Citrus Sinensis ID: 031606

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICAGGTSLIIQLFCLLSVRVYCKWNASGMLFQ
Secondary Structure (PSIPRED)
ccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccccEEccccEEEEEcccccccEEcccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHEEEEEEEcccccccc
Coil and Loop (DISEMBL)
mgsrgllllkgaapkhhifnntkgsifsskmptryyyydydynnrtrncsttttrssleppdvprlaqtarisltpheveefaPKIRQVIDWFgqlqdvdldsvdpalragskrekntlcyypricaggTSLIIQLFCLLSVRVYCKWNASGMLFQ
Flexible Loop (DISEMBL)
MGSRGLLLLkgaapkhhifnntkgsifsskmptRYYYYDYDYNNRTRNCSTtttrssleppdvpRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPAlragskrekntlcyYPRICAGGTSLIIQLFCLLSVRVYCKWNASGMLFQ
Low Complexity Region (SEG)
MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPtryyyydydynnrtrncsttttrssLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICAGGTSLIIQLFCLLSVRVYCKWNASGMLFQ
Disordered region (IsUnstruct)
*****LLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRN***********************ISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAG**REKNTLCYYPRICAGGTSLIIQLFCLLSVRVYCKWNASGM***
Disordered Region (DISOPRED)
****GLL*LKGAAPKHHIFN*****************************************DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICAGGTSLIIQLFCLLSVRVYCKWNASGMLFQ
Disordered Region (DISEMBL)
MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCS***********DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICAGGTSLIIQLFCLLSVRVYCKWNASGMLFQ
Disordered Region (DISPRO)
***RGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRY*YY*******************LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICAGGTSLIIQLFCLLSVRVYCKWNASG**F*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICAGGTSLIIQLFCLLSVRVYCKWNASGMLFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
D7STK2	137	Glutamyl-tRNA(Gln) amidot	yes	no	0.628	0.715	0.575	3e-27
B9RRX2	143	Glutamyl-tRNA(Gln) amidot	N/A	no	0.410	0.447	0.75	5e-21
B9INH0	141	Glutamyl-tRNA(Gln) amidot	yes	no	0.628	0.695	0.504	7e-21
Q7XZZ1	153	Glutamyl-tRNA(Gln) amidot	yes	no	0.352	0.359	0.781	4e-20
A2XK57	153	Glutamyl-tRNA(Gln) amidot	N/A	no	0.352	0.359	0.781	4e-20
F4JV80	155	Glutamyl-tRNA(Gln) amidot	yes	no	0.705	0.709	0.486	6e-19
C5WR30	146	Glutamyl-tRNA(Gln) amidot	N/A	no	0.532	0.568	0.493	7e-18
A9P2J1	181	Glutamyl-tRNA(Gln) amidot	N/A	no	0.474	0.408	0.513	1e-15
Q5FND2	95	Aspartyl/glutamyl-tRNA(As	yes	no	0.352	0.578	0.418	4e-06
B7K034	98	Aspartyl/glutamyl-tRNA(As	yes	no	0.307	0.489	0.395	8e-05

>sp|D7STK2|GATC_VITVI Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vitis vinifera GN=GATC PE=3 SV=1

 Score =  120 bits (302), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/113 (57%), Positives = 78/113 (69%), Gaps = 15/113 (13%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEP 60
           MGSR LLLLK    +  +F  T  S FS  +            N TR+ ST   RS+L P
Sbjct: 1   MGSRALLLLKATTAETLLF--TSKSTFSKAL----------IRNSTRSFST---RSALLP 45

Query: 61  PDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSK 113
           PD+PRLA+TARISLTPHEVEEFAPKIRQVIDWFGQLQ VDL S++P++RA ++
Sbjct: 46  PDLPRLAETARISLTPHEVEEFAPKIRQVIDWFGQLQAVDLQSIEPSIRADTE 98

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
Vitis vinifera (taxid: 29760)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: -

>sp|B9RRX2|GATC_RICCO Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ricinus communis GN=GATC PE=3 SV=1

 Score =  100 bits (248), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 55/64 (85%)

Query: 52  TTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAG 111
            T  SSL+PPDV RLA+TARISL  +EVEEFAPKIRQVIDWFGQLQ VDL+SV+PA+RA 
Sbjct: 43  ATNGSSLQPPDVSRLAETARISLNQNEVEEFAPKIRQVIDWFGQLQAVDLNSVEPAIRAD 102

Query: 112 SKRE 115
           S+ E
Sbjct: 103 SEGE 106

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Ricinus communis (taxid: 3988)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|B9INH0|GATC_POPTR Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Populus trichocarpa GN=GATC PE=3 SV=1

 Score = 99.4 bits (246), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 70/117 (59%), Gaps = 19/117 (16%)

Query: 1   MGSRGLLLLKGAAPKHH----IFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRS 56
           MGSR +LLLKG +P  H    + N+ K S   S               R      T   S
Sbjct: 1   MGSRAVLLLKGPSPPKHSILFLLNHKKISPAPSI--------------RRFTTKATANGS 46

Query: 57  SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSK 113
           SLEPPDV RLA+TARISLTP +VEEF PKIRQVIDW   L  VDLDSV+P++RA ++
Sbjct: 47  SLEPPDVARLAETARISLTPQQVEEFGPKIRQVIDWHALLS-VDLDSVEPSIRADTE 102

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Populus trichocarpa (taxid: 3694)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q7XZZ1|GATC_ORYSJ Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=GATC PE=2 SV=1

 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 50/55 (90%)

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGS 112
           LEPPD+PRLA  ARISL+P E EEFAPKIRQV+DWFGQLQ VDL+SV+P+LRAG+
Sbjct: 58  LEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAGT 112

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|A2XK57|GATC_ORYSI Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica GN=GATC PE=3 SV=1

 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 50/55 (90%)

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGS 112
           LEPPD+PRLA  ARISL+P E EEFAPKIRQV+DWFGQLQ VDL+SV+P+LRAG+
Sbjct: 58  LEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAGT 112

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Oryza sativa subsp. indica (taxid: 39946)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|F4JV80|GATC_ARATH Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GATC PE=2 SV=1

 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 74/113 (65%), Gaps = 3/113 (2%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYD--YNNR-TRNCSTTTTRSS 57
           M +R LL +  A+P     + ++  I S    +  +YY      N+R  R+ S+ +  S 
Sbjct: 1   MATRALLAVIYASPNRCYISPSRIKIQSLTCSSSSHYYQRQSRKNHRIARSYSSDSDSSV 60

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
           L+PPDV RLAQTARISLTP E+EE   KIR+VIDWFGQLQ VD++SV+PA+RA
Sbjct: 61  LQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDVNSVEPAIRA 113

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|C5WR30|GATC_SORBI Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Sorghum bicolor GN=GATC PE=3 SV=1

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 55/83 (66%)

Query: 30  KMPTRYYYYDYDYNNRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQV 89
           + P    Y+    ++ +           LEPPD+ RLA  ARISL+P E E+F PKIRQV
Sbjct: 23  RRPAARTYWPRPLSSSSHVTPAAAGAGELEPPDLTRLANAARISLSPQEAEDFEPKIRQV 82

Query: 90  IDWFGQLQDVDLDSVDPALRAGS 112
           +DWFGQLQ VDL+S++P+LRAG+
Sbjct: 83  VDWFGQLQAVDLESIEPSLRAGT 105

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Sorghum bicolor (taxid: 4558)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|A9P2J1|GATC_PICSI Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Picea sitchensis GN=GATC PE=2 SV=1

 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 54/74 (72%)

Query: 44  NRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDS 103
           +R++     +  ++ E PDV +LA  ARISLTP EVE++ PKI QVIDWFGQLQ V+L++
Sbjct: 70  SRSQPWRFYSVHNNFEAPDVVQLAAKARISLTPKEVEDYGPKIGQVIDWFGQLQGVNLEN 129

Query: 104 VDPALRAGSKREKN 117
           V+PA+RA + +  N
Sbjct: 130 VEPAIRADTDKLSN 143

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Picea sitchensis (taxid: 3332)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q5FND2|GATC_GLUOX Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Gluconobacter oxydans (strain 621H) GN=gatC PE=3 SV=1

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%)

Query: 57  SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAG 111
           SL+   V R+A+ ARI L P E+E     +  +IDW  QL++VD+  VDP +  G
Sbjct: 2   SLDAKTVTRIARLARIGLQPEEIETLGKDMGSIIDWVEQLKEVDVTGVDPMIGTG 56

Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|B7K034|GATC_CYAP8 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Cyanothece sp. (strain PCC 8801) GN=gatC PE=3 SV=1

 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 32/48 (66%)

Query: 63  VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
           V ++A  AR+ +TP E E FAP++  ++ +F QL ++D ++V P  RA
Sbjct: 7   VEKIAHLARLEITPAEEEAFAPQLNSILQYFDQLSELDTENVPPMTRA 54

Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
225429410	137	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.628	0.715	0.575	2e-25
449502831	145	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.679	0.731	0.546	8e-23
449436902	145	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.679	0.731	0.546	1e-22
388491928	139	unknown [Lotus japonicus]	0.628	0.705	0.5	2e-19
255550886	143	Glutamyl-tRNA(Gln) amidotransferase subu	0.410	0.447	0.75	3e-19
224142842	141	predicted protein [Populus trichocarpa]	0.628	0.695	0.504	4e-19
356535682	143	PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gl	0.429	0.468	0.701	5e-19
357119986	143	PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gl	0.628	0.685	0.459	1e-18
356576181	143	PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gl	0.429	0.468	0.656	2e-18
115454377	153	Os03g0651000 [Oryza sativa Japonica Grou	0.352	0.359	0.781	2e-18

>gi|225429410|ref|XP_002275650.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Vitis vinifera] gi|353558764|sp|D7STK2.1|GATC_VITVI RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Short=Glu-AdT subunit C; Flags: Precursor gi|296081596|emb|CBI20601.3| unnamed protein product [Vitis vinifera]

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/113 (57%), Positives = 78/113 (69%), Gaps = 15/113 (13%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEP 60
           MGSR LLLLK    +  +F  T  S FS  +            N TR+ ST   RS+L P
Sbjct: 1   MGSRALLLLKATTAETLLF--TSKSTFSKAL----------IRNSTRSFST---RSALLP 45

Query: 61  PDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSK 113
           PD+PRLA+TARISLTPHEVEEFAPKIRQVIDWFGQLQ VDL S++P++RA ++
Sbjct: 46  PDLPRLAETARISLTPHEVEEFAPKIRQVIDWFGQLQAVDLQSIEPSIRADTE 98

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502831|ref|XP_004161755.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucumis sativus]

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 80/119 (67%), Gaps = 13/119 (10%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTT-TRSSLE 59
           MGS+ L LLKGA+     F + K  IF S   T ++      N   RN ST +   +SL+
Sbjct: 1   MGSKALPLLKGASS----FPSLKRQIFIS---TAFHSLPVS-NISIRNSSTASGISASLQ 52

Query: 60  PPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA----GSKR 114
           PPDVPRLAQTARISLTP + EEFAPKI QV+DWFGQLQ VDL S++P++RA    GS+R
Sbjct: 53  PPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGSQR 111

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436902|ref|XP_004136231.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucumis sativus]

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 80/119 (67%), Gaps = 13/119 (10%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTT-TRSSLE 59
           MGS+ L LLKGA+     F + K  IF S   T ++      N   RN ST +   +SL+
Sbjct: 1   MGSKALPLLKGASS----FPSLKRQIFIS---TAFHSLPVS-NISIRNSSTASGISASLQ 52

Query: 60  PPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA----GSKR 114
           PPDVPRLAQTARISLTP + EEFAPKI QV+DWFGQLQ VDL S++P++RA    GS+R
Sbjct: 53  PPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGSQR 111

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491928|gb|AFK34030.1| unknown [Lotus japonicus]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 74/116 (63%), Gaps = 18/116 (15%)

Query: 1   MGS-RGLLLL--KGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSS 57
           MGS +GL+LL  KGA+   H F         SK                R+ S+TT  SS
Sbjct: 1   MGSSKGLILLSSKGASSLSHSFAKVSSVGLHSKF---------------RSFSSTTICSS 45

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSK 113
            +PPD+  LA+ A+ISLTPH+V+EFAPKI+QVI+WFGQLQ VDL SV+P+LRA S+
Sbjct: 46  TQPPDLTSLAKKAQISLTPHQVDEFAPKIQQVIEWFGQLQSVDLQSVEPSLRAESE 101

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550886|ref|XP_002516491.1| Glutamyl-tRNA(Gln) amidotransferase subunit C, putative [Ricinus communis] gi|353558760|sp|B9RRX2.1|GATC_RICCO RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Short=Glu-AdT subunit C; Flags: Precursor gi|223544311|gb|EEF45832.1| Glutamyl-tRNA(Gln) amidotransferase subunit C, putative [Ricinus communis]

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 55/64 (85%)

Query: 52  TTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAG 111
            T  SSL+PPDV RLA+TARISL  +EVEEFAPKIRQVIDWFGQLQ VDL+SV+PA+RA 
Sbjct: 43  ATNGSSLQPPDVSRLAETARISLNQNEVEEFAPKIRQVIDWFGQLQAVDLNSVEPAIRAD 102

Query: 112 SKRE 115
           S+ E
Sbjct: 103 SEGE 106

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142842|ref|XP_002324749.1| predicted protein [Populus trichocarpa] gi|353558759|sp|B9INH0.1|GATC_POPTR RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Short=Glu-AdT subunit C; Flags: Precursor gi|222866183|gb|EEF03314.1| predicted protein [Populus trichocarpa]

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 70/117 (59%), Gaps = 19/117 (16%)

Query: 1   MGSRGLLLLKGAAPKHH----IFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRS 56
           MGSR +LLLKG +P  H    + N+ K S   S               R      T   S
Sbjct: 1   MGSRAVLLLKGPSPPKHSILFLLNHKKISPAPSI--------------RRFTTKATANGS 46

Query: 57  SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSK 113
           SLEPPDV RLA+TARISLTP +VEEF PKIRQVIDW   L  VDLDSV+P++RA ++
Sbjct: 47  SLEPPDVARLAETARISLTPQQVEEFGPKIRQVIDWHALLS-VDLDSVEPSIRADTE 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535682|ref|XP_003536373.1| PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C-like [Glycine max]

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/67 (70%), Positives = 60/67 (89%)

Query: 47  RNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
           R+ S TTT SSL PPD+PRLA+TA+ISLTP+EVEE APKI+QVI+WFGQLQ VDL+SV+P
Sbjct: 39  RSFSLTTTCSSLLPPDLPRLAKTAQISLTPNEVEEIAPKIQQVIEWFGQLQGVDLESVEP 98

Query: 107 ALRAGSK 113
           ++RA ++
Sbjct: 99  SIRAETE 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357119986|ref|XP_003561713.1| PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C-like [Brachypodium distachyon]

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 68/111 (61%), Gaps = 13/111 (11%)

Query: 2   GSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEPP 61
            + G+  L+ AAP  H    T+  + SS  PTR                       LEPP
Sbjct: 5   AASGIPRLRWAAPPRHTLARTQWLLLSSS-PTRTPAP------------AAAGPGGLEPP 51

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGS 112
           D+PRLA++ARISL+P E EEF+PKI+QV+DWFGQLQ VDL+ ++P+LRAG+
Sbjct: 52  DLPRLAKSARISLSPEEAEEFSPKIQQVVDWFGQLQAVDLECIEPSLRAGT 102

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576181|ref|XP_003556212.1| PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C-like [Glycine max]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 60/67 (89%)

Query: 47  RNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
           ++ S+TT  SSL PPD+PRLA+TA+ISLTP+EVEE APKI+QVI+WFGQLQ +DL+SV+P
Sbjct: 39  QSFSSTTACSSLPPPDLPRLAKTAQISLTPNEVEEIAPKIQQVIEWFGQLQGIDLESVEP 98

Query: 107 ALRAGSK 113
           ++RA ++
Sbjct: 99  SIRAETE 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115454377|ref|NP_001050789.1| Os03g0651000 [Oryza sativa Japonica Group] gi|75271878|sp|Q7XZZ1.1|GATC_ORYSJ RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Short=Glu-AdT subunit C; Flags: Precursor gi|353558757|sp|A2XK57.1|GATC_ORYSI RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Short=Glu-AdT subunit C; Flags: Precursor gi|31712092|gb|AAP68396.1| unknown protein [Oryza sativa Japonica Group] gi|62733418|gb|AAX95535.1| Putative Glutamyl-tRNA(Gln) amidotransferase, C subunit [Oryza sativa Japonica Group] gi|108710125|gb|ABF97920.1| glutamyl-tRNA amidotransferase, C subunit family protein, expressed [Oryza sativa Japonica Group] gi|113549260|dbj|BAF12703.1| Os03g0651000 [Oryza sativa Japonica Group] gi|125545078|gb|EAY91217.1| hypothetical protein OsI_12826 [Oryza sativa Indica Group] gi|125587301|gb|EAZ27965.1| hypothetical protein OsJ_11926 [Oryza sativa Japonica Group] gi|215767743|dbj|BAG99971.1| unnamed protein product [Oryza sativa Japonica Group]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 50/55 (90%)

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGS 112
           LEPPD+PRLA  ARISL+P E EEFAPKIRQV+DWFGQLQ VDL+SV+P+LRAG+
Sbjct: 58  LEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAGT 112

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
TAIR|locus:505006545	155	AT4G32915 "AT4G32915" [Arabido	0.339	0.341	0.754	8.6e-17
TIGR_CMR|APH_1113	106	APH_1113 "glutamyl-tRNA(Gln) a	0.320	0.471	0.32	3e-05

TAIR|locus:505006545 AT4G32915 "AT4G32915" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 40/53 (75%), Positives = 47/53 (88%)

Query:    58 LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
             L+PPDV RLAQTARISLTP E+EE   KIR+VIDWFGQLQ VD++SV+PA+RA
Sbjct:    61 LQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDVNSVEPAIRA 113

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006450 "regulation of translational fidelity" evidence=IEA

TIGR_CMR|APH_1113 APH_1113 "glutamyl-tRNA(Gln) amidotransferase, C subunit" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query:    62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAG 111
             ++ R+++  R+ +   EV+ +  ++  V+ WFG L +VD   VDP L  G
Sbjct:    17 ELARVSKLVRLQIPEEEVDTYCRQLGDVVSWFGMLAEVDTTDVDPVLHGG 66


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.139   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      156       131   0.00091  102 3  11 22  0.37    31
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  139 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.17u 0.22s 11.39t   Elapsed:  00:00:00
  Total cpu time:  11.17u 0.22s 11.39t   Elapsed:  00:00:00
  Start:  Thu May  9 15:17:34 2013   End:  Thu May  9 15:17:34 2013

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
D7STK2	GATC_VITVI	6, ., 3, ., 5, ., -	0.5752	0.6282	0.7153	yes	no
B9INH0	GATC_POPTR	6, ., 3, ., 5, ., -	0.5042	0.6282	0.6950	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.5	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032138001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (137 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00020369001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (555 aa)	•				•		•		0.940
	GSVIVG00018820001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (546 aa)	•			•	•		•		0.903

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	156
COG0721	96	COG0721, GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransf	9e-09
PRK00034	95	PRK00034, gatC, aspartyl/glutamyl-tRNA amidotransf	4e-08
TIGR00135	93	TIGR00135, gatC, aspartyl/glutamyl-tRNA(Asn/Gln) a	8e-08
pfam02686	72	pfam02686, Glu-tRNAGln, Glu-tRNAGln amidotransfera	3e-06

>gnl|CDD|223793 COG0721, GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]

 Score = 49.5 bits (119), Expect = 9e-09
 Identities = 16/45 (35%), Positives = 30/45 (66%)

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
           +V  LA+ AR+ L+  E+E+FA ++  ++ +  QL +VD + V+P
Sbjct: 7   EVKHLAKLARLELSEEELEKFATQLEDILGYVEQLNEVDTEGVEP 51

Length = 96

>gnl|CDD|178810 PRK00034, gatC, aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 17/51 (33%), Positives = 34/51 (66%)

Query: 56  SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
            ++   +V  LA+ AR+ L+  E+E+FA ++ +++D+  QL +VD + V+P
Sbjct: 1   MAITREEVKHLAKLARLELSEEELEKFAGQLNKILDFVEQLNEVDTEGVEP 51

Length = 95

>gnl|CDD|129241 TIGR00135, gatC, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit

 Score = 47.3 bits (113), Expect = 8e-08
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
           +V  LA+ AR+ L+  E E FA  + +++D+  QL +VD ++V+P
Sbjct: 5   EVKHLAKLARLELSEEEAESFAGDLDEILDYVEQLNEVDTENVEP 49

Archaea, organelles, and many bacteria charge Gln-tRNA by first misacylating it with Glu and then amidating Glu to Gln. This small protein is part of the amidotransferase heterotrimer and appears to be important to the stability of the amidase subunit encode by gatA, but its function may not be required in every organism that expresses gatA and gatB. The seed alignment for This model does not include any eukaryotic sequence and is not guaranteed to find eukaryotic examples, although it does find some. Saccharomyces cerevisiae, which expresses the amidotransferase for mitochondrial protein translation, seems to lack a gatC ortholog. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model [Protein synthesis, tRNA aminoacylation]. Length = 93

>gnl|CDD|217186 pfam02686, Glu-tRNAGln, Glu-tRNAGln amidotransferase C subunit

 Score = 42.5 bits (101), Expect = 3e-06
 Identities = 11/33 (33%), Positives = 23/33 (69%)

Query: 74  LTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
           L+  E+E+F  ++ +++D+  QL +VD + V+P
Sbjct: 1   LSEEELEKFTKQLNKILDYVEQLNEVDTEGVEP 33

This is a family of Glu-tRNAGln amidotransferase C subunits. The Glu-tRNA Gln amidotransferase enzyme itself is an important translational fidelity mechanism replacing incorrectly charged Glu-tRNAGln with the correct Gln-tRANGln via transmidation of the misacylated Glu-tRNAGln. This activity supplements the lack of glutaminyl-tRNA synthetase activity in gram-positive eubacterteria, cyanobacteria, Archaea, and organelles. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
COG0721	96	GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C su	99.86
PRK00034	95	gatC aspartyl/glutamyl-tRNA amidotransferase subun	99.85
TIGR00135	93	gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)	99.85
PRK12821	477	aspartyl/glutamyl-tRNA amidotransferase subunit C-	99.81
PRK12820	706	bifunctional aspartyl-tRNA synthetase/aspartyl/glu	99.59
PF02686	72	Glu-tRNAGln: Glu-tRNAGln amidotransferase C subuni	99.56
TIGR01827	73	gatC_rel Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransfer	98.3
KOG4247	175	consensus Mitochondrial DNA polymerase accessory s	96.67

>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=1.2e-21  Score=144.44  Aligned_cols=81  Identities=21%  Similarity=0.306  Sum_probs=76.8

Q ss_pred             CCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCCCCCCCcccCCCChHHHHHh
Q 031606           56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICAGGTSLIIQ  135 (156)
Q Consensus        56 m~I~kEeVkkIA~LARL~LsEEEle~~~~qLn~ILe~~d~L~eVDTegVEPm~r~dev~~s~~ReDep~~~~~~~~LL~~  135 (156)
                      |+||+++|+|||+||||+++++|++.|..+|++|++||++|++|||+||+|++|+.+.. ..+|+|++..+.+++++|+|
T Consensus         1 ~~i~~e~v~~la~LarL~lseee~e~~~~~l~~Il~~veql~evD~~~vep~~~~~~~~-~~lReD~~~~~~~~~~~l~n   79 (96)
T COG0721           1 MAIDREEVKHLAKLARLELSEEELEKFATQLEDILGYVEQLNEVDTEGVEPTTHPLEVS-NVLREDEVTEGLDREELLAN   79 (96)
T ss_pred             CccCHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccc-ccccCCCCCCCcCHHHHHhc
Confidence            67999999999999999999999999999999999999999999999999999998865 45999999999999999999


Q ss_pred             hh
Q 031606          136 LF  137 (156)
Q Consensus       136 ~f  137 (156)
                      |=
T Consensus        80 ap   81 (96)
T COG0721          80 AP   81 (96)
T ss_pred             CC
Confidence            73

>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed

Probab=99.85  E-value=4.1e-21  Score=138.50  Aligned_cols=81  Identities=21%  Similarity=0.297  Sum_probs=76.5

Q ss_pred             CCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCCCCCCCcccCCCChHHHHHh
Q 031606           56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICAGGTSLIIQ  135 (156)
Q Consensus        56 m~I~kEeVkkIA~LARL~LsEEEle~~~~qLn~ILe~~d~L~eVDTegVEPm~r~dev~~s~~ReDep~~~~~~~~LL~~  135 (156)
                      |+|++++|+|||+||||+|+++|++.+.++|++|++||++|+++||+||+|+.|+.+. ...+|+|++.++.+++++|.|
T Consensus         1 M~i~~e~i~~la~La~l~l~~ee~~~~~~~l~~il~~~~~l~~vd~~~vep~~~~~~~-~~~lReD~~~~~~~~e~~l~n   79 (95)
T PRK00034          1 MAITREEVKHLAKLARLELSEEELEKFAGQLNKILDFVEQLNEVDTEGVEPTTHPLDM-KNVLREDVVTESLPREEALKN   79 (95)
T ss_pred             CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccCcccc-cCCCCCCCCCCCCCHHHHHhc
Confidence            6899999999999999999999999999999999999999999999999999999764 456999999999999999998


Q ss_pred             hh
Q 031606          136 LF  137 (156)
Q Consensus       136 ~f  137 (156)
                      |-
T Consensus        80 ap   81 (95)
T PRK00034         80 AP   81 (95)
T ss_pred             Cc
Confidence            84

>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit

Probab=99.85  E-value=3.9e-21  Score=138.73  Aligned_cols=78  Identities=22%  Similarity=0.325  Sum_probs=73.9

Q ss_pred             CChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCCCCCCCcccCCCChHHHHHhh
Q 031606           58 LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICAGGTSLIIQL  136 (156)
Q Consensus        58 I~kEeVkkIA~LARL~LsEEEle~~~~qLn~ILe~~d~L~eVDTegVEPm~r~dev~~s~~ReDep~~~~~~~~LL~~~  136 (156)
                      ||+++|+|||+||||+|+++|++.+.++|++|++||++|+++||+||+||+|+.... ..+|+|++.++.+++.+|.||
T Consensus         1 i~~~~v~~lA~La~L~l~eee~~~~~~~l~~il~~~~~L~~vdt~~v~p~~~~~~~~-~~lReD~~~~~~~~e~~l~na   78 (93)
T TIGR00135         1 ISDEEVKHLAKLARLELSEEEAESFAGDLDKILGFVEQLNEVDTENVEPMTHPLEIS-NVLREDEPEEPLSRDDILKNA   78 (93)
T ss_pred             CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCcccCccccc-cCCCCCCCCCCCCHHHHHhcC
Confidence            689999999999999999999999999999999999999999999999999997654 469999999999999999987

This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.

>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional

Probab=99.81  E-value=5.9e-20  Score=165.86  Aligned_cols=82  Identities=16%  Similarity=0.209  Sum_probs=76.6

Q ss_pred             CCCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCCCCCCCcccCCCChHHHHH
Q 031606           55 RSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICAGGTSLII  134 (156)
Q Consensus        55 ~m~I~kEeVkkIA~LARL~LsEEEle~~~~qLn~ILe~~d~L~eVDTegVEPm~r~dev~~s~~ReDep~~~~~~~~LL~  134 (156)
                      ++++|+|+|+|+|+||||+++|||+|++.+||++|++|+|+|+||||+|||||.|+.+...+.+|||+|+++.++|++|.
T Consensus       386 k~~ItkEeVkKLAkLARLeLSEEElEkl~~dLn~ILdyVEkLnEVDTegVEPM~hp~e~~~nvLREDeV~~sl~rEeaLs  465 (477)
T PRK12821        386 KQQLNKDELKKLARLVMFDLDDAELEKLQVEFKDITSSFKQVEKIDTTNVKPMYAPFSNSPTPLRKDKDVVQKHQKILLK  465 (477)
T ss_pred             cccCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcCCCCCcccCcccccCCCCCCCCCCCCCHHHHHh
Confidence            36899999999999999999999999999999999999999999999999999999643345699999999999999999


Q ss_pred             hh
Q 031606          135 QL  136 (156)
Q Consensus       135 ~~  136 (156)
                      ||
T Consensus       466 NA  467 (477)
T PRK12821        466 NC  467 (477)
T ss_pred             cC
Confidence            87

>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional

Probab=99.59  E-value=3.2e-15  Score=141.17  Aligned_cols=81  Identities=10%  Similarity=0.096  Sum_probs=73.3

Q ss_pred             CCCCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCCCCCCCcccCCC---ChH
Q 031606           54 TRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICA---GGT  130 (156)
Q Consensus        54 ~~m~I~kEeVkkIA~LARL~LsEEEle~~~~qLn~ILe~~d~L~eVDTegVEPm~r~dev~~s~~ReDep~~~~---~~~  130 (156)
                      ..-.=++++|+|||+||||+|+|+|++.+.+||++||+||++|++||| +|+||.|+.+..+ .+|+|+|+++.   +++
T Consensus       608 ~~~~~~~~~V~~iA~LARL~l~eeE~~~~~~~L~~IL~~ve~L~evdt-~VeP~~~~~~~~~-~lReD~v~~~~~~~~~e  685 (706)
T PRK12820        608 PGDAEKEDLIDHLSWVSRIGFAEAERAAIESALADAEELAAQLEDIAC-DEEPLFSPAPAAN-RMGEGLEARECSFAATG  685 (706)
T ss_pred             cccccchHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCCcCcccccc-CCCCCcCCCCCCccCHH
Confidence            334668999999999999999999999999999999999999999999 5999999976644 59999999997   599


Q ss_pred             HHHHhh
Q 031606          131 SLIIQL  136 (156)
Q Consensus       131 ~LL~~~  136 (156)
                      ++|.||
T Consensus       686 ~~L~nA  691 (706)
T PRK12820        686 EILKNA  691 (706)
T ss_pred             HHHhcC
Confidence            999986

>PF02686 Glu-tRNAGln: Glu-tRNAGln amidotransferase C subunit; InterPro: IPR003837 Glu-tRNAGln amidotransferase is a heterotrimeric enzyme that is required for correct decoding of glutamine codons during translation

Probab=99.56  E-value=3.6e-15  Score=101.93  Aligned_cols=62  Identities=18%  Similarity=0.289  Sum_probs=41.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCCCCCCCcccCCCChHHHHHhh
Q 031606           74 LTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICAGGTSLIIQL  136 (156)
Q Consensus        74 LsEEEle~~~~qLn~ILe~~d~L~eVDTegVEPm~r~dev~~s~~ReDep~~~~~~~~LL~~~  136 (156)
                      |+|+|++.+.++|++|++||++|++|||+||+||+|+.+. ...+|+|++.++.+++++|.||
T Consensus         1 l~eeE~~~~~~~l~~il~~~~~l~~vdt~~v~p~~~~~~~-~~~lReD~~~~~~~~e~iL~nA   62 (72)
T PF02686_consen    1 LTEEELEKLTKQLNDILDYVEKLQEVDTEGVEPMYHPVEM-SNPLREDEVEESLDREEILKNA   62 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHTTGGGS--TT----S-SS-S-S--EB-S-----CTHHHHHTT-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccccc-cCCCCCCCCCCCCCHHHHHhcc
Confidence            6899999999999999999999999999999999999764 4569999999999999999987

The Glu-tRNA Gln amidotransferase enzyme is an important translational fidelity mechanism replacing incorrectly charged Glu-tRNAGln with the correct Gln-tRANGln via transmidation of the misacylated Glu-tRNAGln []. This activity supplements the lack of glutaminyl-tRNA synthetase activity in Gram-positive eubacteria, cyanobacteria, archaea, and organelles [].; GO: 0006450 regulation of translational fidelity; PDB: 2DQN_C 3IP4_C 2G5I_C 2F2A_C 2G5H_C 2DF4_C 3AL0_C 3KFU_G 3H0R_I 3H0L_U ....

>TIGR01827 gatC_rel Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase, subunit C, putative

Probab=98.30  E-value=1.1e-06  Score=62.35  Aligned_cols=51  Identities=10%  Similarity=0.155  Sum_probs=40.8

Q ss_pred             HHHHHHHHH-HHHHhccCCCCCCCCcccccCCCCCCCCCCcccCCCC--hHHHHHhh
Q 031606           83 APKIRQVID-WFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICAG--GTSLIIQL  136 (156)
Q Consensus        83 ~~qLn~ILe-~~d~L~eVDTegVEPm~r~dev~~s~~ReDep~~~~~--~~~LL~~~  136 (156)
                      .++-..|++ |-++|++||  ||+||+|+.... +.+|+|+++++.+  ++.+|.||
T Consensus         3 ~~~~~~~~~~~~e~L~evd--~VeP~~~~~~~~-n~lReD~~~~s~~~~re~iL~NA   56 (73)
T TIGR01827         3 LKEAEEILEEFSERLEDVD--EEEETYYISDGS-NKFREDEEPRCDPEFKKKMLENA   56 (73)
T ss_pred             HHHHHHHHHHHHHHHHccC--CCCCcccccccc-cCCCCCcCCCCcchhHHHHHHcC
Confidence            344455553 557899999  999999997643 4699999999998  99999987

This model represents a family small family related to GatC, the third subunit of an enzyme for completing the charging of tRNA(Gln) by amidating the Glu-tRNA(Gln). The few known archaea that contain a member of this family appear to produce Asn-tRNA(Asn) by an analogous amidotransferase reaction. This protein is proposed to substitute for GatC in the charging of both tRNAs.

>KOG4247 consensus Mitochondrial DNA polymerase accessory subunit [Replication, recombination and repair]

Probab=96.67  E-value=0.0055  Score=48.83  Aligned_cols=80  Identities=13%  Similarity=0.118  Sum_probs=66.0

Q ss_pred             CCCCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCCCCCCCcccCCCChHHHH
Q 031606           54 TRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICAGGTSLI  133 (156)
Q Consensus        54 ~~m~I~kEeVkkIA~LARL~LsEEEle~~~~qLn~ILe~~d~L~eVDTegVEPm~r~dev~~s~~ReDep~~~~~~~~LL  133 (156)
                      .|.+|+.+.+.|+..|+-..++.|+.   ...|..-+.-...|.-||++|||||-...+..+-...+|+-...+.-++..
T Consensus        44 pmpqidaklinhlerlslvrfdseqa---vanlrssirvakrlelvdvegvepmhtvwedqecptfedveedplpieevf  120 (175)
T KOG4247|consen   44 PMPQIDAKLINHLERLSLVRFDSEQA---VANLRSSIRVAKRLELVDVEGVEPMHTVWEDQECPTFEDVEEDPLPIEEVF  120 (175)
T ss_pred             CcchhhHHHHHHHHhhhheeecHHHH---HHHHHHHHhHHhheeeeeccCccchhhhcccccCCcccccccCCcCHHHHH
Confidence            56689999999999999999887765   667888888899999999999999966655555557789988888888777


Q ss_pred             Hhh
Q 031606          134 IQL  136 (156)
Q Consensus       134 ~~~  136 (156)
                      +||
T Consensus       121 rna  123 (175)
T KOG4247|consen  121 RNA  123 (175)
T ss_pred             hcc
Confidence            775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
3ip4_C	100	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase;	3e-11
3kfu_G	92	Glutamyl-tRNA(Gln) amidotransferase subunit C; ASP	2e-10
3h0l_C	94	Glutamyl-tRNA(Gln) amidotransferase subunit C; mul	3e-10

>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C Length = 100

 Score = 56.0 bits (136), Expect = 3e-11
 Identities = 14/51 (27%), Positives = 27/51 (52%)

Query: 56  SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
           + +   +V  +A  AR+ ++P E EE A  +  ++D+  Q    D + V+P
Sbjct: 2   TKVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEP 52

>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 92

 Score = 52.9 bits (128), Expect = 2e-10
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 57  SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
            L P  + +L   A+I L+P E       +++++D+   L  V+    + 
Sbjct: 5   ELSPELLRKLETLAKIRLSPEEEALLLQDLKRILDFVDALPRVEEGGAEE 54

>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C* Length = 94

 Score = 52.9 bits (128), Expect = 3e-10
 Identities = 14/45 (31%), Positives = 30/45 (66%)

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
            V ++A+ AR+ L   E+E F  ++  ++D+  QL+++D ++V+P
Sbjct: 6   WVLKIAKLARLELKEEEIEVFQKQLSDILDFIDQLKELDTENVEP 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
3ip4_C	100	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase;	99.91
3h0l_C	94	Glutamyl-tRNA(Gln) amidotransferase subunit C; mul	99.89
3kfu_G	92	Glutamyl-tRNA(Gln) amidotransferase subunit C; ASP	99.86
3al0_C	592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	99.75

>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C

Probab=99.91  E-value=3.2e-24  Score=157.15  Aligned_cols=81  Identities=17%  Similarity=0.225  Sum_probs=75.7

Q ss_pred             CCCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCCCCCCCcccCCCChHHHHH
Q 031606           55 RSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICAGGTSLII  134 (156)
Q Consensus        55 ~m~I~kEeVkkIA~LARL~LsEEEle~~~~qLn~ILe~~d~L~eVDTegVEPm~r~dev~~s~~ReDep~~~~~~~~LL~  134 (156)
                      ||+||+++|+|||+||||+|+++|++.+.++|++||+||++|++|||+||+||+|+.+.. ..+|+|++.++.+++++|.
T Consensus         1 Mm~i~~e~v~~iA~LArL~l~eeE~~~~~~~l~~Il~~ve~L~evDt~~VeP~~~~~~~~-~~lReD~v~~~~~~e~~L~   79 (100)
T 3ip4_C            1 MTKVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQ-NVLREDKAIKGIPQELALK   79 (100)
T ss_dssp             --CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHGGGGGSCCTTCCCCSCCSCCC-CCCBCSCCCCCCCHHHHHT
T ss_pred             CCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccc-CCCCCCCCCCCCCHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999998764 3599999999999999999


Q ss_pred             hh
Q 031606          135 QL  136 (156)
Q Consensus       135 ~~  136 (156)
                      ||
T Consensus        80 nA   81 (100)
T 3ip4_C           80 NA   81 (100)
T ss_dssp             TC
T ss_pred             cC
Confidence            97

>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*

Probab=99.89  E-value=3.6e-23  Score=149.90  Aligned_cols=78  Identities=19%  Similarity=0.350  Sum_probs=74.4

Q ss_pred             CCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCCCCCCCcccCCCChHHHHHhh
Q 031606           57 SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICAGGTSLIIQL  136 (156)
Q Consensus        57 ~I~kEeVkkIA~LARL~LsEEEle~~~~qLn~ILe~~d~L~eVDTegVEPm~r~dev~~s~~ReDep~~~~~~~~LL~~~  136 (156)
                      +||+++|+|||+||||+|+++|++.|.++|++|++||++|++|||+||+||+|+.+.  ..+|+|++.++.+++++|.||
T Consensus         1 ~i~~e~v~~iA~LArL~l~eee~~~~~~~l~~Il~~ve~L~evDt~~VeP~~~~~~~--~~lReD~v~~~~~~e~~L~nA   78 (94)
T 3h0l_C            1 MVDREWVLKIAKLARLELKEEEIEVFQKQLSDILDFIDQLKELDTENVEPYIQEFEE--TPMREDEPHPSLDREKALMNA   78 (94)
T ss_dssp             -CCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTTGGGSCCTTCCCCCCCCSS--CCCBCSCCCCCCCHHHHHTTC
T ss_pred             CCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccCcccc--cCCCCCCCCCCCCHHHHHHcC
Confidence            489999999999999999999999999999999999999999999999999999876  569999999999999999997

>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}

Probab=99.86  E-value=9.8e-22  Score=142.19  Aligned_cols=74  Identities=18%  Similarity=0.246  Sum_probs=69.6

Q ss_pred             CCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCCCCCCCcccCCCChHHHHHh
Q 031606           56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICAGGTSLIIQ  135 (156)
Q Consensus        56 m~I~kEeVkkIA~LARL~LsEEEle~~~~qLn~ILe~~d~L~eVDTegVEPm~r~dev~~s~~ReDep~~~~~~~~LL~~  135 (156)
                      |+||+++|+|||+||||+|+++|++.+.++|++||+||++|++|||+||+|       ....+|+|++.++.+++++|.|
T Consensus         4 M~i~~e~V~~iA~LArL~l~eeE~~~~~~~l~~Il~~ve~L~evDt~~VeP-------~~~~lReD~v~~~~~~e~~L~n   76 (92)
T 3kfu_G            4 MELSPELLRKLETLAKIRLSPEEEALLLQDLKRILDFVDALPRVEEGGAEE-------ALGRLREDEPRPSLPQAEALAL   76 (92)
T ss_dssp             -CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCC-------CCCCCBCSCCCCCCCHHHHHTT
T ss_pred             CccCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-------CcCCCCCCCCCCCCCHHHHHHc
Confidence            789999999999999999999999999999999999999999999999999       2345999999999999999998


Q ss_pred             h
Q 031606          136 L  136 (156)
Q Consensus       136 ~  136 (156)
                      |
T Consensus        77 A   77 (92)
T 3kfu_G           77 A   77 (92)
T ss_dssp             C
T ss_pred             C
Confidence            7

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}

Probab=99.75  E-value=6.8e-19  Score=161.17  Aligned_cols=82  Identities=17%  Similarity=0.235  Sum_probs=76.3

Q ss_pred             CCCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCCCCCCCcccCCCChHHHHH
Q 031606           55 RSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICAGGTSLII  134 (156)
Q Consensus        55 ~m~I~kEeVkkIA~LARL~LsEEEle~~~~qLn~ILe~~d~L~eVDTegVEPm~r~dev~~s~~ReDep~~~~~~~~LL~  134 (156)
                      ||+||+++|+|||+||||+|+|+|++.+.+||++||+||++|++|||+|||||.|+.+..+ .+|+|++.++.+++++|.
T Consensus         2 ~m~i~~e~v~~iA~LArL~l~eee~~~~~~~l~~Il~~ve~L~evDt~~Vep~~~~~~~~~-~lReD~v~~~~~~e~~L~   80 (592)
T 3al0_C            2 GIKVTKDLVLHLENLARLELSEDQRESLMKDFQEILDYVELLNEVDVEGVEPMYTPVEDSA-KLRKGDPRFFEMRDLIKK   80 (592)
T ss_dssp             --CCCSTHHHHHHTTTTCCCCSSSHHHHHHHHHHHHHHHTTTCSSCCSSCCCCSCCSCSCC-CCBCCCCCCCTTHHHHHT
T ss_pred             CCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcccCCCCCCcCcccccccc-cCCCCcCCCCCCHHHHHh
Confidence            5889999999999999999999999999999999999999999999999999999987654 599999999999999999


Q ss_pred             hhh
Q 031606          135 QLF  137 (156)
Q Consensus       135 ~~f  137 (156)
                      ||=
T Consensus        81 nAP   83 (592)
T 3al0_C           81 NFP   83 (592)
T ss_dssp             TCS
T ss_pred             cCc
Confidence            974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	156
d2f2ac1	92	a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C	9e-12

>d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 1280]} Length = 92

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Glu-tRNAGln amidotransferase C subunit
family: Glu-tRNAGln amidotransferase C subunit
domain: Glu-tRNAGln amidotransferase C subunit, GatC
species: Staphylococcus aureus [TaxId: 1280]

 Score = 55.9 bits (135), Expect = 9e-12
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
           +V  +A  AR+ ++P E EE A  +  ++D+  Q    D + V+P
Sbjct: 6   EVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEP 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d2f2ac1	92	Glu-tRNAGln amidotransferase C subunit, GatC {Stap	99.86

>d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Glu-tRNAGln amidotransferase C subunit
family: Glu-tRNAGln amidotransferase C subunit
domain: Glu-tRNAGln amidotransferase C subunit, GatC
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.86  E-value=2.9e-22  Score=142.07  Aligned_cols=79  Identities=18%  Similarity=0.231  Sum_probs=74.8

Q ss_pred             CCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCCCCCCCcccCCCChHHHHHhh
Q 031606           57 SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKREKNTLCYYPRICAGGTSLIIQL  136 (156)
Q Consensus        57 ~I~kEeVkkIA~LARL~LsEEEle~~~~qLn~ILe~~d~L~eVDTegVEPm~r~dev~~s~~ReDep~~~~~~~~LL~~~  136 (156)
                      +||+++|+|||+||||+|+++|++.+.++|++||+||++|++|||+||+||.|+.+.. ..+|+|++.++.+++++|.|+
T Consensus         1 KIs~e~i~~lA~LarL~l~deE~~~~~~~l~~Il~~~~~L~~vDt~~vep~~~~~~~~-~~lReD~~~~~~~~~~~l~na   79 (92)
T d2f2ac1           1 KVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQ-NVLREDKAIKGIPQELALKNA   79 (92)
T ss_dssp             CCCHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHHHHGGGGGSCCTTCCCCSCSSCCC-CCCBCCCCCCCCCHHHHHTTC
T ss_pred             CCCHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCCccccccc-cCCCCCcCCCCCCHHHHHHcC
Confidence            5899999999999999999999999999999999999999999999999999998754 469999999999999999986