Citrus Sinensis ID: 031631

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MSTSASLSVTAGMPISTQHGSAGRGRAIVLSLPSNHTLPQGLGLVSAHSNLKGRRGSFKTAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWIT
Secondary Structure (PSIPRED)
cccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccEEEEcccHHccccHHHHHHcccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccEEEEEEEcHHHcccccccHHHHHHHHHHHHHHccccccEEEEccHHHHHcHHHHHHHccccEEEEEEccccccc
Coil and Loop (DISEMBL)
mstsaslsvtagmpistqhgsagrGRAIVLslpsnhtlpqglglvsahsnlkgrrgsfKTAVASvdsnqissssvppekeanKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIepkfldkfpnitkrlrrpavalvstngpwit
Flexible Loop (DISEMBL)
mstsaslsvtagmpistqhgsaGRGRAIVLSLPSNHTLPQGLGLVSAHSNLKGRRGSFKTavasvdsnqissssvppekeaNKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDkfpnitkrlrrpavalvstngpwit
Low Complexity Region (SEG)
MSTSASLSVTAGMPISTQHGSAGRGRAIVLSLPSNHTLPQGLGLVSAHSNLKGRRGSFKTAvasvdsnqissssvPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWIT
Disordered region (IsUnstruct)
**********************************************************************************KYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVST******
Disordered Region (DISOPRED)
****AS***TA**********************************************************************NKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWIT
Disordered Region (DISEMBL)
*********TAGMPISTQHGSAGRGRAIVLSLPSNHTLPQGLGLVSAHSNLKGRRGSFKTAVAS*************EKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWIT
Disordered Region (DISPRO)
****ASLSVTAGMPIST**********I*LSLPSNHTLPQGLGLVSAH******RGSFKTAVASVDS***SSSSVP**KEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWIT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTSASLSVTAGMPISTQHGSAGRGRAIVLSLPSNHTLPQGLGLVSAHSNLKGRRGSFKTAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
P51204	108	Uncharacterized protein y	N/A	no	0.455	0.657	0.418	6e-07
Q1XDT3	111	Uncharacterized protein y	N/A	no	0.455	0.639	0.391	6e-05
P72777	133	Ycf54-like protein OS=Syn	N/A	no	0.461	0.541	0.453	0.0001

>sp|P51204|YCF54_PORPU Uncharacterized protein ycf54 OS=Porphyra purpurea GN=ycf54 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 84  YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRP 143
           YYF +A+  F+L EE   +E+  ER+  Y   +KE DFWL+  PKFL+K   I  +   P
Sbjct: 4   YYFALASQNFLLSEEP-LEEVFRERINYYQSNNKEIDFWLIPNPKFLNKPAMIKFKNLVP 62

Query: 144 --AVALVSTNGPWI 155
             A+A++STN  +I
Sbjct: 63  NEAIAIISTNSIFI 76

Porphyra purpurea (taxid: 2787)

>sp|Q1XDT3|YCF54_PORYE Uncharacterized protein ycf54 OS=Porphyra yezoensis GN=ycf54 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 84  YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRP 143
           YYF +A+  F+L  +E  +E+  ER+  Y   +K  DFWL+  P FL+K   I+ +   P
Sbjct: 4   YYFALASQNFLL-VQEPLEEVFRERVNYYQSNNKAIDFWLIPNPSFLEKPEMISFKNLVP 62

Query: 144 --AVALVSTNGPWI 155
             AVA++STN  +I
Sbjct: 63  KDAVAIISTNPIFI 76

Porphyra yezoensis (taxid: 2788)

>sp|P72777|YC54L_SYNY3 Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1780 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 3/75 (4%)

Query: 84  YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRP 143
           YY+ +A+ KF+L+EE   +E+L ER R+YGE++KE DFW VI+P FL+       + + P
Sbjct: 31  YYYALASQKFLLEEEPF-EEVLKERRRDYGEKNKEIDFWQVIQPAFLNAPELAEAKAKAP 89

Query: 144 A--VALVSTNGPWIT 156
              VA+VSTN  +I 
Sbjct: 90  EKNVAIVSTNKSFIV 104

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
224127029	158	predicted protein [Populus trichocarpa]	0.705	0.696	0.807	9e-47
255570865	217	conserved hypothetical protein [Ricinus	0.929	0.668	0.626	1e-43
147818338	226	hypothetical protein VITISV_031633 [Viti	0.839	0.579	0.708	1e-43
356569974	234	PREDICTED: uncharacterized protein LOC10	0.788	0.525	0.681	2e-42
356539730	234	PREDICTED: uncharacterized protein LOC10	0.858	0.572	0.638	5e-42
255638297	234	unknown [Glycine max]	0.858	0.572	0.638	5e-42
297745731	178	unnamed protein product [Vitis vinifera]	0.647	0.567	0.834	7e-42
255646097	187	unknown [Glycine max]	0.634	0.529	0.818	2e-41
388500648	236	unknown [Lotus japonicus]	0.807	0.533	0.671	2e-40
388498726	216	unknown [Medicago truncatula]	0.762	0.550	0.663	2e-38

>gi|224127029|ref|XP_002319989.1| predicted protein [Populus trichocarpa] gi|222858365|gb|EEE95912.1| predicted protein [Populus trichocarpa]

 Score =  191 bits (485), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 92/114 (80%), Positives = 103/114 (90%), Gaps = 4/114 (3%)

Query: 44  LVSAHSNLKGRRGSFKTAVASVDSNQISSSSVPPEK-EANKYYFVVANAKFMLDEEEHFQ 102
           L+SA +N+     SFKTAVA+VDSN ++SS  PP+K EANKYYFVVANAKFMLDEEEHF+
Sbjct: 48  LLSATTNISS---SFKTAVAAVDSNDLTSSPTPPDKQEANKYYFVVANAKFMLDEEEHFK 104

Query: 103 ELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWIT 156
           ELLFERLRNYGER+KEQDFWLVIEPKFLDKFPNITKRL+RPAVALVSTNG W+T
Sbjct: 105 ELLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWMT 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570865|ref|XP_002526384.1| conserved hypothetical protein [Ricinus communis] gi|223534246|gb|EEF35960.1| conserved hypothetical protein [Ricinus communis]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 99/158 (62%), Positives = 116/158 (73%), Gaps = 13/158 (8%)

Query: 6   SLSVTAGMPISTQHGSAGRGRAIVLSLPSNHTLPQGLGLVSA----HSNLKGRR-GSFKT 60
           SL+V + + ++         + +V  LPS H      GL  +    H +   R   SFKT
Sbjct: 3   SLAVGSSIAMAKVSTHCSYNKTLV-QLPSTH-----FGLKESQPPSHLSFPTRPIASFKT 56

Query: 61  AVASVDSNQISSSSV-PPEKE-ANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKE 118
           AVA++DSN +SSSS  PP+KE  NKY+FVVANAKFMLDEEEHFQE LFERLR YGER+KE
Sbjct: 57  AVAAIDSNDLSSSSPNPPDKEQPNKYFFVVANAKFMLDEEEHFQEQLFERLRYYGERNKE 116

Query: 119 QDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWIT 156
           QDFWLVIEPKFLDKFPNIT+RL+RPAVALVSTNGPWIT
Sbjct: 117 QDFWLVIEPKFLDKFPNITRRLKRPAVALVSTNGPWIT 154

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818338|emb|CAN75840.1| hypothetical protein VITISV_031633 [Vitis vinifera]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/134 (70%), Positives = 104/134 (77%), Gaps = 3/134 (2%)

Query: 26  RAIVLSLPSNHTLPQGLGLVSAHSNLKGRRG-SFKTAVASVDSNQISSSSVP--PEKEAN 82
           R +  S PS    P    L  + S     RG SFKTAVAS++S+Q+SSS      E+ + 
Sbjct: 30  RFLRPSFPSRFIGPNASPLAPSKSYTTPTRGASFKTAVASIESDQLSSSDPANMQEQGSG 89

Query: 83  KYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRR 142
           KYYFVVANAKFMLDEEEHF+ELLFERLR YGERSKEQDFWLVIEPKFLDKFPNITKRLRR
Sbjct: 90  KYYFVVANAKFMLDEEEHFKELLFERLRYYGERSKEQDFWLVIEPKFLDKFPNITKRLRR 149

Query: 143 PAVALVSTNGPWIT 156
           PAVALVSTNGPWIT
Sbjct: 150 PAVALVSTNGPWIT 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569974|ref|XP_003553168.1| PREDICTED: uncharacterized protein LOC100807863 [Glycine max]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/132 (68%), Positives = 103/132 (78%), Gaps = 9/132 (6%)

Query: 34  SNHTLPQGLGLVSAHSNLKGRRGSFK---------TAVASVDSNQISSSSVPPEKEANKY 84
           SN T P  + LVS+         SFK         TAVASVDS++++SS  P + EA+KY
Sbjct: 40  SNRTHPLPMSLVSSTDQSFSFLSSFKEPTHARPFTTAVASVDSDKLNSSDPPTKNEASKY 99

Query: 85  YFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPA 144
           YF+VANAKFMLDEEEHFQE LFERLR +GER++EQDFWLVIEPKFLDKFPNITKRL+RPA
Sbjct: 100 YFLVANAKFMLDEEEHFQEQLFERLRLFGERNQEQDFWLVIEPKFLDKFPNITKRLKRPA 159

Query: 145 VALVSTNGPWIT 156
           VALVSTNGPWIT
Sbjct: 160 VALVSTNGPWIT 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539730|ref|XP_003538347.1| PREDICTED: uncharacterized protein LOC100778483 [Glycine max]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 90/141 (63%), Positives = 106/141 (75%), Gaps = 7/141 (4%)

Query: 18  QHGSAGRGRAIVLSL--PSNHTLPQGLGLVSAHSNLKGRRGSFKTAVASVDSNQISSSSV 75
           +H  + R  ++ +SL  P+N    Q    +S+       R  F TAVASVDS+Q+ SS  
Sbjct: 36  RHSVSNRTHSLPMSLVSPTN----QSFTFLSSFKEPTHAR-PFTTAVASVDSDQLDSSDP 90

Query: 76  PPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPN 135
           P + EA KYYF+VANAKFMLDEEEHFQE LFERLR +GER++EQDFWLVIEPKFLDKF N
Sbjct: 91  PTKNEATKYYFLVANAKFMLDEEEHFQEQLFERLRLFGERNQEQDFWLVIEPKFLDKFSN 150

Query: 136 ITKRLRRPAVALVSTNGPWIT 156
           ITKRL+RPAVALVSTNGPWIT
Sbjct: 151 ITKRLKRPAVALVSTNGPWIT 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638297|gb|ACU19461.1| unknown [Glycine max]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 90/141 (63%), Positives = 106/141 (75%), Gaps = 7/141 (4%)

Query: 18  QHGSAGRGRAIVLSL--PSNHTLPQGLGLVSAHSNLKGRRGSFKTAVASVDSNQISSSSV 75
           +H  + R  ++ +SL  P+N    Q    +S+       R  F TAVASVDS+Q+ SS  
Sbjct: 36  RHSVSNRTHSLPMSLVSPTN----QSFTFLSSFKEPTHAR-PFTTAVASVDSDQLDSSDP 90

Query: 76  PPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPN 135
           P + EA KYYF+VANAKFMLDEEEHFQE LFERLR +GER++EQDFWLVIEPKFLDKF N
Sbjct: 91  PTKSEATKYYFLVANAKFMLDEEEHFQEQLFERLRLFGERNQEQDFWLVIEPKFLDKFSN 150

Query: 136 ITKRLRRPAVALVSTNGPWIT 156
           ITKRL+RPAVALVSTNGPWIT
Sbjct: 151 ITKRLKRPAVALVSTNGPWIT 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745731|emb|CBI15787.3| unnamed protein product [Vitis vinifera]

 Score =  175 bits (443), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 86/103 (83%), Positives = 93/103 (90%), Gaps = 2/103 (1%)

Query: 56  GSFKTAVASVDSNQISSSSVP--PEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYG 113
            SFKTAVAS++S+Q+SSS      E+ + KYYFVVANAKFMLDEEEHF+ELLFERLR YG
Sbjct: 13  ASFKTAVASIESDQLSSSDPANMQEQGSGKYYFVVANAKFMLDEEEHFKELLFERLRYYG 72

Query: 114 ERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWIT 156
           ERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWIT
Sbjct: 73  ERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWIT 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646097|gb|ACU23535.1| unknown [Glycine max]

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/99 (81%), Positives = 92/99 (92%)

Query: 58  FKTAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSK 117
           F TAVASVDS++++SS  P + EA+KYYF+VANAKFMLDEEEHFQE LFERLR +GER++
Sbjct: 26  FTTAVASVDSDKLNSSDPPTKNEASKYYFLVANAKFMLDEEEHFQEQLFERLRLFGERNQ 85

Query: 118 EQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWIT 156
           EQDFWLVIEPKFLDKFPNITKRL+RPAVALVSTNGPWIT
Sbjct: 86  EQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGPWIT 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500648|gb|AFK38390.1| unknown [Lotus japonicus]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 86/128 (67%), Positives = 97/128 (75%), Gaps = 2/128 (1%)

Query: 31  SLPSNHTLP--QGLGLVSAHSNLKGRRGSFKTAVASVDSNQISSSSVPPEKEANKYYFVV 88
           SLP N   P  Q + L S+          F TAVA+VDS+ +SSS    +KEANKYYFV+
Sbjct: 48  SLPMNLVSPTNQNVTLFSSFKEPTPAAAPFTTAVAAVDSDNLSSSDPATKKEANKYYFVI 107

Query: 89  ANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALV 148
           ANAKFMLDEEEHF+E+LFERLR + ER  EQDFWLVIEPKFLD+FP ITKRL RPAVALV
Sbjct: 108 ANAKFMLDEEEHFREVLFERLRLFEERKVEQDFWLVIEPKFLDRFPGITKRLGRPAVALV 167

Query: 149 STNGPWIT 156
           STNGPWIT
Sbjct: 168 STNGPWIT 175

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498726|gb|AFK37429.1| unknown [Medicago truncatula]

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/122 (66%), Positives = 94/122 (77%), Gaps = 3/122 (2%)

Query: 36  HTLPQGLGLVSAHSNLKGRRGSFKTAVASVDSNQISSSSVPPEK-EANKYYFVVANAKFM 94
           H+LP  + LVS  +    +   F TAV+SV S+ + SS  P  K E  KYYF+VANAKFM
Sbjct: 34  HSLP--MSLVSPTNQNFKKHKPFITAVSSVQSDNVGSSDAPATKSEFTKYYFIVANAKFM 91

Query: 95  LDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPW 154
           LD+EEHFQE LFER R YGER+KEQD+WLVIEPKFLD FP+ TK+LRRPAVALVSTNGPW
Sbjct: 92  LDDEEHFQEQLFERQRYYGERNKEQDYWLVIEPKFLDSFPDFTKKLRRPAVALVSTNGPW 151

Query: 155 IT 156
           IT
Sbjct: 152 IT 153

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
TAIR|locus:2161218	211	EMB3143 "AT5G58250" [Arabidops	0.891	0.658	0.512	1.4e-30

TAIR|locus:2161218 EMB3143 "AT5G58250" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 80/156 (51%), Positives = 95/156 (60%)

Query:     8 SVTAGMPISTQHGSAG-RGRAIVLS--LPSN----HTLPQGLGLVSAHSNLKGRRGSFKT 60
             SVT  + ++    +A  R +  ++S   P      H     L L S+H +      SFKT
Sbjct:     3 SVTGALTVAVPPTAAACRTKPFLISSSFPKQTKKLHLSSPSLSLPSSHFS-----SSFKT 57

Query:    61 AXXXXXXXXXXXXXXPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQD 120
             A                + E+ KY+F+VANAKFMLDEEEHFQE LFERLR +GER   QD
Sbjct:    58 AATSIEQQSSVN-----KGESTKYHFLVANAKFMLDEEEHFQEQLFERLRYFGERELVQD 112

Query:   121 FWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWIT 156
             FWLVIEPKFLD FP IT+RLRRPAVALVSTNG WIT
Sbjct:   113 FWLVIEPKFLDNFPKITQRLRRPAVALVSTNGTWIT 148


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      156       142   0.00091  102 3  11 22  0.46    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  562 (60 KB)
  Total size of DFA:  129 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.90u 0.11s 14.01t   Elapsed:  00:00:01
  Total cpu time:  13.90u 0.11s 14.01t   Elapsed:  00:00:01
  Start:  Mon May 20 23:10:40 2013   End:  Mon May 20 23:10:41 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009579 "thylakoid" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_XIII0363	hypothetical protein (158 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XIII.1619.1	hypothetical protein (398 aa)			•	•					0.581
	gw1.VII.3851.1	hypothetical protein (202 aa)			•	•					0.558
	estExt_Genewise1_v1.C_LG_X2323	hypothetical protein (243 aa)			•	•					0.555
	gw1.152.106.1	hypothetical protein (199 aa)			•	•					0.550
	gw1.XIII.355.1	hypothetical protein (158 aa)			•	•					0.550
	estExt_fgenesh4_pg.C_LG_X1887	hypothetical protein (235 aa)			•	•					0.547
	eugene3.00130190	SubName- Full=Putative uncharacterized protein; (339 aa)			•	•					0.545
	eugene3.00160848	hypothetical protein (215 aa)			•	•					0.544
	gw1.XIV.2732.1	hypothetical protein (109 aa)			•	•					0.538
	gw1.XII.287.1	hypothetical protein (117 aa)			•	•					0.529

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	156
pfam10674	92	pfam10674, Ycf54, Protein of unknown function (DUF	3e-35

>gnl|CDD|204539 pfam10674, Ycf54, Protein of unknown function (DUF2488)

 Score =  117 bits (296), Expect = 3e-35
 Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 3/77 (3%)

Query: 82  NKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDK--FPNITKR 139
             YYFV A+ KF+  EEE  +E+L ER R+Y E+ KE DFWLV +P FL+      +  +
Sbjct: 1   TTYYFVAASKKFLT-EEEPLEEVLRERRRHYKEKGKEIDFWLVPQPAFLEAPELAELKAK 59

Query: 140 LRRPAVALVSTNGPWIT 156
           L +PA A+VST+  +IT
Sbjct: 60  LPQPAAAVVSTDKQFIT 76

This protein is conserved in the green lineage and located in the chloroplast. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
PF10674	93	Ycf54: Protein of unknown function (DUF2488); Inte	100.0

>PF10674 Ycf54: Protein of unknown function (DUF2488); InterPro: IPR019616 This entry represents proteins annotated as Ycf54

Probab=100.00  E-value=1.2e-43  Score=263.26  Aligned_cols=74  Identities=58%  Similarity=1.007  Sum_probs=64.9

Q ss_pred             ceEEEEeecccccCcccchhHHHHHHHHHhhhccCceecEEEeeCccccc--cChhhHhhcCCCcEEEEecCCCCCC
Q 031631           82 NKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLD--KFPNITKRLRRPAVALVSTNGPWIT  156 (156)
Q Consensus        82 ttYYfvvAS~kFLl~eEEplEEVLrER~R~Y~E~~KeiDFWLV~~PaFLe--efp~ik~klpqPaaAIVSTd~~FIT  156 (156)
                      |||||+|||++||+ +|||||||||||+|||+|+||+||||||++|+|||  +|+++++|||+||+||||||++|||
T Consensus         1 ttYyf~~As~~Fl~-~eEpleEvLrER~r~y~e~~k~iDFWlv~~PaFLe~p~~~~~~~k~~~p~~AiVSTd~~fIt   76 (93)
T PF10674_consen    1 TTYYFVLASAKFLL-EEEPLEEVLRERTRHYKEKNKEIDFWLVKEPAFLEAPEFPEIKKKLPQPAAAIVSTDKQFIT   76 (93)
T ss_dssp             EEEEEEEEEHHHHH-CTS-HHHHHHHHHHHHHHCT----EEEEESBGGGGSGGGHHHHHHS-SSEEEEEES-HHHHH
T ss_pred             CeEEEEEechhhhc-cCccHHHHHHHHHHHHHhcCCCccEEEecChhhcCccccHHHHHhCCCCcEEEEecChHHHH
Confidence            69999999999998 77999999999999999999999999999999999  5999999999999999999999996

It is found encoded in the chloroplast genomes of algae, it is also found in plants and in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.; PDB: 3JSR_A 3HZE_D.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	156
3jsr_A	119	X-ray Structure Of All0216 Protein From Nostoc Sp.		5e-13
3hze_A	114	Crystal Structure Of Ycf54 Protein From Thermosynec		2e-11

>pdb|3JSR|A Chain A, X-ray Structure Of All0216 Protein From Nostoc Sp. Pcc 7120 At The Resolution 1.8a. Northeast Structural Genomics Consortium Target Nsr236 Length = 119

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 84  YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLD--KFPNITKRLR 141
           YY+V+A+ +F+L +EE  +E+L ER R+Y E+ KE DFWLV +P FL+  +F +I  +  
Sbjct: 6   YYYVLASRRFLL-QEEPIEEVLKERTRHYHEQEKEIDFWLVPQPAFLEAPEFADIKAKCP 64
Query: 142 RPAVALVSTNGPWIT 156
           +PA A++STN  +IT
Sbjct: 65  QPAAAIISTNSQFIT 79

>pdb|3HZE|A Chain A, Crystal Structure Of Ycf54 Protein From Thermosynechococcus Elongatus, Northeast Structural Genomics Consortium Target Ter59 Length = 114

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 84  YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLD--KFPNITKRLR 141
           YY+++A+ KF L EEE  +E+  ER R+Y E+ KE DFWLV EP FL+  +F     R  
Sbjct: 4   YYYILASKKF-LTEEEPLEEVFRERQRHYREQGKEIDFWLVPEPAFLEQPQFAEQKARCP 62
Query: 142 RPAVALVSTNGPWI 155
           +PA A++STN  +I
Sbjct: 63  QPAAAIISTNQQFI 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
3jsr_A	119	ALL0216 protein; structural genomics, PSI-2, prote	7e-32

>3jsr_A ALL0216 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, NSR236, unknown funct; 1.80A {Nostoc SP} PDB: 3hze_A Length = 119

 Score =  109 bits (273), Expect = 7e-32
 Identities = 35/76 (46%), Positives = 54/76 (71%), Gaps = 3/76 (3%)

Query: 83  KYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLD--KFPNITKRL 140
            YY+V+A+ +F+L +EE  +E+L ER R+Y E+ KE DFWLV +P FL+  +F +I  + 
Sbjct: 5   TYYYVLASRRFLL-QEEPIEEVLKERTRHYHEQEKEIDFWLVPQPAFLEAPEFADIKAKC 63

Query: 141 RRPAVALVSTNGPWIT 156
            +PA A++STN  +IT
Sbjct: 64  PQPAAAIISTNSQFIT 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
3jsr_A	119	ALL0216 protein; structural genomics, PSI-2, prote	100.0

>3jsr_A ALL0216 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, NSR236, unknown funct; 1.80A {Nostoc SP} PDB: 3hze_A

Probab=100.00  E-value=2.1e-44  Score=275.72  Aligned_cols=76  Identities=46%  Similarity=0.873  Sum_probs=74.4

Q ss_pred             ccceEEEEeecccccCcccchhHHHHHHHHHhhhccCceecEEEeeCccccc--cChhhHhhcCCCcEEEEecCCCCCC
Q 031631           80 EANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLD--KFPNITKRLRRPAVALVSTNGPWIT  156 (156)
Q Consensus        80 ~~ttYYfvvAS~kFLl~eEEplEEVLrER~R~Y~E~~KeiDFWLV~~PaFLe--efp~ik~klpqPaaAIVSTd~~FIT  156 (156)
                      +|+||||||||++||| +|||||||||||+|||+|+||+||||||+||+|||  +|++|++|||+|||||||||++|||
T Consensus         2 km~tYyfv~AS~~Fll-eeEpleEvLrER~r~Y~e~~KeiDFWlV~~PaFLeap~~~~i~~kl~~P~~AIVSTd~~fIt   79 (119)
T 3jsr_A            2 KMQTYYYVLASRRFLL-QEEPIEEVLKERTRHYHEQEKEIDFWLVPQPAFLEAPEFADIKAKCPQPAAAIISTNSQFIT   79 (119)
T ss_dssp             CCEEEEEEEEEHHHHH-TTSCCHHHHHHHHHHHHHTTCCCCEEEEESBGGGGSGGGHHHHHHSCSSEEEEEESCHHHHH
T ss_pred             CcceEEEEEechhhhc-cCccHHHHHHHHHHHHHhcCCCccEEEecChhhcCchhhHHHHHhCCCCcEEEEecChHHHH
Confidence            6999999999999999 89999999999999999999999999999999999  6999999999999999999999996

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00