Citrus Sinensis ID: 031623

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MDGKREMSSSFSFTTDLFGTKKSPPPSSTGIFASILSPPSTAMGRNSSNSEILGSWQEQPSGNQAWNTKQGTPALHTESASCNIPNKDKSYIFKEERAEPCHLSSSLYYGGQDIYSHSLDTRTPASYPLFKKDGEDDDSDNSNGASRGNWWQGTQI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccEEcccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHccccccccccccccHcccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdgkremsssfsfttdlfgtkkspppsstgifasilsppstamgrnssnseilgswqeqpsgnqawntkqgtpalhtesascnipnkdksyifkeeraepchlssslyyggqdiyshsldtrtpasyplfkkdgedddsdnsngasrgnwwqgtqi
Flexible Loop (DISEMBL)
mdgkremsssfSFTTDLFGTKKSPPPSSTGIFASILSPPSTAMGRNSSNSEILGSWQEQPSGNQAWNTKQGTPALhtesascnipnKDKSYIFKEERAEPCHLSSSLYYGGQDIYSHSLDTRTPASYPLFkkdgedddsdnsngasrgnwwqgtqi
Low Complexity Region (SEG)
MDGKREMSSSFSFTTDLFGTKKSPPPSSTGIFASILSPPSTAMGRNSSNSEILGSWQEQPSGNQAWNTKQGTPALHTESASCNIPNKDKSYIFKEERAEPCHLSSSLYYGGQDIYSHSLDTRTPASYPLFKKdgedddsdnsngasrgnWWQGTQI
Disordered region (IsUnstruct)
******************************************************************************************YIFK****EPCHLSSSLYYGGQDIYSH***************************************
Disordered Region (DISOPRED)
*****************************************************************************************************HLSSSLYYGGQDIY*****************************ASRGNWWQGT**
Disordered Region (DISEMBL)
***********SFTTDLFGTKKSPPPSSTGIFASILSPPSTAMGRNSSNSEILGSWQEQPSGNQAWNTKQGTPALHTESASCNIPNKDKSYIFKEERAEPCHLSSSLYYGGQDIYSHSLDTRTPASYPLFKKDG************RGNWWQGTQI
Disordered Region (DISPRO)
**********************************************************************************************EERAEPCHLSSSLYYGGQDIYS****************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGKREMSSSFSFTTDLFGTKKSPPPSSTGIFASILSPPSTAMGRNSSNSEILGSWQEQPSGNQAWNTKQGTPALHTESASCNIPNKDKSYIFKEERAEPCHLSSSLYYGGQDIYSHSLDTRTPASYPLFKKDGEDDDSDNSNGASRGNWWQGTQI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
255558924	160	conserved hypothetical protein [Ricinus	0.910	0.887	0.673	2e-49
225434778	154	PREDICTED: uncharacterized protein LOC10	0.955	0.967	0.641	2e-48
224106371	162	predicted protein [Populus trichocarpa]	0.903	0.870	0.611	1e-42
209967471	157	hypothetical protein [Populus euphratica	0.942	0.936	0.512	7e-31
209967469	157	hypothetical protein [Populus tremula x	0.942	0.936	0.518	2e-30
224087557	174	predicted protein [Populus trichocarpa]	0.942	0.844	0.468	1e-29
225440524	159	PREDICTED: uncharacterized protein LOC10	0.955	0.937	0.490	5e-28
449460363	158	PREDICTED: uncharacterized protein LOC10	0.955	0.943	0.425	7e-25
388494636	153	unknown [Lotus japonicus]	0.891	0.908	0.448	1e-24
296086145	160	unnamed protein product [Vitis vinifera]	0.967	0.943	0.475	4e-24

>gi|255558924|ref|XP_002520485.1| conserved hypothetical protein [Ricinus communis] gi|223540327|gb|EEF41898.1| conserved hypothetical protein [Ricinus communis]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/144 (67%), Positives = 112/144 (77%), Gaps = 2/144 (1%)

Query: 13  FTTDLFGTKKSPPPSSTGIFASILSPPSTAMGRNSSNSEILGSWQEQPSGNQAWNTKQGT 72
           FT DLFGTK+SPP SSTGIFASI  PPS  +GR SS SE++GSWQ Q S NQ WNTK+G 
Sbjct: 14  FTADLFGTKESPPSSSTGIFASIFPPPSKVLGRKSSGSEVIGSWQRQSSENQGWNTKRGA 73

Query: 73  PALHTESASCNIPNKDKSYIFKEERAEPCHLSSSLYYGGQDIYSHSLDTRTPASYPLFKK 132
           PA+ +E+AS N+PNKD++    EER EPCHLSSSLYYGGQD YS    +R   SYP+FKK
Sbjct: 74  PAMSSEAASYNMPNKDRNSTLMEERGEPCHLSSSLYYGGQDNYSQPPSSRNSGSYPIFKK 133

Query: 133 DGEDDD--SDNSNGASRGNWWQGT 154
           DG DDD   +NSNGASRGNWWQG+
Sbjct: 134 DGVDDDPNGNNSNGASRGNWWQGS 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434778|ref|XP_002281905.1| PREDICTED: uncharacterized protein LOC100263768 [Vitis vinifera] gi|297745986|emb|CBI16042.3| unnamed protein product [Vitis vinifera]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 123/156 (78%), Gaps = 7/156 (4%)

Query: 1   MDGKREMSSSFSFTTDLFGTKKSPPPSSTGIFASILSPPSTAMGRNSSNSEILGSWQEQP 60
           M+G+R++ SS SFT++LFGTK+SPP +S+GIFASI  PPSTA+GRN +NSE+ G      
Sbjct: 1   MEGRRQVGSSSSFTSELFGTKESPPSNSSGIFASIFPPPSTAVGRNPANSEMRGL----- 55

Query: 61  SGNQAWNTKQGTPALHTES--ASCNIPNKDKSYIFKEERAEPCHLSSSLYYGGQDIYSHS 118
           SGNQ W+TKQGTP +      AS  IPNKDK+ IF+EER EPCHLSSSLYYGGQDIYS+S
Sbjct: 56  SGNQTWDTKQGTPDMGKSGVGASSIIPNKDKNQIFQEERVEPCHLSSSLYYGGQDIYSNS 115

Query: 119 LDTRTPASYPLFKKDGEDDDSDNSNGASRGNWWQGT 154
             T+T  SYP+FKKD +D + +NS GASRGNWWQG+
Sbjct: 116 SSTQTSGSYPVFKKDEDDPNGNNSQGASRGNWWQGS 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106371|ref|XP_002314144.1| predicted protein [Populus trichocarpa] gi|222850552|gb|EEE88099.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 111/144 (77%), Gaps = 3/144 (2%)

Query: 13  FTTDLFGTKKSPPPSSTGIFASILSPPSTAMGRNSSNSEILGSWQEQPSGNQAWNTKQGT 72
           FT DLFGT +S P SS GIFAS+  PPST +GR SS SE+ GSWQ+Q  GNQAW  KQG+
Sbjct: 17  FTADLFGTTESAPVSSAGIFASMFPPPSTVVGRKSSGSEVTGSWQKQSYGNQAWYPKQGS 76

Query: 73  PALHTESASCNIPNKDKSYIFKEERAEPCHLSSSLYYGGQDIYSHSLDTRTPASYPLFKK 132
           PA ++++AS ++P+KD++ + +EER EPCHLSSSLYYGGQ+ YS S  T+   SYP+FKK
Sbjct: 77  PA-NSQAASYSMPDKDRNSVIQEERVEPCHLSSSLYYGGQENYSQSPSTQMAGSYPIFKK 135

Query: 133 DGEDDDSDNSN--GASRGNWWQGT 154
           DG +DD + SN   ASRGNWWQG+
Sbjct: 136 DGGEDDPNGSNPHSASRGNWWQGS 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209967471|gb|ACJ02360.1| hypothetical protein [Populus euphratica]

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 107/160 (66%), Gaps = 13/160 (8%)

Query: 1   MDGKREM-SSSFSFTTDLFGTKKSPPPSSTGIFASILSPPS-TAMGRNSSNSEILGSWQE 58
           M+GK++  SSS SFT+DLFG+K++ P SS GIF SI +P S   +GR S   E+  + ++
Sbjct: 1   MEGKKQTGSSSSSFTSDLFGSKENSP-SSMGIFGSIFAPASPKVLGRESLRFEV--AEKK 57

Query: 59  QPSGNQAWNTKQGTPA-----LHTESASCNIPNKDKSYIFKEERAEPCHLSSSLYYGGQD 113
           Q S + AWNTK G PA        E  S ++PNKD S I++E+R +PCHLSSS+YYGGQD
Sbjct: 58  QDSADDAWNTKSGIPASDLTSKMNEDESQSVPNKDMSSIYQEQRVQPCHLSSSIYYGGQD 117

Query: 114 IYSHSLDTRTPASYPLFKKDGEDDDSDNSNGASRGNWWQG 153
           IY H     T +  P+FKKDG +DD   +  ASRGNWWQG
Sbjct: 118 IYHHPQTAHTSSMNPMFKKDGPEDD---TGSASRGNWWQG 154

Source: Populus euphratica

Species: Populus euphratica

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209967469|gb|ACJ02359.1| hypothetical protein [Populus tremula x Populus alba]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/160 (51%), Positives = 106/160 (66%), Gaps = 13/160 (8%)

Query: 1   MDGKREM-SSSFSFTTDLFGTKKSPPPSSTGIFASILSPPS-TAMGRNSSNSEILGSWQE 58
           M+GK++  SSS SFT+DLFG+K+    SSTGIF SI +P S   +GR S   E+    ++
Sbjct: 1   MEGKKQTGSSSSSFTSDLFGSKEYSS-SSTGIFGSIFAPASPKVLGRESLRFEV--DEKK 57

Query: 59  QPSGNQAWNTKQGTP-----ALHTESASCNIPNKDKSYIFKEERAEPCHLSSSLYYGGQD 113
           Q S + AWNTK GTP     +   E  S +IPNKD S I++E+R +PCHLSSS+YYGGQD
Sbjct: 58  QDSADDAWNTKSGTPTSDLTSKMNEGESQSIPNKDMSSIYQEQRVQPCHLSSSIYYGGQD 117

Query: 114 IYSHSLDTRTPASYPLFKKDGEDDDSDNSNGASRGNWWQG 153
           IY H     T +  P+FKKDG +DD   +  ASRGNWWQG
Sbjct: 118 IYHHPQTAHTSSKNPMFKKDGPEDD---TGSASRGNWWQG 154

Source: Populus tremula x Populus alba

Species: Populus tremula x Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087557|ref|XP_002308189.1| predicted protein [Populus trichocarpa] gi|222854165|gb|EEE91712.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/177 (46%), Positives = 109/177 (61%), Gaps = 30/177 (16%)

Query: 1   MDGKREM-SSSFSFTTDLFGTKKSPPPSSTGIFASILSPPS------------------T 41
           M+GK++  SSS SFT+DLFG+K++ P SS GIF SI +P S                   
Sbjct: 1   MEGKKQTGSSSSSFTSDLFGSKENSP-SSMGIFGSIFAPASPKVLIIARRAKFIVLVLIQ 59

Query: 42  AMGRNSSNSEILGSWQEQPSGNQAWNTKQGTPA-----LHTESASCNIPNKDKSYIFKEE 96
            +GR S   E+  + ++Q S + AWNTK GTPA        E  S ++PNKD S I++E+
Sbjct: 60  VLGRESLRFEV--AEKKQDSADDAWNTKSGTPASDLTSKMNEGESQSVPNKDMSSIYQEQ 117

Query: 97  RAEPCHLSSSLYYGGQDIYSHSLDTRTPASYPLFKKDGEDDDSDNSNGASRGNWWQG 153
           R +PCHLSSS+YYGGQDIY H     T +  P+FKKDG +DD+ +   ASRGNWWQG
Sbjct: 118 RVQPCHLSSSIYYGGQDIYHHPQTAHTSSINPMFKKDGPEDDTGS---ASRGNWWQG 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440524|ref|XP_002275314.1| PREDICTED: uncharacterized protein LOC100252790 isoform 1 [Vitis vinifera] gi|359481721|ref|XP_003632663.1| PREDICTED: uncharacterized protein LOC100252790 isoform 2 [Vitis vinifera] gi|297740289|emb|CBI30471.3| unnamed protein product [Vitis vinifera]

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 107/161 (66%), Gaps = 12/161 (7%)

Query: 1   MDGKREM--SSSFSFTTDLFGTKKS--PPPSSTGIFASILSPPSTAMGRNSSNSEILGSW 56
           M+GK+    SSS SF TDLFG+K+S  P PSSTGIFASI S  S  +GR S   ++  + 
Sbjct: 1   MEGKKRAGSSSSSSFATDLFGSKESSYPSPSSTGIFASIFSTSSKVLGRESLRPDL--TK 58

Query: 57  QEQPSGNQAWNTKQGTP--ALH-TESASCNIPNKDKSYIFKEERAEPCHLSSSLYYGGQD 113
           ++Q SGN+ WN K GT   AL  +E  S +I N+D    ++E+R +PCHLSSS+YYGGQD
Sbjct: 59  KKQDSGNEVWNAKPGTTENALQQSEGESQSISNRDTGSFYQEQRVQPCHLSSSIYYGGQD 118

Query: 114 IYSHSLDTRTPASYPLFKKDGEDDDSDNSNGASRGNWWQGT 154
           IY H  ++++     + KKD  +DD+ +   ASRGNWWQG+
Sbjct: 119 IYFHPQNSQSSGMPSMLKKDSGEDDTGS---ASRGNWWQGS 156

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460363|ref|XP_004147915.1| PREDICTED: uncharacterized protein LOC101215701 [Cucumis sativus]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 99/160 (61%), Gaps = 11/160 (6%)

Query: 1   MDGKREMSSSFSFTT---DLFGTKKSPPPSSTGIFASILSPPSTAMGRNSSNSEILGSWQ 57
           M+GK+ +    S ++   DLFG+ ++   S+TGIF SI +P S  +GR S  S      +
Sbjct: 1   MEGKKHVGLGSSSSSLTTDLFGSNETSYSSTTGIFGSIFAPSSKVLGRESLLSHT--KER 58

Query: 58  EQPSGNQAWNTKQGTP---ALHTESASCNIPNKDKSYIFKEERAEPCHLSSSLYYGGQDI 114
           E+ S N+ WN   G     A HT+  S    NKD S I++++RA+PCHLSSS+YYGGQD+
Sbjct: 59  ERNSVNEPWNPNAGAQDDNANHTQKESQETKNKDMSSIYQDQRAQPCHLSSSIYYGGQDV 118

Query: 115 YSHSLDTRTPASYPLFKKDGEDDDSDNSNGASRGNWWQGT 154
           Y+H  ++    +   +KK+G +DDS +   ASRGNWWQG+
Sbjct: 119 YTHPQNSYNSGANSAYKKEGGEDDSGS---ASRGNWWQGS 155

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494636|gb|AFK35384.1| unknown [Lotus japonicus]

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/165 (44%), Positives = 95/165 (57%), Gaps = 26/165 (15%)

Query: 1   MDGKREMSSSFSFTTDLFGTKKSPPPSSTGIFASILSPPS-TAMGRNSSNSEILGSWQEQ 59
           MD K++  +S SFT +LFG+K+S P  S+GIF SI SPPS   +GR S  SE+       
Sbjct: 1   MDEKKQKGTSSSFTAELFGSKESHPSPSSGIFGSIFSPPSPKVLGRESLRSEL-----SV 55

Query: 60  PSGNQAWNTKQGT----------PALHTESASCNIPNKDKSYIFKEERAEPCHLSSSLYY 109
            + N+ W++K G            A HTE       NKD S+I++ +R  PC LSSS+YY
Sbjct: 56  KTANETWSSKIGIQDDVSKGNYGEAQHTE-------NKDMSFIYQHQRIPPCPLSSSIYY 108

Query: 110 GGQDIYSHSLDTRTPASYPLFKKDGEDDDSDNSNGASRGNWWQGT 154
           GGQD Y HS  T+   S  L K D  +DD   S  ASRGNWWQG+
Sbjct: 109 GGQDTYYHSQSTQNAGSNTLHKNDVGNDD---SGMASRGNWWQGS 150

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086145|emb|CBI31586.3| unnamed protein product [Vitis vinifera]

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 104/160 (65%), Gaps = 9/160 (5%)

Query: 1   MDGKREMSSSFSFTTDLFGTK--KSPPPSSTGIFASILSPPSTAMGRNSSNSEILGSWQE 58
           M+  +++ SS S T+DLFG K   S    S+G+F SI  PPS+  GRNSS++  +GS+++
Sbjct: 1   MENTKQVGSSSSITSDLFGPKDSSSSSSLSSGLFGSIFQPPSSVPGRNSSHTGNIGSFRK 60

Query: 59  QPSGNQAWNTKQGTPALHTESASCNIPNKDKSYIFKEERAEPCHLSSSLYYGGQDIYSHS 118
           Q SGNQ  N K GTP   T+  S    +KD+  I+  E  EPC+ SSS+YYGGQ++Y  S
Sbjct: 61  QGSGNQVGNGKHGTPDNITQICSGE-SSKDRGSIYHNETVEPCYFSSSIYYGGQEVY--S 117

Query: 119 LDTRTPASYPL--FKKDGEDDDSD--NSNGASRGNWWQGT 154
            + R   S+P+   KKDG +DD +  NSN ASRGNWWQG+
Sbjct: 118 PNARNTESHPIVTMKKDGGEDDLNGSNSNSASRGNWWQGS 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
TAIR|locus:2185168	149	SIS "AT5G02020" [Arabidopsis t	0.839	0.879	0.340	8.8e-15
TAIR|locus:1009023254	146	AT3G55646 "AT3G55646" [Arabido	0.801	0.856	0.322	5.8e-11
TAIR|locus:504955928	151	AT2G39855 "AT2G39855" [Arabido	0.673	0.695	0.379	8.4e-10
TAIR|locus:2153286	135	AT5G59080 "AT5G59080" [Arabido	0.775	0.896	0.314	2.9e-09
TAIR|locus:2102727	153	AT3G46880 "AT3G46880" [Arabido	0.493	0.503	0.337	1.1e-05

TAIR|locus:2185168 SIS "AT5G02020" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 50/147 (34%), Positives = 69/147 (46%)

Query:     9 SSFSFTTDLFGTKKSPP-PSSTGIFASILSPPSTAMGRNSSNSEILGSWQEQPSGNQAWN 67
             SS S T++LFG++++P  PSS+GI  SI  PPS  +GR S         QE  +G   WN
Sbjct:    15 SSSSLTSELFGSRENPSSPSSSGILGSIFPPPSKVLGRESVR-------QETVTGG-CWN 66

Query:    68 TKQGTPALHTESASCNIPNKDKSYIFKEERAEPCHLSSSLYYGGQDIYSHSLDTRTPASY 127
              K      + +       N    Y  +++R +PCHLSSS+YYGG D+Y      +   S 
Sbjct:    67 EKTSKTGGNVDRNREQQENHGSGYQ-QDQRVQPCHLSSSIYYGGPDVY---FQPQNSTSN 122

Query:   128 PLFKKXXXXXXXXXXXXXXXXXWWQGT 154
                KK                 WWQG+
Sbjct:   123 STNKKDGGEDDSGSASRGN---WWQGS 146

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009651 "response to salt stress" evidence=IMP

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:1009023254 AT3G55646 "AT3G55646" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 48/149 (32%), Positives = 69/149 (46%)

Query:     8 SSSFSFTTDLFGTKKSPPPSS--TGIFASILSPPSTAMGRNSSNSEILGSWQEQPSGNQA 65
             SSS S    +FG + S   SS  TG+F SI  PPS         ++ LG  ++    +Q 
Sbjct:    17 SSSLSSFDHIFGPRVSSSSSSSATGLFKSIFPPPS---------ADQLG--RQVDFASQG 65

Query:    66 WNTKQGTPALHTESASCNIPNKDKSYIFKEERAEPCHLSSSLYYGGQDIYSHSLDTRTPA 125
              + K  +P    E ++     K+K   + EE   PCHLSSSLYYGGQ+ YS +    T  
Sbjct:    66 GHVKYQSPNAKGERSN----KKEKKSYYNEETEPPCHLSSSLYYGGQETYSST----TTT 117

Query:   126 SYPLFKKXXXXXXXXXXXXXXXXXWWQGT 154
             ++  +KK                 WW+G+
Sbjct:   118 THDTYKKDGEEGDSKRASRGN---WWEGS 143

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504955928 AT2G39855 "AT2G39855" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 47/124 (37%), Positives = 64/124 (51%)

Query:     1 MDGKREMS---SSFSFTTD-LFGTKKSPPPSS--TGIFASILSPPSTAMGRNSSNSEILG 54
             MD K+ +S   SS S + D +FG + S   SS  TG+F SI  PPS     N ++    G
Sbjct:     1 MDKKKSVSGSSSSSSSSLDHIFGPRVSHSYSSSTTGLFKSIFPPPSAVTQGNLTSRN--G 58

Query:    55 SWQEQPSGNQAWNTKQGTPALHTESASCNIPNKDKSYIFKEERAEPCHLSSSLYYGGQDI 114
             + + QP+  +       TP    E +     NK++     EE   PC+LSSS+YYGGQD 
Sbjct:    59 AAKYQPTNFE-------TPNERGERSK----NKERKSYQSEETQPPCNLSSSIYYGGQDN 107

Query:   115 YSHS 118
             YS S
Sbjct:   108 YSSS 111

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2153286 AT5G59080 "AT5G59080" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 44/140 (31%), Positives = 61/140 (43%)

Query:    19 GTKKSPPPSSTG-IFASI-LSPPSTAMGRNSSNSEILGSWQEQPSGNQAWNTKQGTPALH 76
             G+  S   S T  +F S   SPPS++ G  S+    +     + S     N+K G+ A  
Sbjct:     8 GSSSSTSSSFTAELFGSKDPSPPSSSSGIFST----MFPHPSKGSARDGSNSKHGSQAQR 63

Query:    77 TESASCNIPNKDKSYIFKEERAEPCHLSSSLYYGGQDIYSHSLDTRT--PASYPLFKKXX 134
              ES +            +E+R EPCHLSSSLYYGGQD+Y+ S   +T  P      +   
Sbjct:    64 RESLNA-----------QEDRVEPCHLSSSLYYGGQDVYARSTTNQTYPPVKNDRRRSGE 112

Query:   135 XXXXXXXXXXXXXXXWWQGT 154
                            WWQG+
Sbjct:   113 DDANGQNPQDVSRGNWWQGS 132

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2102727 AT3G46880 "AT3G46880" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 30/89 (33%), Positives = 49/89 (55%)

Query:    43 MGRNSSNS---EILGSWQEQPSGNQAWNTKQGTPALHTESASCNIPNKDKSYIFKEERAE 99
             +G +SS+S   ++ G   ++PS +  +N+    P   ++  + NI +     + + + A 
Sbjct:     7 VGSSSSSSFTAQLFGP--KEPSSSANFNSI--FPP--SKGTARNILSSKHGSLEQRKEAG 60

Query:   100 PCHLSSSLYYGGQDIYSHSLDTRTPASYP 128
              C+LSSSLYYGGQD+YSH     T   YP
Sbjct:    61 TCNLSSSLYYGGQDVYSHPTHNHT---YP 86


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.125   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      156       139   0.00091  102 3  11 23  0.39    32
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  571 (61 KB)
  Total size of DFA:  150 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.62u 0.12s 16.74t   Elapsed:  00:00:00
  Total cpu time:  16.62u 0.12s 16.74t   Elapsed:  00:00:00
  Start:  Thu May  9 16:39:11 2013   End:  Thu May  9 16:39:11 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0001112401 hypothetical protein (162 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00