123 (161)
T ss_pred             EEeeeehhhhhHhHHHHHHHHHhccc----CCcEEEEEEcccCCcc
Confidence            99887 6666654 666666655432    6799999999999875

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.87  E-value=2e-23  Score=135.57  Aligned_cols=121  Identities=35%  Similarity=0.655  Sum_probs=113.4

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      .-+|++++|..++||||+|+++...-+...+..+.+.+.......+..+..++.+||+.|++++..+..++++++.+.++
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL   98 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL   98 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence            45899999999999999999999888888889999999988888888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||+..+..||+...+|+..+.....     .+|.++|-||+|+.++
T Consensus        99 VFSTTDr~SFea~~~w~~kv~~e~~-----~IPtV~vqNKIDlved  139 (246)
T KOG4252|consen   99 VFSTTDRYSFEATLEWYNKVQKETE-----RIPTVFVQNKIDLVED  139 (246)
T ss_pred             EEecccHHHHHHHHHHHHHHHHHhc-----cCCeEEeeccchhhHh
Confidence            9999999999999999999987665     8999999999999987

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.87  E-value=1.7e-21  Score=133.31  Aligned_cols=121  Identities=18%  Similarity=0.302  Sum_probs=89.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecc-cEEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA-DCCVLVY   88 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~~l~v~   88 (156)
                      +|+++|+++||||||+++|.+..+......+ ............+....+.+||+||+..+...+..+++.+ +++++|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999988765543332 2222221221113346799999999999998888899998 9999999


Q ss_pred             ECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |+.+. .++.....++..+...... ...++|+++|+||+|+...
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~-~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEK-VKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhh-ccCCCCEEEEecchhhccc
Confidence            99997 6777776666555433221 1237899999999999765

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd04155 Arl3 Arl3 subfamily

Probab=99.86  E-value=1.5e-20  Score=125.39  Aligned_cols=120  Identities=26%  Similarity=0.462  Sum_probs=93.3

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+.++|+++|++|+|||||++++.+..+. ...++.+.+  ...+...+  ..+.+||++|+..+...+..+++.+|++
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~--~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i   85 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFN--IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL   85 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence            344799999999999999999999987643 234454433  23344444  6799999999988888888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|+|.++..++.....++..+.....   ..++|+++++||+|+.+.
T Consensus        86 i~v~D~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~  130 (173)
T cd04155          86 IYVIDSADKKRLEEAGAELVELLEEEK---LAGVPVLVFANKQDLATA  130 (173)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhChh---hcCCCEEEEEECCCCccC
Confidence            999999999888877766666654322   226899999999999754

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01890 LepA LepA subfamily

Probab=99.85  E-value=1.3e-20  Score=126.38  Aligned_cols=116  Identities=17%  Similarity=0.275  Sum_probs=83.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC-------CCCCCCC------ceeeEEEEEE--EEE---CCeEEEEEEEeCCCcccc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK-------FSNQYKA------TIGADFLTKE--VQF---EDRLFTLQIWDTAGQERF   70 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~~~   70 (156)
                      .+|+++|.+++|||||+++|.+..       ....+.+      +.+.+.....  ..+   ++..+.+++|||||++.+
T Consensus         1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   80 (179)
T cd01890           1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF   80 (179)
T ss_pred             CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence            479999999999999999998642       1111111      1122222222  222   556788999999999999


Q ss_pred             cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ...+..+++.+|++++|||+++..++.....|....    .    .++|+++|+||+|+.+.
T Consensus        81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~----~~~~iiiv~NK~Dl~~~  134 (179)
T cd01890          81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----E----NNLEIIPVINKIDLPSA  134 (179)
T ss_pred             HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----H----cCCCEEEEEECCCCCcC
Confidence            989999999999999999999876666655554322    1    16799999999999754

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01878 HflX HflX subfamily

Probab=99.85  E-value=2e-20  Score=128.18  Aligned_cols=121  Identities=19%  Similarity=0.222  Sum_probs=83.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cchhhh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVA   76 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~   76 (156)
                      +..++|+++|++|||||||++++.+........+..+.+.....+.+.+. ..+.+|||||....         ... ..
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LE  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence            44689999999999999999999988643322222222333333444442 37999999996321         111 12


Q ss_pred             heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+..+|++++|+|++++.++.....|...+.... .   .+.|+++|+||+|+...
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~-~---~~~~viiV~NK~Dl~~~  168 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELG-A---EDIPMILVLNKIDLLDD  168 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcC-c---CCCCEEEEEEccccCCh
Confidence            3567999999999999888777666666554332 1   26799999999999765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01898 Obg Obg subfamily

Probab=99.85  E-value=2.1e-20  Score=124.30  Aligned_cols=120  Identities=20%  Similarity=0.172  Sum_probs=81.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc----ccchhhhh---eeccc
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAF---YRGAD   82 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~~   82 (156)
                      +|+++|.+++|||||+++|.+........+..+.......+.+++. ..+.+|||||...    ...+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            6899999999999999999976532111111112222222333332 3799999999632    11222333   34699


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           83 CCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        83 ~~l~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++|+|++++ .+++.+..|.+.+......  ..+.|+++|+||+|+.+.
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~--~~~~p~ivv~NK~Dl~~~  129 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPE--LLEKPRIVVLNKIDLLDE  129 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCcc--ccccccEEEEEchhcCCc
Confidence            99999999999 7888888888888765321  226799999999999765

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04171 SelB SelB subfamily

Probab=99.85  E-value=2.6e-20  Score=122.93  Aligned_cols=113  Identities=20%  Similarity=0.167  Sum_probs=76.8

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC---CCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      +.|+++|.+++|||||+++|.+..   +.....++.+.+.......+.. ...+++|||||++.+......+++.+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            368999999999999999998643   2222222333333333344432 358999999999888766677788999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|+|+++   +.+...+    ..+ ....     ..|+++|+||+|+.++
T Consensus        80 ~V~d~~~~~~~~~~~~~----~~~-~~~~-----~~~~ilv~NK~Dl~~~  119 (164)
T cd04171          80 LVVAADEGIMPQTREHL----EIL-ELLG-----IKRGLVVLTKADLVDE  119 (164)
T ss_pred             EEEECCCCccHhHHHHH----HHH-HHhC-----CCcEEEEEECccccCH
Confidence            9999987   3332222    111 1111     2489999999999764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.85  E-value=1.5e-20  Score=127.84  Aligned_cols=117  Identities=20%  Similarity=0.221  Sum_probs=83.1

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc--CCCCCCC------------CCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN--KKFSNQY------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL   73 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   73 (156)
                      ..+|+++|.+++|||||+++|.+  ..+....            ..+.+.+.......+......+++|||||++.+...
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~   81 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE   81 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence            46899999999999999999996  3332221            112333333333344445578999999999999999


Q ss_pred             hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        74 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +..+++.+|++++|||+++.. +.....++..+..    .   +.|+++|+||+|+...
T Consensus        82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~---~~p~iiv~NK~Dl~~~  132 (194)
T cd01891          82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----L---GLKPIVVINKIDRPDA  132 (194)
T ss_pred             HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----c---CCCEEEEEECCCCCCC
Confidence            999999999999999998742 2222223332221    1   6799999999999754

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.84  E-value=4.7e-20  Score=122.42  Aligned_cols=117  Identities=21%  Similarity=0.207  Sum_probs=76.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc---------hhhhhee
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---------LGVAFYR   79 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~   79 (156)
                      .+|+++|.+++|||||+++|.+..+.....+..+..........  ....+++|||||+.....         .......
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            37999999999999999999988754322222122222222222  347899999999742110         0011112


Q ss_pred             cccEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           80 GADCCVLVYDVNSMKSF--DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        80 ~~~~~l~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..|++++|+|++++.++  +....|+..+....     .+.|+++|+||+|+.+.
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~  128 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-----KNKPVIVVLNKIDLLTF  128 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-----CcCCeEEEEEccccCch
Confidence            36899999999987653  44556666665433     26799999999999765

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.84  E-value=3.3e-21  Score=121.35  Aligned_cols=118  Identities=25%  Similarity=0.465  Sum_probs=98.1

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .+.+.++|...+|||||++..+...+.+.-.|+.|..  ..  .++.+.+.+.+||.||+..++.+|..|.++++++++|
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mr--k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MR--KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eE--EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            4788999999999999999999888777777777754  22  3345558899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|+++++.+...+..+..   ++......++|++++|||.|+++.
T Consensus        96 VDaad~~k~~~sr~EL~~---LL~k~~l~gip~LVLGnK~d~~~A  137 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHD---LLDKPSLTGIPLLVLGNKIDLPGA  137 (186)
T ss_pred             eecCCcccchhhHHHHHH---HhcchhhcCCcEEEecccccCccc
Confidence            999999877766544444   445556669999999999999976

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.84  E-value=6.8e-20  Score=121.55  Aligned_cols=115  Identities=23%  Similarity=0.238  Sum_probs=82.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      .|+++|.+++|||||+++|....+.....++.+.+.....+... .....+.+|||||+..+..++...++.+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999887665444444333333334333 13468999999999988888888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |.++....+... .+..+..       .+.|+++|+||+|+.+.
T Consensus        82 d~~~~~~~~~~~-~~~~~~~-------~~~p~ivv~NK~Dl~~~  117 (168)
T cd01887          82 AADDGVMPQTIE-AIKLAKA-------ANVPFIVALNKIDKPNA  117 (168)
T ss_pred             ECCCCccHHHHH-HHHHHHH-------cCCCEEEEEEceecccc
Confidence            999853222111 1112211       16799999999999754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.83  E-value=2e-19  Score=116.39  Aligned_cols=116  Identities=47%  Similarity=0.871  Sum_probs=90.9

Q ss_pred             EEcCCCCChhHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECC
Q 031598           13 ILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN   91 (156)
Q Consensus        13 v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~   91 (156)
                      ++|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+...++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998876 34444444 5555666666666789999999999888888888889999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           92 SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++.++.....|.........   ..+.|+++|+||+|+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~nk~D~~~~  117 (157)
T cd00882          80 DRESFENVKEWLLLILINKE---GENIPIILVGNKIDLPEE  117 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhc---cCCCcEEEEEeccccccc
Confidence            99988887776322222222   227899999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.82  E-value=2e-19  Score=131.97  Aligned_cols=120  Identities=19%  Similarity=0.209  Sum_probs=84.6

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc-c--------ccchhhhh
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-R--------FQSLGVAF   77 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~--------~~~~~~~~   77 (156)
                      ..++|+++|.+++|||||+|+|.+........+..+.+.....+.+++. ..+.+|||+|.. .        +...+ ..
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence            4589999999999999999999988643333333334445555666432 479999999962 1        22111 24


Q ss_pred             eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +..+|++++|+|++++.+++....|...+... ..   .+.|+++|+||+|+.++
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~---~~~piIlV~NK~Dl~~~  316 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA---EDIPQLLVYNKIDLLDE  316 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc---CCCCEEEEEEeecCCCh
Confidence            67899999999999998877665555544332 21   26799999999999754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=2.5e-19  Score=112.12  Aligned_cols=119  Identities=20%  Similarity=0.414  Sum_probs=97.8

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +.++|+.+|..++||||++..+.-.. +.+..|+.|..  ...+++.+  ..|++||++|++..+..|..++....++++
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFn--vetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFN--VETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCC-Cccccccccee--EEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            35899999999999999999998665 44456666654  55566666  789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      |+|.++++..++.   ..++.+.+........|+++.+||.|+++..
T Consensus        91 V~Dsa~~dr~eeA---r~ELh~ii~~~em~~~~~LvlANkQDlp~A~  134 (180)
T KOG0071|consen   91 VVDSADRDRIEEA---RNELHRIINDREMRDAIILILANKQDLPDAM  134 (180)
T ss_pred             EEeccchhhHHHH---HHHHHHHhCCHhhhcceEEEEecCccccccc
Confidence            9999998665555   4555666666666689999999999999863

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.81  E-value=7.3e-19  Score=132.35  Aligned_cols=116  Identities=22%  Similarity=0.325  Sum_probs=84.7

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch--------hhh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVA   76 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~   76 (156)
                      +..++|+++|++|+|||||+++|.+.... ....++.+.+.....+.+++  ..+.+|||||.......        ...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            34589999999999999999999987532 22234444555566666666  56799999997654322        235


Q ss_pred             heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++.+|++++|||.+++.+++..  |+..+..       .+.|+++|+||+|+.+.
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-------~~~piIlV~NK~Dl~~~  325 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK-------SKKPFILVLNKIDLKIN  325 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH--HHHHHhh-------CCCCEEEEEECccCCCc
Confidence            67889999999999998876654  5444321       16799999999999754

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PTZ00099 rab6; Provisional

Probab=99.81  E-value=4.7e-19  Score=118.68  Aligned_cols=97  Identities=37%  Similarity=0.727  Sum_probs=85.5

Q ss_pred             CCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcC
Q 031598           32 KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS  111 (156)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~  111 (156)
                      .+.+.+.++.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+|+.+..|+..+.....
T Consensus         4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~   83 (176)
T PTZ00099          4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG   83 (176)
T ss_pred             CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            45667788888888888888889899999999999999999999999999999999999999999999999998876532


Q ss_pred             CCCCCCCcEEEEEecCCCCCC
Q 031598          112 PSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus       112 ~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                          .+.|+++|+||+|+.+.
T Consensus        84 ----~~~piilVgNK~DL~~~  100 (176)
T PTZ00099         84 ----KDVIIALVGNKTDLGDL  100 (176)
T ss_pred             ----CCCeEEEEEECcccccc
Confidence                26899999999999764

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.81  E-value=4.5e-19  Score=116.41  Aligned_cols=108  Identities=20%  Similarity=0.237  Sum_probs=76.6

Q ss_pred             EEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc------hhhhhe--ecccEE
Q 031598           13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS------LGVAFY--RGADCC   84 (156)
Q Consensus        13 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~~~~~   84 (156)
                      ++|.+|+|||||++++.+........++.+.+.....+.+++  ..+.+|||||+..+..      +...++  +.+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998764433344444444455555555  5789999999876653      244555  489999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|+|..++....   .+...+..    .   +.|+++|+||+|+.+.
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~----~---~~~~iiv~NK~Dl~~~  116 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE----L---GLPVVVALNMIDEAEK  116 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH----c---CCCEEEEEehhhhccc
Confidence            9999999865422   23333321    1   6799999999999765

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.81  E-value=1e-18  Score=127.38  Aligned_cols=121  Identities=16%  Similarity=0.133  Sum_probs=85.6

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc-------ccchhhhheecc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRGA   81 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~   81 (156)
                      ..|+++|.++||||||++++.+.+..-...+..+.......+.+.+ ...+.+||+||..+       ....+...++.+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            5689999999999999999998764322222222333333444422 24699999999532       222333456679


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++++|||+++.++++.+..|..++..+...  ..+.|+++|+||+|+.+.
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~--L~~kp~IIV~NKiDL~~~  286 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPE--LADKPRILVLNKIDLLDE  286 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhh--cccCCeEEEEECcccCCc
Confidence            9999999999888888888888888765321  226799999999999765

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.80  E-value=1e-18  Score=109.63  Aligned_cols=122  Identities=25%  Similarity=0.492  Sum_probs=98.1

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      ...+.+||+++|..++|||||+..|.+.+ +++-.|+.+..  ...+.+. +.+.+++||..|+...+..|..|+...|+
T Consensus        13 ~t~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~GFn--~k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~   88 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNGFN--TKKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDG   88 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHHHccCC-hhhccccCCcc--eEEEeec-CcEEEEEEecCCccccchhhhhhhhccce
Confidence            34667999999999999999999999877 34445665554  4444443 44799999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|+|.++...|+++..-+-++..-   .....+|+++.+||.|+.-.
T Consensus        89 lIyVIDS~D~krfeE~~~el~ELlee---eKl~~vpvlIfankQdllta  134 (185)
T KOG0074|consen   89 LIYVIDSTDEKRFEEISEELVELLEE---EKLAEVPVLIFANKQDLLTA  134 (185)
T ss_pred             EEEEEeCCchHhHHHHHHHHHHHhhh---hhhhccceeehhhhhHHHhh
Confidence            99999999999999886655555533   33347899999999999754

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.80  E-value=3.7e-19  Score=119.57  Aligned_cols=117  Identities=22%  Similarity=0.247  Sum_probs=76.7

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc----------cccchh
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSLG   74 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~   74 (156)
                      +.+..+|+++|.+|+|||||++++.+........++.+.+.....+..++   .+.+|||||..          .+..+.
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~   91 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI   91 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence            35668999999999999999999998763333334444443333333332   68999999942          233333


Q ss_pred             hhhee---cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           75 VAFYR---GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        75 ~~~~~---~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+++   .++++++|+|.+++.+.... .+...+. .      .+.|+++|+||+|+...
T Consensus        92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~-~------~~~pviiv~nK~D~~~~  144 (179)
T TIGR03598        92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLR-E------RGIPVLIVLTKADKLKK  144 (179)
T ss_pred             HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHH-H------cCCCEEEEEECcccCCH
Confidence            34444   35899999999886544443 2222221 1      16799999999999754

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.79  E-value=2.8e-18  Score=112.30  Aligned_cols=112  Identities=24%  Similarity=0.329  Sum_probs=78.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch--------hhhhee
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAFYR   79 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~   79 (156)
                      ++|+++|++|+|||||++++.+..... ...+..+.......+...+  ..+++|||||...+...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            589999999999999999999876421 1122322333333344443  67899999996554321        224567


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        80 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+|++++|+|++++.+......+..          ..+.|+++|+||+|+.+.
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~----------~~~~~vi~v~nK~D~~~~  122 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL----------PADKPIIVVLNKSDLLPD  122 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh----------hcCCCEEEEEEchhcCCc
Confidence            8999999999998776665433322          127899999999999875

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.8e-18  Score=113.36  Aligned_cols=122  Identities=28%  Similarity=0.620  Sum_probs=110.9

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ...++++++|+.|.||||++.+.+...+..++.++.+.....-.+..+.+.++|..|||.|++.+......++-.+...+
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            34899999999999999999999999999999999998776666655555699999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |+||+.......++..|...+.+.+.     ++|++++|||.|....
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~~-----NiPiv~cGNKvDi~~r  129 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVRE-----NIPIVLCGNKVDIKAR  129 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHhc-----CCCeeeeccceecccc
Confidence            99999999999999999999999887     8999999999999875

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.79  E-value=3.1e-19  Score=115.53  Aligned_cols=96  Identities=26%  Similarity=0.323  Sum_probs=67.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc-----cccchhhhheecccEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-----RFQSLGVAFYRGADCC   84 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~~~   84 (156)
                      ||+++|++++|||||+++|.+....  +.++.+       ..+.     -.+|||||..     .+..... .++.+|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYN-----DGAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEc-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            7999999999999999999977642  222221       1111     1689999972     2333323 47899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      ++|||++++.++.. ..|...    .      ..|+++|+||+|+.+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~----~------~~p~ilv~NK~Dl~~  102 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASI----F------VKPVIGLVTKIDLAE  102 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHh----c------cCCeEEEEEeeccCC
Confidence            99999999988754 233321    1      239999999999975

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.79  E-value=1.7e-18  Score=134.42  Aligned_cols=118  Identities=16%  Similarity=0.249  Sum_probs=87.0

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCC-------CCCCCC------CceeeEEEEEE--EEE---CCeEEEEEEEeCCCcc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKK-------FSNQYK------ATIGADFLTKE--VQF---EDRLFTLQIWDTAGQE   68 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~-------~~~~~~------~~~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~   68 (156)
                      ..+||+++|..++|||||+++|+...       +...+.      ...+.+.....  +.+   ++..+.+++|||||+.
T Consensus         2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~   81 (595)
T TIGR01393         2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   81 (595)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence            46899999999999999999998642       111111      11233333222  222   4556899999999999


Q ss_pred             cccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        69 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+...+..+++.+|++++|||+++..+.+....|...+.        .++|+++|+||+|+.+.
T Consensus        82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--------~~ipiIiViNKiDl~~~  137 (595)
T TIGR01393        82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--------NDLEIIPVINKIDLPSA  137 (595)
T ss_pred             HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--------cCCCEEEEEECcCCCcc
Confidence            999999999999999999999999777666655554331        16799999999999754

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.79  E-value=1.6e-18  Score=115.72  Aligned_cols=119  Identities=23%  Similarity=0.211  Sum_probs=78.0

Q ss_pred             EEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc----cch---hhhheecccEEE
Q 031598           13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSL---GVAFYRGADCCV   85 (156)
Q Consensus        13 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~~~~l   85 (156)
                      ++|++|+|||||++++.+.+......+..+.+.......+++ ...+.+|||||....    ..+   ....++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999998864211111222222223333441 357899999996321    112   233467899999


Q ss_pred             EEEECCCh------hhHHHHHHHHHHHHHhcCC---CCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSM------KSFDNLNNWREEFLIQASP---SDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|+|+.++      .++.....|...+......   ....+.|+++|+||+|+...
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~  135 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA  135 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence            99999988      5677777777766543221   00126799999999999865

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.79  E-value=3.2e-18  Score=130.40  Aligned_cols=116  Identities=20%  Similarity=0.299  Sum_probs=81.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc--------ccchhhhh
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAF   77 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~   77 (156)
                      ...+|+++|.+++|||||+++|.+.... ....++.+.+.........+  ..+.+|||||.+.        +...+..+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            4578999999999999999999987642 22333343444444455555  4688999999652        33345567


Q ss_pred             eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++.+|++++|||+++..++.. ..+...+..       .+.|+++|+||+|+...
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-------~~~piilV~NK~Dl~~~  161 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR-------SGKPVILAANKVDDERG  161 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECccCCcc
Confidence            889999999999998765442 233333321       17899999999999753

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.78  E-value=2.7e-18  Score=129.76  Aligned_cols=114  Identities=26%  Similarity=0.340  Sum_probs=83.0

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch--------hhhh
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF   77 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   77 (156)
                      ..++|+++|.+++|||||+++|.+.+.. ....+..+.+.....+.+++  ..+.+|||||...+...        ....
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            3489999999999999999999987642 22233344455555566655  57899999997654332        2235


Q ss_pred             eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++.+|++++|||.+++.+++....|..          ..+.|+++|+||+|+.+.
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~----------~~~~piiiV~NK~DL~~~  336 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE----------LKDKPVIVVLNKADLTGE  336 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh----------cCCCCcEEEEEhhhcccc
Confidence            788999999999999887765433322          126799999999999764

>PRK04213 GTP-binding protein; Provisional

Probab=99.78  E-value=2.9e-18  Score=117.12  Aligned_cols=117  Identities=21%  Similarity=0.260  Sum_probs=74.5

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC-----------cccccch
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------QERFQSL   73 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~   73 (156)
                      +...++|+++|.+++|||||+++|.+..+.....++  .+.........    .+.+|||||           ++.+...
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE   79 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence            345689999999999999999999988765433443  33333333322    589999999           4555555


Q ss_pred             hhhhee----cccEEEEEEECCChhhHHHHHHH--------HHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           74 GVAFYR----GADCCVLVYDVNSMKSFDNLNNW--------REEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        74 ~~~~~~----~~~~~l~v~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +..++.    .++++++|+|.++...+.  ..|        ...+...+..   .++|+++|+||+|+.+.
T Consensus        80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~  145 (201)
T PRK04213         80 IVRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKN  145 (201)
T ss_pred             HHHHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCc
Confidence            555543    457888888876532210  111        0111111111   17899999999999764

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.78  E-value=4.5e-19  Score=115.54  Aligned_cols=113  Identities=19%  Similarity=0.275  Sum_probs=77.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc------cchhhhhe--ec
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------QSLGVAFY--RG   80 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~~--~~   80 (156)
                      ++|+++|.|++|||||+|+|.+.+......|..+.+.....+.+.+  ..+.++|+||....      +.....++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999885444455555666666677767  67899999993322      22333343  57


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      .|+++.|+|+++.+.-..+   ..++...       ++|+++|+||+|+..+.
T Consensus        79 ~D~ii~VvDa~~l~r~l~l---~~ql~e~-------g~P~vvvlN~~D~a~~~  121 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNLYL---TLQLLEL-------GIPVVVVLNKMDEAERK  121 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHHH---HHHHHHT-------TSSEEEEEETHHHHHHT
T ss_pred             CCEEEEECCCCCHHHHHHH---HHHHHHc-------CCCEEEEEeCHHHHHHc
Confidence            8999999999985432222   2223221       78999999999998764

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK15494 era GTPase Era; Provisional

Probab=99.78  E-value=3e-18  Score=125.42  Aligned_cols=116  Identities=26%  Similarity=0.363  Sum_probs=75.0

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC-CCceeeEEEEEEEEECCeEEEEEEEeCCCcccc-cchh-------hh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-QSLG-------VA   76 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~-------~~   76 (156)
                      .+..+|+++|.+++|||||+++|.+.++.... .+..+.+.....+..++  .++.+|||||.... ....       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            45679999999999999999999988764211 11111222333444444  57899999997432 2111       12


Q ss_pred             heecccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 FYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 ~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .++.+|++++|+|..+.  +.... .++..+..    .   +.|.++|+||+|+.+.
T Consensus       128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~----~---~~p~IlViNKiDl~~~  175 (339)
T PRK15494        128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRS----L---NIVPIFLLNKIDIESK  175 (339)
T ss_pred             HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHh----c---CCCEEEEEEhhcCccc
Confidence            46789999999997663  33433 23333321    1   4577899999999743

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.77  E-value=6.6e-18  Score=122.96  Aligned_cols=121  Identities=17%  Similarity=0.105  Sum_probs=82.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cchhhhheecc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRGA   81 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~   81 (156)
                      ..|+++|.+++|||||++++.+.+......+..+.......+.+.+ ...+.+||+||..+.       ...+...++.+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            6789999999999999999998753221112222222333344433 257899999996432       12222334579


Q ss_pred             cEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           82 DCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        82 ~~~l~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++++|||+++.   ++++.+..|..++..+..  ...+.|+++|+||+|+.++
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~--~l~~kp~IIV~NK~DL~~~  288 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP--ELAEKPRIVVLNKIDLLDE  288 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhh--hhccCCEEEEEeCccCCCh
Confidence            999999999986   677777777777765432  1226799999999999765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK11058 GTPase HflX; Provisional

Probab=99.77  E-value=6.5e-18  Score=126.64  Aligned_cols=120  Identities=19%  Similarity=0.201  Sum_probs=82.6

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc--cchhh------hhee
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF--QSLGV------AFYR   79 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~------~~~~   79 (156)
                      ..+|+++|.+++|||||+|+|.+.+......+..+.+.....+...+. ..+.+|||+|....  ...+.      ..++
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            368999999999999999999987654323333334444445555442 26789999996321  12222      2357


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        80 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+|++++|+|++++.++..+..|...+... ..   .+.|+++|+||+|+.+.
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~---~~~pvIiV~NKiDL~~~  324 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEI-DA---HEIPTLLVMNKIDMLDD  324 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHh-cc---CCCCEEEEEEcccCCCc
Confidence            899999999999998777765544444332 21   26799999999999753

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.77  E-value=8.7e-18  Score=106.74  Aligned_cols=137  Identities=28%  Similarity=0.363  Sum_probs=100.0

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCC--CCCCCCceeeEEEEEEEE-ECCeEEEEEEEeCCCcccc-cchhhhheeccc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVQ-FEDRLFTLQIWDTAGQERF-QSLGVAFYRGAD   82 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~   82 (156)
                      +..|++|+|..++|||+++..++..+.  .....++.. +.+...+. ..+....+.++||.|-... ...-..++.-+|
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            457999999999999999999985443  334455553 44444443 3455568999999996666 556667888999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhc
Q 031598           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQR  151 (156)
Q Consensus        83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~  151 (156)
                      ++++||+..+++||+.+...-..+..   .+....+|+++++||+|+.+.  +++..+-  ...||...
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk---~KdKKEvpiVVLaN~rdr~~p--~~vd~d~--A~~Wa~rE  148 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDK---HKDKKEVPIVVLANKRDRAEP--REVDMDV--AQIWAKRE  148 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhh---ccccccccEEEEechhhcccc--hhcCHHH--HHHHHhhh
Confidence            99999999999999998766666654   345558999999999999865  4444432  23355443

>TIGR00436 era GTP-binding protein Era

Probab=99.77  E-value=6.9e-18  Score=120.24  Aligned_cols=112  Identities=22%  Similarity=0.177  Sum_probs=73.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCC-CceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------hhhhheec
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRG   80 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~   80 (156)
                      +|+++|.+|+|||||+|+|.+.+...... +..+...........+  .++.+|||||......        .....++.
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            68999999999999999999987542221 1111111112222222  5799999999653211        12345688


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|++++|+|+++..+..  ..+...+..       .+.|+++|+||+|+...
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~-------~~~p~ilV~NK~Dl~~~  122 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN-------LKRPVVLTRNKLDNKFK  122 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh-------cCCCEEEEEECeeCCCH
Confidence            99999999999876654  222322221       16799999999999753

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.77  E-value=2.4e-18  Score=109.52  Aligned_cols=121  Identities=26%  Similarity=0.530  Sum_probs=107.9

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .-.+||.++|++..|||||+-.+.+..+.+.+..+.|..+..+.+.+.+..+.+.+||..|++++..+.+.....+-+++
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl   97 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL   97 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence            34699999999999999999999999888888888999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      ++||.+.+.++.++.+|+++-+.....    .+| |+||||.|+.-
T Consensus        98 FmFDLt~r~TLnSi~~WY~QAr~~Nkt----AiP-ilvGTKyD~fi  138 (205)
T KOG1673|consen   98 FMFDLTRRSTLNSIKEWYRQARGLNKT----AIP-ILVGTKYDLFI  138 (205)
T ss_pred             EEEecCchHHHHHHHHHHHHHhccCCc----cce-EEeccchHhhh
Confidence            999999999999999999988655432    334 68999999853

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.77  E-value=1.1e-17  Score=129.46  Aligned_cols=118  Identities=26%  Similarity=0.267  Sum_probs=86.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+..+|+++|..++|||||+++|.+..+.....+..+.+.....+..++. ..+++|||||++.|..++...+..+|+++
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            45689999999999999999999988776554444444444444444432 27899999999999999988899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||+++....+....    +.. ...   .++|+++++||+|+.+.
T Consensus       164 LVVda~dgv~~qT~e~----i~~-~~~---~~vPiIVviNKiDl~~~  202 (587)
T TIGR00487       164 LVVAADDGVMPQTIEA----ISH-AKA---ANVPIIVAINKIDKPEA  202 (587)
T ss_pred             EEEECCCCCCHhHHHH----HHH-HHH---cCCCEEEEEECcccccC
Confidence            9999987433222221    111 111   17899999999999754

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01889 SelB_euk SelB subfamily

Probab=99.77  E-value=4.6e-18  Score=115.47  Aligned_cols=116  Identities=19%  Similarity=0.145  Sum_probs=73.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC----CC---CCCCCCceeeEEEEEEEEEC------------CeEEEEEEEeCCCccc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK----KF---SNQYKATIGADFLTKEVQFE------------DRLFTLQIWDTAGQER   69 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~g~~~   69 (156)
                      +||+++|.+++|||||+++|.+.    .+   .....+..+.+.....+.+.            ...+.+++|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            48999999999999999999863    11   11111112222222222222            2357899999999876


Q ss_pred             ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        70 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +........+.+|++++|+|+.+.........+.  +....      +.|+++|+||+|+...
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~------~~~~iiv~NK~Dl~~~  135 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL------CKKLIVVLNKIDLIPE  135 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc------CCCEEEEEECcccCCH
Confidence            5444444456789999999998854333322221  11111      5699999999999754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.77  E-value=8.6e-18  Score=113.29  Aligned_cols=113  Identities=23%  Similarity=0.177  Sum_probs=80.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCC----------------ceeeEEEEEEEEECCeEEEEEEEeCCCcccccch
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKA----------------TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL   73 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   73 (156)
                      +|+++|.+|+|||||++++.+.........                ..+...........  ...+.+|||||+..+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            489999999999999999987765433211                11112222223333  468999999999888888


Q ss_pred             hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        74 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +..+++.+|++++|+|..++.+... ..++..+..       .+.|+++|+||+|+..+
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~-------~~~~i~iv~nK~D~~~~  129 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE-------GGLPIIVAINKIDRVGE  129 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH-------CCCCeEEEEECCCCcch
Confidence            8889999999999999988654332 233333322       27899999999999863

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04169 RF3 RF3 subfamily

Probab=99.76  E-value=8.7e-18  Score=119.25  Aligned_cols=118  Identities=22%  Similarity=0.261  Sum_probs=79.7

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCC-CCC---------C----------CceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFS-NQY---------K----------ATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~---------~----------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (156)
                      .++|+++|.+++|||||+++|+...-. ...         .          ...+.+.......+....+.+++|||||+
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~   81 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH   81 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence            478999999999999999999743110 000         0          00112222333344455589999999999


Q ss_pred             ccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        68 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      ..+.......++.+|++++|+|+++..... ...++...    ...   ++|+++++||+|+...+
T Consensus        82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~----~~~---~~P~iivvNK~D~~~a~  139 (267)
T cd04169          82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVC----RLR---GIPIITFINKLDREGRD  139 (267)
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHH----Hhc---CCCEEEEEECCccCCCC
Confidence            988877777889999999999998754322 12222222    211   78999999999997653

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.76  E-value=1.9e-17  Score=131.27  Aligned_cols=118  Identities=23%  Similarity=0.235  Sum_probs=86.2

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+...|+++|..++|||||+++|.+..+.....+..+.+.....+.+++  ..+++|||||+..|..++...+..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            35678999999999999999999988776544444433333334444444  6799999999999999999889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||+.+...-+....    +.. +..   .++|+++|+||+|+.+.
T Consensus       365 ILVVdAddGv~~qT~e~----i~~-a~~---~~vPiIVviNKiDl~~a  404 (787)
T PRK05306        365 VLVVAADDGVMPQTIEA----INH-AKA---AGVPIIVAINKIDKPGA  404 (787)
T ss_pred             EEEEECCCCCCHhHHHH----HHH-HHh---cCCcEEEEEECcccccc
Confidence            99999988432222211    111 111   17899999999999764

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.76  E-value=9.7e-18  Score=117.17  Aligned_cols=115  Identities=19%  Similarity=0.179  Sum_probs=80.0

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCC-----C--------CC---CCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFS-----N--------QY---KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL   73 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~-----~--------~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   73 (156)
                      +|+++|..|+|||||+++|+...-.     .        ..   ....+.+.......+.....++++|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999753110     0        00   011112222233333344578999999999999888


Q ss_pred             hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        74 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +..+++.+|++++|+|+.+..... ...++..+..    .   +.|+++|+||+|+...
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~----~---~~P~iivvNK~D~~~a  131 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK----L---NIPTIIFVNKIDRAGA  131 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH----c---CCCEEEEEECccccCC
Confidence            899999999999999999865432 2333443322    1   6799999999999865

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01895 EngA2 EngA2 subfamily

Probab=99.75  E-value=3e-17  Score=108.95  Aligned_cols=115  Identities=23%  Similarity=0.249  Sum_probs=75.7

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc-----------chhh
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-----------SLGV   75 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----------~~~~   75 (156)
                      .++|+++|.+|+|||||+++|.+..... ...+..........+...+  ..+.+|||||.....           ....
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            5789999999999999999999875321 1122222222233344444  457899999964331           1112


Q ss_pred             hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        76 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..++.+|++++|+|++++.+..... +...+.    ..   +.|+++|+||+|+.+.
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~---~~~~iiv~nK~Dl~~~  128 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL----EE---GKALVIVVNKWDLVEK  128 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH----hc---CCCEEEEEeccccCCc
Confidence            3457899999999999987655432 222221    11   6799999999999865

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01894 EngA1 EngA1 subfamily

Probab=99.75  E-value=1.6e-17  Score=108.76  Aligned_cols=111  Identities=21%  Similarity=0.230  Sum_probs=73.8

Q ss_pred             EEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------hhhhheeccc
Q 031598           12 IILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRGAD   82 (156)
Q Consensus        12 ~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~   82 (156)
                      +++|.+|+|||||++++.+.... ....+..+.+........++  ..+.+|||||......        .....++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999976521 11122222333333444444  6799999999876543        3345678899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++|+|..++.+....  ++..+...   .   +.|+++|+||+|+.+.
T Consensus        79 ~ii~v~d~~~~~~~~~~--~~~~~~~~---~---~~piiiv~nK~D~~~~  120 (157)
T cd01894          79 VILFVVDGREGLTPADE--EIAKYLRK---S---KKPVILVVNKVDNIKE  120 (157)
T ss_pred             EEEEEEeccccCCccHH--HHHHHHHh---c---CCCEEEEEECcccCCh
Confidence            99999999876543332  12222211   1   5799999999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.75  E-value=2e-17  Score=126.01  Aligned_cols=116  Identities=23%  Similarity=0.238  Sum_probs=81.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc----------cccchh-
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSLG-   74 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~-   74 (156)
                      ..++|+++|.+++|||||+++|.+.... ....++.+.+.....+.+++.  .+.+|||||..          .+.... 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence            4689999999999999999999987642 223334444444455556664  56799999952          222221 


Q ss_pred             hhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        75 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+++.+|++++|||++++.+++... ++..+..       .+.|+++|+||+|+.++
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~-------~~~piIiV~NK~Dl~~~  337 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE-------AGRALVLAFNKWDLVDE  337 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCCh
Confidence            23568899999999999988877653 3333321       17899999999999764

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.75  E-value=2.5e-17  Score=124.57  Aligned_cols=111  Identities=22%  Similarity=0.260  Sum_probs=78.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc--------ccchhhhhee
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFYR   79 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   79 (156)
                      .+|+++|.+|+|||||+++|.+.... ....+..+.+.........+  ..+.+|||||...        +......+++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            57999999999999999999987642 12233333444455555555  6899999999876        2333455678


Q ss_pred             cccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           80 GADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        80 ~~~~~l~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      .+|++++|+|..++.+...  +..|+..    .      +.|+++|+||+|+.+
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~----~------~~piilv~NK~D~~~  123 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRK----S------NKPVILVVNKVDGPD  123 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHH----c------CCcEEEEEECccCcc
Confidence            8999999999988544322  2222221    1      679999999999764

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.75  E-value=1.3e-17  Score=115.18  Aligned_cols=114  Identities=21%  Similarity=0.200  Sum_probs=78.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCC--C--------------CCCCceeeEEEEEEEEEC--------CeEEEEEEEeC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFS--N--------------QYKATIGADFLTKEVQFE--------DRLFTLQIWDT   64 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~   64 (156)
                      ++|+++|..++|||||+.+|+...-.  .              +.....+.........+.        +..+.+++|||
T Consensus         1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence            47999999999999999999754210  0              000011111111112222        33689999999


Q ss_pred             CCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        65 ~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      ||+..+.......++.+|++++|||+.+....+....+.. ..   . .   ++|+++|+||+|+.
T Consensus        81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~---~-~---~~p~ilviNKiD~~  138 (222)
T cd01885          81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-AL---K-E---RVKPVLVINKIDRL  138 (222)
T ss_pred             CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HH---H-c---CCCEEEEEECCCcc
Confidence            9999999999999999999999999998765543222222 21   1 1   67999999999987

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.75  E-value=5e-17  Score=121.43  Aligned_cols=120  Identities=19%  Similarity=0.156  Sum_probs=80.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc----cchhh---hheecc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSLGV---AFYRGA   81 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~---~~~~~~   81 (156)
                      ..|+++|.+++|||||++++.+.+..-...+..+.......+.+.+ ...+.+||+||....    ..+..   ..++.+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            4789999999999999999998764321122222223233333331 257999999995321    12222   334569


Q ss_pred             cEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           82 DCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        82 ~~~l~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      +++++|+|+++.   +.++....|...+..+..  ...+.|+++|+||+|+.+
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~--~L~~kP~IVV~NK~DL~~  288 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP--RLLERPQIVVANKMDLPE  288 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhch--hccCCcEEEEEeCCCCcC
Confidence            999999999864   566777777777765532  122679999999999854

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=4.3e-18  Score=109.40  Aligned_cols=118  Identities=22%  Similarity=0.388  Sum_probs=97.4

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +.-|++++|..++|||||++.|.+++..+. .||..  ..+....+.+  ++|+.+|..|+...+..|..++..+|++++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh-vPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHcccccccc-CCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            456899999999999999999998875543 44432  2245555656  789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+|+.+.+.|.+.+.-++.+...-.   ..+.|+++.+||+|.+..
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~---la~vp~lilgnKId~p~a  136 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDES---LATVPFLILGNKIDIPYA  136 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHH---HhcCcceeecccccCCCc
Confidence            9999999999998877777664432   338999999999999976

>cd04167 Snu114p Snu114p subfamily

Probab=99.74  E-value=2.5e-17  Score=113.59  Aligned_cols=114  Identities=25%  Similarity=0.293  Sum_probs=78.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCC-----------------CCceeeEEEEEEEE--E---CCeEEEEEEEeCCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQY-----------------KATIGADFLTKEVQ--F---EDRLFTLQIWDTAG   66 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~--~---~~~~~~~~i~D~~g   66 (156)
                      .+|+++|..++|||||+.+|.........                 ....+.+.......  +   ++..+.+++|||||
T Consensus         1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG   80 (213)
T cd04167           1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG   80 (213)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence            37899999999999999999864322110                 01111111111111  1   34568899999999


Q ss_pred             cccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      +..+......++..+|++++|+|+.+..+... ..++....   . .   +.|+++|+||+|+.
T Consensus        81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~---~-~---~~p~iiviNK~D~~  136 (213)
T cd04167          81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAI---L-E---GLPIVLVINKIDRL  136 (213)
T ss_pred             CcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHH---H-c---CCCEEEEEECcccC
Confidence            99998888888999999999999988765443 22323221   1 1   57999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.74  E-value=2.2e-17  Score=129.90  Aligned_cols=119  Identities=22%  Similarity=0.281  Sum_probs=85.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeE--EEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--FLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      .+..+|+++|..++|||||+++|.+..+.....++.+.+  .+...+...+....+++|||||+..|..++...+..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            456899999999999999999999876654333333222  222223333445789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||+.+....+....+. .+    ..   .++|+++|+||+|+.+.
T Consensus       322 aILVVDA~dGv~~QT~E~I~-~~----k~---~~iPiIVViNKiDl~~~  362 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAIN-YI----QA---ANVPIIVAINKIDKANA  362 (742)
T ss_pred             EEEEEECcCCCChhhHHHHH-HH----Hh---cCceEEEEEECCCcccc
Confidence            99999998854333222211 11    11   27899999999999864

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.74  E-value=4.3e-17  Score=123.39  Aligned_cols=123  Identities=20%  Similarity=0.124  Sum_probs=80.6

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cchhhhheec
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRG   80 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~   80 (156)
                      ...|+++|.+++|||||+++|.+.+..-...+..+.......+.+.+  ..|.+||+||....       .......++.
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            36799999999999999999998764322222222333344455555  67999999995321       1122334577


Q ss_pred             ccEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCC-------CCCCCcEEEEEecCCCCCC
Q 031598           81 ADCCVLVYDVNSM----KSFDNLNNWREEFLIQASPS-------DPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        81 ~~~~l~v~d~~~~----~~~~~~~~~~~~~~~~~~~~-------~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++++|+|+++.    +.+..+..+..++..+....       ...+.|+++|+||+|+.+.
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da  299 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA  299 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh
Confidence            9999999999863    34455555555555443210       1226799999999999754

>cd04163 Era Era subfamily

Probab=99.73  E-value=6.1e-17  Score=106.66  Aligned_cols=116  Identities=21%  Similarity=0.155  Sum_probs=73.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------hhhhhe
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFY   78 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~   78 (156)
                      ...+|+++|++|+|||||++++.+.+........... ..............+.+|||||......        .....+
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTT-RNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCce-eceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            3578999999999999999999987653222111111 1111111223346799999999654322        233456


Q ss_pred             ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        79 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      ..+|++++|+|..++.+.. ...+...+...       +.|+++|+||+|+..
T Consensus        81 ~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~-------~~~~iiv~nK~Dl~~  125 (168)
T cd04163          81 KDVDLVLFVVDASEPIGEG-DEFILELLKKS-------KTPVILVLNKIDLVK  125 (168)
T ss_pred             HhCCEEEEEEECCCccCch-HHHHHHHHHHh-------CCCEEEEEEchhccc
Confidence            7899999999999872211 12222222211       579999999999984

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.73  E-value=6.1e-17  Score=125.73  Aligned_cols=111  Identities=23%  Similarity=0.296  Sum_probs=82.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC---CCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      +.|+++|..++|||||+++|.+..   ++.+..++.+.+.....+..++  ..+.+||+||++.|.......+..+|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            368999999999999999999643   3333444555555555565555  78999999999999888888889999999


Q ss_pred             EEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598           86 LVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~  132 (156)
                      +|+|+++.   .+++.+    . +....      ++| +++|+||+|+.++
T Consensus        79 LVVDa~~G~~~qT~ehl----~-il~~l------gi~~iIVVlNK~Dlv~~  118 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL----A-VLDLL------GIPHTIVVITKADRVNE  118 (581)
T ss_pred             EEEECCCCCcHHHHHHH----H-HHHHc------CCCeEEEEEECCCCCCH
Confidence            99999984   333222    1 12221      567 9999999999865

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.73  E-value=1.5e-17  Score=112.55  Aligned_cols=118  Identities=22%  Similarity=0.256  Sum_probs=80.2

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCC------------------CCCceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQ------------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (156)
                      +.++|+++|+.++|||||+.+|........                  .....+.......+........++++||||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            568999999999999999999984431100                  01111122223333312344789999999999


Q ss_pred             cccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        69 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+.......+..+|++++|+|+.+....... +.+..+. ..      ++|+++|+||+|+...
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~~l~~~~-~~------~~p~ivvlNK~D~~~~  137 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE-EHLKILR-EL------GIPIIVVLNKMDLIEK  137 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH-HHHHHHH-HT------T-SEEEEEETCTSSHH
T ss_pred             ceeecccceecccccceeeeecccccccccc-ccccccc-cc------ccceEEeeeeccchhh
Confidence            9988888889999999999999976443322 2222221 11      7799999999999943

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK00089 era GTPase Era; Reviewed

Probab=99.73  E-value=7.5e-17  Score=116.16  Aligned_cols=117  Identities=20%  Similarity=0.187  Sum_probs=73.7

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc--------chhhhh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAF   77 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~   77 (156)
                      .+...|+++|.+|+|||||+|+|.+.+.........++........ .....++.++||||.....        ......
T Consensus         3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~-~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIV-TEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEE-EcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            3557799999999999999999998875432221111111111111 1223689999999954332        223345


Q ss_pred             eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      +..+|++++|+|++++..-. .......+    ...   +.|+++|+||+|+..
T Consensus        82 ~~~~D~il~vvd~~~~~~~~-~~~i~~~l----~~~---~~pvilVlNKiDl~~  127 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIGPG-DEFILEKL----KKV---KTPVILVLNKIDLVK  127 (292)
T ss_pred             HhcCCEEEEEEeCCCCCChh-HHHHHHHH----hhc---CCCEEEEEECCcCCC
Confidence            67899999999999832211 11222222    211   679999999999984

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.73  E-value=4.8e-17  Score=126.59  Aligned_cols=119  Identities=18%  Similarity=0.291  Sum_probs=84.7

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCC--CCC-----CC------CCceeeEEEEEE--EEE---CCeEEEEEEEeCCCc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKK--FSN-----QY------KATIGADFLTKE--VQF---EDRLFTLQIWDTAGQ   67 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~-----~~------~~~~~~~~~~~~--~~~---~~~~~~~~i~D~~g~   67 (156)
                      .+.++|+++|..++|||||+.+|+...  ...     ..      ....+.+.....  +.+   ++..+.+++|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            456899999999999999999998531  100     00      011122222221  222   445689999999999


Q ss_pred             ccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        68 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .++...+..+++.+|++++|+|+++....+....|....    .    .++|+++|+||+|+.+.
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~----~~lpiIvViNKiDl~~a  141 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----E----NDLEIIPVLNKIDLPAA  141 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----H----CCCCEEEEEECCCCCcc
Confidence            999999999999999999999999876655554444322    1    16799999999999754

>PRK10218 GTP-binding protein; Provisional

Probab=99.73  E-value=1.1e-16  Score=124.30  Aligned_cols=118  Identities=20%  Similarity=0.269  Sum_probs=87.0

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC--CCCCC------------CCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK--KFSNQ------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS   72 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   72 (156)
                      ...+|+++|..++|||||+++|+..  .+...            .....+.+.......+....+.+++|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            4689999999999999999999862  22111            123344555555555556668999999999999999


Q ss_pred             hhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        73 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+..+++.+|++++|||+.+....+. ..++.....    .   ++|.++|+||+|+...
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~----~---gip~IVviNKiD~~~a  135 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA----Y---GLKPIVVINKVDRPGA  135 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH----c---CCCEEEEEECcCCCCC
Confidence            99999999999999999987543332 222222221    1   7799999999999865

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.73  E-value=9.4e-17  Score=113.86  Aligned_cols=123  Identities=20%  Similarity=0.231  Sum_probs=90.6

Q ss_pred             CcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccch
Q 031598            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSL   73 (156)
Q Consensus         2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~   73 (156)
                      |.-+.....|+|.|.|++|||||++++.+.+..-.+.|..+.......+..++  .+++++||||--        ..+..
T Consensus       162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~q  239 (346)
T COG1084         162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQ  239 (346)
T ss_pred             CCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHH
Confidence            45566778999999999999999999999987655556655566666665555  689999999921        11222


Q ss_pred             hhhhe-ecccEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           74 GVAFY-RGADCCVLVYDVNSM--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        74 ~~~~~-~~~~~~l~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ....+ .-.++++|+||.+..  -+.+....++..+...+      +.|+++|.||+|+.+.
T Consensus       240 Ai~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f------~~p~v~V~nK~D~~~~  295 (346)
T COG1084         240 AILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF------KAPIVVVINKIDIADE  295 (346)
T ss_pred             HHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc------CCCeEEEEecccccch
Confidence            22233 336899999999974  35666677777777666      4699999999999854

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.73  E-value=7.3e-17  Score=121.83  Aligned_cols=113  Identities=20%  Similarity=0.242  Sum_probs=77.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCc--------ccccchhhhheec
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ--------ERFQSLGVAFYRG   80 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~~~~~~   80 (156)
                      +|+++|.+++|||||+++|.+..... ...+..+.+.........+  ..+.+|||||.        ..+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            48999999999999999999876321 1223333344444455555  56999999995        3334455567789


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|++++|+|..++.+... ..+...+.+    .   +.|+++|+||+|+.+.
T Consensus        79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~----~---~~piilVvNK~D~~~~  122 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED-EEIAKWLRK----S---GKPVILVANKIDGKKE  122 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHH----h---CCCEEEEEECccCCcc
Confidence            999999999987544332 122222221    1   6799999999999865

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.72  E-value=8.7e-17  Score=109.29  Aligned_cols=116  Identities=25%  Similarity=0.239  Sum_probs=75.1

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCc----------ccccchhh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----------ERFQSLGV   75 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~   75 (156)
                      ...++|+++|.+|+|||||+++|.+.++.....++.+.+........   ...+.+|||||.          ..+.....
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~   98 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE   98 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence            45689999999999999999999987644344444444433333322   257999999994          23333334


Q ss_pred             hheec---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           76 AFYRG---ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        76 ~~~~~---~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+++.   .+++++++|..++......  +...+...      .+.|+++++||+|+.+.
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~------~~~~~iiv~nK~Dl~~~  150 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE------YGIPVLIVLTKADKLKK  150 (196)
T ss_pred             HHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH------cCCcEEEEEECcccCCH
Confidence            44443   4678888998876443321  11122211      16799999999999765

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.72  E-value=1.5e-16  Score=118.20  Aligned_cols=121  Identities=15%  Similarity=0.036  Sum_probs=81.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------chhhhheecc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFYRGA   81 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~   81 (156)
                      ..|+++|.+++|||||+++|.+.+......+..+.......+.+.+ ...+.++||||...-.       ......++.+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            4789999999999999999998764322222222223333344332 2368999999954321       1122356789


Q ss_pred             cEEEEEEECC---ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           82 DCCVLVYDVN---SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        82 ~~~l~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++++|+|++   +.+.++....|...+..+...  ..+.|+++|+||+|+...
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~--L~~kP~IlVlNKiDl~~~  290 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPK--LAEKPRWLVFNKIDLLDE  290 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhh--hcCCCEEEEEeCCccCCh
Confidence            9999999988   455666667777776654321  125799999999999754

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.72  E-value=4.7e-17  Score=122.44  Aligned_cols=125  Identities=22%  Similarity=0.325  Sum_probs=96.8

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      -...+||+++|+.|+||||||..+....+.+.-.+-...-.....++.  ..+..+|+|++...+-+......++.+|++
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtP--e~vpt~ivD~ss~~~~~~~l~~EirkA~vi   83 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTP--ENVPTSIVDTSSDSDDRLCLRKEIRKADVI   83 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCc--CcCceEEEecccccchhHHHHHHHhhcCEE
Confidence            345699999999999999999999999887654444433222233322  335589999998777677778889999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      +++|+++++.+.+.+. .|+..+++....  ..++|+|+||||+|+.+..
T Consensus        84 ~lvyavd~~~T~D~ist~WLPlir~~~~~--~~~~PVILvGNK~d~~~~~  131 (625)
T KOG1707|consen   84 CLVYAVDDESTVDRISTKWLPLIRQLFGD--YHETPVILVGNKSDNGDNE  131 (625)
T ss_pred             EEEEecCChHHhhhhhhhhhhhhhcccCC--CccCCEEEEeeccCCcccc
Confidence            9999999999999984 688877765532  2388999999999998873

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.71  E-value=2.7e-16  Score=118.73  Aligned_cols=115  Identities=23%  Similarity=0.239  Sum_probs=78.2

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch-----------
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-----------   73 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------   73 (156)
                      ...++|+++|.+++|||||+++|++.+.. ....+..+.+.....+..++  ..+.+|||||.......           
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence            34589999999999999999999987532 11222222333333444444  47899999996543322           


Q ss_pred             hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        74 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      ....++.+|++++|+|++++.+..... +...+.    ..   +.|+++|+||+|+.
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~----~~---~~~iiiv~NK~Dl~  296 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLIL----EA---GKALVIVVNKWDLV  296 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHH----Hc---CCcEEEEEECcccC
Confidence            123578899999999999887665542 222221    11   67999999999998

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.71  E-value=6.8e-17  Score=121.80  Aligned_cols=123  Identities=17%  Similarity=0.164  Sum_probs=79.2

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCC-----------------------------CCCCceeeEEEEEEEEECCe
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSN-----------------------------QYKATIGADFLTKEVQFEDR   55 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   55 (156)
                      .++.++|+++|..++|||||+++|+...-.-                             ......+.+.......+...
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            4566999999999999999999998332100                             00011223333333334445


Q ss_pred             EEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+.+++|||||+..+.......+..+|++++|+|++++..+.....+...+.....     ..|+++|+||+|+.+.
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-----~~~iivviNK~Dl~~~  154 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-----INQLIVAINKMDAVNY  154 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-----CCeEEEEEEccccccc
Confidence            57899999999988766555667889999999999973222221222222222221     2369999999999763

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.71  E-value=1.5e-16  Score=123.14  Aligned_cols=114  Identities=29%  Similarity=0.324  Sum_probs=77.8

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCce----eeEEEEEEEE------------ECCeEEEEEEEeCCCcccc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI----GADFLTKEVQ------------FEDRLFTLQIWDTAGQERF   70 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~----~~~~~~~~~~------------~~~~~~~~~i~D~~g~~~~   70 (156)
                      +..-|+++|.+++|||||+++|.+..+......+.    +.........            ++.....+.+|||||++.+
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            34568999999999999999999876643322211    2211111100            0000013889999999999


Q ss_pred             cchhhhheecccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           71 QSLGVAFYRGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        71 ~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      ..++...++.+|++++|||+++   +.+++.+.    .+.    ..   +.|+++|+||+|+..
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~----~~---~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR----MY---KTPFVVAANKIDRIP  135 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH----Hc---CCCEEEEEECCCccc
Confidence            9988889999999999999997   34433332    111    11   679999999999974

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.70  E-value=1.3e-16  Score=123.94  Aligned_cols=116  Identities=20%  Similarity=0.213  Sum_probs=82.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC--CCCCC------------CCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchh
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK--KFSNQ------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG   74 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   74 (156)
                      ++|+++|..++|||||+.+|+..  .+...            .....+.+.......+...++.+++|||||+.+|...+
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            68999999999999999999853  11111            01122333333333334445889999999999999899


Q ss_pred             hhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        75 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ...++.+|++++|+|+.+... .....++..+..    .   ++|+++|+||+|+.+.
T Consensus        82 ~~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~----~---~ip~IVviNKiD~~~a  131 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGPM-PQTRFVLKKALE----L---GLKPIVVINKIDRPSA  131 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHH----C---CCCEEEEEECCCCCCc
Confidence            999999999999999987432 223344444332    1   7799999999999765

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.70  E-value=8.9e-17  Score=121.18  Aligned_cols=120  Identities=18%  Similarity=0.183  Sum_probs=80.4

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCC--CC-----------------------------CCCCCceeeEEEEEEEEEC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--FS-----------------------------NQYKATIGADFLTKEVQFE   53 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~   53 (156)
                      .+..++|+++|..++|||||+.+|+...  ..                             .+.....+.+...  ..+.
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~--~~~~   81 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH--WKFE   81 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEE--EEEc
Confidence            5667999999999999999999997421  10                             1112233333333  3344


Q ss_pred             CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      .....+++|||||++.+.......+..+|++++|||+++.+++.... .+...+.....     ..|+++|+||+|+.+
T Consensus        82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-----~~~iIVviNK~Dl~~  155 (426)
T TIGR00483        82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-----INQLIVAINKMDSVN  155 (426)
T ss_pred             cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-----CCeEEEEEEChhccC
Confidence            44578999999999888766666778899999999999875331111 11112222222     347999999999975

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.70  E-value=1.6e-16  Score=108.76  Aligned_cols=118  Identities=13%  Similarity=0.101  Sum_probs=72.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCC---CCCCCCceeeEEEEEEEEEC---------------------------C----
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTKEVQFE---------------------------D----   54 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~----   54 (156)
                      ++|+++|+.|+|||||+..+.+...   ........+.......+...                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4789999999999999999975521   11111111111110011100                           0    


Q ss_pred             eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ....+++|||||++.+...+...+..+|++++|+|+.++.........+..+. ...     ..|+++|+||+|+.++
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~-~~~-----~~~iiivvNK~Dl~~~  152 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALE-IMG-----LKHIIIVQNKIDLVKE  152 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHH-HcC-----CCcEEEEEEchhccCH
Confidence            12679999999999888777788888999999999997421111111122221 111     2479999999999764

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.70  E-value=4.4e-16  Score=97.52  Aligned_cols=106  Identities=21%  Similarity=0.307  Sum_probs=67.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cchhhhhee
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVAFYR   79 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~   79 (156)
                      +|+++|.+|+|||||+++|.+.+... ...+..+.......+.+++.  .+.++||||-...         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            68999999999999999999864321 11122222223344556664  5679999994321         112233347


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 031598           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK  126 (156)
Q Consensus        80 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK  126 (156)
                      .+|++++|+|.+++.. +.....++.+    +    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l----~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILREL----K----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHH----H----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHH----h----cCCCEEEEEcC
Confidence            8999999999877322 2223333333    1    17799999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.70  E-value=7.7e-16  Score=107.43  Aligned_cols=83  Identities=20%  Similarity=0.257  Sum_probs=58.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------chhhhheeccc
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFYRGAD   82 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~   82 (156)
                      +|+++|.+++|||||+++|.+........+..+.+.....+.+++  ..+++||+||.....       ......++.+|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            689999999999999999998764322222222233344445555  679999999964332       22345678999


Q ss_pred             EEEEEEECCChh
Q 031598           83 CCVLVYDVNSMK   94 (156)
Q Consensus        83 ~~l~v~d~~~~~   94 (156)
                      ++++|+|++++.
T Consensus        80 ~il~V~D~t~~~   91 (233)
T cd01896          80 LILMVLDATKPE   91 (233)
T ss_pred             EEEEEecCCcch
Confidence            999999998765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01850 CDC_Septin CDC/Septin

Probab=99.70  E-value=5.9e-16  Score=110.41  Aligned_cols=117  Identities=18%  Similarity=0.253  Sum_probs=74.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCC----------CCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-----
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQ----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----   72 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----   72 (156)
                      .++|+++|.+|+|||||+++|++......          ..++.........+..++..+.+++|||||-.....     
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            58999999999999999999998876433          233333334444455567778999999999322110     


Q ss_pred             ---------------------hhhhhee--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598           73 ---------------------LGVAFYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (156)
Q Consensus        73 ---------------------~~~~~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  129 (156)
                                           .....+.  .+|+++++++.+...    +..+...+...+..    ++|+++|+||+|+
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~----l~~~D~~~lk~l~~----~v~vi~VinK~D~  155 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG----LKPLDIEFMKRLSK----RVNIIPVIAKADT  155 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC----CCHHHHHHHHHHhc----cCCEEEEEECCCc
Confidence                                 0101222  468888888877522    11221222222222    5799999999999


Q ss_pred             CCC
Q 031598          130 DGG  132 (156)
Q Consensus       130 ~~~  132 (156)
                      ..+
T Consensus       156 l~~  158 (276)
T cd01850         156 LTP  158 (276)
T ss_pred             CCH
Confidence            764

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.70  E-value=5.1e-16  Score=101.69  Aligned_cols=119  Identities=24%  Similarity=0.360  Sum_probs=86.0

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCC--------CC----CceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ--------YK----ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (156)
                      ......||+|.|+.++||||+++.+........        +.    .+...++..  +.+. .++.+++++||||+.+.
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~--~~~~-~~~~v~LfgtPGq~RF~   82 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--IELD-EDTGVHLFGTPGQERFK   82 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc--eEEc-CcceEEEecCCCcHHHH
Confidence            345678999999999999999999987653111        11    111122211  2222 23689999999999999


Q ss_pred             chhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        72 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+|....+.+.++++++|.+.+..+. ....+..+... .     .+|+++.+||.||.+.
T Consensus        83 fm~~~l~~ga~gaivlVDss~~~~~~-a~~ii~f~~~~-~-----~ip~vVa~NK~DL~~a  136 (187)
T COG2229          83 FMWEILSRGAVGAIVLVDSSRPITFH-AEEIIDFLTSR-N-----PIPVVVAINKQDLFDA  136 (187)
T ss_pred             HHHHHHhCCcceEEEEEecCCCcchH-HHHHHHHHhhc-c-----CCCEEEEeeccccCCC
Confidence            99999999999999999999998873 23333333221 1     2899999999999976

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.69  E-value=4.1e-16  Score=121.07  Aligned_cols=115  Identities=30%  Similarity=0.377  Sum_probs=77.6

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCc----eeeEEEEEEEE--ECCeE-----E-----EEEEEeCCCcc
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT----IGADFLTKEVQ--FEDRL-----F-----TLQIWDTAGQE   68 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~g~~   68 (156)
                      ..+...|+++|.+++|||||+++|.+..........    .+.+.......  ..+..     .     .+++|||||++
T Consensus         3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e   82 (586)
T PRK04004          3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE   82 (586)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence            345678999999999999999999876543322221    11111111000  00110     1     27899999999


Q ss_pred             cccchhhhheecccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           69 RFQSLGVAFYRGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        69 ~~~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      .|..++...++.+|++++|||+++   +.++..+..    +. .      .+.|+++++||+|+.
T Consensus        83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~-~------~~vpiIvviNK~D~~  136 (586)
T PRK04004         83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK-R------RKTPFVVAANKIDRI  136 (586)
T ss_pred             HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH-H------cCCCEEEEEECcCCc
Confidence            999888888899999999999997   444443321    11 1      178999999999986

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=7.6e-16  Score=109.50  Aligned_cols=113  Identities=19%  Similarity=0.162  Sum_probs=77.2

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCC------------------CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKF------------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (156)
                      +|+++|.+++|||||+++|+...-                  +.......+.+.....+..  ..++++++||||+..+.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--KDHRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--CCEEEEEEECCCcHHHH
Confidence            589999999999999999963210                  0111222222222333333  34789999999998888


Q ss_pred             chhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        72 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+...++.+|++++|+|+.+...-+. ...+..+.    ..   ++|+++|+||+|+.+.
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~----~~---~~p~ivviNK~D~~~a  131 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQAD----RY---NVPRIAFVNKMDRTGA  131 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHH----Hc---CCCEEEEEECCCCCCC
Confidence            888899999999999999987543222 22222221    11   6799999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG1159 Era GTPase [General function prediction only]

Probab=99.69  E-value=1.8e-16  Score=111.37  Aligned_cols=119  Identities=19%  Similarity=0.165  Sum_probs=78.3

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccchhhhh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVAF   77 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~   77 (156)
                      .+..-|+++|.|++|||||+|++.+.+..-......++......+. .....++.++||||--        .+.......
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~-t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s   82 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIV-TTDNAQIIFVDTPGIHKPKHALGELMNKAARSA   82 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEE-EcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence            4557789999999999999999999986533322222222222222 2235799999999932        222333345


Q ss_pred             eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      +..+|++++|+|+..+..-.. ....+.+..       .+.|+++++||+|....+
T Consensus        83 l~dvDlilfvvd~~~~~~~~d-~~il~~lk~-------~~~pvil~iNKID~~~~~  130 (298)
T COG1159          83 LKDVDLILFVVDADEGWGPGD-EFILEQLKK-------TKTPVILVVNKIDKVKPK  130 (298)
T ss_pred             hccCcEEEEEEeccccCCccH-HHHHHHHhh-------cCCCeEEEEEccccCCcH
Confidence            678999999999998543211 112222221       167999999999998763

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.69  E-value=3.3e-16  Score=107.64  Aligned_cols=114  Identities=20%  Similarity=0.145  Sum_probs=73.0

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCC-------------------------------CCCCceeeEEEEEEEEECCeEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSN-------------------------------QYKATIGADFLTKEVQFEDRLFT   58 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   58 (156)
                      ||+++|.+++|||||+++|+...-.-                               ...+..+.+.....+.  .....
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~--~~~~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFS--TPKRK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEe--cCCce
Confidence            58999999999999999997432110                               0012222222222333  33467


Q ss_pred             EEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        59 ~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +.+|||||+..+.......++.+|++++|+|++++..-.. .... .+.....     ..++++|+||+|+...
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~-~~~~~~~-----~~~iIvviNK~D~~~~  145 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHS-YILSLLG-----IRHVVVAVNKMDLVDY  145 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHH-HHHHHcC-----CCcEEEEEEchhcccC
Confidence            8999999998876666677889999999999987632121 1111 1222221     2357889999999753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.69  E-value=1.4e-16  Score=122.32  Aligned_cols=121  Identities=20%  Similarity=0.232  Sum_probs=81.7

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCC--CC---CC---------------CCCceeeEEEEEEEEECCeEEEEEEEeC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--FS---NQ---------------YKATIGADFLTKEVQFEDRLFTLQIWDT   64 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~---~~---------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~   64 (156)
                      ..+.++|+++|..++|||||+++|+...  ..   ..               .....+.+.......+....+.+++|||
T Consensus         7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT   86 (526)
T PRK00741          7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT   86 (526)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence            3467899999999999999999996311  00   00               0001122222333333344588999999


Q ss_pred             CCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        65 ~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      ||+.++.......++.+|++++|+|+.+..... ...++..    +...   ++|+++++||+|+...+
T Consensus        87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~----~~~~---~iPiiv~iNK~D~~~a~  147 (526)
T PRK00741         87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEV----CRLR---DTPIFTFINKLDRDGRE  147 (526)
T ss_pred             CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHH----HHhc---CCCEEEEEECCcccccC
Confidence            999999887888899999999999998753222 2222222    2222   78999999999998753

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.69  E-value=7.8e-17  Score=111.53  Aligned_cols=129  Identities=19%  Similarity=0.304  Sum_probs=78.0

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEeCCCcccccc-----hhhhheecccE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQS-----LGVAFYRGADC   83 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~~~   83 (156)
                      ||+++|+.+|||||+.+.++..-.+.+ ....+.+.......+ ......+++||+||+..+..     .....++.+++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999998888886643322 233333332333333 12236899999999875543     34567799999


Q ss_pred             EEEEEECCChhhHHHHH---HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccc
Q 031598           84 CVLVYDVNSMKSFDNLN---NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGS  144 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~  144 (156)
                      +|+|||+.+.+-.+++.   ..+..+.++..     ++.+.++++|+|+..++.++....+..+
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-----~~~v~vfiHK~D~l~~~~r~~~~~~~~~  138 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-----NIKVFVFIHKMDLLSEDEREEIFRDIQQ  138 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHST-----T-EEEEEEE-CCCS-HHHHHHHHHHHHH
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-----CCeEEEEEeecccCCHHHHHHHHHHHHH
Confidence            99999999544333333   33444444333     7889999999999876555555544433

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.69  E-value=2.7e-17  Score=109.45  Aligned_cols=120  Identities=22%  Similarity=0.287  Sum_probs=75.0

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEeCCCcccccchhhhh---eecccE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAF---YRGADC   83 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~---~~~~~~   83 (156)
                      ...|+++|++|+|||+|..+|.+....++.... ..   .....+ ....-.+.++|+||+...+......   +..+.+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~---n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-EN---NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S-SE---EEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cC---CceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            457899999999999999999988644322222 11   111111 1223468999999999988766655   788999


Q ss_pred             EEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNS-MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++||+|.+. .....++.+++-.++...... ...+|+++++||.|+...
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT-
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCcccccc
Confidence            999999985 444555555555555433322 337899999999999875

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=3e-16  Score=111.77  Aligned_cols=113  Identities=21%  Similarity=0.293  Sum_probs=77.0

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCC------------------CCceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQY------------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (156)
                      +|+++|.+|+|||||+++++...-....                  ....+.......+..+  .+.+++|||||+..+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence            5899999999999999999743211000                  0011111112223333  4789999999998887


Q ss_pred             chhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        72 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+...++.+|++++|+|+++.........| ..+.    ..   +.|+++|+||+|+...
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~----~~---~~p~iivvNK~D~~~~  131 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFAD----EA---GIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHH----Hc---CCCEEEEEECCccCCC
Confidence            7888899999999999999987554433222 2221    11   6799999999999865

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.69  E-value=5.5e-16  Score=123.33  Aligned_cols=113  Identities=21%  Similarity=0.273  Sum_probs=78.2

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch----------hhhh
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------GVAF   77 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~   77 (156)
                      .++|+++|.++||||||+|++.+.+...  .+..+.+.......+...+..++++||||...+...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~v--gn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRV--GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            4789999999999999999999876532  333444444444444445578999999997765421          1122


Q ss_pred             e--ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           78 Y--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        78 ~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +  ..+|++++|+|.++.+.-.   .+..++.+    .   +.|+++|+||+|+.++
T Consensus        81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e----~---giPvIvVlNK~Dl~~~  127 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERNL---YLTLQLLE----L---GIPCIVALNMLDIAEK  127 (772)
T ss_pred             HhccCCCEEEEEecCCcchhhH---HHHHHHHH----c---CCCEEEEEEchhhhhc
Confidence            2  4789999999999865422   23333322    1   7899999999999754

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.68  E-value=4.7e-16  Score=123.60  Aligned_cols=116  Identities=24%  Similarity=0.281  Sum_probs=80.1

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccch-h
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSL-G   74 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~   74 (156)
                      ..++|+++|.+++|||||+++|.+.+.. ....+..+.+.....+.+++.  .+.+|||||...          +... .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            4589999999999999999999988642 122333334444445556664  567999999531          1111 1


Q ss_pred             hhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        75 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ...++.+|++++|+|+++..+.+.... +..+..       .+.|+++|+||+|+.++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~-------~~~piIiV~NK~DL~~~  576 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD-------AGRALVLVFNKWDLMDE  576 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH-------cCCCEEEEEEchhcCCh
Confidence            234688999999999999877776543 232321       16799999999999764

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.68  E-value=1.3e-15  Score=115.23  Aligned_cols=117  Identities=23%  Similarity=0.245  Sum_probs=78.2

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch-----------
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-----------   73 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------   73 (156)
                      ...++|+++|.+++|||||+++|++... .....+..+.+.....+..++  ..+.+|||||.......           
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            3469999999999999999999997653 222233333333333444444  56889999995432111           


Q ss_pred             hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        74 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ...+++.+|++++|+|+.++.+.+... +...+.    ..   +.|+++|+||+|+.++
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~----~~---~~~~ivv~NK~Dl~~~  299 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLAL----EA---GRALVIVVNKWDLVDE  299 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHH----Hc---CCcEEEEEECccCCCH
Confidence            123567899999999999887655542 222221    11   6799999999999854

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.68  E-value=9.2e-16  Score=121.94  Aligned_cols=116  Identities=22%  Similarity=0.242  Sum_probs=77.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc--------ccchhhhh
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAF   77 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~   77 (156)
                      ...+|+++|.+++|||||+++|.+.+... ...++.+.+.........+  ..+.+|||||.+.        +......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            35789999999999999999999875321 2233333343333333444  5789999999653        23334456


Q ss_pred             eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++.+|++++|+|+++...... ..+...+..       .+.|+++|+||+|+.+.
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-------~~~pvIlV~NK~D~~~~  398 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR-------AGKPVVLAVNKIDDQAS  398 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh-------cCCCEEEEEECcccccc
Confidence            789999999999987432111 233333321       17899999999998653

>cd00880 Era_like Era (E

Probab=99.68  E-value=5e-16  Score=101.31  Aligned_cols=111  Identities=20%  Similarity=0.220  Sum_probs=74.6

Q ss_pred             EEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-------hhhhheecccEE
Q 031598           13 ILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LGVAFYRGADCC   84 (156)
Q Consensus        13 v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~~~   84 (156)
                      ++|++|+|||||++++.+.... .................... ...+.+||+||......       .....++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987544 22222222222222222221 35899999999765543       334477889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|+|.++........ +.....   .    .+.|+++|+||+|+..+
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~----~~~~~ivv~nK~D~~~~  119 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---E----RGKPVLLVLNKIDLLPE  119 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---h----cCCeEEEEEEccccCCh
Confidence            9999999987665543 222221   1    17899999999999876

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.68  E-value=9e-16  Score=104.33  Aligned_cols=117  Identities=18%  Similarity=0.116  Sum_probs=77.8

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCC--------------CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFS--------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL   73 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   73 (156)
                      .++|+++|..++|||||+++|+.....              .......+.+.......+.....++.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            479999999999999999999753100              000112223333333444455578999999999888777


Q ss_pred             hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598           74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG  132 (156)
Q Consensus        74 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~  132 (156)
                      ....+..+|++++|+|+.....-+. ...+..+.    ..   +.| +++|+||+|+..+
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~----~~---~~~~iIvviNK~D~~~~  133 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQT-REHLLLAR----QV---GVPYIVVFLNKADMVDD  133 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHH----Hc---CCCcEEEEEeCCCCCCc
Confidence            7788889999999999987532221 12222221    11   556 7899999999743

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.68  E-value=4.1e-16  Score=119.71  Aligned_cols=120  Identities=20%  Similarity=0.208  Sum_probs=81.9

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcC-CCCC----C---------------CCCceeeEEEEEEEEECCeEEEEEEEeC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNK-KFSN----Q---------------YKATIGADFLTKEVQFEDRLFTLQIWDT   64 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~-~~~~----~---------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~   64 (156)
                      ..+.++|+++|.+++|||||+++|+.. ....    .               .....+.+.......++...+.+++|||
T Consensus         8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT   87 (527)
T TIGR00503         8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT   87 (527)
T ss_pred             hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence            356789999999999999999998531 1100    0               0011123333334444555689999999


Q ss_pred             CCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        65 ~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||+..+.......++.+|++++|+|+.+...-. ...+++..    ...   ++|+++|+||+|+...
T Consensus        88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~----~~~---~~PiivviNKiD~~~~  147 (527)
T TIGR00503        88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR-TRKLMEVT----RLR---DTPIFTFMNKLDRDIR  147 (527)
T ss_pred             CChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHH----Hhc---CCCEEEEEECccccCC
Confidence            999888877777889999999999998752211 22333322    111   7899999999999754

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.67  E-value=1.4e-15  Score=103.73  Aligned_cols=112  Identities=17%  Similarity=0.278  Sum_probs=66.6

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceee---EEEEEEEEECCeEEEEEEEeCCCcccccchhhhh-----ee
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA---DFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF-----YR   79 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~   79 (156)
                      .++|+++|.+|+|||||+|.+.+...........+.   +.....+... ....+.+|||||..........+     +.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            378999999999999999999986543322221111   1111111111 12368999999965432222222     56


Q ss_pred             cccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           80 GADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        80 ~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      .+|+++++.+. .   +... ..+++.+...       +.|+++|+||+|+..
T Consensus        80 ~~d~~l~v~~~-~---~~~~d~~~~~~l~~~-------~~~~ilV~nK~D~~~  121 (197)
T cd04104          80 EYDFFIIISST-R---FSSNDVKLAKAIQCM-------GKKFYFVRTKVDRDL  121 (197)
T ss_pred             CcCEEEEEeCC-C---CCHHHHHHHHHHHHh-------CCCEEEEEecccchh
Confidence            78888887432 2   2322 2344444321       568999999999954

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.4e-16  Score=103.25  Aligned_cols=120  Identities=24%  Similarity=0.379  Sum_probs=91.1

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCC---C----CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhhe
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKF---S----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFY   78 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   78 (156)
                      +..+.++++|..++|||||+........   .    ..-.++.+  .....+...+  ..+.+||..|++..+++|..++
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY   90 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVCN--APLSFWDLGGQESLRSLWKKYY   90 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeecc--ceeEEEEcCChHHHHHHHHHHH
Confidence            3458899999999999999998764321   1    11122332  3333344443  5799999999999999999999


Q ss_pred             ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        79 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+++++++||+.+++.|+.....++.+..   .....+.|+++.+||.|+.+.
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~---~E~leg~p~L~lankqd~q~~  141 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVE---NEKLEGAPVLVLANKQDLQNA  141 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHH---HHHhcCCchhhhcchhhhhhh
Confidence            999999999999999999988666655542   223338999999999999875

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.66  E-value=1.1e-15  Score=105.76  Aligned_cols=116  Identities=18%  Similarity=0.206  Sum_probs=73.1

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCC--C---------------------------CCCCCceeeEEEEEEEEECCeEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKF--S---------------------------NQYKATIGADFLTKEVQFEDRLFTLQ   60 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~   60 (156)
                      +|+++|..++|||||+.+|+...-  .                           .......+.+.......+......++
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            589999999999999999863210  0                           00011111222222233333447899


Q ss_pred             EEeCCCcccccchhhhheecccEEEEEEECCChhh---HH---HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---FD---NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        61 i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      +|||||+..+...+...++.+|++++|+|+++...   +.   ....... +.....     ..|+++|+||+|+..
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~iiivvNK~Dl~~  151 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTLG-----VKQLIVAVNKMDDVT  151 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHcC-----CCeEEEEEEcccccc
Confidence            99999998887777777888999999999998521   11   1111111 111111     358999999999984

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.65  E-value=3.4e-19  Score=116.54  Aligned_cols=126  Identities=38%  Similarity=0.737  Sum_probs=110.8

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeE-EEEEEEeCCCcccccchhhhheecccEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      -..+++|+|.-|+|||+++.+...+.+...+..+.+.+.......-+... +++++||..|++.+..+...+++.+++..
T Consensus        24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~  103 (229)
T KOG4423|consen   24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF  103 (229)
T ss_pred             hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence            35899999999999999999999888888888888877666665544433 58899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++..|+.+..|.+.+..-+......-.|+++..||||+...
T Consensus       104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~  150 (229)
T KOG4423|consen  104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS  150 (229)
T ss_pred             EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChH
Confidence            99999999999999999999988777777777889999999999865

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.65  E-value=5.3e-16  Score=102.27  Aligned_cols=100  Identities=20%  Similarity=0.190  Sum_probs=66.2

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc----chhhhheecccEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----SLGVAFYRGADCCV   85 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~~~~~~~~~~~l   85 (156)
                      +|+++|.+++|||||++++.+....  ...+.       ...+...    .+|||||.....    ......+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--Cccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            7999999999999999998865421  11111       1122222    269999963222    12223468899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|+|+++..++.  ..|...+    .    .+.|+++++||+|+.+.
T Consensus        70 ~v~d~~~~~s~~--~~~~~~~----~----~~~~ii~v~nK~Dl~~~  106 (158)
T PRK15467         70 YVHGANDPESRL--PAGLLDI----G----VSKRQIAVISKTDMPDA  106 (158)
T ss_pred             EEEeCCCccccc--CHHHHhc----c----CCCCeEEEEEccccCcc
Confidence            999999887653  2333322    1    15699999999999754

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.65  E-value=3.2e-15  Score=98.65  Aligned_cols=110  Identities=25%  Similarity=0.336  Sum_probs=70.2

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccchhhhhee
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLGVAFYR   79 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~   79 (156)
                      .|+++|.+|+|||||++.+.+........++.+.+........+.   .+.+|||||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            379999999999999999996554444444444443333333332   789999999433          2222333333


Q ss_pred             ---cccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           80 ---GADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        80 ---~~~~~l~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                         ..+++++++|.....+..  .+..|+...          +.|+++|+||+|+...
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~----------~~~vi~v~nK~D~~~~  125 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL----------GIPFLVVLTKADKLKK  125 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc----------CCCEEEEEEchhcCCh
Confidence               357889999988653222  222333221          5799999999999754

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.64  E-value=1.5e-15  Score=118.19  Aligned_cols=106  Identities=17%  Similarity=0.238  Sum_probs=73.5

Q ss_pred             cCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch------hhhhe--ecccEEEE
Q 031598           15 GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY--RGADCCVL   86 (156)
Q Consensus        15 G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~l~   86 (156)
                      |.+++|||||+|++.+.+......++.+.+.....+.+++  ..+++|||||+..+...      ...++  +.+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998876444445555555555555555  46899999998776543      23333  46899999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |+|.++.+..   ..+..++.   .    .+.|+++|+||+|+.++
T Consensus        79 VvDat~ler~---l~l~~ql~---~----~~~PiIIVlNK~Dl~~~  114 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLL---E----LGIPMILALNLVDEAEK  114 (591)
T ss_pred             EecCCcchhh---HHHHHHHH---h----cCCCEEEEEehhHHHHh
Confidence            9999875421   22222222   1    16899999999999754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK13351 elongation factor G; Reviewed

Probab=99.64  E-value=1.5e-15  Score=120.45  Aligned_cols=115  Identities=21%  Similarity=0.224  Sum_probs=82.3

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCC-----C---------------CCCCceeeEEEEEEEEECCeEEEEEEEeCC
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-----N---------------QYKATIGADFLTKEVQFEDRLFTLQIWDTA   65 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-----~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   65 (156)
                      ...++|+++|..++|||||+++|+...-.     .               .+..+..  .....+..  ....+++||||
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~--~~~~~~~~--~~~~i~liDtP   81 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIE--SAATSCDW--DNHRINLIDTP   81 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcc--cceEEEEE--CCEEEEEEECC
Confidence            45689999999999999999999743100     0               0111111  11122333  34789999999


Q ss_pred             CcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        66 g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |+.++...+..+++.+|++++|+|+.+.........|. .+.    ..   ++|+++|+||+|+...
T Consensus        82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~----~~---~~p~iiviNK~D~~~~  140 (687)
T PRK13351         82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QAD----RY---GIPRLIFINKMDRVGA  140 (687)
T ss_pred             CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH----hc---CCCEEEEEECCCCCCC
Confidence            99999888899999999999999999876655443332 221    11   6799999999999875

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.64  E-value=4.7e-15  Score=99.08  Aligned_cols=116  Identities=26%  Similarity=0.311  Sum_probs=83.1

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC----------cccccchhhh
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGVA   76 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~~   76 (156)
                      ...-|+++|.+++|||||||+|.+++--.....++|.+.....+.+++.   +.++|.||          .+.+..+...
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~   99 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE   99 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence            4578999999999999999999997743444667777777777777663   78999999          4455556666


Q ss_pred             heec---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           77 FYRG---ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        77 ~~~~---~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      |++.   ..++++++|...+-.-.+. +.++ +.   ...   ++|+++|+||+|.....
T Consensus       100 YL~~R~~L~~vvlliD~r~~~~~~D~-em~~-~l---~~~---~i~~~vv~tK~DKi~~~  151 (200)
T COG0218         100 YLEKRANLKGVVLLIDARHPPKDLDR-EMIE-FL---LEL---GIPVIVVLTKADKLKKS  151 (200)
T ss_pred             HHhhchhheEEEEEEECCCCCcHHHH-HHHH-HH---HHc---CCCeEEEEEccccCChh
Confidence            6643   4788889998876432221 1122 22   212   88999999999998763

>PRK12735 elongation factor Tu; Reviewed

Probab=99.63  E-value=5.6e-15  Score=110.44  Aligned_cols=121  Identities=18%  Similarity=0.159  Sum_probs=79.0

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcC-------CC------C-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNK-------KF------S-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~-------~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (156)
                      ..++.++|+++|..++|||||+++|++.       ..      . .......+.+.......+.....++.++||||+..
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            3566799999999999999999999852       00      0 00111222333333344444456889999999988


Q ss_pred             ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEEecCCCCCC
Q 031598           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV-VLGNKIDVDGG  132 (156)
Q Consensus        70 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~  132 (156)
                      |.......+..+|++++|+|+.+....+. .+.+..+. .   .   ++|.+ +|+||+|+.++
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~-~---~---gi~~iivvvNK~Dl~~~  143 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLAR-Q---V---GVPYIVVFLNKCDMVDD  143 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHH-H---c---CCCeEEEEEEecCCcch
Confidence            87666677788999999999987432221 12222221 1   1   56755 67999999753

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.63  E-value=2.6e-15  Score=110.83  Aligned_cols=114  Identities=19%  Similarity=0.241  Sum_probs=79.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cchhhhhe
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVAFY   78 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~   78 (156)
                      ..|+++|.|++|||||.|+|.+++.. -...|..+.+.........+  ..|.++||+|-+..         .......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999999988754 23345555566566665555  56999999995422         23334456


Q ss_pred             ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        79 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+|++++|+|....-+-.. ....+.++ .   .   +.|+++|+||+|-.+.
T Consensus        82 ~eADvilfvVD~~~Git~~D-~~ia~~Lr-~---~---~kpviLvvNK~D~~~~  127 (444)
T COG1160          82 EEADVILFVVDGREGITPAD-EEIAKILR-R---S---KKPVILVVNKIDNLKA  127 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHH-HHHHHHHH-h---c---CCCEEEEEEcccCchh
Confidence            78999999999998443222 11222222 1   1   6799999999999844

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.63  E-value=8.5e-15  Score=116.18  Aligned_cols=118  Identities=18%  Similarity=0.105  Sum_probs=81.6

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCC-----CC-------------CCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS-----NQ-------------YKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (156)
                      ..+.++|+++|..++|||||+++|+...-.     ..             .....+.+.....+..+  +..+++|||||
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG   84 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPG   84 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCC
Confidence            345689999999999999999999732110     00             01122222223333333  47899999999


Q ss_pred             cccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +..+...+...++.+|++++|+|+.+....+... .+..+    ...   +.|+++|+||+|+...
T Consensus        85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~----~~~---~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQA----NRY---EVPRIAFVNKMDKTGA  142 (689)
T ss_pred             CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHH----HHc---CCCEEEEEECCCCCCC
Confidence            9888888888999999999999999865444322 22222    111   6799999999999865

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.62  E-value=2.7e-15  Score=119.34  Aligned_cols=121  Identities=20%  Similarity=0.203  Sum_probs=82.6

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcC---------------CCCC---CCCCceeeEEEEEEEEECCeEEEEEEEeCC
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNK---------------KFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTA   65 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   65 (156)
                      .....+||+++|..++|||||+++|+..               ++..   .+..+.........+.+++..+.+++||||
T Consensus        15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP   94 (720)
T TIGR00490        15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP   94 (720)
T ss_pred             CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence            3456789999999999999999999742               1111   011222222222233356667899999999


Q ss_pred             CcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        66 g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |+..+.......++.+|++++|+|+.+....+....|.. ..   . .   +.|+++|+||+|....
T Consensus        95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~---~-~---~~p~ivviNKiD~~~~  153 (720)
T TIGR00490        95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-AL---K-E---NVKPVLFINKVDRLIN  153 (720)
T ss_pred             CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HH---H-c---CCCEEEEEEChhcccc
Confidence            999888888889999999999999987533222222211 11   1 1   6688999999999753

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.61  E-value=1.1e-14  Score=110.59  Aligned_cols=121  Identities=18%  Similarity=0.133  Sum_probs=80.6

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCC------CCC--------CCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK------FSN--------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (156)
                      ..++.++|+++|..++|||||+++|++..      ...        ......+.+.......+......++++|+||+..
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~  156 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD  156 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence            35667999999999999999999998521      000        1112222333333333333446889999999999


Q ss_pred             ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG  132 (156)
Q Consensus        70 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~  132 (156)
                      |.......+..+|++++|+|+.+...-+. .+.+..+ ...      ++| +++++||+|+.+.
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~-~~~------gi~~iIvvvNK~Dl~~~  212 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLA-KQV------GVPNMVVFLNKQDQVDD  212 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHH-HHc------CCCeEEEEEecccccCH
Confidence            87777777888999999999997643222 2222222 111      567 7889999999764

>CHL00071 tufA elongation factor Tu

Probab=99.61  E-value=1.6e-14  Score=108.45  Aligned_cols=121  Identities=18%  Similarity=0.135  Sum_probs=80.6

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCC--------------CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS--------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (156)
                      ..++.++|+++|..++|||||+++|++..-.              .......+.+.......+.....++.++||||+..
T Consensus         8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~   87 (409)
T CHL00071          8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (409)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence            3566799999999999999999999864110              00111123333333344444456889999999988


Q ss_pred             ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG  132 (156)
Q Consensus        70 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~  132 (156)
                      +.......+..+|++++|+|+.....-+. ...+..+ ..   .   ++| +++++||+|+.+.
T Consensus        88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~-~~---~---g~~~iIvvvNK~D~~~~  143 (409)
T CHL00071         88 YVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLA-KQ---V---GVPNIVVFLNKEDQVDD  143 (409)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHH-HH---c---CCCEEEEEEEccCCCCH
Confidence            87676777888999999999987532221 1222222 11   1   567 7789999999864

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.61  E-value=1.4e-14  Score=107.24  Aligned_cols=115  Identities=23%  Similarity=0.334  Sum_probs=84.6

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhh--------hh
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV--------AF   77 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--------~~   77 (156)
                      .-++++++|.|++|||||+|.|.+++-. -+..+..+.++....+.+++  +.+.++||.|..+......        ..
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            3589999999999999999999988743 33455666777778888877  7899999999554433222        34


Q ss_pred             eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++.+|.+++|+|.+.+..-....     +.....    .+.|+++|.||.||..+
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~-----~~~~~~----~~~~~i~v~NK~DL~~~  339 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLA-----LIELLP----KKKPIIVVLNKADLVSK  339 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHH-----HHHhcc----cCCCEEEEEechhcccc
Confidence            67899999999999963222211     111111    27899999999999986

>PRK12736 elongation factor Tu; Reviewed

Probab=99.61  E-value=1e-14  Score=108.91  Aligned_cols=120  Identities=18%  Similarity=0.145  Sum_probs=79.5

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCC--------------CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSN--------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (156)
                      .++.++|+++|..++|||||+.+|.+.....              ......+.+.......+......+.++||||+.+|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            4567999999999999999999998531000              00112223333344445445568899999999888


Q ss_pred             cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598           71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG  132 (156)
Q Consensus        71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~  132 (156)
                      .......+..+|++++|+|+.+...-+. .+.+..+. .   .   ++| +++|+||+|+.++
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~-~---~---g~~~~IvviNK~D~~~~  143 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLAR-Q---V---GVPYLVVFLNKVDLVDD  143 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHH-H---c---CCCEEEEEEEecCCcch
Confidence            7666666788999999999987432222 12222221 1   1   567 6789999999753

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.60  E-value=8.5e-15  Score=103.13  Aligned_cols=121  Identities=21%  Similarity=0.213  Sum_probs=83.9

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc------------c
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------------Q   71 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------~   71 (156)
                      .+.+.++|+|+|+|++|||||.|.+++.+.........+++...-- .+....+++.++||||-..-            .
T Consensus        68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilg-i~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l  146 (379)
T KOG1423|consen   68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILG-IITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL  146 (379)
T ss_pred             hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeE-EEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence            4577899999999999999999999999987766666554443322 23455589999999992111            1


Q ss_pred             chhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        72 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +.....+..+|.+++++|+++....-. ...+..+..+.      ++|-++|.||.|....
T Consensus       147 q~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys------~ips~lvmnkid~~k~  200 (379)
T KOG1423|consen  147 QNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS------KIPSILVMNKIDKLKQ  200 (379)
T ss_pred             hCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh------cCCceeeccchhcchh
Confidence            122234567999999999997432111 22233333333      6789999999999765

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.60  E-value=6.9e-16  Score=116.57  Aligned_cols=120  Identities=17%  Similarity=0.278  Sum_probs=80.4

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCC--C---------------------------CCCCCceeeEEEEEEEEECC
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF--S---------------------------NQYKATIGADFLTKEVQFED   54 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~   54 (156)
                      ..++.++|+++|..++|||||+.+|+...-  .                           .......+.+.......+..
T Consensus         3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~   82 (447)
T PLN00043          3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET   82 (447)
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence            356779999999999999999998863110  0                           00011122233333444555


Q ss_pred             eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHH-------HHHHHHHHHHHhcCCCCCCCC-cEEEEEec
Q 031598           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFD-------NLNNWREEFLIQASPSDPDNF-PFVVLGNK  126 (156)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK  126 (156)
                      ....++++|+||+.+|.......+..+|++++|+|+.+. .|+       ...+.+. +....      ++ ++++++||
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~~------gi~~iIV~vNK  154 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFTL------GVKQMICCCNK  154 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHHc------CCCcEEEEEEc
Confidence            567899999999999998889999999999999999873 222       1111111 11111      55 47889999


Q ss_pred             CCCCC
Q 031598          127 IDVDG  131 (156)
Q Consensus       127 ~Dl~~  131 (156)
                      +|+.+
T Consensus       155 mD~~~  159 (447)
T PLN00043        155 MDATT  159 (447)
T ss_pred             ccCCc
Confidence            99873

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.60  E-value=7.3e-15  Score=110.20  Aligned_cols=123  Identities=17%  Similarity=0.127  Sum_probs=75.8

Q ss_pred             cccceeEEEEEEcCCCCChhHHHHHHhcCCC---CCCCCCceeeEEEEEEEEE------------------C--C----e
Q 031598            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTKEVQF------------------E--D----R   55 (156)
Q Consensus         3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~------------------~--~----~   55 (156)
                      +..++.++|+++|..++|||||+.+|.+...   ..+.....+.........+                  +  +    .
T Consensus         4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (411)
T PRK04000          4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL   83 (411)
T ss_pred             ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence            5667789999999999999999999965311   1111111111111100000                  0  0    1


Q ss_pred             EEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ...+++|||||+..+..........+|++++|+|+.++. ..+... .+..+ ....     ..|+++|+||+|+.++
T Consensus        84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l-~~~~-----i~~iiVVlNK~Dl~~~  154 (411)
T PRK04000         84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMAL-DIIG-----IKNIVIVQNKIDLVSK  154 (411)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHH-HHcC-----CCcEEEEEEeeccccc
Confidence            257999999999887666555566789999999999653 112111 11112 1111     2368999999999864

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.60  E-value=9.8e-15  Score=99.46  Aligned_cols=118  Identities=14%  Similarity=0.139  Sum_probs=73.6

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCC--CceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-------hh----h
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LG----V   75 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~----~   75 (156)
                      ++|+++|.+|+||||++|++++.+......  +..+...........+  ..+.++||||-.....       ..    .
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            479999999999999999999886543221  1222233333333444  5799999999443311       11    1


Q ss_pred             hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        76 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ......|++++|+++.+. + ......++.+...+....  ..++++|.|++|...+
T Consensus        79 ~~~~g~~~illVi~~~~~-t-~~d~~~l~~l~~~fg~~~--~~~~ivv~T~~d~l~~  131 (196)
T cd01852          79 LSAPGPHAFLLVVPLGRF-T-EEEEQAVETLQELFGEKV--LDHTIVLFTRGDDLEG  131 (196)
T ss_pred             hcCCCCEEEEEEEECCCc-C-HHHHHHHHHHHHHhChHh--HhcEEEEEECccccCC
Confidence            123568999999998872 2 122333444444443211  2478999999998764

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.60  E-value=1.5e-14  Score=108.07  Aligned_cols=118  Identities=16%  Similarity=0.127  Sum_probs=77.7

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCC----------------CCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK----------------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (156)
                      .++.++|+++|..++|||||+++|.+.-                ...+....  .+.......+......+.+|||||++
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG--~Ti~~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARG--ITINTAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcC--cceeeEEEEEcCCCEEEEEEECCchH
Confidence            4667999999999999999999997320                00111122  23333344455555789999999998


Q ss_pred             cccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEEecCCCCCC
Q 031598           69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV-VLGNKIDVDGG  132 (156)
Q Consensus        69 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~  132 (156)
                      .|.......+..+|++++|+|+.+....+.. +.+..+. ..      ++|.+ +|+||+|+.++
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~-~~------gi~~iIvvvNK~Dl~~~  143 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLAR-QV------GVPYIVVFLNKCDMVDD  143 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHH-Hc------CCCEEEEEEEecccCCH
Confidence            8876666666788999999999874322221 1122221 11      55654 68999999764

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.59  E-value=4.7e-14  Score=100.95  Aligned_cols=127  Identities=16%  Similarity=0.124  Sum_probs=75.1

Q ss_pred             CcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch-------
Q 031598            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-------   73 (156)
Q Consensus         2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------   73 (156)
                      ++...+.++|+++|.+|+||||++|++++.+.... .....+.+.........+  ..+.++||||..+....       
T Consensus        32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~  109 (313)
T TIGR00991        32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNI  109 (313)
T ss_pred             ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHH
Confidence            44566789999999999999999999998864321 111111222222223333  68999999995543211       


Q ss_pred             hhhhe--ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           74 GVAFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        74 ~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ...++  ...|++++|...+.....+.-...++.+...+...-  ..++++|.|++|....
T Consensus       110 ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i--w~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       110 IKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI--WRKSLVVLTHAQFSPP  168 (313)
T ss_pred             HHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh--hccEEEEEECCccCCC
Confidence            11111  258999999654432111111334444444443221  3478999999998753

>PRK00007 elongation factor G; Reviewed

Probab=99.59  E-value=1.7e-14  Score=114.46  Aligned_cols=119  Identities=18%  Similarity=0.181  Sum_probs=81.2

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCC--CCC----------------CCCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--FSN----------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (156)
                      ..+.++|+++|..++|||||+++|+...  ...                ...+..+.+.....+..+  +..++++||||
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG   84 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPG   84 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCC
Confidence            4457899999999999999999997311  000                012222223223333333  47899999999


Q ss_pred             cccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      +..+.......++.+|++++|+|+......+....|. .+.    ..   ++|+++++||+|+.+.+
T Consensus        85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~----~~---~~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QAD----KY---KVPRIAFVNKMDRTGAD  143 (693)
T ss_pred             cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHH----Hc---CCCEEEEEECCCCCCCC
Confidence            9888777788889999999999988764433322222 221    11   67999999999998653

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.58  E-value=9.7e-15  Score=109.49  Aligned_cols=121  Identities=17%  Similarity=0.116  Sum_probs=76.0

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCC---CCCCceeeEEEEEE--------------EEE----CC------eEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN---QYKATIGADFLTKE--------------VQF----ED------RLFT   58 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~--------------~~~----~~------~~~~   58 (156)
                      ++.++|+++|..++|||||+++|.+.....   ......+.......              ++.    +.      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            567899999999999999999997542211   10111111110000              000    01      1357


Q ss_pred             EEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        59 ~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||||++.+...+...+..+|++++|+|++++.......+.+..+ ....     ..|+++|+||+|+.+.
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g-----i~~iIVvvNK~Dl~~~  149 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG-----IKNIVIVQNKIDLVSK  149 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcC-----CCeEEEEEEccccCCH
Confidence            999999999999888888888899999999999753111112222222 2221     2368999999999864

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK12739 elongation factor G; Reviewed

Probab=99.58  E-value=1.3e-14  Score=115.15  Aligned_cols=117  Identities=19%  Similarity=0.155  Sum_probs=80.9

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCC-----CC-------------CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKK-----FS-------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (156)
                      .+.++|+++|..++|||||+++|+...     ..             ....+..+.+.....+..+  +..++++||||+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~   83 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGH   83 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCH
Confidence            457899999999999999999997421     00             0012222223223333333  478999999999


Q ss_pred             ccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        68 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+...+...++.+|++++|+|+.+....+.. ..+..+    ...   +.|+++++||+|+...
T Consensus        84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~----~~~---~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQA----DKY---GVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHH----HHc---CCCEEEEEECCCCCCC
Confidence            88888888899999999999999876433322 222222    111   6799999999999865

>PLN03127 Elongation factor Tu; Provisional

Probab=99.57  E-value=6.9e-14  Score=105.75  Aligned_cols=118  Identities=19%  Similarity=0.163  Sum_probs=78.1

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcC------C----------CCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNK------K----------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (156)
                      .++.++|+++|..++|||||+++|.+.      .          ...+..+  +.+.......+.....++.++||||+.
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~r--GiTi~~~~~~~~~~~~~i~~iDtPGh~  135 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKAR--GITIATAHVEYETAKRHYAHVDCPGHA  135 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhc--CceeeeeEEEEcCCCeEEEEEECCCcc
Confidence            456799999999999999999999622      1          0111112  233333444455555789999999998


Q ss_pred             cccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598           69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG  132 (156)
Q Consensus        69 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~  132 (156)
                      .+.......+..+|++++|+|+.+...-+. .+.+..+ ..   .   ++| +++++||+|+.++
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~-~~---~---gip~iIvviNKiDlv~~  192 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLA-RQ---V---GVPSLVVFLNKVDVVDD  192 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHH-HH---c---CCCeEEEEEEeeccCCH
Confidence            876666666677999999999986532221 1111111 11   1   678 5789999999854

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.56  E-value=1.8e-14  Score=116.22  Aligned_cols=120  Identities=16%  Similarity=0.197  Sum_probs=82.6

Q ss_pred             cccceeEEEEEEcCCCCChhHHHHHHhcCCCC----------------CCCCCceeeEEEEEEEEE--------------
Q 031598            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFS----------------NQYKATIGADFLTKEVQF--------------   52 (156)
Q Consensus         3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------   52 (156)
                      +...+.++|+|+|..++|||||+.+|+...-.                .......+.......+.+              
T Consensus        14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~   93 (843)
T PLN00116         14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER   93 (843)
T ss_pred             hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence            44567899999999999999999999743210                000111111111111221              


Q ss_pred             CCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      +...+.++++||||+.+|.......++.+|++++|+|+.+....+....|....    . .   ++|+++++||+|+.
T Consensus        94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~----~-~---~~p~i~~iNK~D~~  163 (843)
T PLN00116         94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----G-E---RIRPVLTVNKMDRC  163 (843)
T ss_pred             CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH----H-C---CCCEEEEEECCccc
Confidence            123578999999999999888889999999999999999875544433333322    1 1   78999999999998

>PRK00049 elongation factor Tu; Reviewed

Probab=99.56  E-value=6.5e-14  Score=104.71  Aligned_cols=120  Identities=18%  Similarity=0.154  Sum_probs=79.9

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCC--------------CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS--------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (156)
                      ..++.++|+++|..++|||||+++|++....              .......+.+.......+.....++.++||||+..
T Consensus         8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence            3466799999999999999999999863110              00011223333333444444556889999999988


Q ss_pred             ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEEecCCCCC
Q 031598           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV-VLGNKIDVDG  131 (156)
Q Consensus        70 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~  131 (156)
                      +.......+..+|++++|+|+.+...-+. ...+..+. .   .   +.|.+ +++||+|+.+
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~-~---~---g~p~iiVvvNK~D~~~  142 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLAR-Q---V---GVPYIVVFLNKCDMVD  142 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHH-H---c---CCCEEEEEEeecCCcc
Confidence            87666777889999999999987533221 22222221 1   1   56875 6899999975

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.56  E-value=3.3e-14  Score=107.58  Aligned_cols=117  Identities=17%  Similarity=0.240  Sum_probs=78.3

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCC--C-----------------------------CCCCCCceeeEEEEEEEEEC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--F-----------------------------SNQYKATIGADFLTKEVQFE   53 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~   53 (156)
                      .++.++|+++|..++|||||+.+|+..-  .                             ..+...  +.+.......+.
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~r--GiTid~~~~~~~   81 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERER--GITIDIALWKFE   81 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhc--CEeEEeeeEEEc
Confidence            4667999999999999999999987411  0                             111122  223333334445


Q ss_pred             CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhh---H---HHHHHHHHHHHHhcCCCCCCCCc-EEEEEec
Q 031598           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---F---DNLNNWREEFLIQASPSDPDNFP-FVVLGNK  126 (156)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK  126 (156)
                      .....++++||||+.+|.......+..+|++++|+|+.....   +   ....+-+. +...+      ++| +++++||
T Consensus        82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~~------gi~~iiv~vNK  154 (446)
T PTZ00141         82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFTL------GVKQMIVCINK  154 (446)
T ss_pred             cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHHc------CCCeEEEEEEc
Confidence            556789999999999998888888899999999999987531   1   01111111 11211      555 6799999


Q ss_pred             CCCC
Q 031598          127 IDVD  130 (156)
Q Consensus       127 ~Dl~  130 (156)
                      +|..
T Consensus       155 mD~~  158 (446)
T PTZ00141        155 MDDK  158 (446)
T ss_pred             cccc
Confidence            9954

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.56  E-value=7.9e-14  Score=97.99  Aligned_cols=123  Identities=16%  Similarity=0.138  Sum_probs=73.5

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCC-ceeeEEEEEEEEECCeEEEEEEEeCCCcccccc---h-------
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---L-------   73 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~-------   73 (156)
                      ....++|+++|.+|+|||||+|++++......... ..+..........++  ..+.++||||-.+...   .       
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            45579999999999999999999998865332211 122222222233333  6799999999543310   0       


Q ss_pred             hhhhee--cccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           74 GVAFYR--GADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        74 ~~~~~~--~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ...++.  ..+++++|...+... ... -...++.+...+...-  ..++++|.||+|....
T Consensus       106 I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~p  164 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSI--WRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhh--HhCEEEEEeCCccCCC
Confidence            112232  468888887555432 222 1233444444433211  3479999999999755

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.56  E-value=7.5e-14  Score=109.10  Aligned_cols=114  Identities=21%  Similarity=0.163  Sum_probs=74.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC---CCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      -|.++|..++|||||+++|.+.+   .........+.+.....+...+ +..+.+|||||++.|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            47899999999999999998643   2222223333333222232222 2468999999999887776777889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~  132 (156)
                      |+|+.+...-+. .+.+ .+....      +.| +++|+||+|+.++
T Consensus        81 VVda~eg~~~qT-~ehl-~il~~l------gi~~iIVVlNKiDlv~~  119 (614)
T PRK10512         81 VVACDDGVMAQT-REHL-AILQLT------GNPMLTVALTKADRVDE  119 (614)
T ss_pred             EEECCCCCcHHH-HHHH-HHHHHc------CCCeEEEEEECCccCCH
Confidence            999987432121 1111 122222      445 6799999999764

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.56  E-value=1.5e-14  Score=108.48  Aligned_cols=115  Identities=18%  Similarity=0.144  Sum_probs=74.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCC---------------------------------CCCCCceeeEEEEEEEEECCe
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFS---------------------------------NQYKATIGADFLTKEVQFEDR   55 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~   55 (156)
                      ++|+++|..++|||||+.+|+...-.                                 ++.....+.+...  ..+...
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~--~~~~~~   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAY--RYFSTD   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeee--EEEccC
Confidence            58999999999999999999633210                                 0001111122222  223334


Q ss_pred             EEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..++.++||||+..|.......+..+|++++|+|+.....-+....  ..+...+.     ..++++|+||+|+.+.
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~--~~~~~~~~-----~~~iivviNK~D~~~~  148 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH--SYIASLLG-----IRHVVLAVNKMDLVDY  148 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH--HHHHHHcC-----CCcEEEEEEecccccc
Confidence            4689999999999887666677889999999999987543222111  11222222     2368999999999864

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=7.5e-15  Score=92.56  Aligned_cols=118  Identities=23%  Similarity=0.420  Sum_probs=90.3

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +..+++++|..|+||||+..++.-.+.. ...|+.+..  ...+++++  ..+++||..|+-..+..|..+++..+++++
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfn--ve~v~yKN--Lk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFN--VETVPYKN--LKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcC--cccccccc--ccceeeEccCcccccHHHHHHhcccceEEE
Confidence            5689999999999999998888655432 234555543  44455544  889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |+|.+|.+........+-.++   ......+..+++++||.|....
T Consensus        92 VVDssd~dris~a~~el~~mL---~E~eLq~a~llv~anKqD~~~~  134 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSML---QEEELQHAKLLVFANKQDYSGA  134 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHh---ccHhhcCceEEEEeccccchhh
Confidence            999999887666544333333   3344446788999999998764

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.54  E-value=3e-14  Score=108.50  Aligned_cols=119  Identities=18%  Similarity=0.185  Sum_probs=77.0

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCC--C-------------------------------CCCCceeeEEEEEEEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS--N-------------------------------QYKATIGADFLTKEVQ   51 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~--~-------------------------------~~~~~~~~~~~~~~~~   51 (156)
                      .+..++|+++|..++|||||+.+|+...-.  .                               +.....+.+.....  
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~--  101 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY--  101 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE--
Confidence            466799999999999999999999744210  0                               00011112222222  


Q ss_pred             ECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      +.....++.++||||+..+.......+..+|++++|+|+.....-+....  ..+...+.     ..|+++|+||+|+.+
T Consensus       102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~--~~l~~~lg-----~~~iIvvvNKiD~~~  174 (474)
T PRK05124        102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH--SFIATLLG-----IKHLVVAVNKMDLVD  174 (474)
T ss_pred             eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH--HHHHHHhC-----CCceEEEEEeecccc
Confidence            33344689999999998886655666789999999999987532111111  11222222     237899999999985


Q ss_pred             C
Q 031598          132 G  132 (156)
Q Consensus       132 ~  132 (156)
                      .
T Consensus       175 ~  175 (474)
T PRK05124        175 Y  175 (474)
T ss_pred             c
Confidence            4

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.54  E-value=2.2e-14  Score=106.04  Aligned_cols=116  Identities=24%  Similarity=0.235  Sum_probs=79.3

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch-----------h
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-----------G   74 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~   74 (156)
                      ..++|+++|.|++|||||+|++++++-. ....+..+.+.....+..++  ..+.++||.|...-...           .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence            4699999999999999999999987632 22233333444455555556  56889999993221111           1


Q ss_pred             hhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        75 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ...+..+|++++|+|++.+.+-+..     .+..+....   +.++++|.||+|+.++
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~-----~ia~~i~~~---g~~~vIvvNKWDl~~~  304 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDL-----RIAGLIEEA---GRGIVIVVNKWDLVEE  304 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHH-----HHHHHHHHc---CCCeEEEEEccccCCc
Confidence            1234678999999999987654432     333333322   7799999999999876

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=3.9e-14  Score=106.39  Aligned_cols=119  Identities=18%  Similarity=0.237  Sum_probs=91.6

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCC-----------------CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (156)
                      .+..|+.|+..-.-|||||..+|+...-                 .++...|......+..+. .+..+.++++|||||.
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~-~~~~ylLNLIDTPGHv  136 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYK-DGQSYLLNLIDTPGHV  136 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEE-cCCceEEEeecCCCcc
Confidence            4578999999999999999999873211                 122233332222222222 3566899999999999


Q ss_pred             cccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        69 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      +|..+....+..|+++++|+|++..-.-+.+..++..+..        +..+|.|+||+|++..+
T Consensus       137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~--------~L~iIpVlNKIDlp~ad  193 (650)
T KOG0462|consen  137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA--------GLAIIPVLNKIDLPSAD  193 (650)
T ss_pred             cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc--------CCeEEEeeeccCCCCCC
Confidence            9999999999999999999999998777777777777642        67899999999999984

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.53  E-value=1e-13  Score=98.10  Aligned_cols=122  Identities=18%  Similarity=0.180  Sum_probs=83.9

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cchhhhheec
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRG   80 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~   80 (156)
                      +..+.++|.|++|||||++++.+.+..--..+..+.......+.+++- .++++-|.||.-+-       ....-..++.
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHh
Confidence            356789999999999999999988754222222222222333444442 25999999993322       2222344578


Q ss_pred             ccEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           81 ADCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        81 ~~~~l~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |..+++|+|++.+   ..++.++....++.-+-+  ...+.|.++|+||+|+++.
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek--~L~~rp~liVaNKiD~~ea  327 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK--GLADRPALIVANKIDLPEA  327 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh--hhccCceEEEEeccCchhH
Confidence            9999999999998   788887777777654433  2336799999999999643

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.53  E-value=2.1e-14  Score=99.98  Aligned_cols=120  Identities=18%  Similarity=0.333  Sum_probs=82.3

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEE-EEEECCeEEEEEEEeCCCccc-------ccchhhh
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK-EVQFEDRLFTLQIWDTAGQER-------FQSLGVA   76 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~   76 (156)
                      ...+++++++|..|+||||+||+++.....+...-..+.+.... ...+++  -.+.+||+||..+       ++.....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence            34679999999999999999999996554433222222211111 122333  5799999999444       6667778


Q ss_pred             heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++...|.++.++++.++.--- -.+++..+.....     +.++++++|.+|...+
T Consensus       114 ~l~~~DLvL~l~~~~draL~~-d~~f~~dVi~~~~-----~~~~i~~VtQ~D~a~p  163 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGT-DEDFLRDVIILGL-----DKRVLFVVTQADRAEP  163 (296)
T ss_pred             HhhhccEEEEeccCCCccccC-CHHHHHHHHHhcc-----CceeEEEEehhhhhcc
Confidence            889999999999999875322 2344455543333     4699999999999765

>PTZ00416 elongation factor 2; Provisional

Probab=99.52  E-value=7.3e-14  Score=112.64  Aligned_cols=118  Identities=19%  Similarity=0.201  Sum_probs=79.2

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCC--C--------------CCCCceeeEEEEEEEEEC--------CeEEEEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS--N--------------QYKATIGADFLTKEVQFE--------DRLFTLQ   60 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~   60 (156)
                      ..+.++|+++|..++|||||+++|+...-.  .              +.....+.......+.+.        +..+.++
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            455689999999999999999999853210  0              000011111111112222        2257899


Q ss_pred             EEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        61 i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      ++||||+.++.......++.+|++++|+|+.+.-..+.-.-| ..+.    ..   +.|+++|+||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~----~~---~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQAL----QE---RIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHH----Hc---CCCEEEEEEChhhh
Confidence            999999999988888889999999999999986443332222 2221    11   67999999999998

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.52  E-value=2.7e-13  Score=94.08  Aligned_cols=113  Identities=22%  Similarity=0.248  Sum_probs=71.0

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCC----------------Cc-------eeeEEE---------------EEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYK----------------AT-------IGADFL---------------TKEVQ   51 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~----------------~~-------~~~~~~---------------~~~~~   51 (156)
                      ||+++|+.++|||||+.+|....+.....                .+       .+.+..               ...+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            58999999999999999998654421110                00       000000               01111


Q ss_pred             ECCeEEEEEEEeCCCcccccchhhhhee--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598           52 FEDRLFTLQIWDTAGQERFQSLGVAFYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (156)
Q Consensus        52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  129 (156)
                        ..+..++++||||+..+.......+.  .+|++++|+|+.....-.. ..++..+.    ..   ++|+++|+||+|+
T Consensus        81 --~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~----~~---~ip~ivvvNK~D~  150 (224)
T cd04165          81 --KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLAL----AL---NIPVFVVVTKIDL  150 (224)
T ss_pred             --eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHH----Hc---CCCEEEEEECccc
Confidence              12357899999999888655555554  6899999999887543221 22222221    11   6799999999999


Q ss_pred             CCC
Q 031598          130 DGG  132 (156)
Q Consensus       130 ~~~  132 (156)
                      .++
T Consensus       151 ~~~  153 (224)
T cd04165         151 APA  153 (224)
T ss_pred             cCH
Confidence            754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.50  E-value=1.6e-13  Score=105.66  Aligned_cols=113  Identities=20%  Similarity=0.262  Sum_probs=81.8

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc------cchhhhhe--e
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------QSLGVAFY--R   79 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~~--~   79 (156)
                      ..+++++|.|++|||||.|++.+.+..--..+..+.+.......+++  ..++++|+||.-..      +.....++  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            45699999999999999999998876655566665665555565555  56999999993322      33333344  4


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        80 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..|+++-|+|++|.+.--.+.-++.++          +.|++++.|++|..++
T Consensus        81 ~~D~ivnVvDAtnLeRnLyltlQLlE~----------g~p~ilaLNm~D~A~~  123 (653)
T COG0370          81 KPDLIVNVVDATNLERNLYLTLQLLEL----------GIPMILALNMIDEAKK  123 (653)
T ss_pred             CCCEEEEEcccchHHHHHHHHHHHHHc----------CCCeEEEeccHhhHHh
Confidence            569999999999976433333223332          7899999999999876

>COG2262 HflX GTPases [General function prediction only]

Probab=99.50  E-value=4.7e-13  Score=97.82  Aligned_cols=123  Identities=22%  Similarity=0.239  Sum_probs=85.8

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc--ccchhhh------
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLGVA------   76 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~------   76 (156)
                      +.....|.++|..++|||||.|++.+...........+-+.....+...+ +..+.+-||.|--.  ......+      
T Consensus       189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE  267 (411)
T COG2262         189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE  267 (411)
T ss_pred             ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH
Confidence            34568899999999999999999998776544444444556666666665 35788999999211  1111122      


Q ss_pred             heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ....+|+++.|+|+++|...+.+.....-+...    .....|+|+|.||+|+..+
T Consensus       268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el----~~~~~p~i~v~NKiD~~~~  319 (411)
T COG2262         268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEI----GADEIPIILVLNKIDLLED  319 (411)
T ss_pred             HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc----CCCCCCEEEEEecccccCc
Confidence            125689999999999996655555444444332    2236899999999998765

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.50  E-value=8.6e-14  Score=109.59  Aligned_cols=120  Identities=18%  Similarity=0.140  Sum_probs=74.9

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCC-------------CCC------------------ceeeEEEEEEEEEC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-------------YKA------------------TIGADFLTKEVQFE   53 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-------------~~~------------------~~~~~~~~~~~~~~   53 (156)
                      .+..++|+++|.+++|||||+++|+...-.-.             ...                  ..+.+.......+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            34568999999999999999999985421100             000                  00111111122223


Q ss_pred             CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      .....+.++||||+..+.......+..+|++++|+|+.....-+... ... +.....     ..++++|+||+|+.+
T Consensus       101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~~-~~~~~~-----~~~iivvvNK~D~~~  171 (632)
T PRK05506        101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR-HSF-IASLLG-----IRHVVLAVNKMDLVD  171 (632)
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH-HHH-HHHHhC-----CCeEEEEEEeccccc
Confidence            33467889999999887655566678999999999997653221111 111 122221     247899999999975

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.49  E-value=1e-13  Score=88.76  Aligned_cols=98  Identities=28%  Similarity=0.438  Sum_probs=65.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCc----ccccchhhhheecccEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----ERFQSLGVAFYRGADCC   84 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~~~~   84 (156)
                      -||+++|+.|||||||+++|.+.+..  +..+.       .+.+.+     .++||||.    ..+..-.......+|++
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~~--~~KTq-------~i~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V   67 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEIR--YKKTQ-------AIEYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVV   67 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCCC--cCccc-------eeEecc-----cEEECChhheeCHHHHHHHHHHHhhCCEE
Confidence            48999999999999999999987642  22221       112212     34799992    22333333444679999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      ++|.|++++.+.-. ..+...+          +.|+|=|+||+|+..
T Consensus        68 ~ll~dat~~~~~~p-P~fa~~f----------~~pvIGVITK~Dl~~  103 (143)
T PF10662_consen   68 LLLQDATEPRSVFP-PGFASMF----------NKPVIGVITKIDLPS  103 (143)
T ss_pred             EEEecCCCCCccCC-chhhccc----------CCCEEEEEECccCcc
Confidence            99999998754221 2222222          679999999999994

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.49  E-value=8.5e-14  Score=111.09  Aligned_cols=121  Identities=18%  Similarity=0.157  Sum_probs=80.9

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCC--C-C---------------CCCceeeEEEEEEEEECCeEEEEEEEeCC
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS--N-Q---------------YKATIGADFLTKEVQFEDRLFTLQIWDTA   65 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~--~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   65 (156)
                      ...+.++|+++|..++|||||+.+|+...-.  . .               ...+.........+.+.+..+.++++|||
T Consensus        16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP   95 (731)
T PRK07560         16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP   95 (731)
T ss_pred             chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence            3456789999999999999999999743210  0 0               00111111111222334456889999999


Q ss_pred             CcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        66 g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |+.++.......++.+|++++|+|+......+....|....    ..    +.|.++++||+|+...
T Consensus        96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~----~~----~~~~iv~iNK~D~~~~  154 (731)
T PRK07560         96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQAL----RE----RVKPVLFINKVDRLIK  154 (731)
T ss_pred             CccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHH----Hc----CCCeEEEEECchhhcc
Confidence            99998888888899999999999998764333222232211    11    5578999999998743

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.49  E-value=8.7e-13  Score=99.79  Aligned_cols=139  Identities=17%  Similarity=0.299  Sum_probs=99.3

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      ..++.++|.++|+.++|||.+++.|+++.+.+....+....+....+...+..-.+.+-|.+-. ........- ..||+
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv  498 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV  498 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence            3456799999999999999999999998887755566666666666666666667777777754 222221112 77999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhcccc
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYS  154 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~  154 (156)
                      +.++||.+++.+|+.+...+......      ..+|+++|++|+|+.+..  +...-.  .+-.|.+.+++
T Consensus       499 ~~~~YDsS~p~sf~~~a~v~~~~~~~------~~~Pc~~va~K~dlDe~~--Q~~~iq--pde~~~~~~i~  559 (625)
T KOG1707|consen  499 ACLVYDSSNPRSFEYLAEVYNKYFDL------YKIPCLMVATKADLDEVP--QRYSIQ--PDEFCRQLGLP  559 (625)
T ss_pred             EEEecccCCchHHHHHHHHHHHhhhc------cCCceEEEeeccccchhh--hccCCC--hHHHHHhcCCC
Confidence            99999999999999887666544322      278999999999999873  222222  24467666654

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=1.6e-13  Score=100.31  Aligned_cols=137  Identities=19%  Similarity=0.215  Sum_probs=91.8

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCC-----------------------------CCCCCCceeeEEEEEEEEECC
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF-----------------------------SNQYKATIGADFLTKEVQFED   54 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   54 (156)
                      ..++.++++++|...+|||||+-+|+-+--                             ........+.+.......+..
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet   82 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET   82 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence            456779999999999999999999864310                             011122223344444445555


Q ss_pred             eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh---hHH--HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (156)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  129 (156)
                      ..+.++|+|+||+.+|-.....-...+|+.++|+|+.+.+   .|.  ....-+..+.+.+.     -..+|++.||+|+
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-----i~~lIVavNKMD~  157 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-----IKQLIVAVNKMDL  157 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-----CceEEEEEEcccc
Confidence            5688999999999888777777788899999999999874   111  11222333333333     2258999999999


Q ss_pred             CCCCceeeeeccccchhh
Q 031598          130 DGGNSRVVCFGEEGSSMV  147 (156)
Q Consensus       130 ~~~~~~~~~~~e~~~~~~  147 (156)
                      .+-  ++..++|......
T Consensus       158 v~w--de~rf~ei~~~v~  173 (428)
T COG5256         158 VSW--DEERFEEIVSEVS  173 (428)
T ss_pred             ccc--CHHHHHHHHHHHH
Confidence            985  5566666555443

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.46  E-value=1.5e-12  Score=92.59  Aligned_cols=87  Identities=21%  Similarity=0.209  Sum_probs=67.3

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc-------cccchhhhhee
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-------RFQSLGVAFYR   79 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~   79 (156)
                      .--+++++|.|++|||||++.|.+.+......+..+.+.....+.+++  .+++++|+||.-       ..........+
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R  139 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR  139 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence            347899999999999999999999886655555555555566677766  789999999822       22345566789


Q ss_pred             cccEEEEEEECCChhh
Q 031598           80 GADCCVLVYDVNSMKS   95 (156)
Q Consensus        80 ~~~~~l~v~d~~~~~~   95 (156)
                      .||.+++|+|+..+..
T Consensus       140 ~ADlIiiVld~~~~~~  155 (365)
T COG1163         140 NADLIIIVLDVFEDPH  155 (365)
T ss_pred             cCCEEEEEEecCCChh
Confidence            9999999999997654

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.46  E-value=2.4e-13  Score=93.70  Aligned_cols=119  Identities=16%  Similarity=0.122  Sum_probs=70.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCC--CceeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cchhh----
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGV----   75 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~----   75 (156)
                      ++|+++|..|+||||++|.+++........  ...+..+........+  ..+.++||||-.+.       .....    
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            689999999999999999999887654332  2222333334445566  67899999992211       11111    


Q ss_pred             hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        76 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      ....+.+++++|+...+..  ..-...++.+...+....  ...++||.|.+|...++
T Consensus        79 ~~~~g~ha~llVi~~~r~t--~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~  132 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRFT--EEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDD  132 (212)
T ss_dssp             HTTT-ESEEEEEEETTB-S--HHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTT
T ss_pred             hccCCCeEEEEEEecCcch--HHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccc
Confidence            1235689999999998432  112333444554444332  23689999999887763

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.45  E-value=4.6e-13  Score=99.38  Aligned_cols=122  Identities=18%  Similarity=0.232  Sum_probs=94.0

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCC-----------------CCCCCCCceeeEEEEEEEEE-CCeEEEEEEEeCC
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK-----------------FSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTA   65 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~-----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~   65 (156)
                      ...+..|+.++..-.-|||||..|++...                 ..+...-|...+.....+.. +++.+.++++|||
T Consensus         5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP   84 (603)
T COG0481           5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP   84 (603)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence            44567899999999999999999997431                 12333333333333333333 4577999999999


Q ss_pred             CcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        66 g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      ||.+|.......+..|.+.++|+|++..-.-+.+...+..+..        +.-++-|+||+||+..+
T Consensus        85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~--------~LeIiPViNKIDLP~Ad  144 (603)
T COG0481          85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--------NLEIIPVLNKIDLPAAD  144 (603)
T ss_pred             CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc--------CcEEEEeeecccCCCCC
Confidence            9999999999999999999999999998777777777777642        56789999999999884

>PRK12740 elongation factor G; Reviewed

Probab=99.44  E-value=8.1e-13  Score=104.85  Aligned_cols=109  Identities=21%  Similarity=0.247  Sum_probs=75.0

Q ss_pred             EcCCCCChhHHHHHHhcCCCC------------------CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhh
Q 031598           14 LGDSGVGKTSLMNQYVNKKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV   75 (156)
Q Consensus        14 ~G~~~~GKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   75 (156)
                      +|..++|||||+++|+...-.                  ....+..+.......+...  ++.+++|||||+..+...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence            599999999999999643210                  0001222222223334444  47899999999988877888


Q ss_pred             hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        76 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..++.+|++++|+|+++.........|. .+.    ..   +.|+++|+||+|+...
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~----~~---~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVWR-QAE----KY---GVPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHH----Hc---CCCEEEEEECCCCCCC
Confidence            8899999999999999876555433322 221    11   6799999999999865

>cd00066 G-alpha G protein alpha subunit

Probab=99.43  E-value=9.7e-13  Score=95.74  Aligned_cols=79  Identities=13%  Similarity=0.140  Sum_probs=60.2

Q ss_pred             EEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-------SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID  128 (156)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  128 (156)
                      .+.+.+||++|+...+..|..++..++++++|+|.++-+       ....+.+.+..+...+......++|+++++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            467999999999999999999999999999999999741       1123334444444444544445899999999999


Q ss_pred             CCCCCc
Q 031598          129 VDGGNS  134 (156)
Q Consensus       129 l~~~~~  134 (156)
                      +..+..
T Consensus       240 ~f~~ki  245 (317)
T cd00066         240 LFEEKI  245 (317)
T ss_pred             HHHHhh
Confidence            987643

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=2.1e-13  Score=91.53  Aligned_cols=122  Identities=18%  Similarity=0.286  Sum_probs=83.4

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhhee---ccc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR---GAD   82 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~~   82 (156)
                      +..-.|+++|+.+||||+|...|....+..+...   .......+.+.+  -..+++|.||+...+.....+++   .+-
T Consensus        36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~ak  110 (238)
T KOG0090|consen   36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAK  110 (238)
T ss_pred             ccCCcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccce
Confidence            3346799999999999999999987754322111   111122222233  34899999999999888888887   789


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           83 CCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        83 ~~l~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      ++++|+|...- ....++.+++-.+...... ....+|++++.||.|+.-..
T Consensus       111 aiVFVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~vLIaCNKqDl~tAk  161 (238)
T KOG0090|consen  111 AIVFVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPVLIACNKQDLFTAK  161 (238)
T ss_pred             eEEEEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCEEEEecchhhhhcC
Confidence            99999998763 3344455555555544321 23378999999999997654

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=5.6e-13  Score=100.32  Aligned_cols=122  Identities=25%  Similarity=0.266  Sum_probs=93.7

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      +++.-|.++|.-.-|||||+..|-+...........+....-..++.+.+ -.+++.||||+.-|..|...-....|.++
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvV  229 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVV  229 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence            45677899999999999999999988877666666555555555665543 68999999999999999988888999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCcee
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV  136 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~  136 (156)
                      +|+.+.|....+.+    +.+. +.+..   +.|+++.+||+|.++.++..
T Consensus       230 LVVAadDGVmpQT~----EaIk-hAk~A---~VpiVvAinKiDkp~a~pek  272 (683)
T KOG1145|consen  230 LVVAADDGVMPQTL----EAIK-HAKSA---NVPIVVAINKIDKPGANPEK  272 (683)
T ss_pred             EEEEccCCccHhHH----HHHH-HHHhc---CCCEEEEEeccCCCCCCHHH
Confidence            99999986544432    2222 11222   88999999999999875443

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=1.8e-12  Score=102.03  Aligned_cols=121  Identities=18%  Similarity=0.183  Sum_probs=90.0

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCC-----CCC-----------CCCceeeEEEEEEEEECCe-EEEEEEEeCCCc
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF-----SNQ-----------YKATIGADFLTKEVQFEDR-LFTLQIWDTAGQ   67 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~   67 (156)
                      ..+.++|.++|+.++||||+..+++...-     ...           .....+.+......+.... .+.++++|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            45679999999999999999999873211     000           0111223333333333334 489999999999


Q ss_pred             ccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        68 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      .+|.......++.+|++++|+|+......+.-.-|++....        +.|.++++||+|....+
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~--------~vp~i~fiNKmDR~~a~  144 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY--------GVPRILFVNKMDRLGAD  144 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc--------CCCeEEEEECccccccC
Confidence            99999999999999999999999997766665556665431        78999999999998764

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.39  E-value=1.8e-12  Score=93.08  Aligned_cols=138  Identities=17%  Similarity=0.143  Sum_probs=97.2

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCC---------------------------------CCCCCCceeeEEEEEEEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF---------------------------------SNQYKATIGADFLTKEVQ   51 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~   51 (156)
                      .++.+|++-+|.-.-||||||-||+...-                                 ..+.....+.+..+..+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            45679999999999999999999986421                                 122233344555555543


Q ss_pred             ECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                        ..+.+|.+-||||+++|......-.+.||+.++++|+...-  .+...-+..+..++..     ..+++..||+||.+
T Consensus        83 --T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv--l~QTrRHs~I~sLLGI-----rhvvvAVNKmDLvd  153 (431)
T COG2895          83 --TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV--LEQTRRHSFIASLLGI-----RHVVVAVNKMDLVD  153 (431)
T ss_pred             --cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh--HHHhHHHHHHHHHhCC-----cEEEEEEeeecccc
Confidence              34468999999999999877777788999999999986532  3333334455555542     25889999999998


Q ss_pred             CCceeeeeccccchhhhhhccc
Q 031598          132 GNSRVVCFGEEGSSMVCLQRKY  153 (156)
Q Consensus       132 ~~~~~~~~~e~~~~~~~~~~~~  153 (156)
                      -  .+..++++..++.....++
T Consensus       154 y--~e~~F~~I~~dy~~fa~~L  173 (431)
T COG2895         154 Y--SEEVFEAIVADYLAFAAQL  173 (431)
T ss_pred             c--CHHHHHHHHHHHHHHHHHc
Confidence            7  5667777766655554443

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=3.5e-12  Score=97.97  Aligned_cols=121  Identities=24%  Similarity=0.266  Sum_probs=87.1

Q ss_pred             CcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCcee---------------eEEE-----EEEEEECCeEEEEEE
Q 031598            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG---------------ADFL-----TKEVQFEDRLFTLQI   61 (156)
Q Consensus         2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~---------------~~~~-----~~~~~~~~~~~~~~i   61 (156)
                      +......+++.++|.-+.|||+|+..|..+..++...+...               ....     ...-..++..+.+++
T Consensus       122 ~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni  201 (971)
T KOG0468|consen  122 MDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI  201 (971)
T ss_pred             ccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence            45566789999999999999999999987655322111110               0000     111122566788999


Q ss_pred             EeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        62 ~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      .||||+.++.....+.++.+|++++++|+.+..++..-+.....+    . .   +.|+.+|+||+|+.
T Consensus       202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai----q-~---~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI----Q-N---RLPIVVVINKVDRL  262 (971)
T ss_pred             ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH----h-c---cCcEEEEEehhHHH
Confidence            999999999999999999999999999999987766432222222    2 2   78999999999974

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.39  E-value=4.6e-13  Score=99.88  Aligned_cols=125  Identities=17%  Similarity=0.109  Sum_probs=90.5

Q ss_pred             CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc--------cc
Q 031598            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF--------QS   72 (156)
Q Consensus         1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~   72 (156)
                      ||+.......++++|.|++|||||++.+...+....+.++.+...+...+.+..  .++++.||||....        +.
T Consensus       161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEm  238 (620)
T KOG1490|consen  161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEM  238 (620)
T ss_pred             CCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHH
Confidence            456677789999999999999999999987776655555554555555554444  68999999993322        11


Q ss_pred             hhhhhe-ecccEEEEEEECCC--hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           73 LGVAFY-RGADCCVLVYDVNS--MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        73 ~~~~~~-~~~~~~l~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .....+ +--.+++|+.|.+.  ..|.++....+..+..++.     +.|+|+|+||+|+...
T Consensus       239 qsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-----NK~~IlvlNK~D~m~~  296 (620)
T KOG1490|consen  239 QIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-----NKVTILVLNKIDAMRP  296 (620)
T ss_pred             HHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-----CCceEEEeecccccCc
Confidence            111111 23467888889887  4567777778888888877     7899999999999876

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.38  E-value=1.3e-12  Score=96.79  Aligned_cols=119  Identities=19%  Similarity=0.193  Sum_probs=88.5

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCC--------------CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKF--------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS   72 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   72 (156)
                      ...+|+++..-.-|||||+..|+.+.-              ...-....+.+...+...+...+++++|+||||+.+|..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            467999999999999999999986531              112233344566666666666779999999999999999


Q ss_pred             hhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        73 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      .....++=.|++++++|+.+....+. +-....-   +..    +.+-|+|+||+|.++..
T Consensus        84 EVERvl~MVDgvlLlVDA~EGpMPQT-rFVlkKA---l~~----gL~PIVVvNKiDrp~Ar  136 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGPMPQT-RFVLKKA---LAL----GLKPIVVINKIDRPDAR  136 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCCCCch-hhhHHHH---HHc----CCCcEEEEeCCCCCCCC
Confidence            99999999999999999998543332 1111111   111    67789999999999883

>smart00275 G_alpha G protein alpha subunit

Probab=99.38  E-value=3.7e-12  Score=93.46  Aligned_cols=77  Identities=13%  Similarity=0.170  Sum_probs=58.5

Q ss_pred             EEEEEEeCCCcccccchhhhheecccEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-------SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  129 (156)
                      ..+.+||++|+...+..|..++..++++++|+|+++-+       ....+.+....+...+......++|+++++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            56899999999999999999999999999999999732       11223333344444444444458999999999999


Q ss_pred             CCCC
Q 031598          130 DGGN  133 (156)
Q Consensus       130 ~~~~  133 (156)
                      ..+.
T Consensus       264 ~~~K  267 (342)
T smart00275      264 FEEK  267 (342)
T ss_pred             HHHH
Confidence            8764

Subunit of G proteins that contains the guanine nucleotide binding site

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=5.2e-12  Score=95.04  Aligned_cols=123  Identities=21%  Similarity=0.241  Sum_probs=91.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC-eEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      +..=|+++|.-.-|||||+..+-..+.........+.+..-..+..+. ..-.+.++|||||+-|..+...-..-+|.++
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            445689999999999999999998887766565555555555555431 2247999999999999999988889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceee
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV  137 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~  137 (156)
                      +|+++++.-..+.+.    .+... +..   ++|+++..||+|.++.+...+
T Consensus        84 LVVa~dDGv~pQTiE----AI~ha-k~a---~vP~iVAiNKiDk~~~np~~v  127 (509)
T COG0532          84 LVVAADDGVMPQTIE----AINHA-KAA---GVPIVVAINKIDKPEANPDKV  127 (509)
T ss_pred             EEEEccCCcchhHHH----HHHHH-HHC---CCCEEEEEecccCCCCCHHHH
Confidence            999999965444332    22111 212   899999999999997653333

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=1.3e-12  Score=96.10  Aligned_cols=140  Identities=18%  Similarity=0.238  Sum_probs=94.4

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhc--CCC--------------C------CCCCCceeeEEEEEEEEECCeEEEEEEEe
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVN--KKF--------------S------NQYKATIGADFLTKEVQFEDRLFTLQIWD   63 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~--~~~--------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D   63 (156)
                      .+...++|+..|.+|||||-..|+-  ...              .      -......+.+  +..++++..++.++|.|
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVt--sSVMqF~Y~~~~iNLLD   87 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVT--SSVMQFDYADCLVNLLD   87 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEE--eeEEEeccCCeEEeccC
Confidence            4557889999999999999998751  100              0      0112233333  44444455558899999


Q ss_pred             CCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC-ceeeeeccc
Q 031598           64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN-SRVVCFGEE  142 (156)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~e~  142 (156)
                      |||+++|..-....+..+|..++|+|+...---+.     ..+.+.|+..   ++|++-++||.|....+ .+....-|.
T Consensus        88 TPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-----~KLfeVcrlR---~iPI~TFiNKlDR~~rdP~ELLdEiE~  159 (528)
T COG4108          88 TPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-----LKLFEVCRLR---DIPIFTFINKLDREGRDPLELLDEIEE  159 (528)
T ss_pred             CCCccccchhHHHHHHhhheeeEEEecccCccHHH-----HHHHHHHhhc---CCceEEEeeccccccCChHHHHHHHHH
Confidence            99999999998999999999999999997643222     2344444444   89999999999998864 222233344


Q ss_pred             cchhhhhhccccc
Q 031598          143 GSSMVCLQRKYSL  155 (156)
Q Consensus       143 ~~~~~~~~~~~~~  155 (156)
                      +..+.|..-.||+
T Consensus       160 ~L~i~~~PitWPI  172 (528)
T COG4108         160 ELGIQCAPITWPI  172 (528)
T ss_pred             HhCcceecccccc
Confidence            4455555555553

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.35  E-value=1.9e-11  Score=81.09  Aligned_cols=62  Identities=19%  Similarity=0.289  Sum_probs=41.9

Q ss_pred             EEEEeCCCccc----ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 031598           59 LQIWDTAGQER----FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI  127 (156)
Q Consensus        59 ~~i~D~~g~~~----~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  127 (156)
                      +.|+||||-..    ....+..+++.+|++++|.+.+....-.....+.+..    ...   ...+++|.||+
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~----~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML----DPD---KSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH----TTT---CSSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh----cCC---CCeEEEEEcCC
Confidence            89999999432    2355667789999999999999865544443333333    222   33589999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.34  E-value=9.8e-12  Score=89.07  Aligned_cols=120  Identities=17%  Similarity=0.086  Sum_probs=75.3

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cchhhhheeccc
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRGAD   82 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~~   82 (156)
                      -|.++|.|++|||||++.+.+.+..--..+..+....-..+.. ...-.|.+-|.||--+-       ....-..++.|.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            4678999999999999999988754222222222222233333 22246999999992221       222334567899


Q ss_pred             EEEEEEECCChhh---HHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           83 CCVLVYDVNSMKS---FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        83 ~~l~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++.|+|++..+.   .++......++..+...  ..+.|.++|+||+|+...
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~--L~~K~~ivv~NKiD~~~~  290 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPK--LAEKPRIVVLNKIDLPLD  290 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHH--hccCceEEEEeccCCCcC
Confidence            9999999997542   34444444444433221  226799999999996554

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=4.4e-12  Score=94.46  Aligned_cols=125  Identities=22%  Similarity=0.241  Sum_probs=79.4

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc-----ccch----hh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-----FQSL----GV   75 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-----~~~~----~~   75 (156)
                      +..++|+++|+|++|||||+|.|.+.+.. -.+.+..+.+.....+++++  +.+.+.||.|..+     .+.+    ..
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~  343 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR  343 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence            34589999999999999999999988743 22234444455555566666  7899999999554     1111    12


Q ss_pred             hheecccEEEEEEECCC--hhhHHHHHHHHHHHHHhcCC--CCCCCCcEEEEEecCCCCCC
Q 031598           76 AFYRGADCCVLVYDVNS--MKSFDNLNNWREEFLIQASP--SDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        76 ~~~~~~~~~l~v~d~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+..+|++++|+|+..  -++-..+.+.+.....-+..  ......|++++.||.|+..+
T Consensus       344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~  404 (531)
T KOG1191|consen  344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK  404 (531)
T ss_pred             HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence            23567999999999943  32222233333322111100  11124689999999999876

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.34  E-value=2.6e-12  Score=94.29  Aligned_cols=113  Identities=16%  Similarity=0.244  Sum_probs=56.7

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCcee---eEEEEEEEEECCeEEEEEEEeCCCcccccchhhhh-----
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG---ADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF-----   77 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----   77 (156)
                      ...++|+|+|.+|+|||||||.|.+-...+......|   ++.....+..+.. -.+.+||.||..-.......|     
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            4568999999999999999999976443222111111   1111122222221 258999999954433333333     


Q ss_pred             eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (156)
Q Consensus        78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  129 (156)
                      +...|.++++.+..-...  . ......+.+.       +.|+++|-||+|.
T Consensus       112 ~~~yD~fiii~s~rf~~n--d-v~La~~i~~~-------gK~fyfVRTKvD~  153 (376)
T PF05049_consen  112 FYRYDFFIIISSERFTEN--D-VQLAKEIQRM-------GKKFYFVRTKVDS  153 (376)
T ss_dssp             GGG-SEEEEEESSS--HH--H-HHHHHHHHHT-------T-EEEEEE--HHH
T ss_pred             ccccCEEEEEeCCCCchh--h-HHHHHHHHHc-------CCcEEEEEecccc
Confidence            356798887765432221  1 1223333322       6799999999996

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.33  E-value=7.3e-12  Score=78.84  Aligned_cols=91  Identities=29%  Similarity=0.401  Sum_probs=65.6

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCC-CceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      +|++++|..|+|||+|+.++....+...+. ++.+                           +........+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999997666543222 2211                           333445567788999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |+..+..+++.+  |...+....+    ...|.++++||.|+.++
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k----~dl~~~~~~nk~dl~~~   92 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNK----SDLPILVGGNRDVLEEE   92 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCC----CCCcEEEEeechhhHhh
Confidence            999999988765  6655543322    25789999999999654

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.31  E-value=8.7e-11  Score=84.05  Aligned_cols=117  Identities=17%  Similarity=0.215  Sum_probs=67.6

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCC----------CCceeeEEEEEEEEECCeEEEEEEEeCCCccc-cc-----
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQY----------KATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQ-----   71 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~-----   71 (156)
                      .++|+|+|.+|+||||||+.|++.......          ..+...........-++..+.++++||||--. ..     
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999999987543321          12222233333444467778999999999110 00     


Q ss_pred             chhhhh---------------------eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           72 SLGVAF---------------------YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        72 ~~~~~~---------------------~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      .....+                     =...|+++|.++.+...--..-...++.+   ..     .+++|-|+.|+|..
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L---s~-----~vNvIPvIaKaD~l  155 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL---SK-----RVNVIPVIAKADTL  155 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH---TT-----TSEEEEEESTGGGS
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh---cc-----cccEEeEEeccccc
Confidence            000000                     12469999999987643211112223333   22     67899999999997


Q ss_pred             CC
Q 031598          131 GG  132 (156)
Q Consensus       131 ~~  132 (156)
                      ..
T Consensus       156 t~  157 (281)
T PF00735_consen  156 TP  157 (281)
T ss_dssp             -H
T ss_pred             CH
Confidence            64

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.31  E-value=5.7e-11  Score=92.21  Aligned_cols=121  Identities=17%  Similarity=0.118  Sum_probs=74.2

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCC-ceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------c---hhhh
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------S---LGVA   76 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~---~~~~   76 (156)
                      .++|+++|.+|+||||++|++++.+....... ..++..........+  ..+.++||||-....       .   ....
T Consensus       118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik~  195 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVKK  195 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence            47899999999999999999998864332221 111222122222333  679999999954321       1   1112


Q ss_pred             hee--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 FYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 ~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++.  .+|++|+|...........-..+++.+...+...-  ...+|||.|+.|....
T Consensus       196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lpp  251 (763)
T TIGR00993       196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCCC
Confidence            333  47999999877643322122244555555555433  3468999999999864

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.31  E-value=1.9e-12  Score=88.08  Aligned_cols=138  Identities=21%  Similarity=0.341  Sum_probs=87.1

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc-----chhhhheecc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-----SLGVAFYRGA   81 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----~~~~~~~~~~   81 (156)
                      ..||+++|.+|+||||+=..++.+.. .+...++.+.+.......+-+ ...+++||++|++.+-     ......++..
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            46899999999999997655553321 122233333343333333322 2689999999988442     2334567889


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhh
Q 031598           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVC  148 (156)
Q Consensus        82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~  148 (156)
                      ++++++||++..+-...+..+...+...+  .+.+...+.+..+|.|+...+.++...++.......
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll--~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~  147 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALL--QNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRR  147 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHH--hcCCcceEEEEEeechhcccchHHHHHHHHHHHHHH
Confidence            99999999998765444443333222222  122366789999999999987777666655544433

>smart00053 DYNc Dynamin, GTPase

Probab=99.30  E-value=2.4e-11  Score=84.81  Aligned_cols=69  Identities=14%  Similarity=0.104  Sum_probs=43.1

Q ss_pred             EEEEEEeCCCccc-------------ccchhhhhee-cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 031598           57 FTLQIWDTAGQER-------------FQSLGVAFYR-GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV  122 (156)
Q Consensus        57 ~~~~i~D~~g~~~-------------~~~~~~~~~~-~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~il  122 (156)
                      ..++++||||-..             ...+...+++ ..+.+++|+|+...-.-.......+.+.    ..   +.|+++
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~~---~~rti~  197 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----PQ---GERTIG  197 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----Hc---CCcEEE
Confidence            4689999999531             1234445666 4569999998865322122222222222    11   679999


Q ss_pred             EEecCCCCCC
Q 031598          123 LGNKIDVDGG  132 (156)
Q Consensus       123 v~nK~Dl~~~  132 (156)
                      |+||+|..++
T Consensus       198 ViTK~D~~~~  207 (240)
T smart00053      198 VITKLDLMDE  207 (240)
T ss_pred             EEECCCCCCc
Confidence            9999999876

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.30  E-value=4.3e-13  Score=93.42  Aligned_cols=74  Identities=26%  Similarity=0.280  Sum_probs=44.9

Q ss_pred             EEEEEEeCCCccccc------chhhhheecc--cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598           57 FTLQIWDTAGQERFQ------SLGVAFYRGA--DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID  128 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~------~~~~~~~~~~--~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  128 (156)
                      +...++|||||-+..      .+....+...  -++++++|..+..+.   ..|+.+++..+.......+|+|+|.||+|
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p---~tFMSNMlYAcSilyktklp~ivvfNK~D  192 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSP---TTFMSNMLYACSILYKTKLPFIVVFNKTD  192 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCc---hhHHHHHHHHHHHHHhccCCeEEEEeccc
Confidence            458899999976441      2222223333  466677776554332   23444444444333344899999999999


Q ss_pred             CCCCC
Q 031598          129 VDGGN  133 (156)
Q Consensus       129 l~~~~  133 (156)
                      +.+.+
T Consensus       193 v~d~~  197 (366)
T KOG1532|consen  193 VSDSE  197 (366)
T ss_pred             ccccH
Confidence            99863

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.29  E-value=1.7e-11  Score=92.87  Aligned_cols=121  Identities=13%  Similarity=0.114  Sum_probs=76.2

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCC---CCCCCceeeEEEEEEE---------------EECC------------
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKEV---------------QFED------------   54 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~---------------~~~~------------   54 (156)
                      ++..++|.++|.-..|||||+.+|.+....   .+.....+.+......               .++.            
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            456799999999999999999999865331   1111111110000000               0000            


Q ss_pred             ----eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598           55 ----RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (156)
Q Consensus        55 ----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  129 (156)
                          -...+.++|+||++.|.......+..+|++++|+|+.++ ...+.. +.+ .+...+.     -.|+++|+||+|+
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~~lg-----i~~iIVvlNKiDl  183 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVEIMK-----LKHIIILQNKIDL  183 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHHHcC-----CCcEEEEEecccc
Confidence                023689999999998877777778899999999999974 222221 111 2222222     2368999999999


Q ss_pred             CCC
Q 031598          130 DGG  132 (156)
Q Consensus       130 ~~~  132 (156)
                      .+.
T Consensus       184 v~~  186 (460)
T PTZ00327        184 VKE  186 (460)
T ss_pred             cCH
Confidence            864

>cd01882 BMS1 Bms1

Probab=99.28  E-value=3.9e-11  Score=83.44  Aligned_cols=111  Identities=18%  Similarity=0.219  Sum_probs=67.6

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .....|+++|.+|+|||||++.+.+...........+. ..  ...  ....++.++||||..   ......++.+|+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~--i~~--~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-IT--VVT--GKKRRLTFIECPNDI---NAMIDIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EE--EEe--cCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence            34577899999999999999999865211111111111 10  111  234578999999864   22234467899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF-VVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~  132 (156)
                      +++|.+....... ...+..+    ...   +.|. ++|+||+|+.++
T Consensus       109 lviDa~~~~~~~~-~~i~~~l----~~~---g~p~vi~VvnK~D~~~~  148 (225)
T cd01882         109 LLIDASFGFEMET-FEFLNIL----QVH---GFPRVMGVLTHLDLFKK  148 (225)
T ss_pred             EEEecCcCCCHHH-HHHHHHH----HHc---CCCeEEEEEeccccCCc
Confidence            9999986543222 1222222    111   4574 559999999754

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.23  E-value=4.7e-11  Score=86.75  Aligned_cols=90  Identities=11%  Similarity=0.163  Sum_probs=69.5

Q ss_pred             EEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCCh-------hhHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 031598           49 EVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM-------KSFDNLNNWREEFLIQASPSDPDNFPFV  121 (156)
Q Consensus        49 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~i  121 (156)
                      .+.+++  ..+.++|++||..-+..|..++..++++++|++.++=       +....+.+.+..+...+....-.++++|
T Consensus       189 ~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsii  266 (354)
T KOG0082|consen  189 EFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSII  266 (354)
T ss_pred             EEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEE
Confidence            344444  7789999999999999999999999999999999872       2234455556666677777767789999


Q ss_pred             EEEecCCCCCCCceeeeec
Q 031598          122 VLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus       122 lv~nK~Dl~~~~~~~~~~~  140 (156)
                      ++.||.||-.+.....+..
T Consensus       267 LFLNK~DLFeEKi~~~~~~  285 (354)
T KOG0082|consen  267 LFLNKKDLFEEKIKKVPLT  285 (354)
T ss_pred             EEeecHHHHHHHhccCchh
Confidence            9999999988755444433

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.21  E-value=1.9e-10  Score=83.58  Aligned_cols=82  Identities=21%  Similarity=0.349  Sum_probs=52.9

Q ss_pred             EEEEcCCCCChhHHHHHHhcCCCCC------CCCCceeeEEEEEE---------------EEECC-eEEEEEEEeCCCc-
Q 031598           11 VIILGDSGVGKTSLMNQYVNKKFSN------QYKATIGADFLTKE---------------VQFED-RLFTLQIWDTAGQ-   67 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~~~~------~~~~~~~~~~~~~~---------------~~~~~-~~~~~~i~D~~g~-   67 (156)
                      |+++|.+++|||||+++|.+.....      +..+..+.......               ...++ ....+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            5799999999999999999876432      11222222211100               00112 3367999999996 


Q ss_pred             ---ccccchhhh---heecccEEEEEEECCC
Q 031598           68 ---ERFQSLGVA---FYRGADCCVLVYDVNS   92 (156)
Q Consensus        68 ---~~~~~~~~~---~~~~~~~~l~v~d~~~   92 (156)
                         .....+...   .++.+|++++|+|+..
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence               333333333   4789999999999973

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.19  E-value=4e-10  Score=84.19  Aligned_cols=83  Identities=22%  Similarity=0.289  Sum_probs=54.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEE---------------------C-CeEEEEEEEeCCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF---------------------E-DRLFTLQIWDTAG   66 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~g   66 (156)
                      ++|+++|.+++|||||+++|.+........+..+.+.......+                     + .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999987654322222222222221111                     1 1235789999999


Q ss_pred             cc----cccchhhhh---eecccEEEEEEECC
Q 031598           67 QE----RFQSLGVAF---YRGADCCVLVYDVN   91 (156)
Q Consensus        67 ~~----~~~~~~~~~---~~~~~~~l~v~d~~   91 (156)
                      ..    ....+...+   ++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            32    223333334   78999999999997

>PRK09866 hypothetical protein; Provisional

Probab=99.18  E-value=5.9e-10  Score=86.46  Aligned_cols=69  Identities=28%  Similarity=0.336  Sum_probs=45.1

Q ss_pred             EEEEEEeCCCcccc-----cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           57 FTLQIWDTAGQERF-----QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        57 ~~~~i~D~~g~~~~-----~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      .++.++||||....     .......+..+|++++|+|.....+... ....+.+... .    .+.|+++|+||+|+.+
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~----K~~PVILVVNKIDl~d  303 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-G----QSVPLYVLVNKFDQQD  303 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-C----CCCCEEEEEEcccCCC
Confidence            46889999995432     2233446889999999999987543332 2223333221 1    1359999999999965

>PTZ00258 GTP-binding protein; Provisional

Probab=99.16  E-value=3.4e-10  Score=84.00  Aligned_cols=87  Identities=23%  Similarity=0.186  Sum_probs=58.3

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCe---------------EEEEEEEeCCCccc
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER   69 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~   69 (156)
                      +..-++|.++|.|++|||||+++|.+.+......|..+.+.....+...+.               ..++.++|+||-..
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            345689999999999999999999887654333344433344444443322               23589999999332


Q ss_pred             -------ccchhhhheecccEEEEEEECC
Q 031598           70 -------FQSLGVAFYRGADCCVLVYDVN   91 (156)
Q Consensus        70 -------~~~~~~~~~~~~~~~l~v~d~~   91 (156)
                             ........++.+|++++|+|+.
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                   1222334567899999999984

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.16  E-value=3.3e-10  Score=92.69  Aligned_cols=102  Identities=29%  Similarity=0.343  Sum_probs=71.1

Q ss_pred             CChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCe----------------EEEEEEEeCCCcccccchhhhheeccc
Q 031598           19 VGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------------LFTLQIWDTAGQERFQSLGVAFYRGAD   82 (156)
Q Consensus        19 ~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~D~~g~~~~~~~~~~~~~~~~   82 (156)
                      ++||||+.++.+.+.........+.+.....+..+..                ...+.+|||||++.+..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            4599999999988876655555444333333333210                013899999999999888777888899


Q ss_pred             EEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           83 CCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        83 ~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      ++++|+|+++   +.++..+.    .+. .   .   ++|+++|+||+|+..
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I~----~lk-~---~---~iPiIVViNKiDL~~  592 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAIN----ILR-Q---Y---KTPFVVAANKIDLIP  592 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHHH----HHH-H---c---CCCEEEEEECCCCcc
Confidence            9999999987   33333332    111 1   1   679999999999964

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.15  E-value=4.3e-11  Score=83.72  Aligned_cols=71  Identities=18%  Similarity=0.159  Sum_probs=37.8

Q ss_pred             EEEEEeCCCcccccchhhhhe--------ecccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598           58 TLQIWDTAGQERFQSLGVAFY--------RGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKID  128 (156)
Q Consensus        58 ~~~i~D~~g~~~~~~~~~~~~--------~~~~~~l~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  128 (156)
                      .+.++|||||.++-..+...-        ...-++++++|+....+... +..++..+.-.++.    +.|.+.|.||+|
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~----~lP~vnvlsK~D  167 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL----ELPHVNVLSKID  167 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH----TSEEEEEE--GG
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhC----CCCEEEeeeccC
Confidence            589999999988765555443        34558889999875433222 22222222222222    789999999999


Q ss_pred             CCCC
Q 031598          129 VDGG  132 (156)
Q Consensus       129 l~~~  132 (156)
                      +.++
T Consensus       168 l~~~  171 (238)
T PF03029_consen  168 LLSK  171 (238)
T ss_dssp             GS-H
T ss_pred             cccc
Confidence            9974

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=4.9e-10  Score=81.37  Aligned_cols=117  Identities=16%  Similarity=0.225  Sum_probs=77.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeE-------------------------------
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRL-------------------------------   56 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------------------------   56 (156)
                      .=|+++|+-+.||||||+.|+.++++. ...+..+++++...+..+.++                               
T Consensus        59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c  138 (532)
T KOG1954|consen   59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC  138 (532)
T ss_pred             ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence            458999999999999999999888763 224444456666665432221                               


Q ss_pred             --------EEEEEEeCCCccc-----------ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCC
Q 031598           57 --------FTLQIWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN  117 (156)
Q Consensus        57 --------~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (156)
                              -.++++||||.-.           |.....-+...||.++++||....+--.+....+..+    +..   .
T Consensus       139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL----kG~---E  211 (532)
T KOG1954|consen  139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL----KGH---E  211 (532)
T ss_pred             hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh----hCC---c
Confidence                    1289999999332           2233334567899999999988755333333334444    222   2


Q ss_pred             CcEEEEEecCCCCCC
Q 031598          118 FPFVVLGNKIDVDGG  132 (156)
Q Consensus       118 ~p~ilv~nK~Dl~~~  132 (156)
                      -.+-+|.||+|..+.
T Consensus       212 dkiRVVLNKADqVdt  226 (532)
T KOG1954|consen  212 DKIRVVLNKADQVDT  226 (532)
T ss_pred             ceeEEEeccccccCH
Confidence            257889999999876

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.12  E-value=5e-10  Score=80.10  Aligned_cols=99  Identities=22%  Similarity=0.323  Sum_probs=69.0

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEE--ECCeEEEEEEEeCCCcccccchhhhheecc----
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQ--FEDRLFTLQIWDTAGQERFQSLGVAFYRGA----   81 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~----   81 (156)
                      --+|+|+|..++||||||.+|.+.+.   ..+..+..|.+..++  ..+...++.+|-..|...........+...    
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e~---~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae  128 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSET---VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE  128 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhcccc---cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence            36899999999999999999998772   233334444444433  233446899999999877777766666543    


Q ss_pred             cEEEEEEECCChh-hHHHHHHHHHHHHHh
Q 031598           82 DCCVLVYDVNSMK-SFDNLNNWREEFLIQ  109 (156)
Q Consensus        82 ~~~l~v~d~~~~~-~~~~~~~~~~~~~~~  109 (156)
                      -.++++.|+++|. -++.+..|..-++++
T Consensus       129 tlviltasms~Pw~~lesLqkWa~Vl~eh  157 (473)
T KOG3905|consen  129 TLVILTASMSNPWTLLESLQKWASVLREH  157 (473)
T ss_pred             eEEEEEEecCCcHHHHHHHHHHHHHHHHH
Confidence            4788889999994 455566666655543

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.11  E-value=4.3e-10  Score=82.63  Aligned_cols=83  Identities=24%  Similarity=0.143  Sum_probs=55.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeE---------------EEEEEEeCCCcccc---
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL---------------FTLQIWDTAGQERF---   70 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~---   70 (156)
                      ++|.++|.|++|||||.+++.+.+......+..+.+.....+.+.+..               ..+.++|+||-..-   
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            689999999999999999999877432222333333333333333321               25899999993321   


Q ss_pred             ----cchhhhheecccEEEEEEECC
Q 031598           71 ----QSLGVAFYRGADCCVLVYDVN   91 (156)
Q Consensus        71 ----~~~~~~~~~~~~~~l~v~d~~   91 (156)
                          .......++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence                122333467899999999985

>cd01900 YchF YchF subfamily

Probab=99.08  E-value=3.4e-10  Score=80.53  Aligned_cols=81  Identities=20%  Similarity=0.152  Sum_probs=53.9

Q ss_pred             EEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCe---------------EEEEEEEeCCCccc------
Q 031598           11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER------   69 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~------   69 (156)
                      |+++|.|++|||||.+++.+.+......+..+.+.....+.+.+.               ...+.++|+||-..      
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            578999999999999999988764332333333344444444432               13599999999332      


Q ss_pred             -ccchhhhheecccEEEEEEECC
Q 031598           70 -FQSLGVAFYRGADCCVLVYDVN   91 (156)
Q Consensus        70 -~~~~~~~~~~~~~~~l~v~d~~   91 (156)
                       ........++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence             1122233457899999999974

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=8.7e-10  Score=86.05  Aligned_cols=120  Identities=18%  Similarity=0.220  Sum_probs=89.9

Q ss_pred             cccceeEEEEEEcCCCCChhHHHHHHhcCCC--------------CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031598            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKF--------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (156)
Q Consensus         3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (156)
                      +......+++++..-.-|||||+..|...+-              .+....+.+.+-....+.+-.+++.++++|+|||.
T Consensus         4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv   83 (887)
T KOG0467|consen    4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV   83 (887)
T ss_pred             CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence            3455678999999999999999999874421              12334444555555555555567899999999999


Q ss_pred             cccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        69 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      +|........+-+|+++.++|+...---+...-.++.+..        +..+++|+||+|..
T Consensus        84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvinkidrl  137 (887)
T KOG0467|consen   84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINKIDRL  137 (887)
T ss_pred             chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEehhhhH
Confidence            9999999999999999999999986554554444444432        56789999999953

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=5.5e-10  Score=84.92  Aligned_cols=131  Identities=22%  Similarity=0.267  Sum_probs=88.2

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCC-------------------------------CCCCCCCceeeEEEEEEEEEC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK-------------------------------FSNQYKATIGADFLTKEVQFE   53 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   53 (156)
                      +...++++++|...+|||||+-+++..-                               ..++.....+.+  .....++
T Consensus       174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~--v~~~~fe  251 (603)
T KOG0458|consen  174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMD--VKTTWFE  251 (603)
T ss_pred             CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEE--eeeEEEe
Confidence            3456999999999999999998876320                               012333333333  4444455


Q ss_pred             CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh---hHHH--HHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKID  128 (156)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  128 (156)
                      .....++|.|.||+..|-.....-...+|+.++|+|++...   .|+.  ..+.+..+.+.+.     -..+++++||+|
T Consensus       252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-----i~qlivaiNKmD  326 (603)
T KOG0458|consen  252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-----ISQLIVAINKMD  326 (603)
T ss_pred             cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-----cceEEEEeeccc
Confidence            66678999999999888877777778899999999999742   2321  1223334444444     235899999999


Q ss_pred             CCCCCceeeeeccccc
Q 031598          129 VDGGNSRVVCFGEEGS  144 (156)
Q Consensus       129 l~~~~~~~~~~~e~~~  144 (156)
                      +.+=  .+..+++++.
T Consensus       327 ~V~W--sq~RF~eIk~  340 (603)
T KOG0458|consen  327 LVSW--SQDRFEEIKN  340 (603)
T ss_pred             ccCc--cHHHHHHHHH
Confidence            9986  3444554443

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.03  E-value=5.7e-09  Score=75.78  Aligned_cols=118  Identities=15%  Similarity=0.254  Sum_probs=72.6

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCC----------CCCceeeEEEEEEEEECCeEEEEEEEeCCCccc-------
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQ----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------   69 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------   69 (156)
                      -.++|+++|++|+|||||+|.|++......          ..++.........+.-++-..+++++||||--+       
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            358999999999999999999997743322          123333333344444466678999999999110       


Q ss_pred             c-------cchhhhhe--------------ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598           70 F-------QSLGVAFY--------------RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID  128 (156)
Q Consensus        70 ~-------~~~~~~~~--------------~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  128 (156)
                      +       ......++              ..+|+++|.+..+...- ..+.  ...|.+...     .+.+|-|+.|+|
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l-~~~D--Ie~Mk~ls~-----~vNlIPVI~KaD  173 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGL-KPLD--IEAMKRLSK-----RVNLIPVIAKAD  173 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCC-CHHH--HHHHHHHhc-----ccCeeeeeeccc
Confidence            0       11111111              23689999988665321 2211  222323323     667999999999


Q ss_pred             CCCC
Q 031598          129 VDGG  132 (156)
Q Consensus       129 l~~~  132 (156)
                      ....
T Consensus       174 ~lT~  177 (373)
T COG5019         174 TLTD  177 (373)
T ss_pred             cCCH
Confidence            9765

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.00  E-value=4.9e-09  Score=79.67  Aligned_cols=94  Identities=24%  Similarity=0.400  Sum_probs=64.1

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC--CeEEEEEEEeCCCcccccchhhhheecc---
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRGA---   81 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~---   81 (156)
                      ...+|+|+|..++||||||.+|.+.+   .+.++.+..|....+.-.  +...++++|-..|...+..+....+...   
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~  100 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP  100 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence            34789999999999999999997654   234455555544443322  2235789999998777776666666432   


Q ss_pred             -cEEEEEEECCChhhHH-HHHHHH
Q 031598           82 -DCCVLVYDVNSMKSFD-NLNNWR  103 (156)
Q Consensus        82 -~~~l~v~d~~~~~~~~-~~~~~~  103 (156)
                       -.++||+|.+.|..+- .+..|.
T Consensus       101 ~t~vvIvlDlS~PW~~~esL~~W~  124 (472)
T PF05783_consen  101 NTLVVIVLDLSKPWNIMESLEKWL  124 (472)
T ss_pred             ceEEEEEecCCChHHHHHHHHHHH
Confidence             4889999999986543 244433

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK13768 GTPase; Provisional

Probab=98.98  E-value=3.6e-09  Score=74.85  Aligned_cols=70  Identities=19%  Similarity=0.171  Sum_probs=43.0

Q ss_pred             EEEEEeCCCcccc---cchhhhhe---ec--ccEEEEEEECCChhhHHHHH--HHHHHHHHhcCCCCCCCCcEEEEEecC
Q 031598           58 TLQIWDTAGQERF---QSLGVAFY---RG--ADCCVLVYDVNSMKSFDNLN--NWREEFLIQASPSDPDNFPFVVLGNKI  127 (156)
Q Consensus        58 ~~~i~D~~g~~~~---~~~~~~~~---~~--~~~~l~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~  127 (156)
                      .+.+||+||+.+.   ...+..++   ..  .+++++++|+..........  .|....... ..    +.|+++|+||+
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~----~~~~i~v~nK~  172 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RL----GLPQIPVLNKA  172 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-Hc----CCCEEEEEEhH
Confidence            5899999997653   22332222   22  78999999997644333221  122111111 11    67999999999


Q ss_pred             CCCCC
Q 031598          128 DVDGG  132 (156)
Q Consensus       128 Dl~~~  132 (156)
                      |+.+.
T Consensus       173 D~~~~  177 (253)
T PRK13768        173 DLLSE  177 (253)
T ss_pred             hhcCc
Confidence            99876

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.98  E-value=5.4e-10  Score=69.24  Aligned_cols=100  Identities=23%  Similarity=0.222  Sum_probs=65.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchh----hhheecccEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG----VAFYRGADCC   84 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~~~~   84 (156)
                      -|++++|..|||||||.+.+.+...-.  ..+       .-+++++..    .+||||.-.-...|    ......+|++
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~ly--kKT-------QAve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi   68 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTLY--KKT-------QAVEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVI   68 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhhh--ccc-------ceeeccCcc----ccCCchhhhhhhHHHHHHHHHhhcccee
Confidence            478999999999999999999876321  111       122333321    45999943333333    3445778999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|-.++++++.-. .    .+..      .-..|+|=|.||.|+.++
T Consensus        69 ~~v~~and~~s~f~-p----~f~~------~~~k~vIgvVTK~DLaed  105 (148)
T COG4917          69 IYVHAANDPESRFP-P----GFLD------IGVKKVIGVVTKADLAED  105 (148)
T ss_pred             eeeecccCccccCC-c----cccc------ccccceEEEEecccccch
Confidence            99999998864221 1    1111      115579999999999964

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=9.7e-09  Score=74.97  Aligned_cols=116  Identities=17%  Similarity=0.301  Sum_probs=70.5

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCC---------CCCceeeEEEEEEEEECCeEEEEEEEeCCCcc-------cc-
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQ---------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-------RF-   70 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~-   70 (156)
                      .++++++|.+|.|||||||.|+.......         ...+...........-++-..+++++||||--       .+ 
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            48999999999999999999887643321         11222223333333345666799999999910       01 


Q ss_pred             ------cchhhhhe-------------ecccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           71 ------QSLGVAFY-------------RGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        71 ------~~~~~~~~-------------~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                            ......++             ..+|+++|.+......- ..+ ..+++.+   ..     .+++|-|+.|+|..
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL-~p~Di~~Mk~l---~~-----~vNiIPVI~KaD~l  171 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGL-KPLDIEFMKKL---SK-----KVNLIPVIAKADTL  171 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCC-cHhhHHHHHHH---hc-----cccccceeeccccC
Confidence                  01111111             25789999988765421 111 2223332   22     67889999999998


Q ss_pred             CC
Q 031598          131 GG  132 (156)
Q Consensus       131 ~~  132 (156)
                      ..
T Consensus       172 T~  173 (366)
T KOG2655|consen  172 TK  173 (366)
T ss_pred             CH
Confidence            75

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.95  E-value=1.3e-08  Score=75.63  Aligned_cols=25  Identities=12%  Similarity=0.376  Sum_probs=22.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..+-|.|+|+.++||||||++|.+.
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q   40 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMEL   40 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhh
Confidence            3578999999999999999999987

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=7e-09  Score=74.96  Aligned_cols=127  Identities=21%  Similarity=0.134  Sum_probs=77.4

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCC-------CCCCCCCceeeEEEEEEEE-------ECCeEEEEEEEeCCCccccc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKK-------FSNQYKATIGADFLTKEVQ-------FEDRLFTLQIWDTAGQERFQ   71 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~-------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~D~~g~~~~~   71 (156)
                      +..+++.++|.-.||||||.+++..-.       .++......+.+..-..+.       ..++..++.++|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            345999999999999999999986321       1221122222222222221       13455789999999997665


Q ss_pred             chhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598           72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus        72 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  140 (156)
                      .....-..-.|..++|+|+...-.-+..+-  .-+-+.+      -...++|+||.|+..+.+|+...+
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEc--Liig~~~------c~klvvvinkid~lpE~qr~ski~  145 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAEC--LIIGELL------CKKLVVVINKIDVLPENQRASKIE  145 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchh--hhhhhhh------ccceEEEEeccccccchhhhhHHH
Confidence            555555566799999999987543232211  1111222      235788999999887754544333

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.93  E-value=3.5e-09  Score=68.46  Aligned_cols=54  Identities=30%  Similarity=0.378  Sum_probs=38.2

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (156)
                      +++++|.+|+|||||+|++.+...... ....+.+.....+..++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            799999999999999999998775422 22223333344444443   5789999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.91  E-value=5.3e-09  Score=69.81  Aligned_cols=55  Identities=29%  Similarity=0.436  Sum_probs=39.6

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (156)
                      .++++++|.+++|||||+|++.+...... .+..+.+.....+..+.   .+.++||||
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeCC---CEEEEECcC
Confidence            47999999999999999999998765332 33344444444444332   588999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.91  E-value=1.5e-08  Score=69.81  Aligned_cols=115  Identities=17%  Similarity=0.272  Sum_probs=66.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCC---------CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc----------
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSN---------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------   68 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------   68 (156)
                      .++|+|+|.+|.|||||+++++..+..+         ....+.........+.-++-..+++++||||--          
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            3899999999999999999998654322         111222222222333345666889999999911          


Q ss_pred             --------cccchhhh--------he--ecccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598           69 --------RFQSLGVA--------FY--RGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (156)
Q Consensus        69 --------~~~~~~~~--------~~--~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  129 (156)
                              ++......        .+  ..++.+++.+..+... +..+ .++++.+.+        -..++-|+.|+|-
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt~--------vvNvvPVIakaDt  196 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLTE--------VVNVVPVIAKADT  196 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHhh--------hheeeeeEeeccc
Confidence                    11111111        11  1357777777666432 2222 234444432        3468888999997


Q ss_pred             CC
Q 031598          130 DG  131 (156)
Q Consensus       130 ~~  131 (156)
                      .-
T Consensus       197 lT  198 (336)
T KOG1547|consen  197 LT  198 (336)
T ss_pred             cc
Confidence            53

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.90  E-value=4.7e-08  Score=67.95  Aligned_cols=98  Identities=17%  Similarity=0.199  Sum_probs=70.2

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cchhhhhee
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYR   79 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~   79 (156)
                      ..-+|+++|-|++|||||+..+...+...-.....+.++....+++++  ..+++.|.||.-+-       .....+..+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence            347999999999999999999987664433334444566667777777  67999999993322       344455678


Q ss_pred             cccEEEEEEECCChhhHHH-HHHHHHHH
Q 031598           80 GADCCVLVYDVNSMKSFDN-LNNWREEF  106 (156)
Q Consensus        80 ~~~~~l~v~d~~~~~~~~~-~~~~~~~~  106 (156)
                      .+|.+++|.|+..++.-.. +...++.+
T Consensus       139 taDlilMvLDatk~e~qr~~le~ELe~v  166 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREILEKELEAV  166 (364)
T ss_pred             cccEEEEEecCCcchhHHHHHHHHHHHh
Confidence            8999999999998765333 34444444

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=6.4e-09  Score=81.36  Aligned_cols=117  Identities=23%  Similarity=0.183  Sum_probs=78.0

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC----------------CeEEEEEEEeCCCcccc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAGQERF   70 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g~~~~   70 (156)
                      +..=|+|+|.-.+|||-|+..+.+.++......+.+.......+...                -.-..+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            34568999999999999999998876654333332211111111110                01124789999999999


Q ss_pred             cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      ..........||.+|+|+|+...---+.+. .+..++    ..   ++|+|+.+||+|..=
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqtiE-Si~lLR----~r---ktpFivALNKiDRLY  606 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIE-SINLLR----MR---KTPFIVALNKIDRLY  606 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchhH-HHHHHH----hc---CCCeEEeehhhhhhc
Confidence            999999999999999999998642222221 122221    11   889999999999853

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=7.2e-09  Score=71.49  Aligned_cols=121  Identities=18%  Similarity=0.261  Sum_probs=76.8

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc---hhhhheecccEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---LGVAFYRGADCCV   85 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~l   85 (156)
                      .+|+++|...|||||+..-.+ .+..+...-....+.....-++.+.-+.|.+||.||+..+-.   -....++++.+++
T Consensus        28 p~ilLMG~rRsGKsSI~KVVF-hkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVF-HKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             ceEEEEeecccCcchhhheee-eccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            559999999999999554444 443333222222221111122333446899999999876632   2334568999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      +|+|+.+.- .+.+..+...+.+.++-  .+++.+-++++|+|-..++
T Consensus       107 fvIDaQddy-~eala~L~~~v~raykv--Np~in~EVfiHKvDGLsdd  151 (347)
T KOG3887|consen  107 FVIDAQDDY-MEALARLHMTVERAYKV--NPNINFEVFIHKVDGLSDD  151 (347)
T ss_pred             EEEechHHH-HHHHHHHHHHhhheeec--CCCceEEEEEEeccCCchh
Confidence            999988643 34455555555444432  3477888999999988763

>cd01858 NGP_1 NGP-1

Probab=98.88  E-value=8.6e-09  Score=67.80  Aligned_cols=56  Identities=21%  Similarity=0.318  Sum_probs=37.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (156)
                      ...+|+++|.+|+|||||+|++.+...... .+..+.+.....+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV-APIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceee-CCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            357899999999999999999998664322 23333333333333322   367999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=1.5e-09  Score=80.07  Aligned_cols=119  Identities=20%  Similarity=0.266  Sum_probs=92.9

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCC--------CCC--------CCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKK--------FSN--------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (156)
                      .+..+|.++..-.+||||.-.+++...        ...        ......+.+..+..+.++.++++++++||||+.+
T Consensus        35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd  114 (753)
T KOG0464|consen   35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD  114 (753)
T ss_pred             hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence            446889999999999999988876321        000        0012334567777788899999999999999999


Q ss_pred             ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        70 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |......+++.-|+++.|||.+-...-+.+.-|++.        ...++|-+.++||+|....
T Consensus       115 f~leverclrvldgavav~dasagve~qtltvwrqa--------dk~~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA--------DKFKIPAHCFINKMDKLAA  169 (753)
T ss_pred             EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc--------cccCCchhhhhhhhhhhhh
Confidence            999999999999999999999987666666666653        2238899999999998765

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.84  E-value=8.2e-09  Score=73.92  Aligned_cols=126  Identities=16%  Similarity=0.139  Sum_probs=77.6

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc--ccchhh------hh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLGV------AF   77 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~------~~   77 (156)
                      .+..-|.++|..+|||||||+.|..........-..+-+......+.+++. .+.+.||.|--.  ......      ..
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLee  254 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLEE  254 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence            445678999999999999999999766554444444444444444444443 567889999211  111111      12


Q ss_pred             eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ...+|.++.|.|++.|..-+.......-+...--........++=|-||.|....
T Consensus       255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~  309 (410)
T KOG0410|consen  255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED  309 (410)
T ss_pred             HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc
Confidence            3568999999999999764433333333322211112223446778899998765

>cd01856 YlqF YlqF

Probab=98.80  E-value=2.1e-08  Score=66.85  Aligned_cols=57  Identities=21%  Similarity=0.313  Sum_probs=40.2

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (156)
                      ..++++++|.+++|||||++++.+...... ....+.+.....+.++   ..+.++||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            347899999999999999999998765322 3333344444444443   35789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01855 YqeH YqeH

Probab=98.76  E-value=2e-08  Score=68.03  Aligned_cols=55  Identities=22%  Similarity=0.404  Sum_probs=37.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCC-------CCCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSN-------QYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (156)
                      .+++++|.+|+|||||+|+|.+.....       ......+++........+.   .+.++||||
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            579999999999999999999754311       1122233444444454433   478999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.76  E-value=3.6e-08  Score=70.65  Aligned_cols=57  Identities=26%  Similarity=0.427  Sum_probs=40.4

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (156)
                      +.++++++|.+++|||||+|++.+...... ....+.+.....+....   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            458899999999999999999998764332 22333444444444432   4789999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.75  E-value=5.4e-08  Score=70.13  Aligned_cols=59  Identities=24%  Similarity=0.406  Sum_probs=41.4

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (156)
                      ...++++++|.+++||||++|++.+.+.... .+..+.+.....+..+.   .+.++||||..
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            3458999999999999999999998765332 33334444444444333   57899999954

>TIGR00092 GTP-binding protein YchF

Probab=98.73  E-value=6.5e-08  Score=71.37  Aligned_cols=84  Identities=21%  Similarity=0.056  Sum_probs=57.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCe---------------EEEEEEEeCCCccc---
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER---   69 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~---   69 (156)
                      +++.++|.|++|||||.+.+.+... .....|..+.......+.+++.               ...+.+.|.||-..   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998875 3222233322333333444332               23688999999332   


Q ss_pred             ----ccchhhhheecccEEEEEEECCC
Q 031598           70 ----FQSLGVAFYRGADCCVLVYDVNS   92 (156)
Q Consensus        70 ----~~~~~~~~~~~~~~~l~v~d~~~   92 (156)
                          ........++.+|+++.|+++.+
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence                33345556789999999999853

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=4.5e-08  Score=75.02  Aligned_cols=113  Identities=12%  Similarity=0.196  Sum_probs=71.7

Q ss_pred             cccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCC-CceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecc
Q 031598            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA   81 (156)
Q Consensus         3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (156)
                      ....+++=++|+|++|+||||||..|..+-....-. ..-+.+      -..+...+++++.+|..  ..++ ....+-+
T Consensus        64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT------vvsgK~RRiTflEcp~D--l~~m-iDvaKIa  134 (1077)
T COG5192          64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT------VVSGKTRRITFLECPSD--LHQM-IDVAKIA  134 (1077)
T ss_pred             ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE------EeecceeEEEEEeChHH--HHHH-HhHHHhh
Confidence            344556778899999999999999987553221111 111111      12456678999999942  3333 3345678


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG  132 (156)
Q Consensus        82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~  132 (156)
                      |.+++++|.+-.-..+.+ +++.-+    ...   +.| ++-|+|+.|+...
T Consensus       135 DLVlLlIdgnfGfEMETm-EFLnil----~~H---GmPrvlgV~ThlDlfk~  178 (1077)
T COG5192         135 DLVLLLIDGNFGFEMETM-EFLNIL----ISH---GMPRVLGVVTHLDLFKN  178 (1077)
T ss_pred             heeEEEeccccCceehHH-HHHHHH----hhc---CCCceEEEEeecccccC
Confidence            999999999876544443 222222    222   334 7789999999875

>cd01859 MJ1464 MJ1464

Probab=98.72  E-value=6.3e-08  Score=63.57  Aligned_cols=56  Identities=23%  Similarity=0.283  Sum_probs=38.6

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (156)
                      ...+++++|.+++||||+++++.+.... ...++.+.+.....+..+.   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            3578899999999999999999976532 2344444443333222222   688999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.70  E-value=1.1e-07  Score=72.68  Aligned_cols=121  Identities=17%  Similarity=0.260  Sum_probs=75.5

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCC------------------------------------------------
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSN------------------------------------------------   35 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~------------------------------------------------   35 (156)
                      ..+...+|+|+|+..+||||.+..+...+..+                                                
T Consensus       304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~  383 (980)
T KOG0447|consen  304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI  383 (980)
T ss_pred             ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence            34556899999999999999999886543210                                                


Q ss_pred             --------CCCCceeeEEEEEEEEECCeE-EEEEEEeCCC-------------cccccchhhhheecccEEEEEEECCCh
Q 031598           36 --------QYKATIGADFLTKEVQFEDRL-FTLQIWDTAG-------------QERFQSLGVAFYRGADCCVLVYDVNSM   93 (156)
Q Consensus        36 --------~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~g-------------~~~~~~~~~~~~~~~~~~l~v~d~~~~   93 (156)
                              ....+  ....+..+++++.+ -+..++|.||             -+....+..+++.+.+++++|+---.-
T Consensus       384 E~RMr~sVr~GkT--VSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV  461 (980)
T KOG0447|consen  384 ELRMRKNVKEGCT--VSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV  461 (980)
T ss_pred             HHHHHhcccCCcc--cccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc
Confidence                    00111  11112222333322 3688999999             233456777889999999999854433


Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           94 KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +.   -+.....+...+.   +.+...|+|.||+|+.++
T Consensus       462 DA---ERSnVTDLVsq~D---P~GrRTIfVLTKVDlAEk  494 (980)
T KOG0447|consen  462 DA---ERSIVTDLVSQMD---PHGRRTIFVLTKVDLAEK  494 (980)
T ss_pred             ch---hhhhHHHHHHhcC---CCCCeeEEEEeecchhhh
Confidence            22   2222223333333   337789999999999876

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.70  E-value=1.2e-07  Score=79.79  Aligned_cols=111  Identities=21%  Similarity=0.297  Sum_probs=67.1

Q ss_pred             EEEEcCCCCChhHHHHHHhcCCCCCCCC------CceeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccchhhh
Q 031598           11 VIILGDSGVGKTSLMNQYVNKKFSNQYK------ATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVA   76 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~   76 (156)
                      .+|+|++|+||||+|..- +.+++-...      ...+.+. ...+-+.+   .-.++||+|..        .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence            489999999999999887 333322110      0111111 11111222   45689999922        22344665


Q ss_pred             he---------ecccEEEEEEECCChhh-----H----HHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           77 FY---------RGADCCVLVYDVNSMKS-----F----DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        77 ~~---------~~~~~~l~v~d~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      ++         +..+++|+++|+.+.-.     .    ..++..++++...+..    ..||.+|.||+|+.
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~----~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA----RFPVYLVLTKADLL  256 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC----CCCEEEEEecchhh
Confidence            55         34799999999987321     1    2234445555555554    89999999999987

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.67  E-value=6.9e-08  Score=70.57  Aligned_cols=61  Identities=23%  Similarity=0.360  Sum_probs=45.0

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (156)
                      .+..++.|+|-+++||||+||+|.+.... ...+..|.+.....+....   .+.++||||....
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii~~  190 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDD---GIYLLDTPGIIPP  190 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCC---CeEEecCCCcCCC
Confidence            34578999999999999999999988753 2344446666566665555   3889999995433

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=2.5e-08  Score=70.64  Aligned_cols=121  Identities=18%  Similarity=0.180  Sum_probs=80.1

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcC----------CC----CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNK----------KF----SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (156)
                      .++..||..+|.-.-|||||...+...          .+    ........+.+.......+.......--+|+||+.+|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence            355799999999999999998776421          00    0112233445555666666555556777899999988


Q ss_pred             cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCC
Q 031598           71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGN  133 (156)
Q Consensus        71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~  133 (156)
                      -.....-....|+.++|+.+.+....+.-.  +-.+.+..      +.| ++++.||+|+.++.
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpmPqTrE--HiLlarqv------Gvp~ivvflnK~Dmvdd~  144 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPMPQTRE--HILLARQV------GVPYIVVFLNKVDMVDDE  144 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCCCcchh--hhhhhhhc------CCcEEEEEEecccccCcH
Confidence            766666667789999999999854333211  11121222      555 67888999999863

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.65  E-value=2.6e-08  Score=65.41  Aligned_cols=60  Identities=27%  Similarity=0.316  Sum_probs=33.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCC------CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (156)
                      -.++++|++|+|||||||.|.+....      ........++.....+..++.   ..++||||...+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence            46799999999999999999976321      111222223333444445442   4678999965443

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.65  E-value=1.8e-07  Score=68.48  Aligned_cols=62  Identities=13%  Similarity=0.142  Sum_probs=40.0

Q ss_pred             EEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++.+.++||+|..+....   ....+|.++++.+....+..+....   .+..         ..-++|+||+|+...
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E---------~aDIiVVNKaDl~~~  209 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME---------LADLIVINKADGDNK  209 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh---------hhheEEeehhcccch
Confidence            467899999996643333   3566999999976454544443321   1221         123899999999865

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.62  E-value=1.3e-07  Score=62.00  Aligned_cols=57  Identities=26%  Similarity=0.408  Sum_probs=37.4

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (156)
                      ....+++++|.+++|||||+|++.+...... ....+++........+   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~-~~~~~~t~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKV-GNVPGTTTSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccc-cCCCCcccceEEEEec---CCEEEEECCC
Confidence            3458899999999999999999998653221 1111222222233332   3588999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.62  E-value=2.2e-07  Score=67.39  Aligned_cols=62  Identities=23%  Similarity=0.262  Sum_probs=38.1

Q ss_pred             EEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++.+.|+||+|.....   ......+|.++++-.....   .++......+.         ..|.++|+||+|+...
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l~---------~~~~ivv~NK~Dl~~~  187 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGLM---------EIADIYVVNKADGEGA  187 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHHh---------hhccEEEEEcccccch
Confidence            4678999999954222   2245567877777443322   33332222221         5678999999999865

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=3e-07  Score=67.28  Aligned_cols=85  Identities=21%  Similarity=0.128  Sum_probs=59.3

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC----------------CeEEEEEEEeCCC-----
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAG-----   66 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g-----   66 (156)
                      .+++.++|.|++|||||.|.+.......-..|..+.+.........                -....+.++|..|     
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            4789999999999999999999776432223333333333332221                1235689999988     


Q ss_pred             --cccccchhhhheecccEEEEEEECCC
Q 031598           67 --QERFQSLGVAFYRGADCCVLVYDVNS   92 (156)
Q Consensus        67 --~~~~~~~~~~~~~~~~~~l~v~d~~~   92 (156)
                        .+...+..-..++.+|+++.|+++..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence              44556666677799999999999983

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.60  E-value=2.8e-07  Score=66.51  Aligned_cols=88  Identities=23%  Similarity=0.201  Sum_probs=64.3

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC---------------eEEEEEEEeCCC---
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED---------------RLFTLQIWDTAG---   66 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g---   66 (156)
                      ....+++.++|.|++|||||.|.+.+........|..+.+.....+...+               .+..++++|+.|   
T Consensus        17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            34568999999999999999999998877655566666555555544322               235689999888   


Q ss_pred             ----cccccchhhhheecccEEEEEEECCC
Q 031598           67 ----QERFQSLGVAFYRGADCCVLVYDVNS   92 (156)
Q Consensus        67 ----~~~~~~~~~~~~~~~~~~l~v~d~~~   92 (156)
                          .....+..-..++.+|+++-|+++..
T Consensus        97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             CcccCcCchHHHHHhhhhccceeEEEEecC
Confidence                33344555556788999999998874

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=5.7e-08  Score=74.62  Aligned_cols=119  Identities=23%  Similarity=0.239  Sum_probs=85.0

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCC-----CCCCC-----------CCceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKK-----FSNQY-----------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~-----~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (156)
                      +..+|.+...-.+||||+-++++...     .....           ....+.+..+.-....+..++++++||||+-+|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            45788899999999999998876321     11100           111223333433444555789999999999999


Q ss_pred             cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      .......++..|+.++++|......-+...-|.+.- ++       +.|.+.++||+|....+
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~-ry-------~vP~i~FiNKmDRmGa~  172 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMK-RY-------NVPRICFINKMDRMGAS  172 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhhHHHHHHHH-hc-------CCCeEEEEehhhhcCCC
Confidence            999999999999999999988765445444454432 21       78999999999998763

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.60  E-value=1.3e-07  Score=66.16  Aligned_cols=77  Identities=13%  Similarity=0.136  Sum_probs=53.4

Q ss_pred             EEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-------SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID  128 (156)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  128 (156)
                      ..+|+.+|++|+.+-+..|..++....++++|+.++.-.       +-..+++.+..+.+.-...-...+.+|++.||.|
T Consensus       201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD  280 (379)
T KOG0099|consen  201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  280 (379)
T ss_pred             ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence            367999999999999999999999999999999988621       1122222222222211111112668999999999


Q ss_pred             CCCC
Q 031598          129 VDGG  132 (156)
Q Consensus       129 l~~~  132 (156)
                      +..+
T Consensus       281 llae  284 (379)
T KOG0099|consen  281 LLAE  284 (379)
T ss_pred             HHHH
Confidence            9765

>PRK12288 GTPase RsgA; Reviewed

Probab=98.59  E-value=1.6e-07  Score=69.24  Aligned_cols=58  Identities=24%  Similarity=0.298  Sum_probs=37.2

Q ss_pred             EEEEcCCCCChhHHHHHHhcCCCCCC------CCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031598           11 VIILGDSGVGKTSLMNQYVNKKFSNQ------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (156)
                      ++++|.+|+|||||||+|.+......      ......++.....+.+++.   ..++||||...+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            68999999999999999997643211      1112223333444444433   2489999976665

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=6.9e-07  Score=69.63  Aligned_cols=120  Identities=24%  Similarity=0.340  Sum_probs=73.6

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC-CCc-------------------------------------------
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KAT-------------------------------------------   40 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-~~~-------------------------------------------   40 (156)
                      .+...||++.|..++||||++|+++..+.-+.. .++                                           
T Consensus       106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~  185 (749)
T KOG0448|consen  106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD  185 (749)
T ss_pred             hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence            345689999999999999999999876542110 000                                           


Q ss_pred             eeeEEEEEEEEECCeE----EEEEEEeCCC---cccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCC
Q 031598           41 IGADFLTKEVQFEDRL----FTLQIWDTAG---QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS  113 (156)
Q Consensus        41 ~~~~~~~~~~~~~~~~----~~~~i~D~~g---~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~  113 (156)
                      .+.......+..++..    -.+.++|.||   ..+...-...+...+|++|+|.++.+..+..+- .++..    ....
T Consensus       186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~----vs~~  260 (749)
T KOG0448|consen  186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHK----VSEE  260 (749)
T ss_pred             cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHH----hhcc
Confidence            0000001111111100    1368889999   334455566777889999999999887654443 22222    2222


Q ss_pred             CCCCCcEEEEEecCCCCCC
Q 031598          114 DPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus       114 ~~~~~p~ilv~nK~Dl~~~  132 (156)
                         +..+.++-||.|....
T Consensus       261 ---KpniFIlnnkwDasas  276 (749)
T KOG0448|consen  261 ---KPNIFILNNKWDASAS  276 (749)
T ss_pred             ---CCcEEEEechhhhhcc
Confidence               3457888899999876

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.57  E-value=9.8e-08  Score=67.12  Aligned_cols=115  Identities=17%  Similarity=0.193  Sum_probs=69.6

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCC-ceeeEEEEEEEEECCeEEEEEEEeCCC----------cccccch
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-TIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSL   73 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~   73 (156)
                      +.+..+++++|.+++|||+|++.+...+....... ..+.+.....+....   .+.++|.||          ..++..+
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence            35568999999999999999999987765433332 444444444444333   688899999          1222333


Q ss_pred             hhhheecc---cEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           74 GVAFYRGA---DCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        74 ~~~~~~~~---~~~l~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ...++-..   --+++++|++-+-.-..  ...|..       ..   ++|+.+|.||||...+
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g-------e~---~VP~t~vfTK~DK~k~  263 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLG-------EN---NVPMTSVFTKCDKQKK  263 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHh-------hc---CCCeEEeeehhhhhhh
Confidence            33333222   23455566665321111  122222       22   8999999999999765

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.57  E-value=5.1e-08  Score=69.90  Aligned_cols=133  Identities=14%  Similarity=0.098  Sum_probs=78.1

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCC---CCCCCceee-------------------EEE-EEEEEEC----CeEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGA-------------------DFL-TKEVQFE----DRLFT   58 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~-------------------~~~-~~~~~~~----~~~~~   58 (156)
                      +..++|..+|.-.-|||||..++.+--..   ++-....+.                   .+. ...+...    .-...
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            57899999999999999999999754211   000000000                   000 0001101    11246


Q ss_pred             EEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeee
Q 031598           59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC  138 (156)
Q Consensus        59 ~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~  138 (156)
                      +.++|.||++-.......-..-.|++++|+.++.+..-....+-+. -+....     -..+++|-||+||...+...++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~-AleIig-----ik~iiIvQNKIDlV~~E~AlE~  161 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM-ALEIIG-----IKNIIIVQNKIDLVSRERALEN  161 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH-HHhhhc-----cceEEEEecccceecHHHHHHH
Confidence            8999999997655444433445699999999998542111122111 122223     3369999999999987545555


Q ss_pred             eccccc
Q 031598          139 FGEEGS  144 (156)
Q Consensus       139 ~~e~~~  144 (156)
                      ++++++
T Consensus       162 y~qIk~  167 (415)
T COG5257         162 YEQIKE  167 (415)
T ss_pred             HHHHHH
Confidence            555444

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.55  E-value=2.2e-06  Score=59.71  Aligned_cols=89  Identities=13%  Similarity=0.142  Sum_probs=52.9

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcC--CCCCCCC-CceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccc------hh
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQYK-ATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQS------LG   74 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~------~~   74 (156)
                      ..+..-|.|+|++++|||+|+|.+++.  .+..... ...+........... +....+.++||+|......      ..
T Consensus         4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence            455677899999999999999999988  4432111 111111112222211 2346899999999554322      12


Q ss_pred             hhheec--ccEEEEEEECCCh
Q 031598           75 VAFYRG--ADCCVLVYDVNSM   93 (156)
Q Consensus        75 ~~~~~~--~~~~l~v~d~~~~   93 (156)
                      ...+..  ++++++..+....
T Consensus        84 ~~~l~~llss~~i~n~~~~~~  104 (224)
T cd01851          84 LFALATLLSSVLIYNSWETIL  104 (224)
T ss_pred             HHHHHHHHhCEEEEeccCccc
Confidence            233333  7888877776654

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=7e-07  Score=66.48  Aligned_cols=114  Identities=18%  Similarity=0.028  Sum_probs=79.1

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCC---CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      -|+-.|.-.-|||||+..+.+...   ++......+.+.......  ..+..+.++|+||++++-.....-+...|..++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~--~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRK--LEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEecc--CCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            356778888999999999986643   333344444554444443  344589999999999998888888889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++.++.-..+..+  ...++..+.     ....++|+||+|+.++
T Consensus        80 vV~~deGl~~qtgE--hL~iLdllg-----i~~giivltk~D~~d~  118 (447)
T COG3276          80 VVAADEGLMAQTGE--HLLILDLLG-----IKNGIIVLTKADRVDE  118 (447)
T ss_pred             EEeCccCcchhhHH--HHHHHHhcC-----CCceEEEEeccccccH
Confidence            99997644333221  222333333     2346999999999975

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.50  E-value=1e-06  Score=58.05  Aligned_cols=21  Identities=33%  Similarity=0.631  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      +++.|..|+|||||++++...
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            579999999999999998865

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=2.7e-07  Score=69.92  Aligned_cols=120  Identities=20%  Similarity=0.264  Sum_probs=81.1

Q ss_pred             cccceeEEEEEEcCCCCChhHHHHHHhcCC------------CC------CCCCCceeeEEEEEEEE------------E
Q 031598            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKK------------FS------NQYKATIGADFLTKEVQ------------F   52 (156)
Q Consensus         3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~------------~~------~~~~~~~~~~~~~~~~~------------~   52 (156)
                      .++.+..++.|+..-.-|||||-..|....            +.      +....+...+..+..++            .
T Consensus        14 ~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~   93 (842)
T KOG0469|consen   14 DKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG   93 (842)
T ss_pred             ccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence            345667889999999999999999886431            11      11111111111111111            1


Q ss_pred             CCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      ++..+.++++|.||+.+|.+...+.++-.|+.+.|+|+-+..-.+.-.-+.+.+.+.        +.-++|.||.|..
T Consensus        94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER--------IkPvlv~NK~DRA  163 (842)
T KOG0469|consen   94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER--------IKPVLVMNKMDRA  163 (842)
T ss_pred             CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh--------ccceEEeehhhHH
Confidence            345688999999999999999999999999999999999865444333344555443        3347889999974

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.47  E-value=4.4e-07  Score=63.98  Aligned_cols=58  Identities=26%  Similarity=0.253  Sum_probs=36.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCC------CCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQ------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (156)
                      .++++|.+|+|||||||++.+......      ......++.....+...+    -.++||||...+.
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~  185 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFG  185 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccC
Confidence            579999999999999999997643211      111122333333444432    2689999976554

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12289 GTPase RsgA; Reviewed

Probab=98.45  E-value=4.2e-07  Score=67.10  Aligned_cols=56  Identities=21%  Similarity=0.264  Sum_probs=35.3

Q ss_pred             EEEEcCCCCChhHHHHHHhcCCCCC------CCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031598           11 VIILGDSGVGKTSLMNQYVNKKFSN------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (156)
                      ++|+|++|+|||||||+|.+.....      .......++.....+..++..   .++||||...
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~  236 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ  236 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence            7999999999999999999654321      111111133334444454332   5899999443

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.44  E-value=3e-07  Score=63.18  Aligned_cols=26  Identities=23%  Similarity=0.540  Sum_probs=22.6

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .....|.++|..|+|||||+++++..
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~   45 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDN   45 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            34688999999999999999998754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.43  E-value=2.1e-07  Score=70.93  Aligned_cols=117  Identities=24%  Similarity=0.398  Sum_probs=88.7

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.+|+.|+|..++|||.|+.+++...+.+...+..+  .+.+.+..++....+-+.|..|....     .|-...|++|
T Consensus        28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~a-----Qft~wvdavI  100 (749)
T KOG0705|consen   28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPDA-----QFCQWVDAVV  100 (749)
T ss_pred             cchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCchh-----hhhhhccceE
Confidence            4468999999999999999999998887765555443  34555666777788888888873322     2456789999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +||...+..+|+.+......+..+..   ...+|+++|+++.=....
T Consensus       101 fvf~~~d~~s~q~v~~l~~~l~~~r~---r~~i~l~lvgtqd~iS~~  144 (749)
T KOG0705|consen  101 FVFSVEDEQSFQAVQALAHEMSSYRN---ISDLPLILVGTQDHISAK  144 (749)
T ss_pred             EEEEeccccCHHHHHHHHhhcccccc---cccchHHhhcCcchhhcc
Confidence            99999999999998877777665544   337899999987555444

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.42  E-value=8.2e-07  Score=65.98  Aligned_cols=57  Identities=25%  Similarity=0.380  Sum_probs=37.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCC----CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFS----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (156)
                      .++.++|.+|+|||||+|++.+....    .......+++.....+..++   .+.++||||..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence            48999999999999999999975421    11223333444444444422   35799999943

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.41  E-value=8.4e-07  Score=62.55  Aligned_cols=58  Identities=22%  Similarity=0.197  Sum_probs=46.8

Q ss_pred             ccccchhhhheecccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           68 ERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        68 ~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +.+..+...+++++|.+++|||+.++. ++..+..|+..+..       .++|+++|+||+||.++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-------~~i~~vIV~NK~DL~~~   82 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-------QNIEPIIVLNKIDLLDD   82 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEECcccCCC
Confidence            344556667889999999999999887 88888888875532       27899999999999754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.40  E-value=7.4e-07  Score=65.51  Aligned_cols=122  Identities=18%  Similarity=0.213  Sum_probs=77.4

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC--------------CCceeeEEEEEEEEECCe--------------
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--------------KATIGADFLTKEVQFEDR--------------   55 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~--------------   55 (156)
                      ..+..+.+.+.|.-+.|||||+-.|...+..+-.              ....+.+.....+.+++.              
T Consensus       113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~  192 (527)
T COG5258         113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK  192 (527)
T ss_pred             CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence            3556788999999999999999888755432111              111112222222323221              


Q ss_pred             -------EEEEEEEeCCCcccccchhhhhe--ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 031598           56 -------LFTLQIWDTAGQERFQSLGVAFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK  126 (156)
Q Consensus        56 -------~~~~~i~D~~g~~~~~~~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK  126 (156)
                             +--+.++||.|++.|......-+  ...|..++++.+++..+.-  .+.+.-+....      ..|+++|.||
T Consensus       193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~--tkEHLgi~~a~------~lPviVvvTK  264 (527)
T COG5258         193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM--TKEHLGIALAM------ELPVIVVVTK  264 (527)
T ss_pred             hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh--hhHhhhhhhhh------cCCEEEEEEe
Confidence                   12478999999998865544333  5689999999999864322  22222222222      7899999999


Q ss_pred             CCCCCCC
Q 031598          127 IDVDGGN  133 (156)
Q Consensus       127 ~Dl~~~~  133 (156)
                      +|+.+++
T Consensus       265 ~D~~~dd  271 (527)
T COG5258         265 IDMVPDD  271 (527)
T ss_pred             cccCcHH
Confidence            9998875

>PRK13796 GTPase YqeH; Provisional

Probab=98.40  E-value=5.8e-07  Score=66.87  Aligned_cols=56  Identities=23%  Similarity=0.395  Sum_probs=37.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCC----CCCCceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSN----QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (156)
                      .++.++|.+++|||||||+|.......    ...+..+++.....+..++.   ..++||||.
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi  220 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI  220 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence            478999999999999999998543111    11233344444444444432   469999994

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.36  E-value=8.4e-06  Score=53.22  Aligned_cols=113  Identities=21%  Similarity=0.260  Sum_probs=67.2

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc------------------
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE------------------   68 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~------------------   68 (156)
                      ..+||.+.|+||+||||++.++...--.. ....  -...+..+.-++...-|.+.|+...+                  
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kv--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREK-GYKV--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhc-Ccee--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            45899999999999999999887432111 1111  12344555556777788888887311                  


Q ss_pred             ----cccchh----hhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598           69 ----RFQSLG----VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (156)
Q Consensus        69 ----~~~~~~----~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  129 (156)
                          .++...    ...++.+|+  +++|--.+--+. ...+.+.+...+..    ..|++.+.++-+.
T Consensus        81 V~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMElk-s~~f~~~ve~vl~~----~kpliatlHrrsr  142 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADV--IIIDEIGPMELK-SKKFREAVEEVLKS----GKPLIATLHRRSR  142 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCE--EEEecccchhhc-cHHHHHHHHHHhcC----CCcEEEEEecccC
Confidence                111111    122234564  455766654333 35566666666654    6789998887744

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.33  E-value=1.3e-06  Score=62.64  Aligned_cols=59  Identities=24%  Similarity=0.276  Sum_probs=39.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCC------CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (156)
                      -.+++|.+|+|||||+|+|.....      .........++.....+.+++.+   .|+||||...+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            458999999999999999986321      22333334455556666665433   377999976665

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.29  E-value=2e-06  Score=62.09  Aligned_cols=60  Identities=20%  Similarity=0.223  Sum_probs=37.8

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCC------CceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK------ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (156)
                      ..++++|++|+|||||+|.+.+........      ....++.....+...+.   ..++||||...+.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            468999999999999999999765332111      11112333333444322   2589999976554

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.28  E-value=2.2e-06  Score=62.20  Aligned_cols=59  Identities=20%  Similarity=0.211  Sum_probs=36.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCC------CceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK------ATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (156)
                      ..++++|.+|+|||||+|+|.+........      ....++.....+..++.   ..++||||...+
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~  229 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSF  229 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCcc
Confidence            357899999999999999998765332111      11112222333333332   368999996544

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.26  E-value=1.3e-06  Score=63.25  Aligned_cols=121  Identities=18%  Similarity=0.149  Sum_probs=79.6

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhc-------CCC-------CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVN-------KKF-------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (156)
                      .++..||.-+|.-.-|||||-..+..       .++       ........+.+.....+.|.......-=.|+||+.+|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY  130 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence            45568999999999999999776641       111       1122333445566666666555555566799999988


Q ss_pred             cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      -.....-....|+.++|+.+.|....+.=.  +..+.+...     -..+++++||.|+.++
T Consensus       131 IKNMItGaaqMDGaILVVaatDG~MPQTrE--HlLLArQVG-----V~~ivvfiNKvD~V~d  185 (449)
T KOG0460|consen  131 IKNMITGAAQMDGAILVVAATDGPMPQTRE--HLLLARQVG-----VKHIVVFINKVDLVDD  185 (449)
T ss_pred             HHHhhcCccccCceEEEEEcCCCCCcchHH--HHHHHHHcC-----CceEEEEEecccccCC
Confidence            766666667789999999999965433211  112222222     2358899999999965

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.25  E-value=6.3e-06  Score=57.80  Aligned_cols=89  Identities=17%  Similarity=0.170  Sum_probs=61.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc-------ccchhhhheecc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRGA   81 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~   81 (156)
                      -+|-++|-|++||||++..+.+...+.......+.+.......+++  -.+++.|.||.-+       ......+..+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            5899999999999999999987754332222222222233333444  5799999999332       234455667889


Q ss_pred             cEEEEEEECCChhhHHHH
Q 031598           82 DCCVLVYDVNSMKSFDNL   99 (156)
Q Consensus        82 ~~~l~v~d~~~~~~~~~~   99 (156)
                      +.+++|.|+..|-+-..+
T Consensus       138 nli~~vld~~kp~~hk~~  155 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKI  155 (358)
T ss_pred             cEEEEEeeccCcccHHHH
Confidence            999999999987665544

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.25  E-value=5.6e-06  Score=62.50  Aligned_cols=115  Identities=17%  Similarity=0.139  Sum_probs=62.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc------CCC----CCCCC-----------CceeeEEEEEEEEEC-------------
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN------KKF----SNQYK-----------ATIGADFLTKEVQFE-------------   53 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~------~~~----~~~~~-----------~~~~~~~~~~~~~~~-------------   53 (156)
                      ..-|+++|++|+||||++..|..      .+.    .+.+.           ...+..+.......+             
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            46789999999999999988852      211    01100           001111111000000             


Q ss_pred             CeEEEEEEEeCCCcccccchhhhh------eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 031598           54 DRLFTLQIWDTAGQERFQSLGVAF------YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI  127 (156)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~------~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  127 (156)
                      ...+.+.|+||+|...........      ....+-+++|+|+.....-   ......+.+..       .+--++.||.
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~~-------~~~g~IlTKl  249 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDSV-------DVGSVIITKL  249 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhcc-------CCcEEEEECc
Confidence            124678999999954332222221      1246789999998764322   22233333221       2557889999


Q ss_pred             CCCCC
Q 031598          128 DVDGG  132 (156)
Q Consensus       128 Dl~~~  132 (156)
                      |....
T Consensus       250 D~~ar  254 (429)
T TIGR01425       250 DGHAK  254 (429)
T ss_pred             cCCCC
Confidence            98654

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.22  E-value=7.1e-06  Score=44.08  Aligned_cols=45  Identities=27%  Similarity=0.256  Sum_probs=31.2

Q ss_pred             ecccEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598           79 RGADCCVLVYDVNSM--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID  128 (156)
Q Consensus        79 ~~~~~~l~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  128 (156)
                      .-.+++++++|.+..  .+.++....+++++..+.     +.|+++|.||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-----~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-----NKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-----TS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-----CCCEEEEEeccC
Confidence            346899999999984  456777778888888876     779999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.22  E-value=5.2e-06  Score=58.76  Aligned_cols=116  Identities=20%  Similarity=0.319  Sum_probs=69.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCC----ceeeEEEEEEEEECCeEEEEEEEeCCC-------cccccc----
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA----TIGADFLTKEVQFEDRLFTLQIWDTAG-------QERFQS----   72 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~g-------~~~~~~----   72 (156)
                      .++|+-+|..|.|||||+.+|++..+...+.+    .......+....-.+....++++||.|       .+.|..    
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy  121 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY  121 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence            48999999999999999999999887543322    222222222233355667899999999       111111    


Q ss_pred             ---hhhhhe---------------ecccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           73 ---LGVAFY---------------RGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        73 ---~~~~~~---------------~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                         ...+|+               ...++.++.+..... ++.++. -.+..+.+        ...+|-|+.|+|-..+
T Consensus       122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Lds--------kVNIIPvIAKaDtisK  191 (406)
T KOG3859|consen  122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLDS--------KVNIIPVIAKADTISK  191 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHhh--------hhhhHHHHHHhhhhhH
Confidence               111111               346888888876653 333332 12222221        5567778888887654

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.17  E-value=3.1e-07  Score=63.23  Aligned_cols=76  Identities=9%  Similarity=0.121  Sum_probs=48.6

Q ss_pred             eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCC----------hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 031598           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDNFPFVVLG  124 (156)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~  124 (156)
                      ...-|.++|++|+..-+..|..++++.-.+++++..+.          ....++....+..+..+   .--.+.++|++.
T Consensus       197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~y---PWF~nssVIlFL  273 (359)
T KOG0085|consen  197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITY---PWFQNSSVILFL  273 (359)
T ss_pred             hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcc---ccccCCceEEEe
Confidence            34567899999988888888888877666665544432          22333333333333321   222277999999


Q ss_pred             ecCCCCCCC
Q 031598          125 NKIDVDGGN  133 (156)
Q Consensus       125 nK~Dl~~~~  133 (156)
                      ||-|+.+++
T Consensus       274 NKkDlLEek  282 (359)
T KOG0085|consen  274 NKKDLLEEK  282 (359)
T ss_pred             chhhhhhhh
Confidence            999998763

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.16  E-value=5.1e-06  Score=62.44  Aligned_cols=77  Identities=16%  Similarity=0.193  Sum_probs=57.6

Q ss_pred             EEEEEEeCCCcccccchhhhheecccEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-------SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  129 (156)
                      ..+.++|++|+..-+..|..++..++++++|+++++-+       ....+.+-+..+...+......+.|++|+.||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            67899999999999999999999999999999987521       12334444444544445444448899999999999


Q ss_pred             CCCC
Q 031598          130 DGGN  133 (156)
Q Consensus       130 ~~~~  133 (156)
                      ..++
T Consensus       316 f~~K  319 (389)
T PF00503_consen  316 FEEK  319 (389)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.15  E-value=7.2e-06  Score=58.90  Aligned_cols=106  Identities=14%  Similarity=0.260  Sum_probs=65.9

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC-----------------
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------------   66 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------------   66 (156)
                      .+.++.+++++|+++.|||+++++|........ ....             ..+.+..+..|.                 
T Consensus        57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga  122 (302)
T PF05621_consen   57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDA-------------ERIPVVYVQMPPEPDERRFYSAILEALGA  122 (302)
T ss_pred             cccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCCC-------------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence            455678899999999999999999997664322 1111             011233333332                 


Q ss_pred             -------cccccchhhhheecccEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 031598           67 -------QERFQSLGVAFYRGADCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK  126 (156)
Q Consensus        67 -------~~~~~~~~~~~~~~~~~~l~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK  126 (156)
                             ...........++.+.+=++++|--..   .+....+.++..+....+..   ++|++.|||+
T Consensus       123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL---~ipiV~vGt~  189 (302)
T PF05621_consen  123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL---QIPIVGVGTR  189 (302)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc---CCCeEEeccH
Confidence                   112233344567888999999997653   23344455555555554443   8899999976

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=6.1e-06  Score=68.76  Aligned_cols=111  Identities=23%  Similarity=0.245  Sum_probs=63.9

Q ss_pred             EEEEcCCCCChhHHHHHHhcCCCC------CCCCCceeeEEEEEEEEECCeEEEEEEEeCCC----c----ccccchhhh
Q 031598           11 VIILGDSGVGKTSLMNQYVNKKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----Q----ERFQSLGVA   76 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----~----~~~~~~~~~   76 (156)
                      -+|+|++|+||||++..-. .+++      .......+ +. ....-+.+   .-.++||.|    +    +.-...|..
T Consensus       128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~g-T~-~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~  201 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPG-TR-NCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLG  201 (1188)
T ss_pred             eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCC-Cc-ccCccccc---ceEEEcCCcceecccCcchhhHHHHHH
Confidence            3899999999999875433 2221      11111111 11 11122222   457889998    2    122344554


Q ss_pred             he---------ecccEEEEEEECCChhh---------HHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           77 FY---------RGADCCVLVYDVNSMKS---------FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        77 ~~---------~~~~~~l~v~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      ++         +..+++++.+|+++.-.         ...++.-++++...+..    ..||++++||.|+..
T Consensus       202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~----~~PVYl~lTk~Dll~  270 (1188)
T COG3523         202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA----RLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc----CCceEEEEecccccc
Confidence            43         45799999999987221         11133334455554443    789999999999975

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.13  E-value=6.8e-06  Score=58.70  Aligned_cols=110  Identities=17%  Similarity=0.147  Sum_probs=65.5

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCC-----------CCCCCCcee---------------eEEEEEEEEECC-------
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKF-----------SNQYKATIG---------------ADFLTKEVQFED-------   54 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~-----------~~~~~~~~~---------------~~~~~~~~~~~~-------   54 (156)
                      ...|.|.|.||+|||||+..|...-.           .+....+-|               ...+...+...+       
T Consensus        51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~  130 (323)
T COG1703          51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSR  130 (323)
T ss_pred             CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhH
Confidence            46899999999999999998863211           011111111               122222221111       


Q ss_pred             -----------eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 031598           55 -----------RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL  123 (156)
Q Consensus        55 -----------~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv  123 (156)
                                 .++.+.|+.|.|.-+.+..   ...-+|.+++|.-..-.+..+.++.-+.++            -=++|
T Consensus       131 at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi------------aDi~v  195 (323)
T COG1703         131 ATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEI------------ADIIV  195 (323)
T ss_pred             HHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhh------------hheee
Confidence                       2356889999985433322   334588888887666666666665544444            12899


Q ss_pred             EecCCCCCC
Q 031598          124 GNKIDVDGG  132 (156)
Q Consensus       124 ~nK~Dl~~~  132 (156)
                      +||.|+.+.
T Consensus       196 INKaD~~~A  204 (323)
T COG1703         196 INKADRKGA  204 (323)
T ss_pred             EeccChhhH
Confidence            999996654

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.12  E-value=7.3e-07  Score=62.50  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=19.4

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHh
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~   29 (156)
                      +.+.|.|.|+||+|||||+..|.
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~   50 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALI   50 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHH
Confidence            45789999999999999999886

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.11  E-value=3.6e-05  Score=50.17  Aligned_cols=58  Identities=22%  Similarity=0.225  Sum_probs=35.3

Q ss_pred             EEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID  128 (156)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  128 (156)
                      .+.+.++||+|...   ....++..+|-++++...+-.+...-+   ...+.+.         .=++++||+|
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~---k~~~~~~---------~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAI---KAGIMEI---------ADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHh---hhhHhhh---------cCEEEEeCCC
Confidence            46789999988542   223477889988888766633222211   1122222         2389999998

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.08  E-value=6.9e-06  Score=54.64  Aligned_cols=108  Identities=26%  Similarity=0.390  Sum_probs=56.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeC-CCc---------------------
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT-AGQ---------------------   67 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~g~---------------------   67 (156)
                      +|++.|++|+||||++++++..-. ....+..|  +.+....-++....|.+.|. .|.                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~-~~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELK-KKGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHH-HTCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhh-ccCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            689999999999999999874421 11122222  33344444566667777777 331                     


Q ss_pred             -ccccchhhhhe----ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 031598           68 -ERFQSLGVAFY----RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI  127 (156)
Q Consensus        68 -~~~~~~~~~~~----~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  127 (156)
                       +.+.......+    ..++  ++++|--.+--+. ...|.+.+...+..    +.|++.++.+.
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~-~~~F~~~v~~~l~s----~~~vi~vv~~~  135 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK-SPGFREAVEKLLDS----NKPVIGVVHKR  135 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC--CHHHHHHHHHHCT----TSEEEEE--SS
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc-CHHHHHHHHHHHcC----CCcEEEEEecC
Confidence             11111111122    2345  7777766542211 24566666666653    67899998887

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.05  E-value=5.7e-05  Score=50.34  Aligned_cols=67  Identities=24%  Similarity=0.140  Sum_probs=39.3

Q ss_pred             EEEEEEEeCCCcccccc----hhhhhe--ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598           56 LFTLQIWDTAGQERFQS----LGVAFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (156)
Q Consensus        56 ~~~~~i~D~~g~~~~~~----~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  129 (156)
                      .+.+.++|++|......    ....+.  ...+.+++|+|......   ..++...+.+..      + ...+|.||.|.
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~------~-~~~viltk~D~  151 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL------G-ITGVILTKLDG  151 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC------C-CCEEEEECCcC
Confidence            34588899999643211    111111  24899999999875432   223344443322      2 24677799998


Q ss_pred             CCC
Q 031598          130 DGG  132 (156)
Q Consensus       130 ~~~  132 (156)
                      ...
T Consensus       152 ~~~  154 (173)
T cd03115         152 DAR  154 (173)
T ss_pred             CCC
Confidence            765

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.03  E-value=8.5e-06  Score=61.92  Aligned_cols=55  Identities=24%  Similarity=0.326  Sum_probs=38.0

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (156)
                      .+.|.++|.|++||||.||.|.+++.... ..|.|.+-.-..+.+..   .+.+.|+||
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPG  368 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPG  368 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCC
Confidence            68999999999999999999999874322 23333332222333333   477889999

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.03  E-value=1.7e-05  Score=59.00  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -.++++|++|+||||++..|...
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46799999999999999998754

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.03  E-value=1.7e-05  Score=56.77  Aligned_cols=67  Identities=18%  Similarity=0.134  Sum_probs=39.9

Q ss_pred             EEEEEEEeCCCcccccchhhh-------h-----eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 031598           56 LFTLQIWDTAGQERFQSLGVA-------F-----YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL  123 (156)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~-------~-----~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv  123 (156)
                      ++.+.++||||..........       .     -..+|..++|+|+....  +.+ .....+.+...       +--+|
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~~~~f~~~~~-------~~g~I  223 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQAKVFNEAVG-------LTGII  223 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HHHHHHHhhCC-------CCEEE
Confidence            367899999996543222111       1     12378999999998542  222 22333332221       35789


Q ss_pred             EecCCCCCC
Q 031598          124 GNKIDVDGG  132 (156)
Q Consensus       124 ~nK~Dl~~~  132 (156)
                      .||.|....
T Consensus       224 lTKlDe~~~  232 (272)
T TIGR00064       224 LTKLDGTAK  232 (272)
T ss_pred             EEccCCCCC
Confidence            999998654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=3.8e-05  Score=53.75  Aligned_cols=116  Identities=16%  Similarity=0.275  Sum_probs=67.7

Q ss_pred             EEEEEEcCCCC--ChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEE--EEEEEeCCCcccccchhhhheecccEE
Q 031598            9 LKVIILGDSGV--GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLF--TLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         9 ~~i~v~G~~~~--GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..++|+|-+|+  ||.+++.+|....+.........+.+..  ++++.+-+  .+++.-.+.-+++.-..........++
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hg--wtid~kyysadi~lcishicde~~lpn~~~a~pl~a~   82 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHG--WTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAF   82 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeec--eEecceeeecceeEEeecccchhccCCcccccceeeE
Confidence            46789999998  9999999999888764433332222222  22222211  223322332222211111222445789


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++||.+....+..++.|....    ....  ---.+.+|||+|...+
T Consensus        83 vmvfdlse~s~l~alqdwl~ht----dins--fdillcignkvdrvph  124 (418)
T KOG4273|consen   83 VMVFDLSEKSGLDALQDWLPHT----DINS--FDILLCIGNKVDRVPH  124 (418)
T ss_pred             EEEEeccchhhhHHHHhhcccc----cccc--chhheecccccccccc
Confidence            9999999999888888887642    1111  1124677899998654

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=98.00  E-value=4.3e-05  Score=46.54  Aligned_cols=82  Identities=20%  Similarity=0.218  Sum_probs=49.8

Q ss_pred             EEEEc-CCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598           11 VIILG-DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (156)
Q Consensus        11 i~v~G-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d   89 (156)
                      |++.| .+|+||||+...+...--. ...+..-.+       .+.. +.+.++|+|+....  .....+..+|.++++.+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d-------~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLID-------LDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEe-------CCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence            56666 6789999987776533211 111111111       1111 67899999996533  23367788999999987


Q ss_pred             CCChhhHHHHHHHHH
Q 031598           90 VNSMKSFDNLNNWRE  104 (156)
Q Consensus        90 ~~~~~~~~~~~~~~~  104 (156)
                      .+ ..++..+..+.+
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            75 445555555554

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.97  E-value=1.7e-05  Score=58.47  Aligned_cols=117  Identities=22%  Similarity=0.352  Sum_probs=72.0

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCC-----------------------CCCCceeeEEEEEEEEECC----------
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSN-----------------------QYKATIGADFLTKEVQFED----------   54 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~----------   54 (156)
                      .++++++|...+|||||+--|.+.....                       ......+.+.....+.|..          
T Consensus       167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~  246 (591)
T KOG1143|consen  167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK  246 (591)
T ss_pred             EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence            4899999999999999987776443210                       0011111121111222211          


Q ss_pred             eEEEEEEEeCCCcccccchhhhheec--ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           55 RLFTLQIWDTAGQERFQSLGVAFYRG--ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~--~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..-.++++|..|+..|......-+..  .|..++|+++...-.+.. ++ +..+...+      ++|++++.+|+|+.+.
T Consensus       247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rE-HLgl~~AL------~iPfFvlvtK~Dl~~~  318 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-RE-HLGLIAAL------NIPFFVLVTKMDLVDR  318 (591)
T ss_pred             hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HH-HHHHHHHh------CCCeEEEEEeeccccc
Confidence            11247899999999887666655543  588888988887543322 11 11222222      8899999999999986

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.93  E-value=5.3e-06  Score=60.62  Aligned_cols=23  Identities=26%  Similarity=0.603  Sum_probs=19.7

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..-++++|++|+||||++..+..
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~  136 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAH  136 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            45789999999999999988763

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.90  E-value=1.2e-05  Score=59.45  Aligned_cols=57  Identities=28%  Similarity=0.473  Sum_probs=43.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (156)
                      ++.+++.|+|-+++||||+||+|..++.-. ..+..|.+.....++.+.   .+.|.|.||
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~-vg~~pGvT~smqeV~Ldk---~i~llDsPg  306 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACN-VGNVPGVTRSMQEVKLDK---KIRLLDSPG  306 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhcccc-CCCCccchhhhhheeccC---CceeccCCc
Confidence            567999999999999999999999877532 244555555566665544   688999999

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.89  E-value=8.4e-05  Score=47.88  Aligned_cols=107  Identities=19%  Similarity=0.171  Sum_probs=61.8

Q ss_pred             EEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECC
Q 031598           12 IILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN   91 (156)
Q Consensus        12 ~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~   91 (156)
                      +.-|.+|+||||+...+...--. ......-.+...   ......+.+.++|+|+..  .......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            45578999999997766532100 001111111110   001112678999999854  333456788899999998876


Q ss_pred             ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           92 SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      . .++.......+.+.....     ..++.+|.|+++..
T Consensus        78 ~-~s~~~~~~~l~~l~~~~~-----~~~~~lVvN~~~~~  110 (139)
T cd02038          78 P-TSITDAYALIKKLAKQLR-----VLNFRVVVNRAESP  110 (139)
T ss_pred             h-hHHHHHHHHHHHHHHhcC-----CCCEEEEEeCCCCH
Confidence            3 344444444444433221     45788999999754

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK13695 putative NTPase; Provisional

Probab=97.82  E-value=0.00016  Score=48.30  Aligned_cols=23  Identities=39%  Similarity=0.576  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +++++.|++|+|||||+..+.+.
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~   23 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAEL   23 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999986543

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.80  E-value=0.00012  Score=56.73  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      -.++|+|+.|+||||++..|..
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999988764

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.79  E-value=0.00017  Score=52.90  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -.++.|--|||||||+++++..
T Consensus         6 v~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            3588899999999999999854

>cd01855 YqeH YqeH

Probab=97.76  E-value=2.9e-05  Score=52.59  Aligned_cols=55  Identities=20%  Similarity=0.218  Sum_probs=38.8

Q ss_pred             ccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        68 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +.+..++..+++.+|++++|+|+.++..     .|...+....     .+.|+++|+||+|+..+
T Consensus        22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-----~~~~~ilV~NK~Dl~~~   76 (190)
T cd01855          22 DFILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-----GNNPVILVGNKIDLLPK   76 (190)
T ss_pred             HHHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-----CCCcEEEEEEchhcCCC
Confidence            3357788888999999999999987542     1222221111     26799999999999754

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.76  E-value=6.7e-05  Score=54.20  Aligned_cols=51  Identities=16%  Similarity=0.063  Sum_probs=40.2

Q ss_pred             hhheecccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           75 VAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        75 ~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ...+.++|.+++|+|+.++. ++..+..|+..+..    .   ++|+++|+||+||.++
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~---~ip~iIVlNK~DL~~~  124 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----A---GIEPVIVLTKADLLDD  124 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----c---CCCEEEEEEHHHCCCh
Confidence            34578899999999999987 77777777665432    1   6799999999999754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.74  E-value=2.9e-05  Score=52.97  Aligned_cols=22  Identities=18%  Similarity=0.439  Sum_probs=19.3

Q ss_pred             eEEEEEEcCCCCChhHHHHHHh
Q 031598            8 LLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~   29 (156)
                      .+..+|+|+.||||||+.+.+.
T Consensus         3 ~ya~lV~GpAgSGKSTyC~~~~   24 (273)
T KOG1534|consen    3 RYAQLVMGPAGSGKSTYCSSMY   24 (273)
T ss_pred             ceeEEEEccCCCCcchHHHHHH
Confidence            3567999999999999999885

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.74  E-value=2.8e-05  Score=48.59  Aligned_cols=22  Identities=32%  Similarity=0.629  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

...

>PRK08118 topology modulation protein; Reviewed

Probab=97.73  E-value=2.9e-05  Score=51.66  Aligned_cols=23  Identities=39%  Similarity=0.679  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .+|+|+|++|||||||...+...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988754

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.72  E-value=0.00034  Score=42.90  Aligned_cols=100  Identities=16%  Similarity=0.076  Sum_probs=55.7

Q ss_pred             cCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh
Q 031598           15 GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK   94 (156)
Q Consensus        15 G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~   94 (156)
                      +.+|+||||+...|...-.........-.+...     ... ..+.++|+|+....  .....+..+|.++++.+.+ ..
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~-----~~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~   77 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDL-----QFG-DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LP   77 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCC-----CCC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hH
Confidence            478899999877665321110011111111111     111 16899999996533  3345678899999988766 44


Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 031598           95 SFDNLNNWREEFLIQASPSDPDNFPFVVLGNK  126 (156)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK  126 (156)
                      +......+.+.+.+.-..   +...+.+|+|+
T Consensus        78 s~~~~~~~~~~l~~~~~~---~~~~~~lVvNr  106 (106)
T cd03111          78 SIRNAKRLLELLRVLDYS---LPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHcCCC---CcCceEEEecC
Confidence            555566666655543211   13357788775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK14974 cell division protein FtsY; Provisional

Probab=97.72  E-value=3.2e-05  Score=56.94  Aligned_cols=66  Identities=20%  Similarity=0.127  Sum_probs=37.8

Q ss_pred             EEEEEEeCCCcccccchh----hhh--eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           57 FTLQIWDTAGQERFQSLG----VAF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~----~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      +.+.++||+|........    ...  ....|..++|.|+....   ........+.....       .--++.||.|..
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~~~-------~~giIlTKlD~~  292 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEAVG-------IDGVILTKVDAD  292 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhcCC-------CCEEEEeeecCC
Confidence            468999999965322111    111  12468889999987643   22222233322221       347889999986


Q ss_pred             CC
Q 031598          131 GG  132 (156)
Q Consensus       131 ~~  132 (156)
                      ..
T Consensus       293 ~~  294 (336)
T PRK14974        293 AK  294 (336)
T ss_pred             CC
Confidence            54

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.72  E-value=0.00031  Score=44.69  Aligned_cols=25  Identities=28%  Similarity=0.484  Sum_probs=21.7

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      ...+++.|++|+|||++++.+.+.-
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3568999999999999999998664

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.71  E-value=6.3e-05  Score=54.09  Aligned_cols=61  Identities=26%  Similarity=0.391  Sum_probs=38.7

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCC----CCCCceeeEEEEEE-EEECCeEEEEEEEeCCCc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN----QYKATIGADFLTKE-VQFEDRLFTLQIWDTAGQ   67 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~   67 (156)
                      ...+++.|+|.|++|||||||.+.+.....    ......|.+..+.. +.+.... .+.+.||||.
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence            356899999999999999999887554321    11222333333333 3333332 4788999993

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.71  E-value=2.9e-05  Score=52.16  Aligned_cols=23  Identities=35%  Similarity=0.795  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .+|+|+|+|||||||+...+...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999866

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.71  E-value=0.00041  Score=41.11  Aligned_cols=70  Identities=20%  Similarity=0.264  Sum_probs=44.8

Q ss_pred             EEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch-hhhheecccEEEEEEE
Q 031598           11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-GVAFYRGADCCVLVYD   89 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~l~v~d   89 (156)
                      +++.|..|+||||+...+...-... ...       .  .-.+    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~-g~~-------v--~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKR-GKR-------V--LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC-CCe-------E--EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            5788999999999988876442110 011       1  1111    6889999986533321 1455667899999887


Q ss_pred             CCChh
Q 031598           90 VNSMK   94 (156)
Q Consensus        90 ~~~~~   94 (156)
                      .....
T Consensus        68 ~~~~~   72 (99)
T cd01983          68 PEALA   72 (99)
T ss_pred             Cchhh
Confidence            77543

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.70  E-value=4.5e-05  Score=52.27  Aligned_cols=25  Identities=32%  Similarity=0.489  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFS   34 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~   34 (156)
                      .++++|++|||||||++++.+-+.+
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~~   54 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEEP   54 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcCC
Confidence            5789999999999999999877643

>cd01859 MJ1464 MJ1464

Probab=97.67  E-value=3.3e-05  Score=50.61  Aligned_cols=54  Identities=13%  Similarity=0.064  Sum_probs=35.8

Q ss_pred             cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +.++...++.+|++++|+|++++..... ..    +.......   +.|+++|+||+|+.++
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~----l~~~~~~~---~~p~iiv~NK~Dl~~~   56 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RK----LERYVLEL---GKKLLIVLNKADLVPK   56 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HH----HHHHHHhC---CCcEEEEEEhHHhCCH
Confidence            4456677788999999999987643222 11    11111111   6799999999999643

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK07261 topology modulation protein; Provisional

Probab=97.67  E-value=4.2e-05  Score=51.05  Aligned_cols=22  Identities=36%  Similarity=0.638  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +|+|+|++|||||||...+...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998744

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.65  E-value=6e-05  Score=48.60  Aligned_cols=50  Identities=20%  Similarity=0.193  Sum_probs=34.5

Q ss_pred             hhheecccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           75 VAFYRGADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        75 ~~~~~~~~~~l~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ...++.+|++++|+|+.++.+..  .+..+...    ..    .+.|+++|+||+|+.++
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~----~~----~~k~~iivlNK~DL~~~   57 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKE----VD----PRKKNILLLNKADLLTE   57 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHh----cc----CCCcEEEEEechhcCCH
Confidence            34668899999999999876533  22222221    11    26799999999999754

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PF05729 NACHT: NACHT domain

Probab=97.65  E-value=0.00013  Score=47.79  Aligned_cols=22  Identities=27%  Similarity=0.595  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -++|.|.+|+||||++.++...
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHH
Confidence            3689999999999999998754

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.64  E-value=4.2e-05  Score=49.17  Aligned_cols=21  Identities=29%  Similarity=0.672  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      |+++|++||||||+++.+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999844

...

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.62  E-value=4.8e-05  Score=53.13  Aligned_cols=23  Identities=39%  Similarity=0.569  Sum_probs=20.3

Q ss_pred             EEEEcCCCCChhHHHHHHhcCCC
Q 031598           11 VIILGDSGVGKTSLMNQYVNKKF   33 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~~   33 (156)
                      ++++|++|||||||++-+.+-..
T Consensus        32 vsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            68999999999999999987653

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.62  E-value=0.00056  Score=51.18  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      ...|+++|+.|+||||-+-.|..+-
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~  227 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARY  227 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHH
Confidence            4568999999999999888876543

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=2.7e-05  Score=57.76  Aligned_cols=130  Identities=19%  Similarity=0.180  Sum_probs=77.1

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCC-------------------------------CCCCCCceeeEEEEEEEEEC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQFE   53 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   53 (156)
                      +....+++++|.-.+||||+-..+....-                               .+.....  .+.......+.
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kg--KtvEvGrA~FE  153 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKG--KTVEVGRAYFE  153 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhcc--ceeeeeeEEEE
Confidence            45679999999999999997655432100                               0111111  11222222222


Q ss_pred             CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh---hHHHHHHHHH--HHHHhcCCCCCCCCcEEEEEecCC
Q 031598           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SFDNLNNWRE--EFLIQASPSDPDNFPFVVLGNKID  128 (156)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~p~ilv~nK~D  128 (156)
                      -...++++.|.||+..|-.....-...+|..++|+++...+   .|+.--+-++  .+.....     -...|+++||+|
T Consensus       154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-----v~~lVv~vNKMd  228 (501)
T KOG0459|consen  154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-----VKHLIVLINKMD  228 (501)
T ss_pred             ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-----cceEEEEEEecc
Confidence            33457999999999888766666677889999998875422   2333211122  2222222     346899999999


Q ss_pred             CCCCCceeeeecc
Q 031598          129 VDGGNSRVVCFGE  141 (156)
Q Consensus       129 l~~~~~~~~~~~e  141 (156)
                      -+..+-+...++|
T Consensus       229 dPtvnWs~eRy~E  241 (501)
T KOG0459|consen  229 DPTVNWSNERYEE  241 (501)
T ss_pred             CCccCcchhhHHH
Confidence            9877544444443

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.57  E-value=8.3e-05  Score=51.12  Aligned_cols=27  Identities=33%  Similarity=0.529  Sum_probs=22.6

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +.+..-|+|+|++||||||+++.|...
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            445567889999999999999999754

>PRK10867 signal recognition particle protein; Provisional

Probab=97.57  E-value=0.00064  Score=51.79  Aligned_cols=65  Identities=25%  Similarity=0.170  Sum_probs=36.4

Q ss_pred             EEEEEEeCCCcccccch----hhhh--eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           57 FTLQIWDTAGQERFQSL----GVAF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      +.+.|+||+|.......    ....  .-..+.+++|+|....   +........+.....       ..-+|.||.|-.
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~~-------i~giIlTKlD~~  253 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEALG-------LTGVILTKLDGD  253 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhCC-------CCEEEEeCccCc
Confidence            56899999995432111    1111  1246778999998754   233333444433221       235777999964


Q ss_pred             C
Q 031598          131 G  131 (156)
Q Consensus       131 ~  131 (156)
                      .
T Consensus       254 ~  254 (433)
T PRK10867        254 A  254 (433)
T ss_pred             c
Confidence            4

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.56  E-value=6.6e-05  Score=52.06  Aligned_cols=22  Identities=41%  Similarity=0.598  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChhHHHHHHhcCC
Q 031598           11 VIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~   32 (156)
                      ++|+|++|||||||++-+.+-.
T Consensus        34 vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          34 VAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEECCCCCCHHHHHHHHhccc
Confidence            6899999999999999998766

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.56  E-value=0.0005  Score=52.45  Aligned_cols=65  Identities=20%  Similarity=0.085  Sum_probs=37.5

Q ss_pred             EEEEEEeCCCcccccchh----h--hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           57 FTLQIWDTAGQERFQSLG----V--AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~----~--~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      ..+.|+||+|........    .  ..+..+|.+++|+|+....   ........+...+.       .--+|.||.|..
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l~-------i~gvIlTKlD~~  245 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAVG-------IGGIIITKLDGT  245 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcCC-------CCEEEEecccCC
Confidence            368999999955432221    1  1233578899999987752   22222333322111       235778999975


Q ss_pred             C
Q 031598          131 G  131 (156)
Q Consensus       131 ~  131 (156)
                      .
T Consensus       246 a  246 (437)
T PRK00771        246 A  246 (437)
T ss_pred             C
Confidence            4

>TIGR00959 ffh signal recognition particle protein

Probab=97.55  E-value=0.00026  Score=53.82  Aligned_cols=65  Identities=25%  Similarity=0.173  Sum_probs=37.5

Q ss_pred             EEEEEEeCCCcccccchhhhh------eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           57 FTLQIWDTAGQERFQSLGVAF------YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~------~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      +.+.|+||+|...........      .-..+.+++|+|+...   +....+...+...+.       .--+|.||.|..
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v~-------i~giIlTKlD~~  252 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERLG-------LTGVVLTKLDGD  252 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhCC-------CCEEEEeCccCc
Confidence            568999999954322111111      1246788999998754   333344444443322       235778999964


Q ss_pred             C
Q 031598          131 G  131 (156)
Q Consensus       131 ~  131 (156)
                      .
T Consensus       253 ~  253 (428)
T TIGR00959       253 A  253 (428)
T ss_pred             c
Confidence            3

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.55  E-value=0.0017  Score=47.72  Aligned_cols=23  Identities=35%  Similarity=0.544  Sum_probs=19.5

Q ss_pred             EEEEcCCCCChhHHHHHHhcCCC
Q 031598           11 VIILGDSGVGKTSLMNQYVNKKF   33 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~~   33 (156)
                      .++-|-=||||||+++.++.+..
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~~   26 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANRD   26 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhccC
Confidence            47888999999999999986653

>PRK12289 GTPase RsgA; Reviewed

Probab=97.54  E-value=0.00021  Score=53.04  Aligned_cols=50  Identities=18%  Similarity=0.107  Sum_probs=36.1

Q ss_pred             hheecccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           76 AFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        76 ~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..++++|.+++|+|+.++. ....+..|+....    .   .++|+++|+||+||.++
T Consensus        85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~---~~ip~ILVlNK~DLv~~  135 (352)
T PRK12289         85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAE----S---TGLEIVLCLNKADLVSP  135 (352)
T ss_pred             hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----H---CCCCEEEEEEchhcCCh
Confidence            3468899999999998875 3334455554331    1   27899999999999754

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.54  E-value=0.00037  Score=52.66  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=19.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .-++++|++||||||++..|..
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999998864

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.53  E-value=5.2e-05  Score=50.05  Aligned_cols=22  Identities=27%  Similarity=0.646  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999855

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.52  E-value=3.4e-05  Score=57.27  Aligned_cols=83  Identities=19%  Similarity=0.184  Sum_probs=50.3

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc--chhhhheeccc
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--SLGVAFYRGAD   82 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~~~~   82 (156)
                      .+..+.|.++|.|++||||+||+|-..+.-.. .|..|.+-....++..   -++-++|+||.....  ......++   
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItLm---krIfLIDcPGvVyps~dset~ivLk---  376 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITLM---KRIFLIDCPGVVYPSSDSETDIVLK---  376 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHHH---hceeEecCCCccCCCCCchHHHHhh---
Confidence            45678999999999999999999998775433 2333322111111111   268899999944332  22223333   


Q ss_pred             EEEEEEECCChh
Q 031598           83 CCVLVYDVNSMK   94 (156)
Q Consensus        83 ~~l~v~d~~~~~   94 (156)
                      +++-|=++.+|+
T Consensus       377 GvVRVenv~~pe  388 (572)
T KOG2423|consen  377 GVVRVENVKNPE  388 (572)
T ss_pred             ceeeeeecCCHH
Confidence            455566666654

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.52  E-value=0.00011  Score=40.38  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..+|.|+.|+||||++..+...
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999887643

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.52  E-value=0.00038  Score=44.45  Aligned_cols=23  Identities=35%  Similarity=0.585  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      --|++.|+.|+|||||++.+...
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            35889999999999999999865

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.51  E-value=0.00043  Score=52.69  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..++++|++|+||||++..|..
T Consensus       222 ~~i~~vGptGvGKTTt~~kLA~  243 (424)
T PRK05703        222 GVVALVGPTGVGKTTTLAKLAA  243 (424)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999998887653

>PRK06217 hypothetical protein; Validated

Probab=97.51  E-value=9.8e-05  Score=49.76  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .+|+|+|.+||||||+..+|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998854

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.49  E-value=9e-05  Score=54.40  Aligned_cols=22  Identities=36%  Similarity=0.694  Sum_probs=20.1

Q ss_pred             EEEEcCCCCChhHHHHHHhcCC
Q 031598           11 VIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~   32 (156)
                      ++++|++||||||+++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999998765

>cd01858 NGP_1 NGP-1

Probab=97.48  E-value=0.00019  Score=47.12  Aligned_cols=51  Identities=14%  Similarity=0.077  Sum_probs=33.2

Q ss_pred             hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        76 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..++.+|++++|+|+.++..-. .......+.. .    ..+.|+++|+||+|+.++
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~-~----~~~~p~ilVlNKiDl~~~   54 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKK-E----KPHKHLIFVLNKCDLVPT   54 (157)
T ss_pred             HhhhhCCEEEEEEECCCCcccc-CHHHHHHHHh-c----cCCCCEEEEEEchhcCCH
Confidence            3567899999999999874221 1122222221 1    115799999999999754

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK00098 GTPase RsgA; Reviewed

Probab=97.47  E-value=0.00028  Score=51.30  Aligned_cols=49  Identities=18%  Similarity=0.184  Sum_probs=36.0

Q ss_pred             heecccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 FYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 ~~~~~~~~l~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+.+|.+++|+|+.++..... +..|+..+..       .++|+++|+||+|+.++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~-------~~ip~iIVlNK~DL~~~  126 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-------NGIKPIIVLNKIDLLDD  126 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEhHHcCCC
Confidence            3588999999999988865444 3455544421       17899999999999743

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.46  E-value=0.00013  Score=41.14  Aligned_cols=21  Identities=29%  Similarity=0.607  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      |++.|.+|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999998855

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.46  E-value=9.1e-05  Score=50.81  Aligned_cols=20  Identities=30%  Similarity=0.562  Sum_probs=17.9

Q ss_pred             EEEcCCCCChhHHHHHHhcC
Q 031598           12 IILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        12 ~v~G~~~~GKstli~~l~~~   31 (156)
                      +++||+|||||||+++|...
T Consensus        37 AlIGPSGcGKST~LR~lNRm   56 (253)
T COG1117          37 ALIGPSGCGKSTLLRCLNRM   56 (253)
T ss_pred             EEECCCCcCHHHHHHHHHhh
Confidence            89999999999999988644

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.45  E-value=0.0001  Score=47.67  Aligned_cols=26  Identities=23%  Similarity=0.540  Sum_probs=22.9

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhc
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .+...||+|.|.||+||||+..++..
T Consensus         4 ~r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    4 ERERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence            35678999999999999999999873

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.44  E-value=0.00012  Score=46.67  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++|+|+.|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            57999999999999999998775

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.43  E-value=0.00012  Score=49.50  Aligned_cols=24  Identities=21%  Similarity=0.374  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .=|+++|++|||||||+++|....
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            347999999999999999998654

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.41  E-value=0.00072  Score=43.99  Aligned_cols=22  Identities=32%  Similarity=0.555  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHhcCC
Q 031598           11 VIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~   32 (156)
                      ++|.|++|+|||+++..+...-
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHH
Confidence            6899999999999999987553

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.41  E-value=0.00014  Score=54.22  Aligned_cols=56  Identities=21%  Similarity=0.247  Sum_probs=41.9

Q ss_pred             cccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+.+..+...+.+.++++++|+|+.+..     ..|...+.+...     +.|+++|+||+|+...
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-----~~piilV~NK~DLl~k  105 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-----GNPVLLVGNKIDLLPK  105 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-----CCCEEEEEEchhhCCC
Confidence            5567778888888999999999997654     234445544433     5699999999999754

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK04195 replication factor C large subunit; Provisional

Probab=97.40  E-value=0.00057  Score=52.94  Aligned_cols=25  Identities=36%  Similarity=0.537  Sum_probs=21.7

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      ...+++.|++|+||||+++.+.+.-
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            4568999999999999999998653

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.39  E-value=0.00017  Score=48.74  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|++||||||+++.+....
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58999999999999999997653

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.39  E-value=0.0001  Score=49.37  Aligned_cols=24  Identities=33%  Similarity=0.689  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .=+++.||+|+||||++++|....
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            346899999999999999999765

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.39  E-value=0.00015  Score=45.74  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChhHHHHHHhcCC
Q 031598           11 VIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~   32 (156)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999998663

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.39  E-value=0.00063  Score=55.03  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      --++++|+.|+||||.+..+...
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~  208 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAAR  208 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhh
Confidence            45799999999999999988753

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.39  E-value=0.00018  Score=45.36  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=21.8

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKF   33 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~   33 (156)
                      ..++++|++|+||||++..+...-.
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC
Confidence            4689999999999999999986653

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.38  E-value=0.00022  Score=53.14  Aligned_cols=25  Identities=40%  Similarity=0.712  Sum_probs=21.8

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKF   33 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~   33 (156)
                      -+++++|.+|+|||||++.+.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            3689999999999999999987643

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.38  E-value=4e-05  Score=53.06  Aligned_cols=20  Identities=25%  Similarity=0.581  Sum_probs=16.5

Q ss_pred             EEEEEEcCCCCChhHHHHHH
Q 031598            9 LKVIILGDSGVGKTSLMNQY   28 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l   28 (156)
                      +.-+|+|+|||||||..+..
T Consensus         3 fgqvVIGPPgSGKsTYc~g~   22 (290)
T KOG1533|consen    3 FGQVVIGPPGSGKSTYCNGM   22 (290)
T ss_pred             cceEEEcCCCCCccchhhhH
Confidence            44689999999999987654

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=97.37  E-value=8.7e-05  Score=54.92  Aligned_cols=68  Identities=21%  Similarity=0.233  Sum_probs=38.8

Q ss_pred             EEEEEeCCCcccccchhhhhe--ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           58 TLQIWDTAGQERFQSLGVAFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        58 ~~~i~D~~g~~~~~~~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      .++++|..|++.|......-+  .-.|..++++-++-.- .....+ +.-+.-  .    -+.|+++|.||+|.+..+
T Consensus       220 viTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKE-HLgLAL--a----L~VPVfvVVTKIDMCPAN  289 (641)
T KOG0463|consen  220 VITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKE-HLGLAL--A----LHVPVFVVVTKIDMCPAN  289 (641)
T ss_pred             eEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHH-hhhhhh--h----hcCcEEEEEEeeccCcHH
Confidence            578999999998864433222  2346666666554321 000011 111111  1    178999999999999764

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.37  E-value=0.001  Score=49.81  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=19.6

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ...++++|+.|+||||++..+..
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45679999999999999988763

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.36  E-value=0.00019  Score=46.18  Aligned_cols=21  Identities=33%  Similarity=0.806  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      |+++|++||||||+++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999865

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK03839 putative kinase; Provisional

Probab=97.35  E-value=0.00015  Score=48.66  Aligned_cols=22  Identities=36%  Similarity=0.569  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +|+++|.+||||||+...+...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988654

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.35  E-value=0.00036  Score=48.38  Aligned_cols=25  Identities=32%  Similarity=0.409  Sum_probs=21.1

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +...++++.|++|+||||++..|.+
T Consensus        10 ~~~~~~liyG~~G~GKtt~a~~~~~   34 (220)
T TIGR01618        10 RIPNMYLIYGKPGTGKTSTIKYLPG   34 (220)
T ss_pred             CCCcEEEEECCCCCCHHHHHHhcCC
Confidence            3346799999999999999998864

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.35  E-value=0.00016  Score=45.38  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998755

...

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.35  E-value=0.00018  Score=48.24  Aligned_cols=22  Identities=27%  Similarity=0.558  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .++|+|++||||||+++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998754

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.34  E-value=0.00027  Score=48.56  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=21.8

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +...|+|.|++|||||||++.+...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999988753

>TIGR00235 udk uridine kinase

Probab=97.34  E-value=0.00024  Score=48.85  Aligned_cols=26  Identities=27%  Similarity=0.328  Sum_probs=21.6

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ++..-|+|.|++|||||||++.+.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            34466899999999999999998753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.33  E-value=0.00018  Score=53.16  Aligned_cols=23  Identities=39%  Similarity=0.570  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChhHHHHHHhcCCC
Q 031598           11 VIILGDSGVGKTSLMNQYVNKKF   33 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~~   33 (156)
                      +.++|++||||||+++.+.+-..
T Consensus        34 ~~lLGPSGcGKTTlLR~IAGfe~   56 (352)
T COG3842          34 VTLLGPSGCGKTTLLRMIAGFEQ   56 (352)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            57999999999999999987653

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=97.33  E-value=0.0031  Score=47.70  Aligned_cols=22  Identities=14%  Similarity=0.536  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +=+.|+|+-.+||||||.||..
T Consensus        18 IYiGVVGPVRTGKSTFIKRFMe   39 (492)
T PF09547_consen   18 IYIGVVGPVRTGKSTFIKRFME   39 (492)
T ss_pred             eEEEeecCcccCchhHHHHHHH
Confidence            5689999999999999999964

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK07429 phosphoribulokinase; Provisional

Probab=97.32  E-value=0.00028  Score=51.88  Aligned_cols=31  Identities=29%  Similarity=0.413  Sum_probs=26.3

Q ss_pred             CCcccceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      |.+...+.+-|.|.|++|||||||.+.+.+.
T Consensus         1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~l   31 (327)
T PRK07429          1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLADL   31 (327)
T ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHhH
Confidence            5566777899999999999999999888743

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.32  E-value=0.0032  Score=46.70  Aligned_cols=21  Identities=33%  Similarity=0.597  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      .++.|--|+|||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            588899999999999999854

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.32  E-value=0.00022  Score=43.76  Aligned_cols=21  Identities=48%  Similarity=0.800  Sum_probs=18.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHh
Q 031598            9 LKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~   29 (156)
                      -.++++|++|||||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            357999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14530 adenylate kinase; Provisional

Probab=97.31  E-value=0.00022  Score=49.28  Aligned_cols=22  Identities=23%  Similarity=0.551  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .+|+|+|++||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998863

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.31  E-value=0.00021  Score=46.11  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .|.|+|+.++|||||+..+++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999865

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.30  E-value=0.00022  Score=48.10  Aligned_cols=23  Identities=30%  Similarity=0.598  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .++|.|.|++|||||+|+.++..
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~   35 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLR   35 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHH
Confidence            58999999999999999998763

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.29  E-value=0.00023  Score=47.63  Aligned_cols=23  Identities=35%  Similarity=0.689  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -|+++|++||||||+++.|....
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            47999999999999999998753

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>TIGR00101 ureG urease accessory protein UreG

Probab=97.29  E-value=0.00026  Score=48.44  Aligned_cols=23  Identities=35%  Similarity=0.562  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .+|.++|+.|+|||||++++.+.
T Consensus         2 ~~i~i~G~~GsGKTTll~~l~~~   24 (199)
T TIGR00101         2 LKIGVAGPVGSGKTALIEALTRA   24 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999999988754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.29  E-value=0.00023  Score=48.37  Aligned_cols=23  Identities=43%  Similarity=0.635  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -++++|++|||||||+|-+.+--
T Consensus        33 ~vv~lGpSGcGKTTLLnl~AGf~   55 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIAGFV   55 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHhcCc
Confidence            36899999999999999887543

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.28  E-value=0.00022  Score=48.62  Aligned_cols=21  Identities=33%  Similarity=0.607  Sum_probs=18.6

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      |.+.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.28  E-value=0.00023  Score=50.39  Aligned_cols=21  Identities=33%  Similarity=0.514  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      ++++|+.|||||||++++.+-
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            589999999999999999863

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.26  E-value=0.00033  Score=46.79  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..-+.|+|.+|||||||+.++...
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHH
Confidence            346799999999999999999855

>PRK12288 GTPase RsgA; Reviewed

Probab=97.26  E-value=0.001  Score=49.36  Aligned_cols=48  Identities=19%  Similarity=0.117  Sum_probs=38.1

Q ss_pred             eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..++|.+++|++.....++..+..|+.... .      .++|+++|+||+||.++
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-~------~~i~~VIVlNK~DL~~~  165 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACE-T------LGIEPLIVLNKIDLLDD  165 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHH-h------cCCCEEEEEECccCCCc
Confidence            466899999999988788888888766432 1      26799999999999764

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.26  E-value=0.0003  Score=47.19  Aligned_cols=22  Identities=36%  Similarity=0.604  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      -.++++|+.|||||||++.+..
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh
Confidence            4679999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.25  E-value=0.00026  Score=47.59  Aligned_cols=21  Identities=29%  Similarity=0.496  Sum_probs=18.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHh
Q 031598            9 LKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~   29 (156)
                      .-|+++|++||||||+++.+.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            357999999999999999887

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK10646 ADP-binding protein; Provisional

Probab=97.24  E-value=0.0021  Score=42.04  Aligned_cols=22  Identities=27%  Similarity=0.611  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -|++-|+-|+|||||++.+...
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~   51 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQA   51 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999754

>PRK14532 adenylate kinase; Provisional

Probab=97.24  E-value=0.00028  Score=47.64  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +|+++|++||||||+..++...
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988743

>PRK08233 hypothetical protein; Provisional

Probab=97.24  E-value=0.00032  Score=46.93  Aligned_cols=23  Identities=35%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .-|+|.|.+||||||+.+.|...
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            56788999999999999999754

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.24  E-value=0.00027  Score=49.11  Aligned_cols=21  Identities=38%  Similarity=0.642  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      |+++|++|+|||||++.+.+.
T Consensus        33 VaiIG~SGaGKSTLLR~lngl   53 (258)
T COG3638          33 VAIIGPSGAGKSTLLRSLNGL   53 (258)
T ss_pred             EEEECCCCCcHHHHHHHHhcc
Confidence            689999999999999999874

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.23  E-value=0.00029  Score=49.40  Aligned_cols=25  Identities=32%  Similarity=0.646  Sum_probs=22.0

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++|+|.+|||||+|+..++..
T Consensus        12 ~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   12 DPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh
Confidence            4579999999999999999988854

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK02496 adk adenylate kinase; Provisional

Probab=97.23  E-value=0.00034  Score=47.10  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .+++++|++||||||+.+.+..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998864

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.23  E-value=3.2e-05  Score=55.58  Aligned_cols=126  Identities=14%  Similarity=0.151  Sum_probs=69.4

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCC---CCCCCCceee--EEEEEE---------------------------EEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGA--DFLTKE---------------------------VQF   52 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~--~~~~~~---------------------------~~~   52 (156)
                      ++-.++|.-+|.-.-||||++..+.+-..   ..+-....+.  .|....                           +..
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~  114 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR  114 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence            45579999999999999999988765421   1100000000  000000                           000


Q ss_pred             CCe--E----EEEEEEeCCCcccccchhhhheecccEEEEEEECCChh----hHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 031598           53 EDR--L----FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK----SFDNLNNWREEFLIQASPSDPDNFPFVV  122 (156)
Q Consensus        53 ~~~--~----~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~il  122 (156)
                      .+.  .    ..+.++|+||++-.......-..-.|++++++..+.+-    +-+.+  ..-+++.        -..+++
T Consensus       115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL--aaveiM~--------Lkhiii  184 (466)
T KOG0466|consen  115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL--AAVEIMK--------LKHIII  184 (466)
T ss_pred             CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH--HHHHHhh--------hceEEE
Confidence            010  1    23689999999865544433334468888888777632    21211  1112221        225899


Q ss_pred             EEecCCCCCCCceeeeec
Q 031598          123 LGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus       123 v~nK~Dl~~~~~~~~~~~  140 (156)
                      +-||+||..+++..+..+
T Consensus       185 lQNKiDli~e~~A~eq~e  202 (466)
T KOG0466|consen  185 LQNKIDLIKESQALEQHE  202 (466)
T ss_pred             EechhhhhhHHHHHHHHH
Confidence            999999998754433333

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.22  E-value=0.00032  Score=49.03  Aligned_cols=25  Identities=32%  Similarity=0.600  Sum_probs=21.4

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..++|+++|++||||||+...|...
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3478999999999999999988643

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.21  E-value=0.00034  Score=47.00  Aligned_cols=24  Identities=42%  Similarity=0.556  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -.++|+|++|+|||||+|-+.+=.
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF~   49 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGFE   49 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhcc
Confidence            357999999999999999887544

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.20  E-value=0.00036  Score=51.80  Aligned_cols=46  Identities=17%  Similarity=0.156  Sum_probs=29.0

Q ss_pred             CeEEEEEEEeCCCcccccchhhh------heecccEEEEEEECCChhhHHHH
Q 031598           54 DRLFTLQIWDTAGQERFQSLGVA------FYRGADCCVLVYDVNSMKSFDNL   99 (156)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~------~~~~~~~~l~v~d~~~~~~~~~~   99 (156)
                      .+.+.+.|+||.|.-..+...-.      -.-..|-+++|.|++-...-+..
T Consensus       181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Q  232 (483)
T KOG0780|consen  181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQ  232 (483)
T ss_pred             hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHH
Confidence            35578999999994322211111      11246999999999987554443

>PRK13949 shikimate kinase; Provisional

Probab=97.20  E-value=0.00035  Score=46.54  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .+|+++|++||||||+...+..
T Consensus         2 ~~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988764

>PRK06547 hypothetical protein; Provisional

Probab=97.19  E-value=0.00045  Score=46.18  Aligned_cols=26  Identities=35%  Similarity=0.561  Sum_probs=22.1

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .+...|+|.|.+||||||+.+.|...
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45678899999999999999999754

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.19  E-value=0.00038  Score=47.06  Aligned_cols=25  Identities=32%  Similarity=0.513  Sum_probs=21.5

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .-.++++|++||||||+++.+.+.-
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3578999999999999999988653

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.18  E-value=0.00038  Score=48.12  Aligned_cols=23  Identities=39%  Similarity=0.520  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|+|||||++.+.+..
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            56899999999999999998764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.18  E-value=0.00051  Score=46.14  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            57899999999999999999765

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.18  E-value=0.00037  Score=44.67  Aligned_cols=22  Identities=32%  Similarity=0.605  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .|+++|++|+|||++++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999988754

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK14531 adenylate kinase; Provisional

Probab=97.17  E-value=0.0004  Score=46.80  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .+|+++|+|||||||+...+...
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999888643

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.17  E-value=0.00035  Score=47.80  Aligned_cols=23  Identities=30%  Similarity=0.696  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .-|+++|++|||||||++.+.+.
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999999865

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.17  E-value=0.00035  Score=47.76  Aligned_cols=22  Identities=23%  Similarity=0.542  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChhHHHHHHhcCC
Q 031598           11 VIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~   32 (156)
                      |+|.|++||||||+++.+...-
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887553

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.16  E-value=0.00033  Score=48.68  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=18.4

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      |.+.|++|||||||++.+.+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            578999999999999988753

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.15  E-value=0.00044  Score=47.56  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.15  E-value=0.00034  Score=47.29  Aligned_cols=22  Identities=27%  Similarity=0.632  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +|+|+|++||||||+...|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988754

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.15  E-value=0.00044  Score=47.77  Aligned_cols=23  Identities=26%  Similarity=0.593  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|+|||||++.+.+..
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999764

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.15  E-value=0.0004  Score=47.00  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|+|||||++.+.+..
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999998765

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.14  E-value=0.00061  Score=46.68  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PLN02200 adenylate kinase family protein

Probab=97.13  E-value=0.00059  Score=47.88  Aligned_cols=24  Identities=29%  Similarity=0.481  Sum_probs=20.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ....|+++|+|||||||+..++..
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999888864

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.13  E-value=0.00047  Score=47.47  Aligned_cols=23  Identities=30%  Similarity=0.590  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|+|||||++.+.+..
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999864

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.13  E-value=0.00042  Score=47.65  Aligned_cols=23  Identities=35%  Similarity=0.470  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|+|||||++.+.+..
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            67999999999999999998764

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.12  E-value=0.00047  Score=48.25  Aligned_cols=23  Identities=35%  Similarity=0.531  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.12  E-value=0.00074  Score=44.65  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998775

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.12  E-value=0.0005  Score=47.07  Aligned_cols=23  Identities=35%  Similarity=0.496  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|+|||||++.+.+..
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        26 MYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999999865

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.11  E-value=0.00077  Score=42.45  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      --|++-|+-|+|||||++.+...
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~   38 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARA   38 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            45799999999999999988743

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.11  E-value=0.00045  Score=46.35  Aligned_cols=21  Identities=33%  Similarity=0.596  Sum_probs=18.5

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      |+++|++||||||+...+...
T Consensus         2 i~i~G~pGsGKst~a~~la~~   22 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVEN   22 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999988643

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.11  E-value=0.00049  Score=47.69  Aligned_cols=23  Identities=35%  Similarity=0.576  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          28 IVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998764

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.11  E-value=0.00051  Score=47.21  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          28 IFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999864

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01351 adk adenylate kinases

Probab=97.11  E-value=0.0004  Score=47.85  Aligned_cols=21  Identities=24%  Similarity=0.585  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      ||+|+|++||||||+...|..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.10  E-value=0.00051  Score=47.33  Aligned_cols=23  Identities=30%  Similarity=0.470  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|+|||||++.+.+..
T Consensus        30 ~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        30 FLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	156
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		6e-61
1vg1_A	185	Gdp-bound Rab7 Length = 185		7e-61
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-60
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		6e-60
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		8e-54
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		5e-41
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-39
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		1e-39
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		7e-39
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-25
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		2e-25
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		2e-25
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		4e-25
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		4e-25
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		5e-25
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		5e-25
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		8e-25
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		8e-25
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		1e-24
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		1e-24
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-24
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-24
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		2e-24
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-24
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		3e-24
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		5e-24
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		6e-24
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		6e-24
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		6e-24
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		6e-24
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		7e-24
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		7e-24
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		7e-24
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-23
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-23
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-23
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-23
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-23
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		2e-23
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-23
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-23
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-23
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		3e-23
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		3e-23
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		3e-23
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		4e-23
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		4e-23
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		5e-23
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		5e-23
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		6e-23
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		6e-23
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		6e-23
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		6e-23
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		6e-23
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		7e-23
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		7e-23
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		8e-23
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-22
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-22
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		1e-22
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		1e-22
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		2e-22
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-22
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-22
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		2e-22
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-22
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		2e-22
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		2e-22
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		4e-22
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		4e-22
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		6e-22
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		6e-22
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		7e-22
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		7e-22
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		9e-22
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		1e-21
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-21
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-21
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-21
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-21
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		2e-21
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-21
2efc_B	181	Ara7-GdpATVPS9A Length = 181		2e-21
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-21
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		3e-21
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		3e-21
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		3e-21
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-21
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		4e-21
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		4e-21
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		4e-21
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		5e-21
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		8e-21
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-20
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		2e-20
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-20
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		9e-20
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		1e-19
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-19
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-19
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		4e-18
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		6e-17
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		6e-17
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		6e-17
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		6e-17
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		6e-17
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		8e-17
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		8e-17
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-16
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		1e-16
1byu_A	216	Canine Gdp-Ran Length = 216		2e-16
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-16
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		3e-16
3icq_B	171	Karyopherin Nuclear State Length = 171		4e-16
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		4e-16
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		5e-16
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		5e-16
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		5e-16
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		5e-16
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		4e-15
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		9e-15
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-14
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-14
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-14
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		1e-14
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-14
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-14
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-14
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		3e-14
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		4e-14
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		4e-14
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-13
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		4e-13
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		4e-13
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		4e-13
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		1e-12
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-12
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-12
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		3e-12
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		3e-12
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		3e-12
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-12
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		5e-12
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		6e-12
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		6e-12
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		9e-12
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-11
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		3e-11
1mh1_A	186	Small G-Protein Length = 186		3e-11
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		3e-11
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		3e-11
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		3e-11
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		3e-11
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		3e-11
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		3e-11
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		3e-11
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		3e-11
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		3e-11
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		3e-11
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		3e-11
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		3e-11
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		3e-11
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		3e-11
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		3e-11
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		3e-11
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-11
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		3e-11
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		4e-11
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		4e-11
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		5e-11
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		6e-11
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		6e-11
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		7e-11
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		8e-11
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		8e-11
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		8e-11
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		8e-11
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		9e-11
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		9e-11
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		9e-11
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		9e-11
4q21_A	189	Molecular Switch For Signal Transduction: Structura		1e-10
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-10
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-10
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-10
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-10
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		1e-10
6q21_A	171	Molecular Switch For Signal Transduction: Structura		1e-10
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		1e-10
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		1e-10
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		1e-10
2kb0_A	178	Cdc42(T35a) Length = 178		1e-10
1wq1_R	166	Ras-Rasgap Complex Length = 166		1e-10
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-10
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		1e-10
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-10
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		2e-10
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		2e-10
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-10
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		2e-10
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-10
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		2e-10
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		2e-10
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-10
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		2e-10
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		3e-10
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		3e-10
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		3e-10
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		3e-10
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		3e-10
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		3e-10
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		3e-10
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		3e-10
1s1c_A	183	Crystal Structure Of The Complex Between The Human		3e-10
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		3e-10
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		3e-10
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		3e-10
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		3e-10
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		3e-10
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		3e-10
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		3e-10
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		3e-10
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		3e-10
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		4e-10
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		4e-10
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		4e-10
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		4e-10
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-10
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		4e-10
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		4e-10
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		4e-10
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		4e-10
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-10
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		5e-10
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		5e-10
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		5e-10
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		5e-10
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		5e-10
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		6e-10
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		6e-10
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		6e-10
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		6e-10
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		7e-10
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		8e-10
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		8e-10
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		8e-10
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		9e-10
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		1e-09
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-09
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-09
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-09
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-09
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-09
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		1e-09
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		1e-09
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		1e-09
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-09
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-09
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-09
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-09
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		1e-09
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		2e-09
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-09
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-09
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-09
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		4e-09
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		4e-09
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		4e-09
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		5e-09
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		8e-09
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		2e-08
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		2e-08
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		4e-08
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		6e-08
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		7e-08
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		8e-08
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		9e-08
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		9e-08
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		1e-07
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		8e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		2e-06
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		4e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-05
3qq5_A	423	Crystal Structure Of The [fefe]-Hydrogenase Maturat		3e-05
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		4e-05
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		4e-05
3ihw_A	184	Crystal Structure Of The Ras-Like Domain Of Centg3		4e-05
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		5e-05
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		7e-05
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		8e-05
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		9e-05
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		2e-04
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		2e-04
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		2e-04
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		2e-04
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		2e-04
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		3e-04
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		3e-04
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		3e-04
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		3e-04
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		3e-04
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		4e-04
3dpu_A	535	Roccor Domain Tandem Of Rab Family Protein (Roco) L		5e-04
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		6e-04
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		6e-04
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		6e-04
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		6e-04
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		7e-04

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  229 bits (583), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 106/131 (80%), Positives = 119/131 (90%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKIDVDG 131
           VVLGNKID++ 
Sbjct: 121 VVLGNKIDLEN 131

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  229 bits (583), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 106/130 (81%), Positives = 119/130 (91%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKIDVD 130
           VVLGNKID++
Sbjct: 121 VVLGNKIDLE 130

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  228 bits (580), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 106/131 (80%), Positives = 118/131 (90%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKIDVDG 131
           VVLGNKID + 
Sbjct: 121 VVLGNKIDFEN 131

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  225 bits (574), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 105/131 (80%), Positives = 118/131 (90%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAG ERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPF
Sbjct: 61  IWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKIDVDG 131
           VVLGNKID++ 
Sbjct: 121 VVLGNKIDLEN 131

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  205 bits (522), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 92/131 (70%), Positives = 114/131 (87%), Gaps = 1/131 (0%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTL 59
           M SR++ +LKVIILGDSGVGKTSLM++YVN K+S QYKATIGADFLTKEV  + D++ T+
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
           Q+WDTAGQERFQSLGVAFYRGADCCVLVYDV +  SF+N+ +WR+EFL+ A+ + P+ FP
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120
Query: 120 FVVLGNKIDVD 130
           FV+LGNKID +
Sbjct: 121 FVILGNKIDAE 131

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  162 bits (411), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 97/126 (76%)
Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
           S +  LLKVI+LGD GVGK+SLMN+YV  KF +Q   TIG +FL ++++ + R  TLQIW
Sbjct: 2   SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIW 61
Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           DTAGQERF+SL   FYRGADCC+L + V+  +SF+NL NW++EF+  A   DP++FPFVV
Sbjct: 62  DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVV 121
Query: 123 LGNKID 128
           LGNK+D
Sbjct: 122 LGNKVD 127

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  158 bits (399), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 69/125 (55%), Positives = 95/125 (76%)
Query: 5   RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           + +L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDT
Sbjct: 6   KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 65
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
           AGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LG
Sbjct: 66  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 125
Query: 125 NKIDV 129
           NKID+
Sbjct: 126 NKIDI 130

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  158 bits (399), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 69/125 (55%), Positives = 95/125 (76%)
Query: 5   RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           + +L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDT
Sbjct: 4   KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 63
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
           AGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LG
Sbjct: 64  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 125 NKIDV 129
           NKID+
Sbjct: 124 NKIDI 128

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  155 bits (393), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 95/125 (76%)
Query: 5   RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           + +L K+I+LGD GVGK+SLMN+YV  KF +Q   TIG +FL K+++ +    T+QIWDT
Sbjct: 8   KSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 67
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
           AGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LG
Sbjct: 68  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 127
Query: 125 NKIDV 129
           NK D+
Sbjct: 128 NKTDI 132

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 123
Query: 129 VDGGNSRVVCFGEEGS 144
           +   N R V F E  S
Sbjct: 124 L--ANKRAVDFQEAQS 137

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVCFGEEGS 144
           +   N R V F E  S
Sbjct: 123 L--ANKRAVDFQEAQS 136

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 123
Query: 129 VDGGNSRVVCFGEEGS 144
           +   N R V F E  S
Sbjct: 124 L--ANKRAVDFQEAQS 137

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVCFGEEGS 144
           +   N R V F E  S
Sbjct: 123 L--ANKRAVDFQEAQS 136

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVCFGEEGS 144
           +   N R V F E  S
Sbjct: 123 L--ANKRAVDFQEAQS 136

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  109 bits (273), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVCFGEEGS 144
           +   N R V F E  S
Sbjct: 123 L--ANKRAVDFQEAQS 136

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  109 bits (273), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVCFGEEGS 144
           +   N R V F E  S
Sbjct: 123 L--ANKRAVDFQEAQS 136

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  109 bits (272), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVCFGEEGS 144
           +   N R V F E  S
Sbjct: 123 L--ANKRAVDFQEAQS 136

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  109 bits (272), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 80/133 (60%), Gaps = 6/133 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ +  +F    NW +E   QASP    N    + GNK D
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKAD 119
Query: 129 VDGGNSRVVCFGE 141
           +   + R V F E
Sbjct: 120 L--ASKRAVEFQE 130

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 81/132 (61%), Gaps = 6/132 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER
Sbjct: 10  KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 69
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           + SL   +YRGA   ++VYD+ + ++F     W +E   QASPS        + GNK D+
Sbjct: 70  YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS----IVIALAGNKADL 125
Query: 130 DGGNSRVVCFGE 141
              N R+V + E
Sbjct: 126 --ANKRMVEYEE 135

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S++ ++V   F      TIGA F+TK VQ+++ L    IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF++L   +YRG+   ++VYD+   ++F  L NW  E      PS        + GNK D
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS----IVVAIAGNKCD 121
Query: 129 V 129
           +
Sbjct: 122 L 122

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 81/123 (65%), Gaps = 4/123 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS     +   ++LGNK 
Sbjct: 66  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKC 121
Query: 128 DVD 130
           DV+
Sbjct: 122 DVN 124

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 81/123 (65%), Gaps = 4/123 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS     +   ++LGNK 
Sbjct: 68  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKC 123
Query: 128 DVD 130
           DV+
Sbjct: 124 DVN 126

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/136 (41%), Positives = 81/136 (59%), Gaps = 6/136 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 121
Query: 129 VDGGNSRVVCFGEEGS 144
           +   N R V F E  S
Sbjct: 122 L--ANKRAVDFQEAQS 135

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 72/121 (59%), Gaps = 4/121 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S+M ++V   F      TIGA F+TK VQ+++ L    IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF++L   +YRG+   ++VYD+   ++F  L NW  E      PS        + GNK D
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS----IVVAIAGNKCD 122
Query: 129 V 129
           +
Sbjct: 123 L 123

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 81/122 (66%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK++L++++   +F+   K+TIG +F T+ ++ E +    QIWDTAGQ
Sbjct: 13  LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   ++VYD++   S++N N+W  E    A     DN    ++GNK 
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD----DNVAVGLIGNKS 128
Query: 128 DV 129
           D+
Sbjct: 129 DL 130

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  106 bits (264), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 83/123 (67%), Gaps = 5/123 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAG 66
           L K++++GDSGVGK++L++++   +F+ + K+TIG +F TK +Q ++ ++   QIWDTAG
Sbjct: 7   LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QER++++  A+YRGA   +LVYD+    SF+N+  W +E    A      N   +++GNK
Sbjct: 67  QERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADS----NIVILLVGNK 122
Query: 127 IDV 129
            D+
Sbjct: 123 SDL 125

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  106 bits (264), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S++ ++V   F +    TIGA F+TK V   + L    IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF SL   +YRG+   V+VYD+    SF  L  W +E         P+N    + GNK D
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL----KEHGPENIVMAIAGNKCD 139
Query: 129 V 129
           +
Sbjct: 140 L 140

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  106 bits (264), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 6/133 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TI A FLT+ V  +D     +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ +  +F    NW +E   QASP    N    + GNK D
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKAD 121
Query: 129 VDGGNSRVVCFGE 141
           +   + R V F E
Sbjct: 122 L--ASKRAVEFQE 132

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  106 bits (264), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 87/139 (62%), Gaps = 7/139 (5%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  +++ Y +TIG DF  + +  E++   LQIWDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV    SFDN+  W +E    A     +N   +++GNK 
Sbjct: 69  ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYA----MENVNKLLVGNKC 124
Query: 128 DVDGGNSRVVCFGEEGSSM 146
           D+    S+ V   +EG  +
Sbjct: 125 DL---VSKRVVTSDEGREL 140

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  106 bits (264), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 6/133 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ +  +F    NW +E   QASP    N    + GNK D
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKAD 121
Query: 129 VDGGNSRVVCFGE 141
           +   + R V F E
Sbjct: 122 L--ASKRAVEFQE 132

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  105 bits (263), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 77/121 (63%), Gaps = 5/121 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K++++G+  VGK+S++ +Y    F+  YK TIG DFL +++Q  D    L +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            F ++  A+YRGA  CVLV+     +SF+ +++WRE+ + +       + P  ++ NKID
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKID 120
Query: 129 V 129
           +
Sbjct: 121 L 121

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  105 bits (263), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 81/122 (66%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK 
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 144
Query: 128 DV 129
           D+
Sbjct: 145 DL 146

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  105 bits (263), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 81/122 (66%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 20  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK 
Sbjct: 80  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 135
Query: 128 DV 129
           D+
Sbjct: 136 DL 137

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 83/122 (68%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK++L++++   +F+ + K+TIG +F T+ ++ E++    QIWDTAG 
Sbjct: 10  LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   ++VYD++   S++N N+W    L +   +  DN    ++GNK 
Sbjct: 70  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW----LTELRENADDNVAVGLIGNKS 125
Query: 128 DV 129
           D+
Sbjct: 126 DL 127

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 81/122 (66%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 131
Query: 128 DV 129
           D+
Sbjct: 132 DL 133

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 4/122 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+VII+G  GVGKTSLM ++ +  F    K+T+G DF  K V+   +   LQIWDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF S+  A+YR A   +LVYD+   ++FD+L  W +     AS    ++   +++GNK+D
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLD 142
Query: 129 VD 130
            +
Sbjct: 143 CE 144

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 81/122 (66%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 25  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK 
Sbjct: 85  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 140
Query: 128 DV 129
           D+
Sbjct: 141 DL 142

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 80/122 (65%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++ +  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK 
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 120
Query: 128 DV 129
           D+
Sbjct: 121 DL 122

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 81/122 (66%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 121
Query: 128 DV 129
           D+
Sbjct: 122 DL 123

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 81/122 (66%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 121
Query: 128 DV 129
           D+
Sbjct: 122 DL 123

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 81/122 (66%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 33  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK 
Sbjct: 93  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 148
Query: 128 DV 129
           D+
Sbjct: 149 DL 150

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 80/122 (65%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK  L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 131
Query: 128 DV 129
           D+
Sbjct: 132 DL 133

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 89/149 (59%), Gaps = 10/149 (6%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V  + +   LQIWDTAGQ
Sbjct: 21  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E F+S+  ++YRGA   +LVYD+   ++F++L +W E+    A      N   +++GNK 
Sbjct: 81  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED----ARQHSSSNMVIMLIGNKS 136
Query: 128 DVDGGNSRVVCFGEEGSSMVCLQRKYSLL 156
           D++   SR     EEG +     R++ L+
Sbjct: 137 DLE---SRRDVKREEGEAFA---REHGLI 159

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  103 bits (258), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 84/142 (59%), Gaps = 8/142 (5%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T +K+++LG++ VGK+S++ ++V+  F+   + TIGA FLT+ V   +     +IWDTAG
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF SL   +YR A   ++VYDV   +SF    +W +E   QAS     +    ++GNK
Sbjct: 62  QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS----KDIIIALVGNK 117
Query: 127 IDV--DGGNSRVVCFGEEGSSM 146
           ID   +GG  +V    EEG  +
Sbjct: 118 IDXLQEGGERKVAR--EEGEKL 137

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  103 bits (258), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 81/134 (60%), Gaps = 6/134 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G++G GK+ L++Q++ KKF +    TIG +F +K +    +   LQIWDTAGQ
Sbjct: 10  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YRGA   +LVYD+ S ++++ L NW    L  A      N   ++ GNK 
Sbjct: 70  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVIILCGNKK 125
Query: 128 DVDGGNSRVVCFGE 141
           D+D    R V F E
Sbjct: 126 DLDA--DREVTFLE 137

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  103 bits (257), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 81/134 (60%), Gaps = 6/134 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G++G GK+ L++Q++ KKF +    TIG +F +K +    +   LQIWDTAGQ
Sbjct: 11  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YRGA   +LVYD+ S ++++ L NW    L  A      N   ++ GNK 
Sbjct: 71  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVIILCGNKK 126
Query: 128 DVDGGNSRVVCFGE 141
           D+D    R V F E
Sbjct: 127 DLDA--DREVTFLE 138

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  103 bits (257), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 88/140 (62%), Gaps = 8/140 (5%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           +++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQIWDTAG
Sbjct: 2   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF+++  A+YRGA   +LVYD+   ++F N+  W +     A+    D    +++GNK
Sbjct: 62  QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 117
Query: 127 IDVDGGNSRVVCFGEEGSSM 146
            D++   +RVV   ++G ++
Sbjct: 118 SDME---TRVVT-ADQGEAL 133

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  103 bits (256), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 80/120 (66%), Gaps = 4/120 (3%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK D+
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDL 116

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  103 bits (256), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 87/149 (58%), Gaps = 10/149 (6%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + +  + +   LQIWDTAGQ
Sbjct: 10  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 69
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E F+S+  ++YRGA   +LVYD+    +F++L  W E+    A      N   +++GNK 
Sbjct: 70  ESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLED----ARQHSNSNMVIMLIGNKS 125
Query: 128 DVDGGNSRVVCFGEEGSSMVCLQRKYSLL 156
           D++   SR     EEG +     R++ L+
Sbjct: 126 DLE---SRREVKKEEGEAFA---REHGLI 148

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  103 bits (256), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 80/122 (65%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK 
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 144
Query: 128 DV 129
           D+
Sbjct: 145 DL 146

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  103 bits (256), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 88/140 (62%), Gaps = 8/140 (5%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           +++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQ+WDTAG
Sbjct: 6   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 65
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF+++  A+YRGA   +LVYDV   ++F N+  W +     A+    D    +++GNK
Sbjct: 66  QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 121
Query: 127 IDVDGGNSRVVCFGEEGSSM 146
            D++   +RVV   ++G ++
Sbjct: 122 SDME---TRVVT-ADQGEAL 137

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  103 bits (256), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 76/122 (62%), Gaps = 3/122 (2%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T LK++I+G+SGVGK+SL+ ++ +  F  +  ATIG DF  K +  +     L IWDTAG
Sbjct: 14  TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 73
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF++L  ++YRGA   +LVYDV    +F  L+NW  E     + +D  N    ++GNK
Sbjct: 74  QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN---XLVGNK 130
Query: 127 ID 128
           ID
Sbjct: 131 ID 132

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  102 bits (255), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 88/140 (62%), Gaps = 8/140 (5%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           +++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQ+WDTAG
Sbjct: 19  SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 78
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF+++  A+YRGA   +LVYDV   ++F N+  W +     A+    D    +++GNK
Sbjct: 79  QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 134
Query: 127 IDVDGGNSRVVCFGEEGSSM 146
            D++   +RVV   ++G ++
Sbjct: 135 SDME---TRVVT-ADQGEAL 150

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  102 bits (255), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 80/122 (65%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 8   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK 
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 123
Query: 128 DV 129
           D+
Sbjct: 124 DL 125

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  102 bits (255), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 80/122 (65%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    +N   +++GNK 
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKS 124
Query: 128 DV 129
           D+
Sbjct: 125 DL 126

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  102 bits (255), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 5/121 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++I+GDSGVGK+SL+ ++ +  FS  Y  TIG DF  + V+       LQIWDTAGQ
Sbjct: 9   LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++   +YRG    ++VYDV S +SF N+  W  E        + D+   +++GNK 
Sbjct: 69  ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-----NQNCDDVCRILVGNKN 123
Query: 128 D 128
           D
Sbjct: 124 D 124

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  102 bits (254), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 80/122 (65%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    +N   +++GNK 
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKS 124
Query: 128 DV 129
           D+
Sbjct: 125 DL 126

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 86/140 (61%), Gaps = 8/140 (5%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           ++ K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQIWDTAG
Sbjct: 2   SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF+++  A+YRGA   +LVYD+   ++F N+  W +     A+    D    +++GNK
Sbjct: 62  QERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 117
Query: 127 IDVDGGNSRVVCFGEEGSSM 146
            D +   +RVV   ++G ++
Sbjct: 118 SDXE---TRVVT-ADQGEAL 133

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 79/122 (64%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N    ++GNK 
Sbjct: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIXLVGNKS 126
Query: 128 DV 129
           D+
Sbjct: 127 DL 128

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 80/133 (60%), Gaps = 4/133 (3%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQER
Sbjct: 4   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F+SL  ++ R +   V+VYD+ ++ SF   + W ++   +       +   +++GNK D+
Sbjct: 64  FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGS----DVIIMLVGNKTDL 119
Query: 130 DGGNSRVVCFGEE 142
                  +  GE+
Sbjct: 120 ADKRQITIEEGEQ 132

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 79/122 (64%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N    ++GNK 
Sbjct: 65  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIXLVGNKS 120
Query: 128 DV 129
           D+
Sbjct: 121 DL 122

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 86/140 (61%), Gaps = 8/140 (5%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           ++ K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQ+WDTAG
Sbjct: 2   SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 61
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF+++  A+YRGA   +LVYDV   ++F N+  W +     A+    D    +++GNK
Sbjct: 62  QERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 117
Query: 127 IDVDGGNSRVVCFGEEGSSM 146
            D +   +RVV   ++G ++
Sbjct: 118 SDXE---TRVVT-ADQGEAL 133

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 80/122 (65%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++G K 
Sbjct: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGIKC 123
Query: 128 DV 129
           D+
Sbjct: 124 DL 125

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 75/121 (61%), Gaps = 4/121 (3%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG+  VGKTSL+ +Y   KF++++  T+GA FLTK++    +   L IWDTAGQER
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F +LG  +YR ++  +LVYD+    SF  + NW +E          +     ++GNKID+
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL----RKMLGNEICLCIVGNKIDL 123
Query: 130 D 130
           +
Sbjct: 124 E 124

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+SL  ++ R +   V+VYD+ ++ SF     W ++   +       +   +++GNK D
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTD 122
Query: 129 VDGGNSRVVCFGEEG 143
           +   + R V   EEG
Sbjct: 123 L--ADKRQVSI-EEG 134

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 79/119 (66%), Gaps = 4/119 (3%)
Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           ++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 71  QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           +++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK D+
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDL 115

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+SL  ++ R +   V+VYD+ ++ SF     W ++   +       +   +++GNK D
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTD 117
Query: 129 VDGGNSRVVCFGEEG 143
           +   + R V   EEG
Sbjct: 118 L--ADKRQVSI-EEG 129

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 80/134 (59%), Gaps = 6/134 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G++G GK+ L++Q++ KKF +    TIG +F +K +    +   LQIWDTAG 
Sbjct: 8   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YRGA   +LVYD+ S ++++ L NW    L  A      N   ++ GNK 
Sbjct: 68  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVIILCGNKK 123
Query: 128 DVDGGNSRVVCFGE 141
           D+D    R V F E
Sbjct: 124 DLDA--DREVTFLE 135

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  100 bits (248), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 75/121 (61%), Gaps = 4/121 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+SL  ++ R +   V+VYD+ +  SF   + W ++   +       +   +++GNK D
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKTD 130
Query: 129 V 129
           +
Sbjct: 131 L 131

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  100 bits (248), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 76/123 (61%), Gaps = 4/123 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G +G GK+ L++Q++  KF      TIG +F ++ V    +   LQIWDTAGQ
Sbjct: 25  LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YRGA   +LVYD+ S +++++L  W  +    ASP    N   ++ GNK 
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKK 140
Query: 128 DVD 130
           D+D
Sbjct: 141 DLD 143

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 99.8 bits (247), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 87/139 (62%), Gaps = 6/139 (4%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M S    L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQ
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERF+++  ++YRG+   ++VYDV   +SF+ +  W +E    A+ +       
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST----VLK 116
Query: 121 VVLGNKIDVDGGNSRVVCF 139
           +++GNK D+   + RVV +
Sbjct: 117 LLVGNKCDLK--DKRVVEY 133

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 99.8 bits (247), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 86/137 (62%), Gaps = 6/137 (4%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M S    L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQ
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERF+++  ++YRG+   ++VYDV   +SF+ +  W +E    A+ +       
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST----VLK 116
Query: 121 VVLGNKIDVDGGNSRVV 137
           +++GNK D+   + RVV
Sbjct: 117 LLVGNKCDLK--DKRVV 131

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 99.4 bits (246), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 78/130 (60%), Gaps = 4/130 (3%)
Query: 2   PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
           P     + K II+GD GVGK+ L++Q+  KKF      TIG +F T+ ++   +   LQI
Sbjct: 9   PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 68
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
           WDTAGQERF+++  ++YRGA   ++VYD+    ++++L++W    L  A      N   +
Sbjct: 69  WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW----LTDARNLTNPNTVII 124
Query: 122 VLGNKIDVDG 131
           ++GNK D++ 
Sbjct: 125 LIGNKADLEA 134

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 99.4 bits (246), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 85/140 (60%), Gaps = 7/140 (5%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K +   D+   LQIWDTAGQ
Sbjct: 5   MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +L+YD+ + +SF+ + +W      Q      DN   +++GNK 
Sbjct: 65  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS----TQIKTYSWDNAQVLLVGNKC 120
Query: 128 DVDGGNSRVVCFGEEGSSMV 147
           D++  + RVV   E G  + 
Sbjct: 121 DME--DERVVS-SERGRQLA 137

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 99.0 bits (245), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 80/132 (60%), Gaps = 13/132 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +            
Sbjct: 25  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD 
Sbjct: 85  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD- 143
Query: 118 FPFVVLGNKIDV 129
              V++GNK D+
Sbjct: 144 --IVLIGNKADL 153

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 85/132 (64%), Gaps = 6/132 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQIWDTAGQ
Sbjct: 21  LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRG+   ++VYDV   +SF+ +  W +E    A+ +       +++GNK 
Sbjct: 81  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST----VLKLLVGNKC 136
Query: 128 DVDGGNSRVVCF 139
           D+   + RVV +
Sbjct: 137 DLK--DKRVVEY 146

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 81/130 (62%), Gaps = 6/130 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K V   ++   LQIWDTAGQ
Sbjct: 23  MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +L+YD+ + +SF+ + +W      Q      DN   +++GNK 
Sbjct: 83  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW----ATQIKTYSWDNAQVILVGNKC 138
Query: 128 DVDGGNSRVV 137
           D++    RVV
Sbjct: 139 DME--EERVV 146

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 74/121 (61%), Gaps = 4/121 (3%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG+  VGKTSL+ +Y   KF++++  T+ A FLTK++    +   L IWDTAGQER
Sbjct: 22  KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F +LG  +YR ++  +LVYD+    SF  + NW +E          +     ++GNKID+
Sbjct: 82  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL----RKMLGNEICLCIVGNKIDL 137
Query: 130 D 130
           +
Sbjct: 138 E 138

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 81/133 (60%), Gaps = 13/133 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLF 57
           L+K + LGDSGVGKTS++ QY + KF++++  T+G DF  K V +            +  
Sbjct: 11  LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAG ERF+SL  AF+R A   +L++D+ + +SF N+ NW  +  + A   +PD 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD- 129
Query: 118 FPFVVLGNKIDVD 130
              V+ GNK D++
Sbjct: 130 --IVLCGNKSDLE 140

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 6/137 (4%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +P     + K++++G+S VGKTS + +Y +  F+  + +T+G DF  K V   D+   LQ
Sbjct: 15  VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQ 74
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQER++++  A+YRGA   +L+YD+ + +SF  + +W      Q      DN   
Sbjct: 75  IWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDW----ATQIKTYSWDNAQV 130
Query: 121 VVLGNKIDVDGGNSRVV 137
           +++GNK D++  + RVV
Sbjct: 131 ILVGNKCDLE--DERVV 145

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 80/134 (59%), Gaps = 7/134 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAG ER
Sbjct: 8   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 67
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F+SL  ++ R +   V+VYD+ ++ SF     W ++   +       +   +++GNK D+
Sbjct: 68  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDL 123
Query: 130 DGGNSRVVCFGEEG 143
              + R V   EEG
Sbjct: 124 --ADKRQVSI-EEG 134

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 74/121 (61%), Gaps = 4/121 (3%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG+  VGKTSL+ +Y   KF++++  T+ A FLTK++    +   L IWDTAGQER
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F +LG  +YR ++  +LVYD+    SF  + NW +E          +     ++GNKID+
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL----RKMLGNEICLCIVGNKIDL 123
Query: 130 D 130
           +
Sbjct: 124 E 124

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 4/120 (3%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ +   D     +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           + SL   +YRGA   ++V+DV +  SF+    W +E   Q +P    N    + GNK D+
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNKSDL 129

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+SL  ++ R +   V+VYD+ ++ SF     W ++   +       +   +++GNK D
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTD 129
Query: 129 VDGGNSRVVCFGEEG 143
           +   + R V   EEG
Sbjct: 130 L--ADKRQVSI-EEG 141

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G++GVGKT L+ ++    F     ATIG DF+ K V+       LQIWDTAGQ
Sbjct: 26  LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YR A+  +L YD+   +SF  L  W  E    AS    +    V++GNKI
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS----NKVITVLVGNKI 141
Query: 128 DV 129
           D+
Sbjct: 142 DL 143

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 80/134 (59%), Gaps = 7/134 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAG ER
Sbjct: 18  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 77
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F+SL  ++ R +   V+VYD+ ++ SF     W ++   +       +   +++GNK D+
Sbjct: 78  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG----SDVIIMLVGNKTDL 133
Query: 130 DGGNSRVVCFGEEG 143
              + R V   EEG
Sbjct: 134 --ADKRQVSI-EEG 144

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 79/132 (59%), Gaps = 13/132 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +            
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAG ERF+SL  AF+R A   +L +D+ S +SF N+ NW  +    A   +PD 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKIDV 129
              V++GNK D+
Sbjct: 130 --IVLIGNKADL 139

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 80/132 (60%), Gaps = 13/132 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +            
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAG ERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKIDV 129
              V++GNK D+
Sbjct: 130 --IVLIGNKADL 139

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 79/132 (59%), Gaps = 13/132 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +            
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAG ERF+SL  AF+R A   +L +D+ S +SF N+ NW  +    A   +PD 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKIDV 129
              V++GNK D+
Sbjct: 130 --IVLIGNKADL 139

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 80/132 (60%), Gaps = 13/132 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +            
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAG ERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKIDV 129
              V++GNK D+
Sbjct: 130 --IVLIGNKADL 139

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 96.7 bits (239), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 83/134 (61%), Gaps = 7/134 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LG+  VGKTS++ ++    F N Y++TIG DFL+K +  ++    LQ+WDTAGQER
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F+SL  ++ R +   ++VYD+ + +SF+N   W ++ L +       +    ++GNK D+
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK----DVIIALVGNKTDL 118
Query: 130 DGGNSRVVCFGEEG 143
             G+ R V + EEG
Sbjct: 119 --GDLRKVTY-EEG 129

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 77/130 (59%), Gaps = 4/130 (3%)
Query: 2   PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
           P     + K II+GD GVGK+ L++Q+  KKF      TIG +F T+ ++   +   LQI
Sbjct: 24  PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 83
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
           WDTAGQ RF+++  ++YRGA   ++VYD+    ++++L++W    L  A      N   +
Sbjct: 84  WDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW----LTDARNLTNPNTVII 139
Query: 122 VLGNKIDVDG 131
           ++GNK D++ 
Sbjct: 140 LIGNKADLEA 149

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 95.9 bits (237), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 4/130 (3%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +P  R  + K+I++GDS VGKT L  ++   +F ++ +ATIG DF  + V  +     +Q
Sbjct: 22  LPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 81
Query: 61  IWDTAGQERF-QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
           +WDTAGQERF +S+   +YR     V VYD  +  SF +L  W EE       +D    P
Sbjct: 82  LWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAND---IP 138
Query: 120 FVVLGNKIDV 129
            +++GNK D+
Sbjct: 139 RILVGNKCDL 148

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 74/126 (58%), Gaps = 4/126 (3%)
Query: 5   RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           R  + K+I++GDS VGKT L  ++   +F ++ +ATIG DF  + V  +     +Q+WDT
Sbjct: 17  RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDT 76
Query: 65  AGQERF-QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL 123
           AGQERF +S+   +YR     V VYD+ +M SF +L  W EE       +D    P +++
Sbjct: 77  AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRILV 133
Query: 124 GNKIDV 129
           GNK D+
Sbjct: 134 GNKCDL 139

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 7/129 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           KV+++GDSGVGKT L+ ++ +  F +  + +T+G DF  K +  +     LQ+WDTAGQE
Sbjct: 12  KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+S+  A+YR A   +L+YDV +  SFDN+  W    L +       +   ++LGNK  
Sbjct: 72  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAW----LTEIHEYAQHDVALMLLGNK-- 125
Query: 129 VDGGNSRVV 137
           VD  + RVV
Sbjct: 126 VDSAHERVV 134

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K +   D+   LQIWDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R++++  A+YRGA   +L YD+ + +SF+ + +W      Q      DN   +++GNK D
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWS----TQIKTYSWDNAQVLLVGNKCD 124
Query: 129 VDGGNSRVVCFGEEGSSMV 147
            +  + RVV   E G  + 
Sbjct: 125 XE--DERVVS-SERGRQLA 140

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 92.4 bits (228), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 75/122 (61%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GD+ VGKT ++ ++    FS +  +TIG DF  K ++ + +   LQIWDTAGQ
Sbjct: 29  LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YR A+  +L YD+    SF ++ +W E+    A      N   +++GNK 
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG----SNIVQLLIGNKS 144
Query: 128 DV 129
           D+
Sbjct: 145 DL 146

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 73/120 (60%), Gaps = 4/120 (3%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++ GD+ VGK+S + +    +F     AT+G DF  K +  +     LQ+WDTAGQER
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F+S+  +++R AD  +L+YDV   KSF N+  W +  +I+ +    +  P +++GNK D+
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVD--MIEDAAH--ETVPIMLVGNKADI 145

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 75/122 (61%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGKT+L++++   +FS+  + TIG +F T+ V         QIWDTAG 
Sbjct: 25  VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LV+D+   +++  +  W +E    A  +       +++GNK 
Sbjct: 85  ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT----IVVMLVGNKS 140
Query: 128 DV 129
           D+
Sbjct: 141 DL 142

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 75/122 (61%), Gaps = 4/122 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGKT+L++++   +FS+  + TIG +F T+ V         QIWDTAG 
Sbjct: 10  VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 69
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LV+D+   +++  +  W +E    A  +       +++GNK 
Sbjct: 70  ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT----IVVMLVGNKS 125
Query: 128 DV 129
           D+
Sbjct: 126 DL 127

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQ 67
           LK+++LGD   GKTSL   +  + F  QYK TIG DF  + +     L  TLQIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL-GNK 126
                +   +  GA   +LVYD+ + +SF+NL +W    +++    + +  P V L GNK
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYT--VVKKVSEESETQPLVALVGNK 124
Query: 127 IDVD 130
           ID++
Sbjct: 125 IDLE 128

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 83.2 bits (204), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 130
Query: 129 V 129
           +
Sbjct: 131 I 131

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 83.2 bits (204), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 V 129
           +
Sbjct: 126 I 126

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 83.2 bits (204), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 V 129
           +
Sbjct: 126 I 126

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 83.2 bits (204), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 118
Query: 129 V 129
           +
Sbjct: 119 I 119

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 82.8 bits (203), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 V 129
           +
Sbjct: 126 I 126

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 82.8 bits (203), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 V 129
           +
Sbjct: 126 I 126

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 70/130 (53%), Gaps = 9/130 (6%)
Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED---RLFTL 59
            RR    K+ ++GD GVGKT+ +N+ ++ +F   Y AT+GA  +   V F D    +   
Sbjct: 6   ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA--VNHPVTFLDDQGNVIKF 63
Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
            +WDTAGQE+   L   +Y GA   +L +DV S  +  NL  W +EF  QA     +  P
Sbjct: 64  NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEF--QAVVG--NEAP 119
Query: 120 FVVLGNKIDV 129
            VV  NKID+
Sbjct: 120 IVVCANKIDI 129

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++ +DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 V 129
           +
Sbjct: 126 I 126

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           ++  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 V 129
           +
Sbjct: 126 I 126

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y  T+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 V 129
           +
Sbjct: 126 I 126

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y  T+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 V 129
           +
Sbjct: 126 I 126

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 74/128 (57%), Gaps = 19/128 (14%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQI 61
            K++++GD G GKT+ + +++  +F  +Y ATIG +     F T   E++F+       +
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD-------V 65
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
           WDTAG E+F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V
Sbjct: 66  WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIV 120
Query: 122 VLGNKIDV 129
           + GNK+DV
Sbjct: 121 LCGNKVDV 128

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 74/128 (57%), Gaps = 19/128 (14%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQI 61
            K++++GD G GKT+ + +++  +F  +Y ATIG +     F T   E++F+       +
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD-------V 57
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
           WDTAG E+F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V
Sbjct: 58  WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIV 112
Query: 122 VLGNKIDV 129
           + GNK+DV
Sbjct: 113 LCGNKVDV 120

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 74/128 (57%), Gaps = 19/128 (14%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQI 61
            K++++GD G GKT+ + +++  +F  +Y ATIG +     F T   E++F+       +
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD-------V 58
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
           WDTAG E+F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V
Sbjct: 59  WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIV 113
Query: 122 VLGNKIDV 129
           + GNK+DV
Sbjct: 114 LCGNKVDV 121

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 127
Query: 129 V 129
           +
Sbjct: 128 I 128

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 V 129
           +
Sbjct: 126 I 126

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 121
Query: 129 V 129
           +
Sbjct: 122 I 122

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +   +Y AT+G +                +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 130
Query: 129 V 129
           +
Sbjct: 131 I 131

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG
Sbjct: 2   TEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAG 60
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNK 117
Query: 127 IDVDG 131
            D+ G
Sbjct: 118 CDLAG 122

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 74/128 (57%), Gaps = 6/128 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQ 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + +      LVY + +  +F++L + RE+ L      D D+ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTDDVPMILVGNKCDL 120
Query: 130 DGGNSRVV 137
           +  + RVV
Sbjct: 121 E--DERVV 126

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG
Sbjct: 2   TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAG 60
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNK 117
Query: 127 IDV 129
            D+
Sbjct: 118 CDL 120

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG
Sbjct: 2   TEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAG 60
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNK 117
Query: 127 IDV 129
            D+
Sbjct: 118 CDL 120

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG
Sbjct: 2   TEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAG 60
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNK 117
Query: 127 IDV 129
            D+
Sbjct: 118 CDL 120

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 74/128 (57%), Gaps = 6/128 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 7   KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQ 65
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + +      LVY + +  +F++L + RE+ L      D D+ P +++GNK D+
Sbjct: 66  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTDDVPMILVGNKCDL 122
Query: 130 DGGNSRVV 137
           +  + RVV
Sbjct: 123 E--DERVV 128

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V  + ++  L +WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQ 67
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNK 126
           E +  L    YRGAD  VL + + S  S++N L  W  E L + +P    N P V++G K
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPE-LRRFAP----NVPIVLVGTK 122
Query: 127 IDV 129
           +D+
Sbjct: 123 LDL 125

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 75/128 (58%), Gaps = 6/128 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F ++Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTI-EDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + +      LVY + +  +F++L + RE+ L      D ++ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 120
Query: 130 DGGNSRVV 137
           +  + RVV
Sbjct: 121 E--DERVV 126

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 71/123 (57%), Gaps = 4/123 (3%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG
Sbjct: 3   TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAG 61
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   + R  +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK
Sbjct: 62  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNK 118
Query: 127 IDV 129
            D+
Sbjct: 119 CDL 121

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 15/148 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +KV+++GD G GKTSL+  + +  F   Y  T+   ++   +Q + +   L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQD 93
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNF----PFVVL 123
            +  L   FY  A   +L +DV S  SFDN+ N W  E          ++F    P +V+
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV---------NHFCKKVPIIVV 144
Query: 124 GNKIDVDGGNSRVVCFGEEGSSMVCLQR 151
           G K D+    S V      G   V   R
Sbjct: 145 GCKTDLRKDKSLVNKLRRNGLEPVTYHR 172

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 71/123 (57%), Gaps = 4/123 (3%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG
Sbjct: 3   TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAG 61
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   + R  +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK
Sbjct: 62  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNK 118
Query: 127 IDV 129
            D+
Sbjct: 119 SDL 121

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 74/128 (57%), Gaps = 6/128 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + +      LVY + +  +F++L + RE+ L      D ++ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 120
Query: 130 DGGNSRVV 137
           +  + RVV
Sbjct: 121 E--DERVV 126

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 4/124 (3%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG
Sbjct: 13  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAG 71
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+++GNK
Sbjct: 72  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 128
Query: 127 IDVD 130
            D++
Sbjct: 129 SDLE 132

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 4/124 (3%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG
Sbjct: 17  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAG 75
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+++GNK
Sbjct: 76  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 132
Query: 127 IDVD 130
            D++
Sbjct: 133 SDLE 136

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 4/124 (3%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAG 61
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+++GNK
Sbjct: 62  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 118
Query: 127 IDVD 130
            D++
Sbjct: 119 SDLE 122

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 4/124 (3%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG
Sbjct: 5   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAG 63
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+++GNK
Sbjct: 64  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 120
Query: 127 IDVD 130
            D++
Sbjct: 121 SDLE 124

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 43/162 (26%)
Query: 4   RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQ------------ 51
            +++  K ++LG+S VGK+S++ +     F      TIGA F T  V             
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62
Query: 52  -----------------------FEDRLFTLQ--IWDTAGQERFQSLGVAFYRGADCCVL 86
                                  + + L  ++  IWDTAGQER+ S+   +YRGA C ++
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122
Query: 87  VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           V+D+++  + D    W  +  I +      N+  +++ NKID
Sbjct: 123 VFDISNSNTLDRAKTWVNQLKISS------NYIIILVANKID 158

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            +K + +GD  VGKT ++  Y    F   Y  T+  +F +  V  +     L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNK 126
           E +  L    YRGAD  +L + + S  S++N++  W  E L   +P      P V++G K
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPE-LKHYAP----GIPIVLVGTK 119
Query: 127 IDV----------DGGNSRVVCFGEEGSSMVCLQR 151
           +D+           G  S     GEE   M+   R
Sbjct: 120 LDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVR 154

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV+ILG   VGKTSL +Q+V  +FS  Y  T+   + +K V      F L + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           +  L  +F  G    VLVY V S+ SF  + +  ++             P V++GNK D+
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKL---HEGHGKTRVPVVLVGNKADL 141
Query: 130 D 130
Sbjct: 142 S 142

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG
Sbjct: 6   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAG 64
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
            E + ++   ++R  +  +LV+ +   +SF     +RE+ L     ++ D  P +V+GNK
Sbjct: 65  LEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQIL--RVKAEEDKIPLLVVGNK 122
Query: 127 IDVD 130
            D++
Sbjct: 123 SDLE 126

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG
Sbjct: 2   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAG 60
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
            E + ++   ++R  +  +LV+ +   +SF     +RE+ L     ++ D  P +V+GNK
Sbjct: 61  LEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQIL--RVKAEEDKIPLLVVGNK 118
Query: 127 IDVD 130
            D++
Sbjct: 119 SDLE 122

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            +K + +GD  VGKT L+  Y +  F   Y  T+  +F +  V        L +WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQ 66
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNK 126
           E +  L    YRGAD  +L + + S  S++N++  W  E L   +P      P V++G K
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP----GVPIVLVGTK 121
Query: 127 IDV 129
           +D+
Sbjct: 122 LDL 124

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG
Sbjct: 5   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAG 63
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
            E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+++GNK
Sbjct: 64  LEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 120
Query: 127 IDVD 130
            D++
Sbjct: 121 SDLE 124

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           +LK +++GD  VGKT L+  Y N  F  +Y  T+  D     V    + + L ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E +  L    Y   D  ++ + V +  SF N+   +EE++ +     P N PF+++G +I
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNV---KEEWVPELKEYAP-NVPFLLIGTQI 132
Query: 128 DV 129
           D+
Sbjct: 133 DL 134

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V  +     L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQ 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNK 126
           E +  L    YRGAD  +L + + S  S++N+   W  E    A        P +++G K
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-----GVPIILVGTK 119
Query: 127 IDV 129
           +D+
Sbjct: 120 LDL 122

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 6   RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
           +  LK++++GD  VGKT L+  +   +    Y  T+  +F +  +++++  F L +WDTA
Sbjct: 21  KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTA 79
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEF 106
           GQE +  L    Y  +D  +L + VN+  SFDN++  W  E 
Sbjct: 80  GQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI 121

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 7/125 (5%)
Query: 6   RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
           +  LK++++GD  VGKT L+  +   +    Y  T+  +F +  +++++  F L +WDTA
Sbjct: 20  KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTA 78
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLG 124
           GQE +  L    Y  +D  +L + VN+  SFDN++  W  E          D    V++G
Sbjct: 79  GQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-----KHYIDTAKTVLVG 133
Query: 125 NKIDV 129
            K+D+
Sbjct: 134 LKVDL 138

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q++   F   Y  TI  D  TK+   +DR   L I DTAGQE F ++   + R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTI-EDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG 140
            +  +LV+ V    SF+ +  ++ + L      D D FP +++GNK D+D  + R V   
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQIL---RVKDRDEFPMILIGNKADLD--HQRQVT-Q 130
Query: 141 EEGSSMV 147
           EEG  + 
Sbjct: 131 EEGQQLA 137

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV 129
           D+
Sbjct: 118 DL 119

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 119
Query: 128 DV 129
           D+
Sbjct: 120 DL 121

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
           S+    +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +W
Sbjct: 2   SKLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLW 60
Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFV 121
           DTAGQE +  L    Y   D  ++ + + S  SF+N+   W  E           N P +
Sbjct: 61  DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPII 115
Query: 122 VLGNKIDV 129
           ++G K+D+
Sbjct: 116 LVGTKLDL 123

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 121
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 122 LRDDPSTI 129

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 119 LRDDPSTI 126

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 120
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 121 LRDDPSTI 128

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 119
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 120 LRDDPSTI 127

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VXIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 119 LRDDPSTI 126

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 128
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 129 LRDDPSTI 136

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 119 LRDDPSTI 126

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 119 LRDDPSTI 126

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 119 LRDDPSTI 126

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV 129
           D+
Sbjct: 118 DL 119

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 119 LRDDPSTI 126

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 121
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 122 LRDDPSTI 129

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 119 LRDDPSTI 126

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 119 LRDDPSTI 126

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 125
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 126 LRDDPSTI 133

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 122
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 123 LRDDPSTI 130

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 120
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 121 LRDDPSTI 128

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 119 LRDDPSTI 126

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    FS +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 127
Query: 128 DV 129
           D+
Sbjct: 128 DL 129

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV 129
           D+
Sbjct: 118 DL 119

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +  +  L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV 129
           D+
Sbjct: 118 DL 119

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 10  KVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQFEDRLFTLQIW--DTA 65
           KV ++G++ VGK++L++ + +K  KF   Y  T G + +   V   D   +++++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN 125
           G + ++     ++ G    +LV+DV+SM+SF++   W  E L  A P        V++ N
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF-ELLKSARPDRERPLRAVLVAN 140
Query: 126 KIDVDGGNSRV 136
           K D+     +V
Sbjct: 141 KTDLPPQRHQV 151

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV 129
           D+
Sbjct: 118 DL 119

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLRDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 119 LRDDPSTI 126

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 144
Query: 128 DV 129
           D+
Sbjct: 145 DL 146

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV 129
           D+
Sbjct: 118 DL 119

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV 129
           D+
Sbjct: 118 DL 119

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 23  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 82  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 127

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV 129
           D+
Sbjct: 118 DL 119

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MP  +    K+ ILG   VGK+SL  Q+V  +F + Y  TI   F TK +    + + LQ
Sbjct: 1   MPQSKSR--KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQ 57
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           + DTAGQ+ +      +    +  +LVY V S+KSF+ +     + L           P 
Sbjct: 58  LVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPI 114
Query: 121 VVLGNKIDVDGGNSRVVCFGEEGSSM 146
           +++GNK D+     RV+ + EEG ++
Sbjct: 115 MLVGNKKDLH--MERVISY-EEGKAL 137

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 81
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 136
Query: 128 DV 129
           D+
Sbjct: 137 DL 138

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 125

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 125

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MP  +    K+ ILG   VGK+SL  Q+V  +F + Y  TI   F TK +    + + LQ
Sbjct: 1   MPQSKSR--KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQ 57
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           + DTAGQ+ +      +    +  +LVY V S+KSF+ +     + L           P 
Sbjct: 58  LVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPI 114
Query: 121 VVLGNKIDVDGGNSRVVCFGEEGSSM 146
           +++GNK D+     RV+ + EEG ++
Sbjct: 115 MLVGNKKDLH--MERVISY-EEGKAL 137

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 16/143 (11%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+ I G +GVGK++L+ +++ K+F  +Y  T+ + +   +   +D + +++I DTAGQE
Sbjct: 29  VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQE 87
Query: 69  -RFQSLGVAFYRGADCCVLVYDVNSMKSFDN---LNNWREEFLIQASPSDPDNFPFVVLG 124
              Q  G    R  +  VLVYD+    SF+    L N  +E         P N   +++G
Sbjct: 88  DTIQREG--HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI------KKPKNVTLILVG 139
Query: 125 NKIDVDGGNSRVVCFGEEGSSMV 147
           NK D+D  +SR V   EEG  + 
Sbjct: 140 NKADLD--HSRQVS-TEEGEKLA 159

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 7/137 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ ILG   VGK+SL  Q+V  +F + Y  TI   F TK +    + + LQ+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           +      +    +  +LVY V S+KSF+ +     + L           P +++GNK D+
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDL 118
Query: 130 DGGNSRVVCFGEEGSSM 146
                RV+ + EEG ++
Sbjct: 119 H--MERVISY-EEGKAL 132

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y   +  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 119 LRDDPSTI 126

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   K  ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 119 LRDDPSTI 126

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQED 85
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           +  L    Y   D  ++ +   S+ S D+L N  E++  +     P N P +++GNK D+
Sbjct: 86  YDRLRPLSYPDTDVILMCF---SIDSPDSLENIPEKWTPEVKHFXP-NVPIILVGNKKDL 141

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDKYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI   +  K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGK  L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 125
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 126 LRDDPSTI 133

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQED 85
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 140
Query: 129 V 129
           +
Sbjct: 141 L 141

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 122
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 123 LRDDPSTI 130

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F  +Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVEKYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K +L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KNALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GN+ D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNRCDL 120

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRV 136
           +    S +
Sbjct: 119 LRDDPSTI 126

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 67
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 122
Query: 129 V 129
           +
Sbjct: 123 L 123

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
Query: 129 V 129
           +
Sbjct: 121 L 121

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 66
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 121
Query: 129 V 129
           +
Sbjct: 122 L 122

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 69
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 124
Query: 129 V 129
           +
Sbjct: 125 L 125

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 68
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 123
Query: 129 V 129
           +
Sbjct: 124 L 124

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  +I  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 22  KSALTIQLIQNHFVDEYDPSI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 81  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 126

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 67
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 122
Query: 129 V 129
           +
Sbjct: 123 L 123

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 67
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 122
Query: 129 V 129
           +
Sbjct: 123 L 123

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +PS      K++++GD GVGK++L  Q+  K F  +Y  TI   +L K  + +++   L 
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYL-KHTEIDNQWAILD 69
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           + DTAGQE F ++   + R  D  ++VY V    SF++++ + +  L      D ++FP 
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPM 126
Query: 121 VVLGNKIDV 129
           +++ NK+D+
Sbjct: 127 ILVANKVDL 135

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           + P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----HTPILLVGTKL 117
Query: 128 DV 129
           D+
Sbjct: 118 DL 119

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +PS      K++++GD GVGK++L  Q+  K F + Y  TI   +L K  + +++   L 
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYL-KHTEIDNQWAILD 69
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           + DTAGQE F ++   + R  D  ++VY V    SF++++ + +  L      D ++FP 
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPM 126
Query: 121 VVLGNKIDV 129
           +++ NK+D+
Sbjct: 127 ILVANKVDL 135

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y       +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 144
Query: 128 DV 129
           D+
Sbjct: 145 DL 146

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGK  L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 124
Query: 128 DV 129
           D+
Sbjct: 125 DL 126

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           + P +++G K+
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----HTPILLVGTKL 118
Query: 128 DV 129
           D+
Sbjct: 119 DL 120

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           + P +++G K+
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----HTPILLVGTKL 118
Query: 128 DV 129
           D+
Sbjct: 119 DL 120

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  +I  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPSI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 66
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 121
Query: 129 V 129
           +
Sbjct: 122 L 122

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV 129
           D+
Sbjct: 118 DL 119

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  S++N+   W  E +    PS     P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE-VRHHCPST----PIILVGTKL 117
Query: 128 DV 129
           D+
Sbjct: 118 DL 119

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV 129
           D+
Sbjct: 118 DL 119

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DT GQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK D+
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKSDL 121

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK D+
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKSDL 121

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG+E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DT GQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +PS      K++++GD GVGK++L  Q+  K F ++Y  TI  D   K  + +++   L 
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTI-EDSYRKHTEIDNQWAILD 69
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           + DTAGQE F ++   + R  D  ++VY V    SF++++ + +  L      D ++FP 
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPM 126
Query: 121 VVLGNKIDV 129
           +++ NK+D+
Sbjct: 127 ILVANKVDL 135

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F +++  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEFDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 120
Query: 128 DV 129
           D+
Sbjct: 121 DL 122

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE   ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF ++N +RE+        D D+ P V++GNK D+
Sbjct: 93  GEGFLCVFAINNSKSFADINLYREQI---KRVKDSDDVPMVLVGNKCDL 138

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 89
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 144
Query: 128 DV 129
           D+
Sbjct: 145 DL 146

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTA QE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKXDL 120

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 68
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  S++N+   W  E +    PS     P +++G K+
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE-VRHHCPST----PIILVGTKL 123
Query: 128 DV 129
           D+
Sbjct: 124 DL 125

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTA QE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKXDL 120

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 69
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  S++N+   W  E +    PS     P +++G K+
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE-VRHHCPST----PIILVGTKL 124
Query: 128 DV 129
           D+
Sbjct: 125 DL 126

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQED 65
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
Query: 129 V 129
           +
Sbjct: 121 L 121

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +PS      K++++GD GVGK++L  Q+  K F   Y  TI   +L K  + +++   L 
Sbjct: 6   VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDNQWAILD 64
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           + DTAGQE F ++   + R  D  ++VY V    SF++++ + +  L      D ++FP 
Sbjct: 65  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPM 121
Query: 121 VVLGNKIDV 129
           +++ NK+D+
Sbjct: 122 ILVANKVDL 130

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 125

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK D+
Sbjct: 93  GEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKCDL 138

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
Query: 129 V 129
           +
Sbjct: 121 L 121

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 118
Query: 129 V 129
           +
Sbjct: 119 L 119

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
Query: 129 V 129
           +
Sbjct: 121 L 121

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 118
Query: 129 V 129
           +
Sbjct: 119 L 119

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
Query: 129 V 129
           +
Sbjct: 121 L 121

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 6   RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
           + L+K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTA
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTA 211
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLG 124
           G E +  L    Y   D  ++ + + S  SF ++   W  E           N P +++G
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVG 266
Query: 125 NKIDV 129
            K+D+
Sbjct: 267 TKLDL 271

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 6   RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
           + L+K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTA
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTA 211
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLG 124
           G E +  L    Y   D  ++ + + S  SF ++   W  E           N P +++G
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVG 266
Query: 125 NKIDV 129
            K+D+
Sbjct: 267 TKLDL 271

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 6   RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
           + L+K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTA
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTA 211
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLG 124
           G E +  L    Y   D  ++ + + S  SF ++   W  E           N P +++G
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVG 266
Query: 125 NKIDV 129
            K+D+
Sbjct: 267 TKLDL 271

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 85
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           +  L    Y   D  ++ + V+S    D+L N  E+++ +     P N P +++ NK D+
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSP---DSLENIPEKWVPEVKHFCP-NVPIILVANKKDL 141

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKTSL+  Y    +  +Y  T   D  +  V  + R   LQ+ DTAGQ+
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQD 79
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKI 127
            F  L    Y   D  +L + V S  SF N++  W  E       +     P +++G + 
Sbjct: 80  EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA-----PIILVGTQS 134
Query: 128 DV 129
           D+
Sbjct: 135 DL 136

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 7/137 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ ILG   VGK+SL  Q+V  +F +    TI   F TK +    + + LQ+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           +      +    +  +LVY V S+KSF+ +     + L           P +++GNK D+
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDL 121
Query: 130 DGGNSRVVCFGEEGSSM 146
                RV+ + EEG ++
Sbjct: 122 H--MERVISY-EEGKAL 135

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +       Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
Query: 129 V 129
           +
Sbjct: 121 L 121

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++   TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDECDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKSDL 120

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVQFED---RLFTLQIWDT 64
           K+ I+G++G GKT+L+ Q    K S+     AT+G D     +Q  D   R   L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKS-FDNLNNWREEFLIQASPSDPDNFPFVVL 123
           AG+E F S    F       + VYD++  ++  D    W      +AS S     P +++
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-----PVILV 116
Query: 124 GNKIDVDGGNSRVVC 138
           G  +DV     R  C
Sbjct: 117 GTHLDVSDEKQRKAC 131

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V + G  GVGK+SL+ ++V   F   Y  T+  D   + +  +  + TLQI DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV-EDTYRQVISCDKSICTLQITDTTGSHQ 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           F ++           +LVY + S +S + L    E+  I     D ++ P +++GNK D
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQ--ICEIKGDVESIPIMLVGNKCD 120

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVQFED---RLFTLQIWDT 64
           K+ I+G++G GKT+L+ Q    K S+     AT+G D     +Q  D   R   L +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKS-FDNLNNWREEFLIQASPSDPDNFPFVVL 123
           AG+E F S    F       + VYD++  ++  D    W      +AS S     P +++
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-----PVILV 118
Query: 124 GNKIDVDGGNSRVVC 138
           G  +DV     R  C
Sbjct: 119 GTHLDVSDEKQRKAC 133

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+F S+   + + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
               +LVY + + +SF ++   R++ +        +  P +++GNK+D+
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQII---RVKRYEKVPVILVGNKVDL 120

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGLED 68
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 123
Query: 129 V 129
           +
Sbjct: 124 L 124

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 26/141 (18%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 69  RF---------QSLGVAF-----YRG-----ADCCVLVYDVNSMKSFDNLN-NWREEFLI 108
            +         Q++G  +      RG     AD  ++ + + S  SF+N+   W  E   
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 109 QASPSDPDNFPFVVLGNKIDV 129
                   N P +++G K+D+
Sbjct: 125 HCP-----NTPIILVGTKLDL 140

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +V+ + R   L +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVA-DVEVDGRRVELALWDTAGQED 70
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y  ++  ++ + ++   S +N+   W  E L           P +++G K+D
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQ-----GVPIILVGCKVD 125
Query: 129 VDGGNSRVVCFGEEGSSMVCLQRKYSL 155
           +      +    +EG   V  Q   S+
Sbjct: 126 LRNDPQTIEQLRQEGQQPVTSQEGQSV 152

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q++   F + Y  TI  D  TK    +     L I DTAGQE F ++   + R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131
               +LV+ +N  +SF+ +     + L      D D+FP V++GNK D++ 
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQIL---RVKDRDDFPVVLVGNKADLES 128

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L +WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 88
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEF 106
           + ++    Y  +D  ++ +D++  ++ D+ L  W+ E 
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 126

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
           S +    K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L +W
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLW 60
Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEF 106
           DT+G   + ++    Y  +D  ++ +D++  ++ D+ L  W+ E 
Sbjct: 61  DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 105

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L +WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 83
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEF 106
           + ++    Y  +D  ++ +D++  ++ D+ L  W+ E 
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 121

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 71
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFL 107
           + ++    Y  +D  +L +D++  ++ D+ L  WR E L
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL 110

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 70
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFL 107
           + ++    Y  +D  +L +D++  ++ D+ L  WR E L
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL 109

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFL 107
           + ++    Y  +D  +L +D++  ++ D+ L  WR E L
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL 126

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L +V++LGD GVGKTSL + +  K+  + ++  +G D   + +  +    TL + DT  
Sbjct: 3   ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 67  QERFQS--LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
            E+        +  +G    V+VY +    SF++ +  R +          D+ P +++G
Sbjct: 62  AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQL---RRTHQADHVPIILVG 118
Query: 125 NKIDV 129
           NK D+
Sbjct: 119 NKADL 123

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +P   +  +++ ++G    GKT+ +N   + +FS     T+G  F  ++V   +   T++
Sbjct: 15  VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGN--VTIK 70
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWD  GQ RF+S+   + RG +  V + D    +  +   N     L           P 
Sbjct: 71  IWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLL---DKPQLQGIPV 127
Query: 121 VVLGNKIDV 129
           +VLGNK D+
Sbjct: 128 LVLGNKRDL 136

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 7/132 (5%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +P   +  +++ ++G    GKT+ +N   + +F+     T+G  F  +++   +   T++
Sbjct: 15  VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIK 70
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           +WD  GQ RF+S+   + RG    V + D    +  +   N     L           P 
Sbjct: 71  LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLL---DKPQLQGIPV 127
Query: 121 VVLGNKIDVDGG 132
           +VLGNK D+ G 
Sbjct: 128 LVLGNKRDLPGA 139

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ ++G    GKT+ +N   + +F+     T+G  F  +++   +   T+++WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 87
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+S+   + RG    V + D    +  +   N     L           P +VLGNK D
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLL---DKPQLQGIPVLVLGNKRD 144
Query: 129 VDGG 132
           + G 
Sbjct: 145 LPGA 148

>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation Protein Hydf Length = 423

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 23/131 (17%)
Query: 11  VIILGDSGVGKTSLMNQYVNKKFS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ G   VGK+S MN  V +  S  + Y  T   D + K ++    +  + + DT G +
Sbjct: 37  IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTT-TDPVYKSMELHP-IGPVTLVDTPGLD 94
Query: 69  RFQSLG--------VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
               LG          FYR ADC +LV D       D++ N  +E  I          PF
Sbjct: 95  DVGELGRLRVEKARRVFYR-ADCGILVTDSAPTPYEDDVVNLFKEMEI----------PF 143
Query: 121 VVLGNKIDVDG 131
           VV+ NKIDV G
Sbjct: 144 VVVVNKIDVLG 154

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 4   RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVQFEDRLFTLQIW 62
           + +T L+V++ G    GKT+++NQ    + S+++  AT+G +  T    FE       ++
Sbjct: 13  QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET----FEKGRVAFTVF 68
Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPD------ 116
           D  G ++F+ L   +Y   D  + V D     S D+L     +  IQA     D      
Sbjct: 69  DMGGAKKFRGLWETYYDNIDAVIFVVD-----SSDHLRLCVVKSEIQAMLKHEDIRRELP 123
Query: 117 ---NFPFVVLGNKIDVDGGNS 134
                PF+   NK+D  G  +
Sbjct: 124 GGGRVPFLFFANKMDAAGAKT 144

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G  G GKT+++ +    K            F  + VQ+++  FT  +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVETVQYKNISFT--VWDVGGQD 55
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R +SL   +YR  +  + V D N           RE      +  +  N  ++V  NK D
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEA---REVMQRMLNEDELRNAAWLVFANKQD 112
Query: 129 V 129
           +
Sbjct: 113 L 113

>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV I+G+   GK++L+++Y+   +  Q ++  G  F  KE+  + + + L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYV-QEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             Q     F    D  V V+ +    SF  + N+   FL   S  +    P V++G +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNY---FLRLCSFRNASEVPMVLVGTQDA 130
Query: 129 VDGGNSRVV 137
           +   N RV+
Sbjct: 131 ISAANPRVI 139

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G  G GKT+++ +    K            F  + VQ+++  FT  +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVETVQYKNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R +SL   +YR  +  + V D N           RE      +  +  N  ++V  NK D
Sbjct: 73  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEA---REVMQRMLNEDELRNAAWLVFANKQD 129
Query: 129 V 129
           +
Sbjct: 130 L 130

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G  G GKT+++ +    K            F  + VQ+++  FT  +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVETVQYKNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R +SL   +YR  +  + V D N           RE      +  +  N  ++V  NK D
Sbjct: 73  RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEA---REVMQRMLNEDELRNAVWLVFANKQD 129
Query: 129 V 129
           +
Sbjct: 130 L 130

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKTS++ +    +       TIG  F  + V++++  FT  +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEIVTTI-PTIG--FNVETVEYKNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + + L   +Y+     + V D N     D +   REE +   +  +  N   +V  NK D
Sbjct: 73  KIRPLWRHYYQNTQAIIFVVDSNDR---DRIGEAREELMKMLNEDEMRNAILLVFANKHD 129
Query: 129 V 129
           +
Sbjct: 130 L 130

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV++LG+SGVGK++L   +   +  N ++     D   + +  +    TL ++D   Q
Sbjct: 12  VFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 71
Query: 68  ERFQS-LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN-FPFVVLGN 125
                 L     +  D  ++V+ V   +SF  +     E L++     P +  P +++GN
Sbjct: 72  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV----PETLLRLRAGRPHHDLPVILVGN 127
Query: 126 KIDVDGGNSRVVCFGEEGSSMV 147
           K D+    SR V   EEG  + 
Sbjct: 128 KSDL--ARSREVSL-EEGRHLA 146

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++++LG    GKT+L+ Q  ++  S+    T    F  K VQ +   F L +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 71
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFD 97
           + +    +++   D  + V D    K F+
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRKRFE 100

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++++LG    GKT+L+ Q  ++  S+    T    F  K VQ +   F L +WD  GQ 
Sbjct: 18  VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFD 97
           + +    +++   D  + V D    K F+
Sbjct: 73  KIRPYWRSYFENTDILIYVIDSADRKRFE 101

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K+SL+ ++V   F + Y  TI  D   + +  +  + TLQI DT G  +F ++       
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTI-EDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
               +LV+ V S +S + L     + ++Q   S  D  P +++GNK D
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIY-KLIVQIKGSVED-IPVMLVGNKCD 125

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVII+G    GKT+++ Q++  +  +    TIG++   +E+  ++  F +  WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMNEVVHT-SPTIGSN--VEEIVVKNTHFLM--WDIGGQES 72
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
            +S    +Y   +  +LV D     S D   L   +EE     +  D      ++  NK 
Sbjct: 73  LRSSWNTYYSNTEFIILVVD-----SIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQ 127
Query: 128 DVDG 131
           D+ G
Sbjct: 128 DMKG 131

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 9  LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
          +++++LG    GKT+L+ Q  ++  S+    T    F  K VQ +   F L +WD  GQ 
Sbjct: 5  VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 59
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFD 97
          + +    +++   D  + V D    K F+
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRFE 88

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++ N +  +    T+G +  T     E R F L IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +S    ++   D  + V D    +   +     +  L++   +       ++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 130
Query: 129 VDGGNS 134
           + G  S
Sbjct: 131 LPGALS 136

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++ N +  +    T+G +  T     E R F L IWD  GQ+
Sbjct: 17  LRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLGFNIKT----LEHRGFKLNIWDVGGQK 71
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +S    ++   D  + V D    +   +     +  L++   +       ++  NK D
Sbjct: 72  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 128
Query: 129 VDGGNS 134
           + G  S
Sbjct: 129 LPGALS 134

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++ N +  +    T+G +  T     E R F L IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +S    ++   D  + V D    +   +     +  L++   +       ++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 130
Query: 129 VDGGNS 134
           + G  S
Sbjct: 131 LPGALS 136

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    K            F  + V+F +  FT  +WD  GQ+
Sbjct: 18  VRILMVGLDAAGKTTILYKV---KLGEVVTTIPTIGFNVETVEFRNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + + L   +Y   D  + V D N  +  D+    REE     +  +  +   +V  NK D
Sbjct: 73  KIRPLWRHYYSNTDGLIFVVDSNDRERIDDA---REELHRMINEEELKDAIILVFANKQD 129
Query: 129 VDGGNS 134
           +    S
Sbjct: 130 LPNAMS 135

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 19/147 (12%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTL---QIW-- 62
           + KV+++G+SGVGK++L   +   +  + ++     D   + +  +    TL    IW  
Sbjct: 23  IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82
Query: 63  -DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN-FPF 120
            D  G  R   L     +  D  ++V+ V   +SF  +     E L++     P +  P 
Sbjct: 83  GDAGGWLRDHCL-----QTGDAFLIVFSVTDRRSFSKV----PETLLRLRAGRPHHDLPV 133
Query: 121 VVLGNKIDVDGGNSRVVCFGEEGSSMV 147
           +++GNK D+    SR V   EEG  + 
Sbjct: 134 ILVGNKSDL--ARSREVSL-EEGRHLA 157

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 68/127 (53%), Gaps = 15/127 (11%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ- 67
           + + ILG  G GK++L  +++ K+F ++Y   +  D  + E   + +   L++ DTA   
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNL-EDTYSSEETVDHQPVHLRVMDTADLD 80
Query: 68  -----ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
                ER+ +   AF       ++VY V+S +SFD+ +++ E   + A  +   + P ++
Sbjct: 81  TPRNCERYLNWAHAF-------LVVYSVDSRQSFDSSSSYLELLALHAKETQ-RSIPALL 132
Query: 123 LGNKIDV 129
           LGNK+D+
Sbjct: 133 LGNKLDM 139

>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco) Length = 535

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE------VQFEDRL--FTLQ 60
           +KV ++GD   GKTSL+ Q + + F  +   T G + +TK+      ++ +D L      
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
            WD  GQE   +    F   +   +L+ D    ++  N + W          S     P 
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLD---SRTDSNKHYWLRHIEKYGGKS-----PV 153
Query: 121 VVLGNKID 128
           +V+ NKID
Sbjct: 154 IVVMNKID 161

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVII+G    GKT+++ Q+   +  +    TIG++   +E+   +  F +  WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 72
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK DV
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVII+G    GKT+++ Q+   +  +    TIG++   +E+   +  F +  WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 72
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK DV
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVII+G    GKT+++ Q+   +  +    TIG++   +E+   +  F +  WD  GQE 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNV--EEIVINNTRFLM--WDIGGQES 77
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK DV
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVII+G    GKT+++ Q+   +  +    TIG++   +E+   +  F +  WD  GQE 
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNV--EEIVINNTRFLM--WDIGGQES 78
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK DV
Sbjct: 79  LRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQDV 135

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGK++L   +   +  + ++     D   + +  +    TL ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 68  ERFQS-LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN-FPFVVLGN 125
                 L     +  D  ++V+ V   +SF  +     E L++     P +  P +++GN
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV----PETLLRLRAGRPHHDLPVILVGN 117
Query: 126 KIDVDGGNSRVVCFGEEGSSMV 147
           K D+    SR V   EEG  + 
Sbjct: 118 KSDL--ARSREVSL-EEGRHLA 136

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-84
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-83
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	3e-83
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	2e-68
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-64
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	3e-62
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-60
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	5e-60
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	5e-59
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-57
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-55
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	8e-53
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-52
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	3e-52
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	5e-52
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	6e-52
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	7e-52
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	3e-51
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	5e-51
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	7e-51
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	9e-51
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-50
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-50
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	2e-50
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	4e-50
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	4e-50
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	6e-50
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	7e-50
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	7e-50
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	8e-50
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-49
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-49
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	2e-49
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-49
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-49
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	3e-49
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	4e-49
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	5e-49
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	5e-49
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	6e-49
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	9e-49
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-48
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	2e-48
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	7e-48
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-47
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-47
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	4e-47
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	8e-47
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	1e-46
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-46
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	3e-46
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-45
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	4e-45
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	5e-45
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-44
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-44
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	1e-44
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-44
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-44
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	5e-44
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-43
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-42
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	3e-42
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	6e-42
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-41
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-41
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-41
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-37
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-37
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	5e-37
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	9e-33
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-29
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	4e-29
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	5e-29
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-28
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-28
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	4e-28
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-27
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-27
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-27
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	3e-27
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	4e-27
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	6e-27
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	5e-24
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	4e-16
3llu_A	196	RAS-related GTP-binding protein C; structural geno	8e-15
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	9e-14
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-13
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	8e-13
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	8e-13
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-12
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	7e-12
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	8e-12
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	9e-12
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-11
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	3e-11
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-10
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	2e-10
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-10
1nrj_B	218	SR-beta, signal recognition particle receptor beta	3e-10
2fh5_B	214	SR-beta, signal recognition particle receptor beta	9e-10
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	1e-09
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	2e-09
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	3e-09
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	9e-09
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	1e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-05
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	3e-04

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  246 bits (630), Expect = 1e-84
 Identities = 108/137 (78%), Positives = 122/137 (89%), Gaps = 2/137 (1%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVV 137
           VVLGNKID++  N +V 
Sbjct: 121 VVLGNKIDLE--NRQVA 135

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  242 bits (621), Expect = 1e-83
 Identities = 71/135 (52%), Positives = 98/135 (72%), Gaps = 3/135 (2%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
           + + +L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIW
Sbjct: 2   AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 61

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           DTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+
Sbjct: 62  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 121

Query: 123 LGNKIDVDGGNSRVV 137
           LGNKID+     R V
Sbjct: 122 LGNKIDIS---ERQV 133

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  241 bits (618), Expect = 3e-83
 Identities = 93/138 (67%), Positives = 117/138 (84%), Gaps = 2/138 (1%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTL 59
           M SR++ +LKVIILGDSGVGKTSLM++YVN K+S QYKATIGADFLTKEV  + D++ T+
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60

Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
           Q+WDTAGQERFQSLGVAFYRGADCCVLVYDV +  SF+N+ +WR+EFL+ A+ + P+ FP
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120

Query: 120 FVVLGNKIDVDGGNSRVV 137
           FV+LGNKID +    ++V
Sbjct: 121 FVILGNKIDAEESK-KIV 137

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  203 bits (520), Expect = 2e-68
 Identities = 48/136 (35%), Positives = 81/136 (59%), Gaps = 8/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            +K++++G+  VGK+S++ +Y    F+  YK TIG DFL +++Q  D    L +WDTAGQ
Sbjct: 5   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E F ++  A+YRGA  CVLV+     +SF+ +++WRE+ + +       + P  ++ NKI
Sbjct: 65  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-----GDIPTALVQNKI 119

Query: 128 DVDGGNSRVVCFGEEG 143
           D+   +   +   EE 
Sbjct: 120 DLL--DDSCIKN-EEA 132

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  194 bits (496), Expect = 2e-64
 Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 5/133 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQFEDRLFTLQIW--D 63
             KV ++G++ VGK++L++ + +K  KF   Y  T G + +   V   D   +++++  D
Sbjct: 20  RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLD 79

Query: 64  TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL 123
           TAG + ++     ++ G    +LV+DV+SM+SF++   W E  L  A P        V++
Sbjct: 80  TAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFEL-LKSARPDRERPLRAVLV 138

Query: 124 GNKIDVDGGNSRV 136
            NK D+     +V
Sbjct: 139 ANKTDLPPQRHQV 151

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  189 bits (483), Expect = 3e-62
 Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 7/130 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQ
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E+F  L   +Y  A C ++++DV S  ++ N+ NW  + +        +N P V+ GNK+
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKV 129

Query: 128 DVDGGNSRVV 137
           D+   + +V 
Sbjct: 130 DIK--DRKVK 137

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  183 bits (468), Expect = 2e-60
 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 10/135 (7%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
             +   LKV I+G+   GK++L+++Y+   +  +  +  G  F  KE+  + + + L I 
Sbjct: 15  YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRF-KKEIVVDGQSYLLLIR 72

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           D  G    Q     F    D  V V+ +    SF  + N+        S  +    P V+
Sbjct: 73  DEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLC---SFRNASEVPMVL 124

Query: 123 LGNKIDVDGGNSRVV 137
           +G +  +   N RV+
Sbjct: 125 VGTQDAISAANPRVI 139

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  182 bits (465), Expect = 5e-60
 Identities = 25/135 (18%), Positives = 55/135 (40%), Gaps = 8/135 (5%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
            R    L++ +LGD+  GK+SL+++++   +    + T   +   KE+  + +   + I 
Sbjct: 2   MRSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTES-EQYKKEMLVDGQTHLVLIR 59

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           + AG    +     F   AD  + V+ +    SF  ++    +                +
Sbjct: 60  EEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLS-SLRGEGRGGLALAL 113

Query: 123 LGNKIDVDGGNSRVV 137
           +G +  +   + RVV
Sbjct: 114 VGTQDRISASSPRVV 128

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  180 bits (459), Expect = 5e-59
 Identities = 49/138 (35%), Positives = 73/138 (52%), Gaps = 7/138 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAG 66
            LK+++LGD   GKTSL   +  + F  QYK TIG DF  + +     L  TLQIWD  G
Sbjct: 6   QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL-GN 125
           Q     +   +  GA   +LVYD+ + +SF+NL +W     ++    + +  P V L GN
Sbjct: 66  QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTV--VKKVSEESETQPLVALVGN 123

Query: 126 KIDVDGGNSRVVCFGEEG 143
           KID++  + R +   E+ 
Sbjct: 124 KIDLE--HMRTIKP-EKH 138

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  177 bits (451), Expect = 2e-57
 Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 7/131 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA-DFLTKEVQFEDRLFTLQIWDTAG 66
             K+ ++GD GVGKT+ +N+ ++ +F   Y AT+GA +     +  +  +    +WDTAG
Sbjct: 11  TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE+   L   +Y GA   +L +DV S  +  NL  W +EF            P VV  NK
Sbjct: 71  QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANK 126

Query: 127 IDVDGGNSRVV 137
           ID+   N + +
Sbjct: 127 IDIK--NRQKI 135

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  171 bits (436), Expect = 1e-55
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 11/141 (7%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVQFED---RLFTLQIWD 63
           +K++I+G++G GKT+L+ Q +  K S+     AT+G D     +Q  D   R   L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 64  TAGQERFQSLGVAFYRGADCCVLVYDVNSMKS-FDNLNNWREEFLIQASPSDPDNFPFVV 122
            AG+E F S    F       + VYD++  ++  D +  W      +A      + P ++
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-----SSSPVIL 117

Query: 123 LGNKIDVDGGNSRVVCFGEEG 143
           +G  +DV     R  C  +  
Sbjct: 118 VGTHLDVSDEKQRKACMSKIT 138

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  164 bits (418), Expect = 8e-53
 Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 7/138 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ +   D     +IWDTAGQ
Sbjct: 12  NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 71

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER+ SL   +YRGA   ++V+DV +  SF+    W +E   Q +P    N    + GNK 
Sbjct: 72  ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNKS 127

Query: 128 DVDGGNSRVVCFGEEGSS 145
           D+   ++R V   E+  +
Sbjct: 128 DLL--DARKVTA-EDAQT 142

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  163 bits (414), Expect = 2e-52
 Identities = 52/136 (38%), Positives = 78/136 (57%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             KV++LG+  VGKTSL+ +Y   KF++++  T+GA FLTK++    +   L IWDTAGQ
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF +LG  +YR ++  +LVYD+    SF  + NW +E                ++GNKI
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKI 121

Query: 128 DVDGGNSRVVCFGEEG 143
           D++    R V   +E 
Sbjct: 122 DLE--KERHVSI-QEA 134

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  162 bits (413), Expect = 3e-52
 Identities = 58/136 (42%), Positives = 83/136 (61%), Gaps = 7/136 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           + SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D+
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADL 123

Query: 130 DGGNSRVVCFGEEGSS 145
              N R V F +E  S
Sbjct: 124 A--NKRAVDF-QEAQS 136

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  162 bits (413), Expect = 5e-52
 Identities = 52/134 (38%), Positives = 72/134 (53%), Gaps = 7/134 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV +LGD+GVGK+S++ ++V   F +    TIGA F+TK V   + L    IWDTAGQER
Sbjct: 25  KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F SL   +YRG+   V+VYD+    SF  L  W +E           N    + GNK D+
Sbjct: 85  FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE----NIVMAIAGNKCDL 140

Query: 130 DGGNSRVVCFGEEG 143
              + R V   ++ 
Sbjct: 141 S--DIREVPL-KDA 151

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  161 bits (411), Expect = 6e-52
 Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 7/135 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S+M ++V   F      TIGA F+TK VQ+++ L    IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF++L   +YRG+   ++VYD+   ++F  L NW  E      P    +    + GNK D
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNKCD 122

Query: 129 VDGGNSRVVCFGEEG 143
           +   + R V    + 
Sbjct: 123 LT--DVREVME-RDA 134

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  161 bits (411), Expect = 7e-52
 Identities = 53/136 (38%), Positives = 81/136 (59%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQ
Sbjct: 14  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 73

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+SL  ++ R +   V+VYD+ +  SF   + W ++   +       +   +++GNK 
Sbjct: 74  ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKT 129

Query: 128 DVDGGNSRVVCFGEEG 143
           D+   + R V   EEG
Sbjct: 130 DLS--DKRQVST-EEG 142

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  160 bits (408), Expect = 3e-51
 Identities = 50/138 (36%), Positives = 83/138 (60%), Gaps = 7/138 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K II+GD GVGK+ L++Q+  KKF      TIG +F T+ ++   +   LQIWDTAGQ
Sbjct: 15  IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYD+    ++++L++W  +     +P    N   +++GNK 
Sbjct: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKA 130

Query: 128 DVDGGNSRVVCFGEEGSS 145
           D++    R V + EE   
Sbjct: 131 DLE--AQRDVTY-EEAKQ 145

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  160 bits (408), Expect = 5e-51
 Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAG 
Sbjct: 16  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGL 75

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+SL  ++ R +   V+VYD+ ++ SF     W ++   +       +   +++GNK 
Sbjct: 76  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKT 131

Query: 128 DVDGGNSRVVCFGEEG 143
           D+   + R V   EEG
Sbjct: 132 DLA--DKRQVSI-EEG 144

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  160 bits (406), Expect = 7e-51
 Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 7/138 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G +G GK+ L++Q++  KF      TIG +F ++ V    +   LQIWDTAGQ
Sbjct: 25  LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YRGA   +LVYD+ S +++++L  W  +    ASP    N   ++ GNK 
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKK 140

Query: 128 DVDGGNSRVVCFGEEGSS 145
           D+D    R V F  E S 
Sbjct: 141 DLD--PEREVTF-LEASR 155

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  159 bits (405), Expect = 9e-51
 Identities = 54/136 (39%), Positives = 85/136 (62%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V  + +   LQIWDTAGQ
Sbjct: 21  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E F+S+  ++YRGA   +LVYD+   ++F++L +W E+    +S     N   +++GNK 
Sbjct: 81  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKS 136

Query: 128 DVDGGNSRVVCFGEEG 143
           D++  + R V   EEG
Sbjct: 137 DLE--SRRDVKR-EEG 149

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  159 bits (405), Expect = 1e-50
 Identities = 49/136 (36%), Positives = 85/136 (62%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK 
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 144

Query: 128 DVDGGNSRVVCFGEEG 143
           D+   + R V   +E 
Sbjct: 145 DLR--HLRAVPT-DEA 157

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  158 bits (403), Expect = 2e-50
 Identities = 46/136 (33%), Positives = 79/136 (58%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGKT+L++++   +FS+  + TIG +F T+ V         QIWDTAG 
Sbjct: 25  VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LV+D+   +++  +  W +E    A          +++GNK 
Sbjct: 85  ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA----TIVVMLVGNKS 140

Query: 128 DVDGGNSRVVCFGEEG 143
           D+    +R V   EE 
Sbjct: 141 DLS--QAREVPT-EEA 153

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  158 bits (402), Expect = 2e-50
 Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G++G GK+ L++Q++ KKF +    TIG +F +K +    +   LQIWDTAGQ
Sbjct: 10  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YRGA   +LVYD+ S ++++ L NW  +  + AS     N   ++ GNK 
Sbjct: 70  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ----NIVIILCGNKK 125

Query: 128 DVDGGNSRVVCFGEEG 143
           D+D    R V F  E 
Sbjct: 126 DLD--ADREVTF-LEA 138

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  158 bits (402), Expect = 4e-50
 Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GD+ VGKT ++ ++    FS +  +TIG DF  K ++ + +   LQIWDTAGQ
Sbjct: 29  LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YR A+  +L YD+    SF ++ +W E+    A      N   +++GNK 
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS----NIVQLLIGNKS 144

Query: 128 DVDGGNSRVVCFGEEG 143
           D+     R V    E 
Sbjct: 145 DLS--ELREVSL-AEA 157

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  158 bits (401), Expect = 4e-50
 Identities = 50/136 (36%), Positives = 85/136 (62%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++ +  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK 
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 120

Query: 128 DVDGGNSRVVCFGEEG 143
           D+   + R V   +E 
Sbjct: 121 DLR--HLRAVPT-DEA 133

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  157 bits (400), Expect = 6e-50
 Identities = 55/136 (40%), Positives = 81/136 (59%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            LK++I+G+SGVGK+SL+ ++ +  F  +  ATIG DF  K +  +     L IWDTAGQ
Sbjct: 15  TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF++L  ++YRGA   +LVYDV    +F  L+NW  E     + +D      +++GNKI
Sbjct: 75  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRND---IVNMLVGNKI 131

Query: 128 DVDGGNSRVVCFGEEG 143
           D +   +R V    EG
Sbjct: 132 DKE---NREVDR-NEG 143

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  156 bits (398), Expect = 7e-50
 Identities = 44/146 (30%), Positives = 79/146 (54%), Gaps = 7/146 (4%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +PS      K++++GD GVGK++L  Q+  K F + Y  TI  D   K  + +++   L 
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILD 69

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           + DTAGQE F ++   + R  D  ++VY V    SF++++ + +  L      D ++FP 
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK---DRESFPM 126

Query: 121 VVLGNKIDVDGGNSRVVCFGEEGSSM 146
           +++ NK+D+   + R V   ++G  M
Sbjct: 127 ILVANKVDLM--HLRKVTR-DQGKEM 149

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  158 bits (401), Expect = 7e-50
 Identities = 51/136 (37%), Positives = 85/136 (62%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK++L++++   +F+   K+TIG +F T+ ++ E +    QIWDTAGQ
Sbjct: 13  LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   ++VYD++   S++N N+W  E    A      N    ++GNK 
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD----NVAVGLIGNKS 128

Query: 128 DVDGGNSRVVCFGEEG 143
           D+   + R V   EE 
Sbjct: 129 DLA--HLRAVPT-EES 141

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  157 bits (400), Expect = 8e-50
 Identities = 50/136 (36%), Positives = 84/136 (61%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 33  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS     N   +++GNK 
Sbjct: 93  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKC 148

Query: 128 DVDGGNSRVVCFGEEG 143
           D+     +VV +    
Sbjct: 149 DLT--TKKVVDY-TTA 161

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  156 bits (398), Expect = 1e-49
 Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 7/137 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K+I++GDS VGKT L  ++   +F ++ +ATIG DF  + V  +     +Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79

Query: 68  ERF-QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           ERF +S+   +YR     V VYD+ +M SF +L  W EE       +D    P +++GNK
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRILVGNK 136

Query: 127 IDVDGGNSRVVCFGEEG 143
            D+   ++  V   +  
Sbjct: 137 CDLR--SAIQVPT-DLA 150

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  157 bits (398), Expect = 1e-49
 Identities = 46/140 (32%), Positives = 71/140 (50%), Gaps = 9/140 (6%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             K+++ GD+ VGK+S + +    +F     AT+G DF  K +  +     LQ+WDTAGQ
Sbjct: 28  AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  +++R AD  +L+YDV   KSF N+  W +     A        P +++GNK 
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE----TVPIMLVGNKA 143

Query: 128 D----VDGGNSRVVCFGEEG 143
           D          + V     G
Sbjct: 144 DIRDTAATEGQKCVPG-HFG 162

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  156 bits (396), Expect = 2e-49
 Identities = 50/136 (36%), Positives = 85/136 (62%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++++G+S VGKTS + +Y +  F+  + +T+G DF  K V   D+   LQIWDTAGQ
Sbjct: 22  MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ 81

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +L+YD+ + +SF  + +W  +    +     DN   +++GNK 
Sbjct: 82  ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW----DNAQVILVGNKC 137

Query: 128 DVDGGNSRVVCFGEEG 143
           D++  + RVV   E+G
Sbjct: 138 DLE--DERVVPA-EDG 150

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  156 bits (397), Expect = 2e-49
 Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G++GVGKT L+ ++    F     ATIG DF+ K V+       LQIWDTAGQ
Sbjct: 26  LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YR A+  +L YD+   +SF  L  W  E    AS         V++GNKI
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKI 141

Query: 128 DVDGGNSRVVCFGEEG 143
           D+     R V   +  
Sbjct: 142 DLA--ERREVSQ-QRA 154

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  155 bits (394), Expect = 2e-49
 Identities = 52/136 (38%), Positives = 84/136 (61%), Gaps = 8/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           ++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQIWDTAGQ
Sbjct: 3   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  A+YRGA   +LVYD+   ++F N+  W +     A+         +++GNK 
Sbjct: 63  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKS 118

Query: 128 DVDGGNSRVVCFGEEG 143
           D++   +RVV   ++G
Sbjct: 119 DME---TRVVTA-DQG 130

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  156 bits (397), Expect = 3e-49
 Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 16/146 (10%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFT--------- 58
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +            
Sbjct: 25  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84

Query: 59  -LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A     +N
Sbjct: 85  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---YCEN 141

Query: 118 FPFVVLGNKIDVDGGNSRVVCFGEEG 143
              V++GNK D+   + R V    + 
Sbjct: 142 PDIVLIGNKADLP--DQREVNE-RQA 164

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  155 bits (393), Expect = 4e-49
 Identities = 56/136 (41%), Positives = 86/136 (63%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS     +   ++LGNK 
Sbjct: 68  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKC 123

Query: 128 DVDGGNSRVVCFGEEG 143
           DV+  + R V   E G
Sbjct: 124 DVN--DKRQVSK-ERG 136

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  155 bits (394), Expect = 5e-49
 Identities = 50/136 (36%), Positives = 84/136 (61%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS     N   +++GNK 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKC 131

Query: 128 DVDGGNSRVVCFGEEG 143
           D+     +VV +    
Sbjct: 132 DLT--TKKVVDY-TTA 144

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  155 bits (394), Expect = 5e-49
 Identities = 54/136 (39%), Positives = 80/136 (58%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            L+VII+G  GVGKTSLM ++ +  F    K+T+G DF  K V+   +   LQIWDTAGQ
Sbjct: 26  KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF S+  A+YR A   +LVYD+   ++FD+L  W +     AS     +   +++GNK+
Sbjct: 86  ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE----DAELLLVGNKL 141

Query: 128 DVDGGNSRVVCFGEEG 143
           D +    R +   ++G
Sbjct: 142 DCE--TDREITR-QQG 154

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  154 bits (392), Expect = 6e-49
 Identities = 54/136 (39%), Positives = 78/136 (57%), Gaps = 8/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++I+GDSGVGK+SL+ ++ +  FS  Y  TIG DF  + V+       LQIWDTAGQ
Sbjct: 9   LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++   +YRG    ++VYDV S +SF N+  W  E          D+   +++GNK 
Sbjct: 69  ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-----DDVCRILVGNKN 123

Query: 128 DVDGGNSRVVCFGEEG 143
           D      +VV   E+ 
Sbjct: 124 DDP--ERKVVET-EDA 136

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  155 bits (393), Expect = 9e-49
 Identities = 49/136 (36%), Positives = 85/136 (62%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQIWDTAGQ
Sbjct: 8   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRG+   ++VYDV   +SF+ +  W +E    A+         +++GNK 
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS----TVLKLLVGNKC 123

Query: 128 DVDGGNSRVVCFGEEG 143
           D+   + RVV + +  
Sbjct: 124 DLK--DKRVVEY-DVA 136

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  153 bits (390), Expect = 2e-48
 Identities = 49/136 (36%), Positives = 84/136 (61%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K V   ++   LQIWDTAGQ
Sbjct: 23  MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +L+YD+ + +SF+ + +W  +    +      N   +++GNK 
Sbjct: 83  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD----NAQVILVGNKC 138

Query: 128 DVDGGNSRVVCFGEEG 143
           D++    RVV   E+G
Sbjct: 139 DME--EERVVPT-EKG 151

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  153 bits (390), Expect = 2e-48
 Identities = 48/136 (35%), Positives = 83/136 (61%), Gaps = 7/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K +   D+   LQIWDTAG 
Sbjct: 8   MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGL 67

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +L+YD+ + +SF+ + +W  +    +      N   +++GNK 
Sbjct: 68  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD----NAQVLLVGNKC 123

Query: 128 DVDGGNSRVVCFGEEG 143
           D++  + RVV   E G
Sbjct: 124 DME--DERVVSS-ERG 136

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  152 bits (387), Expect = 7e-48
 Identities = 52/136 (38%), Positives = 84/136 (61%), Gaps = 8/136 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           ++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQ+WDTAGQ
Sbjct: 20  IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  A+YRGA   +LVYDV   ++F N+  W +     A+         +++GNK 
Sbjct: 80  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKS 135

Query: 128 DVDGGNSRVVCFGEEG 143
           D++   +RVV   ++G
Sbjct: 136 DME---TRVVTA-DQG 147

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  152 bits (385), Expect = 1e-47
 Identities = 57/146 (39%), Positives = 85/146 (58%), Gaps = 16/146 (10%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFT--------- 58
           L+K + LGDSGVGKTS++ QY + KF++++  T+G DF  K V +               
Sbjct: 11  LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70

Query: 59  -LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAG ERF+SL  AF+R A   +L++D+ + +SF N+ NW  +  + A   +PD 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD- 129

Query: 118 FPFVVLGNKIDVDGGNSRVVCFGEEG 143
              V+ GNK D++  + R V   EE 
Sbjct: 130 --IVLCGNKSDLE--DQRAVKE-EEA 150

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  151 bits (383), Expect = 1e-47
 Identities = 54/137 (39%), Positives = 81/137 (59%), Gaps = 8/137 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
             KV+++GDSGVGKT L+ ++ +  F +  + +T+G DF  K +  +     LQ+WDTAG
Sbjct: 10  AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF+S+  A+YR A   +L+YDV +  SFDN+  W  E    A      +   ++LGNK
Sbjct: 70  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH----DVALMLLGNK 125

Query: 127 IDVDGGNSRVVCFGEEG 143
           +D    + RVV   E+G
Sbjct: 126 VDSA--HERVVKR-EDG 139

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  149 bits (379), Expect = 4e-47
 Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 4/137 (2%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG++ VGK+S++ ++V+  F+   + TIGA FLT+ V   +     +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F SL   +YR A   ++VYDV   +SF    +W +E   QAS     +    ++GNKID 
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK----DIIIALVGNKIDX 120

Query: 130 DGGNSRVVCFGEEGSSM 146
                      EEG  +
Sbjct: 121 LQEGGERKVAREEGEKL 137

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  148 bits (377), Expect = 8e-47
 Identities = 40/140 (28%), Positives = 74/140 (52%), Gaps = 8/140 (5%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  K++++G  GVGK++L  Q +   F ++   TI   +  K+V  +     L I DTAG
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAG 60

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK---DSDDVPMVLVGNK 117

Query: 127 IDVDGGNSRVVCFGEEGSSM 146
            D+    +R V    +   +
Sbjct: 118 SDLA---ARTVES-RQAQDL 133

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  149 bits (379), Expect = 1e-46
 Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 7/140 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGK++L   +   +  + ++     D   + +  +    TL ++D   Q
Sbjct: 23  IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82

Query: 68  ERFQS-LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
                 L     +  D  ++V+ V   +SF  +        ++A      + P +++GNK
Sbjct: 83  GDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR--LRAG-RPHHDLPVILVGNK 139

Query: 127 IDVDGGNSRVVCFGEEGSSM 146
            D+    SR V   EEG  +
Sbjct: 140 SDLA--RSREVSL-EEGRHL 156

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  147 bits (374), Expect = 3e-46
 Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 7/146 (4%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M        K++++G  GVGK++L  Q++   F + Y  TI  D  TK    +     L 
Sbjct: 2   MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLD 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           I DTAGQE F ++   + R     +LV+ +N  +SF+ +     + L      D D+FP 
Sbjct: 61  ILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFPV 117

Query: 121 VVLGNKIDVDGGNSRVVCFGEEGSSM 146
           V++GNK D++  + R V    E S+ 
Sbjct: 118 VLVGNKADLE--SQRQVPR-SEASAF 140

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  147 bits (373), Expect = 3e-46
 Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 7/140 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGK++L   +   +  + ++     D   + +  +    TL ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 68  ERFQS-LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
                 L     +  D  ++V+ V   +SF  +        ++A      + P +++GNK
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR--LRAG-RPHHDLPVILVGNK 118

Query: 127 IDVDGGNSRVVCFGEEGSSM 146
            D+    SR V   EEG  +
Sbjct: 119 SDLA--RSREVSL-EEGRHL 135

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  145 bits (368), Expect = 2e-45
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V + G  GVGK+SL+ ++V   F   Y  T+  D   + +  +  + TLQI DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSHQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++           +LVY + S +S + L    E+  I     D ++ P +++GNK D 
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQ--ICEIKGDVESIPIMLVGNKCDE 121

Query: 130 DGGNSRVVCFGEEGSSM 146
               SR V    E  ++
Sbjct: 122 S--PSREVQS-SEAEAL 135

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  146 bits (369), Expect = 4e-45
 Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 47/177 (26%)

Query: 6   RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR---------- 55
           ++  K ++LG+S VGK+S++ +     F      TIGA F T  V   D           
Sbjct: 5   KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEK 64

Query: 56  ---------------------------LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88
                                           IWDTAGQER+ S+   +YRGA C ++V+
Sbjct: 65  NNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVF 124

Query: 89  DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSS 145
           D+++  + D    W  +  ++ S     N+  +++ NKID +      V    E   
Sbjct: 125 DISNSNTLDRAKTWVNQ--LKISS----NYIIILVANKIDKN---KFQVDI-LEVQK 171

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  144 bits (366), Expect = 5e-45
 Identities = 42/140 (30%), Positives = 76/140 (54%), Gaps = 7/140 (5%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L KVI++G  GVGK++L  Q++  +F   Y+ T    +  K+V  +     + I DTAG
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAG 61

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+++GNK
Sbjct: 62  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 118

Query: 127 IDVDGGNSRVVCFGEEGSSM 146
            D++  + R V   EE  + 
Sbjct: 119 SDLE--DKRQVSV-EEAKNR 135

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  143 bits (363), Expect = 1e-44
 Identities = 43/137 (31%), Positives = 76/137 (55%), Gaps = 7/137 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG  GVGK++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F S+   + +     +LVY + + +SF ++   R++ +        +  P +++GNK+D+
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK---RYEKVPVILVGNKVDL 120

Query: 130 DGGNSRVVCFGEEGSSM 146
           +  + R V    EG ++
Sbjct: 121 E--SEREVSS-SEGRAL 134

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  143 bits (364), Expect = 1e-44
 Identities = 41/140 (29%), Positives = 77/140 (55%), Gaps = 8/140 (5%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  K++++G  GVGK++L  Q +   F ++Y  TI   +  K+V  +     L I DTAG
Sbjct: 3   TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAG 61

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   + R  +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK
Sbjct: 62  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVK---DSEDVPMVLVGNK 118

Query: 127 IDVDGGNSRVVCFGEEGSSM 146
            D+    SR V   ++   +
Sbjct: 119 CDLP---SRTVDT-KQAQDL 134

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  143 bits (364), Expect = 1e-44
 Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 7/145 (4%)

Query: 2   PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
                 L KVI++G  GVGK++L  Q++  +F   Y+ T    +  K+V  +     + I
Sbjct: 12  SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDI 70

Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
            DTAGQE + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+
Sbjct: 71  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFL 127

Query: 122 VLGNKIDVDGGNSRVVCFGEEGSSM 146
           ++GNK D++  + R V   EE  + 
Sbjct: 128 LVGNKSDLE--DKRQVSV-EEAKNR 149

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  143 bits (364), Expect = 2e-44
 Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 8/146 (5%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MP +     +V++ G  GVGK+SL+ ++V   F + Y  TI   +  + +  +  + TLQ
Sbjct: 2   MPEQSN-DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQ 59

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           I DT G  +F ++           +LV+ V S +S + L    +   I       ++ P 
Sbjct: 60  ITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKL--IVQIKGSVEDIPV 117

Query: 121 VVLGNKIDVDGGNSRVVCFGEEGSSM 146
           +++GNK D      R V    E  ++
Sbjct: 118 MLVGNKCDET---QREVDT-REAQAV 139

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  143 bits (364), Expect = 2e-44
 Identities = 50/143 (34%), Positives = 69/143 (48%), Gaps = 9/143 (6%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MP  R    KV+ILG   VGKTSL +Q+V  +FS  Y  T+   + +K V      F L 
Sbjct: 19  MPLVR--YRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLH 75

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           + DTAGQ+ +  L  +F  G    VLVY V S+ SF  + +  ++             P 
Sbjct: 76  LVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG---HGKTRVPV 132

Query: 121 VVLGNKIDVDGGNSRVVCFGEEG 143
           V++GNK D+     R V    EG
Sbjct: 133 VLVGNKADLS--PEREVQA-VEG 152

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  142 bits (360), Expect = 5e-44
 Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 9/143 (6%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MP  +    K+ ILG   VGK+SL  Q+V  +F + Y  TI   F TK +    + + LQ
Sbjct: 1   MPQSKS--RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQ 57

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           + DTAGQ+ +      +    +  +LVY V S+KSF+ +     + L           P 
Sbjct: 58  LVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPI 114

Query: 121 VVLGNKIDVDGGNSRVVCFGEEG 143
           +++GNK D+     RV+ + EEG
Sbjct: 115 MLVGNKKDLH--MERVISY-EEG 134

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  141 bits (357), Expect = 3e-43
 Identities = 42/139 (30%), Positives = 76/139 (54%), Gaps = 7/139 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T    +  K+V  +     + I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 72

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+++GNK 
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK---EDENVPFLLVGNKS 129

Query: 128 DVDGGNSRVVCFGEEGSSM 146
           D++  + R V   EE  + 
Sbjct: 130 DLE--DKRQVSV-EEAKNR 145

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  138 bits (350), Expect = 1e-42
 Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           ++ KV++LG  GVGK++L   +             G  +  + +  +    +L ++D   
Sbjct: 1   SVYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWE 58

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           Q+  + L        D  V+VY V    SF+  +  R + L +A     D+ P +++GNK
Sbjct: 59  QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ-LRRA--RQTDDVPIILVGNK 115

Query: 127 IDVDGGNSRVVCFGEEGSSM 146
            D+    SR V   +EG + 
Sbjct: 116 SDLV--RSREVSV-DEGRAC 132

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  137 bits (348), Expect = 3e-42
 Identities = 42/140 (30%), Positives = 75/140 (53%), Gaps = 8/140 (5%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  K++++G  GVGK++L  Q +   F ++Y  TI   +  K+V  +     L I DTAG
Sbjct: 20  TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAG 78

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   + R  +  + V+ +N+ KSF ++N +RE+        D D+ P V++GNK
Sbjct: 79  QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK---DSDDVPMVLVGNK 135

Query: 127 IDVDGGNSRVVCFGEEGSSM 146
            D+    +R V   ++   +
Sbjct: 136 CDLP---TRTVDT-KQAHEL 151

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  136 bits (346), Expect = 6e-42
 Identities = 35/137 (25%), Positives = 72/137 (52%), Gaps = 6/137 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
            + ILG  G GK++L  +++ K+F ++Y   +   + + E   + +   L++ DTA  + 
Sbjct: 23  NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDT 81

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            ++    +   A   ++VY V+S +SFD+ +++ E   + A  +   + P ++LGNK+D+
Sbjct: 82  PRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ-RSIPALLLGNKLDM 139

Query: 130 DGGNSRVVCFGEEGSSM 146
                R V    EG ++
Sbjct: 140 A--QYRQVTK-AEGVAL 153

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  136 bits (346), Expect = 1e-41
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 8/137 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ I G +GVGK++L+ +++ K+F  +Y  T+ + +   +   +D + +++I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED 88

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
                    R  +  VLVYD+    SF+ +   +           P N   +++GNK D+
Sbjct: 89  TIQRE-GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK---KPKNVTLILVGNKADL 144

Query: 130 DGGNSRVVCFGEEGSSM 146
           D  +SR V   EEG  +
Sbjct: 145 D--HSRQVST-EEGEKL 158

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  135 bits (343), Expect = 1e-41
 Identities = 43/137 (31%), Positives = 79/137 (57%), Gaps = 7/137 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI   +  K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + +      LVY + +  +F++L + RE+ L      D ++ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV---KDTEDVPMILVGNKCDL 120

Query: 130 DGGNSRVVCFGEEGSSM 146
           +  + RVV   E+G ++
Sbjct: 121 E--DERVVGK-EQGQNL 134

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  135 bits (343), Expect = 1e-41
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 9/142 (6%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L +V++LGD GVGKTSL + +  K+  + +   +G D   + +  +    TL + DT  
Sbjct: 3   ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWE 61

Query: 67  QERFQSLGV--AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
            E+        +  +G    V+VY +    SF++ +  R +          D+ P +++G
Sbjct: 62  AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRT---HQADHVPIILVG 118

Query: 125 NKIDVDGGNSRVVCFGEEGSSM 146
           NK D+     R V   EEG + 
Sbjct: 119 NKADLA--RCREVSV-EEGRAC 137

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  125 bits (317), Expect = 2e-37
 Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 9/126 (7%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVQFEDR---LFTLQIW 62
           T  +V+++G+ GVGK++L N +     S       +G D   + +  +     +  L +W
Sbjct: 5   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMW 64

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           +  G+  +  L     +  D  ++VY +    SF+  +  R +          ++ P ++
Sbjct: 65  ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR---QTEDIPIIL 119

Query: 123 LGNKID 128
           +GNK D
Sbjct: 120 VGNKSD 125

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  133 bits (335), Expect = 2e-37
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 18/138 (13%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV--------QFEDRLFTL 59
            +KV ++GD   GKTSL+ Q + + F  +   T G + +TK+           E +    
Sbjct: 41  EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLF 100

Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
             WD  GQE   +    F   +   +L+ D    ++  N + W                P
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNKHYWLRHIEKYG-----GKSP 152

Query: 120 FVVLGNKIDVDGGNSRVV 137
            +V+ NKID +   S  +
Sbjct: 153 VIVVMNKIDEN--PSYNI 168

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  125 bits (316), Expect = 5e-37
 Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 12/144 (8%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-TIGADFLTKEVQFEDR---LFTLQIW 62
           T  +V+++G+ GVGK++L N +     S       +G D   + +  +     +  L +W
Sbjct: 36  TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 95

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           +  G+  +  L     +  D  ++VY +    SF+  +  R +          ++ P ++
Sbjct: 96  ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR---QTEDIPIIL 150

Query: 123 LGNKIDVDGGNSRVVCFGEEGSSM 146
           +GNK D+     R V    EG + 
Sbjct: 151 VGNKSDLV--RCREVSV-SEGRAC 171

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  113 bits (286), Expect = 9e-33
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 8/146 (5%)

Query: 2   PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
               +  LK++++GD  VGKT L+  +   +    Y  T+  +F +  +++++  F L +
Sbjct: 17  IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHL 75

Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPF 120
           WDTAGQE +  L    Y  +D  +L + VN+  SFDN++  W  E +             
Sbjct: 76  WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPE-IKHYID----TAKT 130

Query: 121 VVLGNKIDVDGGNSRVVCFGEEGSSM 146
           V++G K+D+    S  V   +EG  +
Sbjct: 131 VLVGLKVDLRKDGSDDVTK-QEGDDL 155

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  105 bits (264), Expect = 2e-29
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 16/153 (10%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M   +   +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V  + ++  L 
Sbjct: 4   MSVSKF--IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLG 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFP 119
           +WDTAGQE +  L    YRGAD  VL + + S  S++N+   W  E           N P
Sbjct: 61  LWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-----RFAPNVP 115

Query: 120 FVVLGNKID------VDGGNSRVVCFGEEGSSM 146
            V++G K+D          ++ V+    +G  +
Sbjct: 116 IVLVGTKLDLRDDKGYLADHTNVITS-TQGEEL 147

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  105 bits (263), Expect = 4e-29
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 7/121 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +KV+++GD G GKTSL+  + +  F   Y  T+   +    +Q + +   L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQD 93

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L   FY  A   +L +DV S  SFDN+ N W  E +           P +V+G K 
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPE-VNHFCK----KVPIIVVGCKT 148

Query: 128 D 128
           D
Sbjct: 149 D 149

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  104 bits (261), Expect = 5e-29
 Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 2   PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
              +   +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +
Sbjct: 24  LYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGL 82

Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPF 120
           WDTAGQE +  L    Y   D  ++ + + S  SF+N    W  E +    P    N P 
Sbjct: 83  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE-VRHHCP----NTPI 137

Query: 121 VVLGNKID 128
           +++G K+D
Sbjct: 138 ILVGTKLD 145

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  103 bits (258), Expect = 1e-28
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 9/129 (6%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M + R   +K + +GD  VGKT L+  Y +  F   Y  T+  +F +  V        L 
Sbjct: 3   MSASRF--IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLG 59

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFP 119
           +WDTAGQE +  L    YRGAD  +L + + S  S++N++  W  E L   +P      P
Sbjct: 60  LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP----GVP 114

Query: 120 FVVLGNKID 128
            V++G K+D
Sbjct: 115 IVLVGTKLD 123

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  103 bits (258), Expect = 1e-28
 Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 10/149 (6%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M + R+   K++I+GD   GKT L+  +   +F   Y  T+  +    +++ + +   L 
Sbjct: 21  MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELA 76

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFP 119
           +WDTAGQE +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P
Sbjct: 77  LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVP 131

Query: 120 FVVLGNKIDVDGGNSRVVCFGEEGSSMVC 148
            +++GNK D+           +     V 
Sbjct: 132 IILVGNKKDLRQDEHTRRELAKMKQEPVR 160

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  102 bits (255), Expect = 4e-28
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 7/121 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKTSL+  Y    +  +Y  T   D  +  V  + R   LQ+ DTAGQ+
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAF-DNFSAVVSVDGRPVRLQLCDTAGQD 79

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKI 127
            F  L    Y   D  +L + V S  SF N    W  E +    P      P +++G + 
Sbjct: 80  EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPE-IRCHCP----KAPIILVGTQS 134

Query: 128 D 128
           D
Sbjct: 135 D 135

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  100 bits (252), Expect = 1e-27
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 7/121 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD   GKT L+  +   +F   Y  T+  ++   +++ + +   L +WDTAGQE
Sbjct: 26  KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQE 84

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + V+S  S +N+   W  E +    P    N P +++ NK 
Sbjct: 85  DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPE-VKHFCP----NVPIILVANKK 139

Query: 128 D 128
           D
Sbjct: 140 D 140

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  100 bits (250), Expect = 2e-27
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 7/121 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N    W  E +    P    N P +++G K+
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPE-VRHHCP----NTPIILVGTKL 119

Query: 128 D 128
           D
Sbjct: 120 D 120

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  100 bits (250), Expect = 2e-27
 Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 7/121 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK +++GD  VGKT L+  Y N  F  +Y  T+  D     V    + + L ++DTAGQE
Sbjct: 19  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 77

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + V +  SF N    W  E L + +P    N PF+++G +I
Sbjct: 78  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE-LKEYAP----NVPFLLIGTQI 132

Query: 128 D 128
           D
Sbjct: 133 D 133

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 99.4 bits (248), Expect = 3e-27
 Identities = 29/127 (22%), Positives = 65/127 (51%), Gaps = 7/127 (5%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
           S +    K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L +W
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLW 60

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFV 121
           DT+G   + ++    Y  +D  ++ +D++  ++ D++   W+ E + +  P    N   +
Sbjct: 61  DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTKML 115

Query: 122 VLGNKID 128
           ++G K D
Sbjct: 116 LVGCKSD 122

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 99.8 bits (249), Expect = 4e-27
 Identities = 29/129 (22%), Positives = 65/129 (50%), Gaps = 7/129 (5%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M   +    K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L 
Sbjct: 21  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELS 79

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFP 119
           +WDT+G   + ++    Y  +D  ++ +D++  ++ D++   W+ E + +  P    N  
Sbjct: 80  LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTK 134

Query: 120 FVVLGNKID 128
            +++G K D
Sbjct: 135 MLLVGCKSD 143

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 99.6 bits (248), Expect = 6e-27
 Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 7/121 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G  
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSP 86

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKI 127
            + ++    Y  +D  +L +D++  ++ D+    WR E ++   P    +   +++G K 
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE-ILDYCP----STRVLLIGCKT 141

Query: 128 D 128
           D
Sbjct: 142 D 142

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 91.3 bits (227), Expect = 5e-24
 Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 14/142 (9%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-----------TIGADFLTKEV- 50
           + R    K++  G    GKT+ + +++  K     K            T+  DFL  ++ 
Sbjct: 9   ANREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG 67

Query: 51  QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWRE-EFLIQ 109
           + +       ++   GQ  + +      RG D  V V D    +   N  + R     + 
Sbjct: 68  EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA 127

Query: 110 ASPSDPDNFPFVVLGNKIDVDG 131
                 D+ P V+  NK D+  
Sbjct: 128 EYGLTLDDVPIVIQVNKRDLPD 149

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 72.3 bits (177), Expect = 4e-16
 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 15/139 (10%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA--DFLTKEVQFEDRLFTLQIWDTAGQ 67
           K++++G SG GK+S M   +   +S      +GA  D     ++F   + TL +WD  GQ
Sbjct: 5   KLLLMGRSGSGKSS-MRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNM-TLNLWDCGGQ 62

Query: 68  ERF-----QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWRE--EFLIQASPSDPDNFPF 120
           + F            ++     + V+DV S +   ++  + +  + L + SP    +   
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSP----DAKI 118

Query: 121 VVLGNKIDVDGGNSRVVCF 139
            VL +K+D+   + R   F
Sbjct: 119 FVLLHKMDLVQLDKREELF 137

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 67.3 bits (164), Expect = 8e-15
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 16/127 (12%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQ---YKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           +++++G    GK+S+     +K   N+    ++T        ++         QIWD  G
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK--IYKDDISN-SSFVNFQIWDFPG 78

Query: 67  QERFQSLGV---AFYRGADCCVLVYDVNS--MKSFDNLNNWREEFLIQASPSDPDNFPFV 121
           Q  F          +RG    + V D     M++   L+    +   + +P    +  F 
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSK-AYKVNP----DMNFE 133

Query: 122 VLGNKID 128
           V  +K+D
Sbjct: 134 VFIHKVD 140

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 65.4 bits (159), Expect = 9e-14
 Identities = 29/187 (15%), Positives = 50/187 (26%), Gaps = 69/187 (36%)

Query: 15  GDSGVGKTSLMNQYVNKK---FSNQYKATIG-ADFLTKEVQFEDRL-------------- 56
           G  G+GK+ L N++V      F   + + +  +DF  + V  +  L              
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 57  FTLQIW-------DTAGQERFQSLGVAFYRGA---------------------------- 81
             + I        D   Q    +    + + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 82  ---------DCCVLVYDV--NSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130
                    D  +L  DV     ++FD+   +      Q         P VV+  K D  
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQL---AKTKKPIVVVLTKCDEG 211

Query: 131 GGNSRVV 137
               R +
Sbjct: 212 --VERYI 216

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 65.8 bits (160), Expect = 1e-13
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 7/129 (5%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +    + L+K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L 
Sbjct: 148 IDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLG 206

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFP 119
           +WDTAG E +  L    Y   D  ++ + + S  SF ++   W  E +    P    N P
Sbjct: 207 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPE-VRHHCP----NTP 261

Query: 120 FVVLGNKID 128
            +++G K+D
Sbjct: 262 IILVGTKLD 270

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 61.9 bits (151), Expect = 8e-13
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 8/123 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+++ILG  G GKT+++ +    +     K TIG  F  + + +++    L +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVETLSYKN--LKLNVWDLGGQT 73

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +     +Y      + V D       D ++   +E  +     +  +   +V  NK D
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDK---DRMSTASKELHLMLQEEELQDAALLVFANKQD 130

Query: 129 VDG 131
             G
Sbjct: 131 QPG 133

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 61.4 bits (150), Expect = 8e-13
 Identities = 25/123 (20%), Positives = 58/123 (47%), Gaps = 8/123 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    +       TIG  F  + V++++   +  +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKN--ISFTVWDVGGQD 55

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + + L   +++     + V D N     + +N  REE +   +  +  +   +V  NK D
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 112

Query: 129 VDG 131
           +  
Sbjct: 113 LPN 115

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 61.0 bits (149), Expect = 1e-12
 Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ ++G    GKT+ +N   + +F+     T+G  F  +++   +   T+++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 78

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+S+   + RG    V + D       + +   + E             P +VLGNK D
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQ---EKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 135

Query: 129 VDG 131
           + G
Sbjct: 136 LPG 138

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 59.2 bits (144), Expect = 7e-12
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 8/123 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            KVII+G    GKT+++ Q+   +  +    TIG     +E+   +      +WD  GQE
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG--SNVEEIVINN--TRFLMWDIGGQE 76

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK D
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 133

Query: 129 VDG 131
           V  
Sbjct: 134 VKE 136

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 59.2 bits (144), Expect = 8e-12
 Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 12/125 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    +       TIG  F  + V++++      +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKN--ICFTVWDVGGQD 84

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNK 126
           + + L   +++     + V D     S D   +    +E        +  +   +V  NK
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVD-----SNDRERVQESADELQKMLQEDELRDAVLLVFANK 139

Query: 127 IDVDG 131
            D+  
Sbjct: 140 QDMPN 144

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 58.8 bits (143), Expect = 9e-12
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 8/123 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            KVII+G    GKT+++ Q+   +  +    TIG     +E+   +      +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG--SNVEEIVINN--TRFLMWDIGGQE 71

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK D
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 128

Query: 129 VDG 131
           V  
Sbjct: 129 VKE 131

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 8/123 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++V++LG    GKTS++ +            T+G     + +Q+++   + ++WD  GQ 
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDV-VTTVPTVG--VNLETLQYKN--ISFEVWDLGGQT 77

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +     ++   D  + V D       D +   + E        +      ++  NK D
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDSTDR---DRMGVAKHELYALLDEDELRKSLLLIFANKQD 134

Query: 129 VDG 131
           +  
Sbjct: 135 LPD 137

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 8/123 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++ILG  G GKT+++ +    +       TIG  F  + V +++     Q+WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIG--FNVETVTYKN--LKFQVWDLGGLT 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +     +Y   D  + V D       D +   + E +      +      VV  NK D
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 119

Query: 129 VDG 131
           ++ 
Sbjct: 120 MEQ 122

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 56.1 bits (136), Expect = 1e-10
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 8/123 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++  +        T+G  F  K ++     F L IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +S    ++   D  + V D         + + + E               ++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADR---QRMQDCQRELQSLLVEERLAGATLLIFANKQD 130

Query: 129 VDG 131
           + G
Sbjct: 131 LPG 133

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 14/134 (10%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQY-VNKKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
            R    + V+ LG    GKT+++N+   +   S     TIG  F  ++ +      +  +
Sbjct: 16  PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTV 71

Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDN--LNNWREEF--LIQASPSDPDN 117
           +D +GQ R+++L   +Y+     + V D     S D   +   +EE   L+         
Sbjct: 72  FDMSGQGRYRNLWEHYYKEGQAIIFVID-----SSDRLRMVVAKEELDTLLNHPDIKHRR 126

Query: 118 FPFVVLGNKIDVDG 131
            P +   NK+D+  
Sbjct: 127 IPILFFANKMDLRD 140

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 21/134 (15%), Positives = 38/134 (28%), Gaps = 11/134 (8%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
                   +II G    GKTSL+              +           ++    TL   
Sbjct: 43  GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVR-PTVVSQEP---LSAADYDGSGVTL--V 96

Query: 63  DTAGQERFQSLGVAFYRGA--DCCVLVYDVNSMKSFDNLNNWREEF---LIQASPSDPDN 117
           D  G  + +     + +        L++ V+S      L    E     L     S  + 
Sbjct: 97  DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 156

Query: 118 FPFVVLGNKIDVDG 131
              ++  NK ++  
Sbjct: 157 IDILIACNKSELFT 170

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 11/134 (8%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
            ++     +II G    GKTSL+         +  + T+ +        ++    TL   
Sbjct: 7   KQKSYQPSIIIAGPQNSGKTSLLTLLTT----DSVRPTVVSQEPLSAADYDGSGVTL--V 60

Query: 63  DTAGQERFQSLGVAFYRGA--DCCVLVYDVNSMKSFDNLNNWREEF---LIQASPSDPDN 117
           D  G  + +     + +        L++ V+S      L    E     L     S  + 
Sbjct: 61  DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 120

Query: 118 FPFVVLGNKIDVDG 131
              ++  NK ++  
Sbjct: 121 IDILIACNKSELFT 134

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 54.0 bits (130), Expect = 9e-10
 Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 15/136 (11%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQI 61
           +R+ +   V+ +G    GKT L  + +  ++ +    +I     +   +   +R  +L +
Sbjct: 2   ARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT--DSSAIYKVNNNRGNSLTL 58

Query: 62  WDTAGQERF-QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWRE--EFL---IQASPSDP 115
            D  G E     L   F   A   V V D     S       ++  EFL   +  S +  
Sbjct: 59  IDLPGHESLRFQLLDRFKSSARAVVFVVD-----SAAFQREVKDVAEFLYQVLIDSMALK 113

Query: 116 DNFPFVVLGNKIDVDG 131
           ++   ++  NK D+  
Sbjct: 114 NSPSLLIACNKQDIAM 129

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 8/123 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++++LG    GKT+L+ Q  ++  S+    T G  F  K VQ +   F L +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQSQG--FKLNVWDIGGQR 71

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + +    +++   D  + V D              +E             P ++  NK D
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADR---KRFEETGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 129 VDG 131
           +  
Sbjct: 129 LLT 131

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 12/125 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG    GKT+L++   + +   Q+  T+     ++E+       T   +D  G  
Sbjct: 26  GKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELTIAG--MTFTTFDLGGHI 80

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNK 126
           + + +   +    +  V + D       D+  L   +EE     +     N P ++LGNK
Sbjct: 81  QARRVWKNYLPAINGIVFLVD-----CADHERLLESKEELDSLMTDETIANVPILILGNK 135

Query: 127 IDVDG 131
           ID   
Sbjct: 136 IDRPE 140

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 53.1 bits (127), Expect = 3e-09
 Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 16/136 (11%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED--RLFTLQIWDTAGQE 68
           V+++G    GK+S + + V           + +   T     E    L  L + +  GQ 
Sbjct: 2   VLLMGVRRCGKSS-ICKVVFHNMQPLDTLYLES---TSNPSLEHFSTLIDLAVMELPGQL 57

Query: 69  RFQSLGV---AFYRGADCCVLVYDVNSMKSFDNLNNWRE--EFLIQASPSDPDNFPFVVL 123
            +          ++     V V D    +  + + N     E+  + +P    +    VL
Sbjct: 58  NYFEPSYDSERLFKSVGALVYVIDS-QDEYINAITNLAMIIEYAYKVNP----SINIEVL 112

Query: 124 GNKIDVDGGNSRVVCF 139
            +K+D    + +V   
Sbjct: 113 IHKVDGLSEDFKVDAQ 128

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 51.0 bits (123), Expect = 9e-09
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 12/125 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG    GKT+L++   N + +   + T      ++E+   +       +D  G  
Sbjct: 24  GKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWH--PTSEELAIGN--IKFTTFDLGGHI 78

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNK 126
           + + L   ++   +  V + D     + D    +  R E     + ++  + PFV+LGNK
Sbjct: 79  QARRLWKDYFPEVNGIVFLVD-----AADPERFDEARVELDALFNIAELKDVPFVILGNK 133

Query: 127 IDVDG 131
           ID   
Sbjct: 134 IDAPN 138

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 25/123 (20%), Positives = 58/123 (47%), Gaps = 8/123 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    +       TIG  F  + V++++   +  +WD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISFTVWDVGGQD 220

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + + L   +++     + V D N     + +N  REE +   +  +  +   +V  NK D
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 277

Query: 129 VDG 131
           +  
Sbjct: 278 LPN 280

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 40.8 bits (95), Expect = 6e-05
 Identities = 22/138 (15%), Positives = 40/138 (28%), Gaps = 17/138 (12%)

Query: 5   RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR--LFTLQIW 62
             ++L V + G++G GK+S +N         +  A  G   +T E        +  +  W
Sbjct: 66  DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 125

Query: 63  DTAG-----QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
           D  G           L    +   D  +++                 +            
Sbjct: 126 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISA-------TRFKKNDIDIAKAI---SMMK 175

Query: 118 FPFVVLGNKIDVDGGNSR 135
             F  +  K+D D  N  
Sbjct: 176 KEFYFVRTKVDSDITNEA 193

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 8e-05
 Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 32/124 (25%)

Query: 5   RRTLLK------VIILGDSGVGKTSLMNQYVN-----KKFSNQ-YKATIGADFLTKEV-- 50
           R+ LL+      V+I G  G GKT +            K   + +   +      + V  
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 51  --------------QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC-CVL--VYDVNSM 93
                            D    +++   + Q   + L +      +C  VL  V +  + 
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAW 259

Query: 94  KSFD 97
            +F+
Sbjct: 260 NAFN 263

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 34/141 (24%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-----GA--DFLTKEVQFEDRLFTLQI 61
           +KV+I G    GK+SL+N    ++      A I     G   D L + +  +     L I
Sbjct: 5   MKVVIAGRPNAGKSSLLNALAGRE-----AA-IVTDIAGTTRDVLREHIHIDG--MPLHI 56

Query: 62  WDTAGQ-------ERFQSLGV----AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQA 110
            DTAG        ER   +G+         AD  + + D  +  + D    W E      
Sbjct: 57  IDTAGLREASDEVER---IGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFI---- 109

Query: 111 SPSDPDNFPFVVLGNKIDVDG 131
               P   P  V+ NK D+ G
Sbjct: 110 -ARLPAKLPITVVRNKADITG 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.97
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.97
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.96
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.96
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.96
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.96
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.96
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.96
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.96
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.96
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.96
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.96
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.96
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.96
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.96
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.96
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.96
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.96
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.96
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.96
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.96
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.96
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.96
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.96
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.96
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.96
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.96
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.96
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.96
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.96
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.96
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.96
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.96
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.95
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.95
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.95
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.95
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.95
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.95
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.95
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.95
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.95
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.95
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.95
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.95
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.95
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.95
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.95
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.95
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.95
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.95
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.95
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.95
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.95
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.95
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.95
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.95
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.95
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.95
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.95
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.94
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.94
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.94
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.94
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.94
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.94
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.94
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.94
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.94
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.94
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.94
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.94
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.94
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.94
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.94
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.93
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.93
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.93
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.93
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.93
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.93
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.93
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.93
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.93
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.93
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.93
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.93
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.93
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.93
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.92
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.92
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.92
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.92
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.91
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.85
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.91
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.9
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.9
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.9
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.89
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.89
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.88
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.88
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.88
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.87
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.86
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.86
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.86
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.86
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.85
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.85
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.85
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.84
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.84
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.84
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.84
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.84
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.83
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.83
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.82
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.82
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.81
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.81
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.81
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.8
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.79
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.79
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.79
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.78
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.78
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.78
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.78
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.77
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.77
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.77
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.77
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.77
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.76
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.76
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.76
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.75
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.75
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.75
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.75
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.75
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.75
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.74
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.74
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.74
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.74
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.74
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.74
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.74
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.73
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.73
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.73
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.73
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.73
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.72
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.72
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.72
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.72
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.72
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.72
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.71
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.71
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.7
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.7
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.69
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.68
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.68
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.67
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.67
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.67
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.67
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.66
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.66
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.66
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.65
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.65
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.63
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.61
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.61
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.56
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.54
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.52
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.52
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.51
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.48
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.48
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.46
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.43
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.37
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.35
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.33
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.31
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.24
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.21
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.17
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.15
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.12
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.02
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.95
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.95
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.93
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.91
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.89
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.86
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.77
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.69
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.66
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.64
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.54
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.5
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.41
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.4
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.33
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.28
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.25
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.0
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.94
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.82
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.78
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.77
2xxa_A	433	Signal recognition particle protein; protein trans	97.74
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.7
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.67
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.63
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.63
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.62
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.58
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.52
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.52
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.52
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.49
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.49
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.47
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.46
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.45
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.45
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.45
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.44
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.43
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.4
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.4
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.39
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.38
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.35
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.34
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.34
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.34
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.33
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.31
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.31
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.29
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.29
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.29
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.28
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.28
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.27
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.27
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.26
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.26
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.25
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.25
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.24
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.24
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.24
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.23
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.23
1g6h_A	257	High-affinity branched-chain amino acid transport	97.22
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.22
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.21
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.21
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.21
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.21
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.2
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.2
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.2
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.19
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.19
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.19
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.19
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.19
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.18
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.18
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.18
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.18
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.17
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.17
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.17
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.17
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.17
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.17
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.16
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.16
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.16
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.15
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.15
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.15
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.15
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.14
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.14
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.14
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.14
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.13
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.13
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.12
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.12
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.11
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.11
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.11
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.11
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.11
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.1
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.1
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.09
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.09
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.08
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.08
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.08
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.08
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.07
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	97.06
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.05
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.05
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.05
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.04
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.04
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.03
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.03
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.03
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.03
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.03
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.03
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.03
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.02
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.02
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.01
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.01
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.99
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.99
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.99
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.99
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.99
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.99
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.98
1via_A	175	Shikimate kinase; structural genomics, transferase	96.98
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.96
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.95
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.95
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.94
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.93
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.93
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.93
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.92
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.92
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.92
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.91
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.91
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.9
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.9
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.9
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.9
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.89
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.89
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.87
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.86
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.86
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.86
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.86
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.85
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.84
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.84
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.83
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.83
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.83
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.82
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.82
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.79
3co5_A	143	Putative two-component system transcriptional RES	96.78
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.78
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.78
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.78
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.77
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.77
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.76
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.75
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.72
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.71
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.7
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.69
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.69
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.68
3bos_A	242	Putative DNA replication factor; P-loop containing	96.68
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.67
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.65
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.64
2og2_A	359	Putative signal recognition particle receptor; nuc	96.62
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.62
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.61
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.61
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.6
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.6
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.59
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.59
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.59
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.58
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.58
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.57
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.52
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.52
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.52
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.51
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.5
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.48
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.48
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.48
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.46
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.46
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.45
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.45
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.45
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.45
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.44
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.4
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.4
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.39
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.38
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.37
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.37
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.37
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.36
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.36
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	96.36
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.34
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.34
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.33
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.32
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.32
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.3
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.3
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.3
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.29
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.29
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.29
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.28
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.25
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.24
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.2
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.2
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.19
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.18
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.18
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.17
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.17
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.16
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.16
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.15
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.14
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.12
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.12
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.11
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.1
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.1
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.1
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.09
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.08
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.08
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.06
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.04
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.03
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.03
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.02
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.02
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.96
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.95
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.94
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.93
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.92
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.92
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.91
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.89
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.89
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.88
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.87
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.86
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.86
2qgz_A	308	Helicase loader, putative primosome component; str	95.86
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.84
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.83
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.81
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.81

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.4e-32  Score=188.72  Aligned_cols=141  Identities=35%  Similarity=0.646  Sum_probs=113.4

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      +.+.+||+++|++|+|||||+++|.+..+...+.++.+.++.......++..+.+.||||+|++.+..++..+++.++++
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~   89 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA   89 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence            34568999999999999999999999999999999999888888888899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhccc
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKY  153 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~  153 (156)
                      ++|||++++.+|+.+..|+..+......    ++|++|||||+|+.++  +++..++...  ++...+.
T Consensus        90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~----~~piilVgNK~Dl~~~--r~V~~~e~~~--~a~~~~~  150 (216)
T 4dkx_A           90 VVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDLADK--RQVSIEEGER--KAKELNV  150 (216)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECTTCGGG--CCSCHHHHHH--HHHHHTC
T ss_pred             EEEeecchhHHHHHHHHHHHHHHHhcCC----CCeEEEEeeccchHhc--CcccHHHHhh--HHHHhCC
Confidence            9999999999999999999999877643    7899999999999876  6666665443  3444443

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.97  E-value=2.2e-29  Score=167.50  Aligned_cols=127  Identities=40%  Similarity=0.717  Sum_probs=110.6

Q ss_pred             CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec
Q 031598            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (156)
Q Consensus         1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (156)
                      |+....+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   81 (181)
T 3tw8_B            2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG   81 (181)
T ss_dssp             ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred             CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence            55667788999999999999999999999998887788888888888888889988999999999999999999999999


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|++++|||++++.++..+..|+..+.....     +.|+++|+||+|+.+.
T Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~  128 (181)
T 3tw8_B           82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-----DVCRILVGNKNDDPER  128 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-----TSEEEEEEECTTCGGG
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCCCchh
Confidence            9999999999999999999999998877653     7899999999999865

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.97  E-value=7.1e-30  Score=170.55  Aligned_cols=128  Identities=41%  Similarity=0.766  Sum_probs=87.1

Q ss_pred             CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec
Q 031598            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (156)
Q Consensus         1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (156)
                      |+...+..++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (183)
T 2fu5_C            1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   80 (183)
T ss_dssp             --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred             CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence            55566778999999999999999999999888777777787777777778888888999999999999999999999999


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|++++|||++++.+++.+..|+..+......    +.|+++|+||+|+.++
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~  128 (183)
T 2fu5_C           81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKCDVNDK  128 (183)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEEC--CCSC
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECccCCcc
Confidence            99999999999999999999999988776432    7899999999999875

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.96  E-value=4.7e-29  Score=166.58  Aligned_cols=134  Identities=30%  Similarity=0.564  Sum_probs=114.2

Q ss_pred             CcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecc
Q 031598            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA   81 (156)
Q Consensus         2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (156)
                      +....+.+||+++|++|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+|||||++.+...+..+++.+
T Consensus        12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   90 (183)
T 3kkq_A           12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG   90 (183)
T ss_dssp             --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred             CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            34566789999999999999999999999888877778777665 66677888888999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE  141 (156)
Q Consensus        82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e  141 (156)
                      |++++|||++++.+++.+..|+..+.......   +.|+++|+||+|+.++  +.+..++
T Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~v~~~~  145 (183)
T 3kkq_A           91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRE---SFPMILVANKVDLMHL--RKVTRDQ  145 (183)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS---CCCEEEEEECTTCSTT--CCSCHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECCCchhc--cCcCHHH
Confidence            99999999999999999999999887765433   7899999999999875  4444443

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.96  E-value=7.1e-29  Score=167.27  Aligned_cols=126  Identities=38%  Similarity=0.751  Sum_probs=114.1

Q ss_pred             cccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheeccc
Q 031598            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (156)
Q Consensus         3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   82 (156)
                      ......+||+++|++++|||||+++|.+..+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|
T Consensus        11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (196)
T 3tkl_A           11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH   90 (196)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence            34456799999999999999999999999988888888888888888888998899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++|||++++.+++.+..|+..+......    +.|+++|+||+|+.++
T Consensus        91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~p~ilv~nK~Dl~~~  136 (196)
T 3tkl_A           91 GIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDLTTK  136 (196)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccc
Confidence            999999999999999999999988776543    7899999999999876

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.96  E-value=6.9e-29  Score=168.85  Aligned_cols=128  Identities=38%  Similarity=0.728  Sum_probs=113.5

Q ss_pred             CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec
Q 031598            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (156)
Q Consensus         1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (156)
                      |++.....++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (206)
T 2bcg_Y            1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG   80 (206)
T ss_dssp             --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence            55556778999999999999999999999998887778888877777788888888999999999999999999999999


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|++++|||++++.++..+..|+..+......    +.|+++|+||+|+.++
T Consensus        81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~  128 (206)
T 2bcg_Y           81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATS----TVLKLLVGNKCDLKDK  128 (206)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc
Confidence            99999999999999999999999988766532    7899999999999875

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.96  E-value=4e-29  Score=167.19  Aligned_cols=128  Identities=39%  Similarity=0.741  Sum_probs=113.5

Q ss_pred             CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec
Q 031598            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (156)
Q Consensus         1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (156)
                      |++..++.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.
T Consensus         3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   82 (186)
T 2bme_A            3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG   82 (186)
T ss_dssp             -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred             cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence            55666778999999999999999999999998887778888877777888888888899999999999999999999999


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|++++|||++++.++..+..|+..+......    +.|+++|+||+|+.++
T Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~  130 (186)
T 2bme_A           83 AAGALLVYDITSRETYNALTNWLTDARMLASQ----NIVIILCGNKKDLDAD  130 (186)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc
Confidence            99999999999999999999999888766432    7899999999999754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.96  E-value=1.5e-28  Score=163.85  Aligned_cols=130  Identities=32%  Similarity=0.525  Sum_probs=110.8

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.++|+++|++|+|||||+++|.+..+...+.++.+.++ ......++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            4579999999999999999999998888777778877666 666778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE  141 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e  141 (156)
                      +|||++++.+++.+..|+..+.......   +.|+++|+||+|+.++  +.+..++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~  133 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDLHME--RVISYEE  133 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTTT--CCSCHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECccchhc--ceecHHH
Confidence            9999999999999999999988776533   7899999999999766  4444443

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.96  E-value=1.8e-28  Score=163.24  Aligned_cols=126  Identities=36%  Similarity=0.688  Sum_probs=110.6

Q ss_pred             cccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheeccc
Q 031598            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (156)
Q Consensus         3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   82 (156)
                      ..+.+.++|+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus         7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   86 (181)
T 2efe_B            7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   86 (181)
T ss_dssp             ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred             CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence            34566799999999999999999999999888777777777777777888888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+.++
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~i~v~nK~Dl~~~  132 (181)
T 2efe_B           87 AAIIVFDVTNQASFERAKKWVQELQAQGN----PNMVMALAGNKSDLLDA  132 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECTTCTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCccccc
Confidence            99999999999999999999998887653    27899999999999865

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=8.4e-29  Score=168.28  Aligned_cols=124  Identities=40%  Similarity=0.695  Sum_probs=111.7

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  102 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL  102 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            45679999999999999999999999988877888888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.+++.+..|+..+......    +.|+++|+||+|+.++
T Consensus       103 i~v~D~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~NK~Dl~~~  146 (201)
T 2ew1_A          103 ILTYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKIDLAER  146 (201)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc
Confidence            9999999999999999999988776532    7899999999999764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.96  E-value=1.1e-28  Score=163.86  Aligned_cols=126  Identities=37%  Similarity=0.706  Sum_probs=111.3

Q ss_pred             cccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheeccc
Q 031598            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (156)
Q Consensus         3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   82 (156)
                      ....+.++|+++|.+++|||||+++|.+..+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            34556899999999999999999999999887777778777777777888888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++|||++++.++..+..|+..+......    +.|+++|+||+|+.++
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~  135 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKADLEAQ  135 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG
T ss_pred             EEEEEEeCcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc
Confidence            999999999999999999999888776532    7899999999999764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=8.6e-29  Score=166.81  Aligned_cols=127  Identities=40%  Similarity=0.713  Sum_probs=110.7

Q ss_pred             CcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecc
Q 031598            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA   81 (156)
Q Consensus         2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (156)
                      ++..++.+||+++|++|+|||||+++|.+..+.....++.+.++.......++..+.+.+|||||++.+...+..+++.+
T Consensus        17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   96 (192)
T 2fg5_A           17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS   96 (192)
T ss_dssp             ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred             ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence            34556789999999999999999999999988777788888888777787888889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++|||++++.++..+..|+..+.....    .+.|+++|+||+|+.++
T Consensus        97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~NK~Dl~~~  143 (192)
T 2fg5_A           97 AAAVIVYDITKQDSFYTLKKWVKELKEHGP----ENIVMAIAGNKCDLSDI  143 (192)
T ss_dssp             SEEEEEEETTCTHHHHHHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccccc
Confidence            999999999999999999999998877653    27899999999999754

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.96  E-value=4.1e-29  Score=166.31  Aligned_cols=132  Identities=70%  Similarity=1.221  Sum_probs=98.4

Q ss_pred             CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccchhhhhee
Q 031598            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYR   79 (156)
Q Consensus         1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~   79 (156)
                      |+....+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.++ +....+.+|||||++.+...+..+++
T Consensus         1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (182)
T 1ky3_A            1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR   80 (182)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred             CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence            56667788999999999999999999999988877777777776766666665 45578999999999999999999999


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        80 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+|++++|||++++.+++.+..|+..+..........+.|+++|+||+|+.+.
T Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  133 (182)
T 1ky3_A           81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES  133 (182)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence            99999999999999999999999999888775444458899999999999643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.96  E-value=1.1e-28  Score=164.14  Aligned_cols=128  Identities=29%  Similarity=0.522  Sum_probs=110.1

Q ss_pred             CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec
Q 031598            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (156)
Q Consensus         1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (156)
                      |+....+.++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~   80 (181)
T 2fn4_A            2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRA   80 (181)
T ss_dssp             --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred             CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence            5566777899999999999999999999999887777777766554 566778888899999999999999999999999


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|++++|||++++.++..+..|+..+.......   +.|+++|+||+|+.++
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  129 (181)
T 2fn4_A           81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD---DFPVVLVGNKADLESQ  129 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSS---CCCEEEEEECGGGGGG
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc
Confidence            999999999999999999999998886655432   7899999999999865

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.96  E-value=1.7e-28  Score=161.56  Aligned_cols=124  Identities=41%  Similarity=0.730  Sum_probs=110.9

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      +.+.++|+++|++|+|||||+++|.+..+...+.++.+.+.......+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            45679999999999999999999999888777778888887777888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.++..+..|+..+.....    ++.|+++|+||+|+.++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iilv~nK~Dl~~~  126 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQAS----PNIVIALSGNKADLANK  126 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccCccc
Confidence            999999999999999999988876643    27899999999999764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.96  E-value=1.2e-28  Score=165.60  Aligned_cols=125  Identities=38%  Similarity=0.735  Sum_probs=110.0

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc-chhhhheecccE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADC   83 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~   83 (156)
                      ..+.+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+. ..+..+++.+|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            4457999999999999999999999988877777888777777788888888999999999999888 888899999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||++++.++..+..|+..+.......   +.|+++|+||+|+.+.
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~  142 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLLAN---DIPRILVGNKCDLRSA  142 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCCS---CCCEEEEEECTTCGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc
Confidence            999999999999999999999988776333   7899999999999765

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.96  E-value=4.7e-28  Score=160.73  Aligned_cols=128  Identities=54%  Similarity=1.050  Sum_probs=111.3

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      ...+.++|+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            45678999999999999999999999988877778888888878888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      +++|||++++.++..+..|+..+..........+.|+++|+||+|+.+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~  130 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE  130 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence            999999999999999999999988777644445889999999999973

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.96  E-value=1.5e-28  Score=167.02  Aligned_cols=131  Identities=81%  Similarity=1.315  Sum_probs=112.3

Q ss_pred             CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec
Q 031598            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (156)
Q Consensus         1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (156)
                      |++...+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (207)
T 1vg8_A            1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG   80 (207)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred             CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence            66677788999999999999999999999998887778888888888888888888899999999999999999999999


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      +|++++|||++++.++..+..|+..+..........+.|+++|+||+|+.+
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  131 (207)
T 1vg8_A           81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN  131 (207)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred             CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence            999999999999999999999999888776543334789999999999984

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.96  E-value=3.8e-28  Score=160.02  Aligned_cols=124  Identities=40%  Similarity=0.741  Sum_probs=111.1

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+.++|+++|++|+|||||+++|.+..+.....++.+.+.......+.+....+.+|||||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            45679999999999999999999999988777788888888788888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.++..+..|+..+.....    ++.|+++|+||+|+.+.
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~~iilv~nK~Dl~~~  126 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGP----PSIVVAIAGNKCDLTDV  126 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSC----TTSEEEEEEECTTCGGG
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECCccccc
Confidence            999999999999999999888876533    27899999999999865

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.96  E-value=5.7e-28  Score=163.88  Aligned_cols=125  Identities=35%  Similarity=0.699  Sum_probs=111.3

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      .....+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            34567999999999999999999999998877777888877777778888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||++++.++..+..|+..+.....    .+.|+++|+||+|+.++
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~  128 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQIKTYSW----DNAQVLLVGNKCDMEDE  128 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSC----SSCEEEEEEECTTCTTS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECcccCcc
Confidence            9999999999999999999998876642    27899999999999875

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.96  E-value=3.7e-28  Score=163.22  Aligned_cols=124  Identities=36%  Similarity=0.715  Sum_probs=110.3

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ....++|+++|.+++|||||+++|.+..+...+.++.+.++....+...+..+.+.+|||||++.+...+..+++.+|++
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            44579999999999999999999999988777777887777777777888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+.++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~  142 (189)
T 2gf9_A           99 LLMYDIANQESFAAVQDWATQIKTYSW----DNAQVILVGNKCDLEDE  142 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECcccccc
Confidence            999999999999999999988877642    27899999999999765

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=5e-28  Score=159.31  Aligned_cols=122  Identities=40%  Similarity=0.717  Sum_probs=110.1

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46899999999999999999999998877778888888877888888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||++++.++..+..|+..+.....    .+.|+++|+||+|+.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~  123 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQAS----KDIIIALVGNKIDXLQE  123 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECGGGGGS
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCCcccc
Confidence            9999999999999999988887653    27899999999999765

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.96  E-value=1.6e-28  Score=165.30  Aligned_cols=125  Identities=40%  Similarity=0.746  Sum_probs=107.1

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      ...+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   96 (191)
T 2a5j_A           17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG   96 (191)
T ss_dssp             TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence            45567999999999999999999999998877777777777777778888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||++++.+++.+..|+..+......    +.|+++|+||+|+.++
T Consensus        97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~----~~piilv~nK~Dl~~~  141 (191)
T 2a5j_A           97 ALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKSDLESR  141 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccCCc
Confidence            99999999999999999999888766432    7899999999999764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=167.46  Aligned_cols=124  Identities=35%  Similarity=0.657  Sum_probs=102.8

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ....+||+++|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            34579999999999999999999999888777777777777777788888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+.++
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~NK~Dl~~~  149 (201)
T 2hup_A          106 ILAYDITKRSSFLSVPHWIEDVRKYAG----SNIVQLLIGNKSDLSEL  149 (201)
T ss_dssp             EEEEETTBHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCccccc
Confidence            999999999999999999998877653    27899999999999865

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.96  E-value=1.4e-28  Score=162.22  Aligned_cols=124  Identities=40%  Similarity=0.745  Sum_probs=103.5

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            45679999999999999999999999988777778888777777788888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.++..+..|+..+......    +.|+++|+||+|+.++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~  126 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLEKE  126 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGG----GSEEEEEEECGGGGGG
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCC----CCeEEEEEECcccccc
Confidence            9999999999999999999888766532    6899999999999865

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=7.4e-28  Score=160.17  Aligned_cols=125  Identities=39%  Similarity=0.688  Sum_probs=102.2

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheeccc
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   82 (156)
                      ..++.++|+++|.+++|||||+++|.+..+. ..+.++.+.++.......++..+.+.+|||||++.+...+..+++.+|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            3466799999999999999999999988874 455677777777777778888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+.++
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~  131 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQ----HDVALMLLGNKVDSAHE  131 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECCSTTSC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccCcc
Confidence            99999999999999999999998877654    27899999999999875

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.96  E-value=2.1e-28  Score=160.97  Aligned_cols=122  Identities=38%  Similarity=0.806  Sum_probs=109.7

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ...+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999999888777888877777788888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++.+++.+..|+..+.....     +.|+++|+||+|+.++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~  124 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLLDD  124 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHC-----SCCEEEEEECGGGGGG
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccCcc
Confidence            99999999999999999998887662     7899999999999865

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.96  E-value=3.5e-28  Score=161.37  Aligned_cols=123  Identities=39%  Similarity=0.734  Sum_probs=110.6

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999998888777888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++.++..+..|+..+......    +.|+++|+||+|+.++
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~  134 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKTDLSDK  134 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECGGGGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECCccccc
Confidence            999999999999999999888776532    7899999999999765

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=9.9e-28  Score=161.42  Aligned_cols=127  Identities=40%  Similarity=0.723  Sum_probs=111.8

Q ss_pred             CcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecc
Q 031598            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA   81 (156)
Q Consensus         2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (156)
                      .....+.++|+++|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus         9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (195)
T 1x3s_A            9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA   88 (195)
T ss_dssp             CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC
T ss_pred             ccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC
Confidence            44556679999999999999999999999988877788888888788888888889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      |++++|||++++.++..+..|+..+......   .+.|+++|+||+|+.+
T Consensus        89 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ilv~nK~Dl~~  135 (195)
T 1x3s_A           89 QGVILVYDVTRRDTFVKLDNWLNELETYCTR---NDIVNMLVGNKIDKEN  135 (195)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHTTCCSC---SCCEEEEEEECTTSSS
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCc---CCCcEEEEEECCcCcc
Confidence            9999999999999999999998888654422   3789999999999954

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.96  E-value=3.5e-29  Score=169.62  Aligned_cols=132  Identities=38%  Similarity=0.749  Sum_probs=108.2

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      .....+||+++|.+++|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  108 (199)
T 3l0i_B           29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG  108 (199)
T ss_dssp             CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence            34567999999999999999999999988877777777777778888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE  141 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e  141 (156)
                      +++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+.++  +.+..++
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~Dl~~~--~~v~~~~  160 (199)
T 3l0i_B          109 IIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLTTK--KVVDYTT  160 (199)
T ss_dssp             EEECC-CCCSHHHHHHHHHHHHHHSCC-----CCSEEEEC-CCSSCC----CCCCSCC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcc----CCCCEEEEEECccCCcc--ccCCHHH
Confidence            9999999999999999999888865443    27899999999999876  4444443

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.96  E-value=1e-27  Score=161.64  Aligned_cols=131  Identities=31%  Similarity=0.553  Sum_probs=109.8

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+.+||+++|++|+|||||+++|.+..+...+.++.+..+. .....++..+.+.+|||||++.+...+..+++.+|++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   98 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV   98 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence            455799999999999999999999999887777777766554 4566788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598           85 VLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE  141 (156)
Q Consensus        85 l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e  141 (156)
                      ++|||++++.++..+ ..|+..+.....     +.|+++|+||+|+.++..+.+..++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~  151 (194)
T 3reg_A           99 LLCFAVNNRTSFDNISTKWEPEIKHYID-----TAKTVLVGLKVDLRKDGSDDVTKQE  151 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TSEEEEEEECGGGCCTTTTCCCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccCCCCcccHHH
Confidence            999999999999997 678877776543     7899999999999875434444443

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.96  E-value=5e-28  Score=162.97  Aligned_cols=125  Identities=34%  Similarity=0.675  Sum_probs=110.6

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      ...+.++|+++|.+|+|||||+++|.+..+...+.++.+.++......+.+..+.+.+|||||++.+...+..+++.+|+
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  100 (193)
T 2oil_A           21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG  100 (193)
T ss_dssp             CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            34567999999999999999999999998887777887777777778888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||++++.++..+..|+..+.....    .+.|+++|+||+|+.+.
T Consensus       101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~----~~~piilv~nK~Dl~~~  145 (193)
T 2oil_A          101 ALLVFDLTKHQTYAVVERWLKELYDHAE----ATIVVMLVGNKSDLSQA  145 (193)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHTTSC----TTCEEEEEEECGGGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEECCCcccc
Confidence            9999999999999999889888865432    37899999999999765

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.96  E-value=4.6e-28  Score=163.31  Aligned_cols=126  Identities=41%  Similarity=0.729  Sum_probs=104.9

Q ss_pred             cccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheeccc
Q 031598            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (156)
Q Consensus         3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   82 (156)
                      ......++|+++|.+|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (192)
T 2il1_A           21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK  100 (192)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence            44566799999999999999999999998887777788878888888888888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++|||++++.+++.+..|+..+......    +.|+++|+||+|+.++
T Consensus       101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~----~~piilV~NK~Dl~~~  146 (192)
T 2il1_A          101 GIILVYDITKKETFDDLPKWMKMIDKYASE----DAELLLVGNKLDCETD  146 (192)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc
Confidence            999999999999999999998887765432    7899999999999765

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.96  E-value=8.9e-28  Score=161.32  Aligned_cols=126  Identities=40%  Similarity=0.677  Sum_probs=108.8

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEE-EEEEEECCe---------EEEEEEEeCCCcccccch
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL-TKEVQFEDR---------LFTLQIWDTAGQERFQSL   73 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~~~~~   73 (156)
                      .....++|+++|++|+|||||+++|.+..+...+.++.+.++. ...+..++.         .+.+.+|||||++.+...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            4566799999999999999999999998887777777777766 555666654         689999999999999999


Q ss_pred             hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        74 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +..+++.+|++++|||++++.++..+..|+..+.......   +.|+++|+||+|+.++
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~  142 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE---NPDIVLCGNKSDLEDQ  142 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSS---SCCEEEEEECTTCGGG
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc
Confidence            9999999999999999999999999999999887765422   7899999999999764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.95  E-value=5.5e-28  Score=159.22  Aligned_cols=121  Identities=40%  Similarity=0.785  Sum_probs=102.2

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      ..++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999998877777777777777777778878899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      |||++++.++..+..|+..+......    +.|+++|+||+|+.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~  122 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDMET  122 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECccCCc
Confidence            99999999999999999988776532    789999999999943

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.95  E-value=2.9e-28  Score=165.29  Aligned_cols=124  Identities=38%  Similarity=0.710  Sum_probs=100.5

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      .+..+||+++|++++|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            35679999999999999999999999888777777777777777778888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.++..+..|+..+.....    .+.|+++|+||+|+.++
T Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~  145 (200)
T 2o52_A          102 LLVYDITSRETYNSLAAWLTDARTLAS----PNIVVILCGNKKDLDPE  145 (200)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTC----TTCEEEEEEECGGGGGG
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCCcccc
Confidence            999999999999999999988876654    27899999999999754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.95  E-value=4.6e-28  Score=164.33  Aligned_cols=123  Identities=35%  Similarity=0.539  Sum_probs=101.7

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.+||+++|.+|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  100 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV  100 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence            4579999999999999999999999988877777776655 555555666789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++.+++.+..|+..+......   .+.|+++|+||+|+.++
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~  144 (201)
T 3oes_A          101 LVYSVTSLHSFQVIESLYQKLHEGHGK---TRVPVVLVGNKADLSPE  144 (201)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHC--------CCCEEEEEECTTCGGG
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccCccc
Confidence            999999999999999999988765432   37899999999999865

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.95  E-value=1.1e-27  Score=160.85  Aligned_cols=131  Identities=25%  Similarity=0.445  Sum_probs=104.0

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+.+||+++|++|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+|||+|++.+... ..+++.+|++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            45579999999999999999999999888777777777655 445667888899999999999888764 6688999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  140 (156)
                      ++|||++++.+++.+..|+..+...... ...+.|+++|+||+|+.++  +++..+
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~--~~v~~~  148 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKE-TQRSIPALLLGNKLDMAQY--RQVTKA  148 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEECGGGGGG--CSSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEECcchhhc--CccCHH
Confidence            9999999999999999999988876421 0127899999999999765  444443

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.8e-28  Score=166.34  Aligned_cols=124  Identities=39%  Similarity=0.741  Sum_probs=104.0

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ....++|+++|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            35679999999999999999999999988877778887777777788888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+.++
T Consensus        90 ilV~D~~~~~s~~~~~~~l~~i~~~~~----~~~piilv~nK~Dl~~~  133 (223)
T 3cpj_B           90 LIVYDISKSSSYENCNHWLSELRENAD----DNVAVGLIGNKSDLAHL  133 (223)
T ss_dssp             EEEEC-CCHHHHHHHHHHHHHHHHHCC------CEEEEEECCGGGGGG
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc
Confidence            999999999999999999998877643    27899999999999865

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.95  E-value=1.5e-27  Score=156.52  Aligned_cols=122  Identities=31%  Similarity=0.593  Sum_probs=105.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +.++|+++|++|+|||||++++.+..+...+.++.+. .......+++....+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            4589999999999999999999988877766666654 335667778888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||++++.+++.+..|+..+.......   +.|+++|+||+|+.++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~  123 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYE---KVPVILVGNKVDLESE  123 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTS---CCCEEEEEECGGGGGG
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECCccccc
Confidence            999999999999999999888765432   7899999999999754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=4.1e-29  Score=168.22  Aligned_cols=125  Identities=35%  Similarity=0.690  Sum_probs=110.4

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      ..+..+||+++|++++|||||+++|.+..+.....++.+.+.........+..+.+.+|||||++.+...+..+++.+|+
T Consensus        19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (191)
T 3dz8_A           19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG   98 (191)
T ss_dssp             EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred             ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence            34567999999999999999999999988877777777777777777777777899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||++++.+++.+..|+..+......    +.|+++|+||+|+.++
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~  143 (191)
T 3dz8_A           99 FILMYDITNEESFNAVQDWATQIKTYSWD----NAQVILVGNKCDMEEE  143 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc
Confidence            99999999999999999999988775532    7899999999999765

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.95  E-value=5.9e-28  Score=163.32  Aligned_cols=132  Identities=20%  Similarity=0.351  Sum_probs=103.5

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-hhhhheeccc
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGAD   82 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~   82 (156)
                      .....++|+++|++|+|||||+++|.+........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.+|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            345679999999999999999999975443322334444555566677888889999999999987764 7778889999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus        83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  140 (156)
                      ++++|||++++.+|..+..|+..+......   .+.|+++|+||+|+.++  +.+..+
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~  151 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPH---HDLPVILVGNKSDLARS--REVSLE  151 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTT---SCCCEEEEEECTTCTTT--CCSCHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEeechhcccc--CCcCHH
Confidence            999999999999999999999988765432   27899999999999875  444443

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.95  E-value=8.1e-28  Score=158.47  Aligned_cols=128  Identities=21%  Similarity=0.353  Sum_probs=94.8

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-hhhhheecccEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGADCCVL   86 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~l~   86 (156)
                      .+||+++|++|+|||||+++|.+........++.+.+.....+.+++..+.+.+|||||++.+.. .+..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999987766555555555666677777889899999999999988865 77777899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  140 (156)
                      |||++++.++..+..|+..+.......   +.|+++|+||+|+.++  +.+..+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~  130 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHH---DLPVILVGNKSDLARS--REVSLE  130 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTS---CCCEEEEEECTTCGGG--CCSCHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCC---CCCEEEEeeCcchhhc--ccCCHH
Confidence            999999999999999999988765432   7899999999999865  444444

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.95  E-value=1.5e-27  Score=156.77  Aligned_cols=122  Identities=30%  Similarity=0.602  Sum_probs=105.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +.++|+++|++|+|||||+++|.+..+...+.++.+... .....+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            458999999999999999999999887777777766544 4555677778899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||++++.++..+..|+..+.......   +.|+++|+||+|+.++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~  123 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTE---DVPMILVGNKCDLEDE  123 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCS---CCCEEEEEECTTCGGG
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcC---CCcEEEEEECcccccc
Confidence            999999999999999998888765432   7899999999999765

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.95  E-value=2e-27  Score=156.00  Aligned_cols=122  Identities=31%  Similarity=0.614  Sum_probs=103.5

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +.++|+++|.+|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            468999999999999999999999887776666665544 4455678888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||++++.++..+..|+..+.......   +.|+++|+||+|+.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~  124 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK  124 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCT---TSCEEEEEECGGGGGG
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECcccccc
Confidence            999999999999999999988776533   7899999999999765

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.95  E-value=2.1e-27  Score=158.65  Aligned_cols=124  Identities=31%  Similarity=0.598  Sum_probs=106.7

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+.+||+++|.+|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            34569999999999999999999999887776666665544 45566788888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.++..+..|+..+.......   +.|+++|+||+|+.++
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~  138 (187)
T 2a9k_A           94 LCVFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK  138 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCCT---TCCEEEEEECGGGGGG
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc
Confidence            99999999999999999999988776533   7899999999999765

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.95  E-value=1.5e-27  Score=163.43  Aligned_cols=121  Identities=23%  Similarity=0.499  Sum_probs=104.0

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ....+||+++|++++|||||+++|.+..+...+.++.+.++ ......++..+.+.+|||+|++.+...+..+++.+|++
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  102 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV  102 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence            34569999999999999999999999988877788877665 45556677788999999999999999999999999999


Q ss_pred             EEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           85 VLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        85 l~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      ++|||++++.++.. +..|+..+.....     +.|+++|+||+|+.+
T Consensus       103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~  145 (214)
T 3q3j_B          103 LLCFDISRPETVDSALKKWRTEILDYCP-----STRVLLIGCKTDLRT  145 (214)
T ss_dssp             EEEEETTCTHHHHHHHTHHHHHHHHHCT-----TSEEEEEEECGGGGG
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhcc
Confidence            99999999999998 6889998887653     789999999999976

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.95  E-value=8.8e-28  Score=162.71  Aligned_cols=123  Identities=36%  Similarity=0.669  Sum_probs=98.5

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+.++|+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            34569999999999999999999999887777777777777777788888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      ++|||++++.++..+..|+..+......    +.|+++|+||+|+.+
T Consensus       105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~NK~Dl~~  147 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNIREWVDMIEDAAHE----TVPIMLVGNKADIRD  147 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHC-------CCEEEEEECGGGHH
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCC----CCCEEEEEECccccc
Confidence            9999999999999999998888765432    789999999999963

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.95  E-value=3.9e-27  Score=159.85  Aligned_cols=124  Identities=31%  Similarity=0.598  Sum_probs=107.8

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+.++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   89 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   89 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence            34569999999999999999999999887777777766544 45567788888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.++..+..|+..+.......   +.|+++|+||+|+.++
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~  134 (206)
T 2bov_A           90 LCVFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK  134 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTCS---CCCEEEEEECTTCGGG
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEeccCcccc
Confidence            99999999999999999999988775433   7899999999999865

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.95  E-value=3.2e-27  Score=156.31  Aligned_cols=128  Identities=27%  Similarity=0.443  Sum_probs=95.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc--ccchhhhheecccEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLGVAFYRGADCC   84 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~~~~   84 (156)
                      +.++|+++|++|+|||||+++|.+..+... .++.+.+.....+.+++..+.+.+|||||+..  +......+++.+|++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            568999999999999999999998876543 33455566666777888888999999999887  566677788999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  140 (156)
                      ++|||++++.+++.+..|+..+.....   ..+.|+++|+||+|+.++  +++..+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~~piilv~NK~Dl~~~--~~v~~~  132 (175)
T 2nzj_A           82 VIVYSIADRGSFESASELRIQLRRTHQ---ADHVPIILVGNKADLARC--REVSVE  132 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC-------CCEEEEEECTTCTTT--CCSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhc---cCCCCEEEEEEChhhccc--cccCHH
Confidence            999999999999999999888876432   227899999999999876  444433

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.95  E-value=6.5e-27  Score=159.37  Aligned_cols=125  Identities=22%  Similarity=0.525  Sum_probs=104.5

Q ss_pred             CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec
Q 031598            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (156)
Q Consensus         1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (156)
                      |.+.....+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.
T Consensus        21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   99 (205)
T 1gwn_A           21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD   99 (205)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred             CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC
Confidence            445566789999999999999999999999988777777776554 4456667778999999999999999999999999


Q ss_pred             ccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           81 ADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        81 ~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      +|++++|||++++.++..+ ..|+..+.....     +.|+++|+||+|+.+
T Consensus       100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~  146 (205)
T 1gwn_A          100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRT  146 (205)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGG
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEechhhcc
Confidence            9999999999999999998 688888876643     789999999999975

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.95  E-value=1.3e-26  Score=155.05  Aligned_cols=123  Identities=31%  Similarity=0.578  Sum_probs=104.4

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ++.++|+++|++|+|||||+++|.+..+...+.++.. +........++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            4679999999999999999999999887776666664 444566677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++.++..+..|+..+.......   +.|+++|+||+|+.+.
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~i~v~nK~Dl~~~  124 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSE---DVPMVLVGNKCDLPSR  124 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCS---CCCEEEEEECTTSSSC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECccCccc
Confidence            9999999999999999999988765433   7899999999999853

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.95  E-value=4.5e-27  Score=157.60  Aligned_cols=128  Identities=23%  Similarity=0.385  Sum_probs=104.0

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      .+.+.+||+++|++|+|||||+++|.+..+...+.++.+  .+...+.+++..+.+.+|||+|++.+.     +++.+|+
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~   88 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA   88 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence            345679999999999999999999999988776666633  334677788988999999999988766     7788999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE  141 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e  141 (156)
                      +++|||++++.+|+.+..|+..+.....   ..+.|+++|+||+|+.+.+.+.+..++
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~v~~~~  143 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYNYFLRLCSFRN---ASEVPMVLVGTQDAISAANPRVIDDSR  143 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTTSC---GGGSCEEEEEECTTCBTTBCCCSCHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccccccccCHHH
Confidence            9999999999999999999998876532   137899999999999654334444443

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=4.6e-27  Score=160.35  Aligned_cols=121  Identities=40%  Similarity=0.785  Sum_probs=107.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ...++|+++|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            45699999999999999999999998887777788877777778888888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      +|||++++.++..+..|+..+......    +.|+++|+||+|+.
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~  138 (213)
T 3cph_A           98 LVYDVTDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDME  138 (213)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTTT----CSEEEEEEECTTCS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCc
Confidence            999999999999999999888776542    68999999999994

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.95  E-value=3e-27  Score=155.29  Aligned_cols=126  Identities=24%  Similarity=0.384  Sum_probs=84.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .+||+++|++|+|||||+++|.+...... .++.+.++ .....+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            58999999999999999999997765432 34444443 45567788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  140 (156)
                      ||++++.+++.+..|+..+......   .+.|+++|+||+|+.++  +.+..+
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~  127 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQT---DDVPIILVGNKSDLVRS--REVSVD  127 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC------CCCEEEEEECTTCCSS--CCSCHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEeccccccc--cccCHH
Confidence            9999999999999999888765432   37899999999999876  444433

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.95  E-value=1.1e-26  Score=155.43  Aligned_cols=123  Identities=22%  Similarity=0.523  Sum_probs=104.5

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      .....+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   81 (184)
T 1m7b_A            3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA   81 (184)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence            456679999999999999999999999888777777776554 4456677788899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||++++.++..+ ..|+..+.....     +.|+++|+||+|+.++
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~  126 (184)
T 1m7b_A           82 VLICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTD  126 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGGC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEEcchhhcc
Confidence            9999999999999998 688888876543     7899999999999753

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.95  E-value=7.3e-28  Score=159.91  Aligned_cols=127  Identities=35%  Similarity=0.578  Sum_probs=105.6

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC-eEEEEEEEeCCCcccccchhhhheecccE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      ..+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++ ..+.+.+|||||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45679999999999999999999998887665666766666677777766 57899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||++++.+++.+..|+..+..+..... ...|+++|+||+|+.++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~~~~iilv~nK~Dl~~~  130 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESE-TQPLVALVGNKIDLEHM  130 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHT-CCCEEEEEEECGGGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccC-CCCeEEEEEEccccccc
Confidence            9999999999999999999888876532110 13348999999999764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.95  E-value=8.8e-27  Score=157.56  Aligned_cols=118  Identities=36%  Similarity=0.729  Sum_probs=103.2

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeE----------------------------
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL----------------------------   56 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------   56 (156)
                      .+..++|+++|++++|||||+++|.+..+...+.++.+.++....+.+++..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            3457999999999999999999999998887777887777777777666544                            


Q ss_pred             ---------EEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 031598           57 ---------FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI  127 (156)
Q Consensus        57 ---------~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  127 (156)
                               ..+.+|||||++.+...+..+++.+|++++|||++++.++..+..|+..+....      +.|+++|+||+
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~------~~piilv~NK~  157 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS------NYIIILVANKI  157 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------CCEEEEEEECT
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC------CCcEEEEEECC
Confidence                     789999999999999999999999999999999999999999999998887654      47999999999


Q ss_pred             C
Q 031598          128 D  128 (156)
Q Consensus       128 D  128 (156)
                      |
T Consensus       158 D  158 (208)
T 3clv_A          158 D  158 (208)
T ss_dssp             T
T ss_pred             C
Confidence            9

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.95  E-value=9.8e-28  Score=164.33  Aligned_cols=125  Identities=42%  Similarity=0.724  Sum_probs=104.2

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCe----------EEEEEEEeCCCcccccchh
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLG   74 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~~~   74 (156)
                      .++.+||+++|++++|||||+++|.+..+...+.++.+.++....+.+++.          .+.+.+|||||++.+...+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            456799999999999999999999998877666677666666666666655          6899999999999999999


Q ss_pred             hhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        75 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+++.+|++++|||++++.++..+..|+..+.....   ..+.|+++|+||+|+.++
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~---~~~~piilV~NK~Dl~~~  156 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY---CENPDIVLIGNKADLPDQ  156 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCT---TTCCEEEEEEECTTCGGG
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---cCCCCEEEEEECCccccc
Confidence            9999999999999999999999998888776643221   137899999999999764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=5.2e-27  Score=158.49  Aligned_cols=123  Identities=28%  Similarity=0.527  Sum_probs=104.9

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+.++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++. ...+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i  102 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF  102 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence            34569999999999999999999999988777777776544 45566788889999999999887 77888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.+++.+..|+..+.......   +.|+++|+||+|+.++
T Consensus       103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~NK~Dl~~~  147 (196)
T 2atv_A          103 VLVYDITDRGSFEEVLPLKNILDEIKKPK---NVTLILVGNKADLDHS  147 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTS---CCCEEEEEECGGGGGG
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhhCCC---CCcEEEEEECcccccc
Confidence            99999999999999999998888765432   7899999999999865

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.95  E-value=1.1e-27  Score=162.66  Aligned_cols=125  Identities=28%  Similarity=0.484  Sum_probs=77.4

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcC--CCCCCCCCceeeEEEEEEEEECCe--EEEEEEEeCCCcccccchhhhheecc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQFEDR--LFTLQIWDTAGQERFQSLGVAFYRGA   81 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (156)
                      ...++|+++|++|+|||||+++|.+.  .+...+.++.+.+.....+.+++.  .+.+.+|||||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            45689999999999999999999988  666666777766666777777776  78999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      |++++|||++++.++..+..|+..+...... ...+.|+++|+||+|+.+
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~  146 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPD-RERPLRAVLVANKTDLPP  146 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSC-TTSCCEEEEEEECC----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcc-cccCCcEEEEEECcccch
Confidence            9999999999999999999999998876541 012789999999999987

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=4.4e-26  Score=153.57  Aligned_cols=122  Identities=31%  Similarity=0.590  Sum_probs=105.3

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ....++|+++|++++|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            34679999999999999999999999887776677765544 44566677788999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.++..+. .|+..+.....     +.|+++|+||+|+.++
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~  137 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYAP-----NVPFLLIGTQIDLRDD  137 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECTTSTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccc
Confidence            9999999999999987 78888877643     7899999999999874

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.94  E-value=2.4e-26  Score=152.79  Aligned_cols=127  Identities=19%  Similarity=0.353  Sum_probs=100.7

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.+||+++|++|+|||||+++|.+..+.. +.++.+..+ ...+.+++..+.+.+|||+|++.     ..+++.+|+++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            467999999999999999999999988765 566665443 56667788889999999999875     45778899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  140 (156)
                      +|||++++.++..+..|+..+...... ...+.|+++|+||+|+.+...+.+..+
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~~~~~v~~~  131 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGE-GRGGLALALVGTQDRISASSPRVVGDA  131 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCS-SSCCCEEEEEEECTTCBTTBCCCSCHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccccCcCCHH
Confidence            999999999999999887766655432 223789999999999964322444433

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.94  E-value=1.1e-26  Score=159.74  Aligned_cols=124  Identities=30%  Similarity=0.670  Sum_probs=110.7

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      .....+||+++|.+|+|||||+++|....+...+.++.+.+........++..+.+.+|||||++.+...+..+++.+|+
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   90 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC   90 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence            45567999999999999999999987766666667777788888888888889999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||++++.++..+..|+..+.....     +.|+++|+||+|+.+.
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~  134 (221)
T 3gj0_A           91 AIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKDR  134 (221)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHST-----TCCEEEEEECTTSSSC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCccccc
Confidence            9999999999999999999999988754     7899999999999865

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.94  E-value=5.8e-27  Score=160.60  Aligned_cols=125  Identities=35%  Similarity=0.616  Sum_probs=104.0

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC-eEEEEEEEeCCCcccccchhhhheeccc
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~   82 (156)
                      .....+||+++|.+|+|||||+++|.+..+...+.++.+.+.........+ ..+.+.+|||||++.+...+..++..+|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            345679999999999999999999998887776677776666555554433 3478999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++|||++++.++..+..|+..+......    +.|+++|+||+|+.+.
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~  132 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANKIDIKNR  132 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCS----SSCEEEEEECTTCC--
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc
Confidence            999999999999999999999998877653    6899999999999865

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.94  E-value=5.4e-26  Score=153.91  Aligned_cols=123  Identities=30%  Similarity=0.532  Sum_probs=97.6

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      ...+.++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            345679999999999999999999998887766666665433 4556778888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||++++.++..+. .|+..+.....     +.|+++|+||+|+.++
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~  139 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCP-----KAPIILVGTQSDLRED  139 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCS-----SSCEEEEEECGGGGGC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECHhhhhc
Confidence            99999999999999986 78888876643     7899999999999763

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.94  E-value=4.4e-26  Score=153.88  Aligned_cols=126  Identities=22%  Similarity=0.405  Sum_probs=98.6

Q ss_pred             cccceeEEEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecc
Q 031598            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA   81 (156)
Q Consensus         3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (156)
                      .......+|+++|.+++|||||+++|.+..+.. .+.++.+...  ..+....  +.+.+|||||++.+...+..+++.+
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~   87 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNI   87 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcC
Confidence            345567999999999999999999999998877 6677776443  3334344  7899999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCC----CCCCCCcEEEEEecCCCCCC
Q 031598           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASP----SDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++|||++++.+|..+..|+..+......    ....+.|+++|+||+|+.+.
T Consensus        88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  142 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA  142 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence            9999999999999999998888887654210    01126799999999999876

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.94  E-value=1.2e-25  Score=147.08  Aligned_cols=121  Identities=29%  Similarity=0.552  Sum_probs=104.2

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .++|+++|.+|+|||||++++.+..+.....++.+.. .......++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            5899999999999999999999888776666666543 355566788888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||++++.++..+..|+..+.......   +.|+++|+||+|+.+.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~---~~p~iiv~nK~Dl~~~  123 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSD---DVPMVLVGNKSDLAAR  123 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCS---CCCEEEEEECTTCSCC
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEEchhhhhc
Confidence            99999999999999999888765432   6899999999999863

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.94  E-value=1e-25  Score=152.80  Aligned_cols=123  Identities=27%  Similarity=0.571  Sum_probs=104.8

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      .....+||+++|.+|+|||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   99 (201)
T 2gco_A           21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV   99 (201)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence            3455799999999999999999999998887776777665543 345678888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||++++.++..+ ..|...+.....     +.|+++|+||+|+.++
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~  144 (201)
T 2gco_A          100 ILMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVGNKKDLRQD  144 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGTTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEecHHhhcC
Confidence            9999999999999998 677777766543     7899999999999875

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.94  E-value=1.6e-25  Score=150.32  Aligned_cols=123  Identities=31%  Similarity=0.551  Sum_probs=94.9

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+.++|+++|.+|+|||||+++|.+..+...+.++.+.. ....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus        18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   96 (190)
T 3con_A           18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF   96 (190)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred             ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence            4456999999999999999999999888776666665443 345666788888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      ++|||++++.++..+..|+..+.......   +.|+++|+||+|+.+
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~p~ilv~nK~Dl~~  140 (190)
T 3con_A           97 LCVFAINNSKSFADINLYREQIKRVKDSD---DVPMVLVGNKCDLPT  140 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTCS---CCCEEEEEECTTCSC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECCcCCc
Confidence            99999999999999999998887765432   689999999999986

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=2.8e-26  Score=151.18  Aligned_cols=123  Identities=26%  Similarity=0.466  Sum_probs=102.6

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +.++|+++|++|+|||||+++|.+..+...+.++.+.++ ......++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            468999999999999999999999887666666665443 3445667778899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||++++.+++.+..|+..+......  ..+.|+++|+||+|+.+.
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~pii~v~nK~Dl~~~  124 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGD--VESIPIMLVGNKCDESPS  124 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGG
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEEccccccc
Confidence            99999999999988888887765431  126899999999999765

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.94  E-value=1.2e-25  Score=150.12  Aligned_cols=121  Identities=29%  Similarity=0.601  Sum_probs=104.0

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.++|+++|++|+|||||+++|.+..+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            4579999999999999999999998887766666665443 455667888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++.++..+. .|+..+.....     +.|+++|+||+|+.+.
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~  124 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDD  124 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-----TSCEEEEEECHHHHTC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCC-----CCCEEEEeEccccccc
Confidence            999999999999986 68888776543     7899999999999764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.94  E-value=8.4e-26  Score=154.69  Aligned_cols=121  Identities=34%  Similarity=0.614  Sum_probs=84.9

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.++|+++|++|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4569999999999999999999998887766666664433 455677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++.++..+. .|+..+.....     +.|+++|+||+|+.++
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~  153 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFCK-----KVPIIVVGCKTDLRKD  153 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCS-----SCCEEEEEECGGGGSC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhhcc
Confidence            999999999999986 68888876543     7899999999999875

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.94  E-value=6.4e-26  Score=154.78  Aligned_cols=122  Identities=34%  Similarity=0.643  Sum_probs=103.4

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+.++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   84 (212)
T 2j0v_A            6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF   84 (212)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence            34679999999999999999999999887777677766444 44556777788999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.++..+. .|+..+.....     +.|+++|+||+|+.++
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~  128 (212)
T 2j0v_A           85 VLAFSLISKASYENVLKKWMPELRRFAP-----NVPIVLVGTKLDLRDD  128 (212)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeCHHhhhC
Confidence            9999999999999986 78888876643     7899999999999765

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=4.1e-26  Score=156.09  Aligned_cols=130  Identities=21%  Similarity=0.366  Sum_probs=99.6

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCC--CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc-ccchhhhheecc
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGA   81 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~   81 (156)
                      ....+||+++|++|+|||||+++|.+...  ... .++.+.+.....+.+++..+.+.+|||+|+.. ...+...+++.+
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            44569999999999999999999996432  222 23345555566677888888999999999876 455666778899


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus        82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  140 (156)
                      +++++|||++++.+|+.+..|+..+.....   ..++|+++|+||+|+.+.  +++..+
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~---~~~~piilVgNK~DL~~~--r~v~~~  166 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQ---TEDIPIILVGNKSDLVRC--REVSVS  166 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGG---GTTSCEEEEEECTTCGGG--CCSCHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCcEEEEEEChHHhcC--ceEeHH
Confidence            999999999999999999988887764322   127899999999999764  444433

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.94  E-value=2e-25  Score=149.80  Aligned_cols=121  Identities=25%  Similarity=0.464  Sum_probs=101.2

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      .++.++|+++|.+|+|||||+++|.+..+...+.++.+.++..  +...+  +.+.+|||||++.+...+..+++.+|++
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAI   94 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence            3457999999999999999999999988776667777665432  33444  7899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.++..+..|+..+.....   ..+.|+++|+||+|+.+.
T Consensus        95 i~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~  139 (188)
T 1zd9_A           95 VYMVDAADQEKIEASKNELHNLLDKPQ---LQGIPVLVLGNKRDLPGA  139 (188)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCcc---cCCCCEEEEEECCCCccC
Confidence            999999999999999888887764322   127899999999999865

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=2.2e-25  Score=151.76  Aligned_cols=121  Identities=26%  Similarity=0.560  Sum_probs=98.8

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ...+||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            45689999999999999999999998887766666665543 33567888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++.++..+ ..|+..+.....     +.|+++|+||+|+.+.
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~  144 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFCP-----NVPIILVANKKDLRSD  144 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGGGC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhhhcc
Confidence            99999999999998 678877766543     7899999999999765

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.93  E-value=4e-25  Score=147.84  Aligned_cols=119  Identities=21%  Similarity=0.460  Sum_probs=99.0

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.++|+++|++|+|||||++++.+.. ...+.++.+..  ...+.+++  ..+++|||||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            467999999999999999999999887 55556666543  34455554  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++.+++.+..|+..+.....   ..+.|+++|+||+|+.++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~  134 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEER---LAGATLLIFANKQDLPGA  134 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChh---cCCCcEEEEEeCccCCCC
Confidence            99999999999999888887765422   227899999999999875

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.93  E-value=2.3e-25  Score=151.48  Aligned_cols=122  Identities=29%  Similarity=0.571  Sum_probs=102.2

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+.+||+++|.+|+|||||+++|.+..+...+.++.+ +.......+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            34569999999999999999999998887766666664 34455666778888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.++..+. .|+..+.....     +.|+++|+||+|+.+.
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~  149 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDD  149 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCS-----SCCEEEEEECHHHHTC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEechhhccc
Confidence            9999999999999986 78888776652     7899999999999875

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.93  E-value=6.9e-25  Score=147.29  Aligned_cols=123  Identities=20%  Similarity=0.344  Sum_probs=99.1

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      ..+.++|+++|.+|+|||||+++|.+.. +...+.++.+.  ....+.+++  ..+.+|||||++.+...+..+++.+|+
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA   93 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            3456999999999999999999999877 45555566553  344455554  789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||++++.++..+..|+..+...... ...+.|+++|+||+|+.++
T Consensus        94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~  141 (190)
T 2h57_A           94 IIFVIDSSDRLRMVVAKEELDTLLNHPDI-KHRRIPILFFANKMDLRDA  141 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHSTTT-TTSCCCEEEEEECTTSTTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhh-ccCCCeEEEEEeCcCcccC
Confidence            99999999999999998888888765322 0137899999999999864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=5.4e-25  Score=148.49  Aligned_cols=125  Identities=26%  Similarity=0.461  Sum_probs=104.7

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ....++|+++|.+++|||||+++|.+..+...+.++.+.++ ......++..+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            45679999999999999999999999887766666665443 34456678888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.++..+..|+..+......  ..+.|+++|+||+|+.+.
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~piilv~nK~Dl~~~  129 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKGS--VEDIPVMLVGNKCDETQR  129 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHSC--GGGSCEEEEEECTTCSSC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccCCcc
Confidence            9999999999999988888777665432  126799999999999763

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.93  E-value=3e-25  Score=145.44  Aligned_cols=116  Identities=18%  Similarity=0.415  Sum_probs=94.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|+|||||+++|.+..+.. +.++.+..  ...+...+  +.+.+|||||++.+...+..+++.+|++++||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877653 35555432  33344333  78999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++.++..+..|+..+.....   ..+.|+++|+||+|+.++
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~  116 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDE---LRDAVLLVFANKQDLPNA  116 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC
T ss_pred             ECCCHHHHHHHHHHHHHHHhchh---hcCCeEEEEEECcCCcCC
Confidence            99999999998888887764322   237899999999999765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.93  E-value=4.4e-26  Score=151.80  Aligned_cols=122  Identities=33%  Similarity=0.630  Sum_probs=89.3

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+.+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   83 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence            34569999999999999999999998887666566554332 22233455667889999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.+++.+. .|+..+.....     +.|+++|+||+|+.++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~  127 (182)
T 3bwd_D           84 ILAFSLISKASYENVSKKWIPELKHYAP-----GVPIVLVGTKLDLRDD  127 (182)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEechhhhcC
Confidence            9999999999999987 68888876643     7899999999999765

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.93  E-value=1.7e-24  Score=142.63  Aligned_cols=119  Identities=21%  Similarity=0.370  Sum_probs=97.8

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ++.++|+++|++|+|||||+++|.+..+.. ..++.+..  ...+.+++  ..+.+|||||++.+...+..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            456999999999999999999999887643 45555433  34455554  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++.++.....|+..+.....   ..+.|+++|+||+|+.+.
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~  123 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEE---LRKAILVVFANKQDMEQA  123 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchh---hCCCEEEEEEECCCCcCC
Confidence            99999999999998888877764322   137899999999999875

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.93  E-value=1.8e-24  Score=145.53  Aligned_cols=119  Identities=23%  Similarity=0.388  Sum_probs=97.3

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.++|+++|++|+|||||++++.+..+. .+.++.+.+  ...+.+++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            44679999999999999999999988764 345555543  44556666  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++.+++.+..|+..+.....   ..+.|+++|+||+|+.+.
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~  139 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAE---LKDVPFVILGNKIDAPNA  139 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTC
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchh---hcCCCEEEEEECCCCcCC
Confidence            99999999999999988888765422   127899999999999863

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.93  E-value=4.1e-25  Score=147.44  Aligned_cols=120  Identities=23%  Similarity=0.369  Sum_probs=96.7

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+.++|+++|.+|+|||||+++|.+..+ ....++.+...  ..+.+++  ..+.+|||||++.+...+..+++.+|++
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   92 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFV   92 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEE
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            44579999999999999999999998876 33445544332  3444555  7899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.++..+..|+..+.....   ..+.|+++|+||+|+.+.
T Consensus        93 i~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~  137 (181)
T 2h17_A           93 IVVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKEC  137 (181)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChh---hCCCeEEEEEECCCcccC
Confidence            999999999999999888887765321   227899999999999764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.93  E-value=1.3e-25  Score=151.20  Aligned_cols=123  Identities=23%  Similarity=0.305  Sum_probs=93.1

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC-----------CCceeeEEEEEEE-EECCeEEEEEEEeCCCccccc
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-----------KATIGADFLTKEV-QFEDRLFTLQIWDTAGQERFQ   71 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~   71 (156)
                      .....+||+++|++|+|||||++.+.+.. ...+           .++.+.++..... ..++..+.+++|||||++.+.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            45668999999999999999997666543 3222           2344444333333 456677899999999999999


Q ss_pred             chhhhheecccEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           72 SLGVAFYRGADCCVLVYDVN------SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        72 ~~~~~~~~~~~~~l~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+..+++.+|++++|||++      +..++..+..|+..+.     ....+.|+++|+||+|+.++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-----~~~~~~piilv~NK~Dl~~~  150 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-----LTLDDVPIVIQVNKRDLPDA  150 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-----CCTTSSCEEEEEECTTSTTC
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-----cccCCCCEEEEEEchhcccc
Confidence            99999999999999999999      4556666666666552     22348899999999999864

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.93  E-value=8.5e-25  Score=148.05  Aligned_cols=118  Identities=19%  Similarity=0.341  Sum_probs=90.9

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.++|+++|++|+|||||+++|.+..+. .+.++.+.+  ...+.+++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            44689999999999999999999987754 334554443  34455666  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      +|||++++.+|..+..|+..+.....   ..+.|+++|+||+|+.+
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~  140 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDET---IANVPILILGNKIDRPE  140 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG---GTTSCEEEEEECTTSTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEEECCCccc
Confidence            99999999999999988888765422   22789999999999975

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=4.9e-25  Score=147.69  Aligned_cols=119  Identities=23%  Similarity=0.380  Sum_probs=94.2

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ++.++|+++|.+++|||||+++|.+..+. .+.++.+..  ...+.+++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999987765 444554433  33444555  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++.++..+..|+..+.....   ..+.|+++|+||+|+.++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~  132 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKEC  132 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGG---GTTCEEEEEEECTTSTTC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchh---hCCCeEEEEEECCCCcCC
Confidence            99999999999999888888865421   127899999999999864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.93  E-value=8.5e-25  Score=147.43  Aligned_cols=123  Identities=20%  Similarity=0.391  Sum_probs=95.3

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCC--CCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc-ccchhhhheeccc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKK--FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGAD   82 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~   82 (156)
                      ...+||+++|++|+|||||+++|.+..  +... .++.+.+.....+.+++..+.+.+|||+|... ...+...+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            456999999999999999999998633  2222 23344555566677888888999999999776 4556677888999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++|||++++.+|+.+..|+..+......   .+.|+++|+||+|+.++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~---~~~piilV~NK~Dl~~~  129 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQT---EDIPIILVGNKSDLVRX  129 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTT---SCCCEEEEEECTTCGGG
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCeEEEEEechhhhcc
Confidence            999999999999999999998887765332   27899999999999754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.93  E-value=8.9e-25  Score=145.94  Aligned_cols=120  Identities=25%  Similarity=0.453  Sum_probs=96.7

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      +...++|+++|++|+|||||+++|.+..+. ...++.+..  ...+.+++  +.+.+|||||++.+...+..+++.+|++
T Consensus        13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   87 (181)
T 1fzq_A           13 PDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (181)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            356799999999999999999999987542 234444432  33445554  7899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.++..+..|+..+.....   ..+.|+++|+||+|+.+.
T Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~  132 (181)
T 1fzq_A           88 IYVIDSADRKRFEETGQELTELLEEEK---LSCVPVLIFANKQDLLTA  132 (181)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTCGG---GTTCCEEEEEECTTSTTC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHhChh---hcCCCEEEEEECcCcccC
Confidence            999999999999998888877654321   237899999999999865

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.93  E-value=6.7e-25  Score=147.87  Aligned_cols=119  Identities=18%  Similarity=0.418  Sum_probs=91.8

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.++|+++|++|+|||||+++|.+..+.. +.++.+  .....+...+  +.+.+|||||++.+...+..+++.+|+++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            456999999999999999999999877542 334433  2333444444  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++.++..+..|+..+.....   ..+.|+++|+||+|+.+.
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~---~~~~piilv~NK~Dl~~~  145 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDE---LRDAVLLVFANKQDMPNA  145 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccc---cCCCeEEEEEECCCCCCC
Confidence            99999999999999888887764322   237899999999999765

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.92  E-value=2.4e-24  Score=145.84  Aligned_cols=123  Identities=38%  Similarity=0.741  Sum_probs=104.8

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ...++|+++|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            45799999999999999999999999887777777777777778888998889999999999999888888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||..+..++..+..|+..+.....    .+.|+++|+||+|+.+.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~i~~v~nK~Dl~~~  125 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL  125 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEECcccccc
Confidence            99999999999988888877765432    26799999999999764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.92  E-value=1.4e-24  Score=145.58  Aligned_cols=119  Identities=18%  Similarity=0.353  Sum_probs=96.7

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ++.++|+++|++++|||||++++.+..+.. +.++.+..  ...+.+++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            467999999999999999999998776543 34454432  33444554  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++.++..+..|+..+....   ...+.|+++|+||+|+.++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~  138 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDED---ELRKSLLLIFANKQDLPDA  138 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCS---TTTTCEEEEEEECTTSTTC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhh---hcCCCeEEEEEECCCCcCC
Confidence            9999999999999888877775432   2237899999999999875

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.92  E-value=5.5e-25  Score=147.26  Aligned_cols=120  Identities=29%  Similarity=0.504  Sum_probs=90.1

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC--CCCCCCCCceeeEEEEEEEEE---CCeEEEEEEEeCCCcccccchhhhheeccc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   82 (156)
                      .+||+++|++|||||||+++|.+.  .+...+.++.+.+.....+..   .+..+.+.+|||+|++.+...+..+++.++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  344445666666655444332   234578999999999999888899999999


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           83 CCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        83 ~~l~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++|||++++ .++..+..|+..+.....     +.|+++|+||+|+.++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~  127 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-----SSPVILVGTHLDVSDE  127 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-----TCEEEEEEECGGGCCH
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-----CCcEEEEEECCCcccc
Confidence            99999999997 578889999988876542     6899999999999865

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=1.1e-24  Score=145.26  Aligned_cols=119  Identities=22%  Similarity=0.419  Sum_probs=93.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ++.++|+++|++|+|||||++++.+..+ ..+.++.+..  ...+.+++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5679999999999999999999997765 3344555433  33445555  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++.+++.+..|+..+.....   ..+.|+++|+||+|+.++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~  134 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEE---LQDAALLVFANKQDQPGA  134 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSST---TSSCEEEEEEECTTSTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChh---hCCCeEEEEEECCCCCCC
Confidence            99999999999998888887764322   237899999999999864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.91  E-value=8.6e-24  Score=142.35  Aligned_cols=123  Identities=37%  Similarity=0.733  Sum_probs=107.3

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ...++|+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            45699999999999999999999999888778888888888888888998888999999999988888888889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||..+..+++.+..|+..+.....    .+.|+++|+||+|+.+.
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~i~~v~nK~Dl~~~  149 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL  149 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECcccccc
Confidence            99999999999888888877655432    26799999999999764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.85  E-value=4.5e-26  Score=154.77  Aligned_cols=121  Identities=29%  Similarity=0.598  Sum_probs=99.4

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.+||+++|.+|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4569999999999999999999998877665555554333 344455666788999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++.++..+. .|+..+.....     +.|+++|+||+|+.++
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-----~~piilv~NK~Dl~~~  149 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDD  149 (204)
Confidence            999999999999886 67776654332     6899999999999865

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.91  E-value=4.2e-24  Score=144.28  Aligned_cols=121  Identities=18%  Similarity=0.255  Sum_probs=87.7

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEE--EEEEEC-CeEEEEEEEeCCCcccccchh---hhh
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT--KEVQFE-DRLFTLQIWDTAGQERFQSLG---VAF   77 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~i~D~~g~~~~~~~~---~~~   77 (156)
                      ...+.+||+++|++++|||||++++.+.... .  ++.+.+...  ....+. +..+.+++|||+|++.+....   ..+
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            4556799999999999999999988875322 2  222222222  222232 455789999999999987666   789


Q ss_pred             eecccEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           78 YRGADCCVLVYDVNSM--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        78 ~~~~~~~l~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++.+|++++|||++++  +++..+..|+..+.....     +.|+++|+||+|+.++
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~-----~~piilv~nK~Dl~~~  144 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP-----DMNFEVFIHKVDGLSD  144 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT-----TCEEEEEEECGGGSCH
T ss_pred             cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC-----CCcEEEEEeccccCch
Confidence            9999999999999997  666666667766644332     7899999999999763

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.90  E-value=2.8e-23  Score=141.80  Aligned_cols=125  Identities=18%  Similarity=0.256  Sum_probs=89.8

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCe-EEEEEEEeCCCcccccc-hhhhheecc
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR-LFTLQIWDTAGQERFQS-LGVAFYRGA   81 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~   81 (156)
                      .+.+.++|+++|++|+|||||+++|.+..+...+.++ +.+...  +.+++. .+.+.+|||||++.+.. ++..+++.+
T Consensus         3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   79 (214)
T 2fh5_B            3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSA   79 (214)
T ss_dssp             -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGE
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhC
Confidence            3456799999999999999999999988876655433 333332  555543 57899999999998887 788889999


Q ss_pred             cEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           82 DCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        82 ~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++|||+++.. ++.....++..+..... ....+.|+++|+||+|+.+.
T Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~  130 (214)
T 2fh5_B           80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSM-ALKNSPSLLIACNKQDIAMA  130 (214)
T ss_dssp             EEEEEEEETTTHHHHHHHHHHHHHHHHHHHH-TSTTCCEEEEEEECTTSTTC
T ss_pred             CEEEEEEECCCcCHHHHHHHHHHHHHHhhhh-hcccCCCEEEEEECCCCCCc
Confidence            9999999999854 45555554444432211 11226899999999999876

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.90  E-value=5e-23  Score=148.90  Aligned_cols=121  Identities=28%  Similarity=0.597  Sum_probs=103.6

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ...++|+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            3458999999999999999999998887776666665443 555677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++.++..+. .|...+.....     +.|+++|+||+|+.+.
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~  274 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDD  274 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-----TSCEEEEEECHHHHTC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhCC-----CCcEEEEEEchhcccc
Confidence            999999999999986 67777766543     7899999999999764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.90  E-value=2.4e-23  Score=138.05  Aligned_cols=119  Identities=22%  Similarity=0.242  Sum_probs=90.9

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      ...+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++  ..+.+|||||++.+...+..++..+|+
T Consensus         4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   81 (178)
T 2lkc_A            4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDI   81 (178)
T ss_dssp             TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence            456679999999999999999999999887766555555555455566666  467899999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||++++....... .+..+   ..    .+.|+++|+||+|+.+.
T Consensus        82 ~i~v~d~~~~~~~~~~~-~l~~~---~~----~~~p~ilv~nK~Dl~~~  122 (178)
T 2lkc_A           82 VILVVAADDGVMPQTVE-AINHA---KA----ANVPIIVAINKMDKPEA  122 (178)
T ss_dssp             EEEEEETTCCCCHHHHH-HHHHH---GG----GSCCEEEEEETTTSSCS
T ss_pred             EEEEEECCCCCcHHHHH-HHHHH---Hh----CCCCEEEEEECccCCcC
Confidence            99999998843222211 11222   11    17899999999999864

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.89  E-value=9.6e-23  Score=146.56  Aligned_cols=121  Identities=21%  Similarity=0.337  Sum_probs=92.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCC---CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc-----cchhhhhe
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-----QSLGVAFY   78 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~   78 (156)
                      ..+||+++|++|+|||||++++.+....   ..+.+|.+....  .+.+.+ .+.+.+|||||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4589999999999999999999877322   233455444433  344433 478999999999988     67888888


Q ss_pred             ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        79 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +.+|++++|||++++.+++.+..|...+......  .++.|+++|+||+|+.++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~  130 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQL  130 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCH
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccch
Confidence            9999999999999999999987776555433211  127899999999999873

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.89  E-value=6.3e-23  Score=148.76  Aligned_cols=118  Identities=18%  Similarity=0.405  Sum_probs=90.3

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +.++|+|+|.+++|||||+++|.+..+... .++.+..  ...+...+  +.+++|||||++.+..++..+++.+|++++
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            457999999999999999999998875432 2333333  23344444  789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||++++.+|..+..++..+.....   ..++|+++|+||+|+.+.
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilV~NK~Dl~~~  281 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDE---LRDAVLLVFANKQDLPNA  281 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhc---cCCCeEEEEEECccCCcc
Confidence            9999999999998887777654332   237899999999999875

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.8e-23  Score=140.59  Aligned_cols=118  Identities=14%  Similarity=0.153  Sum_probs=89.1

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCC---CCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec--
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ---YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG--   80 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~--   80 (156)
                      .+.++|+++|++|+|||||+++|.+..+...   ..++.+         .......+.+|||||+..+...+..++..  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            4568999999999999999999998875431   111111         11133578999999999888888877766  


Q ss_pred             --ccEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           81 --ADCCVLVYDVN-SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        81 --~~~~l~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                        +|++++|||++ ++.++..+..|+..+..........+.|+++|+||+|+.+.
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  171 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  171 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence              89999999999 89999998888888765532101227899999999999876

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.88  E-value=2.7e-23  Score=142.27  Aligned_cols=119  Identities=15%  Similarity=0.178  Sum_probs=92.5

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCC---CCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec-
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ---YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG-   80 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~-   80 (156)
                      ..+.++|+++|++|+|||||+++|.+..+...   ..++.+.+         .....+.+|||||++.+...+..+++. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT---------GGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE---------eeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            45679999999999999999999998875431   22222211         133579999999999998888888877 


Q ss_pred             ---ccEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           81 ---ADCCVLVYDVN-SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        81 ---~~~~l~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                         +|++++|||.+ ++.++.....|+..+..........+.|+++|+||+|+...
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  135 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  135 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence               89999999999 88889988888888776532101227899999999999876

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.88  E-value=2.4e-23  Score=149.59  Aligned_cols=114  Identities=18%  Similarity=0.214  Sum_probs=82.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCC---CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc---hhhhheecccE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---LGVAFYRGADC   83 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~   83 (156)
                      ||+++|++|+|||||++++.+...+.   ...++.+.+...    ++ ..+.++||||+|++.+..   ....+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887654332   235566554432    22 237899999999999964   46789999999


Q ss_pred             EEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           84 CVLVYDVNSM--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        84 ~l~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      +++|||++++  +++..+..|+..+....     +++|+++||||+|+.+++
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-----~~ipillvgNK~DL~~~~  122 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-----PSINIEVLIHKVDGLSED  122 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHC-----TTCEEEEECCCCCSSCSH
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcC-----CCCcEEEEEECcccCchh
Confidence            9999999998  22222333333333322     278999999999998763

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.88  E-value=4.7e-22  Score=137.22  Aligned_cols=124  Identities=20%  Similarity=0.111  Sum_probs=82.5

Q ss_pred             CcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cc
Q 031598            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QS   72 (156)
Q Consensus         2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~   72 (156)
                      |....+.++|+++|.+|+|||||+++|.+..+.....+..+.+.........+  ..+.+|||||+...         ..
T Consensus        23 P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~  100 (228)
T 2qu8_A           23 PSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMT  100 (228)
T ss_dssp             CSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHH
Confidence            33345679999999999999999999998875422222222233333344444  67999999998321         11


Q ss_pred             hhhhheecccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           73 LGVAFYRGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        73 ~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+..++..+|++++|||++++.++..  ...|+..+....     .+.|+++|+||+|+.+.
T Consensus       101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-----~~~piilv~nK~Dl~~~  157 (228)
T 2qu8_A          101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-----SNKSIVIGFNKIDKCNM  157 (228)
T ss_dssp             HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC------CCCEEEEEECGGGCC-
T ss_pred             HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-----cCCcEEEEEeCcccCCc
Confidence            12334677899999999999877652  234555554322     27899999999999875

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.87  E-value=8.3e-22  Score=130.55  Aligned_cols=119  Identities=25%  Similarity=0.362  Sum_probs=85.8

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch--------hhhh
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF   77 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   77 (156)
                      +..+|+++|++|+|||||+++|.+.... ....++.+.+.....+.+++  ..+.+|||||+..+...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4579999999999999999999987642 12233333445556666676  45889999998653211        1135


Q ss_pred             eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++.+|++++|||++++.++. ...|+..+.....    .+.|+++|+||+|+.++
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~----~~~p~ilv~NK~Dl~~~  130 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLP----AKLPITVVRNKADITGE  130 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSC----TTCCEEEEEECHHHHCC
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcc----cCCCEEEEEECccCCcc
Confidence            78899999999999988766 3467766665432    26899999999999654

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.86  E-value=7.4e-23  Score=143.64  Aligned_cols=126  Identities=21%  Similarity=0.269  Sum_probs=88.4

Q ss_pred             ccceeEEEEEEcCC---------CCChhHHHHHHhc---CCCCCCCCCce-eeEEEEEE--------------EEECCeE
Q 031598            4 RRRTLLKVIILGDS---------GVGKTSLMNQYVN---KKFSNQYKATI-GADFLTKE--------------VQFEDRL   56 (156)
Q Consensus         4 ~~~~~~~i~v~G~~---------~~GKstli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~   56 (156)
                      ...+.+||+++|.+         ++|||||+++|.+   ..+...+.++. +.++....              ...++..
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            34567999999999         9999999999998   44444444443 22211111              1134566


Q ss_pred             EEEEEEe-----------------------CCCcccccchhhhhee---------------------cccEEEEEEECCC
Q 031598           57 FTLQIWD-----------------------TAGQERFQSLGVAFYR---------------------GADCCVLVYDVNS   92 (156)
Q Consensus        57 ~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~l~v~d~~~   92 (156)
                      +.+.+||                       +.|++.+...+..+++                     .+|++++|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            8899999                       6667777777777776                     7999999999999


Q ss_pred             h--hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           93 M--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        93 ~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +  .+|+.+..|+..+.......   +.|+++|+||+|+.++
T Consensus       175 ~~~~s~~~~~~~l~~i~~~~~~~---~~piilV~NK~Dl~~~  213 (255)
T 3c5h_A          175 GMNRNFDDQLKFVSNLYNQLAKT---KKPIVVVLTKCDEGVE  213 (255)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHT---TCCEEEEEECGGGBCH
T ss_pred             CchhhHHHHHHHHHHHHHHhccC---CCCEEEEEEccccccc
Confidence            8  99999999999887653211   6899999999999754

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.86  E-value=2.1e-21  Score=126.60  Aligned_cols=114  Identities=21%  Similarity=0.241  Sum_probs=78.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc-------ccchhhhheec
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRG   80 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~   80 (156)
                      .||+++|++|+|||||+++|.+.... ....+..+.+........++  ..+.+|||||+..       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999987643 12223333344445555566  4789999999876       34455667889


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|++++|||.+++.+...  .++..+...      .+.|+++|+||+|+.+.
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~------~~~p~ilv~nK~Dl~~~  123 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR------KGKPVILVATKVDDPKH  123 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH------HTCCEEEEEECCCSGGG
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh------cCCCEEEEEECcccccc
Confidence            999999999998644332  223233222      16799999999999864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.86  E-value=4.6e-21  Score=126.06  Aligned_cols=113  Identities=12%  Similarity=0.207  Sum_probs=80.2

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc------chhhhhee--
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR--   79 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--   79 (156)
                      .++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||+..+.      .+...+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            58999999999999999999998765443344433333344455555  579999999988764      23345554  


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        80 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .++++++|+|.++.+.   ...|+..+..    .   +.|+++|+||+|+...
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~----~---~~p~ilv~nK~Dl~~~  123 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLME----M---GANLLLALNKMDLAKS  123 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHH----T---TCCEEEEEECHHHHHH
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHh----c---CCCEEEEEEchHhccc
Confidence            7899999999998643   3445555543    1   6799999999999654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.86  E-value=1.3e-21  Score=131.53  Aligned_cols=116  Identities=22%  Similarity=0.283  Sum_probs=78.9

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC----------cccccchhh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV   75 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~   75 (156)
                      ...++|+++|.+|+|||||+++|.+..+.....++.+.+........+.   .+.+|||||          ++.+...+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   97 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence            4569999999999999999999998875544445544444333344433   589999999          666777777


Q ss_pred             hheecc---cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           76 AFYRGA---DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        76 ~~~~~~---~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+++.+   |++++|+|++++.++.... +...+..       .+.|+++|+||+|+.++
T Consensus        98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-------~~~p~i~v~nK~Dl~~~  149 (195)
T 1svi_A           98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-------YGIPVIVIATKADKIPK  149 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-------TTCCEEEEEECGGGSCG
T ss_pred             HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCCh
Confidence            777776   9999999999887766532 1222211       27799999999999875

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.85  E-value=2.9e-20  Score=133.26  Aligned_cols=122  Identities=18%  Similarity=0.213  Sum_probs=83.2

Q ss_pred             CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCccc--------cc
Q 031598            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQ   71 (156)
Q Consensus         1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~   71 (156)
                      |++. .+..+|+++|.+|+|||||+|+|++.++... ..+..+.+........++  .++++|||||...        +.
T Consensus         1 m~~~-~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~   77 (301)
T 1wf3_A            1 MAEK-TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMD   77 (301)
T ss_dssp             --CC-CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHH
T ss_pred             CCCC-ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHH
Confidence            4554 4567899999999999999999999876432 222222222222233333  7899999999765        34


Q ss_pred             chhhhheecccEEEEEEECCChhhHHHHHHHH-HHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWR-EEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        72 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .....+++.+|++++|||++++.+..  ..|. ..+....     .+.|+++|+||+|+.+.
T Consensus        78 ~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-----~~~p~ilV~NK~Dl~~~  132 (301)
T 1wf3_A           78 QEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-----GKVPILLVGNKLDAAKY  132 (301)
T ss_dssp             HHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-----TTSCEEEEEECGGGCSS
T ss_pred             HHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-----CCCCEEEEEECcccCCc
Confidence            45566789999999999999865433  2333 3343322     26899999999999865

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.85  E-value=4.6e-22  Score=152.52  Aligned_cols=120  Identities=27%  Similarity=0.404  Sum_probs=88.3

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEE------E--EECCeEEEEEEEeCCCcccccchhhh
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE------V--QFEDRLFTLQIWDTAGQERFQSLGVA   76 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~i~D~~g~~~~~~~~~~   76 (156)
                      ....+||+++|.+++|||||++++.+..+.....++.+.+.....      +  ..++....+.+|||||++.+......
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            456799999999999999999999999877777777766655432      1  11233578999999999999999999


Q ss_pred             heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++.+|++++|||+++.   +....|...+..+..     +.|+++|+||+|+.+.
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-----~~pvilV~NK~Dl~~~  165 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-----KSPVIVVMNKIDENPS  165 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-----SCCEEEEECCTTTCTT
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-----CCCEEEEEECCCcccc
Confidence            99999999999999876   445667777776643     6799999999999875

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.85  E-value=1.1e-20  Score=126.25  Aligned_cols=116  Identities=12%  Similarity=0.197  Sum_probs=85.9

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc------chhhhhe
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFY   78 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~   78 (156)
                      ..+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++  ..+.+|||||+..+.      ..+..++
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI   81 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence            34679999999999999999999998764433344444555555666665  689999999988764      3455555


Q ss_pred             e--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           79 R--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        79 ~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .  .++++++|+|.++   ++....|...+..       .+.|+++|+||+|+...
T Consensus        82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~  127 (188)
T 2wjg_A           82 INEKPDLVVNIVDATA---LERNLYLTLQLME-------MGANLLLALNKMDLAKS  127 (188)
T ss_dssp             HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT-------TTCCEEEEEECHHHHHH
T ss_pred             hccCCCEEEEEecchh---HHHHHHHHHHHHh-------cCCCEEEEEEhhhcccc
Confidence            4  4899999999876   4455566666543       16799999999999754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.84  E-value=4e-21  Score=134.86  Aligned_cols=112  Identities=20%  Similarity=0.222  Sum_probs=84.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc----------hhhhhe
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----------LGVAFY   78 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~   78 (156)
                      .+|+++|.+|||||||+++|.+........++.+.+.....+.+++  ..+.+|||||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            5899999999999999999998875444455555566666676666  4799999999876653          455566


Q ss_pred             --ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           79 --RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        79 --~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                        +.+|++++|+|+++.++...+..++.       ..   +.|+++|+||+|+.+.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~-------~~---~~pvilv~NK~Dl~~~  125 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQLF-------EL---GKPVVVALNMMDIAEH  125 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHHT-------TS---CSCEEEEEECHHHHHH
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHHH-------Hc---CCCEEEEEEChhcCCc
Confidence              88999999999999765544332222       11   7899999999999765

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.84  E-value=4.6e-20  Score=132.65  Aligned_cols=121  Identities=21%  Similarity=0.167  Sum_probs=88.3

Q ss_pred             cccceeEEEEEEcCCCCChhHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc----------
Q 031598            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----------   71 (156)
Q Consensus         3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------   71 (156)
                      +...+.-.|+++|.+|+|||||+++|.+.++... ..+..+..........+ ...++.+|||||+....          
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence            3456678999999999999999999999886532 22222222333333444 13789999999985544          


Q ss_pred             chhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        72 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      .....+++.+|++++|+|++++.++.....|+..+..       .+.|+++|+||+|+.+
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-------~~~pvilV~NK~Dl~~  136 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-------LNKPVIVVINKIDKIG  136 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-------GCCCEEEEEECGGGSS
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-------cCCCEEEEEECccCCC
Confidence            5556778899999999999998887776666666543       1679999999999983

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.84  E-value=1.2e-21  Score=131.01  Aligned_cols=115  Identities=24%  Similarity=0.335  Sum_probs=81.6

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC-----------cccccchhhhh
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------QERFQSLGVAF   77 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~   77 (156)
                      ++|+++|++|+|||||+++|.+..+...+.++.+..  .......    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            689999999999999999999988765555544332  2223333    588999999           56667777777


Q ss_pred             eec-ccEEEEEEECCChhhHHHH-HHHHHH--------HHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           78 YRG-ADCCVLVYDVNSMKSFDNL-NNWREE--------FLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        78 ~~~-~~~~l~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++. +++++++|++.+..++..+ ..|...        +......   .+.|+++|+||+|+.+.
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  137 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKN  137 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh---cCCceEEEeehHhccCc
Confidence            776 7766666666677777765 455432        2222221   27899999999999876

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.84  E-value=1.1e-20  Score=133.87  Aligned_cols=114  Identities=19%  Similarity=0.246  Sum_probs=83.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc----------hhhh
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----------LGVA   76 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~   76 (156)
                      +.++|+++|.+|+|||||+++|.+........++.+.+.....+...+  ..+.+|||||+..+..          ....
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence            358999999999999999999998875444445555555556666555  4688999999876652          2222


Q ss_pred             he--ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 FY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 ~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++  +.+|++++|+|+++.+....+..++..+          +.|+++|+||+|+.+.
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~----------~~p~ivv~NK~Dl~~~  127 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYLTLQLLEL----------GIPCIVALNMLDIAEK  127 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH----------TCCEEEEEECHHHHHH
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHHHHHHHhc----------CCCEEEEEECccchhh
Confidence            33  6899999999999876554444333332          6799999999999764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.84  E-value=2.1e-20  Score=131.31  Aligned_cols=115  Identities=20%  Similarity=0.180  Sum_probs=83.9

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch------hhhhe-
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY-   78 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~-   78 (156)
                      .+.++|+++|.+|+|||||+++|.+..+.....++.+.+.....+...+  ..+.+|||||+..+...      ...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            4578999999999999999999998775433344444444444555544  68999999998776542      24454 


Q ss_pred             -ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           79 -RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        79 -~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                       ..+|++++|+|+++.++..   .|...+...       +.|+++|+||+|+.+.
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~-------~~pvilv~NK~Dl~~~  125 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL---YLLLEILEM-------EKKVILAMTAIDEAKK  125 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH---HHHHHHHTT-------TCCEEEEEECHHHHHH
T ss_pred             hcCCCEEEEEeCCCchhhHH---HHHHHHHhc-------CCCEEEEEECcCCCCc
Confidence             5799999999999876433   344444321       6899999999999754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.83  E-value=5e-20  Score=129.70  Aligned_cols=123  Identities=15%  Similarity=0.102  Sum_probs=83.8

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhhee-----
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR-----   79 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-----   79 (156)
                      .+.++|+++|.+|+|||||+++|.+...... ..+..+.......+..++  ..+++|||||+..+......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            4579999999999999999999998875221 122222333344445555  58999999998877655444443     


Q ss_pred             ----cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           80 ----GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        80 ----~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                          .+|++++|++.+..........|+..+.......  ...|+++|+||+|+...
T Consensus       112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKE--IWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECTTCCCS
T ss_pred             HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchh--hhcCEEEEEeCcccCCC
Confidence                7899999999876542222246666666554321  12489999999999644

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.83  E-value=7.8e-21  Score=127.48  Aligned_cols=114  Identities=21%  Similarity=0.289  Sum_probs=79.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC----------cccccchhh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV   75 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~   75 (156)
                      ...++|+++|++|+|||||+++|.+.... ...++.+.+........+.   .+.+|||||          ++.+...+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   96 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE   96 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence            44589999999999999999999988733 2334443333333333332   578999999          556666666


Q ss_pred             hheecc---cEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           76 AFYRGA---DCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        76 ~~~~~~---~~~l~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      .+++.+   +++++|+|.+++.+...  +..|+...          +.|+++|+||+|+.+++
T Consensus        97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~----------~~p~i~v~nK~Dl~~~~  149 (195)
T 3pqc_A           97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL----------NIPFTIVLTKMDKVKMS  149 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TCCEEEEEECGGGSCGG
T ss_pred             HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc----------CCCEEEEEEChhcCChH
Confidence            676665   99999999987643332  23333322          67999999999998653

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.82  E-value=2.2e-19  Score=124.72  Aligned_cols=122  Identities=17%  Similarity=0.212  Sum_probs=77.6

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEECCeEEEEEEEeCCCcc-----------ccc
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA--TIGADFLTKEVQFEDRLFTLQIWDTAGQE-----------RFQ   71 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----------~~~   71 (156)
                      ....++|+++|.+|+|||||+++|.+........+  +.+..........++  ..+.+|||||..           .+.
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence            34569999999999999999999999887554443  333344444455555  578999999933           334


Q ss_pred             chhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        72 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+...++.+|++++|+|+++....  ...++..+...+...  ...|+++|+||+|+.+.
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~  160 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGER--ARSFMILIFTRKDDLGD  160 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHH--HGGGEEEEEECGGGC--
T ss_pred             HHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhh--ccceEEEEEeCCccCCc
Confidence            4444455678999999998764331  123333333222110  04599999999999765

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.82  E-value=6.9e-20  Score=129.52  Aligned_cols=115  Identities=17%  Similarity=0.183  Sum_probs=84.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc------hhhhhe--
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS------LGVAFY--   78 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--   78 (156)
                      +.++|+++|++|||||||+++|.+..+.....++.+.+.....+...+  ..+.+|||||+..+..      ....++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            458999999999999999999998876444455555666666666666  4699999999887655      455555  


Q ss_pred             ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        79 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+|++++|+|.++.+.   ...+...+....      ..|+++|+||+|+.+.
T Consensus        80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~~------~~p~ilv~NK~Dl~~~  124 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMR---NLFLTLELFEME------VKNIILVLNKFDLLKK  124 (271)
T ss_dssp             TCCSEEEEEEEGGGHHH---HHHHHHHHHHTT------CCSEEEEEECHHHHHH
T ss_pred             cCCcEEEEEecCCcchh---hHHHHHHHHhcC------CCCEEEEEEChhcCcc
Confidence            67999999999998642   223333343221      3799999999998654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.81  E-value=3e-20  Score=127.44  Aligned_cols=119  Identities=17%  Similarity=0.076  Sum_probs=78.3

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEeCCCc----------ccccchh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQ----------ERFQSLG   74 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~----------~~~~~~~   74 (156)
                      ...++|+++|.+|+|||||+++|.+...........+.+......... .....+.+|||||.          +.+....
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  106 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL  106 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence            346899999999999999999999886321122222222222233333 33367999999994          3334455


Q ss_pred             hhheec---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           75 VAFYRG---ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        75 ~~~~~~---~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+++.   +|++++|+|.+++.+.. ...++..+..       .+.|+++|+||+|+...
T Consensus       107 ~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~-------~~~p~i~v~nK~Dl~~~  159 (223)
T 4dhe_A          107 SSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP-------TGKPIHSLLTKCDKLTR  159 (223)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG-------GCCCEEEEEECGGGSCH
T ss_pred             HHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh-------cCCCEEEEEeccccCCh
Confidence            555555   78899999999754322 2333443332       16799999999999865

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.81  E-value=6.1e-20  Score=129.81  Aligned_cols=113  Identities=19%  Similarity=0.235  Sum_probs=80.2

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc------chhhhhee-
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR-   79 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-   79 (156)
                      ..++|+++|++|||||||+++|.+........++.  +.......+.. ...+.+|||||+..+.      .....++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~--tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGV--TVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCC--CCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCC--cEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            35799999999999999999999876433333332  22223333444 5679999999988765      34455564 


Q ss_pred             -cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           80 -GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        80 -~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                       .+|++++|||+++.++.   ..|...+..       .+.|+++|+||+|+...
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~-------~~~p~ilv~NK~Dl~~~  122 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE-------TGIPVTIALNMIDVLDG  122 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH-------TCSCEEEEEECHHHHHH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh-------cCCCEEEEEEChhhCCc
Confidence             59999999999986543   344444443       17899999999999654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.80  E-value=1.8e-19  Score=136.05  Aligned_cols=118  Identities=19%  Similarity=0.244  Sum_probs=70.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchh--------hhh
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------VAF   77 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~   77 (156)
                      ..++|+++|.+|+|||||+|+|.+.+.. ....++.+.+.....+.+++  ..+.+|||||+..+...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            3588999999999999999999987532 22334444455556666666  679999999987655433        346


Q ss_pred             eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++.+|++++|||.+++.++..+..+.. +...+.     +.|+++|+||+|+.+.
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~-~l~~l~-----~~piIvV~NK~Dl~~~  358 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRE-LKAAHP-----AAKFLTVANKLDRAAN  358 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHH-HHHHCT-----TSEEEEEEECTTSCTT
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHH-HHHhcC-----CCCEEEEEECcCCCCc
Confidence            788999999999999887754323222 333333     6799999999999876

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.79  E-value=1.8e-18  Score=121.49  Aligned_cols=122  Identities=19%  Similarity=0.232  Sum_probs=75.9

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCC-CCCCCCc-eeeEEEEEEEEECCeEEEEEEEeCCCcccccchh--------
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKAT-IGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------   74 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------   74 (156)
                      ..+.++|+++|.+|+|||||+++|.+... .....++ .+.+.........+  ..+.+|||||...+....        
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            34569999999999999999999998773 3222232 23333344444555  579999999976553221        


Q ss_pred             ---hhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEe-cCCCCCC
Q 031598           75 ---VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN-KIDVDGG  132 (156)
Q Consensus        75 ---~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n-K~Dl~~~  132 (156)
                         ..+++.+|++++|||+.+.....  ..++..+...+...  ...|+++|+| |+|+.+.
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~  154 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQD--QQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG  154 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHH--HHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHH--HHHHHHHHHHhCch--hhccEEEEEEcccccCCc
Confidence               22567899999999998622211  12222333332211  0346666666 9999854

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.79  E-value=8.9e-19  Score=123.78  Aligned_cols=122  Identities=17%  Similarity=0.157  Sum_probs=79.8

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC-CCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhh-------h-
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV-------A-   76 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~-   76 (156)
                      ...++|+++|.+|+|||||+++|++....... .+..+...........+  ..+.+|||||...+.....       . 
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            35799999999999999999999987753211 12222222223333344  6799999999876543222       1 


Q ss_pred             -heecccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 -FYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 -~~~~~~~~l~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                       ..+.+|++++|||.+... +.. ...|+..+...+...  ...|+++|+||+|+...
T Consensus       115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~--~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCCG
T ss_pred             hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcc--cccCEEEEEECcccCCc
Confidence             124689999999987532 332 246666666554321  02699999999999765

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.79  E-value=5.4e-19  Score=132.57  Aligned_cols=122  Identities=19%  Similarity=0.214  Sum_probs=82.2

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCC-------------------------------CCCCCCceeeEEEEEEEEEC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQFE   53 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   53 (156)
                      .+..++|+++|.+++|||||+++|+...-                               ..+..+..+.+.....+..+
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            45679999999999999999999954311                               11112333344434444433


Q ss_pred             CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhh---HHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCC
Q 031598           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---FDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDV  129 (156)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl  129 (156)
                        ...+++|||||++.|...+...++.+|++++|+|+++...   |+......+.+..... .   +.| +++|+||+|+
T Consensus        94 --~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~---~v~~iIvviNK~Dl  167 (439)
T 3j2k_7           94 --KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-A---GVKHLIVLINKMDD  167 (439)
T ss_pred             --CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-c---CCCeEEEEeecCCC
Confidence              4689999999999999888899999999999999998642   1111111222111111 1   566 9999999999


Q ss_pred             CCC
Q 031598          130 DGG  132 (156)
Q Consensus       130 ~~~  132 (156)
                      ...
T Consensus       168 ~~~  170 (439)
T 3j2k_7          168 PTV  170 (439)
T ss_pred             ccc
Confidence            653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.78  E-value=1e-19  Score=136.48  Aligned_cols=116  Identities=19%  Similarity=0.203  Sum_probs=81.4

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCc----------ccccchhh
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----------ERFQSLGV   75 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~   75 (156)
                      ..++|+++|.+++|||||+++|.+.... ....++.+.+.....+..++  ..+.+|||||+          +.+.....
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHHH
Confidence            5689999999999999999999987643 22233333444444556666  45899999997          33333322


Q ss_pred             -hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           76 -AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        76 -~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                       .+++.+|++++|||++++.+++.. .|...+..       .+.|+++|+||+|+.++
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~-------~~~~iiiv~NK~Dl~~~  301 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE-------AGKAVVIVVNKWDAVDK  301 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-------TTCEEEEEEECGGGSCC
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH-------cCCcEEEEEECccCCCc
Confidence             467889999999999998887764 45554432       17899999999999875

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.78  E-value=1.4e-18  Score=130.32  Aligned_cols=113  Identities=23%  Similarity=0.325  Sum_probs=74.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc---------ccchhhhhe
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFY   78 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~   78 (156)
                      .+|+++|.+++|||||+|+|.+.+.. ....+..+.+.....+...+  ..+.+|||||.+.         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999987643 22233443444455556666  4689999999653         234456678


Q ss_pred             ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        79 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      +.+|++++|||+.++.+...  .+...+.+..      +.|+++|+||+|+.+
T Consensus        80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~~------~~p~ilv~NK~D~~~  124 (439)
T 1mky_A           80 READLVLFVVDGKRGITKED--ESLADFLRKS------TVDTILVANKAENLR  124 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHH--HHHHHHHHHH------TCCEEEEEESCCSHH
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHHc------CCCEEEEEeCCCCcc
Confidence            99999999999987654332  2222222221      679999999999863

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.78  E-value=2.6e-19  Score=133.35  Aligned_cols=118  Identities=28%  Similarity=0.342  Sum_probs=78.6

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch-------hhh
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-------GVA   76 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~   76 (156)
                      ....++|+++|..++|||||+++|.+..+. ....+..+.+.....+.+.+. ..+.+|||||+..+...       ...
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence            345689999999999999999999988753 222233333444455555554 27999999998876544       344


Q ss_pred             heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      ++..+|++++|||+.....   ...|...+...       +.|+++|+||+|+.+..
T Consensus       110 ~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~-------~~piIvV~NK~Dl~~~~  156 (423)
T 3qq5_A          110 VFYRADCGILVTDSAPTPY---EDDVVNLFKEM-------EIPFVVVVNKIDVLGEK  156 (423)
T ss_dssp             HHTSCSEEEEECSSSCCHH---HHHHHHHHHHT-------TCCEEEECCCCTTTTCC
T ss_pred             HHhcCCEEEEEEeCCChHH---HHHHHHHHHhc-------CCCEEEEEeCcCCCCcc
Confidence            6788999999999943322   34455544432       67999999999998763

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.78  E-value=1.3e-18  Score=134.35  Aligned_cols=118  Identities=19%  Similarity=0.267  Sum_probs=81.5

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCC--CCC-----C------CCCceeeEEEEE--EEEE---CCeEEEEEEEeCCCcc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKK--FSN-----Q------YKATIGADFLTK--EVQF---EDRLFTLQIWDTAGQE   68 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~-----~------~~~~~~~~~~~~--~~~~---~~~~~~~~i~D~~g~~   68 (156)
                      +.+||+++|..++|||||+++|+...  ...     .      .....+.+....  .+.+   ++..+.+++|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            56899999999999999999998531  100     0      001112222221  2222   4556899999999999


Q ss_pred             cccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        69 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+...+...++.+|++++|||+++..+++....|.....   .     ++|+++|+||+|+.+.
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~-----~ipiIvViNKiDl~~a  138 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---M-----DLEVVPVLNKIDLPAA  138 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---T-----TCEEEEEEECTTSTTC
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---C-----CCCEEEeeeccCcccc
Confidence            999999999999999999999999877777766665542   1     7799999999999875

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.77  E-value=3.3e-18  Score=131.98  Aligned_cols=119  Identities=15%  Similarity=0.246  Sum_probs=84.3

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCC--CCCC-----C------CCceeeEE----EEEEEEE-CCeEEEEEEEeCCCc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKK--FSNQ-----Y------KATIGADF----LTKEVQF-EDRLFTLQIWDTAGQ   67 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~-----~------~~~~~~~~----~~~~~~~-~~~~~~~~i~D~~g~   67 (156)
                      .+.++|+++|..++|||||+++|+...  ....     .      ....+.+.    ....+.. ++..+.+++|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            457899999999999999999997521  1000     0      00011111    1111221 455689999999999


Q ss_pred             ccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        68 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+...+...++.+|++++|||+++..+.+....|.....   .     ++|+++|+||+|+.+.
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~-----~ipiIvviNKiDl~~a  140 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---Q-----DLVIIPVINKIDLPSA  140 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---T-----TCEEEEEEECTTSTTC
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---C-----CCCEEEEEeccCcccc
Confidence            9999999999999999999999999888777776665442   1     7899999999999875

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.77  E-value=1.3e-19  Score=137.51  Aligned_cols=120  Identities=16%  Similarity=0.169  Sum_probs=78.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCC-------------------------------CCCCCCceeeEEEEEEEEECC
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQFED   54 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   54 (156)
                      +..+||+++|.+++|||||+++|++...                               .....+..+.+.....+  ..
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~--~~  108 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--ST  108 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEE--EC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEE--ec
Confidence            4569999999999999999999975411                               01111111222222223  33


Q ss_pred             eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHH-----HHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDN-----LNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (156)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  129 (156)
                      ....+.+|||||++.+.......++.+|++++|||++++.++..     .......+.....     ..|+++|+||+|+
T Consensus       109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-----~~~iIvviNK~Dl  183 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-----IHNLIIAMNKMDN  183 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT-----CCCEEEEEECGGG
T ss_pred             CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC-----CCcEEEEEECcCc
Confidence            44789999999999999999999999999999999998754332     1112222222221     2469999999999


Q ss_pred             CCC
Q 031598          130 DGG  132 (156)
Q Consensus       130 ~~~  132 (156)
                      .+.
T Consensus       184 ~~~  186 (483)
T 3p26_A          184 VDW  186 (483)
T ss_dssp             GTT
T ss_pred             ccc
Confidence            874

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.77  E-value=8.1e-18  Score=123.22  Aligned_cols=120  Identities=22%  Similarity=0.225  Sum_probs=85.4

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc---------chhhh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ---------SLGVA   76 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~   76 (156)
                      ...++|+++|.+|+|||||+++|.+........+..+...........+  ..+.+|||||.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            4568999999999999999999998764221122222233333343443  679999999975432         11123


Q ss_pred             heecccEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 FYRGADCCVLVYDVNSMK--SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 ~~~~~~~~l~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ....+|++++|+|++++.  ++.....|+..+.....     +.|+++|+||+|+.+.
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-----~~piilV~NK~Dl~~~  295 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-----DLPFLVVINKIDVADE  295 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-----TSCEEEEECCTTTCCH
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-----CCCEEEEEECcccCCh
Confidence            345689999999999876  67777888888876553     6799999999999865

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.77  E-value=4.5e-19  Score=132.96  Aligned_cols=115  Identities=19%  Similarity=0.191  Sum_probs=72.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccchhhhheec
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVAFYRG   80 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~   80 (156)
                      .+|+++|.+|+|||||+++|.+..... ...+.+.+...........+..+.+|||||+.        .+...+..+++.
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            689999999999999999999876532 22333343333333334344679999999975        456667778899


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|++++|+|+.++.++..  .++..+.   ..   .+.|+++|+||+|+.+.
T Consensus        83 ad~il~vvD~~~~~~~~d--~~~~~~l---~~---~~~pvilv~NK~D~~~~  126 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAAD--EEVAKIL---YR---TKKPVVLAVNKLDNTEM  126 (436)
T ss_dssp             CSEEEEEEETTTCSCHHH--HHHHHHH---TT---CCSCEEEEEECCCC---
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHH---HH---cCCCEEEEEECccCccc
Confidence            999999999998766543  2233322   22   27799999999999864

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.77  E-value=7.4e-19  Score=124.44  Aligned_cols=120  Identities=17%  Similarity=0.218  Sum_probs=72.5

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC--------CCceeeEEEEEEEEECCeEEEEEEEeCCCccc-------
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------   69 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------   69 (156)
                      +...++|+++|.+|+|||||+|+|++.......        .++.+.+.....+..++..+.+++|||||...       
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            345699999999999999999998876543322        34444444444444444456999999999632       


Q ss_pred             ccchh-------hhhee-------------cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598           70 FQSLG-------VAFYR-------------GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (156)
Q Consensus        70 ~~~~~-------~~~~~-------------~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  129 (156)
                      +..+.       ..++.             .+|+++++++.+.......-..++..+    ..    +.|+++|+||+|+
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l----~~----~~pvi~V~nK~D~  156 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL----HE----KVNIIPLIAKADT  156 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH----TT----TSCEEEEESSGGG
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH----hc----cCCEEEEEeccCC
Confidence            22222       22222             267899999777632212222333333    22    6799999999999


Q ss_pred             CCC
Q 031598          130 DGG  132 (156)
Q Consensus       130 ~~~  132 (156)
                      ...
T Consensus       157 ~~~  159 (274)
T 3t5d_A          157 LTP  159 (274)
T ss_dssp             SCH
T ss_pred             CCH
Confidence            754

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.76  E-value=1.1e-17  Score=124.24  Aligned_cols=122  Identities=16%  Similarity=0.097  Sum_probs=86.3

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEE-------EE---------EE---CCeEEEEEEEeC
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK-------EV---------QF---EDRLFTLQIWDT   64 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~i~D~   64 (156)
                      ..++.++|+++|.+++|||||+++|.+........ ....+....       ..         ..   ......+++|||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt   82 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG-YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA   82 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSE-EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccC-ccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence            45667999999999999999999999765332111 000000000       00         00   112368999999


Q ss_pred             CCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        65 ~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||++.+.......++.+|++++|+|++++.++....+++..+... .     ..|+++|+||+|+.+.
T Consensus        83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~-----~~~iivviNK~Dl~~~  144 (403)
T 3sjy_A           83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-G-----VKNLIIVQNKVDVVSK  144 (403)
T ss_dssp             CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-T-----CCCEEEEEECGGGSCH
T ss_pred             CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-C-----CCCEEEEEECccccch
Confidence            999999999999999999999999999987556666666544332 2     3489999999999875

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.76  E-value=3.5e-19  Score=134.23  Aligned_cols=119  Identities=18%  Similarity=0.166  Sum_probs=76.7

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC--------cccccchhhh
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG--------QERFQSLGVA   76 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~   76 (156)
                      .....+|+++|.+|+|||||+++|.+.+... ...+.+.+..............+.+|||||        +..+...+..
T Consensus        20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~   98 (456)
T 4dcu_A           20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI   98 (456)
T ss_dssp             ---CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence            4456899999999999999999999876542 223334444444444455556899999999        6667777888


Q ss_pred             heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++.+|++++|+|..++....  ..++..+.   ..   .+.|+++|+||+|+.+.
T Consensus        99 ~~~~ad~il~VvD~~~~~~~~--d~~l~~~l---~~---~~~pvilV~NK~D~~~~  146 (456)
T 4dcu_A           99 AMDEADVIIFMVNGREGVTAA--DEEVAKIL---YR---TKKPVVLAVNKLDNTEM  146 (456)
T ss_dssp             HHHHCSEEEEEEESSSCSCHH--HHHHHHHH---TT---CCSCEEEEEECC-----
T ss_pred             hHhhCCEEEEEEeCCCCCChH--HHHHHHHH---HH---cCCCEEEEEECccchhh
Confidence            889999999999988744322  23333332   22   27899999999999754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.76  E-value=3.8e-18  Score=129.24  Aligned_cols=115  Identities=19%  Similarity=0.237  Sum_probs=80.2

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCC-------CCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhh
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK-------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF   77 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   77 (156)
                      ..+.++|+++|..++|||||+++|.+..       ......+..+.+.....+.+++  ..+++|||||++.+.......
T Consensus        16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~   93 (482)
T 1wb1_A           16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA   93 (482)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence            3457999999999999999999999776       2222222233333333444555  689999999999998888889


Q ss_pred             eecccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           78 YRGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        78 ~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +..+|++++|+|+++   +.+.+.+.    .+ ...      ++|+++|+||+|+.++
T Consensus        94 ~~~aD~~ilVvda~~g~~~qt~e~l~----~~-~~~------~ip~IvviNK~Dl~~~  140 (482)
T 1wb1_A           94 ADIIDLALIVVDAKEGPKTQTGEHML----IL-DHF------NIPIIVVITKSDNAGT  140 (482)
T ss_dssp             TTSCCEEEEEEETTTCSCHHHHHHHH----HH-HHT------TCCBCEEEECTTSSCH
T ss_pred             HhhCCEEEEEEecCCCccHHHHHHHH----HH-HHc------CCCEEEEEECCCcccc
Confidence            999999999999998   33333221    11 211      6788999999999864

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.75  E-value=1.8e-18  Score=130.72  Aligned_cols=113  Identities=25%  Similarity=0.328  Sum_probs=83.1

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc-cccc--------hhhhh
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-RFQS--------LGVAF   77 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~   77 (156)
                      .++|+++|.+++|||||+|+|.+.+.. ....+..+.+.....+.+++  ..+.+|||||.. .+..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            489999999999999999999987532 23334444455556666666  568999999987 5432        23456


Q ss_pred             eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++.+|++++|||++++.+++... +++    .+.     +.|+++|+||+|+.++
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~----~l~-----~~piivV~NK~DL~~~  365 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILE----RIK-----NKRYLVVINKVDVVEK  365 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHH----HHT-----TSSEEEEEEECSSCCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHH----Hhc-----CCCEEEEEECcccccc
Confidence            78999999999999987766532 222    222     6799999999999753

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.75  E-value=2.4e-19  Score=134.41  Aligned_cols=124  Identities=15%  Similarity=0.234  Sum_probs=81.1

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcC--CCCCC-----------------------------CCCceeeEEEEEEEEECC
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQ-----------------------------YKATIGADFLTKEVQFED   54 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   54 (156)
                      ++.++|+++|..++|||||+++|+..  .+...                             ..+..+.+.....+  ..
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~--~~   81 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF--ET   81 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE--EC
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE--ec
Confidence            45699999999999999999999864  22110                             01112222222223  33


Q ss_pred             eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-cEEEEEecCCCCCC
Q 031598           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNF-PFVVLGNKIDVDGG  132 (156)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~~~  132 (156)
                      ....+++|||||+..+...+...++.+|++++|||+++ .+|+....|..+..++.......+. |+++|+||+|+.+.
T Consensus        82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~  159 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP  159 (435)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence            34689999999999999888999999999999999998 6676544332222221110000133 68999999999873

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.75  E-value=1.2e-18  Score=126.70  Aligned_cols=121  Identities=19%  Similarity=0.166  Sum_probs=84.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc----ccchhhhhe---ecc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAFY---RGA   81 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~~   81 (156)
                      .+|+++|.+++|||||+++|.+.+......+..+.......+.+++. ..+.+|||||..+    +..+...++   +.+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            36889999999999999999987642111111112222333444432 4799999999543    233334444   459


Q ss_pred             cEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           82 DCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        82 ~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++++|||+++   +.+++.+..|...+..+...  ..+.|+++|+||+|+.+.
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~--l~~~p~ilV~NK~Dl~~~  289 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLR--LTERPQIIVANKMDMPEA  289 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSS--TTTSCBCBEEECTTSTTH
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhh--hcCCCEEEEEECccCCCC
Confidence            99999999998   78888888888888765321  237899999999999864

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.75  E-value=8.2e-19  Score=133.97  Aligned_cols=117  Identities=17%  Similarity=0.207  Sum_probs=83.8

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCC------------------CC----CCCCceeeEEEEEEEEECCeEEEEEEEe
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKF------------------SN----QYKATIGADFLTKEVQFEDRLFTLQIWD   63 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D   63 (156)
                      .+..+|+++|.+++|||||+++|+...-                  ..    ...+..+.......+.+.+  +.+++||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD   88 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD   88 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence            4578999999999999999999962110                  00    0001111112223344444  7899999


Q ss_pred             CCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||+..+...+..+++.+|++++|+|+++....+....|.. +.   . .   ++|+++|+||+|+...
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~---~-~---~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CR---L-R---HTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HH---T-T---TCCEEEEEECTTSCCS
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HH---H-c---CCCEEEEEeCCCCccc
Confidence            99999999999999999999999999999776666544432 22   1 1   7899999999999765

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.75  E-value=2.3e-19  Score=135.80  Aligned_cols=117  Identities=24%  Similarity=0.237  Sum_probs=81.2

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+..+|+++|..++|||||+++|.+..+.....+..+.+.....+..++  ..+++|||||++.|..++...+..+|+++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            3568899999999999999999986544332222222222122222233  47899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||+++....+....+ ..+.   .    .+.|+++++||+|+.+.
T Consensus        80 LVVda~~g~~~qT~e~l-~~~~---~----~~vPiIVviNKiDl~~~  118 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEAI-QHAK---A----AQVPVVVAVNKIDKPEA  118 (501)
T ss_dssp             EEEETTTBSCTTTHHHH-HHHH---H----TTCCEEEEEECSSSSTT
T ss_pred             EEeecccCccHHHHHHH-HHHH---h----cCceEEEEEEecccccc
Confidence            99999884322222111 1111   1    17899999999999864

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.75  E-value=1.7e-18  Score=130.39  Aligned_cols=114  Identities=25%  Similarity=0.281  Sum_probs=74.8

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchh--------hhh
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------VAF   77 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~   77 (156)
                      ..++|+++|.+|+|||||+|+|.+.+.. ....++.+.+.....+.+++  ..+.+|||||...+...+        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            3579999999999999999999976432 22234444444445556666  568999999976554332        235


Q ss_pred             eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++.+|++++|||.+++.+... ..++..+    .     ..|+++|+||+|+.+.
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~-----~~piivV~NK~Dl~~~  345 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQV----K-----HRPLILVMNKIDLVEK  345 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHH----T-----TSCEEEEEECTTSSCG
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhc----c-----CCcEEEEEECCCCCcc
Confidence            688999999999999766544 3344433    2     4699999999999875

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.74  E-value=1.2e-17  Score=124.32  Aligned_cols=119  Identities=18%  Similarity=0.188  Sum_probs=79.0

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCC---CCCCCCC--ceeeEEEEEEEEE-------------C--C----eEEEE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK---FSNQYKA--TIGADFLTKEVQF-------------E--D----RLFTL   59 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~   59 (156)
                      .++..++|+++|..++|||||+++|.+..   +.....+  +....+....+..             +  +    ....+
T Consensus         4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   83 (408)
T 1s0u_A            4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV   83 (408)
T ss_dssp             -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence            45567999999999999999999998543   2222222  3322222222211             1  1    13689


Q ss_pred             EEEeCCCcccccchhhhheecccEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           60 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM----KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        60 ~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||||++.+.......+..+|++++|+|++++    .+++.+.    .+ ..+.     ..|+++|+||+|+.+.
T Consensus        84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~-~~l~-----~~~iivv~NK~Dl~~~  150 (408)
T 1s0u_A           84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----AL-EILG-----IDKIIIVQNKIDLVDE  150 (408)
T ss_dssp             EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HH-HHTT-----CCCEEEEEECTTSSCT
T ss_pred             EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HH-HHcC-----CCeEEEEEEccCCCCH
Confidence            9999999999888877788889999999999964    3333322    22 2222     3489999999999875

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.74  E-value=4.7e-18  Score=129.88  Aligned_cols=118  Identities=18%  Similarity=0.276  Sum_probs=80.3

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCC-C-------------------CCCceeeEEE--EEEEEECCeEEEEEEEe
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN-Q-------------------YKATIGADFL--TKEVQFEDRLFTLQIWD   63 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~-------------------~~~~~~~~~~--~~~~~~~~~~~~~~i~D   63 (156)
                      .+.++|+++|.+++|||||+++|....-.- .                   .....+.+..  ...+.+.+  +.+++||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD   88 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD   88 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence            457999999999999999999998632100 0                   0001111111  12233333  7899999


Q ss_pred             CCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      |||+..+......+++.+|++++|+|+++.....     ...+...+...   ++|+++|+||+|+...+
T Consensus        89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-----t~~~~~~~~~~---~ipiivviNK~Dl~~~~  150 (529)
T 2h5e_A           89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-----TRKLMEVTRLR---DTPILTFMNKLDRDIRD  150 (529)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-----HHHHHHHHTTT---TCCEEEEEECTTSCCSC
T ss_pred             CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-----HHHHHHHHHHc---CCCEEEEEcCcCCcccc
Confidence            9999999888889999999999999999864322     22222223322   78999999999998753

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.74  E-value=1.5e-18  Score=130.77  Aligned_cols=117  Identities=19%  Similarity=0.193  Sum_probs=80.2

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC----------cccccchh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLG   74 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~   74 (156)
                      ...++|+++|.+++|||||+++|.+... .....++.+.+.....+..++  ..+++|||||          ++.+....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHHH
Confidence            4568999999999999999999997652 122223333333334455566  4789999999          56665554


Q ss_pred             h-hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           75 V-AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        75 ~-~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      . .+++.+|++++|+|++++.... ...|...+..       .+.|+++|+||+|+.++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~-------~~~~~ilv~NK~Dl~~~  321 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE-------AGKAVVIVVNKWDAVDK  321 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH-------TTCEEEEEEECGGGSCC
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH-------cCCCEEEEEEChhcCCC
Confidence            4 3678899999999999864422 2334443332       16899999999999876

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.74  E-value=3.2e-17  Score=117.46  Aligned_cols=115  Identities=17%  Similarity=0.142  Sum_probs=76.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCcc---------cccchhh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGV   75 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~   75 (156)
                      .+..+|+++|++|+|||||+++|.+...... ..+..+.......+..++  ..+.+|||||..         .+.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            3456899999999999999999998865311 112111122222233333  689999999986         2344456


Q ss_pred             hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        76 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      ..++.+|++++|+|.++ -  .....+......   .   .+.|+++|+||+|+..
T Consensus        84 ~~l~~~D~vl~Vvd~~~-~--~~~~~~i~~~l~---~---~~~P~ilvlNK~D~~~  130 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR-W--TPDDEMVLNKLR---E---GKAPVILAVNKVDNVQ  130 (301)
T ss_dssp             SCCCCEEEEEEEEETTC-C--CHHHHHHHHHHH---S---SSSCEEEEEESTTTCC
T ss_pred             HHHhcCCEEEEEEeCCC-C--CHHHHHHHHHHH---h---cCCCEEEEEECcccCc
Confidence            67889999999999977 2  222223222221   1   1679999999999986

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.74  E-value=3e-18  Score=129.40  Aligned_cols=120  Identities=17%  Similarity=0.225  Sum_probs=68.3

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCC--CCC-----------------------------CCCCceeeEEEEEEEEECC
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKK--FSN-----------------------------QYKATIGADFLTKEVQFED   54 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~   54 (156)
                      +..++|+++|..++|||||+++|+...  +..                             ......+.+.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            457899999999999999999997421  100                             0011111122222333333


Q ss_pred             eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh---hHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCC
Q 031598           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVD  130 (156)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~  130 (156)
                        ..+++|||||++.|.......++.+|++++|||+++..   +|+....+.+.+..... .   ++| +++|+||+|+.
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~---~vp~iivviNK~Dl~  194 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-Q---GINHLVVVINKMDEP  194 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-T---TCSSEEEEEECTTST
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-c---CCCEEEEEEECccCC
Confidence              67999999999999888888889999999999999863   33322223332222111 1   667 99999999997


Q ss_pred             C
Q 031598          131 G  131 (156)
Q Consensus       131 ~  131 (156)
                      +
T Consensus       195 ~  195 (467)
T 1r5b_A          195 S  195 (467)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.74  E-value=4e-17  Score=119.65  Aligned_cols=116  Identities=23%  Similarity=0.177  Sum_probs=76.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc---------ccchhhhheec
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFYRG   80 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~~   80 (156)
                      .|+++|.+|+|||||+++|.+........+..+.+.....+.+++  ..+.+|||+|...         +...+ ..+..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~  257 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY  257 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence            499999999999999999998875332233333334455666777  4689999999521         22222 24678


Q ss_pred             ccEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           81 ADCCVLVYDVNSMK--SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        81 ~~~~l~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|++++|+|++++.  .......|...+... ..   .+.|+++|+||+|+.+.
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~---~~~p~ilV~NK~Dl~~~  307 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQSSFEILREI-GV---SGKPILVTLNKIDKING  307 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TC---CSCCEEEEEECGGGCCS
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHHHHh-Cc---CCCCEEEEEECCCCCCc
Confidence            99999999999876  455454555444333 21   26799999999999864

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.74  E-value=5.1e-20  Score=140.41  Aligned_cols=117  Identities=18%  Similarity=0.191  Sum_probs=85.5

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +..+|+++|.+++|||||+++|.+..+.....++.+.+.....+..++ ...+++|||||++.|..++...++.+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            457899999999999999999987655433344443333333333221 2378999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||+++....+....+ ..+   .. .   +.|+++|+||+|+.+.
T Consensus        82 VVDa~dg~~~qt~e~l-~~~---~~-~---~vPiIVViNKiDl~~~  119 (537)
T 3izy_P           82 VVAADDGVMKQTVESI-QHA---KD-A---HVPIVLAINKCDKAEA  119 (537)
T ss_dssp             ECBSSSCCCHHHHHHH-HHH---HT-T---TCCEEECCBSGGGTTT
T ss_pred             EEECCCCccHHHHHHH-HHH---HH-c---CCcEEEEEeccccccc
Confidence            9999987655443322 222   12 1   7799999999999865

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.73  E-value=6.9e-18  Score=125.15  Aligned_cols=117  Identities=19%  Similarity=0.140  Sum_probs=80.6

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCC-------CCCC-------CCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKK-------FSNQ-------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS   72 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   72 (156)
                      +.++|+++|..++|||||+++|.+..       +...       .....+.+.......+......+++|||||+..|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            46899999999999999999998631       1000       001112222223333433446899999999999888


Q ss_pred             hhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCC
Q 031598           73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDG  131 (156)
Q Consensus        73 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~  131 (156)
                      .....++.+|++++|||+++....+....| ..+. ..      ++| +++|+||+|+.+
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~-~~------~vp~iivviNK~Dl~~  133 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLAR-QI------GVEHVVVYVNKADAVQ  133 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHH-HT------TCCCEEEEEECGGGCS
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHH-Hc------CCCeEEEEEECcccCC
Confidence            888889999999999999986544433222 2222 11      668 789999999985

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.73  E-value=3.9e-17  Score=128.35  Aligned_cols=118  Identities=20%  Similarity=0.248  Sum_probs=85.6

Q ss_pred             cccceeEEEEEEcCCCCChhHHHHHHhcCC--CC------C------------CCCCceeeEEEEEEEEECCeEEEEEEE
Q 031598            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKK--FS------N------------QYKATIGADFLTKEVQFEDRLFTLQIW   62 (156)
Q Consensus         3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~--~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~   62 (156)
                      ....+.++|+++|.+++|||||+++|+...  ..      .            ....+.  ......+...+  +.+++|
T Consensus         7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi--~~~~~~~~~~~--~~i~li   82 (691)
T 1dar_A            7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITI--TAAVTTCFWKD--HRINII   82 (691)
T ss_dssp             CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEETT--EEEEEE
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhccccc--ccceEEEEECC--eEEEEE
Confidence            445678999999999999999999998321  10      0            111111  11122333344  789999


Q ss_pred             eCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           63 DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        63 D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||||+..+...+..+++.+|++++|+|+++..+++....|.. +..    .   ++|+++|+||+|+...
T Consensus        83 DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~---~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----Y---KVPRIAFANKMDKTGA  144 (691)
T ss_dssp             CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----T---TCCEEEEEECTTSTTC
T ss_pred             ECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----c---CCCEEEEEECCCcccC
Confidence            999999999999999999999999999999877776655543 221    1   7899999999999875

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.73  E-value=2.2e-18  Score=126.34  Aligned_cols=117  Identities=18%  Similarity=0.309  Sum_probs=64.1

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCC-CC--------CCceeeEEEEEEEEECCeEEEEEEEeCCCc-------ccc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSN-QY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ERF   70 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~   70 (156)
                      ..++|+++|++|+|||||+++|++..... ..        .++.+...........+....+++|||||.       +.+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            35899999999999999999987654322 11        133333333333344555678999999998       556


Q ss_pred             cchhh-------hheecc-------------cEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598           71 QSLGV-------AFYRGA-------------DCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (156)
Q Consensus        71 ~~~~~-------~~~~~~-------------~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  129 (156)
                      ..++.       .+++.+             |+++++++.. ..++..+. .++..    +.    .++|+++|+||+|+
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~----l~----~~~piIlV~NK~Dl  186 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKA----IH----NKVNIVPVIAKADT  186 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHH----TC----S-SCEEEEEECCSS
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHH----hc----cCCCEEEEEECCCC
Confidence            66655       455433             3455555432 33344433 23332    22    27899999999999


Q ss_pred             CCC
Q 031598          130 DGG  132 (156)
Q Consensus       130 ~~~  132 (156)
                      ...
T Consensus       187 ~~~  189 (361)
T 2qag_A          187 LTL  189 (361)
T ss_dssp             SCH
T ss_pred             CCH
Confidence            865

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.73  E-value=7.2e-18  Score=121.57  Aligned_cols=80  Identities=9%  Similarity=0.118  Sum_probs=63.4

Q ss_pred             EEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECC----------ChhhHHHHHHHHHHHHHhcCCCCCCC
Q 031598           48 KEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------SMKSFDNLNNWREEFLIQASPSDPDN  117 (156)
Q Consensus        48 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (156)
                      ..+..++  +.+++|||+|++.++..|..+++.++++++|||++          +..++.+...|+..+...   ....+
T Consensus       160 ~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~---~~~~~  234 (327)
T 3ohm_A          160 YPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY---PWFQN  234 (327)
T ss_dssp             EEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS---GGGTT
T ss_pred             EEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh---hccCC
Confidence            3344454  78999999999999999999999999999999655          566777776677666532   22337


Q ss_pred             CcEEEEEecCCCCCC
Q 031598          118 FPFVVLGNKIDVDGG  132 (156)
Q Consensus       118 ~p~ilv~nK~Dl~~~  132 (156)
                      +|+++++||+|+.++
T Consensus       235 ~~iiL~~NK~DL~~~  249 (327)
T 3ohm_A          235 SSVILFLNKKDLLEE  249 (327)
T ss_dssp             CEEEEEEECHHHHHH
T ss_pred             ceEEEEEECchhhhh
Confidence            899999999999764

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.73  E-value=3.8e-17  Score=122.45  Aligned_cols=119  Identities=18%  Similarity=0.184  Sum_probs=79.4

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCC---CCC---------CCC---------------------ceeeEEEEEEEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF---SNQ---------YKA---------------------TIGADFLTKEVQ   51 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~---------~~~---------------------~~~~~~~~~~~~   51 (156)
                      .+..++|+++|..++|||||+++|++...   ...         ...                     ..+.+.....+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            34569999999999999999999985531   000         000                     111111122222


Q ss_pred             ECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                        .....+++|||||++.|...+...++.+|++++|||+++....+. .+++..+ ....     ..|+++|+||+|+.+
T Consensus       101 --~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~-~~~~-----~~~iIvviNK~Dl~~  171 (434)
T 1zun_B          101 --TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIA-SLLG-----IKHIVVAINKMDLNG  171 (434)
T ss_dssp             --CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHH-HHTT-----CCEEEEEEECTTTTT
T ss_pred             --cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHH-HHcC-----CCeEEEEEEcCcCCc
Confidence              233679999999999998888888999999999999998653332 2333322 2221     236999999999986


Q ss_pred             C
Q 031598          132 G  132 (156)
Q Consensus       132 ~  132 (156)
                      .
T Consensus       172 ~  172 (434)
T 1zun_B          172 F  172 (434)
T ss_dssp             S
T ss_pred             c
Confidence            4

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.72  E-value=9e-18  Score=134.36  Aligned_cols=119  Identities=19%  Similarity=0.240  Sum_probs=86.8

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCC------------CCC------CCCCceeeEEEEEEEE------------ECC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK------------FSN------QYKATIGADFLTKEVQ------------FED   54 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~------------~~~------~~~~~~~~~~~~~~~~------------~~~   54 (156)
                      ..+.+||+++|..++|||||+++|+...            +.+      ....+.........+.            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            4567899999999999999999998541            100      0111221222222222            133


Q ss_pred             eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      ..+.+++|||||+.+|...+..+++.+|++++|||+.+..+++....|.....        .++|+++|+||+|+..
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--------~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--------ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--------TTCEEEEEEECHHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--------cCCCeEEEEECCCcch
Confidence            46899999999999999999999999999999999999888877655554331        1679999999999973

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.72  E-value=4.2e-17  Score=121.42  Aligned_cols=119  Identities=19%  Similarity=0.223  Sum_probs=80.8

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCC---CCCCCC--ceeeEEEEEEEEE-------------C--C----eEEEE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF---SNQYKA--TIGADFLTKEVQF-------------E--D----RLFTL   59 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~   59 (156)
                      .++..++|+++|..++|||||+++|.+...   .....+  +....+....+..             +  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            356679999999999999999999985432   222222  3322222222211             0  1    13689


Q ss_pred             EEEeCCCcccccchhhhheecccEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           60 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM----KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        60 ~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||||++.|.......+..+|++++|+|+++.    .+.+.+.    .+. .+.     ..|+++|+||+|+.+.
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~-~~~-----~~~iivviNK~Dl~~~  152 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQ-IIG-----QKNIIIAQNKIELVDK  152 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHH-HHT-----CCCEEEEEECGGGSCH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHH-HcC-----CCcEEEEEECccCCCH
Confidence            9999999999887777778889999999999964    3333322    221 122     3479999999999875

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.72  E-value=4.8e-18  Score=131.25  Aligned_cols=116  Identities=30%  Similarity=0.361  Sum_probs=79.7

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC----CCceeeEEEEEEE------------EECCeEEEEEEEeCCCccc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY----KATIGADFLTKEV------------QFEDRLFTLQIWDTAGQER   69 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~   69 (156)
                      .+.++|+++|.+++|||||+++|.+.......    .++.+..+.....            ..+.....+++|||||+..
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            45689999999999999999999865432211    1122221111000            0000112599999999999


Q ss_pred             ccchhhhheecccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           70 FQSLGVAFYRGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        70 ~~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |..++...++.+|++++|||+++   +.+++.+..    +..       .++|+++|+||+|+...
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~-------~~vPiIVViNKiDl~~~  137 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM-------YRTPFVVAANKIDRIHG  137 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH-------TTCCEEEEEECGGGSTT
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH-------cCCeEEEEecccccccc
Confidence            99999989999999999999999   555544332    211       17899999999999753

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.72  E-value=1.3e-17  Score=120.78  Aligned_cols=74  Identities=15%  Similarity=0.235  Sum_probs=63.4

Q ss_pred             EEEEEEEeCCCcccccchhhhheecccEEEEEEECC----------ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEe
Q 031598           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN  125 (156)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n  125 (156)
                      .+.+++|||+|++.++..|..+++.++++++|||++          +..++.+...|+..+.....   ..++|+++|+|
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~---~~~~piiLv~N  236 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF---LKGAVKLIFLN  236 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG---GTTSEEEEEEE
T ss_pred             eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc---cCCCeEEEEEE
Confidence            378999999999999999999999999999999998          67788888888877764322   23789999999


Q ss_pred             cCCCCCC
Q 031598          126 KIDVDGG  132 (156)
Q Consensus       126 K~Dl~~~  132 (156)
                      |+|+.++
T Consensus       237 K~DL~~e  243 (340)
T 4fid_A          237 KMDLFEE  243 (340)
T ss_dssp             CHHHHHH
T ss_pred             Cchhhhh
Confidence            9999764

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.72  E-value=9.6e-18  Score=130.10  Aligned_cols=123  Identities=20%  Similarity=0.225  Sum_probs=80.5

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC-------------------------------CCceeeEEEEEEEEEC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-------------------------------KATIGADFLTKEVQFE   53 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~   53 (156)
                      .+..++|+++|.+++|||||+++|++....-..                               .+..+.+.....+...
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            345789999999999999999999866321110                               0112222222333333


Q ss_pred             CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhh---HHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                        ...+++|||||+..+.......++.+|++++|||+++...   +.....+...+..... ..  ..|+++|+||+|+.
T Consensus       244 --~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lg--i~~iIVVvNKiDl~  318 (611)
T 3izq_1          244 --RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG--IHNLIIAMNKMDNV  318 (611)
T ss_dssp             --SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TT--CCEEEEEEECTTTT
T ss_pred             --CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cC--CCeEEEEEeccccc
Confidence              3689999999999999898999999999999999997531   1001111222211111 10  23599999999998


Q ss_pred             CC
Q 031598          131 GG  132 (156)
Q Consensus       131 ~~  132 (156)
                      +.
T Consensus       319 ~~  320 (611)
T 3izq_1          319 DW  320 (611)
T ss_dssp             TT
T ss_pred             ch
Confidence            74

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.72  E-value=8.2e-18  Score=125.07  Aligned_cols=119  Identities=18%  Similarity=0.147  Sum_probs=82.0

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcC--------CCCCC-------CCCceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNK--------KFSNQ-------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (156)
                      .+..++|+++|.+++|||||+++|.+.        .+...       .....+.+.......+......+++|||||++.
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            456799999999999999999999863        11100       000111222222233333346799999999999


Q ss_pred             ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCC
Q 031598           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDG  131 (156)
Q Consensus        70 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~  131 (156)
                      |.......++.+|++++|+|+++....+. .+++..+.. .      ++| +++|+||+|+.+
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~-~------~ip~iivviNK~Dl~~  142 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ-V------GVPYIVVFMNKVDMVD  142 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH-T------TCCCEEEEEECGGGCC
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH-c------CCCEEEEEEECccccC
Confidence            98888888999999999999998654333 344443322 1      667 899999999985

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.71  E-value=3.2e-18  Score=128.98  Aligned_cols=118  Identities=15%  Similarity=0.258  Sum_probs=79.1

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcC--CCCCC-----------------------------CCCceeeEEEEEEEEEC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQ-----------------------------YKATIGADFLTKEVQFE   53 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~   53 (156)
                      .+..++|+++|.+++|||||+++|++.  .+...                             .....+.+.....+.. 
T Consensus         4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-   82 (458)
T 1f60_A            4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-   82 (458)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-
T ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-
Confidence            456799999999999999999999854  11100                             0011112222223333 


Q ss_pred             CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh---hHH---HHHHHHHHHHHhcCCCCCCCCc-EEEEEec
Q 031598           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SFD---NLNNWREEFLIQASPSDPDNFP-FVVLGNK  126 (156)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK  126 (156)
                       ....+++|||||+..|.......++.+|++++|||+++..   +|+   ...+.+. +....      ++| +++|+||
T Consensus        83 -~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~-~~~~~------~v~~iivviNK  154 (458)
T 1f60_A           83 -PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFTL------GVRQLIVAVNK  154 (458)
T ss_dssp             -SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHHT------TCCEEEEEEEC
T ss_pred             -CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHH-HHHHc------CCCeEEEEEEc
Confidence             3368999999999999888888999999999999999763   221   1111121 11111      555 9999999


Q ss_pred             CCCCC
Q 031598          127 IDVDG  131 (156)
Q Consensus       127 ~Dl~~  131 (156)
                      +|+.+
T Consensus       155 ~Dl~~  159 (458)
T 1f60_A          155 MDSVK  159 (458)
T ss_dssp             GGGGT
T ss_pred             ccccc
Confidence            99984

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.71  E-value=1.5e-16  Score=116.00  Aligned_cols=78  Identities=13%  Similarity=0.225  Sum_probs=64.3

Q ss_pred             EEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCC----------hhhHHHHHHHHHHHHHhcCCCCCCCC
Q 031598           49 EVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDNF  118 (156)
Q Consensus        49 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (156)
                      .+.+++  +.+.+|||+|++.++..|..+++.++++++|||+++          ..++.+...|+..+....   ...++
T Consensus       187 ~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~---~~~~~  261 (353)
T 1cip_A          187 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK---WFTDT  261 (353)
T ss_dssp             EEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG---GGTTS
T ss_pred             EEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc---cccCC
Confidence            344444  789999999999999999999999999999999999          456888877777776421   12378


Q ss_pred             cEEEEEecCCCCC
Q 031598          119 PFVVLGNKIDVDG  131 (156)
Q Consensus       119 p~ilv~nK~Dl~~  131 (156)
                      |+++|+||+|+..
T Consensus       262 piiLv~NK~DL~~  274 (353)
T 1cip_A          262 SIILFLNKKDLFE  274 (353)
T ss_dssp             EEEEEEECHHHHH
T ss_pred             cEEEEEECcCchh
Confidence            9999999999964

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.70  E-value=1.3e-16  Score=116.36  Aligned_cols=75  Identities=13%  Similarity=0.181  Sum_probs=62.6

Q ss_pred             eEEEEEEEeCCCcccccchhhhheecccEEEEEEECC----------ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 031598           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG  124 (156)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~  124 (156)
                      ..+.+++|||+|++.++..|..+++.++++++|||++          +..++++...|+..+....   ...++|+++|+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~---~~~~~piiLvg  257 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP---CFEKTSFMLFL  257 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG---GGSSCEEEEEE
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc---ccCCCeEEEEE
Confidence            5689999999999999999999999999999999998          7788998888888776432   12378999999


Q ss_pred             ecCCCCCC
Q 031598          125 NKIDVDGG  132 (156)
Q Consensus       125 nK~Dl~~~  132 (156)
                      ||+|+.++
T Consensus       258 NK~DL~~~  265 (354)
T 2xtz_A          258 NKFDIFEK  265 (354)
T ss_dssp             ECHHHHHH
T ss_pred             ECcchhhh
Confidence            99999654

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.70  E-value=1.4e-16  Score=125.23  Aligned_cols=118  Identities=21%  Similarity=0.211  Sum_probs=84.0

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcC--CCCCC---C-------------CCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQ---Y-------------KATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (156)
                      ..+.++|+++|.+++|||||+++|+..  .....   .             .+..+.......+.+++  +.+++|||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence            356799999999999999999999842  11100   0             00111111122233444  7899999999


Q ss_pred             cccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +..+...+..+++.+|++++|+|+.+..+.+....|.. +..    .   +.|+++|+||+|+...
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~----~---~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT----Y---GVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH----T---TCCEEEEEECTTSTTC
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH----c---CCCEEEEEECCCcccc
Confidence            99999999999999999999999999877666554443 322    1   7799999999999875

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.69  E-value=1.9e-16  Score=124.65  Aligned_cols=121  Identities=19%  Similarity=0.160  Sum_probs=83.9

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCC--CCCC-----------C-----CCceeeEEEEEEEEEC-----CeEEEEEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--FSNQ-----------Y-----KATIGADFLTKEVQFE-----DRLFTLQI   61 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~-----------~-----~~~~~~~~~~~~~~~~-----~~~~~~~i   61 (156)
                      ..+.++|+++|..++|||||+++|+...  ....           .     ....+.......+.++     +..+.++|
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            4567999999999999999999997431  1100           0     0111111111222222     23378999


Q ss_pred             EeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        62 ~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      |||||+..|...+...++.+|++++|+|+++....+....|.. ..   . .   ++|+++|+||+|+...+
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~-~---~ip~ilviNKiD~~~~~  150 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN---K-Y---KVPRIAFVNKMDRMGAN  150 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH---H-c---CCCEEEEEeCCCccccc
Confidence            9999999998899999999999999999998766555443332 21   1 1   78999999999998753

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.68  E-value=2.5e-16  Score=112.42  Aligned_cols=119  Identities=18%  Similarity=0.322  Sum_probs=75.3

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC------CCcee--------------------eEE--------------
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------KATIG--------------------ADF--------------   45 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~------~~~~~--------------------~~~--------------   45 (156)
                      ...++|+|+|.+++|||||+++|.+.++.+..      .++..                    .+.              
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            45689999999999999999999988763211      12100                    000              


Q ss_pred             -----------EEEEEEECCeEEEEEEEeCCCcc-------------cccchhhhheecccEEE-EEEECCChhhHHHHH
Q 031598           46 -----------LTKEVQFEDRLFTLQIWDTAGQE-------------RFQSLGVAFYRGADCCV-LVYDVNSMKSFDNLN  100 (156)
Q Consensus        46 -----------~~~~~~~~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~l-~v~d~~~~~~~~~~~  100 (156)
                                 ....+... ....+.+|||||..             .+......+++.++.++ +|+|+++..+.....
T Consensus       104 ~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             cccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                       00000001 12579999999954             23455566777777665 799998765433332


Q ss_pred             HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598          101 NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+...+    ..   .+.|+++|+||+|+.++
T Consensus       183 ~~~~~~----~~---~~~~~i~V~NK~Dl~~~  207 (299)
T 2aka_B          183 KIAKEV----DP---QGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHHH----CT---TCSSEEEEEECGGGSCT
T ss_pred             HHHHHh----CC---CCCeEEEEEEccccCCC
Confidence            333333    22   26799999999999865

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.68  E-value=1.2e-17  Score=129.20  Aligned_cols=120  Identities=21%  Similarity=0.263  Sum_probs=63.2

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCC-------------------------------CCCCCCCceeeEEEEEEEEEC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK-------------------------------FSNQYKATIGADFLTKEVQFE   53 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   53 (156)
                      .+..++|+++|.+++|||||+++|+...                               ......+..+.+  .....+.
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid--~~~~~~~  251 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMD--VASTTFE  251 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEE--eeEEEEE
Confidence            4557899999999999999999996321                               000011122222  2222233


Q ss_pred             CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh---hH--HHHHHHHHHHHHhcCCCCCCCCc-EEEEEecC
Q 031598           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SF--DNLNNWREEFLIQASPSDPDNFP-FVVLGNKI  127 (156)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~  127 (156)
                      .....++||||||+..|.......++.+|++|+|||++++.   .+  .........+....      ++| +++|+||+
T Consensus       252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l------gip~iIvviNKi  325 (592)
T 3mca_A          252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL------GISEIVVSVNKL  325 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS------SCCCEEEEEECG
T ss_pred             eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc------CCCeEEEEEecc
Confidence            34478999999999999988888999999999999998642   11  10011111122222      555 99999999


Q ss_pred             CCCCC
Q 031598          128 DVDGG  132 (156)
Q Consensus       128 Dl~~~  132 (156)
                      |+.+.
T Consensus       326 Dl~~~  330 (592)
T 3mca_A          326 DLMSW  330 (592)
T ss_dssp             GGGTT
T ss_pred             ccccc
Confidence            99863

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.67  E-value=4.6e-16  Score=119.37  Aligned_cols=118  Identities=15%  Similarity=0.174  Sum_probs=85.6

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCC------------------C----CCCCCCceeeEEEEEEEEECCeEEEEEEEe
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKK------------------F----SNQYKATIGADFLTKEVQFEDRLFTLQIWD   63 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D   63 (156)
                      .+.+||+|+|..++|||||..+|+...                  +    ........+.......+.+++  +.++|+|
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID  106 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD  106 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence            457999999999999999999996210                  0    111111222222223344444  7899999


Q ss_pred             CCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      |||+.+|.......++.+|++|+|+|+......+...-|..... +       ++|.++++||+|....+
T Consensus       107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~-~-------~lp~i~fINK~Dr~~ad  168 (548)
T 3vqt_A          107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM-R-------ATPVMTFVNKMDREALH  168 (548)
T ss_dssp             CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH-T-------TCCEEEEEECTTSCCCC
T ss_pred             CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH-h-------CCceEEEEecccchhcc
Confidence            99999999999999999999999999999876666555544332 1       78999999999998864

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.67  E-value=3.4e-16  Score=117.49  Aligned_cols=117  Identities=26%  Similarity=0.238  Sum_probs=75.2

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch-----------
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-----------   73 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------   73 (156)
                      ...++|+++|++|+|||||++++.+.... ....++.+.+.....+.+++.  .+.+|||+|.......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            34689999999999999999999987632 111223333333455666764  6789999996432211           


Q ss_pred             -hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           74 -GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        74 -~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                       ...+++.+|++++++|+.+..+.... .+...+. .   .   +.|+++|+||+|+.++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~-~---~---~~~~ilv~NK~Dl~~~  307 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLME-R---R---GRASVVVFNKWDLVVH  307 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH-H---T---TCEEEEEEECGGGSTT
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHH-H---c---CCCEEEEEECccCCCc
Confidence             12356779999999999986655432 2222221 1   1   6799999999999865

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.67  E-value=1.1e-16  Score=117.27  Aligned_cols=119  Identities=14%  Similarity=0.217  Sum_probs=76.4

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeE---EE-------------------------------------
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD---FL-------------------------------------   46 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~---~~-------------------------------------   46 (156)
                      ...+|+|+|++|||||||+++|.+..+.+......+..   ..                                     
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            45699999999999999999999987632222211100   00                                     


Q ss_pred             --------------EEEEEECCeEEEEEEEeCCCcccc-------------cchhhhheecccEEEEEEECCChhhHHHH
Q 031598           47 --------------TKEVQFEDRLFTLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVNSMKSFDNL   99 (156)
Q Consensus        47 --------------~~~~~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~l~v~d~~~~~~~~~~   99 (156)
                                    ...+.. .....+++|||||...+             ......+++.+|++++++|..+.....  
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~-~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--  189 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYS-PNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--  189 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEE-TTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred             HhcCCCCCcccceEEEEEeC-CCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence                          000000 01135899999997665             556667889999999999876543222  


Q ss_pred             HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598          100 NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..|...+ ..+..   .+.|+++|+||+|+.++
T Consensus       190 ~~~~~l~-~~~~~---~~~~~i~V~nK~Dl~~~  218 (360)
T 3t34_A          190 SDAIKIS-REVDP---SGDRTFGVLTKIDLMDK  218 (360)
T ss_dssp             CHHHHHH-HHSCT---TCTTEEEEEECGGGCCT
T ss_pred             HHHHHHH-HHhcc---cCCCEEEEEeCCccCCC
Confidence            2233322 22222   26799999999999875

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.67  E-value=1.1e-16  Score=115.10  Aligned_cols=69  Identities=10%  Similarity=0.178  Sum_probs=45.7

Q ss_pred             EEEEEEeCCCccc-------------ccchhhhheecccEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCCCCCcEEE
Q 031598           57 FTLQIWDTAGQER-------------FQSLGVAFYRGADCCVLVYDVNSMKSF-DNLNNWREEFLIQASPSDPDNFPFVV  122 (156)
Q Consensus        57 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~l~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~il  122 (156)
                      ..+.+|||||...             +......+++.+|++++|+|..+.... .....+..    .+...   +.|+++
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~----~~~~~---~~~~i~  203 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAK----EVDPE---GKRTIG  203 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHH----HHCSS---CSSEEE
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHH----HhCCC---CCcEEE
Confidence            4699999999653             445566678899999999997543211 11111222    22222   679999


Q ss_pred             EEecCCCCCC
Q 031598          123 LGNKIDVDGG  132 (156)
Q Consensus       123 v~nK~Dl~~~  132 (156)
                      |+||+|+.+.
T Consensus       204 v~NK~Dl~~~  213 (315)
T 1jwy_B          204 VITKLDLMDK  213 (315)
T ss_dssp             EEECTTSSCS
T ss_pred             EEcCcccCCc
Confidence            9999999865

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.66  E-value=1.4e-16  Score=117.10  Aligned_cols=101  Identities=14%  Similarity=0.077  Sum_probs=72.0

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d   89 (156)
                      +|+++|.+++|||||+++|..+      ..+  .+....  .+......+++|||||++.|.......++.+|++++|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~------giT--i~~~~~--~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKK------GTS--SDITMY--NNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEE------EEE--SSSEEE--EECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC------CEE--EEeeEE--EEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            9999999999999999999811      111  122222  233334679999999999998777888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEEe-cCCC
Q 031598           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPF-VVLGN-KIDV  129 (156)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~n-K~Dl  129 (156)
                       +.. .+....+++..+.. .      ++|. ++|+| |+|+
T Consensus        93 -~~g-~~~qt~e~~~~~~~-~------~i~~~ivvvNNK~Dl  125 (370)
T 2elf_A           93 -PQG-LDAHTGECIIALDL-L------GFKHGIIALTRSDST  125 (370)
T ss_dssp             -TTC-CCHHHHHHHHHHHH-T------TCCEEEEEECCGGGS
T ss_pred             -CCC-CcHHHHHHHHHHHH-c------CCCeEEEEEEeccCC
Confidence             543 33333444443322 1      5677 89999 9999

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.66  E-value=8.3e-17  Score=123.58  Aligned_cols=118  Identities=19%  Similarity=0.241  Sum_probs=78.4

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCC---CCCCCceeeEEEEEEEE-------------------------------
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKEVQ-------------------------------   51 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~-------------------------------   51 (156)
                      ....+|+|+|.+|+|||||+|+|++.++.   ....++.  +.......                               
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T--~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~  140 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT--DCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL  140 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCC--CSEEEEECCSSSEEECCC------------------CCC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCcc--ceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence            45689999999999999999999998753   1112221  11110000                               


Q ss_pred             -------ECCeE-EEEEEEeCCCccc-----------ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCC
Q 031598           52 -------FEDRL-FTLQIWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASP  112 (156)
Q Consensus        52 -------~~~~~-~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~  112 (156)
                             .++.. ..+.+|||||...           +......++..+|++++|+|+++.........++..+    ..
T Consensus       141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~  216 (550)
T 2qpt_A          141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL----RG  216 (550)
T ss_dssp             TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT----TT
T ss_pred             ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH----Hh
Confidence                   00000 2589999999764           3355566788999999999998854444444454443    22


Q ss_pred             CCCCCCcEEEEEecCCCCCC
Q 031598          113 SDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus       113 ~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .   +.|+++|+||+|+.++
T Consensus       217 ~---~~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          217 H---EDKIRVVLNKADMVET  233 (550)
T ss_dssp             C---GGGEEEEEECGGGSCH
T ss_pred             c---CCCEEEEEECCCccCH
Confidence            1   5799999999999864

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.66  E-value=1.6e-16  Score=128.95  Aligned_cols=120  Identities=16%  Similarity=0.108  Sum_probs=80.5

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCC-------CCC-------CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK-------FSN-------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (156)
                      ....++|+++|..++|||||+++|.+..       +..       ....+.+.+.......++.....+++|||||++.|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            4557999999999999999999998631       000       00112222222222333344468999999999999


Q ss_pred             cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598           71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG  132 (156)
Q Consensus        71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~  132 (156)
                      .......++.+|++++|||+++....+. .+++..+.. .      ++| +++|+||+|+.++
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~-l------gIP~IIVVINKiDLv~d  427 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQ-V------GVPYIIVFLNKCDMVDD  427 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHH-H------TCSCEEEEEECCTTCCC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHH-c------CCCeEEEEEeecccccc
Confidence            8888888999999999999998644332 233333322 1      667 8999999999863

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.65  E-value=3.1e-16  Score=106.44  Aligned_cols=113  Identities=22%  Similarity=0.244  Sum_probs=68.5

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccchhhh
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLGVA   76 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~   76 (156)
                      +..+|+++|++|+|||||++++.+..+.....++.+.+.....+.+++   .+.+|||||...          +......
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  101 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE  101 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence            357899999999999999999998764333344444443333333333   478999999742          2222223


Q ss_pred             he---ecccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 FY---RGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 ~~---~~~~~~l~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++   +.++++++++|+.++.++..  +..|..    .      .+.|+++|+||+|+...
T Consensus       102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~----~------~~~~~~~v~nK~D~~s~  152 (210)
T 1pui_A          102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV----D------SNIAVLVLLTKADKLAS  152 (210)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH----H------TTCCEEEEEECGGGSCH
T ss_pred             HHHhhhcccEEEEEEECCCCCchhHHHHHHHHH----H------cCCCeEEEEecccCCCc
Confidence            33   46899999999998655432  222221    1      16799999999999764

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.65  E-value=1e-15  Score=120.43  Aligned_cols=120  Identities=13%  Similarity=0.232  Sum_probs=79.2

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCC-CCCceee------------EEE--------------------------
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGA------------DFL--------------------------   46 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~------------~~~--------------------------   46 (156)
                      ...++|+|+|.+++|||||+|+|.+.+.... ..++...            +..                          
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            3568999999999999999999998875322 1222210            000                          


Q ss_pred             ---------------EEEEEECCeE--EEEEEEeCCCccc---ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHH
Q 031598           47 ---------------TKEVQFEDRL--FTLQIWDTAGQER---FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEF  106 (156)
Q Consensus        47 ---------------~~~~~~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~  106 (156)
                                     ...+..+...  ..+.+|||||...   .......+++.+|++++|+|++++.+......|...+
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l  226 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI  226 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence                           0000011000  2589999999554   3345567788999999999999887766654444332


Q ss_pred             HHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598          107 LIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus       107 ~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                          ...   +.|+++|+||+|+..+
T Consensus       227 ----~~~---~~~iiiVlNK~Dl~~~  245 (695)
T 2j69_A          227 ----KGR---GLTVFFLVNAWDQVRE  245 (695)
T ss_dssp             ----TTS---CCCEEEEEECGGGGGG
T ss_pred             ----Hhh---CCCEEEEEECcccccc
Confidence                221   5689999999999754

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.63  E-value=1.5e-15  Score=112.53  Aligned_cols=85  Identities=16%  Similarity=0.165  Sum_probs=47.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEE--E-------------------EECC-eEEEEEEEeCCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE--V-------------------QFED-RLFTLQIWDTAG   66 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~i~D~~g   66 (156)
                      ++|+++|.+++|||||+|+|.+........+..+.+.....  +                   .+++ ....+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            48999999999999999999987632111111111111111  1                   1122 246899999999


Q ss_pred             cccc----cchh---hhheecccEEEEEEECCCh
Q 031598           67 QERF----QSLG---VAFYRGADCCVLVYDVNSM   93 (156)
Q Consensus        67 ~~~~----~~~~---~~~~~~~~~~l~v~d~~~~   93 (156)
                      ....    ..+.   ...++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            7532    2222   2456889999999999875

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.61  E-value=1.5e-15  Score=119.04  Aligned_cols=115  Identities=16%  Similarity=0.133  Sum_probs=80.6

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC------------------CCceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (156)
                      .+..+|+++|+.|+|||||+++|.+.......                  ....+.......+...  .+.+++|||||+
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG~   84 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGY   84 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCS
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCCc
Confidence            45689999999999999999999843221000                  0011111222233333  378999999999


Q ss_pred             ccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        68 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      ..+...+..+++.+|++++|+|..+....... .++..+..    .   ++|+++|+||+|+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~----~---~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----L---GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----T---TCCEEEEEECGGGC
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----c---cCCEEEEecCCchh
Confidence            99998899999999999999998876543332 33333322    1   78999999999998

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.61  E-value=6.4e-15  Score=116.26  Aligned_cols=120  Identities=19%  Similarity=0.189  Sum_probs=85.1

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcC--------CC----------CCCCCCceeeEEEEEEEEEC-----CeEEEEEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNK--------KF----------SNQYKATIGADFLTKEVQFE-----DRLFTLQIW   62 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~--------~~----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~   62 (156)
                      .+.+||+|+|..++|||||..+|+..        +.          ..+.....+.......+.+.     ...+.++|+
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            56799999999999999999998621        10          00111111111112222222     235899999


Q ss_pred             eCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           63 DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        63 D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      |||||.+|.......++.+|++|+|+|+...-..+...-|.+....        ++|.++|+||+|....+
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~--------~lp~i~~iNKiDr~~a~  153 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY--------GVPRIVYVNKMDRQGAN  153 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH--------TCCEEEEEECSSSTTCC
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc--------CCCeEEEEccccccCcc
Confidence            9999999999999999999999999999997766665555555432        78999999999998764

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.56  E-value=1.4e-14  Score=106.25  Aligned_cols=119  Identities=17%  Similarity=0.144  Sum_probs=82.2

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cchhhhhee
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYR   79 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~   79 (156)
                      ...+|+++|.|++|||||+|+|.+.+......+..+.+.....+.+++  .+++++||||-..-       .......++
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            347899999999999999999998875544455555666667777777  67899999994322       122234567


Q ss_pred             cccEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           80 GADCCVLVYDVNSMKSF-DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        80 ~~~~~l~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+|++++|+|+++|..- +.+...+..+...+     ...|.+++.||.|....
T Consensus       149 ~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-----~~k~~~i~~nK~d~~gi  197 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLHHKQIIEKELEGVGIRL-----NKTPPDILIKKKEKGGI  197 (376)
T ss_dssp             HCSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-----TCCCCCEEEEECSSSCE
T ss_pred             hcCccccccccCccHHHHHHHHHHHHHhhHhh-----ccCChhhhhhHhhhhhh
Confidence            89999999999997532 22222222221111     15688999999998653

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.54  E-value=1.1e-14  Score=106.43  Aligned_cols=29  Identities=24%  Similarity=0.602  Sum_probs=25.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCC
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS   34 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~   34 (156)
                      ....+|+|+|.+++|||||+++|.+.++.
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~   57 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFL   57 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence            34579999999999999999999988763

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.52  E-value=7.7e-14  Score=101.85  Aligned_cols=84  Identities=23%  Similarity=0.127  Sum_probs=54.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCe---------------EEEEEEEeCCCccccc--
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERFQ--   71 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~--   71 (156)
                      ++|+++|.+++|||||+++|.+........+..+.+.....+.+++.               ...+++|||||.....  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            68999999999999999999987632211221111111222333332               1479999999976542  


Q ss_pred             -----chhhhheecccEEEEEEECCC
Q 031598           72 -----SLGVAFYRGADCCVLVYDVNS   92 (156)
Q Consensus        72 -----~~~~~~~~~~~~~l~v~d~~~   92 (156)
                           ......++.+|++++|+|+++
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCC
Confidence                 222335789999999999986

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.52  E-value=1.1e-15  Score=119.18  Aligned_cols=119  Identities=18%  Similarity=0.189  Sum_probs=84.2

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC--CCC---CCC-----------CCceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK--KFS---NQY-----------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~--~~~---~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (156)
                      +.+||+|+|..++|||||..+|+..  ...   ...           ....+.+......++...++.++|+|||||.+|
T Consensus         1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF   80 (638)
T 3j25_A            1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence            3578999999999999999999621  100   000           000112222222333344578999999999999


Q ss_pred             cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      .......++.+|++++|+|+...-..+.-.-|......        ++|.++++||+|....+
T Consensus        81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~--------~lp~i~~INKmDr~~a~  135 (638)
T 3j25_A           81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM--------GIPTIFFINKIDQNGID  135 (638)
T ss_dssp             HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH--------TCSCEECCEECCSSSCC
T ss_pred             HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc--------CCCeEEEEeccccccCC
Confidence            99999999999999999999987655554444443321        77999999999998764

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.51  E-value=2.6e-14  Score=106.31  Aligned_cols=117  Identities=16%  Similarity=0.210  Sum_probs=61.2

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCC--------CCceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------c
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------S   72 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~   72 (156)
                      .++|+++|++|+|||||+++|.+.......        .++.............+....+++||++|.....       .
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~  110 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP  110 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence            578999999999999999999987653211        1111111111111222333478999999965431       1


Q ss_pred             ------------------hhhhheecccEEEEEEECCCh-hhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           73 ------------------LGVAFYRGADCCVLVYDVNSM-KSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        73 ------------------~~~~~~~~~~~~l~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                                        +...++..+++.+++|..... .++.... .|+..+    ..    +.|+|+|+||+|+...
T Consensus       111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L----~~----~v~iIlVinK~Dll~~  182 (418)
T 2qag_C          111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL----HE----KVNIIPLIAKADTLTP  182 (418)
T ss_dssp             HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH----TT----TSEEEEEEESTTSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH----hc----cCcEEEEEEcccCccH
Confidence                              112334444443444443322 2333332 444444    21    6799999999999764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.48  E-value=1.2e-14  Score=104.09  Aligned_cols=118  Identities=18%  Similarity=0.294  Sum_probs=58.8

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC-CCCCCC--------CCceeeEEEEEEEEECCeEEEEEEEeCCCc-------ccc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK-KFSNQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ERF   70 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~   70 (156)
                      -.++|+++|++|+|||||++++.+. .++...        .++.............+....+++||++|.       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            3589999999999999999998875 332221        011111111111122333468999999997       444


Q ss_pred             cchhh-------hheec-------------ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           71 QSLGV-------AFYRG-------------ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        71 ~~~~~-------~~~~~-------------~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      .....       .+++.             +++++++.+... .+++...  .+.+.. +..    ..|+++|+||+|+.
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~-l~~----~~~iilV~~K~Dl~  168 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKA-IHN----KVNIVPVIAKADTL  168 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHH-HTT----TSCEEEEECCGGGS
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHH-HHh----cCCEEEEEEeCCCC
Confidence            44433       33322             234555544322 1233322  122222 221    57899999999998


Q ss_pred             CC
Q 031598          131 GG  132 (156)
Q Consensus       131 ~~  132 (156)
                      .+
T Consensus       169 ~~  170 (301)
T 2qnr_A          169 TL  170 (301)
T ss_dssp             CH
T ss_pred             CH
Confidence            64

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.48  E-value=1.7e-13  Score=101.89  Aligned_cols=119  Identities=18%  Similarity=0.118  Sum_probs=75.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc----cchhhh---heeccc
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSLGVA---FYRGAD   82 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~---~~~~~~   82 (156)
                      .|+++|++|+|||||++++.+....-...+..+.......+..++ ...+.+||+||....    ..+...   .+..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            478999999999999999998753111111111112223333333 246899999996432    112122   235689


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .++.++|++ ...+..+..+..++..+...  ....|.++|+||+|+...
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~a--L~~~P~ILVlNKlDl~~~  284 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPA--LLRRPSLVALNKVDLLEE  284 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHH--HHHSCEEEEEECCTTSCH
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHH--hhcCCEEEEEECCChhhH
Confidence            999999998 55666676666666554210  015689999999999853

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.46  E-value=5.6e-13  Score=98.50  Aligned_cols=80  Identities=13%  Similarity=0.177  Sum_probs=68.1

Q ss_pred             EEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCC----------hhhHHHHHHHHHHHHHhcCCCCCCC
Q 031598           48 KEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDN  117 (156)
Q Consensus        48 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  117 (156)
                      ..+.+++  +.+++|||+|++.++..|..+++.++++++|||+++          ..+|.++..|+..+....   ...+
T Consensus       210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~---~~~~  284 (402)
T 1azs_C          210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR---WLRT  284 (402)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT---TCSS
T ss_pred             EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc---cCCC
Confidence            3445555  789999999999999999999999999999999999          889999999988876432   2237


Q ss_pred             CcEEEEEecCCCCCC
Q 031598          118 FPFVVLGNKIDVDGG  132 (156)
Q Consensus       118 ~p~ilv~nK~Dl~~~  132 (156)
                      +|++||+||+|+.++
T Consensus       285 ~piiLvgNK~DL~~~  299 (402)
T 1azs_C          285 ISVILFLNKQDLLAE  299 (402)
T ss_dssp             CCEEEEEECHHHHHH
T ss_pred             CeEEEEEEChhhhhh
Confidence            899999999999654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.43  E-value=7e-13  Score=97.04  Aligned_cols=79  Identities=11%  Similarity=0.151  Sum_probs=59.3

Q ss_pred             EEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCC----------hhhHHHHHHHHHHHHHhcCCCCCCC
Q 031598           48 KEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDN  117 (156)
Q Consensus        48 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  117 (156)
                      ..+.+++  +.+.+|||+|++.++..|..+++.++++++|||+++          ..++.+...|+..+....   ...+
T Consensus       194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~---~~~~  268 (362)
T 1zcb_A          194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR---VFSN  268 (362)
T ss_dssp             EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG---GGTT
T ss_pred             EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch---hhCC
Confidence            3445554  789999999999999999999999999999999999          778888888888776431   1237


Q ss_pred             CcEEEEEecCCCCC
Q 031598          118 FPFVVLGNKIDVDG  131 (156)
Q Consensus       118 ~p~ilv~nK~Dl~~  131 (156)
                      +|+++|+||+|+.+
T Consensus       269 ~piILv~NK~DL~~  282 (362)
T 1zcb_A          269 VSIILFLNKTDLLE  282 (362)
T ss_dssp             SEEEEEEECHHHHH
T ss_pred             CCEEEEEEChhhhh
Confidence            89999999999964

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.37  E-value=1.6e-12  Score=95.24  Aligned_cols=84  Identities=23%  Similarity=0.141  Sum_probs=53.6

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC-------------------eEEEEEEEeCCCccc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-------------------RLFTLQIWDTAGQER   69 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~   69 (156)
                      ++|+++|.+|+|||||++++.+........+..+.........+++                   ....+.+|||||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5799999999999999999987642111111111111111122221                   235799999999765


Q ss_pred             cc-------chhhhheecccEEEEEEECCC
Q 031598           70 FQ-------SLGVAFYRGADCCVLVYDVNS   92 (156)
Q Consensus        70 ~~-------~~~~~~~~~~~~~l~v~d~~~   92 (156)
                      ..       ......++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            42       222345789999999999986

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.35  E-value=6.2e-13  Score=98.00  Aligned_cols=88  Identities=20%  Similarity=0.133  Sum_probs=50.1

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCe---------------EEEEEEEeCCCcccccc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERFQS   72 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~~   72 (156)
                      ..+|+++|.+|+|||||++++.+........++.+.+.....+.+++.               ...+++|||||......
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as  101 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH  101 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence            478999999999999999999987653222233222222333333331               23599999999765432


Q ss_pred             -------hhhhheecccEEEEEEECCChhh
Q 031598           73 -------LGVAFYRGADCCVLVYDVNSMKS   95 (156)
Q Consensus        73 -------~~~~~~~~~~~~l~v~d~~~~~~   95 (156)
                             .+..+++.+|++++|+|+.+..+
T Consensus       102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          102 NGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             -----CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             hhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence                   45567789999999999986443

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.33  E-value=1e-11  Score=98.11  Aligned_cols=120  Identities=16%  Similarity=0.226  Sum_probs=72.4

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceee------------------------------------------
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA------------------------------------------   43 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~------------------------------------------   43 (156)
                      ....+|+|+|..++|||||+|+|.+..+-+......+.                                          
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            45689999999999999999999998762111111100                                          


Q ss_pred             ---------EEEEEEEEECCeEEEEEEEeCCCccc-------------ccchhhhhe-ecccEEEEEEECCChhhHHHHH
Q 031598           44 ---------DFLTKEVQFEDRLFTLQIWDTAGQER-------------FQSLGVAFY-RGADCCVLVYDVNSMKSFDNLN  100 (156)
Q Consensus        44 ---------~~~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~~~~l~v~d~~~~~~~~~~~  100 (156)
                               ......+..++ ...+.++||||...             +..+...++ ..+|++++|+|++....-....
T Consensus       129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                     00011111111 12578999999433             122223333 5789999999998753322221


Q ss_pred             HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598          101 NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      .+...+    ...   +.|+++|+||+|+.++.
T Consensus       208 ~ll~~L----~~~---g~pvIlVlNKiDlv~~~  233 (772)
T 3zvr_A          208 KIAKEV----DPQ---GQRTIGVITKLDLMDEG  233 (772)
T ss_dssp             HHHHHH----CTT---CSSEEEEEECTTSSCTT
T ss_pred             HHHHHH----Hhc---CCCEEEEEeCcccCCcc
Confidence            223322    222   67999999999998653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.31  E-value=5.6e-13  Score=95.46  Aligned_cols=97  Identities=16%  Similarity=0.084  Sum_probs=77.5

Q ss_pred             HHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh-hHHHHH
Q 031598           23 SLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLN  100 (156)
Q Consensus        23 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~  100 (156)
                      +++.++....+. ..+.++.+..+. ..  ..... .+.+||+  ++.+..++..+++.+|++++|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            577788877777 777888885443 22  22222 7899999  8899999999999999999999999987 788888


Q ss_pred             HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598          101 NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .|+..+..       .++|+++|+||+|+.++
T Consensus       106 ~~l~~~~~-------~~~piilv~NK~DL~~~  130 (301)
T 1u0l_A          106 KFLVLAEK-------NELETVMVINKMDLYDE  130 (301)
T ss_dssp             HHHHHHHH-------TTCEEEEEECCGGGCCH
T ss_pred             HHHHHHHH-------CCCCEEEEEeHHHcCCc
Confidence            88887643       17899999999999865

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.24  E-value=1e-12  Score=96.16  Aligned_cols=61  Identities=20%  Similarity=0.193  Sum_probs=41.9

Q ss_pred             EEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +.+.++||||...   .....+..+|++++|+|....+....+.            ......|+++|+||+|+...
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~------------~~~~~~p~ivVlNK~Dl~~~  232 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK------------KGVLELADIVVVNKADGEHH  232 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC------------TTSGGGCSEEEEECCCGGGH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH------------HhHhhcCCEEEEECCCCcCh
Confidence            6789999999432   2334458899999999987654432221            01114589999999999753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.21  E-value=2.2e-11  Score=88.84  Aligned_cols=60  Identities=17%  Similarity=0.154  Sum_probs=36.2

Q ss_pred             EEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      +.+.++||+|....   .......+|++++|+|.+.+...+.+..   .+   .      ..|.++|+||+|+.+
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i---l------~~~~ivVlNK~Dl~~  226 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI---I------EMADLVAVTKSDGDL  226 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------C------CSCSEEEECCCSGGG
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH---H------hcCCEEEEeeecCCC
Confidence            56899999995322   2334578999999999987543221111   11   1      457899999999974

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.17  E-value=7.3e-11  Score=82.49  Aligned_cols=69  Identities=14%  Similarity=0.027  Sum_probs=41.4

Q ss_pred             EEEEEEeCCCcccccchhh------hheecccEEEEEEECCChhh---HHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 031598           57 FTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVNSMKS---FDNLNNWREEFLIQASPSDPDNFPFVVLGNKI  127 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~l~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  127 (156)
                      +.+.+|||||.........      ..+.. +++++++|......   +.....+........      +.|+++|+||+
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~------~~p~~iv~NK~  181 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL------GATTIPALNKV  181 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH------TSCEEEEECCG
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc------CCCeEEEEecc
Confidence            5799999999876533221      23455 88888888764322   222111111111111      57999999999


Q ss_pred             CCCCC
Q 031598          128 DVDGG  132 (156)
Q Consensus       128 Dl~~~  132 (156)
                      |+...
T Consensus       182 D~~~~  186 (262)
T 1yrb_A          182 DLLSE  186 (262)
T ss_dssp             GGCCH
T ss_pred             ccccc
Confidence            99864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.15  E-value=9.3e-12  Score=84.93  Aligned_cols=110  Identities=18%  Similarity=0.222  Sum_probs=61.4

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeE--------------EEEEEEEE----------------CCeE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--------------FLTKEVQF----------------EDRL   56 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~   56 (156)
                      +..+|+++|.+|+|||||+++|...............+              ........                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            45799999999999999999998652111000000000              00001100                0112


Q ss_pred             EEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      +.+.+|||+|+....   ..+....+.+++|+|+.+....  ...+....          +.|+++|+||+|+.+
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~~----------~~~~iiv~NK~Dl~~  168 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEIF----------RVADLIVINKVALAE  168 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHHH----------HTCSEEEEECGGGHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhhh----------hcCCEEEEecccCCc
Confidence            467899999851111   0111246789999998765321  11111111          468899999999964

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.12  E-value=1.1e-11  Score=90.12  Aligned_cols=61  Identities=16%  Similarity=0.230  Sum_probs=38.7

Q ss_pred             EEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +.+.++||||......   .....+|++++|+|.+....++.+..   ..         .+.|.++|+||+|+.+.
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~---------~~~p~ivv~NK~Dl~~~  209 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL---------MEVADLIVINKDDGDNH  209 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH---------HHHCSEEEECCCCTTCH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh---------hcccCEEEEECCCCCCh
Confidence            5799999999654432   24588999999999876543211110   00         04578999999999764

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.02  E-value=4.6e-10  Score=82.85  Aligned_cols=85  Identities=20%  Similarity=0.199  Sum_probs=57.6

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCe---------------EEEEEEEeCCCccc--
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER--   69 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~--   69 (156)
                      ..+++++|++|+|||||++.|.+... .....|+.+.+.....+.+++.               ...+.+||+||...  
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~   99 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   99 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence            47899999999999999999998764 2222333223333333444431               13689999999432  


Q ss_pred             -----ccchhhhheecccEEEEEEECCC
Q 031598           70 -----FQSLGVAFYRGADCCVLVYDVNS   92 (156)
Q Consensus        70 -----~~~~~~~~~~~~~~~l~v~d~~~   92 (156)
                           +...+...++.+|++++|+|+.+
T Consensus       100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A          100 STGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                 33345556788999999999874

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.95  E-value=8.5e-11  Score=86.35  Aligned_cols=112  Identities=17%  Similarity=0.137  Sum_probs=65.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC-----CCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------hhh
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK-----KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGV   75 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~   75 (156)
                      .+++++|.+|+|||||+|++.+.     .... .....+++..........   .+.++||||......        ...
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~-~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~  238 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVIT-TSYFPGTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDLK  238 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCE-EEECTTSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCcccee-ecCCCCeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence            57999999999999999999976     2111 111112223333333333   378999999432221        111


Q ss_pred             hhe--ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           76 AFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        76 ~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+  +..+.++++++......+..+..     ...+..   .+.|+++++||+|....
T Consensus       239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~---~~~~~~~v~~k~d~~~~  289 (369)
T 3ec1_A          239 IITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKG---GRRSFVCYMANELTVHR  289 (369)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEES---SSEEEEEEECTTSCEEE
T ss_pred             HHhcccccCceEEEEcCCceEEECCEEE-----EEEccC---CCceEEEEecCCccccc
Confidence            121  56799999998753311111110     111121   26799999999998754

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.95  E-value=1.3e-09  Score=76.79  Aligned_cols=24  Identities=29%  Similarity=0.779  Sum_probs=21.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      ++++++|++|+|||||++.+.+..
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            689999999999999999998754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.93  E-value=1.2e-08  Score=75.98  Aligned_cols=60  Identities=25%  Similarity=0.429  Sum_probs=34.9

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCC----CCceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQY----KATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (156)
                      .++++++|++|+|||||++.+.+..+....    .+..............+-...++++|++|.
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~  105 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF  105 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence            367999999999999999999987532111    111111111111221222247899999984

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.91  E-value=2.9e-11  Score=82.72  Aligned_cols=28  Identities=21%  Similarity=0.389  Sum_probs=24.3

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS   34 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~   34 (156)
                      +.++|+++|.+|+|||||+++|....+.
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~   64 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD   64 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            4689999999999999999999876543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.89  E-value=2.4e-10  Score=83.95  Aligned_cols=113  Identities=13%  Similarity=0.147  Sum_probs=64.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCC-----CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch--------hh
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSN-----QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GV   75 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~   75 (156)
                      .+++++|.+|+|||||+|++.+.....     ......+++...........   +.++||||......+        ..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            579999999999999999999763211     11222223333333333332   789999995332211        11


Q ss_pred             hh--eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           76 AF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        76 ~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..  .+..+..+++++......+..+..     ...+..   .+.|+++|+||+|....
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~---~~~~~~~v~nk~d~~~~  288 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSG---GRRAFTCHFSNRLTIHR  288 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEES---SSEEEEEEECTTSCEEE
T ss_pred             HhccccccCceEEEEcCCCEEEEcceEE-----EEEecC---CCceEEEEecCcccccc
Confidence            11  255688888888743211111100     111121   26799999999999764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.86  E-value=7.3e-10  Score=80.45  Aligned_cols=60  Identities=13%  Similarity=0.159  Sum_probs=35.9

Q ss_pred             EEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      +.+.++||+|.....   ......+|.+++++|....+..+.+...   +.         ..+.++|+||+|+..
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~---------~~~~ivvlNK~Dl~~  207 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF---------ELADMIAVNKADDGD  207 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH---------HHCSEEEEECCSTTC
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh---------ccccEEEEEchhccC
Confidence            578999999964322   2234678999999998654322111111   11         235577889999754

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.77  E-value=2.8e-08  Score=75.52  Aligned_cols=116  Identities=20%  Similarity=0.254  Sum_probs=63.7

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHh------cCCCC----CCCCCce-----------eeEEEEEEEE-------------
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYV------NKKFS----NQYKATI-----------GADFLTKEVQ-------------   51 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~------~~~~~----~~~~~~~-----------~~~~~~~~~~-------------   51 (156)
                      .+...|+++|.+|+||||+++.|.      +.+..    +.+.+..           +.+.......             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            345789999999999999999998      33210    0101100           0111110000             


Q ss_pred             ECCeEEEEEEEeCCCcccccc-hh---hhh--eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEE
Q 031598           52 FEDRLFTLQIWDTAGQERFQS-LG---VAF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF-VVLG  124 (156)
Q Consensus        52 ~~~~~~~~~i~D~~g~~~~~~-~~---~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~  124 (156)
                      .....+.+.|+||||...... .+   ...  ...+|.+++|+|+.......   .....+..        ..|+ ++|+
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~--------~~~i~gvVl  247 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD--------KVDVASVIV  247 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH--------HHCCCCEEE
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh--------hcCceEEEE
Confidence            000235799999999653221 11   111  12689999999998754311   11222322        1364 8999


Q ss_pred             ecCCCCCC
Q 031598          125 NKIDVDGG  132 (156)
Q Consensus       125 nK~Dl~~~  132 (156)
                      ||+|....
T Consensus       248 NK~D~~~~  255 (504)
T 2j37_W          248 TKLDGHAK  255 (504)
T ss_dssp             ECTTSCCC
T ss_pred             eCCccccc
Confidence            99999754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.69  E-value=1.9e-08  Score=71.26  Aligned_cols=59  Identities=24%  Similarity=0.389  Sum_probs=36.2

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (156)
                      ...++++++|.+|+|||||+|++.+...... ....+++.....+....   .+.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeec-CCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            3568999999999999999999998764322 22222222222232322   58899999954

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.66  E-value=2.6e-08  Score=67.22  Aligned_cols=67  Identities=10%  Similarity=0.043  Sum_probs=43.6

Q ss_pred             CCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-CCCCcEEEEEecC-CCCCC
Q 031598           65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD-PDNFPFVVLGNKI-DVDGG  132 (156)
Q Consensus        65 ~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~-Dl~~~  132 (156)
                      .|+..++..|..|+..+|++|||+|++|.+.++ ....+..+...+.... ..+.|++|++||. |++..
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A  178 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR  178 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC
Confidence            378899999999999999999999999986554 3333333344444332 3588999999995 78654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.64  E-value=1.1e-08  Score=71.69  Aligned_cols=57  Identities=26%  Similarity=0.321  Sum_probs=35.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (156)
                      .+++++|.+|+|||||+|++.+...... .+..+.+.....+..+   ..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLE---NGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence            5899999999999999999998765322 2333333322222222   2578999999654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.54  E-value=1.3e-07  Score=73.68  Aligned_cols=24  Identities=21%  Similarity=0.452  Sum_probs=21.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      ..++|+|++|||||||++.+.+..
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            458999999999999999999874

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.50  E-value=3e-07  Score=65.76  Aligned_cols=59  Identities=20%  Similarity=0.073  Sum_probs=48.3

Q ss_pred             cccccchhhhheecccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           67 QERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++.+..+...+++.+|++++|||++++. ++..+..|+..+..       .++|+++|+||+|+.++
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-------~~~~~ilV~NK~DL~~~  125 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-------FKVEPVIVFNKIDLLNE  125 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-------TTCEEEEEECCGGGCCH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-------CCCCEEEEEEcccCCCc
Confidence            5556666777899999999999999986 88888888876543       17899999999999865

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.41  E-value=2.8e-07  Score=71.31  Aligned_cols=65  Identities=22%  Similarity=0.145  Sum_probs=39.7

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEE--EE-CCeEEEEEEEeCCCccc
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEV--QF-EDRLFTLQIWDTAGQER   69 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~--~~-~~~~~~~~i~D~~g~~~   69 (156)
                      ..+..+|+|+|.+++|||||+|+|.+.... .....+.+.+.....+  .. ......+.++||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            345689999999999999999999987632 1111111111111111  11 11224788999999543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.40  E-value=1.2e-06  Score=65.13  Aligned_cols=112  Identities=16%  Similarity=0.288  Sum_probs=58.0

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCce-eeEE--EEEEEEECCeEEEEEEEeCCCcccccchhhhh-----ee
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-GADF--LTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF-----YR   79 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~   79 (156)
                      ...++++|++|+|||||++.+.+...+....... +.+.  .....+... ...++++|++|..........+     +.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccc-cCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            3578999999999999999999854322111111 1110  011111111 1257899999843221111222     23


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        80 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      ..+..++ ++..... -+.+ .....+.. .      +.|+++|.||.|+.
T Consensus       148 ~~~~~~~-lS~G~~~-kqrv-~la~aL~~-~------~~p~~lV~tkpdll  188 (413)
T 1tq4_A          148 EYDFFII-ISATRFK-KNDI-DIAKAISM-M------KKEFYFVRTKVDSD  188 (413)
T ss_dssp             GCSEEEE-EESSCCC-HHHH-HHHHHHHH-T------TCEEEEEECCHHHH
T ss_pred             ccCCeEE-eCCCCcc-HHHH-HHHHHHHh-c------CCCeEEEEecCccc
Confidence            3455554 6765211 1111 11222221 1      67999999999874

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.33  E-value=1.2e-07  Score=66.93  Aligned_cols=68  Identities=10%  Similarity=0.042  Sum_probs=45.7

Q ss_pred             CCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-CCCCcEEEEEec-CCCCCC
Q 031598           64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD-PDNFPFVVLGNK-IDVDGG  132 (156)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK-~Dl~~~  132 (156)
                      .+||..++..|..|+..+|++|+|+|++|.+.++ ....+..+...+.... ..+.|++|++|| .|+++.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A  263 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR  263 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence            4578899999999999999999999999987654 2222222222221111 127899999997 588754

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.28  E-value=1.3e-06  Score=65.44  Aligned_cols=65  Identities=18%  Similarity=0.099  Sum_probs=39.3

Q ss_pred             EEEEEEeCCCcccccchhh------hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-c-EEEEEecCC
Q 031598           57 FTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNF-P-FVVLGNKID  128 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ilv~nK~D  128 (156)
                      +.+.|+||||.........      ..+..+|.+++|+|+.....   .......+.   .     .. | ..+|.||+|
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~---~-----~~~~i~gvVlnK~D  249 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK---E-----AVGEIGSIIVTKLD  249 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH---T-----TSCSCEEEEEECSS
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh---h-----cccCCeEEEEeCCC
Confidence            5689999999654211111      11235899999999876532   112222221   1     34 5 789999999


Q ss_pred             CCCC
Q 031598          129 VDGG  132 (156)
Q Consensus       129 l~~~  132 (156)
                      ....
T Consensus       250 ~~~~  253 (432)
T 2v3c_C          250 GSAK  253 (432)
T ss_dssp             SCST
T ss_pred             Cccc
Confidence            8653

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.25  E-value=3.3e-06  Score=63.21  Aligned_cols=66  Identities=18%  Similarity=0.045  Sum_probs=39.8

Q ss_pred             EEEEEEeCCCcccccchhhh------heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           57 FTLQIWDTAGQERFQSLGVA------FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~------~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      +.+.|+||+|..........      ....+|.+++|+|+........   ....+...       -.+..+|.||+|..
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~-------~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA-------TPIGSIIVTKLDGS  252 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS-------CTTEEEEEECCSSC
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh-------CCCeEEEEECCCCc
Confidence            57889999994432211111      1234789999999987543222   22333322       22567999999997


Q ss_pred             CC
Q 031598          131 GG  132 (156)
Q Consensus       131 ~~  132 (156)
                      ..
T Consensus       253 ~~  254 (443)
T 3dm5_A          253 AK  254 (443)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.00  E-value=1.1e-06  Score=65.59  Aligned_cols=66  Identities=20%  Similarity=0.102  Sum_probs=39.1

Q ss_pred             EEEEEEeCCCccc--ccc----hhhhh--eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598           57 FTLQIWDTAGQER--FQS----LGVAF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID  128 (156)
Q Consensus        57 ~~~~i~D~~g~~~--~~~----~~~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  128 (156)
                      +.+.++||||...  ...    .....  ....+.+++|+|+.......   .....+....       .+..+|.||+|
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~~-------~~~gVIlTKlD  249 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQAS-------PIGSVIITKMD  249 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHHC-------SSEEEEEECGG
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhccc-------CCcEEEEeccc
Confidence            5688999999543  111    11111  12358999999998754322   2233443322       25689999999


Q ss_pred             CCCC
Q 031598          129 VDGG  132 (156)
Q Consensus       129 l~~~  132 (156)
                      ....
T Consensus       250 ~~a~  253 (433)
T 3kl4_A          250 GTAK  253 (433)
T ss_dssp             GCSC
T ss_pred             cccc
Confidence            8643

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.94  E-value=1.3e-05  Score=57.06  Aligned_cols=65  Identities=18%  Similarity=0.089  Sum_probs=39.2

Q ss_pred             EEEEEEeCCCccc--ccchhh------hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecC
Q 031598           57 FTLQIWDTAGQER--FQSLGV------AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKI  127 (156)
Q Consensus        57 ~~~~i~D~~g~~~--~~~~~~------~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~  127 (156)
                      +.+.++||||...  ......      .....+|.+++|+|.....   ........+..        ..| ..+|.||+
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~--------~~~i~gvVlnk~  249 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ--------ASKIGTIIITKM  249 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH--------TCTTEEEEEECG
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh--------hCCCCEEEEeCC
Confidence            5689999999765  211111      1234689999999987532   12222233322        234 67899999


Q ss_pred             CCCCC
Q 031598          128 DVDGG  132 (156)
Q Consensus       128 Dl~~~  132 (156)
                      |....
T Consensus       250 D~~~~  254 (297)
T 1j8m_F          250 DGTAK  254 (297)
T ss_dssp             GGCTT
T ss_pred             CCCcc
Confidence            98643

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.82  E-value=8.5e-06  Score=59.79  Aligned_cols=57  Identities=16%  Similarity=0.230  Sum_probs=44.7

Q ss_pred             CcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        66 g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+.|...+..+.+.++++++|+|+.++.     ..|...+.++..     +.|+++|+||+|+.+.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-----~~p~ilV~NK~DL~~~  111 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-----NNKVLLVGNKADLIPK  111 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-----SSCEEEEEECGGGSCT
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-----CCcEEEEEEChhcCCc
Confidence            45778888888889999999999999864     345555555543     6799999999999765

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.78  E-value=0.0002  Score=53.80  Aligned_cols=27  Identities=22%  Similarity=0.322  Sum_probs=22.9

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..+..-|.|+|++++|||||+|.|++.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            345677899999999999999999853

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.77  E-value=9.5e-07  Score=66.78  Aligned_cols=96  Identities=9%  Similarity=0.034  Sum_probs=53.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEE---EEEEECCeEEEEEEEeCCCccc--ccchh-------
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT---KEVQFEDRLFTLQIWDTAGQER--FQSLG-------   74 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~--~~~~~-------   74 (156)
                      ....|+++|.+||||||+.++|...-..    .....+...   ......+......+||..|...  ....+       
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~----~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~  113 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNF----IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALND  113 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhc----cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999998754210    011111100   0000011112345788888632  22222       


Q ss_pred             -hhheecccEEEEEEECCChhhHHHHHHHHHHHH
Q 031598           75 -VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFL  107 (156)
Q Consensus        75 -~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~  107 (156)
                       ..++...++.++|+|.++. .......|+..+.
T Consensus       114 ~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~  146 (469)
T 1bif_A          114 VRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGE  146 (469)
T ss_dssp             HHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHH
Confidence             4455557888999999987 3444455555443

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.74  E-value=0.00016  Score=54.11  Aligned_cols=65  Identities=20%  Similarity=0.165  Sum_probs=38.0

Q ss_pred             EEEEEEeCCCcccccchhhh------heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCC
Q 031598           57 FTLQIWDTAGQERFQSLGVA------FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDV  129 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~------~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl  129 (156)
                      +.+.|+||||..........      .+..++.+++|+|+......   ......+..        ..+ .-+|.||+|.
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~--------~l~i~gvVlnK~D~  252 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE--------ALPLTGVVLTKVDG  252 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH--------HSCCCCEEEECTTS
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc--------cCCCeEEEEecCCC
Confidence            57899999996543211111      13357899999998764322   122223322        123 3479999998


Q ss_pred             CCC
Q 031598          130 DGG  132 (156)
Q Consensus       130 ~~~  132 (156)
                      ...
T Consensus       253 ~~~  255 (433)
T 2xxa_A          253 DAR  255 (433)
T ss_dssp             SSC
T ss_pred             Ccc
Confidence            643

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.70  E-value=2.1e-05  Score=51.86  Aligned_cols=22  Identities=50%  Similarity=0.919  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +++++|++|||||||++.+.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988755

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.67  E-value=1.2e-05  Score=58.95  Aligned_cols=57  Identities=18%  Similarity=0.222  Sum_probs=43.8

Q ss_pred             CcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        66 g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .++.|...+..+.+.++++++|+|+.++.+     .|...+.+++.     +.|+++|+||+|+.+.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-----~~piilV~NK~DLl~~  113 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-----DNPILLVGNKADLLPR  113 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-----TSCEEEEEECGGGSCT
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-----CCCEEEEEEChhcCCC
Confidence            477888888888899999999999999763     34444444443     6799999999999865

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.63  E-value=3.4e-05  Score=54.56  Aligned_cols=62  Identities=19%  Similarity=-0.006  Sum_probs=41.0

Q ss_pred             EEeCCCcc-cccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           61 IWDTAGQE-RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        61 i~D~~g~~-~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |-..||+. .........++.+|+++.|+|+.+|.+....     .+.+++.     +.|.++|+||+|+.+.
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-----~l~~~l~-----~kp~ilVlNK~DL~~~   65 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP-----MIEDILK-----NKPRIMLLNKADKADA   65 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHCS-----SSCEEEEEECGGGSCH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH-----HHHHHHC-----CCCEEEEEECcccCCH
Confidence            44678876 4455666778999999999999998765421     1222222     7799999999999864

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.63  E-value=2.8e-05  Score=51.17  Aligned_cols=22  Identities=32%  Similarity=0.739  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -++++|++|||||||++.+.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5799999999999999999864

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.62  E-value=4e-05  Score=49.94  Aligned_cols=30  Identities=20%  Similarity=0.406  Sum_probs=22.3

Q ss_pred             CCcccceeEEEEEEcCCCCChhHHHHHHhc
Q 031598            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      |.........|+++|++||||||+++.+.+
T Consensus         1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            333444456789999999999999998764

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.58  E-value=3.6e-05  Score=51.52  Aligned_cols=22  Identities=32%  Similarity=0.635  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..++++|++|||||||++.+.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3579999999999999999875

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.52  E-value=2.3e-05  Score=56.03  Aligned_cols=24  Identities=38%  Similarity=0.570  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -.++++|++|+|||||+|.+.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            367999999999999999998764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.52  E-value=5e-05  Score=50.68  Aligned_cols=22  Identities=45%  Similarity=0.555  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -++++|++||||||+++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4789999999999999999864

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.49  E-value=6e-05  Score=49.73  Aligned_cols=23  Identities=22%  Similarity=0.445  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -.++++|++||||||+++.+.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            45899999999999999999875

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.49  E-value=5.4e-05  Score=50.88  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -++++|++|||||||++.+.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            46899999999999999987643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.47  E-value=0.00025  Score=50.53  Aligned_cols=22  Identities=36%  Similarity=0.655  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|++|+|||||++.+. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            56899999999999999998 54

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.46  E-value=6.5e-05  Score=51.17  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -++++|++|||||||++.+.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999998754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.45  E-value=6.4e-05  Score=51.06  Aligned_cols=23  Identities=39%  Similarity=0.687  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|++|||||||++.+.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999988643

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.45  E-value=8.5e-05  Score=49.41  Aligned_cols=31  Identities=19%  Similarity=0.264  Sum_probs=23.3

Q ss_pred             CCcccceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      |.+...+...|++.|.+||||||+.+.|...
T Consensus         1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            4555666788999999999999999998765

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.45  E-value=9e-05  Score=49.67  Aligned_cols=30  Identities=17%  Similarity=0.214  Sum_probs=23.5

Q ss_pred             CCcccceeEEEEEEcCCCCChhHHHHHHhc
Q 031598            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      |++...+...|++.|.+||||||+.+.|..
T Consensus         3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             TTCCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccchhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            333334456799999999999999998864

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.44  E-value=7.3e-05  Score=48.77  Aligned_cols=19  Identities=32%  Similarity=0.686  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCChhHHHHHH
Q 031598           10 KVIILGDSGVGKTSLMNQY   28 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l   28 (156)
                      -++++|++|||||||++.+
T Consensus        11 i~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4689999999999999943

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.43  E-value=9.7e-05  Score=49.67  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=21.1

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +...++|+|++|||||||++.+.+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999987643

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.40  E-value=8.9e-05  Score=49.91  Aligned_cols=24  Identities=29%  Similarity=0.523  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .-|+++|++||||||+++.|....
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            357899999999999999998654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.40  E-value=8.5e-05  Score=49.76  Aligned_cols=23  Identities=26%  Similarity=0.678  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .-|+++|++|+|||||++.|...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            45789999999999999999854

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.39  E-value=9.9e-05  Score=49.01  Aligned_cols=21  Identities=33%  Similarity=0.725  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      |+|+||+|+|||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.38  E-value=9.4e-05  Score=50.90  Aligned_cols=23  Identities=35%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            46899999999999999998764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.35  E-value=0.00011  Score=47.47  Aligned_cols=23  Identities=35%  Similarity=0.473  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|+|||||++.+.+.-
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            57899999999999999998754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.34  E-value=0.00012  Score=49.03  Aligned_cols=23  Identities=30%  Similarity=0.631  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .-|+++|++||||||+++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            35799999999999999998754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.34  E-value=0.00012  Score=47.55  Aligned_cols=23  Identities=22%  Similarity=0.521  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..|+++|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.34  E-value=0.00012  Score=48.81  Aligned_cols=24  Identities=29%  Similarity=0.552  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      ..++++|++||||||+++.|.+.-
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999998654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.33  E-value=0.00013  Score=47.22  Aligned_cols=22  Identities=14%  Similarity=0.209  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .|++.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998643

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.31  E-value=0.00013  Score=47.07  Aligned_cols=20  Identities=25%  Similarity=0.441  Sum_probs=18.4

Q ss_pred             EEEEEEcCCCCChhHHHHHH
Q 031598            9 LKVIILGDSGVGKTSLMNQY   28 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l   28 (156)
                      .-|++.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            35899999999999999999

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.31  E-value=0.00012  Score=50.00  Aligned_cols=23  Identities=35%  Similarity=0.401  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.29  E-value=0.00013  Score=48.09  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      -++++|++||||||+++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            468999999999999999975

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.29  E-value=0.00015  Score=49.96  Aligned_cols=22  Identities=36%  Similarity=0.705  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCChhHHHHHHh
Q 031598            8 LLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~   29 (156)
                      ...|+++|++||||||+++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999998

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.29  E-value=0.00019  Score=46.75  Aligned_cols=22  Identities=18%  Similarity=0.525  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4589999999999999999986

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.28  E-value=0.00015  Score=50.07  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.28  E-value=0.00015  Score=48.42  Aligned_cols=22  Identities=32%  Similarity=0.601  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..|+++|++||||||+++.+.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.27  E-value=0.00016  Score=48.49  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +...|+++|++|||||||++.+.+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999988653

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.27  E-value=0.00015  Score=48.77  Aligned_cols=22  Identities=23%  Similarity=0.605  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ++|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998853

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.26  E-value=0.00015  Score=50.66  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.26  E-value=0.00015  Score=51.05  Aligned_cols=23  Identities=35%  Similarity=0.609  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            36899999999999999998764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.25  E-value=0.00017  Score=48.57  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ++|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998853

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.25  E-value=0.00019  Score=47.26  Aligned_cols=25  Identities=28%  Similarity=0.511  Sum_probs=21.4

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +...|+++|.+||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999988754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.24  E-value=0.00016  Score=49.76  Aligned_cols=23  Identities=30%  Similarity=0.592  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.24  E-value=0.00017  Score=48.91  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+..
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.24  E-value=0.00017  Score=50.51  Aligned_cols=23  Identities=30%  Similarity=0.522  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            46899999999999999998764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.23  E-value=0.00019  Score=52.36  Aligned_cols=24  Identities=42%  Similarity=0.595  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKF   33 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~   33 (156)
                      .++++|++|+|||||++.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            579999999999999999997654

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.23  E-value=0.00021  Score=46.97  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..|++.|.+||||||+++.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.22  E-value=0.00017  Score=50.20  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.22  E-value=0.00017  Score=48.09  Aligned_cols=22  Identities=18%  Similarity=0.484  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .+|+++|.+||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999876

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.21  E-value=0.00028  Score=46.24  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ...|++.|.+||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998863

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.21  E-value=0.00021  Score=49.36  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.21  E-value=0.00021  Score=49.55  Aligned_cols=23  Identities=30%  Similarity=0.362  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998764

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.21  E-value=0.00017  Score=48.69  Aligned_cols=22  Identities=36%  Similarity=0.350  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .++++|+.|||||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999876

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.20  E-value=0.00019  Score=50.21  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            46899999999999999998764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.20  E-value=0.0002  Score=49.07  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+..
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998765

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.20  E-value=0.00019  Score=50.18  Aligned_cols=23  Identities=17%  Similarity=0.452  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -.++++|++||||||+++.+.+.
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHHh
Confidence            35899999999999999998754

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.19  E-value=0.00025  Score=47.30  Aligned_cols=22  Identities=27%  Similarity=0.601  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4789999999999999998863

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.19  E-value=0.00027  Score=48.77  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=21.4

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +.++|++.|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999998864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.19  E-value=0.0002  Score=47.74  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..|+++|.+||||||+++.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.19  E-value=0.00018  Score=47.84  Aligned_cols=22  Identities=36%  Similarity=0.634  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4789999999999999988754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.19  E-value=0.00022  Score=46.39  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .-|++.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999998753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.18  E-value=0.0002  Score=49.35  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.18  E-value=0.00028  Score=47.16  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +.|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999976

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.18  E-value=0.00023  Score=48.11  Aligned_cols=23  Identities=17%  Similarity=0.491  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ...|+++|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.18  E-value=0.00021  Score=49.80  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998764

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.17  E-value=0.00025  Score=47.09  Aligned_cols=21  Identities=29%  Similarity=0.612  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      .|++.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999998875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.17  E-value=0.00022  Score=49.50  Aligned_cols=23  Identities=22%  Similarity=0.514  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+..
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999998765

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.17  E-value=0.00023  Score=49.42  Aligned_cols=22  Identities=23%  Similarity=0.422  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .++++|+.|||||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999985

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.17  E-value=0.00022  Score=47.61  Aligned_cols=24  Identities=25%  Similarity=0.239  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...|+++|++||||||+.+.+.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999887643

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.17  E-value=0.00022  Score=48.51  Aligned_cols=24  Identities=29%  Similarity=0.634  Sum_probs=20.5

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +...|++.|.+||||||+.+.|..
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999998863

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.17  E-value=0.00024  Score=46.66  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..-++++|++|+|||||++++...
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            346799999999999999999864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.16  E-value=0.00023  Score=49.86  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .++++|+.|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999986

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.16  E-value=0.00028  Score=50.27  Aligned_cols=24  Identities=38%  Similarity=0.362  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKF   33 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~   33 (156)
                      .++++|++|||||||++.+.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            468999999999999999997653

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.16  E-value=0.0002  Score=46.87  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -.+++.|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999988754

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.15  E-value=0.00022  Score=50.06  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.15  E-value=0.00025  Score=49.47  Aligned_cols=23  Identities=17%  Similarity=0.377  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+-.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            47899999999999999998764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.15  E-value=0.00029  Score=46.42  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=19.9

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ...|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.15  E-value=0.00036  Score=46.44  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=20.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +...|++.|.+||||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999988863

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.14  E-value=0.00015  Score=49.53  Aligned_cols=22  Identities=27%  Similarity=0.551  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCChhHHHHHHh-cC
Q 031598           10 KVIILGDSGVGKTSLMNQYV-NK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~-~~   31 (156)
                      -++++|++||||||+++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            57899999999999999998 54

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.14  E-value=0.00027  Score=49.89  Aligned_cols=23  Identities=39%  Similarity=0.533  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+..
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999998764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.14  E-value=0.00027  Score=47.66  Aligned_cols=22  Identities=23%  Similarity=0.527  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ++|+++|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.14  E-value=0.00024  Score=50.72  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -.++|+|++|+|||||++.+.+-
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhhh
Confidence            35799999999999999988753

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.13  E-value=0.00027  Score=47.82  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.13  E-value=0.00032  Score=46.72  Aligned_cols=24  Identities=25%  Similarity=0.547  Sum_probs=20.8

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ....|++.|.+||||||+.+.|..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.12  E-value=0.00035  Score=45.99  Aligned_cols=23  Identities=35%  Similarity=0.548  Sum_probs=19.9

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ...|++.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999988753

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.11  E-value=0.00031  Score=46.10  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..|++.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998753

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.11  E-value=0.00026  Score=49.20  Aligned_cols=23  Identities=26%  Similarity=0.608  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998765

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.11  E-value=0.00026  Score=49.56  Aligned_cols=23  Identities=22%  Similarity=0.482  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999998764

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.11  E-value=0.00026  Score=50.75  Aligned_cols=25  Identities=16%  Similarity=0.202  Sum_probs=21.1

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .+..-++|+|++|||||||++.+.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            3456789999999999999998765

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.11  E-value=0.00027  Score=47.62  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ++|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.10  E-value=0.00025  Score=51.77  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -++++|++|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999999865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.10  E-value=0.00034  Score=45.87  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=20.0

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999998863

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.09  E-value=0.0003  Score=47.51  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=20.8

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +.+.|++.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998864

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.09  E-value=0.00025  Score=47.94  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -++++|++|||||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999863

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.08  E-value=0.00045  Score=46.19  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +...|+++|++||||||+++.|...
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3467899999999999999999864

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.08  E-value=0.0004  Score=46.34  Aligned_cols=23  Identities=22%  Similarity=0.224  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ...|++.|.+||||||+++.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.08  E-value=0.00043  Score=48.96  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=20.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ...-|++.|++||||||+++.+..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999999864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.08  E-value=0.00023  Score=48.23  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ....|+++|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998863

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.07  E-value=0.00034  Score=48.91  Aligned_cols=23  Identities=48%  Similarity=0.670  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+..
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998765

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=97.06  E-value=0.00037  Score=50.96  Aligned_cols=23  Identities=30%  Similarity=0.677  Sum_probs=20.7

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHH
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQY   28 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l   28 (156)
                      .+..||+++|.++||||||+..+
T Consensus        31 ~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHH
Confidence            45799999999999999998876

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.05  E-value=0.00038  Score=46.26  Aligned_cols=24  Identities=17%  Similarity=0.133  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...|++.|.+||||||+++.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999999864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.05  E-value=0.00038  Score=47.56  Aligned_cols=24  Identities=21%  Similarity=0.454  Sum_probs=20.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ...+|++.|.+||||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.05  E-value=0.00033  Score=51.06  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -++++|++|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999998765

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.04  E-value=0.00026  Score=51.75  Aligned_cols=25  Identities=32%  Similarity=0.397  Sum_probs=21.7

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .-+++|+|++|||||||++.+.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999987653

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.04  E-value=0.0004  Score=44.71  Aligned_cols=21  Identities=14%  Similarity=0.289  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.03  E-value=0.00057  Score=44.86  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..|++.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999988864

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.03  E-value=0.00035  Score=51.37  Aligned_cols=23  Identities=30%  Similarity=0.559  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            36899999999999999998765

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.03  E-value=0.00036  Score=45.58  Aligned_cols=23  Identities=35%  Similarity=0.648  Sum_probs=20.1

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ...|++.|.+||||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            35689999999999999998863

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.03  E-value=0.00029  Score=46.01  Aligned_cols=24  Identities=29%  Similarity=0.264  Sum_probs=16.3

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +...|++.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.03  E-value=0.00036  Score=51.00  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999998765

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.03  E-value=0.00036  Score=50.99  Aligned_cols=23  Identities=35%  Similarity=0.413  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            36899999999999999998764

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.03  E-value=0.00014  Score=48.12  Aligned_cols=23  Identities=22%  Similarity=0.418  Sum_probs=20.1

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ...|++.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999988863

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.02  E-value=0.00048  Score=49.57  Aligned_cols=24  Identities=21%  Similarity=0.236  Sum_probs=20.6

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~   29 (156)
                      ...+-|+++|++|||||||++.+.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345678999999999999998875

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.02  E-value=0.00053  Score=48.64  Aligned_cols=25  Identities=24%  Similarity=0.262  Sum_probs=20.9

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHh
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~   29 (156)
                      ..+...|+|.|++|||||||++.+.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3456789999999999999998764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.01  E-value=0.00039  Score=50.88  Aligned_cols=23  Identities=26%  Similarity=0.340  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -++++|++|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            36899999999999999998765

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.01  E-value=0.00063  Score=44.69  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=20.6

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +...|++.|.+||||||+++.+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            446789999999999999998864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.00  E-value=0.00046  Score=47.55  Aligned_cols=22  Identities=14%  Similarity=0.381  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..|+++|+.||||||+++.+.+
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999998865

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.00  E-value=0.0004  Score=50.97  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -++++|++|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            36899999999999999998764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.99  E-value=0.00039  Score=51.03  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            36899999999999999999775

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.99  E-value=0.00048  Score=44.97  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=20.1

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ...+.++|.+||||||++.++..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999874

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.99  E-value=0.00035  Score=44.56  Aligned_cols=23  Identities=26%  Similarity=0.644  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|++|+|||||++.+.+.-
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999988653

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.99  E-value=0.00016  Score=47.35  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .++|+|++|||||||++.+.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6799999999999999998865

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.99  E-value=0.00039  Score=48.84  Aligned_cols=21  Identities=38%  Similarity=0.616  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            899999999999999999875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.99  E-value=0.00047  Score=46.83  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      .|++.|.+||||||+++.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.98  E-value=0.00038  Score=50.79  Aligned_cols=22  Identities=23%  Similarity=0.522  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .++|+|++||||||+++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999988753

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.98  E-value=0.0004  Score=45.17  Aligned_cols=21  Identities=24%  Similarity=0.544  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      +|+++|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999988864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.96  E-value=0.00044  Score=49.08  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+..
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            46899999999999999998764

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.95  E-value=0.00059  Score=47.50  Aligned_cols=23  Identities=26%  Similarity=0.593  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ...|++.|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.95  E-value=0.00027  Score=50.52  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|++|||||||++.+.+-.
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCchHHHHHHHHHcCC
Confidence            57999999999999999988654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.94  E-value=0.0016  Score=46.62  Aligned_cols=51  Identities=16%  Similarity=0.165  Sum_probs=35.4

Q ss_pred             hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        76 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+..+|.+++|+|+.+|..-..   .++.++..+...   ++|.++|+||+||.++
T Consensus        82 ~~~anvD~v~~V~~~~~p~~~~~---~i~r~L~~~~~~---~~~~vivlnK~DL~~~  132 (307)
T 1t9h_A           82 PPICNVDQAVLVFSAVQPSFSTA---LLDRFLVLVEAN---DIQPIICITKMDLIED  132 (307)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHH---HHHHHHHHHHTT---TCEEEEEEECGGGCCC
T ss_pred             HHHHhCCEEEEEEeCCCCCCCHH---HHHHHHHHHHHC---CCCEEEEEECCccCch
Confidence            45788999999999998754332   222333222211   7799999999999876

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.93  E-value=0.00057  Score=44.48  Aligned_cols=23  Identities=26%  Similarity=0.661  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..+++.|++|+|||++++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999988754

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.93  E-value=0.00045  Score=49.32  Aligned_cols=23  Identities=30%  Similarity=0.444  Sum_probs=19.9

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .-.++++|++||||||+++.+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            35789999999999999998863

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.93  E-value=0.00067  Score=47.82  Aligned_cols=24  Identities=29%  Similarity=0.356  Sum_probs=21.2

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~   29 (156)
                      .+.+.|+|.|.+||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            346789999999999999999886

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.92  E-value=0.0018  Score=46.68  Aligned_cols=20  Identities=20%  Similarity=0.491  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChhHHHHHHhc
Q 031598           11 VIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~   30 (156)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998876

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.92  E-value=0.00051  Score=45.96  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ...|++.|.+||||||+++.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998874

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.92  E-value=0.00049  Score=47.49  Aligned_cols=23  Identities=35%  Similarity=0.605  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|++|+|||||++.+.+..
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999998653

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.91  E-value=0.00063  Score=48.59  Aligned_cols=24  Identities=21%  Similarity=0.236  Sum_probs=20.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +..-|+++|++|||||||++.|.+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999998875

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.90  E-value=0.00061  Score=44.78  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.90  E-value=0.00052  Score=47.55  Aligned_cols=24  Identities=25%  Similarity=0.441  Sum_probs=20.8

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ....|+++|++||||||+.+.+..
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999998864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.90  E-value=0.00062  Score=45.46  Aligned_cols=24  Identities=42%  Similarity=0.313  Sum_probs=20.5

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +..-|+++|++||||||+++.+.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999998864

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.90  E-value=0.00053  Score=47.60  Aligned_cols=21  Identities=29%  Similarity=0.351  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      -|+++|++||||||+...|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            479999999999999998864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.89  E-value=0.00049  Score=50.84  Aligned_cols=22  Identities=32%  Similarity=0.715  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .++++|++|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4689999999999999999865

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.89  E-value=0.0029  Score=45.41  Aligned_cols=24  Identities=33%  Similarity=0.527  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++.|++|+|||++++.+...
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            356899999999999999999755

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.87  E-value=0.00033  Score=50.94  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -++++|++|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            36899999999999999998765

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.86  E-value=0.00099  Score=45.25  Aligned_cols=21  Identities=29%  Similarity=0.578  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      -|+++|+|||||+|....|..
T Consensus        31 iI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999888763

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.86  E-value=0.00081  Score=45.30  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .+.|++.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998865

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.86  E-value=0.0005  Score=45.44  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..|++.|.+||||||+.+.|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988864

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.86  E-value=0.00056  Score=49.37  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|++|||||||++.+.+.-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.85  E-value=0.00049  Score=46.95  Aligned_cols=24  Identities=33%  Similarity=0.602  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..-|+|.|+.||||||+++.+.+.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            457899999999999999998765

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.84  E-value=0.00072  Score=46.84  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHh
Q 031598            9 LKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~   29 (156)
                      ..|+++|++||||||+++.+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999887

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.84  E-value=0.00057  Score=49.93  Aligned_cols=24  Identities=29%  Similarity=0.621  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -.++++|++|||||||++.+.+.-
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            368999999999999999998654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.83  E-value=0.00073  Score=43.64  Aligned_cols=21  Identities=19%  Similarity=0.483  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.83  E-value=0.00064  Score=49.89  Aligned_cols=23  Identities=17%  Similarity=0.452  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -.++|+|++||||||+++.+.+.
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999998753

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.83  E-value=0.00064  Score=48.49  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      --++++|+.||||||++..+.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4679999999999999998864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.82  E-value=0.00022  Score=47.85  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.82  E-value=0.00087  Score=46.33  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +.+.|+|.|.+||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.79  E-value=0.00094  Score=43.04  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      -.|++.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999988864

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.78  E-value=0.0023  Score=40.27  Aligned_cols=23  Identities=13%  Similarity=0.293  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..|++.|++|+|||++++.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            56899999999999999888754

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.78  E-value=0.0007  Score=48.85  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -.+++.|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.78  E-value=0.001  Score=43.43  Aligned_cols=23  Identities=30%  Similarity=0.286  Sum_probs=20.0

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ...|++.|.+||||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998865

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.78  E-value=0.00074  Score=45.58  Aligned_cols=21  Identities=24%  Similarity=0.540  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            468999999999999998873

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.77  E-value=0.00083  Score=43.94  Aligned_cols=21  Identities=24%  Similarity=0.547  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999988864

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.77  E-value=0.00075  Score=47.30  Aligned_cols=23  Identities=35%  Similarity=0.605  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|++|+|||||++.+.+.-
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCcChHHHHHHHHHHHc
Confidence            38999999999999999998653

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.76  E-value=0.00074  Score=50.33  Aligned_cols=22  Identities=18%  Similarity=0.471  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -++|+|+.||||||+++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            5799999999999999998864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.75  E-value=0.00034  Score=51.02  Aligned_cols=23  Identities=39%  Similarity=0.549  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999999765

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.72  E-value=0.00099  Score=46.03  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++.|++|+||||+++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999999764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.71  E-value=0.0011  Score=47.77  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=20.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +.--++++|++||||||++..+.+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999998874

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.70  E-value=0.00083  Score=51.34  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++|+|+.||||||+++.+.+.-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999998654

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.69  E-value=0.0011  Score=45.56  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .+.|++.|++||||||+.+.+..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998863

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.69  E-value=0.00074  Score=43.82  Aligned_cols=24  Identities=42%  Similarity=0.620  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++.|++|+|||++++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999988754

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.68  E-value=0.057  Score=40.63  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=20.7

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHh
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~   29 (156)
                      ..+..-|.|+|+.++|||+|+|.|+
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCchhHHHHHHH
Confidence            3456777899999999999999654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.68  E-value=0.0011  Score=44.92  Aligned_cols=24  Identities=17%  Similarity=0.368  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++.|++|+|||++++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999988754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.67  E-value=0.0015  Score=44.58  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=21.1

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +..-|++.|++||||||+++.+...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467899999999999999988753

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.65  E-value=0.0011  Score=47.58  Aligned_cols=25  Identities=28%  Similarity=0.542  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .--++++|..|||||||++.+.+..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            3456899999999999999999664

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.64  E-value=0.0011  Score=43.29  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      -.+|+|+.|+||||++..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            358999999999999998854

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.62  E-value=0.0011  Score=48.43  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=19.9

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .--++++|+.||||||++..+.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            34679999999999999998864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.62  E-value=0.0011  Score=50.47  Aligned_cols=22  Identities=27%  Similarity=0.643  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      --++++|++||||||++..|.+
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHHH
Confidence            4679999999999999998864

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.61  E-value=0.00096  Score=50.34  Aligned_cols=23  Identities=39%  Similarity=0.534  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -.++|+|+.|||||||++.+.+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            35899999999999999998765

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.61  E-value=0.001  Score=46.18  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      -.|+++|++||||||+.+.+..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.60  E-value=0.0013  Score=43.61  Aligned_cols=23  Identities=35%  Similarity=0.496  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..+++.|++|+|||+|+..+.+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999988754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.60  E-value=0.0012  Score=44.28  Aligned_cols=21  Identities=29%  Similarity=0.180  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            469999999999999999986

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.59  E-value=0.001  Score=46.97  Aligned_cols=22  Identities=23%  Similarity=0.499  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -++++|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3689999999999999988643

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.59  E-value=0.0018  Score=45.85  Aligned_cols=24  Identities=33%  Similarity=0.560  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .-.+++.|++|+|||++++.+...
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHH
Confidence            357999999999999999988754

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.59  E-value=0.0012  Score=48.04  Aligned_cols=23  Identities=35%  Similarity=0.590  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      +++++|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            67999999999999999999875

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.58  E-value=0.0016  Score=43.73  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=19.8

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ...|++.|.+||||||+.+.+..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998764

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.58  E-value=0.0013  Score=44.84  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -++++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4689999999999999999873

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.57  E-value=0.0013  Score=46.43  Aligned_cols=22  Identities=18%  Similarity=0.525  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.52  E-value=0.0016  Score=46.13  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=20.6

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .....+++.|++|+|||++++.+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999986653

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.52  E-value=0.002  Score=42.88  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...|.+.|.+||||||+.+.|...
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            478999999999999999988654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.52  E-value=0.0022  Score=44.71  Aligned_cols=27  Identities=30%  Similarity=0.495  Sum_probs=23.0

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ......+++.|++|+|||++++.+...
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            345678999999999999999999864

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.51  E-value=0.0016  Score=46.19  Aligned_cols=25  Identities=28%  Similarity=0.267  Sum_probs=21.0

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .+..+++.|++|+|||++++.+...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456788899999999999998754

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.50  E-value=0.0012  Score=44.48  Aligned_cols=23  Identities=13%  Similarity=0.262  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -.+++.|++|+||||++.++.+.
T Consensus        59 n~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999888753

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.48  E-value=0.002  Score=46.64  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .-|+|.|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            46899999999999999988753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.48  E-value=0.0017  Score=45.78  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=21.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++.|++|+|||++++.+.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            468999999999999999999864

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.48  E-value=0.0017  Score=44.71  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++.|++|+|||++++.+.+.
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999999764

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.46  E-value=0.0016  Score=45.59  Aligned_cols=25  Identities=24%  Similarity=0.414  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ....+++.|++|+|||++++.+.+.
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3456999999999999999999765

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.46  E-value=0.0013  Score=45.77  Aligned_cols=26  Identities=23%  Similarity=0.371  Sum_probs=21.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .+...|+|.|.+||||||+++.|...
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            34578999999999999999888754

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.45  E-value=0.0016  Score=48.86  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      +++++|++|||||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            67999999999999999998765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.45  E-value=0.0018  Score=49.76  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998764

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.45  E-value=0.0016  Score=49.41  Aligned_cols=21  Identities=29%  Similarity=0.575  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      .++++|++|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            468999999999999998875

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.45  E-value=0.0017  Score=43.69  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      .+++.|++|+|||++++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.44  E-value=0.0016  Score=47.86  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      -.++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999885

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.40  E-value=0.0021  Score=40.50  Aligned_cols=26  Identities=19%  Similarity=0.215  Sum_probs=22.0

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      ....|++.|++|+|||++++.+....
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            34568999999999999999998654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.40  E-value=0.0019  Score=42.97  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .+++.|++|+|||++++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.39  E-value=0.003  Score=42.31  Aligned_cols=24  Identities=46%  Similarity=0.684  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      ..|+++|++|+|||+|...|..+-
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            568999999999999999998654

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.38  E-value=0.0018  Score=50.20  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|++|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            57999999999999999998764

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.37  E-value=0.002  Score=48.18  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=22.1

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ....|++.|+||+|||++++++.+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            3568999999999999999999865

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.37  E-value=0.0024  Score=40.66  Aligned_cols=19  Identities=37%  Similarity=0.786  Sum_probs=16.9

Q ss_pred             EEEEcCCCCChhHHHHHHh
Q 031598           11 VIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~   29 (156)
                      .+|+|+.|+||||++..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3899999999999999874

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.37  E-value=0.0021  Score=45.67  Aligned_cols=24  Identities=33%  Similarity=0.464  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++.|++|+|||++++.+.+.
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            356899999999999999999865

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.36  E-value=0.0021  Score=49.84  Aligned_cols=23  Identities=30%  Similarity=0.559  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|++|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.36  E-value=0.0031  Score=45.36  Aligned_cols=23  Identities=22%  Similarity=0.445  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..|+++|++||||||+...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988753

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=96.36  E-value=0.0025  Score=47.26  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=21.6

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHh
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~   29 (156)
                      ..+.+|++++|.+.|||||++..+.
T Consensus        37 ~~~~~klLLLG~geSGKSTi~KQmk   61 (402)
T 1azs_C           37 YRATHRLLLLGAGESGKSTIVKQMR   61 (402)
T ss_dssp             CTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred             hhccceEEEecCCCCchhhHHHHHH
Confidence            3457999999999999999998764

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.34  E-value=0.0022  Score=47.88  Aligned_cols=24  Identities=33%  Similarity=0.505  Sum_probs=21.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++.|+||+|||++++++.+.
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.34  E-value=0.002  Score=49.55  Aligned_cols=23  Identities=30%  Similarity=0.540  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -++++|+.|||||||++.+.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            46899999999999999998764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.32  E-value=0.0033  Score=44.97  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .-|+|+|++|||||||...+...
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHHh
Confidence            45789999999999999999754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.32  E-value=0.0019  Score=45.21  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      -++++|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            468999999999999998874

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.30  E-value=0.0021  Score=47.82  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..-|+++|.+||||||+.+.+...
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            356889999999999999998753

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.30  E-value=0.0027  Score=43.37  Aligned_cols=25  Identities=16%  Similarity=0.310  Sum_probs=21.1

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .+...|+++|.+||||||+.+.|..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999988764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.30  E-value=0.0031  Score=45.17  Aligned_cols=25  Identities=20%  Similarity=0.417  Sum_probs=21.8

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ....+++.|++|+|||++++.+.+.
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3467999999999999999999764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.0023  Score=49.94  Aligned_cols=24  Identities=21%  Similarity=0.454  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKF   33 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~   33 (156)
                      .++++|+.|+|||||++.+.+...
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            479999999999999999987643

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.29  E-value=0.0022  Score=49.94  Aligned_cols=23  Identities=35%  Similarity=0.585  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|++|||||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            67999999999999999998764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.0024  Score=47.82  Aligned_cols=25  Identities=28%  Similarity=0.393  Sum_probs=22.1

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ....|++.|+||+|||++++++.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3568999999999999999999865

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.28  E-value=0.0022  Score=45.82  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..+++.|++|+|||++++.+.+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999998754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.25  E-value=0.0024  Score=49.11  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999765

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.24  E-value=0.019  Score=40.92  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=17.4

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      +++-|++|+|||++++.+.+.
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            466677999999999999754

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.20  E-value=0.0034  Score=41.66  Aligned_cols=21  Identities=33%  Similarity=0.373  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.20  E-value=0.0027  Score=43.41  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=17.5

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +..-|++.|++||||||+++.+..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346689999999999999998864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.19  E-value=0.0029  Score=45.39  Aligned_cols=25  Identities=20%  Similarity=0.450  Sum_probs=21.8

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +...+++.|++|+|||++++.+.+.
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHHH
Confidence            3467999999999999999999865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.18  E-value=0.003  Score=49.29  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|+|||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            57999999999999999998764

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.18  E-value=0.0035  Score=42.90  Aligned_cols=24  Identities=29%  Similarity=0.513  Sum_probs=19.8

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..+++.++|++||||||+...|..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            357899999999999999988753

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.17  E-value=0.0029  Score=43.10  Aligned_cols=20  Identities=35%  Similarity=0.672  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChhHHHHHHh
Q 031598           10 KVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~   29 (156)
                      -+++.|++|+|||||+..+.
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            46899999999999987775

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.17  E-value=0.0033  Score=48.39  Aligned_cols=23  Identities=26%  Similarity=0.528  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999865

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.16  E-value=0.0018  Score=50.20  Aligned_cols=23  Identities=35%  Similarity=0.414  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|++|||||||++.+.+-.
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57899999999999999888654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.16  E-value=0.0026  Score=45.17  Aligned_cols=22  Identities=23%  Similarity=0.555  Sum_probs=19.1

Q ss_pred             eEEEEEEcCCCCChhHHHHHHh
Q 031598            8 LLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~   29 (156)
                      .-.++++|++|+||||++..+.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3478999999999999998875

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.15  E-value=0.0026  Score=46.07  Aligned_cols=24  Identities=29%  Similarity=0.475  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++.|++|+|||||++.+.+.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998754

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.14  E-value=0.0038  Score=42.73  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .-|++.|..||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            56899999999999999988743

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.12  E-value=0.0032  Score=44.41  Aligned_cols=24  Identities=25%  Similarity=0.559  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++.|++|+|||++++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.12  E-value=0.0032  Score=49.16  Aligned_cols=23  Identities=26%  Similarity=0.528  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|+|||||++.+.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999865

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.11  E-value=0.003  Score=45.48  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .+++.|++|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998765

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.10  E-value=0.0012  Score=46.18  Aligned_cols=57  Identities=16%  Similarity=0.070  Sum_probs=37.1

Q ss_pred             CCCccc-ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           64 TAGQER-FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        64 ~~g~~~-~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .||+.. ........++.+|+++.|+|+.+|.+....     .+. ++      +.|.++|+||+|+.+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll------~k~~iivlNK~DL~~~   61 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS------RKETIILLNKVDIADE   61 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT------TSEEEEEEECGGGSCH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc------CCCcEEEEECccCCCH
Confidence            466543 234556677899999999999998664321     111 11      6799999999999864

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.10  E-value=0.0027  Score=47.05  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=21.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +...|++.|+||+|||++++.+.+.
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHh
Confidence            3467999999999999999999865

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.10  E-value=0.0033  Score=44.89  Aligned_cols=23  Identities=22%  Similarity=0.483  Sum_probs=19.5

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .--++++|++|+||||++..+..
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHH
Confidence            34679999999999999988763

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.09  E-value=0.0025  Score=49.54  Aligned_cols=23  Identities=39%  Similarity=0.593  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|++|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            57999999999999999888654

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.08  E-value=0.0036  Score=45.51  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .+++.|++|+||||+++.+.+.-
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999988653

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.08  E-value=0.0046  Score=45.06  Aligned_cols=22  Identities=27%  Similarity=0.598  Sum_probs=19.2

Q ss_pred             eEEEEEEcCCCCChhHHHHHHh
Q 031598            8 LLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~   29 (156)
                      ..+|+++|++|+||||+...+.
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHH
Confidence            4689999999999999998664

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.06  E-value=0.0037  Score=45.72  Aligned_cols=19  Identities=32%  Similarity=0.615  Sum_probs=17.1

Q ss_pred             EEEEcCCCCChhHHHHHHh
Q 031598           11 VIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~   29 (156)
                      ++|+|+.|+||||+++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4699999999999999875

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.04  E-value=0.0036  Score=48.83  Aligned_cols=23  Identities=26%  Similarity=0.598  Sum_probs=20.7

Q ss_pred             EEEEcCCCCChhHHHHHHhcCCC
Q 031598           11 VIILGDSGVGKTSLMNQYVNKKF   33 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~~   33 (156)
                      ++++|+.|+|||||++.+.+...
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            68999999999999999987653

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.03  E-value=0.0056  Score=41.78  Aligned_cols=25  Identities=44%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHh
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~   29 (156)
                      ....++|++.|++|+||||+.-.+.
T Consensus         3 ~~g~l~I~~~~kgGvGKTt~a~~la   27 (228)
T 2r8r_A            3 ARGRLKVFLGAAPGVGKTYAMLQAA   27 (228)
T ss_dssp             CCCCEEEEEESSTTSSHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHH
Confidence            3456999999999999999966554

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.03  E-value=0.0043  Score=40.86  Aligned_cols=21  Identities=14%  Similarity=0.425  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      ++|+|.++||||+|..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999999855

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.02  E-value=0.0023  Score=45.35  Aligned_cols=22  Identities=18%  Similarity=0.439  Sum_probs=16.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +-|+|.|++||||||+.+.|..
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4599999999999999988753

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.02  E-value=0.0052  Score=41.50  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=20.4

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +..-|++.|.+||||||+++.+..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            346689999999999999998863

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.96  E-value=0.005  Score=40.34  Aligned_cols=24  Identities=25%  Similarity=0.588  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .-+++.|++|+||||+...|..+.
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            568999999999999999998654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.95  E-value=0.0037  Score=45.44  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -+.++|++|+|||||+..+....
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46899999999999999998653

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.94  E-value=0.0047  Score=44.26  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -|+|.|++|||||||...+...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            4789999999999999999754

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.93  E-value=0.0017  Score=45.05  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..+++.|++|+|||++++.+.+.
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            34889999999999999998754

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.92  E-value=0.0043  Score=44.99  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..+++.|++|+|||++++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.92  E-value=0.0043  Score=44.59  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .+++.|++|+||||+++.+.+.
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988754

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.91  E-value=0.0065  Score=43.94  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .-|+|+|+.|||||||...|...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998754

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.89  E-value=0.0039  Score=46.98  Aligned_cols=25  Identities=24%  Similarity=0.399  Sum_probs=22.1

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ....|++.|+||+|||+|++.+.+.
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhc
Confidence            4568999999999999999999864

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.89  E-value=0.0047  Score=46.10  Aligned_cols=24  Identities=38%  Similarity=0.506  Sum_probs=21.7

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...|++.|+||+|||++++++.+.
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCceECCCCchHHHHHHHHHHH
Confidence            467999999999999999999865

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.88  E-value=0.0038  Score=45.29  Aligned_cols=25  Identities=20%  Similarity=0.399  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ....+++.|++|+|||++++.+...
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999998754

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.87  E-value=0.0047  Score=44.93  Aligned_cols=24  Identities=21%  Similarity=0.433  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++.|++|+|||++++.+.+.
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCcHHHHHHHHHHH
Confidence            356999999999999999999864

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.86  E-value=0.0051  Score=46.47  Aligned_cols=24  Identities=25%  Similarity=0.556  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .-+++++|++|+|||++++.+...
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999988643

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.86  E-value=0.0048  Score=44.85  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ....+++.|++|+|||++++.+...
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999998754

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.86  E-value=0.0053  Score=43.79  Aligned_cols=24  Identities=25%  Similarity=0.511  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++.|++|+|||+|+..+.+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999988754

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.84  E-value=0.0072  Score=41.15  Aligned_cols=25  Identities=20%  Similarity=0.221  Sum_probs=20.9

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .+..-|++.|.+||||||+++.+..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999998763

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.83  E-value=0.0051  Score=44.74  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=21.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ....+++.|++|+|||++++.+...
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999754

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.81  E-value=0.0048  Score=46.24  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -.+++.|++|+|||||++.+.+.
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998754

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.81  E-value=0.0045  Score=45.20  Aligned_cols=24  Identities=21%  Similarity=0.495  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++.|++|+|||++++.+...
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	156
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-37
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-35
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	6e-35
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-33
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	4e-31
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	6e-31
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-28
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	9e-28
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-27
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	8e-27
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-26
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	1e-26
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	8e-26
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	8e-25
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-24
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-24
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	3e-23
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-23
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	3e-22
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	4e-22
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	6e-22
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	8e-22
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-21
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	3e-21
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	3e-21
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	1e-20
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-20
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-20
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	3e-19
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	6e-19
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-18
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-18
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-18
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-18
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	7e-18
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	8e-17
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-16
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	3e-16
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	6e-16
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-15
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	3e-15
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	4e-15
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	5e-15
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	6e-15
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	7e-15
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	8e-15
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-14
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-14
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-14
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-13
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	3e-12
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-12
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	4e-11
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	3e-10
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-09
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-09
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-09
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	3e-07
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-06
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	6e-06
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	9e-06
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	1e-04
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	4e-04
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	6e-04
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	7e-04
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	7e-04
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	0.001
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.001
d1htwa_	158	c.37.1.18 (A:) Hypothetical protein HI0065 {Haemop	0.001
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	0.002
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	0.004

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  124 bits (312), Expect = 1e-37
 Identities = 44/109 (40%), Positives = 69/109 (63%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           +++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQIWDTAG
Sbjct: 1   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 60

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP 115
           QERF+++  A+YRGA   +LVYD+   ++F N+  W +     A+    
Sbjct: 61  QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ 109

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  119 bits (299), Expect = 2e-35
 Identities = 47/118 (39%), Positives = 75/118 (63%), Gaps = 4/118 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN 125
           ERF+++  A+YRGA   +LVYD+ + KSFDN+ NW              +   ++LGN
Sbjct: 66  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH----ASADVEKMILGN 119

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  118 bits (296), Expect = 6e-35
 Identities = 44/119 (36%), Positives = 75/119 (63%), Gaps = 4/119 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           ERF+++  ++YRG+   ++VYDV   +SF+ +  W +E               +++GNK
Sbjct: 66  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID----RYATSTVLKLLVGNK 120

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 2e-33
 Identities = 51/135 (37%), Positives = 74/135 (54%), Gaps = 4/135 (2%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G++GVGKT L+ ++    F     ATIG DF+ K V+       LQIWDTAGQ
Sbjct: 5   LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YR A+  +L YD+   +SF  L  W  E    A     +    V++GNKI
Sbjct: 65  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA----SNKVITVLVGNKI 120

Query: 128 DVDGGNSRVVCFGEE 142
           D+           EE
Sbjct: 121 DLAERREVSQQRAEE 135

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  108 bits (269), Expect = 4e-31
 Identities = 39/105 (37%), Positives = 68/105 (64%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K +   D+   LQIWDTAGQ
Sbjct: 5   MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASP 112
           ER++++  A+YRGA   +L+YD+ + +SF+ + +W  +    +  
Sbjct: 65  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD 109

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 6e-31
 Identities = 47/121 (38%), Positives = 79/121 (65%), Gaps = 4/121 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 4   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 63

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++ +  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK 
Sbjct: 64  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 119

Query: 128 D 128
           D
Sbjct: 120 D 120

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 1e-28
 Identities = 44/106 (41%), Positives = 65/106 (61%), Gaps = 1/106 (0%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
             KV+++GDSGVGKT L+ ++ +  F +  + +T+G DF  K +  +     LQ+WDTAG
Sbjct: 6   AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASP 112
           QERF+S+  A+YR A   +L+YDV +  SFDN+  W  E    A  
Sbjct: 66  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH 111

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.5 bits (247), Expect = 9e-28
 Identities = 45/97 (46%), Positives = 64/97 (65%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T LK++I+G+SGVGK+SL+ ++ +  F  +  ATIG DF  K +  +     L IWDTAG
Sbjct: 6   TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWR 103
           QERF++L  ++YRGA   +LVYDV    +F  L+NW 
Sbjct: 66  QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWL 102

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (245), Expect = 1e-27
 Identities = 45/123 (36%), Positives = 76/123 (61%), Gaps = 4/123 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K II+GD GVGK+ L++Q+  KKF      TIG +F T+ ++   +   LQIWDTAGQ
Sbjct: 4   IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 63

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYD+    ++++L++W  +           N   +++GNK 
Sbjct: 64  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT----NPNTVIILIGNKA 119

Query: 128 DVD 130
           D++
Sbjct: 120 DLE 122

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.3 bits (241), Expect = 8e-27
 Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 13/145 (8%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL----------F 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +            
Sbjct: 5   LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 64

Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +       +  +N
Sbjct: 65  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN---AYCEN 121

Query: 118 FPFVVLGNKIDVDGGNSRVVCFGEE 142
              V++GNK D+            E
Sbjct: 122 PDIVLIGNKADLPDQREVNERQARE 146

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.9 bits (240), Expect = 1e-26
 Identities = 44/118 (37%), Positives = 72/118 (61%), Gaps = 4/118 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G++G GK+ L++Q++ KKF +    TIG +F +K +    +   LQIWDTAGQ
Sbjct: 5   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN 125
           ERF+S+  ++YRGA   +LVYD+ S ++++ L NW  +           N   ++ GN
Sbjct: 65  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA----RMLASQNIVIILCGN 118

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.6 bits (239), Expect = 1e-26
 Identities = 69/124 (55%), Positives = 94/124 (75%)

Query: 5   RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           + +L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDT
Sbjct: 3   KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 62

Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
           AGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LG
Sbjct: 63  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 122

Query: 125 NKID 128
           NKID
Sbjct: 123 NKID 126

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 94.8 bits (234), Expect = 8e-26
 Identities = 103/121 (85%), Positives = 112/121 (92%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPFVVLGNKI
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 128 D 128
           D
Sbjct: 122 D 122

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (228), Expect = 8e-25
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 5/140 (3%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  D     V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+       +           PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH----HCPKTPFLLVGTQID 118

Query: 129 VDGGNSRVVCFGEEGSSMVC 148
           +    S +    +     + 
Sbjct: 119 LRDDPSTIEKLAKNKQKPIT 138

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.1 bits (225), Expect = 2e-24
 Identities = 51/134 (38%), Positives = 81/134 (60%), Gaps = 4/134 (2%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V  + +   LQIWDTAGQ
Sbjct: 3   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E F+S+  ++YRGA   +LVYD+   ++F++L +W E+    +S     N   +++GNK 
Sbjct: 63  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKS 118

Query: 128 DVDGGNSRVVCFGE 141
           D++         GE
Sbjct: 119 DLESRRDVKREEGE 132

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.9 bits (224), Expect = 2e-24
 Identities = 88/124 (70%), Positives = 108/124 (87%), Gaps = 1/124 (0%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAG 66
           +LKVIILGDSGVGKTSLM++YVN K+S QYKATIGADFLTKEV  +  ++ T+Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERFQSLGVAFYRGADCCVLVYDV +  SF+N+ +WR+EFL+ A+ + P+ FPFV+LGNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 127 IDVD 130
           ID +
Sbjct: 122 IDAE 125

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (216), Expect = 3e-23
 Identities = 43/96 (44%), Positives = 63/96 (65%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             KV++LG+  VGKTSL+ +Y   KF++++  T+GA FLTK++    +   L IWDTAGQ
Sbjct: 3   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWR 103
           ERF +LG  +YR ++  +LVYD+    SF  + NW 
Sbjct: 63  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWV 98

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (216), Expect = 3e-23
 Identities = 48/119 (40%), Positives = 74/119 (62%), Gaps = 4/119 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQER
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           F+SL  ++ R +   V+VYD+ ++ SF     W ++   +       +   +++GNK D
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTD 116

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (210), Expect = 3e-22
 Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 5/143 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           +LK +++GD  VGKT L+  Y N  F  +Y  T+  D     V    + + L ++DTAGQ
Sbjct: 9   MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQ 67

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E +  L    Y   D  ++ + V +  SF N+       L + +P    N PF+++G +I
Sbjct: 68  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP----NVPFLLIGTQI 123

Query: 128 DVDGGNSRVVCFGEEGSSMVCLQ 150
           D+      +    +     +C++
Sbjct: 124 DLRDDPKTLARLNDMKEKPICVE 146

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (209), Expect = 4e-22
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 5/121 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + + S  SF+N+       +    P    N P +++G K+D
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLD 120

Query: 129 V 129
           +
Sbjct: 121 L 121

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (207), Expect = 6e-22
 Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 4/119 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG  GVGK++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           F S+   + +     +LVY + + +SF ++   R++ +        +  P +++GNK+D
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK---RYEKVPVILVGNKVD 119

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.9 bits (206), Expect = 8e-22
 Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 4/142 (2%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T +K+++LG++ VGK+S++ ++V+  F+   + TIGA FLT+ V   +     +IWDTAG
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF SL   +YR A   ++VYDV   +SF    +W +E   Q       +    ++GNK
Sbjct: 62  QERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ----ASKDIIIALVGNK 117

Query: 127 IDVDGGNSRVVCFGEEGSSMVC 148
           ID+           EEG  +  
Sbjct: 118 IDMLQEGGERKVAREEGEKLAE 139

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 83.1 bits (204), Expect = 2e-21
 Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 4/119 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T   D   K+V  +     + I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+++GNK
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 118

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.4 bits (202), Expect = 3e-21
 Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 4/136 (2%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K+I++GDS VGKT L  ++   +F ++ +ATIG DF  + V  +     +Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 68  ERFQSLGV-AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           ERF+   V  +YR     V VYD+ +M SF +L  W EE          ++ P +++GNK
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL---LANDIPRILVGNK 118

Query: 127 IDVDGGNSRVVCFGEE 142
            D+           ++
Sbjct: 119 CDLRSAIQVPTDLAQK 134

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (202), Expect = 3e-21
 Identities = 47/106 (44%), Positives = 70/106 (66%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP 115
           + SL   +YRGA   ++VYD+ + +SF    NW +E   QASP+  
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 113

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.6 bits (200), Expect = 1e-20
 Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 1/125 (0%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
            V+ +G    GKT L  + +  ++ +    +I       +V          I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
              L   F   A   V V D  + +            ++  S +  ++   ++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 130 DGGNS 134
               S
Sbjct: 121 AMAKS 125

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (196), Expect = 3e-20
 Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 4/119 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI   +  + V        L I DTAGQE 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVID-GETCLLDILDTAGQEE 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK---DSDDVPMVLVGNKCD 119

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (196), Expect = 3e-20
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 5/120 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++I+GD   GKT L+      +F   Y  T+  +    +++ + +   L +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + ++S  S +N+       +    P    N P +++GNK D
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKD 117

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 3e-19
 Identities = 39/119 (32%), Positives = 68/119 (57%), Gaps = 4/119 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTEQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           F ++   + +      LVY + +  +F++L + RE+ L      D ++ P +++GNK D
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV---KDTEDVPMILVGNKCD 119

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.6 bits (187), Expect = 6e-19
 Identities = 46/104 (44%), Positives = 65/104 (62%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S+M ++V   F      TIGA F+TK VQ+++ L    IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASP 112
           RF++L   +YRG+   ++VYD+   ++F  L NW  E      P
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP 108

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.9 bits (185), Expect = 1e-18
 Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 5/120 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GDS  GKT+L++ +    F   Y  T+  +  T   + + +   L +WDT+G  
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSP 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            + ++    Y  +D  ++ +D++  ++ D++    +  + +  P    N   +++G K D
Sbjct: 62  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSD 117

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.1 bits (183), Expect = 2e-18
 Identities = 41/104 (39%), Positives = 68/104 (65%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K++++G+  VGK+S++ +Y    F+  YK TIG DFL +++Q  D    L +WDTAGQE
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASP 112
            F ++  A+YRGA  CVLV+     +SF+ +++WRE+ + +   
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD 106

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 74.7 bits (182), Expect = 2e-18
 Identities = 18/131 (13%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    +       T            E +  +  +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQD 55

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + + L   +++     + V D N  +  +         L +    D      V    +  
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA--VLLVFANKQDL 113

Query: 129 VDGGNSRVVCF 139
            +  N+  +  
Sbjct: 114 PNAMNAAEITD 124

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (182), Expect = 3e-18
 Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +++++G  GVGK++L  Q++   F   Y  TI  D  TK+   +DR   L I DTAGQE 
Sbjct: 7   RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEE 65

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + R  +  +LV+ V    SF+ +  ++ + L      D D FP +++GNK D+
Sbjct: 66  FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQIL---RVKDRDEFPMILIGNKADL 122

Query: 130 D 130
           D
Sbjct: 123 D 123

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (180), Expect = 7e-18
 Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             K++++G  GVGK++L  Q++   F + Y      D  TK    +     L I DTAGQ
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E F ++   + R     +LV+ +N  +SF+ +     + L      D D+FP V++GNK 
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFPVVLVGNKA 121

Query: 128 D 128
           D
Sbjct: 122 D 122

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.9 bits (175), Expect = 8e-17
 Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 14/128 (10%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L+K+++LG    GK++ + Q    +  +    T G         FE +    ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQ 54

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWR-------EEFLIQASPSDPDNFPF 120
              +      +      + +   +        +            F    +     N   
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 121 VVLGNKID 128
           ++  NK D
Sbjct: 115 ILFLNKTD 122

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.9 bits (173), Expect = 2e-16
 Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 15/130 (11%)

Query: 6   RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
           R   ++++LG    GK++++ Q            T G      + Q +       ++D  
Sbjct: 4   RATHRLLLLGAGESGKSTIVKQMRI----LHVVLTSG--IFETKFQVDK--VNFHMFDVG 55

Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWR-------EEFLIQASPSDPDNF 118
           GQ   +   +  +      + V   +S       +N           F    +       
Sbjct: 56  GQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI 115

Query: 119 PFVVLGNKID 128
             ++  NK D
Sbjct: 116 SVILFLNKQD 125

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.7 bits (169), Expect = 3e-16
 Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 4/119 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD GVGK++L  Q+  K F   Y  TI  D   K  + +++   L + DTAGQE 
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEE 64

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           F ++   + R  D  ++VY V    SF++++ + +  L      D ++FP +++ NK+D
Sbjct: 65  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILVANKVD 120

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 68.5 bits (166), Expect = 6e-16
 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 8/135 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++  +        TI           E R F L IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +S    ++   D  + V D    +   +     +  L++           ++  NK D
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE---RLAGATLLIFANKQD 114

Query: 129 VDGGNSRVVCFGEEG 143
           + G  S         
Sbjct: 115 LPGALSCNAIQEALE 129

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (162), Expect = 3e-15
 Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 5/119 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE+
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           F  L   +Y  A C ++++DV S  ++ N+ NW  + +        +N P V+ GNK+D
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 118

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.6 bits (161), Expect = 3e-15
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LG    GKT+L++   N + +     T+   +     +          +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLA-----TLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
            + L   ++   +  V + D    + FD      +     A   +  + PFV+LGNK
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA---ELKDVPFVILGNK 110

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.9 bits (162), Expect = 4e-15
 Identities = 17/127 (13%), Positives = 43/127 (33%), Gaps = 16/127 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+++LG    GK++++ Q      +       G      E  F  +    +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEA-----GTG----IVETHFTFKDLHFKMFDVGGQR 53

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDN-------LNNWREEFLIQASPSDPDNFPFV 121
             +   +  + G    +    ++              ++   + F    +     +   +
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 122 VLGNKID 128
           +  NK D
Sbjct: 114 LFLNKKD 120

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 5e-15
 Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 2/112 (1%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+ I G +GVGK++L+ +++ K+F  +Y  T+ + +   +   +D + +++I DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQE 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
                     R  +  VLVYD+    SF+ +   +        P +      
Sbjct: 62  DTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV 112

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 66.5 bits (161), Expect = 6e-15
 Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 8/135 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+++ILG  G GKT+++ +    +     K TIG +  T   +       L +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLSYKN----LKLNVWDLGGQT 72

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +     +Y      + V D          +      L +    +  +   +V  NK D
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE---ELQDAALLVFANKQD 129

Query: 129 VDGGNSRVVCFGEEG 143
             G  S      E  
Sbjct: 130 QPGALSASEVSKELN 144

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.5 bits (161), Expect = 7e-15
 Identities = 14/98 (14%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK+++LG    GK++ + Q      S     T G         F+ +    ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYP----FDLQSVIFRMVDVGGQR 56

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEF 106
             +   +  +      + +  ++        ++     
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM 94

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 8e-15
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V + G  GVGK+SL+ ++V   F   Y  T+   +          + TLQI DT G  +
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCD-KSICTLQITDTTGSHQ 62

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++           +LVY + S +S + L        I     D ++ P +++GNK D 
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIY--EQICEIKGDVESIPIMLVGNKCDE 120

Query: 130 D 130
            
Sbjct: 121 S 121

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 1e-14
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 7/135 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ ++G    GKT+ +N   + +F+     T+G +      +      T+++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQP 58

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+S+   + RG    V + D    +  +   N     L +         P +VLGNK D
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP---QLQGIPVLVLGNKRD 115

Query: 129 VDGGNSRVVCFGEEG 143
           + G         +  
Sbjct: 116 LPGALDEKELIEKMN 130

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 2e-14
 Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++++LG    GKT+++ +    +       T+G +  T   +         +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTYKN----VKFNVWDVGGQD 67

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           + + L   +Y G    + V D       D             +  +  +   ++  NK 
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQE---LHRIINDREMRDAIILIFANKQ 123

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 2e-14
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++ +LGD+  GK+SL+++++   +         ++   KE+  + +   + I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +     F   AD  + V+ +    SF  ++      L              ++G +  
Sbjct: 64  DAK-----FSGWADAVIFVFSLEDENSFQAVSRLH-GQLSSLRGEGRGGLALALVGTQDR 117

Query: 129 VDGGNSR 135
           +   + R
Sbjct: 118 ISASSPR 124

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 61.9 bits (149), Expect = 3e-13
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++++LG    GKT+L+ Q  ++  S+    T G +  + + Q     F L +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKSVQSQG----FKLNVWDIGGQR 71

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + +    +++   D  + V D    K F+       E L +         P ++  NK D
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEE---KLSCVPVLIFANKQD 128

Query: 129 VDGGNSRVVCFGEEG 143
           +              
Sbjct: 129 LLTAAPASEIAEGLN 143

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.6 bits (143), Expect = 3e-12
 Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 7/127 (5%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           +II G    GKTSL+            + T+ +        ++    TL  +    + R+
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61

Query: 71  QS---LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           +    L            +V      K       +  + L     S  +    ++  NK 
Sbjct: 62  KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 121

Query: 128 DVDGGNS 134
           ++     
Sbjct: 122 ELFTARP 128

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 5e-12
 Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 8/135 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++ILG  G GKT+++ +    +       T              +    Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVV-----TTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +     +Y   D  + V D           +     L +    +      VV  NK D
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE---EELRKAILVVFANKQD 117

Query: 129 VDGGNSRVVCFGEEG 143
           ++   +        G
Sbjct: 118 MEQAMTSSEMANSLG 132

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 4e-11
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 1/110 (0%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+ ILG   VGK+SL  Q+V  +F + Y  TI  +  TK +    + + LQ+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE-NTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNF 118
            +      +    +  +LVY V S+KSF+ +     + L           
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM 113

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 3e-10
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 8/126 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            KVII+G    GKT+++ Q+   +  +           +   +         +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTS-----PTIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +S    +Y   +  ++V D    +          + L      D      ++  NK D
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH---EDLRKAGLLIFANKQD 127

Query: 129 VDGGNS 134
           V    +
Sbjct: 128 VKECMT 133

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 52.4 bits (124), Expect = 1e-09
 Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 8/120 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG    GKT+L++   + +                  +      T   +D  G  
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH-----PTSEELTIAGMTFTTFDLGGHI 68

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + + +   +    +  V + D    +         +  +         N P ++LGNKID
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD---ETIANVPILILGNKID 125

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 1e-09
 Identities = 20/122 (16%), Positives = 45/122 (36%), Gaps = 1/122 (0%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  +V+++G+ GVGK++L N +     S      +  +   +     D      I     
Sbjct: 2   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 61

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           + + ++  +  +           V S+    +     E  +        ++ P +++GNK
Sbjct: 62  ENKGENEWLHDHCMQVGDA-YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 127 ID 128
            D
Sbjct: 121 SD 122

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-09
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG  GVGK++L   +   +   +           + +  +    +L ++D   Q+ 
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 102
            + L        D  V+VY V    SF+  +  
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL 93

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (109), Expect = 3e-07
 Identities = 23/132 (17%), Positives = 39/132 (29%), Gaps = 7/132 (5%)

Query: 6   RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV--QFEDRLFTLQIWD 63
            ++L V + G++G GK+S +N         +  A  G   +T E        +  +  WD
Sbjct: 54  SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 113

Query: 64  TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL 123
             G          +          YD   + S         +              F  +
Sbjct: 114 LPGIGSTNFPPDTYL--EKMKFYEYDFFIIISATRFKKNDIDIAKAI---SMMKKEFYFV 168

Query: 124 GNKIDVDGGNSR 135
             K+D D  N  
Sbjct: 169 RTKVDSDITNEA 180

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 20/122 (16%), Positives = 32/122 (26%), Gaps = 5/122 (4%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ--- 67
           V ++G    GK+SL+                        V          + D  G    
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP-NLGVVEVSEEERFTLADIPGIIEG 62

Query: 68  -ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
               + LG+ F R      ++  V                 + A        P +V  NK
Sbjct: 63  ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNK 122

Query: 127 ID 128
           +D
Sbjct: 123 VD 124

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (96), Expect = 6e-06
 Identities = 17/101 (16%), Positives = 27/101 (26%), Gaps = 1/101 (0%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +KV+I G    GK+SL+N    ++ +       G                L I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQ 109
                            +      +   D       +    
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEI 101

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.1 bits (95), Expect = 9e-06
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+++I+G   VGK++L+N+ +N+  +       G        +   R    +I DTAG  
Sbjct: 1   LRMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVIRGILFRIVDTAGVR 59

Query: 69  RFQSLGVAFY---------RGADCCVLVYDVNSMKSFDNLNNW 102
              +  V              AD  + V D +S    ++    
Sbjct: 60  SETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKIL 102

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.2 bits (87), Expect = 1e-04
 Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 2/124 (1%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW--DTA 65
           L ++ + G S VGK+S +N  +N+K   +  +  G           D L  + +     A
Sbjct: 23  LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFA 82

Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN 125
              + +                     ++  D  +    + +           P +V+  
Sbjct: 83  KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIAT 142

Query: 126 KIDV 129
           K D 
Sbjct: 143 KADK 146

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.6 bits (83), Expect = 4e-04
 Identities = 27/145 (18%), Positives = 44/145 (30%), Gaps = 12/145 (8%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           +I  G S VGK++L+ +   KK     +  +    +  E +    +         G  + 
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62

Query: 71  ---------QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD---PDNF 118
                            +  D  VLV D  +          R E  I           + 
Sbjct: 63  VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122

Query: 119 PFVVLGNKIDVDGGNSRVVCFGEEG 143
           P +V  NK+D       V+ F  E 
Sbjct: 123 PTIVAVNKLDKIKNVQEVINFLAEK 147

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 36.3 bits (83), Expect = 6e-04
 Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 10/136 (7%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +       L ++++G  GVGK+S +N  + ++  +              V      FTL 
Sbjct: 25  LKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRAGFTLN 83

Query: 61  IWDTAG--------QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASP 112
           I DT G              +           +L  D       DNL+    + +  +  
Sbjct: 84  IIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFG 143

Query: 113 SDPDNFPFVVLGNKID 128
               N   +V      
Sbjct: 144 KGIWN-KAIVALTHAQ 158

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (82), Expect = 7e-04
 Identities = 15/76 (19%), Positives = 27/76 (35%)

Query: 9  LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
          ++V   G S  GK+S +N   N+K   +   T G   L    +  D    + +      E
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76

Query: 69 RFQSLGVAFYRGADCC 84
            + +   + R     
Sbjct: 77 VPEEMKRKWQRALGEY 92

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 35.9 bits (81), Expect = 7e-04
 Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 1/92 (1%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           V I+G   VGK++L+N  +  K +                   +    +   DT G  + 
Sbjct: 8   VAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 66

Query: 71  QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 102
                 F        L      +   D  +  
Sbjct: 67  MDALGEFMDQEVYEALADVNAVVWVVDLRHPP 98

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           V ++G   VGK++L++   + K     Y  T     L      + R F   + D  G   
Sbjct: 4   VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFV--MADLPGLIE 61

Query: 70  FQS----LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQ 109
                  LG  F R  +   ++  V  M   +  + + +   I 
Sbjct: 62  GAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTIN 105

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 6  RTLLKVIILGDSGVGKTSLMNQYVNKKFS 34
             +KV I+G   VGK++L N  +NK+ +
Sbjct: 6  TDAIKVAIVGRPNVGKSTLFNAILNKERA 34

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Length = 158

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 11  VIIL-GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           ++ L GD G GKT+L    +          +     + +       ++   ++  A  E 
Sbjct: 35  MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEE 94

Query: 70  FQSLGVAFYRGADCCVLV 87
            + +G+  Y   D   L+
Sbjct: 95  LEFMGIRDYFNTDSICLI 112

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 20/129 (15%), Positives = 44/129 (34%), Gaps = 1/129 (0%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           + I+G   VGK++L+N+ + +K S   +           +  E     +   DT G    
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY-VDTPGLHME 66

Query: 71  QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130
           +   +           + DV  +        W  +  +  +       P ++  NK+D  
Sbjct: 67  EKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNV 126

Query: 131 GGNSRVVCF 139
              + ++  
Sbjct: 127 QEKADLLPH 135

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.0 bits (76), Expect = 0.004
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 11 VIILGDSGVGKTSLMNQYVNKKFS 34
          V+I+G   VGK++L N+ V KK +
Sbjct: 3  VLIVGRPNVGKSTLFNKLVKKKKA 26

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.97
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.97
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.96
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.96
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.96
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.96
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.95
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.95
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.95
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.95
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.94
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.94
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.93
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.92
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.91
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.91
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.87
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.85
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.85
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.84
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.83
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.83
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.82
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.81
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.81
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.79
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.79
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.79
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.76
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.76
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.74
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.74
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.73
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.73
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.73
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.72
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.71
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.71
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.71
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.69
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.69
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.68
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.65
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.65
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.64
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.64
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.64
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.62
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.61
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.57
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.55
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.42
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.29
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.27
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.12
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.1
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.06
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.98
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.87
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.78
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.58
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.52
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.48
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.38
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.11
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.04
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.92
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.9
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.88
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.84
d1okkd2	207	GTPase domain of the signal recognition particle r	97.82
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.8
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.76
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.73
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.72
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.7
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.7
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.7
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.68
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.67
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.64
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.62
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.6
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.57
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.55
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.51
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.5
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.5
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.49
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.46
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.41
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.4
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.4
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.4
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.39
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.39
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.38
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.38
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.37
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.36
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.36
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.36
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.34
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.34
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.33
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.33
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.33
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.32
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.32
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.3
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.3
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.29
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.28
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.27
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.27
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.25
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.25
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.23
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.22
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.22
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.21
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.19
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.17
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.15
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.13
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.12
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.11
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.11
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.1
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.1
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.07
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.06
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.06
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.05
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.99
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.99
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.99
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.96
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.95
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.91
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.9
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.89
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.89
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.84
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.79
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.75
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.72
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.71
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.71
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.71
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.7
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.66
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.65
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.64
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.63
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.61
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.6
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.55
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.53
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.5
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.5
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.41
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.35
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.35
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.33
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.33
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.32
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.28
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.26
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.22
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.17
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.17
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.17
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	96.11
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.11
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	96.11
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.09
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.08
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.05
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.04
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.02
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.01
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.0
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.98
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.97
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.96
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.86
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.76
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.73
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.66
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.66
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.63
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.59
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.57
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.56
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.56
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.54
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.48
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.46
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.31
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.23
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.95
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.94
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.89
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.87
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.82
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.82
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.77
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.49
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.48
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.45
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.38
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	94.35
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.67
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.59
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.28
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.18
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	92.54
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	92.33
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.05
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.95
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	91.87
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	91.65
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	91.64
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	91.61
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.42
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.31
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	91.29
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.24
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	90.95
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.52
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.07
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	89.74
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.72
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	89.27
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	88.5
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.29
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	88.01
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	87.88
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	87.63
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	87.39
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	85.44
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	85.31
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	84.7
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	83.75
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	83.65
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	83.3
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	83.29
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	82.88
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	81.08

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.1e-30  Score=168.37  Aligned_cols=131  Identities=32%  Similarity=0.519  Sum_probs=114.9

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|...+..+...+++.+|+++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            4568999999999999999999999988888888887664 566778999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccc
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEE  142 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~  142 (156)
                      +|||++++++|..+..|+..+.......   ++|+++|+||+|+..+  ++++.++.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilvgnK~Dl~~~--r~v~~~~~  132 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDLHME--RVISYEEG  132 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSS---CCCEEEEEECTTCGGG--CCSCHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhccccc---ccceeeeccccccccc--cchhHHHH
Confidence            9999999999999999999998776543   7899999999999876  55665544

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.5e-30  Score=170.10  Aligned_cols=128  Identities=37%  Similarity=0.767  Sum_probs=115.5

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .+||+++|++|+|||||+++|.+..+...+.++.+.+.........+..+.+.+||++|+..+...+..+++.++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            47999999999999999999999998888889888888888888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccc
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEE  142 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~  142 (156)
                      ||++++.+|+.+..|+..+.....     ++|+++||||+|+.++  +++..++.
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~-----~~~iilVgnK~Dl~~~--~~v~~~~~  129 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLLDD--SCIKNEEA  129 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHC-----SCCEEEEEECGGGGGG--CSSCHHHH
T ss_pred             EeccchhhhhhcccccccccccCC-----CceEEEeeccCCcccc--eeeeehhh
Confidence            999999999999999999987765     7899999999999876  55555543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.5e-30  Score=169.20  Aligned_cols=132  Identities=31%  Similarity=0.508  Sum_probs=113.7

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      ++.+.+||+++|++|||||||+++|.+..+...+.++.. +.....+.+++..+.+.+||++|++.+...+..+++.+|+
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            456679999999999999999999999998887777754 4556677889999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE  141 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e  141 (156)
                      +++|||.+++.+|..+..|+..+.+.....   +.|+++||||+|+.++  +....++
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~p~ilvgnK~Dl~~~--~~~~~~~  133 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRD---DFPVVLVGNKADLESQ--RQVPRSE  133 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSS---CCCEEEEEECGGGGGG--CCSCHHH
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccC---CCceEEEEEeechhhc--cccchhh
Confidence            999999999999999999999987765433   7899999999999876  4444443

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.7e-30  Score=167.22  Aligned_cols=140  Identities=27%  Similarity=0.505  Sum_probs=118.4

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.+||+++|+++||||||++++.+..+.+.+.++.+..+ ......++..+.+.+||++|++.+..++..+++.+|+++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l   80 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   80 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEE
Confidence            3579999999999999999999999988888788776543 555677899999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhccc
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKY  153 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~  153 (156)
                      +|||++++.+|..+..|+..+.+.....   +.|+++|+||+|+.+.  ++++.++...  ++..++.
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~---~~p~ilvgnK~Dl~~~--~~v~~e~~~~--~~~~~~~  141 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRE---SFPMILVANKVDLMHL--RKVTRDQGKE--MATKYNI  141 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSS---CCCEEEEEECTTCSTT--CCSCHHHHHH--HHHHHTC
T ss_pred             EecccccchhhhccchhhHHHHhhcccc---CccEEEEecccchhhh--ceeehhhHHH--HHHHcCC
Confidence            9999999999999999999988775433   7899999999999987  6666655433  4444444

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=6.8e-30  Score=167.69  Aligned_cols=130  Identities=36%  Similarity=0.703  Sum_probs=114.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ...+||+++|++|||||||+++|.+..+...+.++.+.+.....+......+.+++|||||++.+..++..+++.+|+++
T Consensus         3 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i   82 (169)
T d3raba_           3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   82 (169)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred             CeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            35799999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE  141 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e  141 (156)
                      +|||.+++.++..+..|+..+......    ..|+++|+||+|+.+.  +++..++
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iivv~nK~D~~~~--~~v~~~~  132 (169)
T d3raba_          83 LMYDITNEESFNAVQDWSTQIKTYSWD----NAQVLLVGNKCDMEDE--RVVSSER  132 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCS----CCEEEEEEECTTCGGG--CCSCHHH
T ss_pred             EEEECccchhhhhhhhhhhhhhcccCC----cceEEEEEeecccccc--cccchhh
Confidence            999999999999999888877655432    7899999999999876  4444444

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.7e-30  Score=168.01  Aligned_cols=130  Identities=40%  Similarity=0.676  Sum_probs=115.3

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ...+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+++++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i   82 (171)
T d2ew1a1           3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI   82 (171)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence            35699999999999999999999999988888888888888888899999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE  141 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e  141 (156)
                      +|||.+++.++..+..|+..+.+....    ..|+++|+||+|+.++  +++..++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~~~ilvgnK~D~~~~--~~v~~~~  132 (171)
T d2ew1a1          83 LTYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKIDLAER--REVSQQR  132 (171)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CSSCHHH
T ss_pred             Eeeecccchhhhhhhhhhhhhcccccc----cccEEEEEeecccccc--cchhhhH
Confidence            999999999999999999888765443    7899999999999865  4444443

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.9e-30  Score=168.04  Aligned_cols=139  Identities=38%  Similarity=0.661  Sum_probs=113.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      ..+||+++|++|||||||+++|.+..+...+.++.+.+........++..+.+.+||++|+..+..++..+++.+|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            46899999999999999999999999998889999888888888888889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhccc
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKY  153 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~  153 (156)
                      |||.+++++|+.+..|+..+......    ..|+++||||+|+.++  ++++.+|...  ++.+.+.
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~----~~~~ilvgnK~Dl~~~--~~v~~~e~~~--~a~~~~~  140 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLEKE--RHVSIQEAES--YAESVGA  140 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGG----GSEEEEEEECGGGGGG--CCSCHHHHHH--HHHHTTC
T ss_pred             EEeCCchhHHHhhhhhhhhccccccc----ccceeeeccccccccc--cccchHHHHH--HHHHcCC
Confidence            99999999999999999887766543    6789999999999887  6666554433  4444443

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.1e-30  Score=166.96  Aligned_cols=128  Identities=23%  Similarity=0.354  Sum_probs=95.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .+||+++|++|+|||||+++|.+..+... .++. .......+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCCc-CCee-eeeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            37999999999999999999998775432 3333 334455677889999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccc
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEE  142 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~  142 (156)
                      ||++++.+|+.+..|+..+......   .++|+++||||+|+.++  +++..++.
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~---~~~piilvgnK~Dl~~~--~~v~~~~~  128 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQT---DDVPIILVGNKSDLVRS--REVSVDEG  128 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCGGG--CCSCHHHH
T ss_pred             ccccccccccccccccchhhccccc---ccceEEEeecccchhhh--cchhHHHH
Confidence            9999999999999999998766543   27899999999999876  55554443

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-29  Score=166.61  Aligned_cols=123  Identities=38%  Similarity=0.741  Sum_probs=110.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      +..+||+++|+++||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            45789999999999999999999999988888888888888888888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||.+++.+|..+..|+..+..+...    ++|+++||||+|+.++
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~~~----~~piilvgnK~Dl~~~  124 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKSDLRHL  124 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG
T ss_pred             EEEECCCcccchhHHHHHHHHHHhcCC----CCcEEEEEeeeccccc
Confidence            999999999999999999998877653    7899999999999875

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.1e-30  Score=168.50  Aligned_cols=120  Identities=31%  Similarity=0.689  Sum_probs=106.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .+||+++|++++|||||+++|.+..+...+.++.+.++.......++..+.+.+||++|+..+..++..+++.++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999998888888888888788887888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||++++++|+.+..|+..+.+...     ++|+++||||+|+..+
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~-----~~piilvgnK~Dl~~~  122 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKDR  122 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHHC-----SCCEEEEEECCCCSCS
T ss_pred             cccccccccchhHHHHHHHhhccC-----CCceeeecchhhhhhh
Confidence            999999999999999999887764     7899999999999876

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.96  E-value=2.1e-29  Score=165.19  Aligned_cols=132  Identities=31%  Similarity=0.584  Sum_probs=111.8

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.+||+++|++++|||||+++|.+.++...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|+++
T Consensus         2 ~~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i   80 (168)
T d1u8za_           2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeE
Confidence            3578999999999999999999999998888888887654 455678899999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecccc
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEG  143 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~  143 (156)
                      +|||.+++.+++.+..|+..+.+.....   +.|+++|+||+|+.++  +++..++..
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piiivgnK~Dl~~~--~~v~~~~~~  133 (168)
T d1u8za_          81 CVFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK--RQVSVEEAK  133 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCT---TSCEEEEEECGGGGGG--CCSCHHHHH
T ss_pred             EEeeccchhhhhhHHHHHHHHHHhhCCC---CCcEEEEecccccccc--ccccHHHHH
Confidence            9999999999999999999998775443   7899999999999766  556555443

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-29  Score=164.74  Aligned_cols=126  Identities=40%  Similarity=0.754  Sum_probs=113.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|||||||+++|.+.++...+.++.+..........++..+.+.+||++|++.+...+..++..++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            58999999999999999999999999888888888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  140 (156)
                      |.+++.++..+..|+..+......    +.|+++||||+|+.+.  +++..+
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~----~~~iilvgnK~Dl~~~--~~~~~~  126 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDLADK--RQVSIE  126 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECTTCGGG--CCSCHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCC----CceEEEEecccchhhh--hhhhHH
Confidence            999999999999999998876643    7899999999999866  444443

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3e-29  Score=164.09  Aligned_cols=128  Identities=38%  Similarity=0.728  Sum_probs=113.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      ..+||+++|++++|||||+++|.+.++...+.++.+.+.......+++..+.+.+||++|++.+..++..+++.+|++++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            46899999999999999999999999888888888888888888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  140 (156)
                      |||.++.+++..+..|+..+......    ..|+++|+||+|+.+.  +.+..+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilvgnK~Dl~~~--~~~~~~  130 (166)
T d1z0fa1          83 VYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKADLEAQ--RDVTYE  130 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHH
T ss_pred             EeccCchHHHHHHHHHHHHHHhhccc----cceEEEEcccccchhh--cccHHH
Confidence            99999999999999999888765543    7899999999999765  444433

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.5e-29  Score=162.66  Aligned_cols=132  Identities=39%  Similarity=0.724  Sum_probs=117.0

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.+||+++|.++||||||+++|.+.++...+.++.+..........+.....+.+||++|++.+...+..+++.+++++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            46799999999999999999999999999888888888888888888888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecccc
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEG  143 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~  143 (156)
                      +|||++++++|..+..|+..+......    +.|+++|+||+|+.++  +.+..++..
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilvgnK~Dl~~~--~~v~~~~~~  133 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNKCDLTDV--REVMERDAK  133 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCT----TSEEEEEEECTTCGGG--CCSCHHHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCC----cceEEEecccchhccc--cchhHHHHH
Confidence            999999999999999999888766543    7899999999999766  555554433

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.7e-28  Score=164.26  Aligned_cols=130  Identities=38%  Similarity=0.736  Sum_probs=115.6

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ....+||+|+|+++||||||+++|.+..+...+.++.+.+.....+.+.+..+.+.+|||+|++.+..++..+++.++++
T Consensus         3 ~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~   82 (194)
T d2bcgy1           3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   82 (194)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            45679999999999999999999999998888889888888888888899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG  140 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  140 (156)
                      ++|||.++++++..+..|+..+.+....    ..|+++|+||+|+.+.  +.+..+
T Consensus        83 i~v~d~t~~~s~~~~~~~~~~~~~~~~~----~~~iilv~nK~D~~~~--~~~~~~  132 (194)
T d2bcgy1          83 IIVYDVTDQESFNGVKMWLQEIDRYATS----TVLKLLVGNKCDLKDK--RVVEYD  132 (194)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT--CCSCHH
T ss_pred             EEEEeCcchhhhhhHhhhhhhhhhcccC----CceEEEEEeccccccc--cchhHH
Confidence            9999999999999999888888765443    7899999999999886  444443

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.1e-29  Score=162.35  Aligned_cols=141  Identities=33%  Similarity=0.609  Sum_probs=118.1

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-hhhhheecccEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGADCCV   85 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~l   85 (156)
                      +.+||+++|++|+|||||+++|.+.++...+.++.+.........+......+.+||++|...... .+..+++.+|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            468999999999999999999999998888888888777778888889999999999999877654 5677889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhcccc
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYS  154 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~  154 (156)
                      +|||++++++|+.+..|+..+.......   +.|+++||||+|+.++  +++..++...  ++.+.+.+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~---~~pi~lvgnK~Dl~~~--~~v~~~~~~~--~~~~~~~~  142 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLAN---DIPRILVGNKCDLRSA--IQVPTDLAQK--FADTHSMP  142 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCS---CCCEEEEEECTTCGGG--CCSCHHHHHH--HHHHTTCC
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCC---CCeEEEEeccccchhc--cchhHHHHHH--HHHHCCCE
Confidence            9999999999999999999988765433   7899999999999876  5555554433  45555443

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.2e-29  Score=162.51  Aligned_cols=139  Identities=32%  Similarity=0.553  Sum_probs=112.9

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .+||+++|++|||||||+++|.+..+...+.++.+ +.....+.+++..+.+.+||++|...+......+++.+|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            38999999999999999999999988888777775 45567777899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhcccc
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYS  154 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~  154 (156)
                      ||.+++.+|+.+..|+..+.......   ..|+++|+||+|+.++  +.+..++...  ++...+.+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilvgnK~Dl~~~--~~v~~~~~~~--~~~~~~~~  143 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRD---EFPMILIGNKADLDHQ--RQVTQEEGQQ--LARQLKVT  143 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSS---CCSEEEEEECTTCTTS--CSSCHHHHHH--HHHHTTCE
T ss_pred             eccccccchhhHHHHhHHHHhhcccC---CCCEEEEEeccchhhh--ccchHHHHHH--HHHHcCCE
Confidence            99999999999999999887765543   7899999999999876  5555554333  44444433

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.3e-29  Score=162.10  Aligned_cols=129  Identities=32%  Similarity=0.587  Sum_probs=111.3

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +.+||+++|++|||||||+++|.++.+...+.++.+. ........++..+.+.+||++|++.+......+++.++++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-eeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            5689999999999999999999999988888887764 445666778889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE  141 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e  141 (156)
                      |||++++.+|..+..|+..+......   +++|+++||||+|+.+.  +.+..++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~--~~~~~~~  130 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRY---EKVPVILVGNKVDLESE--REVSSSE  130 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTT---SCCCEEEEEECGGGGGG--CCSCHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccC---CCCCEEEEEEccchhhc--ccchHHH
Confidence            99999999999999999988765443   27899999999999876  4444433

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-28  Score=161.81  Aligned_cols=133  Identities=42%  Similarity=0.736  Sum_probs=117.9

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      +...+||+++|++|||||||+++|.+.++...+.++.+..............+.+.+||++|++.+..++..+++.++++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   82 (170)
T d1r2qa_           3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             ceeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceE
Confidence            34568999999999999999999999999888899998888888888888899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecccc
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEG  143 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~  143 (156)
                      ++|||..+++++..+..|+..+.+....    +.|+++|+||+|+.++  ++++.++..
T Consensus        83 ilv~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilvgnK~Dl~~~--~~v~~e~~~  135 (170)
T d1r2qa_          83 IVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADLANK--RAVDFQEAQ  135 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHH
T ss_pred             EEEeccchhhHHHHHHHHhhhhhhccCC----CceEEeeccccccccc--ccccHHHHH
Confidence            9999999999999999999988766543    7899999999999876  555554433

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.7e-29  Score=164.72  Aligned_cols=124  Identities=42%  Similarity=0.778  Sum_probs=87.4

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      -+..+||+++|.++||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~   82 (173)
T d2fu5c1           3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   82 (173)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEE
Confidence            35679999999999999999999999888888888888888888899999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||++++.++..+..|+..+......    +.|+++|+||+|+...
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilv~~k~D~~~~  126 (173)
T d2fu5c1          83 MLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKCDVNDK  126 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEEC--CCSC
T ss_pred             EEEEECCChhhHHHHHHHHHHhhhhccC----CceEEEEEecccchhh
Confidence            9999999999999999999888665543    7899999999999876

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.2e-29  Score=163.26  Aligned_cols=140  Identities=26%  Similarity=0.427  Sum_probs=114.6

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .+||+++|++|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+||++|++.+......+++.+|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            47999999999999999999999998888788876543 44567788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhcccc
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYS  154 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~  154 (156)
                      ||+++++++..+..|+..+......  ..+.|+++||||+|+.++  +++..++...  ++...+.+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~piilVgnK~Dl~~~--~~v~~~e~~~--~~~~~~~~  141 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGD--VESIPIMLVGNKCDESPS--REVQSSEAEA--LARTWKCA  141 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGG--CCSCHHHHHH--HHHHHTCE
T ss_pred             eecccccchhcccchhhhhhhhhcc--CCCCcEEEEeeccccccc--ccccHHHHHH--HHHHcCCe
Confidence            9999999999999999888765432  237899999999999776  5555544333  44444443

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.6e-28  Score=161.61  Aligned_cols=124  Identities=30%  Similarity=0.521  Sum_probs=105.9

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      ..+..+||+++|++|+|||||+++|.+..+...+.++.+. .........+..+.+.+||++|++.+...+..+++.+|+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~-~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC-CEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceee-eeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            3566799999999999999999999999988888888754 445566678888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|||++++++|+.+..|+....+....    +.|+++|+||+|+.++
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~----~~~~ilvgnK~Dl~~~  128 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEYAP----NVPFLLIGTQIDLRDD  128 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECTTSTTC
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhcCC----CCCeeEeeeccccccc
Confidence            99999999999999876655555544432    7899999999999863

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6e-28  Score=158.98  Aligned_cols=128  Identities=54%  Similarity=1.050  Sum_probs=114.1

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   83 (156)
                      .+++.+||+|+|+++||||||+++|.+..+...+.++.+...........+..+.+.+||++|.......+..++..+++
T Consensus         2 ~~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   81 (174)
T d1wmsa_           2 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   81 (174)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccce
Confidence            35678999999999999999999999999988888888888888888889999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      ++++||.+++.+++.+..|++.+..........+.|+++||||+|+.+
T Consensus        82 ~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~  129 (174)
T d1wmsa_          82 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE  129 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred             EEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh
Confidence            999999999999999999999998887777777899999999999965

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-28  Score=162.61  Aligned_cols=122  Identities=40%  Similarity=0.754  Sum_probs=106.5

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      ..+||+|+|++|||||||++++.+.++...+.++.+...........+....+.+||++|++.+...+..++..+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            46899999999999999999999999888877777777777777788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||++++.+|+.+..|+..+.+....    +.|+++|+||+|+...
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~----~~piilv~nK~D~~~~  123 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKSDLESR  123 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCC----CCeEEEEecCCchhhh
Confidence            99999999999999999988776543    7899999999999865

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-28  Score=161.64  Aligned_cols=123  Identities=40%  Similarity=0.764  Sum_probs=111.8

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ...+||+++|.+|||||||+++|.+.++...+.++.+.+........+.....+.+||++|++.+..++..+++.+++++
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            35689999999999999999999999988888888888877777888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||.++++++..+..|+..+......    +.|+++|+||+|+..+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piivv~nK~D~~~~  125 (174)
T d2bmea1          83 LVYDITSRETYNALTNWLTDARMLASQ----NIVIILCGNKKDLDAD  125 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG
T ss_pred             EEEecccchhHHHHhhhhcccccccCC----ceEEEEEEecccccch
Confidence            999999999999999999998776543    7899999999999765

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7e-28  Score=159.06  Aligned_cols=120  Identities=26%  Similarity=0.487  Sum_probs=104.8

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      ..||+++|++|+|||||+++|.+..+.+.+.++.+. ........++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-eccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            479999999999999999999999988888888764 4455667788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||++++++|+.+..|+..+......    ++|+++|+||+|+.+.
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~----~~piilvgnK~Dl~~~  121 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKDLRND  121 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHST----TSCEEEEEECGGGTTC
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCC----CCceEEeeecccccch
Confidence            9999999999987766666555432    7899999999999865

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=3.2e-28  Score=161.66  Aligned_cols=125  Identities=82%  Similarity=1.331  Sum_probs=115.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .+||+|+|.++||||||+++|.+.++...+.++.+.+.........+..+.+.+||++|+......+..++..+++++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            58999999999999999999999999888889998888888888888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||.+++.++..+..|+..+..........++|+++|+||+|+.+.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~  126 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR  126 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc
Confidence            999999999999999999988877666668899999999999764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.5e-28  Score=160.02  Aligned_cols=129  Identities=29%  Similarity=0.499  Sum_probs=106.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .+||+++|++|+|||||+++|.+..+.+.+.++.+.++. .....++..+.+.+||++|+..+. ....+++.++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            379999999999999999999999988888888877654 344568888999999999988764 556688999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecccc
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEG  143 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~  143 (156)
                      ||++++.+|..+..|+..........   +.|+++||||+|+.++  +++..++..
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~---~~piilvgnK~Dl~~~--r~V~~~e~~  130 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPK---NVTLILVGNKADLDHS--RQVSTEEGE  130 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTS---CCCEEEEEECGGGGGG--CCSCHHHHH
T ss_pred             cccCCccchhhhhhhccccccccccc---Ccceeeeccchhhhhh--ccCcHHHHH
Confidence            99999999999988877665544432   7899999999999866  555555443

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.4e-28  Score=158.65  Aligned_cols=122  Identities=30%  Similarity=0.602  Sum_probs=108.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +.+||+++|++|||||||+++|...++...+.++.+... ...+..++..+.+.+||++|+..+...+..+++.+|++++
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            568999999999999999999999999888888876544 5556778888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||++++.+|+.+..|+..+.+.....   +.|+++||||+|+..+
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~---~~p~ilvgnK~Dl~~~  123 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTE---DVPMILVGNKCDLEDE  123 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCS---CCCEEEEEECTTCGGG
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCC---CCeEEEEEEecCcccc
Confidence            999999999999999999988765432   7899999999999876

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1e-27  Score=157.30  Aligned_cols=122  Identities=40%  Similarity=0.718  Sum_probs=111.5

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      ..+||+++|++|+|||||+++|.+.++.+.+.++.+.++....+...+..+.+.+||++|++.+...+..++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            46899999999999999999999999998889998888888888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||.+++.+|..+..|+..+......    ..|+++|+||+|+.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~~~~v~nk~d~~~~  123 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASK----DIIIALVGNKIDMLQE  123 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGS
T ss_pred             EEeCCcccchhhhhhhhhhhcccccc----ccceeeeecccccccc
Confidence            99999999999999998877665543    7799999999999765

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.1e-28  Score=161.18  Aligned_cols=125  Identities=71%  Similarity=1.242  Sum_probs=96.8

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      .+||+++|+++||||||+++|.+.++...+.++.+........... .....+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            5899999999999999999999998887777777665555554433 344678999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||++++.+|+.+..|+..+..........++|+++|+||+|+.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~  127 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES  127 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh
Confidence            9999999999999999999988877766778999999999999865

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.7e-27  Score=158.02  Aligned_cols=121  Identities=30%  Similarity=0.535  Sum_probs=105.5

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      ..+||+++|++|+|||||+++|....+...+.++.+.. ........+..+.+.+||++|++.+..++..+++.+|++++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-cceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            46899999999999999999999999888888888644 45556678888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||+++++||+.+..|+.........    +.|+++|+||+|+.+.
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~----~~~i~lvgnK~Dl~~~  122 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCP----KTPFLLVGTQIDLRDD  122 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCT----TCCEEEEEECGGGGGC
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCC----CCceEEEecccccccc
Confidence            99999999999998766665554432    7899999999999754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-28  Score=164.15  Aligned_cols=133  Identities=41%  Similarity=0.672  Sum_probs=109.6

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC----------eEEEEEEEeCCCcccccchhh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED----------RLFTLQIWDTAGQERFQSLGV   75 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~D~~g~~~~~~~~~   75 (156)
                      +..+||+++|+++||||||+++|.+.++...+.++.+.++....+.+++          ....+.+|||+|++.+..++.
T Consensus         3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~   82 (186)
T d2f7sa1           3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT   82 (186)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHH
Confidence            4568999999999999999999999998877777776666665555433          346899999999999999999


Q ss_pred             hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecccc
Q 031598           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEG  143 (156)
Q Consensus        76 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~  143 (156)
                      .+++.+|++++|||.+++.+++.+..|+..+....   .....|+++|+||+|+.++  +++..++..
T Consensus        83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iilv~nK~Dl~~~--~~v~~~e~~  145 (186)
T d2f7sa1          83 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---YCENPDIVLIGNKADLPDQ--REVNERQAR  145 (186)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC---TTTCCEEEEEEECTTCGGG--CCSCHHHHH
T ss_pred             HHHhcCCEEEEEEeccccccceeeeeccchhhhhc---cCCCceEEEEeeeccchhh--hcchHHHHH
Confidence            99999999999999999999999998887764332   3347899999999999876  666655443

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.7e-27  Score=153.16  Aligned_cols=122  Identities=30%  Similarity=0.579  Sum_probs=107.8

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +.+||+++|+++||||||+++|.+..+...+.++.+..+.. .....+..+.+.+||++|++.+......+++.++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE-EEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecc-ceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            45899999999999999999999999888878887765544 45567888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |||.+++.+|+.+..|+..+.+.....   ++|+++|+||+|+...
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~  123 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSD---DVPMVLVGNKCDLAAR  123 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCS---SCCEEEEEECTTCSCC
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCC---CCeEEEEecccccccc
Confidence            999999999999999999988776543   7899999999999754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.7e-27  Score=156.33  Aligned_cols=122  Identities=28%  Similarity=0.516  Sum_probs=105.0

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ++.+||+++|++|||||||+++|.+..+...+.++.+. .....+..++..+.+.+||++|++.+..++..+++.+|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceee-ceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            45699999999999999999999999988888888764 34555677899999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++++|+.+..|+....+....    ++|+++|+||+|+.++
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~----~~piilvgnK~Dl~~~  124 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDD  124 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST----TSCEEEEEECHHHHTC
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCC----CCcEEEEeecccchhh
Confidence            999999999999987655554444332    7899999999998765

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.2e-27  Score=153.54  Aligned_cols=130  Identities=40%  Similarity=0.686  Sum_probs=103.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      +..+||+++|+++||||||+++|.+.++... ..++.+.+.....+...+..+.+++|||+|++.+..++..+++.+|++
T Consensus         4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~   83 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   83 (170)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence            3568999999999999999999998876543 345556677777788899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE  141 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e  141 (156)
                      ++|||.+++.++..+..|+..+......    ..|+++|+||+|+.++  +.+..++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilv~~k~d~~~~--~~v~~~~  134 (170)
T d2g6ba1          84 LLLYDVTNKASFDNIQAWLTEIHEYAQH----DVALMLLGNKVDSAHE--RVVKRED  134 (170)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECCSTTSC--CCSCHHH
T ss_pred             EEEecCCcccchhhhhhhhhhhhhccCC----CceEEEEEeeechhhc--ccccHHH
Confidence            9999999999999999988887766543    6799999999999987  5555544

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.1e-26  Score=153.62  Aligned_cols=120  Identities=22%  Similarity=0.449  Sum_probs=103.2

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      ..||+++|++|||||||+++|.+..+.+.+.++.+. ........++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-cccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            368999999999999999999999988888887754 4455566788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||+++++||+.+..|+.........    +.|+++||||+|+...
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~----~~~iilVgnK~Dl~~~  121 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTD  121 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCT----TCEEEEEEECGGGGGC
T ss_pred             eecccCCCHHHHHHHHHHHHhccCC----cceEEEEEeccccccc
Confidence            9999999999988766665544432    7899999999998753

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.8e-27  Score=153.46  Aligned_cols=121  Identities=40%  Similarity=0.778  Sum_probs=104.7

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .+||+++|++++|||||++++.+.++...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999998888889988888888888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||.+++.+++.+..|+..+......    ..|++++++|.|+.+.
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~----~~~~i~~~~k~d~~~~  122 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDMETR  122 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTTC
T ss_pred             EECCCccCHHHHHhhhhhhhccccC----cceeeeecchhhhhhh
Confidence            9999999999999888888766543    6789999999999765

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-26  Score=153.15  Aligned_cols=124  Identities=41%  Similarity=0.745  Sum_probs=111.0

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ...+||+++|++++|||||+++|.+..+...+.++.+.......+.+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            45789999999999999999999999988888888888888888888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||++++.++..+..|+..+.+....   ...|+++++||.|....
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~~i~~~~nk~d~~~~  128 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTR---NDIVNMLVGNKIDKENR  128 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSC---SCCEEEEEEECTTSSSC
T ss_pred             EEEECCCccccccchhhhhhhcccccc---cceeeEEEeeccccccc
Confidence            999999999999999999888654433   26799999999998753

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-26  Score=152.09  Aligned_cols=132  Identities=22%  Similarity=0.364  Sum_probs=102.0

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc-cchhhhheecccEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-QSLGVAFYRGADCC   84 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~~   84 (156)
                      ..+||+++|++++|||||+++|.+.... ....++.+.+.....+.+++..+.+.+||+++.... ..+...+++.+|++
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~   81 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccccccccccccee
Confidence            4589999999999999999999977654 233445555666777888899999999998763222 22556788999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecccc
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEG  143 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~  143 (156)
                      ++|||++++.++..+..|+..+.....   .+++|+++|+||+|+.++  ++++.++..
T Consensus        82 ilvfd~t~~~s~~~~~~~~~~i~~~~~---~~~~piilvgnK~Dl~~~--~~v~~~~~~  135 (172)
T d2g3ya1          82 LIVYSITDRASFEKASELRIQLRRARQ---TEDIPIILVGNKSDLVRC--REVSVSEGR  135 (172)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTSGG---GTTSCEEEEEECTTCGGG--CCSCHHHHH
T ss_pred             eeeecccccchhhhhhhhhhhhhhccc---cCCceEEEEecccccccc--ccccHHHHH
Confidence            999999999999999999988865433   237899999999999876  666655543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.94  E-value=3.1e-26  Score=149.33  Aligned_cols=118  Identities=25%  Similarity=0.486  Sum_probs=101.3

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .+||+++|++++|||||+++|.+.++...+.+|.+.+.  ..+..++  +.+++||+||+..+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeee--eeeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            58999999999999999999999998887788776554  3445555  7899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ||++++.++.....|+..+.....   .++.|+++|+||.|+.+.
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~---~~~~pi~lv~nK~Dl~~~  119 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQ---LQGIPVLVLGNKRDLPGA  119 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTC
T ss_pred             cccccccccchhhhhhhhhhhhhc---ccCCcEEEEEeccccchh
Confidence            999999999998888877764432   347899999999999865

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-25  Score=147.27  Aligned_cols=129  Identities=19%  Similarity=0.318  Sum_probs=102.2

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      .+.+||+++|++++|||||+++|.+.++... .++.+. .+...+.+++..+.+.+|||+|+..+     .+++.+|+++
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~-~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~i   75 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESE-QYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVI   75 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCE-EEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccce-eEEEEeecCceEEEEEEeeccccccc-----ccccccceeE
Confidence            3569999999999999999999999987643 444433 34566778999999999999997654     3678899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccc
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEE  142 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~  142 (156)
                      +|||++++.+|+.+..|+..+..... ....+.|+++|+||.|+.....+.+..++.
T Consensus        76 lVfd~~~~~Sf~~~~~~~~~i~~~~~-~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~  131 (175)
T d2bmja1          76 FVFSLEDENSFQAVSRLHGQLSSLRG-EGRGGLALALVGTQDRISASSPRVVGDARA  131 (175)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHCC---CCCCEEEEEEECTTCCSSSCCCSCHHHH
T ss_pred             EEeecccchhhhhhHHHHHHHHHHhh-cccCCccEEEEeeecCcchhhhcchhHHHH
Confidence            99999999999999999988866543 334578999999999997765455544433

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.93  E-value=5.6e-26  Score=149.50  Aligned_cols=123  Identities=25%  Similarity=0.427  Sum_probs=99.1

Q ss_pred             CcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecc
Q 031598            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA   81 (156)
Q Consensus         2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (156)
                      ++..++.+||+++|+++||||||+++|.+..+... .++.+.  ....+...+  +.+.+||++|++.+...+..+++.+
T Consensus        10 ~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~--~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~   84 (176)
T d1fzqa_          10 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENT   84 (176)
T ss_dssp             SSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTC
T ss_pred             hCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeeee--eEEEeccCC--eeEeEeeccccccchhHHHHHhhcc
Confidence            35566779999999999999999999998876422 222222  233444455  7899999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |++++|||++++.++..+..++..+.....   ..+.|+++|+||+|+.+.
T Consensus        85 ~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~---~~~~pillv~nK~Dl~~~  132 (176)
T d1fzqa_          85 DILIYVIDSADRKRFEETGQELTELLEEEK---LSCVPVLIFANKQDLLTA  132 (176)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHTTCGG---GTTCCEEEEEECTTSTTC
T ss_pred             ceeEEeeccccccchhhhhhhhhhhhhhhc---cCCCeEEEEEEecccccc
Confidence            999999999999999998887777654333   337899999999999876

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.92  E-value=9.9e-25  Score=142.12  Aligned_cols=118  Identities=21%  Similarity=0.460  Sum_probs=95.4

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +.+||+++|++|||||||+++|.+..+. ...++.+..  ...+..++  +.+.+||+||++.+...+..+++.++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeee--eeeccccc--cceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            3589999999999999999999987754 445665544  33344555  789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +||.++..++.....++..+....   ...+.|+++|+||+|+.+.
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~  118 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVEE---RLAGATLLIFANKQDLPGA  118 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTC
T ss_pred             eeecccchhHHHHHHhhhhhhhhc---ccCCCceEEEEeccccccc
Confidence            999999999988877666554322   2337899999999999865

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.91  E-value=2e-24  Score=141.78  Aligned_cols=119  Identities=18%  Similarity=0.394  Sum_probs=94.6

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ++.+||+++|+++||||||+++|.+..+.. ..++.+..  ........  +.+.+||+||+..+...+..+++.+++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFN--VETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEE--EEEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeee--EEEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            446999999999999999999999876532 23333332  22333344  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|||.++..++..+..|+..+....   ...+.|+++|+||+|+.+.
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~---~~~~~piiiv~NK~Dl~~~  128 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDR---EMRDAIILIFANKQDLPDA  128 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSG---GGTTCEEEEEEECTTSTTC
T ss_pred             EEEecccchhHHHHHHHHHHHhhhc---ccccceeeeeeeccccccc
Confidence            9999999999999888777665432   2337899999999999865

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.91  E-value=2.6e-24  Score=142.25  Aligned_cols=120  Identities=22%  Similarity=0.427  Sum_probs=91.7

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+.+||+++|++|||||||+++|.+..+.. ..++.+...  ......+  +.+.+||++|++.+...+..++..++++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEE--EEEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            4557999999999999999999998776532 234444332  2333444  7899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++|||.+++.++.+...|+..+...   ....+.|+++|+||+|+.+.
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~---~~~~~~piliv~NK~Dl~~~  133 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQE---EELQDAALLVFANKQDQPGA  133 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTS---STTSSCEEEEEEECTTSTTC
T ss_pred             EEEeeecccccchhHHHHHHHHHHh---hccCCcceEEEEEeeccccc
Confidence            9999999999999888777665432   33347899999999999764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.87  E-value=3.4e-22  Score=128.86  Aligned_cols=116  Identities=16%  Similarity=0.310  Sum_probs=93.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~   88 (156)
                      +||+++|++|||||||+++|.+.++..........   .  ...+...+.+.+||++|...+......++..+++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN---V--ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC---E--EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE---E--EEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            58999999999999999999988865543333221   1  222345578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |..++.++..+..|+..+.....   ....|+++++||.|+.+.
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~v~~k~d~~~~  116 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDE---LRDAVLLVFANKQDLPNA  116 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC
T ss_pred             EecChHHHHHHHHHHHHHHHhhc---ccCceEEEEeeccccccc
Confidence            99999999998888777764333   237899999999999875

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.9e-21  Score=130.77  Aligned_cols=120  Identities=20%  Similarity=0.280  Sum_probs=87.0

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc-chhhhheecccEEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADCCVLVY   88 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~l~v~   88 (156)
                      +|+++|++++|||||+++|.+..+... .++.+.+...... .......+.+||++|++.+. ..+..++..++++++||
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            799999999999999999998876543 4455444333222 23445789999999998775 56678889999999999


Q ss_pred             ECCChhhH-HHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           89 DVNSMKSF-DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        89 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      |+++..++ .....++..+...... ...++|+++|+||+|+++.
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~-~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMA-LKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHT-STTCCEEEEEEECTTSTTC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHH-hhcCCcEEEEEECcccCCC
Confidence            99997653 4444454444332211 1126799999999999875

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=2.6e-20  Score=122.44  Aligned_cols=119  Identities=18%  Similarity=0.179  Sum_probs=79.3

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch--------hhh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVA   76 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~   76 (156)
                      ...-.|+++|.+|+|||||+++|.+.+... ...+..+...........+  ..+.+|||||.......        ...
T Consensus         3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~   80 (178)
T d1wf3a1           3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE   80 (178)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccc
Confidence            344579999999999999999999876432 1222222333333344455  57899999996443222        234


Q ss_pred             heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .++.+|++++|+|++++..... ..+...+.....     +.|+++|+||+|+.+.
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~~-----~~piilv~NK~Dl~~~  130 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPED-ELVARALKPLVG-----KVPILLVGNKLDAAKY  130 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGTT-----TSCEEEEEECGGGCSS
T ss_pred             ccccccceeeeechhhhhcccc-cchhhheecccc-----chhhhhhhcccccccC
Confidence            4678999999999998754332 333343332222     6799999999999765

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3e-21  Score=128.82  Aligned_cols=119  Identities=15%  Similarity=0.241  Sum_probs=82.6

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +.+||+++|++|||||||+++|.   +...+.||.|...  ..+..+.  ..+.+||++|++.+...+..+++.++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEEeeee--eeeeeecccceeeecccccccccccceeEE
Confidence            46899999999999999999994   3344567777543  3445555  789999999999999999999999999999


Q ss_pred             EEECCChhhH-------HHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMKSF-------DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|+.++..++       .....+...+...+......+.|+++|+||+|+.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~  126 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEE  126 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhh
Confidence            9999985432       222333333333334444458899999999998653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.83  E-value=1.2e-20  Score=123.64  Aligned_cols=119  Identities=23%  Similarity=0.386  Sum_probs=88.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      ++.+||+++|.+|||||||++++.+.++... .++.+..  .......+  ..+.+||+++.+.....+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~~--~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-cccccee--EEEEeecc--eEEEEeccccccccccchhhhhccceeee
Confidence            3458999999999999999999998876432 2222221  22233344  68999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|.++..++.....+...+.....   ..+.|+++|+||+|++..
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~  131 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKEC  131 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGG---GTTCEEEEEEECTTSTTC
T ss_pred             eecccccccchhhhhhhhhhhhhccc---ccceEEEEEEEccccccc
Confidence            99999999999887666655543332   238899999999999875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.8e-20  Score=124.35  Aligned_cols=116  Identities=15%  Similarity=0.238  Sum_probs=87.8

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +.+||+++|+.|||||||+++|....++..     +.  ....+....  ..+.+||+.|++.+...+..+++.++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~-----~~--~~~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGT-----GI--VETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCC-----SE--EEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCc-----cE--EEEEEEeee--eeeeeeccccccccccchhhcccCCceeee
Confidence            358999999999999999999987765432     22  223344444  789999999999999999999999999999


Q ss_pred             EEECCChhhHHH-------HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           87 VYDVNSMKSFDN-------LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        87 v~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      |||.++..++..       ..++...+...+......+.|+++++||+|+..
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~  123 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFE  123 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhh
Confidence            999998876532       222333333333444455889999999999854

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.1e-20  Score=120.80  Aligned_cols=118  Identities=25%  Similarity=0.376  Sum_probs=83.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc--------chhhhhee
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAFYR   79 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~   79 (156)
                      +||+++|.+++|||||+++|.+.+... ...+....+.....+...+  ..+.++|+||.....        .....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            689999999999999999999876432 2223333333344455555  578899999944332        12234467


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        80 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      .+|++++++|..+..++.....|.+.+.....     +.|+++|+||+|+.++.
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~iilv~NK~Dl~~~~  128 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPA-----KLPITVVRNKADITGET  128 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT-----TCCEEEEEECHHHHCCC
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhccc-----ccceeeccchhhhhhhH
Confidence            89999999999998877666655554443322     68999999999997763

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=3.9e-20  Score=125.59  Aligned_cols=119  Identities=16%  Similarity=0.206  Sum_probs=90.8

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l   85 (156)
                      +...||+++|++|||||||++++...++    .||.|..  ...+.+++  ..+.+||++|+..++..|..+++.+++++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~--~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii   75 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIF--ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAII   75 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCE--EEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeE--EEEEEECc--EEEEEEecCccceeccchhhhcccccceE
Confidence            3568999999999999999999976654    3566544  33455565  78999999999999999999999999999


Q ss_pred             EEEECCChhh-------HHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           86 LVYDVNSMKS-------FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        86 ~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++|.++...       ...+.++...+...+......++|++|++||+|+.++
T Consensus        76 ~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~  129 (221)
T d1azta2          76 FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE  129 (221)
T ss_dssp             EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred             EEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhh
Confidence            9999986432       1223333444444445555558999999999999765

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.5e-19  Score=120.18  Aligned_cols=116  Identities=16%  Similarity=0.151  Sum_probs=91.2

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~   86 (156)
                      +.+||+++|++|||||||+++|....+.  +.||.|.+..  .+..  ....+.+||++|++.+...+..+++.++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY--PFDL--QSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE--EEEC--SSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE--EEec--cceeeeeccccccccccccccccccccceeeE
Confidence            3589999999999999999999877763  5677776543  2333  34789999999999999999999999999999


Q ss_pred             EEECCChh-----------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           87 VYDVNSMK-----------SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        87 v~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +||.++..           .++....|...+....    ..+.|+++|+||.|+...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~----~~~~~~~~v~NK~Dl~~~  127 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPW----FQNSSVILFLNKKDLLEE  127 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGG----GSSSEEEEEEECHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhh----ccCccEEEecchhhhhhh
Confidence            99998854           3444555655554332    338899999999998643

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=2.3e-20  Score=125.27  Aligned_cols=119  Identities=14%  Similarity=0.140  Sum_probs=82.9

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhhe----ecccE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFY----RGADC   83 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~----~~~~~   83 (156)
                      ..+|+++|+++||||||+|+|.+.++.+    +.+.+....  .+......+.+||+||+..+...+..++    ..++.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt~~~~~~--~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLS--AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCC----BCCCSSCEE--ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCC----eEEecceEE--EEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            4689999999999999999999887543    222222222  2334446789999999887766555544    45688


Q ss_pred             EEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           84 CVLVYDVNS-MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        84 ~l~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +++++|..+ ..++.....|+..+..........++|+++|+||+|+...
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            888988775 5556666666555443333233348899999999999875

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=9.4e-19  Score=112.62  Aligned_cols=115  Identities=23%  Similarity=0.408  Sum_probs=92.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d   89 (156)
                      ||+++|++++|||||+++|.+.++.. ..++.+.+.  ....+.+  ..+.+||+++...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS--EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEE--EEECCTT--CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeE--EEeccCC--eeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999988653 345554433  2233333  678899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .++..++.....++........   ..+.|+++++||.|+...
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~i~~~k~d~~~~  116 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAE---LKDVPFVILGNKIDAPNA  116 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTT---TTTCCEEEEEECTTSSSC
T ss_pred             ccchhhhhhhhHHHHhhhhhhc---cCCceEEEEecccccccc
Confidence            9999998888777766654433   347899999999999764

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.79  E-value=1.5e-18  Score=112.26  Aligned_cols=117  Identities=21%  Similarity=0.390  Sum_probs=91.8

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v   87 (156)
                      .+||+++|.++||||||+++|.+.++... .++.+..  ......+.  ..+.+||.++.......+...+...++++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFN--VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEE--EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcce-eccccee--eeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            48999999999999999999999887643 3333322  33333444  6899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +|..+..++.....+........   .....|+++|+||.|+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~iv~nk~Dl~~~  121 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEE---ELRKAILVVFANKQDMEQA  121 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTC
T ss_pred             hhhhhcchhhhccchhhhhhhhh---ccccceEEEEEeecccccc
Confidence            99999888887766555444322   2337899999999999876

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=3.9e-19  Score=121.03  Aligned_cols=116  Identities=27%  Similarity=0.279  Sum_probs=76.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEE----------------EECCeEEEEEEEeCCCcccccch
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV----------------QFEDRLFTLQIWDTAGQERFQSL   73 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~D~~g~~~~~~~   73 (156)
                      .|+|+|.+++|||||+++|++....................                .+......+.++||||+..|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            39999999999999999998643211111111100000001                11233457899999999999888


Q ss_pred             hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        74 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      ....+..+|++++|+|+.+.-..+.. ..+..+..    .   +.|+++|+||+|+.+.+
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~---~~p~iivlNK~D~~~~~  138 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQTQ-EALNILRM----Y---RTPFVVAANKIDRIHGW  138 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH----T---TCCEEEEEECGGGSTTC
T ss_pred             chhcccccceEEEEEecccCcccchh-HHHHHhhc----C---CCeEEEEEECccCCCch
Confidence            88889999999999999885443332 22222221    1   78999999999998763

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=9.4e-19  Score=117.27  Aligned_cols=116  Identities=16%  Similarity=0.107  Sum_probs=80.6

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC------CC-----------CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK------KF-----------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (156)
                      +.+||+++|..++|||||+++|+..      ..           +++.....+.+.....+..++  ..++++||||+..
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchh
Confidence            5689999999999999999999622      00           000011222222333344444  6789999999999


Q ss_pred             ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG  132 (156)
Q Consensus        70 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~  132 (156)
                      |.......++.+|++|+|+|+.+....+..+.|.....     .   ++| +++++||+|+.+.
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~-----~---gi~~iiv~iNK~D~~~~  135 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-----V---GVPYIVVFMNKVDMVDD  135 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH-----T---TCCCEEEEEECGGGCCC
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH-----c---CCCeEEEEEEecccCCC
Confidence            99888899999999999999998766554333322221     1   555 7788999999764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=6e-18  Score=111.07  Aligned_cols=117  Identities=15%  Similarity=0.009  Sum_probs=72.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cchhhhheeccc
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRGAD   82 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~~   82 (156)
                      +|+++|.+++|||||+|+|.+.+.........+........ .......+.+|||||....       .......+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV-EVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE-ECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeecee-eecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            48999999999999999998776432222222222222222 2233357899999994321       122234467789


Q ss_pred             EEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           83 CCVLVYDVNSMK--SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        83 ~~l~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++++|.....  .......++........     +.|+++|+||+|+.++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~~~  128 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPALL-----RRPSLVALNKVDLLEE  128 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHHH-----HSCEEEEEECCTTSCH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccccc-----hhhhhhhhhhhhhhhH
Confidence            999999987642  22222333332221111     5699999999999875

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.74  E-value=2.2e-17  Score=108.21  Aligned_cols=120  Identities=18%  Similarity=0.332  Sum_probs=85.7

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   84 (156)
                      .++..||+++|++|||||||+++|.+..+... .++.+.+  ...+.+++  ..+..||+.++..+...+....+..+++
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGI   84 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccc--eeEEEecc--cccccccccchhhhhhHHhhhhccccee
Confidence            35678999999999999999999998876543 3333333  23344455  5688999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++++|..+...+.....+.......   ....+.|+++++||.|+...
T Consensus        85 ~~~~d~~d~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~K~D~~~~  129 (186)
T d1f6ba_          85 VFLVDCADHERLLESKEELDSLMTD---ETIANVPILILGNKIDRPEA  129 (186)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTC---GGGTTSCEEEEEECTTSTTC
T ss_pred             eeeeeccCccchHHHHHHHHHhhcc---cccCCCceEEEEeccCcccc
Confidence            9999999998888766544444322   22337899999999999764

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.73  E-value=1.6e-17  Score=110.47  Aligned_cols=117  Identities=17%  Similarity=0.091  Sum_probs=81.4

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC----------------CCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK----------------KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (156)
                      +.++|+++|..++|||||+++|.+.                ....+....  .+.......+......++++||||+..|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rg--iTi~~~~~~~~~~~~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARG--ITINAAHVEYSTAARHYAHTDCPGHADY   79 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETT--EEEECEEEEEECSSCEEEEEECSSHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCC--ccCCcceEEEEeceeeEEeecCcchHHH
Confidence            5689999999999999999999741                111222222  3333333444444478999999999999


Q ss_pred             cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .......+..+|++++|+|+.+...-+.... +..+. .+.     ..|+|++.||+|+..+
T Consensus        80 ~~~~~~~~~~aD~allVVda~~G~~~QT~~~-~~~a~-~~~-----~~~iIv~iNK~D~~~~  134 (196)
T d1d2ea3          80 VKNMITGTAPLDGCILVVAANDGPMPQTREH-LLLAR-QIG-----VEHVVVYVNKADAVQD  134 (196)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHHHHH-HHHHH-HTT-----CCCEEEEEECGGGCSC
T ss_pred             HHHHHHHHhhcCeEEEEEEcCCCCchhHHHH-HHHHH-Hhc-----CCcEEEEEeccccccc
Confidence            8888888899999999999998654333221 22221 111     3479999999999865

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.73  E-value=1.1e-17  Score=109.86  Aligned_cols=117  Identities=18%  Similarity=0.173  Sum_probs=78.3

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCce-----e--eEEEEEEEEECCeEEEEEEEeCCCcccccchhhhhe
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-----G--ADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFY   78 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   78 (156)
                      .+.++|+++|.+++|||||+++|.+...........     +  ...........+  ..+.++|+||+..+.......+
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhh
Confidence            456899999999999999999998643221111110     1  111111222333  5788999999999988888899


Q ss_pred             ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        79 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+|++++++|+.+....+... .+..+. .   .   ++|+++|+||+|+.+.
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~~~-~~~~~~-~---~---~~p~iiv~NKiD~~~~  126 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQTGE-HMLILD-H---F---NIPIIVVITKSDNAGT  126 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHH-HHHHHH-H---T---TCCBCEEEECTTSSCH
T ss_pred             hhccccccccccccccchhhhh-hhhhhh-h---c---CCcceeccccccccCH
Confidence            9999999999999865433221 122221 1   1   7899999999999875

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=6.2e-18  Score=111.14  Aligned_cols=114  Identities=22%  Similarity=0.249  Sum_probs=69.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc---------------cchh
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------------QSLG   74 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------------~~~~   74 (156)
                      .|+++|.+++|||||+|+|.+.+......+..+.+  ...+...+    +.++||||....               ....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--cccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            58999999999999999999887543333322222  22333333    568999994211               1222


Q ss_pred             hhheecccEEEEEEECCChhhHHHHHH------HHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           75 VAFYRGADCCVLVYDVNSMKSFDNLNN------WREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        75 ~~~~~~~~~~l~v~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ...++.+|++++|+|...+........      ....+...+...   +.|+++|+||+|+..+
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~---~~p~iiv~NK~D~~~~  136 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL---DIPTIVAVNKLDKIKN  136 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT---TCCEEEEEECGGGCSC
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc---CCCEEEEEeeeehhhh
Confidence            334567899999999876533222111      011122222211   7799999999998765

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=3.8e-17  Score=113.43  Aligned_cols=118  Identities=19%  Similarity=0.269  Sum_probs=85.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcC--CCC----------------CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNK--KFS----------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (156)
                      .+.+||+++|..++|||||+.+++..  ...                .......+.......+.+++  ..++++||||+
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~   81 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGH   81 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSS
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCch
Confidence            35678999999999999999999621  100                11111111222223344455  78999999999


Q ss_pred             ccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598           68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (156)
Q Consensus        68 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  133 (156)
                      .+|.......++.+|++|+|+|+.+.-..+...-|...-    . .   ++|.++++||+|....+
T Consensus        82 ~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~----~-~---~lP~i~fINKmDr~~ad  139 (276)
T d2bv3a2          82 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE----K-Y---KVPRIAFANKMDKTGAD  139 (276)
T ss_dssp             SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHH----T-T---TCCEEEEEECTTSTTCC
T ss_pred             hhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHH----H-c---CCCEEEEEecccccccc
Confidence            999999999999999999999999987666555554332    1 1   88999999999998874

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=1.8e-17  Score=107.90  Aligned_cols=113  Identities=21%  Similarity=0.280  Sum_probs=68.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCccc---------ccchhhhhee
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFYR   79 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~   79 (156)
                      +|+++|.+|+|||||+++|.+...... ..+..+.......+....  ..+.++|++|...         .......++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            689999999999999999998664321 111111111122233333  6789999999321         1222334457


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        80 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+|+++++++.++...... ..+...+...       +.|+++|+||+|+.++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~-------~~pviiv~NK~Dl~~~  124 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKS-------TVDTILVANKAENLRE  124 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHH-------TCCEEEEEESCCSHHH
T ss_pred             cCcEEEEeecccccccccc-cccccccccc-------cccccccchhhhhhhh
Confidence            8999999999887654332 3333333321       6799999999999754

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=1.2e-17  Score=107.51  Aligned_cols=112  Identities=25%  Similarity=0.329  Sum_probs=75.4

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc---------chhhhhe
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ---------SLGVAFY   78 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~   78 (156)
                      +||+++|.+++|||||+++|.+.+... ...+..+...........+  ..+.+|||||.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            689999999999999999999765322 2222222233334445555  678899999932110         1122235


Q ss_pred             ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        79 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..+|++++|+|.+++........     .....     ..++++++||+|+.++
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~-----~~~~~-----~~~~i~~~~k~d~~~~  122 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKI-----LERIK-----NKRYLVVINKVDVVEK  122 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHH-----HHHHT-----TSSEEEEEEECSSCCC
T ss_pred             HhCCEEEEEEeCCCCcchhhhhh-----hhhcc-----cccceeeeeeccccch
Confidence            77999999999999876543322     22222     5689999999999876

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=3.3e-17  Score=107.91  Aligned_cols=116  Identities=26%  Similarity=0.207  Sum_probs=73.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc------------cch
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------------QSL   73 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------~~~   73 (156)
                      ..+||+++|.+++|||||+++|.+.+... ...+..+.......+..++  ..+.++|+||....            ...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhHH
Confidence            46999999999999999999999876421 1112222222233455565  56889999995322            223


Q ss_pred             hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        74 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ....++.+|++++|+|++.+...+. ..+...+. ..      +.|+++|+||+|+...
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~-~~------~~~~i~v~nK~D~~~~  135 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQD-QRMAGLME-RR------GRASVVVFNKWDLVVH  135 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHH-HT------TCEEEEEEECGGGSTT
T ss_pred             HHHHHhcCCEEEEeecccccchhhH-HHHHHHHH-Hc------CCceeeeccchhhhcc
Confidence            3345578999999999987643222 22222222 11      6799999999999765

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=4.7e-17  Score=116.12  Aligned_cols=121  Identities=18%  Similarity=0.193  Sum_probs=85.6

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCC--C--------------C--CCCCCceeeEEEEEEEE------------EC
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK--F--------------S--NQYKATIGADFLTKEVQ------------FE   53 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~--~--------------~--~~~~~~~~~~~~~~~~~------------~~   53 (156)
                      .....++|+|+|..++|||||+.+|+...  .              .  .....+...........            .+
T Consensus        13 ~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~   92 (341)
T d1n0ua2          13 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD   92 (341)
T ss_dssp             CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred             CcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccc
Confidence            44567789999999999999999996210  0              0  01111111111111111            13


Q ss_pred             CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      +..+.++++||||+.+|.......++.+|++++|+|+.+.-..+...-|......        ++|+++|+||+|....
T Consensus        93 ~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~--------~~p~i~viNKiDr~~~  163 (341)
T d1n0ua2          93 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE--------RIKPVVVINKVDRALL  163 (341)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT--------TCEEEEEEECHHHHHH
T ss_pred             ccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc--------CCCeEEEEECcccccc
Confidence            3568899999999999999999999999999999999998776665555554421        7899999999998643

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=1e-17  Score=110.42  Aligned_cols=121  Identities=17%  Similarity=0.085  Sum_probs=71.8

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc----cch---hhhheeccc
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSL---GVAFYRGAD   82 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~~   82 (156)
                      +|+++|.+++|||||+|+|.+.+......+..+.+.......+.+. ..+.+|||||....    ...   ....+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            6899999999999999999877643222222222222333333332 36889999994221    111   122345688


Q ss_pred             EEEEEEECCChhhHHHH--HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           83 CCVLVYDVNSMKSFDNL--NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        83 ~~l~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .++++++..........  ..+...... .......++|+++|+||+|+.+.
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kp~ivv~NK~Dl~~~  132 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELS-EYNLRLTERPQIIVANKMDMPEA  132 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHH-HSCSSTTTSCBCBEEECTTSTTH
T ss_pred             hhhheeeecccccchhhhhhhhhhhccc-hhhhhccCCcchhhccccchHhH
Confidence            88888877654332221  122222222 22233346899999999999875

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.68  E-value=3.4e-16  Score=108.29  Aligned_cols=114  Identities=18%  Similarity=0.225  Sum_probs=82.1

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCC-CCC-----------------CCCceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKF-SNQ-----------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (156)
                      .++|+++|..++|||||+.+++...- ...                 .....+.......+..++  .+++++||||+.+
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~d   79 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGD   79 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGG
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhh
Confidence            46899999999999999999962210 000                 011112222233444455  6799999999999


Q ss_pred             ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (156)
Q Consensus        70 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  131 (156)
                      |.......++.+|++++|+|+.+....+....|.....     .   ++|.++++||+|...
T Consensus        80 F~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~-----~---~~p~~i~iNk~D~~~  133 (267)
T d2dy1a2          80 FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER-----L---GLPRMVVVTKLDKGG  133 (267)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH-----T---TCCEEEEEECGGGCC
T ss_pred             hhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhh-----c---ccccccccccccccc
Confidence            99999999999999999999998776665544443321     1   789999999999854

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.65  E-value=2.5e-16  Score=106.47  Aligned_cols=120  Identities=18%  Similarity=0.214  Sum_probs=80.3

Q ss_pred             cccceeEEEEEEcCCCCChhHHHHHHhcCC--CC-------------------------------CCCCCceeeEEEEEE
Q 031598            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKK--FS-------------------------------NQYKATIGADFLTKE   49 (156)
Q Consensus         3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~--~~-------------------------------~~~~~~~~~~~~~~~   49 (156)
                      ..++..+||+++|..++|||||+.+|+...  ..                               .......+.+.....
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            356778999999999999999999996311  00                               000111111211222


Q ss_pred             EEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-cEEEEEecCC
Q 031598           50 VQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNF-PFVVLGNKID  128 (156)
Q Consensus        50 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D  128 (156)
                      +...  ...++++|+||+..|-......+..+|++++|+|+.+...-+....  ..+...+      ++ .++++.||+|
T Consensus        84 ~~~~--~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~--~~~~~~~------gv~~iiv~vNK~D  153 (222)
T d1zunb3          84 FSTA--KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH--SYIASLL------GIKHIVVAINKMD  153 (222)
T ss_dssp             EECS--SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHH--HHHHHHT------TCCEEEEEEECTT
T ss_pred             Eecc--ceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHH--HHHHHHc------CCCEEEEEEEccc
Confidence            2223  3679999999999998888888899999999999998654333222  2222222      44 4889999999


Q ss_pred             CCCC
Q 031598          129 VDGG  132 (156)
Q Consensus       129 l~~~  132 (156)
                      +.+.
T Consensus       154 ~~~~  157 (222)
T d1zunb3         154 LNGF  157 (222)
T ss_dssp             TTTS
T ss_pred             cccc
Confidence            9876

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.65  E-value=8.6e-16  Score=101.96  Aligned_cols=122  Identities=17%  Similarity=0.156  Sum_probs=79.4

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC-----CCceeeEEEEEEEE-------------------ECCeEEEEE
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-----KATIGADFLTKEVQ-------------------FEDRLFTLQ   60 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-----~~~~~~~~~~~~~~-------------------~~~~~~~~~   60 (156)
                      +++.++|+++|..++|||||+++|.+.......     ..+....+......                   .......++
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            567789999999999999999999864322111     01111111111110                   111245799


Q ss_pred             EEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        61 i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ++||||+..|.......+..+|++++|+|+.+....+...+.+..+ ....     ..+++++.||+|+.++
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~-~~~~-----~~~iiv~inK~D~~d~  147 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QIIG-----QKNIIIAQNKIELVDK  147 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHHT-----CCCEEEEEECGGGSCH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHH-HHhc-----Cccceeeeecccchhh
Confidence            9999999999888888889999999999999864222222222222 2222     2358889999999875

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.64  E-value=1.1e-15  Score=102.20  Aligned_cols=123  Identities=16%  Similarity=0.140  Sum_probs=77.0

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCC---CCCcee--eEEEEEEEEE------------------------CC
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ---YKATIG--ADFLTKEVQF------------------------ED   54 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---~~~~~~--~~~~~~~~~~------------------------~~   54 (156)
                      ..++.++|+++|..++|||||+++|++......   ......  ..........                        ..
T Consensus         4 ~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (205)
T d2qn6a3           4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK   83 (205)
T ss_dssp             CCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE
T ss_pred             CCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeecccc
Confidence            345668999999999999999999986322100   000000  0000111100                        11


Q ss_pred             eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ....++++|+||+..|.......+..+|++++|+|+.+.-.-...++.+. +...+.     -.|++++.||+|+.+.
T Consensus        84 ~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~-~~~~~~-----i~~iIV~vNK~Dl~~~  155 (205)
T d2qn6a3          84 FLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFV-ALGIIG-----VKNLIIVQNKVDVVSK  155 (205)
T ss_dssp             EEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHH-HHHHTT-----CCCEEEEEECGGGSCH
T ss_pred             ceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHH-HHHHcC-----CceeeeccccCCCccc
Confidence            22468999999999998888888899999999999988531111122222 222222     2488999999999875

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.64  E-value=6.2e-16  Score=102.50  Aligned_cols=114  Identities=21%  Similarity=0.210  Sum_probs=63.6

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc-------------ccchh
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------------FQSLG   74 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~   74 (156)
                      ..+|+++|.+|+|||||+++|.+.+.........+.+..........   .+.+.|+++...             +....
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhh
Confidence            45899999999999999999998653222222222222222222222   344567766211             11122


Q ss_pred             hhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        75 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ......++++++++|++++..-. ...+++.+..    .   +.|+++|+||+|+..+
T Consensus       100 ~~~~~~~~~vi~viD~~~~~~~~-~~~~~~~l~~----~---~~piivv~NK~D~~~~  149 (195)
T d1svia_         100 ITTREELKAVVQIVDLRHAPSND-DVQMYEFLKY----Y---GIPVIVIATKADKIPK  149 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH----T---TCCEEEEEECGGGSCG
T ss_pred             hccccchhhhhhhhhcccccccc-cccccccccc----c---cCcceechhhccccCH
Confidence            23345679999999998654321 1233333322    1   6799999999998754

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=3.3e-17  Score=111.98  Aligned_cols=121  Identities=16%  Similarity=0.238  Sum_probs=79.9

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcC----------------------CC---------CCCCCCceeeEEEEEEEEEC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNK----------------------KF---------SNQYKATIGADFLTKEVQFE   53 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~----------------------~~---------~~~~~~~~~~~~~~~~~~~~   53 (156)
                      .++.++|+++|..++|||||+.+|+..                      .+         ..+.....+.+.....+..+
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~   82 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   82 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence            345689999999999999999998621                      00         00111222222223334444


Q ss_pred             CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHH-----HHHHHHHHHHHhcCCCCCCCCc-EEEEEecC
Q 031598           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFD-----NLNNWREEFLIQASPSDPDNFP-FVVLGNKI  127 (156)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~  127 (156)
                      +  ++++++||||+.+|......-+..+|++++|+|+.....-.     ........+...+      ++| +++++||+
T Consensus        83 ~--~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~------gv~~iiv~iNKm  154 (239)
T d1f60a3          83 K--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL------GVRQLIVAVNKM  154 (239)
T ss_dssp             S--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT------TCCEEEEEEECG
T ss_pred             C--EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc------CCCeEEEEEECC
Confidence            4  78999999999999999999999999999999998753210     0111111222222      454 88899999


Q ss_pred             CCCCCC
Q 031598          128 DVDGGN  133 (156)
Q Consensus       128 Dl~~~~  133 (156)
                      |+.+.+
T Consensus       155 D~~~~d  160 (239)
T d1f60a3         155 DSVKWD  160 (239)
T ss_dssp             GGGTTC
T ss_pred             CCCCCC
Confidence            998763

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.62  E-value=1.1e-15  Score=105.59  Aligned_cols=124  Identities=15%  Similarity=0.111  Sum_probs=76.7

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC-CCceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------chhhh
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVA   76 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~   76 (156)
                      ....++|+++|.+|+|||||+|++++++..... .+..+.+.........+  ..+.++||||-....       .....
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~  106 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKS  106 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHH
Confidence            345799999999999999999999988754322 22222333344445555  579999999943221       11111


Q ss_pred             --heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 --FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 --~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                        .....+++++|++.+...--......+..+...+...-  ..++++|.||+|...+
T Consensus       107 ~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~--~~~~ivv~t~~D~~~~  162 (257)
T d1h65a_         107 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGI--WNKAIVALTHAQFSPP  162 (257)
T ss_dssp             HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGG--GGGEEEEEECCSCCCG
T ss_pred             HHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhh--hhCEEEEEECcccCCc
Confidence              12456899999888754211222333334444333211  2479999999999875

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.61  E-value=3.7e-17  Score=110.92  Aligned_cols=119  Identities=16%  Similarity=0.224  Sum_probs=76.1

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCC-------------------------------CCCCCCCceeeEEEEEEEEECCe
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKK-------------------------------FSNQYKATIGADFLTKEVQFEDR   55 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   55 (156)
                      +.++|+++|..++|||||+.+|+...                               .........+.+.....+  ...
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~--~~~   79 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF--ETK   79 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE--ECS
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEE--ecC
Confidence            46899999999999999999885210                               001111222222222233  334


Q ss_pred             EEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHH---HHH--HHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNL---NNW--REEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      .+.++++||||+..|.......++.+|++++|+|+.+...-+..   ...  ...+...+.     ..++|++.||+|+.
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~-----~~~iIv~iNK~D~~  154 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMG-----LDQLIVAVNKMDLT  154 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTT-----CTTCEEEEECGGGS
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhC-----CCceEEEEEcccCC
Confidence            47899999999999999999999999999999999986322111   111  111222222     33689999999998


Q ss_pred             CC
Q 031598          131 GG  132 (156)
Q Consensus       131 ~~  132 (156)
                      ..
T Consensus       155 ~~  156 (224)
T d1jnya3         155 EP  156 (224)
T ss_dssp             SS
T ss_pred             Cc
Confidence            64

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.4e-15  Score=108.97  Aligned_cols=114  Identities=16%  Similarity=0.248  Sum_probs=67.3

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCc---eeeEEEEEEEEECCeEEEEEEEeCCCcccccchhh-----hh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT---IGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV-----AF   77 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-----~~   77 (156)
                      ...++|+|+|.+|+|||||+|+|.+..........   .+++.....+...+ ...+.+|||||.........     ..
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~  132 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMK  132 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhh
Confidence            34699999999999999999999986543222111   11122122222222 23578999999544332222     23


Q ss_pred             eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      +..+|.++++.|..-...  . ......+...       +.|+++|.||+|..
T Consensus       133 ~~~~d~~l~~~~~~~~~~--d-~~l~~~l~~~-------~k~~~~V~nK~D~~  175 (400)
T d1tq4a_         133 FYEYDFFIIISATRFKKN--D-IDIAKAISMM-------KKEFYFVRTKVDSD  175 (400)
T ss_dssp             GGGCSEEEEEESSCCCHH--H-HHHHHHHHHT-------TCEEEEEECCHHHH
T ss_pred             hhcceEEEEecCCCCCHH--H-HHHHHHHHHc-------CCCEEEEEeCcccc
Confidence            456788888876543222  1 2223333221       67999999999974

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.55  E-value=7.8e-15  Score=100.48  Aligned_cols=120  Identities=14%  Similarity=0.120  Sum_probs=64.5

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCC-------------------------------CCCCCCceeeEEEEEEEEEC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQFE   53 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   53 (156)
                      .++.++|+++|..++|||||+.+|+..--                               ..........+.....+.. 
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-   99 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-   99 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc-
Confidence            34568999999999999999999942100                               0000111111111122222 


Q ss_pred             CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHH------HHHHHHHHHHHhcCCCCCCCC-cEEEEEec
Q 031598           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFD------NLNNWREEFLIQASPSDPDNF-PFVVLGNK  126 (156)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK  126 (156)
                       ....+.++||||+..|..........+|++++|+|+.+...-.      ...+ .-.+....      ++ +++++.||
T Consensus       100 -~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e-~l~l~~~~------~i~~iiv~iNK  171 (245)
T d1r5ba3         100 -EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTRE-HAVLARTQ------GINHLVVVINK  171 (245)
T ss_dssp             -SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHH-HHHHHHHT------TCSSEEEEEEC
T ss_pred             -ccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHH-HHHHHHHc------CCCeEEEEEEc
Confidence             3357999999999999988888889999999999998753111      0111 11122222      34 48899999


Q ss_pred             CCCCCCC
Q 031598          127 IDVDGGN  133 (156)
Q Consensus       127 ~Dl~~~~  133 (156)
                      +|+...+
T Consensus       172 mD~~~~~  178 (245)
T d1r5ba3         172 MDEPSVQ  178 (245)
T ss_dssp             TTSTTCS
T ss_pred             CCCCccc
Confidence            9998654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=5.8e-13  Score=86.52  Aligned_cols=115  Identities=17%  Similarity=0.144  Sum_probs=69.1

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCCCCCC-CCceeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cchhhh
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVA   76 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~   76 (156)
                      ..-.|+++|.+++|||||+|+|.+.+..... .+.............+.  ..+..+|+++....         ......
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhcccc
Confidence            4456899999999999999999987643222 22222222233333344  45667888884322         112222


Q ss_pred             heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ....+++++++.|..+...  ....+...+.   . .   ..|.++|+||+|....
T Consensus        82 ~~~~~~~~l~~~d~~~~~~--~~~~~~~~l~---~-~---~~~~i~v~~k~d~~~~  128 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTP--DDEMVLNKLR---E-G---KAPVILAVNKVDNVQE  128 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCH--HHHHHHHHHH---S-S---SSCEEEEEESTTTCCC
T ss_pred             chhhcceeEEEEecCccch--hHHHHHHHhh---h-c---cCceeeeeeeeeccch
Confidence            3356788888888776432  2222233232   1 1   5689999999998876

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=7.6e-13  Score=86.27  Aligned_cols=119  Identities=21%  Similarity=0.113  Sum_probs=56.8

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC-cccccc----------h
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-QERFQS----------L   73 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-~~~~~~----------~   73 (156)
                      ....++|+++|.+++|||||+|+|.+.+.........+............. ......+.++ ......          .
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG-KRLVDLPGYGYAEVPEEMKRKWQRALGE   91 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT-EEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccc-cceeeeecccccchhhhhhhhhhhhhhh
Confidence            445699999999999999999999987654332222222222222222222 2222223322 111110          1


Q ss_pred             hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        74 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ..........++.+.+......... ..+...+...       ..++++++||+|+.+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~v~~k~D~~~~  142 (188)
T d1puia_          92 YLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVDS-------NIAVLVLLTKADKLAS  142 (188)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT-------TCCEEEEEECGGGSCH
T ss_pred             hhhhhhheeEEEEeecccccchhHH-HHHHHHhhhc-------cccccchhhhhhccCH
Confidence            1111223445556666655433222 2333333221       5689999999999875

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=2.5e-11  Score=84.97  Aligned_cols=119  Identities=17%  Similarity=0.290  Sum_probs=70.6

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCC-CCCCCCceeeEEEEEEEE-------E---CC---------------------
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQ-------F---ED---------------------   54 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~-------~---~~---------------------   54 (156)
                      ...+|+|+|.-++|||||||+|++.++ +....++...........       .   .+                     
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            346899999999999999999999885 332222221111111100       0   00                     


Q ss_pred             ------------------eEEEEEEEeCCCccc-------------ccchhhhheeccc-EEEEEEECCChhhHHHHHHH
Q 031598           55 ------------------RLFTLQIWDTAGQER-------------FQSLGVAFYRGAD-CCVLVYDVNSMKSFDNLNNW  102 (156)
Q Consensus        55 ------------------~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~-~~l~v~d~~~~~~~~~~~~~  102 (156)
                                        ....+.++|+||...             ...+...++...+ ++++|.++.....-.....+
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                              001378999999321             1233444555565 55666666665544444444


Q ss_pred             HHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598          103 REEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus       103 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .+.+    ...   ..++++|.||+|+.++
T Consensus       185 ~~~~----~~~---~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         185 AKEV----DPQ---GQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHH----CTT---CSSEEEEEECGGGSCT
T ss_pred             HHHh----CcC---CCceeeEEeccccccc
Confidence            4444    222   4589999999999876

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.12  E-value=1.4e-10  Score=81.34  Aligned_cols=27  Identities=26%  Similarity=0.667  Sum_probs=24.3

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcCCC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNKKF   33 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~~~   33 (156)
                      ...+|+|+|..++|||||||+|++.++
T Consensus        23 ~lP~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          23 DLPQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999999876

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.10  E-value=9.7e-11  Score=82.67  Aligned_cols=84  Identities=15%  Similarity=0.184  Sum_probs=46.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCce------eeEEEEEEE----------------EECCeEEEEEEEeCCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI------GADFLTKEV----------------QFEDRLFTLQIWDTAG   66 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~------~~~~~~~~~----------------~~~~~~~~~~i~D~~g   66 (156)
                      ++|+++|.|+||||||+|++.+.+......|..      |........                ........++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            479999999999999999999876432222222      211111110                0011235799999999


Q ss_pred             cc-------cccchhhhheecccEEEEEEECCC
Q 031598           67 QE-------RFQSLGVAFYRGADCCVLVYDVNS   92 (156)
Q Consensus        67 ~~-------~~~~~~~~~~~~~~~~l~v~d~~~   92 (156)
                      --       .........++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            32       123333345678999999999874

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.06  E-value=9.2e-11  Score=81.34  Aligned_cols=83  Identities=24%  Similarity=0.174  Sum_probs=53.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCe------------E---EEEEEEeCCCc------
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR------------L---FTLQIWDTAGQ------   67 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~i~D~~g~------   67 (156)
                      ++|.++|.|++|||||++++.+.+......|..+.+.....+.+++.            +   ..+.++|+||-      
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~   82 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCccc
Confidence            68999999999999999999987654322333333333333333322            1   25889999992      


Q ss_pred             -ccccchhhhheecccEEEEEEECC
Q 031598           68 -ERFQSLGVAFYRGADCCVLVYDVN   91 (156)
Q Consensus        68 -~~~~~~~~~~~~~~~~~l~v~d~~   91 (156)
                       .......-..++.||+++.|+|+.
T Consensus        83 g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          83 GEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             CCCccHHHHHHHHhccceEEEeecc
Confidence             223334456678999999999874

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.98  E-value=4.7e-10  Score=78.39  Aligned_cols=87  Identities=20%  Similarity=0.177  Sum_probs=57.6

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCe---------------EEEEEEEeCCCcc-
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQE-   68 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~-   68 (156)
                      ...++|.++|.|+||||||.+.+.+...+ ....|..+.+.....+.+++.               ...+.+.|+||-. 
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            35689999999999999999999976532 111222222222233333331               2368999999822 


Q ss_pred             ------cccchhhhheecccEEEEEEECCC
Q 031598           69 ------RFQSLGVAFYRGADCCVLVYDVNS   92 (156)
Q Consensus        69 ------~~~~~~~~~~~~~~~~l~v~d~~~   92 (156)
                            .........++.+|++++|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence                  223445566789999999999866

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.87  E-value=6.1e-10  Score=75.13  Aligned_cols=69  Identities=13%  Similarity=-0.024  Sum_probs=41.8

Q ss_pred             EEEEEeCCCcccccchhhhhe-----ecccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598           58 TLQIWDTAGQERFQSLGVAFY-----RGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (156)
Q Consensus        58 ~~~i~D~~g~~~~~~~~~~~~-----~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  129 (156)
                      .+.++|+||+..+........     ...+.+++++|+..   +..+..............      ..|.++|+||+|+
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~------~~~~ivvinK~D~  169 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL------GATTIPALNKVDL  169 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH------TSCEEEEECCGGG
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh------CCCceeeeecccc
Confidence            488999999876543322221     23568889998764   333322221122222222      6799999999999


Q ss_pred             CCC
Q 031598          130 DGG  132 (156)
Q Consensus       130 ~~~  132 (156)
                      ...
T Consensus       170 ~~~  172 (244)
T d1yrba1         170 LSE  172 (244)
T ss_dssp             CCH
T ss_pred             ccH
Confidence            975

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.78  E-value=3.7e-09  Score=72.92  Aligned_cols=59  Identities=24%  Similarity=0.389  Sum_probs=37.0

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (156)
                      ...++++|+|.|++|||||+|+|.+.+.... .+..|.+.....+..+.   .+.++||||..
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~-~~~pG~Tr~~~~i~~~~---~~~l~DTPGi~  168 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVGK---ELELLDTPGIL  168 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEE-CCcccccccceEEECCC---CeEEecCCCcc
Confidence            4568999999999999999999998775332 34444444333333332   48899999943

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=2.9e-08  Score=69.96  Aligned_cols=24  Identities=21%  Similarity=0.526  Sum_probs=21.9

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~   29 (156)
                      .+.++|.|.|+||+|||||+++|.
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHH
Confidence            357899999999999999999996

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.52  E-value=3.1e-08  Score=69.73  Aligned_cols=112  Identities=14%  Similarity=0.167  Sum_probs=63.2

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcC----CCC----------------------CCCCCceeeEEEEEEEEECC-----
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNK----KFS----------------------NQYKATIGADFLTKEVQFED-----   54 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~----~~~----------------------~~~~~~~~~~~~~~~~~~~~-----   54 (156)
                      .+.++|.|.|+||+|||||+++|...    ...                      +..........+.......+     
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~  128 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  128 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence            45689999999999999999998742    100                      00000001112222211111     


Q ss_pred             -------------eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 031598           55 -------------RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV  121 (156)
Q Consensus        55 -------------~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  121 (156)
                                   .++.+.++.|.|.-.....   ....+|.+++|......+..+....   -+++.         +=+
T Consensus       129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~---gilE~---------aDi  193 (323)
T d2qm8a1         129 AAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKK---GIFEL---------ADM  193 (323)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCT---THHHH---------CSE
T ss_pred             hHHHHHHHHhhccCCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhh---hHhhh---------hhe
Confidence                         1256788899985443333   3344999999999888765544322   22222         239


Q ss_pred             EEEecCCCCCC
Q 031598          122 VLGNKIDVDGG  132 (156)
Q Consensus       122 lv~nK~Dl~~~  132 (156)
                      +|+||+|+.+.
T Consensus       194 ~vvNKaD~~~~  204 (323)
T d2qm8a1         194 IAVNKADDGDG  204 (323)
T ss_dssp             EEEECCSTTCC
T ss_pred             eeEeccccccc
Confidence            99999998765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.48  E-value=3e-08  Score=66.11  Aligned_cols=59  Identities=22%  Similarity=0.185  Sum_probs=35.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCCC------CCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSNQ------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (156)
                      ..+++|.+|+|||||||+|.+.....+      ......++.....+..++.   -.++||||...+.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            568999999999999999986543211      1222223333444455443   3578999965543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.38  E-value=4e-08  Score=65.66  Aligned_cols=58  Identities=21%  Similarity=0.209  Sum_probs=32.2

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCCCCC------CCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKKFSN------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (156)
                      ..+++|++|+|||||||+|.+.....      .......++.....+..++ +   .++||||...+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~g-g---~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG-G---LVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETT-E---EEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCC-C---EEEECCcccccc
Confidence            45799999999999999998763211      1112211222233334444 2   377999976654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=1.2e-05  Score=53.37  Aligned_cols=25  Identities=28%  Similarity=0.542  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      ..-.+|.|.-|||||||+++++...
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhcC
Confidence            3446899999999999999998753

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.04  E-value=1.1e-06  Score=55.86  Aligned_cols=23  Identities=48%  Similarity=0.920  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +||+++|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            48999999999999999999864

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.92  E-value=2.8e-06  Score=53.63  Aligned_cols=27  Identities=26%  Similarity=0.481  Sum_probs=23.3

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +++..+|++.|++||||||+.+.|...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            456789999999999999999998643

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.90  E-value=2.6e-06  Score=54.16  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=21.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..+|+|.|++|||||||++.|...
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999753

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.88  E-value=2.5e-05  Score=51.15  Aligned_cols=65  Identities=22%  Similarity=0.160  Sum_probs=36.6

Q ss_pred             EEEEEEeCCCcccccchhhh----h--eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598           57 FTLQIWDTAGQERFQSLGVA----F--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~----~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  130 (156)
                      +.+.++||+|..........    .  ....+-+++|.|......-.   .....+.+.+..       --++.||.|..
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~---~~~~~f~~~~~~-------~~~I~TKlDe~  162 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEAL---SVARAFDEKVGV-------TGLVLTKLDGD  162 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHH---HHHHHHHHHTCC-------CEEEEECGGGC
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHH---HHHHHHHhhCCC-------CeeEEeecCcc
Confidence            46899999994433322222    1  13457889999987764221   223333333221       24778999965


Q ss_pred             C
Q 031598          131 G  131 (156)
Q Consensus       131 ~  131 (156)
                      .
T Consensus       163 ~  163 (207)
T d1ls1a2         163 A  163 (207)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.84  E-value=3.4e-06  Score=53.11  Aligned_cols=23  Identities=35%  Similarity=0.648  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..+|+++|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.82  E-value=3.8e-05  Score=50.23  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=18.5

Q ss_pred             eEEEEEEcCCCCChhHHHHHHh
Q 031598            8 LLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~   29 (156)
                      ..-|+++|++|+||||.+-+|.
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3567899999999999987775

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=5.4e-06  Score=52.04  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      -++|+|.+|||||||++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999974

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.76  E-value=8.2e-06  Score=52.71  Aligned_cols=26  Identities=27%  Similarity=0.529  Sum_probs=22.8

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhc
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..+.++|+++|+|||||||+...|..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999999998874

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.73  E-value=8.5e-06  Score=51.89  Aligned_cols=21  Identities=24%  Similarity=0.585  Sum_probs=19.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHh
Q 031598            9 LKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~   29 (156)
                      +||+++|+|||||||+...|.
T Consensus         1 m~I~i~G~pGSGKsT~a~~La   21 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIV   21 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999998875

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.72  E-value=1e-05  Score=52.14  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=20.9

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +++..|+++|++||||||+++.|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3346789999999999999998864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.70  E-value=1e-05  Score=49.94  Aligned_cols=21  Identities=24%  Similarity=0.667  Sum_probs=18.6

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      |++.|++||||||+++.+...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            688999999999999998643

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.70  E-value=1.1e-05  Score=51.93  Aligned_cols=24  Identities=21%  Similarity=0.454  Sum_probs=20.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +.++|+++|+|||||||....|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999988863

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.70  E-value=6.9e-06  Score=52.86  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=20.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .+++|+++|++||||||+...|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999988763

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.68  E-value=1.1e-05  Score=51.56  Aligned_cols=22  Identities=23%  Similarity=0.611  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ++|+++|+|||||||++..|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.67  E-value=1.2e-05  Score=51.25  Aligned_cols=22  Identities=27%  Similarity=0.602  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +||+++|++||||||+...|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998863

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.64  E-value=1.4e-05  Score=51.04  Aligned_cols=23  Identities=17%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .++|+|+|++||||||+...|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=1.4e-05  Score=50.91  Aligned_cols=21  Identities=24%  Similarity=0.474  Sum_probs=19.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHh
Q 031598            9 LKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~   29 (156)
                      ++|+++|++||||||....|.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999998875

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.60  E-value=1.6e-05  Score=49.77  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      |++.|++||||||+++.|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998743

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=1.8e-05  Score=49.07  Aligned_cols=22  Identities=23%  Similarity=0.578  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988743

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.55  E-value=2e-05  Score=49.50  Aligned_cols=20  Identities=35%  Similarity=0.561  Sum_probs=17.8

Q ss_pred             EEEEcCCCCChhHHHHHHhc
Q 031598           11 VIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~   30 (156)
                      +.|+|.+|||||||++++..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999998864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=8.8e-06  Score=52.10  Aligned_cols=21  Identities=33%  Similarity=0.773  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      |+++||+|+||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999854

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.50  E-value=3.9e-05  Score=48.24  Aligned_cols=24  Identities=13%  Similarity=0.231  Sum_probs=20.3

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~   29 (156)
                      .+-.-|.++|.+||||||+.+.|.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            445778999999999999988776

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=3.4e-05  Score=49.58  Aligned_cols=23  Identities=35%  Similarity=0.548  Sum_probs=20.0

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ++.|+++|++||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999988753

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=2.5e-05  Score=49.31  Aligned_cols=21  Identities=38%  Similarity=0.691  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      .|++.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998874

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=4.3e-05  Score=48.49  Aligned_cols=26  Identities=19%  Similarity=0.344  Sum_probs=21.5

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +...=|+++|.+||||||++.++...
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            34567899999999999999998643

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=4.2e-05  Score=50.84  Aligned_cols=23  Identities=30%  Similarity=0.559  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -++++|++|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            36899999999999999987653

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=4.3e-05  Score=47.81  Aligned_cols=20  Identities=25%  Similarity=0.591  Sum_probs=17.7

Q ss_pred             EEEEcCCCCChhHHHHHHhc
Q 031598           11 VIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~   30 (156)
                      ++++|++||||||+.+.|..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            57799999999999999864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=4.4e-05  Score=51.12  Aligned_cols=23  Identities=30%  Similarity=0.362  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      +++|+|++|||||||++.+.+-.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.40  E-value=5.7e-05  Score=50.78  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +..|++.|+|||||||++..+.+.
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            345899999999999999998754

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.39  E-value=3.4e-05  Score=48.45  Aligned_cols=21  Identities=24%  Similarity=0.498  Sum_probs=18.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHh
Q 031598            9 LKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~   29 (156)
                      .+|+++|++||||||+.+.+.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            368999999999999988775

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=4.6e-05  Score=48.86  Aligned_cols=21  Identities=33%  Similarity=0.725  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      |+|+|++|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999754

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.38  E-value=4.3e-05  Score=50.74  Aligned_cols=23  Identities=35%  Similarity=0.460  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            46899999999999999888764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.38  E-value=4.9e-05  Score=48.07  Aligned_cols=19  Identities=32%  Similarity=0.494  Sum_probs=17.2

Q ss_pred             EEEEcCCCCChhHHHHHHh
Q 031598           11 VIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~   29 (156)
                      |+|.|++||||||+++.|.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6889999999999998875

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.37  E-value=4.8e-05  Score=49.24  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=19.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .=|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3478999999999999998873

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.36  E-value=5.2e-05  Score=47.57  Aligned_cols=21  Identities=24%  Similarity=0.567  Sum_probs=18.4

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      |++.|++||||||+.+.+...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999888654

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.36  E-value=5.1e-05  Score=49.37  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+..
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            36899999999999999998765

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.36  E-value=4.7e-05  Score=47.64  Aligned_cols=20  Identities=25%  Similarity=0.557  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCChhHHHHHHh
Q 031598           10 KVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~   29 (156)
                      +|+++|++||||||+...|.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            58999999999999988875

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.34  E-value=5.6e-05  Score=50.45  Aligned_cols=22  Identities=23%  Similarity=0.522  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChhHHHHHHhcCC
Q 031598           11 VIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~   32 (156)
                      ++++|++|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5789999999999999998765

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.34  E-value=5.6e-05  Score=48.15  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      |+++|++||||||+++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999998754

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00022  Score=48.56  Aligned_cols=62  Identities=26%  Similarity=0.205  Sum_probs=39.2

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcCCCCC-----CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN-----QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (156)
                      .+..-|.|+|+.++|||+|+|.|++....-     ....|.|.-...... ..+....+.++||.|..
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEeccccc
Confidence            345677999999999999999999765321     112233332222211 23344578899999954

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.33  E-value=6.2e-05  Score=50.40  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      =.++++|++|||||||++.+.+-.
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            367999999999999999998654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.33  E-value=6e-05  Score=50.31  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -+.++|++|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            36899999999999999998764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=5.4e-05  Score=49.43  Aligned_cols=21  Identities=33%  Similarity=0.569  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      |+++||+|||||||+++|...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999999854

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.32  E-value=5.8e-05  Score=50.89  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|++|||||||++.+.+-.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            68999999999999999998654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.30  E-value=6.7e-05  Score=47.91  Aligned_cols=24  Identities=42%  Similarity=0.313  Sum_probs=20.5

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..+=|+|-|++|||||||++.|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456688999999999999998863

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.30  E-value=8.7e-05  Score=50.49  Aligned_cols=50  Identities=22%  Similarity=0.007  Sum_probs=36.7

Q ss_pred             hhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        73 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      .....++.+|+++.|+|+.+|.+...-  .+.   .+++     +.|.++|+||+|+.+.
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~~--~l~---~~~~-----~Kp~IlVlNK~DLv~~   57 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRNP--MIE---DILK-----NKPRIMLLNKADKADA   57 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSCH--HHH---HHCS-----SSCEEEEEECGGGSCH
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCCH--HHH---HHHc-----CCCeEEEEECccCCch
Confidence            344568899999999999998664431  222   2233     6699999999999875

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=8.8e-05  Score=47.70  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=19.9

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..-|+++|++||||||+...|..
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998864

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=7.3e-05  Score=50.33  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|++|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            57999999999999999998764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.27  E-value=7.6e-05  Score=46.70  Aligned_cols=21  Identities=24%  Similarity=0.446  Sum_probs=18.1

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      |++.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567799999999999998754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=7.6e-05  Score=48.00  Aligned_cols=20  Identities=35%  Similarity=0.745  Sum_probs=18.2

Q ss_pred             EEEEcCCCCChhHHHHHHhc
Q 031598           11 VIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~   30 (156)
                      |+|+|++||||||++++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998864

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.25  E-value=0.00011  Score=49.23  Aligned_cols=26  Identities=27%  Similarity=0.454  Sum_probs=22.4

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .+...|++.|++|+|||++++.+.+.
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhhc
Confidence            34577999999999999999999854

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=6.8e-05  Score=50.06  Aligned_cols=23  Identities=26%  Similarity=0.340  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            36899999999999999998765

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.23  E-value=8.6e-05  Score=49.56  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -+.++|++|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            46899999999999999998765

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.22  E-value=4e-05  Score=49.36  Aligned_cols=23  Identities=26%  Similarity=0.496  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .-|+++|+|||||||+...|...
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            44789999999999999988643

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=8.6e-05  Score=50.79  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|+.|||||||++.+.+.-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            47999999999999999998764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.21  E-value=8.3e-05  Score=49.31  Aligned_cols=25  Identities=28%  Similarity=0.595  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ....+++.|+||+||||+++.+.+.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3567899999999999999999854

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.19  E-value=5.5e-05  Score=50.16  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=20.3

Q ss_pred             EEEEcCCCCChhHHHHHHhcCC
Q 031598           11 VIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~   32 (156)
                      ++++|++|||||||++.+.+-.
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCc
Confidence            6899999999999999999875

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.17  E-value=0.00011  Score=46.14  Aligned_cols=19  Identities=21%  Similarity=0.539  Sum_probs=17.2

Q ss_pred             EEEEcCCCCChhHHHHHHh
Q 031598           11 VIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~   29 (156)
                      |+++|++||||||+.+.+.
T Consensus         5 Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7889999999999988885

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.15  E-value=0.00012  Score=46.92  Aligned_cols=28  Identities=29%  Similarity=0.507  Sum_probs=23.5

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..++++-|+|-|..||||||+++.|...
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            4455678999999999999999998743

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.13  E-value=0.00012  Score=48.94  Aligned_cols=22  Identities=27%  Similarity=0.520  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChhHHHHHHhcCC
Q 031598           11 VIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~   32 (156)
                      +.++|+.|||||||++.+.+-.
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6899999999999999999875

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.12  E-value=0.00014  Score=47.51  Aligned_cols=24  Identities=17%  Similarity=0.346  Sum_probs=20.4

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +.+.|+|-|++||||||....|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            347789999999999999988864

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.11  E-value=0.00012  Score=48.40  Aligned_cols=24  Identities=33%  Similarity=0.570  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++.|+||+||||+++.+...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            346899999999999999998754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.11  E-value=8e-05  Score=50.20  Aligned_cols=23  Identities=35%  Similarity=0.414  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      +++++|++|||||||++.+.+-.
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHhcC
Confidence            68999999999999999887654

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.10  E-value=0.00013  Score=46.16  Aligned_cols=20  Identities=35%  Similarity=0.685  Sum_probs=17.0

Q ss_pred             EE-EEEcCCCCChhHHHHHHh
Q 031598           10 KV-IILGDSGVGKTSLMNQYV   29 (156)
Q Consensus        10 ~i-~v~G~~~~GKstli~~l~   29 (156)
                      || +|.|.+||||||+++.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            55 567999999999998885

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=9.4e-05  Score=49.16  Aligned_cols=22  Identities=23%  Similarity=0.569  Sum_probs=19.8

Q ss_pred             EEEEcCCCCChhHHHHHHhcCC
Q 031598           11 VIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~   32 (156)
                      ++++|+.|||||||++.+.+-.
T Consensus        28 ~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHTSC
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6899999999999999998753

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=7.1e-05  Score=47.75  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=19.0

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..|.++|.+||||||+.+.|..
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5678999999999999998863

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.06  E-value=0.00015  Score=48.91  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -+.++|++|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            46899999999999999998764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.06  E-value=6.3e-05  Score=50.27  Aligned_cols=23  Identities=39%  Similarity=0.549  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47899999999999999999865

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.05  E-value=0.00021  Score=47.57  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChhHHHHHHhcCC
Q 031598           11 VIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~   32 (156)
                      +.++|+.|+|||||++.+.+..
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999999875

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00024  Score=46.15  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=19.2

Q ss_pred             eEEEEEEcCCCCChhHHHHHHh
Q 031598            8 LLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~   29 (156)
                      ++-|+|.|.+|||||||.+.|.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4668999999999999998874

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.99  E-value=0.00034  Score=43.52  Aligned_cols=24  Identities=33%  Similarity=0.505  Sum_probs=20.1

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..-|++-|+-|+|||||++.+...
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEecCCCccHHHHHHHHHhh
Confidence            345788999999999999998744

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00025  Score=45.73  Aligned_cols=24  Identities=29%  Similarity=0.602  Sum_probs=20.6

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..-+++++|++|+|||++++.+..
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHH
Confidence            345899999999999999988874

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.96  E-value=0.00027  Score=47.54  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChhHHHHHHhcCC
Q 031598           11 VIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~~   32 (156)
                      +.++|+.|||||||++.+.+..
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            5899999999999999999875

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.95  E-value=0.00027  Score=47.14  Aligned_cols=26  Identities=23%  Similarity=0.400  Sum_probs=22.0

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .....+++.|++|+|||++++.+...
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHH
Confidence            34468999999999999999998754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.91  E-value=0.00027  Score=46.44  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..+++.|++|+||||+++.+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999988753

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.90  E-value=0.0002  Score=49.52  Aligned_cols=25  Identities=28%  Similarity=0.570  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +...++++||+|||||.|++.+...
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhc
Confidence            3467899999999999999999854

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00031  Score=47.61  Aligned_cols=25  Identities=28%  Similarity=0.497  Sum_probs=21.0

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..-+++++|++|+|||++++.|...
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHH
Confidence            3468999999999999999988743

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.00028  Score=46.91  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..+++.|++|+||||++..+.+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999999865

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.84  E-value=0.00024  Score=49.48  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .+|+|.|+.||||||+++.++..-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            569999999999999999998654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.79  E-value=0.00036  Score=46.72  Aligned_cols=24  Identities=33%  Similarity=0.524  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++.|++|+|||++++.+.+.
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHHH
Confidence            346999999999999999999964

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.00041  Score=46.64  Aligned_cols=24  Identities=25%  Similarity=0.451  Sum_probs=21.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++.|++|+|||++++.+.+.
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            457999999999999999999865

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.72  E-value=0.00038  Score=46.43  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=19.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ..++|.|++|+|||||+.++..
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            3578999999999999998874

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.71  E-value=0.00068  Score=43.15  Aligned_cols=25  Identities=20%  Similarity=0.260  Sum_probs=21.0

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .++=|+|.|.+||||||+++.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            3567889999999999999988654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00047  Score=46.36  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++.|++|+|||++++.+...
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            356899999999999999999854

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00043  Score=44.89  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      =|+|.|++||||+|....|...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3677799999999998887643

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.70  E-value=0.0004  Score=46.52  Aligned_cols=21  Identities=33%  Similarity=0.488  Sum_probs=17.5

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      +++.|++|+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999998754

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.66  E-value=0.00068  Score=44.10  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +..-|.+.|.+||||||+.+.|..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446789999999999999998863

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.65  E-value=0.00092  Score=43.64  Aligned_cols=25  Identities=20%  Similarity=0.429  Sum_probs=20.4

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHh
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~   29 (156)
                      +.++.-|+++|+.|+||||.+-+|.
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            3445678999999999999877765

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.00042  Score=45.94  Aligned_cols=24  Identities=21%  Similarity=0.443  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..++++.|++|+||||++..+...
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999988753

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.63  E-value=0.00056  Score=44.01  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999987763

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.00054  Score=44.81  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..+++.|++|+||||+++.+...
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHHH
Confidence            45899999999999999887643

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00055  Score=44.90  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..+++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            34899999999999999988754

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00085  Score=46.27  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=21.3

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHh
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~   29 (156)
                      ..+.++=|.|.|.+||||||+.+.|.
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            34567889999999999999987764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.53  E-value=0.00081  Score=43.84  Aligned_cols=23  Identities=17%  Similarity=0.407  Sum_probs=15.1

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHh
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~   29 (156)
                      .+.-|+++|++|+||||.+-+|.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            34567889999999999987775

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.00069  Score=44.28  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .++++.|++|+||||++..+.+.
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHH
Confidence            35899999999999999999754

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.0012  Score=42.98  Aligned_cols=24  Identities=25%  Similarity=0.599  Sum_probs=20.0

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~   29 (156)
                      ..+.-|+++|++|+||||.+-+|.
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            334567899999999999998876

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.41  E-value=0.00081  Score=45.34  Aligned_cols=25  Identities=32%  Similarity=0.408  Sum_probs=21.7

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      ...|++.|++|+|||+|++.+.+.-
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            4569999999999999999998653

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.35  E-value=0.00083  Score=48.65  Aligned_cols=23  Identities=26%  Similarity=0.614  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .-||+++||+|||||-|+++|..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999999864

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.00099  Score=43.06  Aligned_cols=20  Identities=40%  Similarity=0.556  Sum_probs=17.4

Q ss_pred             EEEEcCCCCChhHHHHHHhc
Q 031598           11 VIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~   30 (156)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999988763

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.33  E-value=0.0012  Score=45.93  Aligned_cols=27  Identities=22%  Similarity=0.580  Sum_probs=23.9

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +...++|.|=|..|+||||+++.|...
T Consensus         2 ~m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           2 KMGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             CccceEEEEECCCCCCHHHHHHHHHHH
Confidence            456799999999999999999999864

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.33  E-value=0.0039  Score=41.05  Aligned_cols=49  Identities=16%  Similarity=0.123  Sum_probs=34.0

Q ss_pred             heecccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 FYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 ~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ...+.|.+++|+++.+|. +...+..++-..    ...   +++.++|+||+||.++
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a----~~~---~i~pvIvlnK~DL~~~   56 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLV----EAN---DIQPIICITKMDLIED   56 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHH----HTT---TCEEEEEEECGGGCCC
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHH----HHc---CCCEEEEEeccccccc
Confidence            357789999999998874 334344333322    112   7899999999999875

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0008  Score=44.16  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...|+|-|..||||||+++.|...
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999988753

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0018  Score=44.68  Aligned_cols=26  Identities=27%  Similarity=0.450  Sum_probs=21.4

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHHhc
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .++.-.++++|++|+|||.|+..+..
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHh
Confidence            33445789999999999999998874

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.22  E-value=0.0017  Score=40.98  Aligned_cols=24  Identities=46%  Similarity=0.684  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .-|++.|++|+||||+...|..+.
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            568999999999999999998765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.17  E-value=0.0038  Score=40.96  Aligned_cols=49  Identities=18%  Similarity=0.146  Sum_probs=34.0

Q ss_pred             heecccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598           77 FYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (156)
Q Consensus        77 ~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  132 (156)
                      ...+.|.+++|+.+.+|+ +...+.+++-... .   .   +++.++|+||+||.++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~-~---~---~i~pvIvlnK~DL~~~   56 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAE-K---N---ELETVMVINKMDLYDE   56 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHH-H---T---TCEEEEEECCGGGCCH
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHH-H---c---CCCEEEEEeCcccCCH
Confidence            357789999999988865 3333444333222 1   1   7899999999999865

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0015  Score=41.68  Aligned_cols=23  Identities=17%  Similarity=0.234  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      -+.|.|++|+|||+|+..+...-
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            35899999999999999887543

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.0023  Score=43.61  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=20.0

Q ss_pred             cceeEEEEEEcCCCCChhHHHHHH
Q 031598            5 RRTLLKVIILGDSGVGKTSLMNQY   28 (156)
Q Consensus         5 ~~~~~~i~v~G~~~~GKstli~~l   28 (156)
                      ..+++=|.|.|.+|||||||...+
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHH
Confidence            445677899999999999988765

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=96.11  E-value=0.0023  Score=44.58  Aligned_cols=25  Identities=20%  Similarity=0.397  Sum_probs=22.6

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +.++|.|=|..|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            5789999999999999999998854

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.11  E-value=0.00082  Score=46.67  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=19.1

Q ss_pred             EEEEEEcCCCCChhHHHHHHh
Q 031598            9 LKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~   29 (156)
                      -.+++.|++|+|||++++++.
T Consensus        29 h~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHH
Confidence            368999999999999999885

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=96.11  E-value=0.0019  Score=44.87  Aligned_cols=25  Identities=44%  Similarity=0.558  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ..++|.|=|..|+||||+++.|...
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC-
T ss_pred             CceEEEEECCcCCCHHHHHHHHHHH
Confidence            5688999999999999999998743

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.09  E-value=0.002  Score=40.71  Aligned_cols=24  Identities=33%  Similarity=0.621  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .-+++.|++|+||||+...|..+.
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            568999999999999999998664

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.08  E-value=0.002  Score=43.54  Aligned_cols=25  Identities=24%  Similarity=0.442  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcCC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      ..-|+|.|++|+|||||+..+.+..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhh
Confidence            3467899999999999999987653

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0016  Score=42.29  Aligned_cols=19  Identities=21%  Similarity=0.431  Sum_probs=16.0

Q ss_pred             EEEEcCCCCChhHHHHHHh
Q 031598           11 VIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~   29 (156)
                      |+|-|..||||||++..|.
T Consensus         6 I~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6777999999999877764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0023  Score=41.37  Aligned_cols=23  Identities=26%  Similarity=0.497  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHHhcCC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      =|+|.|..||||||+.+.|....
T Consensus         5 iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEECCCcCCHHHHHHHHHHCC
Confidence            47899999999999999886443

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.02  E-value=0.0017  Score=42.48  Aligned_cols=22  Identities=18%  Similarity=0.294  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -++|.|++|+|||+|+..|...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4689999999999999998754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.01  E-value=0.0027  Score=40.86  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +=|++.|..||||||+.+.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            45789999999999999888643

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.00  E-value=0.001  Score=45.39  Aligned_cols=20  Identities=20%  Similarity=0.509  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCChhHHHHHHh
Q 031598           10 KVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~   29 (156)
                      =|+|.|.+||||||+.++|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            38999999999999998764

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.98  E-value=0.002  Score=45.34  Aligned_cols=24  Identities=21%  Similarity=0.184  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhcC
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...+++.||||+|||+|+..+.+.
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCeEEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999988743

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.97  E-value=0.0013  Score=46.87  Aligned_cols=23  Identities=30%  Similarity=0.618  Sum_probs=18.9

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHh
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~   29 (156)
                      ..-+++++|++|+|||++++.|.
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCCCeEECCCCCCHHHHHHHHH
Confidence            34567999999999999986554

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.96  E-value=0.0019  Score=42.49  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -++|.|++|+|||+|...|...
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4689999999999999988754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0023  Score=42.00  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .-|+|=|..||||||+++.|..
T Consensus         3 k~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            3578999999999999998874

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.76  E-value=0.0032  Score=39.48  Aligned_cols=24  Identities=33%  Similarity=0.646  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .-|++.|++|+||||+.-.+..+.
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            568999999999999998888665

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.66  E-value=0.0025  Score=43.32  Aligned_cols=18  Identities=28%  Similarity=0.639  Sum_probs=16.3

Q ss_pred             EEEcCCCCChhHHHHHHh
Q 031598           12 IILGDSGVGKTSLMNQYV   29 (156)
Q Consensus        12 ~v~G~~~~GKstli~~l~   29 (156)
                      +++|+.||||||++.++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            789999999999998773

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.66  E-value=0.0031  Score=41.33  Aligned_cols=22  Identities=32%  Similarity=0.674  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -++|.|++|+|||+|+..+...
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4689999999999999988754

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.0034  Score=40.75  Aligned_cols=20  Identities=30%  Similarity=0.370  Sum_probs=17.8

Q ss_pred             EEEEcCCCCChhHHHHHHhc
Q 031598           11 VIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~   30 (156)
                      |+|-|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999988763

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.57  E-value=0.0038  Score=43.13  Aligned_cols=21  Identities=33%  Similarity=0.518  Sum_probs=17.8

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      +++.|+||+|||.+++.+.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            455799999999999998754

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.56  E-value=0.0034  Score=44.21  Aligned_cols=25  Identities=20%  Similarity=0.458  Sum_probs=21.6

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHhc
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .+.-+++++||+|||||-+.++|..
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHh
Confidence            3567799999999999999999864

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.004  Score=40.79  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -++|.|++|+|||+|...|...
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999753

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.00052  Score=43.55  Aligned_cols=18  Identities=33%  Similarity=0.708  Sum_probs=16.0

Q ss_pred             EEEcCCCCChhHHHHHHh
Q 031598           12 IILGDSGVGKTSLMNQYV   29 (156)
Q Consensus        12 ~v~G~~~~GKstli~~l~   29 (156)
                      +|+|+.||||||++.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999874

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.48  E-value=0.0038  Score=44.51  Aligned_cols=23  Identities=17%  Similarity=0.387  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -=|+|.|+.||||||.++.++..
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCccHHHHHHhhh
Confidence            34899999999999999999864

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.46  E-value=0.0039  Score=40.62  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      -++|.|++|+|||+|+..+...
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3589999999999999998743

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.0052  Score=39.62  Aligned_cols=21  Identities=19%  Similarity=0.384  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      .+++.|++|+||||++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999997764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.0053  Score=40.37  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChhHHHHHHhc
Q 031598           10 KVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~   30 (156)
                      .+++.|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            478999999999999988753

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.95  E-value=0.0061  Score=42.99  Aligned_cols=18  Identities=33%  Similarity=0.685  Sum_probs=16.3

Q ss_pred             EEEcCCCCChhHHHHHHh
Q 031598           12 IILGDSGVGKTSLMNQYV   29 (156)
Q Consensus        12 ~v~G~~~~GKstli~~l~   29 (156)
                      +|+|+.|+|||+++.++.
T Consensus        29 ~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            688999999999999874

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.94  E-value=0.007  Score=39.06  Aligned_cols=20  Identities=35%  Similarity=0.615  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCChhHHHHHHh
Q 031598           10 KVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~   29 (156)
                      -++|.|++|+|||+|+..+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            45888999999999987664

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.89  E-value=0.0097  Score=38.90  Aligned_cols=22  Identities=14%  Similarity=0.200  Sum_probs=18.9

Q ss_pred             EEEEEEcCCCCChhHHHHHHhc
Q 031598            9 LKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .-|++.|..||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3478999999999999998854

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.87  E-value=0.0081  Score=40.13  Aligned_cols=19  Identities=26%  Similarity=0.634  Sum_probs=16.7

Q ss_pred             EEEEcCCCCChhHHHHHHh
Q 031598           11 VIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~   29 (156)
                      ++|.|++|+|||+|+..+.
T Consensus        38 ~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5799999999999988775

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.82  E-value=0.0067  Score=39.00  Aligned_cols=25  Identities=12%  Similarity=0.215  Sum_probs=20.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      +.-.+++.|++++|||+|+..+..-
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHH
Confidence            3456899999999999999988744

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.82  E-value=0.011  Score=40.56  Aligned_cols=23  Identities=35%  Similarity=0.583  Sum_probs=19.2

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .-.++++|++|+|||.++..+..
T Consensus        53 ~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          53 IGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             SEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             ceEEEEECCCcchHHHHHHHHHH
Confidence            34678999999999999987763

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.77  E-value=0.0085  Score=38.80  Aligned_cols=21  Identities=38%  Similarity=0.631  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      +.+.|++|+|||-|++.+.+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998865

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.49  E-value=0.0075  Score=40.65  Aligned_cols=16  Identities=31%  Similarity=0.688  Sum_probs=13.4

Q ss_pred             EEEEEcCCCCChhHHH
Q 031598           10 KVIILGDSGVGKTSLM   25 (156)
Q Consensus        10 ~i~v~G~~~~GKstli   25 (156)
                      .++|+|.+|+||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            3689999999999754

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.48  E-value=0.0082  Score=40.83  Aligned_cols=15  Identities=33%  Similarity=0.787  Sum_probs=13.2

Q ss_pred             EEEEcCCCCChhHHH
Q 031598           11 VIILGDSGVGKTSLM   25 (156)
Q Consensus        11 i~v~G~~~~GKstli   25 (156)
                      ++|.|.+||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.011  Score=39.38  Aligned_cols=19  Identities=26%  Similarity=0.358  Sum_probs=16.5

Q ss_pred             EEEEcCCCCChhHHHHHHh
Q 031598           11 VIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~   29 (156)
                      .++.|++|+|||+|+..+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            4689999999999987764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.38  E-value=0.0094  Score=42.40  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=19.4

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ...++|+|.+|+|||+++..++.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            35689999999999999877663

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=94.35  E-value=0.015  Score=38.71  Aligned_cols=72  Identities=14%  Similarity=0.044  Sum_probs=42.2

Q ss_pred             EEEEEEeCCCcccccc-hhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEEecCCCCCC
Q 031598           57 FTLQIWDTAGQERFQS-LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF-VVLGNKIDVDGG  132 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~-~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~  132 (156)
                      +.+.++|+|+...... ........+|.++++.+. +..++.........+.......   +.++ -+|.|+.+....
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~---~~~~~~vv~N~~~~~~~  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSG---GVRLGGIICNSRKVANE  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTB---BCEEEEEEEECCSSSCC
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhcccc---ceeccceEEeeecCCCc
Confidence            4588999987543322 222233457888777765 4556666555555555443322   3333 478899887654

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.67  E-value=0.02  Score=38.40  Aligned_cols=24  Identities=17%  Similarity=0.329  Sum_probs=20.1

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      +.-.+.+.|++++|||+|++.+..
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHH
Confidence            345678899999999999988764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.59  E-value=0.021  Score=38.71  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      |++++|++|+|||+|+..+...
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999888753

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.28  E-value=0.026  Score=39.41  Aligned_cols=18  Identities=33%  Similarity=0.573  Sum_probs=15.2

Q ss_pred             EEEEEcCCCCChhHHHHH
Q 031598           10 KVIILGDSGVGKTSLMNQ   27 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~   27 (156)
                      -.+|.|++|+||||.+..
T Consensus       165 ~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEEEECCTTSTHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHH
Confidence            468899999999998754

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.18  E-value=0.043  Score=32.09  Aligned_cols=24  Identities=8%  Similarity=0.151  Sum_probs=21.0

Q ss_pred             ceeEEEEEEcCCCCChhHHHHHHh
Q 031598            6 RTLLKVIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus         6 ~~~~~i~v~G~~~~GKstli~~l~   29 (156)
                      +.-+.|.+-|.+++||+|+.+.|.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHH
Confidence            345889999999999999998885

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.54  E-value=0.044  Score=36.74  Aligned_cols=71  Identities=14%  Similarity=0.186  Sum_probs=38.9

Q ss_pred             EEEEEEeCCCcccccchhhhh-eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEEecCCCCC
Q 031598           57 FTLQIWDTAGQERFQSLGVAF-YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF-VVLGNKIDVDG  131 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~-~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~  131 (156)
                      +.+.++|+|+........... ...++.++++.. .+..+...+....+.+.......   +.++ .+|.|+.+...
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~---~~~~~gvv~n~~~~~~  191 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSG---SVRLGGLICNSRNTDR  191 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTS---CCEEEEEEEECCCCTT
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhhhcc---cccccceeehhhcchh
Confidence            457899998765333222222 234566665543 44555555555555554443322   4444 37889877544

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.33  E-value=0.046  Score=36.44  Aligned_cols=19  Identities=37%  Similarity=0.525  Sum_probs=15.3

Q ss_pred             EEEEEcCCCCChhHHHHHH
Q 031598           10 KVIILGDSGVGKTSLMNQY   28 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l   28 (156)
                      =|++.|.+|+||||+.-.+
T Consensus        10 ~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCcChHHHHHHHH
Confidence            4578999999999975544

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.05  E-value=0.064  Score=31.51  Aligned_cols=23  Identities=13%  Similarity=0.176  Sum_probs=17.8

Q ss_pred             eEEEEEEcCCCCChhHHHHHHhc
Q 031598            8 LLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         8 ~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      .-..++.++.|+|||+++-.+..
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHH
Confidence            34558899999999998876553

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.95  E-value=0.051  Score=36.21  Aligned_cols=20  Identities=40%  Similarity=0.481  Sum_probs=17.1

Q ss_pred             EEEEcCCCCChhHHHHHHhc
Q 031598           11 VIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~   30 (156)
                      +.+.|++++|||||+-.+..
T Consensus        57 tei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            47899999999999877763

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.87  E-value=0.055  Score=35.38  Aligned_cols=19  Identities=37%  Similarity=0.471  Sum_probs=17.1

Q ss_pred             EEEEcCCCCChhHHHHHHh
Q 031598           11 VIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~   29 (156)
                      +++.|+..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6899999999999999864

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.65  E-value=0.06  Score=34.98  Aligned_cols=19  Identities=32%  Similarity=0.546  Sum_probs=17.1

Q ss_pred             EEEEcCCCCChhHHHHHHh
Q 031598           11 VIILGDSGVGKTSLMNQYV   29 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~   29 (156)
                      +++.|+..+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999999764

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.64  E-value=0.057  Score=35.77  Aligned_cols=20  Identities=30%  Similarity=0.652  Sum_probs=14.7

Q ss_pred             EEE-EEEcCCCCChhHHHHHH
Q 031598            9 LKV-IILGDSGVGKTSLMNQY   28 (156)
Q Consensus         9 ~~i-~v~G~~~~GKstli~~l   28 (156)
                      .+| ++.|.+|+||||+.-.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            344 55699999999975444

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=91.61  E-value=0.061  Score=34.02  Aligned_cols=21  Identities=24%  Similarity=0.327  Sum_probs=16.9

Q ss_pred             EEEEEEcCC-CCChhHHHHHHh
Q 031598            9 LKVIILGDS-GVGKTSLMNQYV   29 (156)
Q Consensus         9 ~~i~v~G~~-~~GKstli~~l~   29 (156)
                      -|+.|.|.. |+||||+.-.|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            378999996 999999866553

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.42  E-value=0.061  Score=36.09  Aligned_cols=22  Identities=41%  Similarity=0.749  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      |+.++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            6899999999999998888644

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.31  E-value=0.063  Score=35.34  Aligned_cols=23  Identities=35%  Similarity=0.476  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      .-|++.|.+|+||+.+.+.+...
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHHh
Confidence            45799999999999999888643

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=91.29  E-value=0.2  Score=31.13  Aligned_cols=27  Identities=11%  Similarity=0.305  Sum_probs=18.8

Q ss_pred             cceeEEEEEEcC-CCCChhHHHHHHhcCC
Q 031598            5 RRTLLKVIILGD-SGVGKTSLMNQYVNKK   32 (156)
Q Consensus         5 ~~~~~~i~v~G~-~~~GKstli~~l~~~~   32 (156)
                      .++.+||.|+|. ++.|-+ ++..+....
T Consensus        21 ~k~~~kV~I~GA~G~Ig~~-l~~~La~g~   48 (175)
T d7mdha1          21 WKKLVNIAVSGAAGMISNH-LLFKLASGE   48 (175)
T ss_dssp             CCCCEEEEEETTTSHHHHH-HHHHHHHTT
T ss_pred             cCCCcEEEEECCCcHHHHH-HHHHHHcCc
Confidence            346789999997 556644 566776654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.24  E-value=0.83  Score=27.14  Aligned_cols=23  Identities=35%  Similarity=0.550  Sum_probs=17.8

Q ss_pred             EEEEEcC-CCCChhHHHHHHhcCCC
Q 031598           10 KVIILGD-SGVGKTSLMNQYVNKKF   33 (156)
Q Consensus        10 ~i~v~G~-~~~GKstli~~l~~~~~   33 (156)
                      ||.|+|. ..+| +++...+..+..
T Consensus         2 Kv~IiGA~G~VG-~~~A~~l~~~~~   25 (144)
T d1mlda1           2 KVAVLGASGGIG-QPLSLLLKNSPL   25 (144)
T ss_dssp             EEEEETTTSTTH-HHHHHHHHTCTT
T ss_pred             eEEEECCCChHH-HHHHHHHHhCCc
Confidence            7999995 8899 566777776654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.95  E-value=0.075  Score=32.29  Aligned_cols=26  Identities=15%  Similarity=0.360  Sum_probs=18.9

Q ss_pred             eeEEEEEEcC-CCCChhHHHHHHhcCCC
Q 031598            7 TLLKVIILGD-SGVGKTSLMNQYVNKKF   33 (156)
Q Consensus         7 ~~~~i~v~G~-~~~GKstli~~l~~~~~   33 (156)
                      +++||.|+|. +++|.+ ++..+...+.
T Consensus         3 ~p~KV~IiGA~G~VG~~-~a~~l~~~~l   29 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYS-LLFRIAAGEM   29 (154)
T ss_dssp             CCEEEEESSTTSHHHHH-HHHHHHTTTT
T ss_pred             CCCEEEEECCCCHHHHH-HHHHHHhccc
Confidence            5689999997 678854 5666766554

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=90.52  E-value=0.055  Score=36.93  Aligned_cols=14  Identities=50%  Similarity=0.807  Sum_probs=12.8

Q ss_pred             EEEcCCCCChhHHH
Q 031598           12 IILGDSGVGKTSLM   25 (156)
Q Consensus        12 ~v~G~~~~GKstli   25 (156)
                      ++.|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            79999999999965

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=90.07  E-value=0.06  Score=36.86  Aligned_cols=15  Identities=47%  Similarity=0.756  Sum_probs=13.2

Q ss_pred             EEEEcCCCCChhHHH
Q 031598           11 VIILGDSGVGKTSLM   25 (156)
Q Consensus        11 i~v~G~~~~GKstli   25 (156)
                      -++.|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            389999999999964

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.74  E-value=0.9  Score=28.61  Aligned_cols=66  Identities=8%  Similarity=0.075  Sum_probs=43.3

Q ss_pred             EEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEEecCCCCCC
Q 031598           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV-VLGNKIDVDGG  132 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~  132 (156)
                      +.+.++|+++...  ......+..+|.++++...+ ..+..........+.+    .   +.|++ +|.||.|....
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~----~---~~~~~giv~N~~~~~~~  178 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK----A---GLAILGFVLNRYGRSDR  178 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH----T---TCEEEEEEEEEETSCTT
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhh----h---hhhhhhhhhcccccccc
Confidence            5689999998653  33444567799999988765 4455555444444432    1   56765 89999987654

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.72  E-value=0.072  Score=36.51  Aligned_cols=14  Identities=50%  Similarity=0.807  Sum_probs=13.0

Q ss_pred             EEEcCCCCChhHHH
Q 031598           12 IILGDSGVGKTSLM   25 (156)
Q Consensus        12 ~v~G~~~~GKstli   25 (156)
                      ++.|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999976

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.27  E-value=0.11  Score=32.93  Aligned_cols=24  Identities=8%  Similarity=0.048  Sum_probs=21.0

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhc
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~   30 (156)
                      ....+++.|++|+|||+++..+.+
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999988764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.29  E-value=0.19  Score=30.40  Aligned_cols=25  Identities=12%  Similarity=0.243  Sum_probs=18.3

Q ss_pred             eeEEEEEEcC-CCCChhHHHHHHhcCC
Q 031598            7 TLLKVIILGD-SGVGKTSLMNQYVNKK   32 (156)
Q Consensus         7 ~~~~i~v~G~-~~~GKstli~~l~~~~   32 (156)
                      +++||.|+|+ +++|.+. +..+.+..
T Consensus         2 ~p~KV~IiGA~G~VG~~l-a~~l~~~~   27 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSL-LYSIGNGS   27 (154)
T ss_dssp             CCEEEEESSTTSHHHHTT-HHHHHTTT
T ss_pred             CceEEEEECCCCHHHHHH-HHHHHHHH
Confidence            5689999996 7788876 44566544

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=88.01  E-value=0.15  Score=33.91  Aligned_cols=20  Identities=35%  Similarity=0.348  Sum_probs=17.1

Q ss_pred             EEEEcCCCCChhHHHHHHhc
Q 031598           11 VIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~   30 (156)
                      +.+.|++++|||+|+..+..
T Consensus        60 tei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHH
Confidence            47899999999999887764

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.88  E-value=0.12  Score=32.30  Aligned_cols=21  Identities=14%  Similarity=0.425  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChhHHHHHHhcC
Q 031598           11 VIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~~   31 (156)
                      ++|+|...||||.+...+...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            589999999999999998744

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.63  E-value=0.18  Score=33.58  Aligned_cols=20  Identities=30%  Similarity=0.400  Sum_probs=16.7

Q ss_pred             EEEEcCCCCChhHHHHHHhc
Q 031598           11 VIILGDSGVGKTSLMNQYVN   30 (156)
Q Consensus        11 i~v~G~~~~GKstli~~l~~   30 (156)
                      +.+.|++++|||+|+..+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            47899999999999876653

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.39  E-value=0.12  Score=34.78  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      |+.++|.+|+|||+++..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            6789999999999998777643

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.44  E-value=0.36  Score=30.57  Aligned_cols=65  Identities=15%  Similarity=0.043  Sum_probs=39.1

Q ss_pred             EEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCC
Q 031598           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDG  131 (156)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~  131 (156)
                      +.+.++|+|+...  ......+..+|.++++.... ..+..........+...       +.+ +-+|.||.+...
T Consensus       110 ~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~iv~N~~~~~~  175 (232)
T d1hyqa_         110 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL-------GTKVLGVVVNRITTLG  175 (232)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH-------TCEEEEEEEEEECTTT
T ss_pred             cceeeeccccccc--chhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhc-------cccccccccccccccc
Confidence            4478999998653  33444566799999988764 34444443333333222       234 458899987543

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=85.31  E-value=0.19  Score=33.61  Aligned_cols=22  Identities=27%  Similarity=0.537  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChhHHHHHHhcC
Q 031598           10 KVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus        10 ~i~v~G~~~~GKstli~~l~~~   31 (156)
                      |+.++|.+|+|||+|+..+...
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHT
T ss_pred             eEeeccCCCCChHHHHHHHHhh
Confidence            5789999999999998776544

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.70  E-value=0.3  Score=30.30  Aligned_cols=15  Identities=33%  Similarity=0.605  Sum_probs=12.9

Q ss_pred             EEEEEcCCCCChhHH
Q 031598           10 KVIILGDSGVGKTSL   24 (156)
Q Consensus        10 ~i~v~G~~~~GKstl   24 (156)
                      ++++.++.|+|||..
T Consensus        25 n~lv~~pTGsGKT~i   39 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLI   39 (200)
T ss_dssp             CEEEECCTTSCHHHH
T ss_pred             CeEEEeCCCCcHHHH
Confidence            578999999999974

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.75  E-value=0.38  Score=30.51  Aligned_cols=19  Identities=32%  Similarity=0.625  Sum_probs=15.0

Q ss_pred             EEEE-cCCCCChhHHHHHHh
Q 031598           11 VIIL-GDSGVGKTSLMNQYV   29 (156)
Q Consensus        11 i~v~-G~~~~GKstli~~l~   29 (156)
                      |+|. +.+|+||||+.-.|.
T Consensus         5 Iav~~~kGGvGKTtia~nLA   24 (237)
T d1g3qa_           5 ISIVSGKGGTGKTTVTANLS   24 (237)
T ss_dssp             EEEECSSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCcHHHHHHHHH
Confidence            5677 688999999977663

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=83.65  E-value=0.37  Score=28.57  Aligned_cols=17  Identities=35%  Similarity=0.487  Sum_probs=13.6

Q ss_pred             EEEcCCCCChhH-HHHHH
Q 031598           12 IILGDSGVGKTS-LMNQY   28 (156)
Q Consensus        12 ~v~G~~~~GKst-li~~l   28 (156)
                      +++|+=.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            578999999999 55554

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=83.30  E-value=0.22  Score=28.71  Aligned_cols=16  Identities=25%  Similarity=0.355  Sum_probs=12.9

Q ss_pred             EEEEEEcCCCCChhHH
Q 031598            9 LKVIILGDSGVGKTSL   24 (156)
Q Consensus         9 ~~i~v~G~~~~GKstl   24 (156)
                      -++++.+++|+|||..
T Consensus         8 ~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             CEEEECCCTTSSTTTT
T ss_pred             CcEEEEcCCCCChhHH
Confidence            4668888999999943

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.29  E-value=1.9  Score=25.48  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=16.7

Q ss_pred             eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (156)
Q Consensus         7 ~~~~i~v~G~~~~GKstli~~l~~~   31 (156)
                      ...||.|+|..++|.+. ...+...
T Consensus         5 ~~~KI~IiGaG~vG~~~-a~~l~~~   28 (148)
T d1ldna1           5 GGARVVVIGAGFVGASY-VFALMNQ   28 (148)
T ss_dssp             TSCEEEEECCSHHHHHH-HHHHHHH
T ss_pred             CCCeEEEECcCHHHHHH-HHHHHhc
Confidence            34689999988888665 4455443

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=82.88  E-value=2.3  Score=24.83  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=17.2

Q ss_pred             EEEEEEcCCCCChhHHHHHHhcCC
Q 031598            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         9 ~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      +||.|+|..++|.+ +...+....
T Consensus         1 mKI~IIGaG~VG~~-la~~l~~~~   23 (142)
T d1guza1           1 MKITVIGAGNVGAT-TAFRLAEKQ   23 (142)
T ss_dssp             CEEEEECCSHHHHH-HHHHHHHTT
T ss_pred             CEEEEECcCHHHHH-HHHHHHhCC
Confidence            58999999888887 466666553

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=81.08  E-value=0.77  Score=25.23  Aligned_cols=29  Identities=17%  Similarity=0.385  Sum_probs=24.1

Q ss_pred             ccceeEEEEEEcCCCCChhHHHHHHhcCC
Q 031598            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK   32 (156)
Q Consensus         4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~   32 (156)
                      .-...-+|.|+|-.|+|-|.|...|..+.
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G   32 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNEG   32 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHHT
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhCC
Confidence            33456789999999999999998888665