Citrus Sinensis ID: 031636

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MTGVTKESETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPSKSATVQDLQKAFVKVRRKNNSKKPVEKSA
Secondary Structure (PSIPRED)
ccccccHHHHHHccHHHHHHHHHHHHccccccEEEEEcccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEcccEEEEEccccHHHcccHHHcccccccccccHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHccHHHHHHHHHHHHHHHccccEEEEEccccccHEEEEEEEEcccHHHHHHHHHHHHHHHHHHccccEEcccccccccccccccEEEEEcccEEEEEEcHHHHHHHHHHHHHcccccccccHHcHHHcEEEEcccccccccccccc
Coil and Loop (DISEMBL)
mtgvtkesetlarkrpsmtsvvnptfdlkaddvkvipvgekcdwtdYMVIATGRSTWHVKNIAQAIIYKAKQRQrevgakqmmlpsvqgqdtgkwviidSGKVIVHALDENARAYYNLedlwtsepsksatVQDLQKAFVKVRrknnskkpveksa
Flexible Loop (DISEMBL)
mtgvtkesetlarkrpsmtsvvnptfdlkaddvkvipVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQmmlpsvqgqdtgkwVIIDSGKVIVHALDENARAYYNLEDLWtsepsksatvqDLQKAFVkvrrknnskkpveksa
Low Complexity Region (SEG)
MTGVTKESETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPSKSATVQDLQKAFVKVRRKNNSKKPVEKSA
Disordered region (IsUnstruct)
*********************VNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQR**********L*SVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWT*********************************
Disordered Region (DISOPRED)
******************TSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREV***QM**PSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEP******************************
Disordered Region (DISEMBL)
******************TSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPSKSATVQDLQKAFVKV**************
Disordered Region (DISPRO)
*****KE***LARKRPSMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPSKSATVQDLQKAFVKVRR************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGVTKESETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPSKSATVQDLQKAFVKVRRKNNSKKPVEKSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
Q9CAF9	184	Protein Iojap-related, mi	yes	no	0.935	0.793	0.544	6e-40
P0AAT8	105	Ribosomal silencing facto	yes	no	0.608	0.904	0.375	1e-12
P0AAT6	105	Ribosomal silencing facto	N/A	no	0.608	0.904	0.375	1e-12
P0AAT7	105	Ribosomal silencing facto	yes	no	0.608	0.904	0.375	1e-12
Q5NLX3	133	Ribosomal silencing facto	yes	no	0.570	0.669	0.333	1e-10
Q96EH3	234	Mitochondrial assembly of	yes	no	0.608	0.405	0.318	9e-10
Q9KD89	117	Ribosomal silencing facto	yes	no	0.634	0.846	0.339	3e-09
Q97P97	117	Ribosomal silencing facto	yes	no	0.685	0.914	0.307	5e-09
P44471	102	Ribosomal silencing facto	yes	no	0.634	0.970	0.317	1e-08
Q9CWV0	228	Mitochondrial assembly of	yes	no	0.679	0.464	0.282	3e-08

>sp|Q9CAF9|IOJAM_ARATH Protein Iojap-related, mitochondrial OS=Arabidopsis thaliana GN=At1g67620 PE=2 SV=1

 Score =  162 bits (411), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 111/156 (71%), Gaps = 10/156 (6%)

Query: 3   GVTKESETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNI 62
           G++  SE L     ++  V     D+KAD+V VIP    C W D+ VIATGRS WH++NI
Sbjct: 37  GISNVSEIL-----TLPEVEKILADVKADNVTVIPTHNHCFWADFTVIATGRSDWHLRNI 91

Query: 63  AQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLW 122
           AQA++Y+AKQ+Q+  GAK +MLPSVQG ++ KW++ID GK +VHALDE AR Y+NLE LW
Sbjct: 92  AQALVYRAKQKQK--GAKHVMLPSVQGYNS-KWIVIDYGKFVVHALDEKARGYFNLESLW 148

Query: 123 TSEPSKSATV-QDLQKAFVKVRRKNNSK-KPVEKSA 156
           ++E S + T  QDLQ  FVKVR KNNSK KP + S+
Sbjct: 149 SAESSGTDTSDQDLQNVFVKVRPKNNSKRKPAKVSS 184

May be a ribosome silencing factor involved in organelle biogenesis and required for germination.
Arabidopsis thaliana (taxid: 3702)

>sp|P0AAT8|IOJAP_SHIFL Ribosomal silencing factor RsfS OS=Shigella flexneri GN=rsfS PE=3 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 9/104 (8%)

Query: 21  VVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAK 80
           V++   DLK  D+  + V  K   TD M+I TG S+ HV +IA  ++    Q  R  G  
Sbjct: 10  VIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAG-- 63

Query: 81  QMMLP-SVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWT 123
             +LP  V+G+++  W+++D G VIVH + E +R  Y LE LW+
Sbjct: 64  --LLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105

Shigella flexneri (taxid: 623)

>sp|P0AAT6|IOJAP_ECOLI Ribosomal silencing factor RsfS OS=Escherichia coli (strain K12) GN=rsfS PE=1 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 9/104 (8%)

Query: 21  VVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAK 80
           V++   DLK  D+  + V  K   TD M+I TG S+ HV +IA  ++    Q  R  G  
Sbjct: 10  VIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAG-- 63

Query: 81  QMMLP-SVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWT 123
             +LP  V+G+++  W+++D G VIVH + E +R  Y LE LW+
Sbjct: 64  --LLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AAT7|IOJAP_ECOL6 Ribosomal silencing factor RsfS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsfS PE=3 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 9/104 (8%)

Query: 21  VVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAK 80
           V++   DLK  D+  + V  K   TD M+I TG S+ HV +IA  ++    Q  R  G  
Sbjct: 10  VIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAG-- 63

Query: 81  QMMLP-SVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWT 123
             +LP  V+G+++  W+++D G VIVH + E +R  Y LE LW+
Sbjct: 64  --LLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|Q5NLX3|IOJAP_ZYMMO Ribosomal silencing factor RsfS OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=rsfS PE=1 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 7/96 (7%)

Query: 27  DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
           D +A ++  IP+  K    DYMVIA+GRS+  V  +AQ +  + K       A    +  
Sbjct: 29  DDQALEIATIPLAGKSSIADYMVIASGRSSRQVTAMAQKLADRIK-------AATGYVSK 81

Query: 87  VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLW 122
           ++G     WV++D+G +I+H      R++YNLE +W
Sbjct: 82  IEGLPAADWVLLDAGDIIIHLFRPEVRSFYNLERMW 117

Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.

Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) (taxid: 264203)

>sp|Q96EH3|MASU1_HUMAN Mitochondrial assembly of ribosomal large subunit protein 1 OS=Homo sapiens GN=MALSU1 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 18/113 (15%)

Query: 23  NPTFDL----------KADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAII--YKA 70
            P FD+           A D+ VI V  +  +TDY VI +G ST H+  +A  ++  YK 
Sbjct: 89  GPKFDIDMMVSLLRQENARDICVIQVPPEMRYTDYFVIVSGTSTRHLHAMAFYVVKMYKH 148

Query: 71  KQRQREVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWT 123
            + +R+   K      ++G+DT  W+ +D G +++H +    R  Y LE LWT
Sbjct: 149 LKCKRDPHVK------IEGKDTDDWLCVDFGSMVIHLMLPETREIYELEKLWT 195

Participates in the assembly and/or regulation of the stability of the large subunit of the mitochondrial ribosome.

Homo sapiens (taxid: 9606)

>sp|Q9KD89|IOJAP_BACHD Ribosomal silencing factor RsfS OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=rsfS PE=1 SV=1

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 7/106 (6%)

Query: 22  VNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ 81
           VN   D KA+ V  + +       D+ +I  G S   V    QAI ++ K+  +E G + 
Sbjct: 11  VNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQV----QAIAHELKKVAQEQGIE- 65

Query: 82  MMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPS 127
             +  ++G +  +WV+ID G V+VH   ++ RAYYNLE LW   P+
Sbjct: 66  --IKRLEGYEQARWVLIDLGDVVVHVFHKDERAYYNLEKLWGDAPT 109

Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)

>sp|Q97P97|IOJAP_STRPN Ribosomal silencing factor RsfS OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=rsfS PE=1 SV=1

 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 7/114 (6%)

Query: 14  KRPSMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQR 73
           ++  +  VV    + +A+D+  + V +    TDY+VI +  ++  +  IA  I    +++
Sbjct: 3   EKELLELVVKAADEKRAEDILALDVQDLTSVTDYLVITSSMNSRQLDAIAANI----REK 58

Query: 74  QREVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPS 127
             + G K      V+G   G WV++D G V+VH   E  RA+YNLE LW    S
Sbjct: 59  VAQAGFKG---SHVEGDAAGGWVLLDLGAVVVHIFSEEMRAHYNLEKLWHEANS 109

Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.

Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) (taxid: 170187)

>sp|P44471|IOJAP_HAEIN Ribosomal silencing factor RsfS OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rsfS PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 8/107 (7%)

Query: 17  SMTSVVNPTFD-LKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQR 75
           ++   +  T D LK  D+    V  K   TD M+I TG S+  V  +A  +I + K+   
Sbjct: 2   ALVEFLMETLDGLKGTDIVHFDVRGKSSITDNMIICTGTSSRQVSAMADNLITECKKAGF 61

Query: 76  EVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLW 122
           E   ++       G++T  W+++D G+ IVH +  +AR  Y LE LW
Sbjct: 62  ETFGEE-------GKNTADWIVVDLGQAIVHIMQRDAREMYQLEKLW 101

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

>sp|Q9CWV0|MASU1_MOUSE Mitochondrial assembly of ribosomal large subunit protein 1 OS=Mus musculus GN=Malsu1 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 18/124 (14%)

Query: 12  ARKRPSMTSVVNPTFDL----------KADDVKVIPVGEKCDWTDYMVIATGRSTWHVKN 61
           AR +P     +   FD+           A D+ VI V  +  +TDY VI +G ST H+  
Sbjct: 72  ARLQPGPADHIGAKFDIDMLVSLLRQENARDICVIQVPPEMRYTDYFVIGSGTSTRHLHA 131

Query: 62  IAQAII--YKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLE 119
           +   ++  YK  + + +   K      ++G+D   W+ +D G +++H +    R  Y LE
Sbjct: 132 MVHYLVKMYKHLKCRSDPYVK------IEGKDADDWLCVDFGSMVIHLMLPETRETYELE 185

Query: 120 DLWT 123
            LWT
Sbjct: 186 KLWT 189

Participates in the assembly and/or regulation of the stability of the large subunit of the mitochondrial ribosome.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
255547874	200	conserved hypothetical protein [Ricinus	0.820	0.64	0.681	2e-49
351722821	177	uncharacterized protein LOC100500659 [Gl	0.820	0.723	0.723	1e-48
351722498	177	uncharacterized protein LOC100500386 [Gl	0.820	0.723	0.723	6e-48
357463073	175	hypothetical protein MTR_3g085720 [Medic	0.820	0.731	0.692	2e-47
224101567	186	predicted protein [Populus trichocarpa]	0.820	0.688	0.687	1e-46
449530187	186	PREDICTED: protein Iojap-related, mitoch	0.807	0.677	0.674	7e-46
225425859	186	PREDICTED: uncharacterized protein LOC10	0.801	0.672	0.679	1e-44
388496718	179	unknown [Lotus japonicus]	0.782	0.681	0.677	5e-44
449450592	181	PREDICTED: protein Iojap-related, mitoch	0.685	0.591	0.702	1e-40
294462113	261	unknown [Picea sitchensis]	0.782	0.467	0.595	1e-38

>gi|255547874|ref|XP_002514994.1| conserved hypothetical protein [Ricinus communis] gi|223546045|gb|EEF47548.1| conserved hypothetical protein [Ricinus communis]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/135 (68%), Positives = 114/135 (84%), Gaps = 7/135 (5%)

Query: 27  DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAK-------QRQREVGA 79
           D+KADDVKVIPV ++CDW DYMVIATGRSTWHVKNIAQA+IYKA         +Q++ GA
Sbjct: 64  DVKADDVKVIPVQKQCDWVDYMVIATGRSTWHVKNIAQALIYKAGFALLLSFSKQKQKGA 123

Query: 80  KQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPSKSATVQDLQKAF 139
           ++MMLPSV+GQ+ GKW+++DSGKVIVHALDE ARAYYNLE+LWTS  S+   VQ+L++AF
Sbjct: 124 QRMMLPSVEGQEAGKWIVVDSGKVIVHALDEKARAYYNLENLWTSNTSRKEPVQELEQAF 183

Query: 140 VKVRRKNNSKKPVEK 154
           VK+R KNNSKKP ++
Sbjct: 184 VKIRPKNNSKKPAQR 198

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722821|ref|NP_001237513.1| uncharacterized protein LOC100500659 [Glycine max] gi|255630873|gb|ACU15799.1| unknown [Glycine max]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/130 (72%), Positives = 111/130 (85%), Gaps = 2/130 (1%)

Query: 27  DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
           D+KAD+VKVIPV + CDW D+MV+ATGRSTWHVKNIAQA+IYKAKQ+QR  G ++MMLPS
Sbjct: 50  DVKADNVKVIPVPKHCDWADFMVLATGRSTWHVKNIAQALIYKAKQKQR--GVERMMLPS 107

Query: 87  VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPSKSATVQDLQKAFVKVRRKN 146
           V+GQ  GKW++IDSGKVIVHALDE ARAYYNLE LWT    ++   +DLQKA VKVRRKN
Sbjct: 108 VEGQAGGKWIVIDSGKVIVHALDEKARAYYNLEGLWTPGTIQNEREEDLQKALVKVRRKN 167

Query: 147 NSKKPVEKSA 156
           NSKKP +K+A
Sbjct: 168 NSKKPAQKNA 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722498|ref|NP_001237246.1| uncharacterized protein LOC100500386 [Glycine max] gi|255630200|gb|ACU15455.1| unknown [Glycine max]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 94/130 (72%), Positives = 109/130 (83%), Gaps = 2/130 (1%)

Query: 27  DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
           D KAD VKVIPV + CDW D+MV+ATGRSTWHVKNIAQA+IYKAKQ+QR  G ++MMLPS
Sbjct: 50  DAKADGVKVIPVPKHCDWADFMVLATGRSTWHVKNIAQALIYKAKQKQR--GVERMMLPS 107

Query: 87  VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPSKSATVQDLQKAFVKVRRKN 146
           V+GQ  GKW++IDSGKVIVHALDE ARAYYNLE LWT    ++   +DLQKA VKVRRKN
Sbjct: 108 VEGQAGGKWIVIDSGKVIVHALDEKARAYYNLEGLWTPGGIQNEHDEDLQKALVKVRRKN 167

Query: 147 NSKKPVEKSA 156
           NSKKP +K+A
Sbjct: 168 NSKKPAQKNA 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463073|ref|XP_003601818.1| hypothetical protein MTR_3g085720 [Medicago truncatula] gi|355490866|gb|AES72069.1| hypothetical protein MTR_3g085720 [Medicago truncatula] gi|388500568|gb|AFK38350.1| unknown [Medicago truncatula]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 110/130 (84%), Gaps = 2/130 (1%)

Query: 27  DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
           D++ADDVK+IP  +  DWTD+MV+ATGRS+WHVKNIAQA+IY+AKQ+Q  +G ++MMLPS
Sbjct: 48  DVQADDVKIIPAPKHNDWTDFMVLATGRSSWHVKNIAQALIYQAKQKQ--IGVERMMLPS 105

Query: 87  VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPSKSATVQDLQKAFVKVRRKN 146
           VQGQ+ GKW++IDSGKVIVHALDENARAYYNLE LWT     +  ++DL KA VKVRRKN
Sbjct: 106 VQGQEDGKWIVIDSGKVIVHALDENARAYYNLEGLWTRGTLPNEPIEDLHKALVKVRRKN 165

Query: 147 NSKKPVEKSA 156
           NSKKP +K A
Sbjct: 166 NSKKPAQKKA 175

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101567|ref|XP_002312333.1| predicted protein [Populus trichocarpa] gi|222852153|gb|EEE89700.1| predicted protein [Populus trichocarpa]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/131 (68%), Positives = 110/131 (83%), Gaps = 3/131 (2%)

Query: 27  DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
           D++ADDVKVIP  +  +W DYMVIATGRSTWHVKNIAQA+IYKAKQ+Q+  GA++M LPS
Sbjct: 58  DVRADDVKVIPAKKHAEWADYMVIATGRSTWHVKNIAQALIYKAKQKQK--GAQRMTLPS 115

Query: 87  VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPSKSATVQDLQKAFVKVR-RK 145
           V+GQ+ GKW++IDSGKVIVHALDE ARAYYNLE LWTS+ SK    QDL KAF+K+R ++
Sbjct: 116 VEGQEGGKWIVIDSGKVIVHALDEKARAYYNLESLWTSDASKEEPDQDLDKAFIKIRPKR 175

Query: 146 NNSKKPVEKSA 156
           NNSK+P  + A
Sbjct: 176 NNSKRPANRGA 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530187|ref|XP_004172077.1| PREDICTED: protein Iojap-related, mitochondrial-like [Cucumis sativus]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 87/129 (67%), Positives = 109/129 (84%), Gaps = 3/129 (2%)

Query: 28  LKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSV 87
           +KADDVKVIPV + CDW DYMV ATGRSTWHVKNIAQA+IY+ KQ+Q+  GA+Q++LPSV
Sbjct: 59  VKADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQK--GARQLVLPSV 116

Query: 88  QGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPSKSATVQDLQKAFVKVRRKNN 147
           +GQ+ GKW++IDSGKV+VHALDENAR+YYNLE LW++E     + QDL +A VK+R KNN
Sbjct: 117 EGQEEGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNN 176

Query: 148 S-KKPVEKS 155
           S KKP +K+
Sbjct: 177 SKKKPTQKT 185

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425859|ref|XP_002266055.1| PREDICTED: uncharacterized protein LOC100249470 [Vitis vinifera]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/131 (67%), Positives = 111/131 (84%), Gaps = 6/131 (4%)

Query: 27  DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
           D+KADD++VIPV + CD   +MVIATGRS+WHVKNIAQA+IYKAKQ+Q+  GA++++LPS
Sbjct: 61  DVKADDIRVIPVRQHCD---FMVIATGRSSWHVKNIAQALIYKAKQKQK--GAQRILLPS 115

Query: 87  VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPS-KSATVQDLQKAFVKVRRK 145
           V+GQ+ GKWVIIDSG VIVHALDE ARAYYNLE LWT+E S    + Q+L+ AFVK+RRK
Sbjct: 116 VEGQEGGKWVIIDSGTVIVHALDEKARAYYNLESLWTTETSPNEPSSQELKNAFVKIRRK 175

Query: 146 NNSKKPVEKSA 156
           NNSKK V+ S+
Sbjct: 176 NNSKKSVQTSS 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496718|gb|AFK36425.1| unknown [Lotus japonicus]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 84/124 (67%), Positives = 104/124 (83%), Gaps = 2/124 (1%)

Query: 27  DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
           D+KADDVKV+P  + CDW D+MV+ATGRSTWHV+NIAQA++Y+AKQ+QR  G  + +LPS
Sbjct: 54  DVKADDVKVMPAPKHCDWADFMVLATGRSTWHVRNIAQALVYRAKQKQR--GVVRKILPS 111

Query: 87  VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPSKSATVQDLQKAFVKVRRKN 146
           V+G++ GKW++IDSG+VIVHAL+E ARAYYNLE LWT     S  V+DLQKAFVKVRR N
Sbjct: 112 VEGEEGGKWIVIDSGRVIVHALEEKARAYYNLEGLWTQGTMPSEPVEDLQKAFVKVRRIN 171

Query: 147 NSKK 150
           NSKK
Sbjct: 172 NSKK 175

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450592|ref|XP_004143046.1| PREDICTED: protein Iojap-related, mitochondrial-like [Cucumis sativus]

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/111 (70%), Positives = 96/111 (86%), Gaps = 4/111 (3%)

Query: 28  LKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSV 87
           +KADDVKVIPV + CDW DYMV ATGRSTWHVKNIAQA+IY+ KQ+Q+  GA+Q++LPSV
Sbjct: 59  VKADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQK--GARQLVLPSV 116

Query: 88  QGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSE--PSKSATVQDLQ 136
           +GQ+ GKW++IDSGKV+VHALDENAR+YYNLE LW++E  P  SA V DL+
Sbjct: 117 EGQEEGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQVHDLR 167

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294462113|gb|ADE76609.1| unknown [Picea sitchensis]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/126 (59%), Positives = 101/126 (80%), Gaps = 4/126 (3%)

Query: 27  DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
           D++A+DVK I V ++C+WTDYMV ATGRS WHV+NIAQA++YK KQ+Q+  GA +M+LP 
Sbjct: 135 DVRAEDVKSINVHKQCEWTDYMVFATGRSNWHVRNIAQALLYKVKQKQK--GADRMVLPG 192

Query: 87  VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSE--PSKSATVQDLQKAFVKVRR 144
           ++G++ GKW++ID+G +IVHALDENARAYY+LE LWT E     S  +Q+LQ +  KVRR
Sbjct: 193 IEGREGGKWLVIDTGSIIVHALDENARAYYDLESLWTKERLSKGSNQLQELQNSLKKVRR 252

Query: 145 KNNSKK 150
           K N+KK
Sbjct: 253 KRNNKK 258

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
TAIR|locus:2008560	184	AT1G67620 "AT1G67620" [Arabido	0.935	0.793	0.544	2.6e-38
UNIPROTKB|Q8EHP7	109	SO_1170 "Iojap-like ribosome-a	0.628	0.899	0.4	7.7e-16
TIGR_CMR|SO_1170	109	SO_1170 "iojap domain protein"	0.628	0.899	0.4	7.7e-16
UNIPROTKB|P0AAT6	105	rsfS "ribosomal silencing fact	0.608	0.904	0.375	1e-13
UNIPROTKB|Q5LX03	128	SPO0219 "Iojap-related protein	0.621	0.757	0.375	1.3e-13
TIGR_CMR|SPO_0219	128	SPO_0219 "iojap-related protei	0.621	0.757	0.375	1.3e-13
UNIPROTKB|Q484R0	106	CPS_1717 "Iojap-related protei	0.608	0.896	0.323	1.6e-13
TIGR_CMR|CPS_1717	106	CPS_1717 "iojap-related protei	0.608	0.896	0.323	1.6e-13
UNIPROTKB|Q2GLC3	127	APH_0207 "Iojap-related protei	0.608	0.748	0.355	2.1e-13
TIGR_CMR|APH_0207	127	APH_0207 "iojap-related protei	0.608	0.748	0.355	2.1e-13

TAIR|locus:2008560 AT1G67620 "AT1G67620" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 85/156 (54%), Positives = 112/156 (71%)

Query:     3 GVTKESETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNI 62
             G++  SE L    P +  ++    D+KAD+V VIP    C W D+ VIATGRS WH++NI
Sbjct:    37 GISNVSEILTL--PEVEKILA---DVKADNVTVIPTHNHCFWADFTVIATGRSDWHLRNI 91

Query:    63 AQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLW 122
             AQA++Y+AKQ+Q+  GAK +MLPSVQG ++ KW++ID GK +VHALDE AR Y+NLE LW
Sbjct:    92 AQALVYRAKQKQK--GAKHVMLPSVQGYNS-KWIVIDYGKFVVHALDEKARGYFNLESLW 148

Query:   123 TSEPSKSATV-QDLQKAFVKVRRKNNSK-KPVEKSA 156
             ++E S + T  QDLQ  FVKVR KNNSK KP + S+
Sbjct:   149 SAESSGTDTSDQDLQNVFVKVRPKNNSKRKPAKVSS 184

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|Q8EHP7 SO_1170 "Iojap-like ribosome-associated protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 42/105 (40%), Positives = 64/105 (60%)

Query:    21 VVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAK 80
             VV+   DLKA DV VI V  + + TDYMVI +G S  HVK IA+ ++ +AK      G  
Sbjct:    10 VVDKIDDLKARDVVVIDVSNQSNITDYMVICSGTSKTHVKAIAENLVIEAKA----AGIP 65

Query:    81 QMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSE 125
              +    ++G+D+ +WV++D G VI+H + +  R +Y LE LW+ +
Sbjct:    66 PI---GIEGRDSSEWVLVDMGNVILHVMQDQTRDFYQLEKLWSEK 107

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1170 SO_1170 "iojap domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 42/105 (40%), Positives = 64/105 (60%)

Query:    21 VVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAK 80
             VV+   DLKA DV VI V  + + TDYMVI +G S  HVK IA+ ++ +AK      G  
Sbjct:    10 VVDKIDDLKARDVVVIDVSNQSNITDYMVICSGTSKTHVKAIAENLVIEAKA----AGIP 65

Query:    81 QMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSE 125
              +    ++G+D+ +WV++D G VI+H + +  R +Y LE LW+ +
Sbjct:    66 PI---GIEGRDSSEWVLVDMGNVILHVMQDQTRDFYQLEKLWSEK 107

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|P0AAT6 rsfS "ribosomal silencing factor" [Escherichia coli K-12 (taxid:83333)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query:    21 VVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAK 80
             V++   DLK  D+  + V  K   TD M+I TG S+ HV +IA  ++    Q  R  G  
Sbjct:    10 VIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAG-- 63

Query:    81 QMMLP-SVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWT 123
               +LP  V+G+++  W+++D G VIVH + E +R  Y LE LW+
Sbjct:    64 --LLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105

GO:0017148 "negative regulation of translation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0090071 "negative regulation of ribosome biogenesis" evidence=IDA

GO:0043023 "ribosomal large subunit binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5LX03 SPO0219 "Iojap-related protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query:    27 DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
             D KA+D+  I +  K    DYMVIA+GRST  V  +A+ ++ + K    E G        
Sbjct:    30 DDKAEDLVQIDLRGKTSMGDYMVIASGRSTRQVSAMAEKLVQRLKD---EFGLNS----K 82

Query:    87 VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPSKSA 130
             ++G+D G WV+ID+G VIVH      R +Y LE +W  + +K++
Sbjct:    83 IEGKDAGDWVLIDTGDVIVHIFRPEVREFYQLEKMWMPQGAKTS 126

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0219 SPO_0219 "iojap-related protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query:    27 DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
             D KA+D+  I +  K    DYMVIA+GRST  V  +A+ ++ + K    E G        
Sbjct:    30 DDKAEDLVQIDLRGKTSMGDYMVIASGRSTRQVSAMAEKLVQRLKD---EFGLNS----K 82

Query:    87 VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPSKSA 130
             ++G+D G WV+ID+G VIVH      R +Y LE +W  + +K++
Sbjct:    83 IEGKDAGDWVLIDTGDVIVHIFRPEVREFYQLEKMWMPQGAKTS 126

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q484R0 CPS_1717 "Iojap-related protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 33/102 (32%), Positives = 56/102 (54%)

Query:    21 VVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAK 80
             V+    D+K  D+  + + +K  + DYM+I +G S  HVK+IAQ++  + + +  E    
Sbjct:    10 VIEKLEDMKGRDIIALNISDKASFADYMIICSGNSNRHVKSIAQSVAMECRAQGTEPRG- 68

Query:    81 QMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLW 122
                   ++G D G+W ++D   +IVH + +  R  YNLE LW
Sbjct:    69 ------MEGNDVGEWALVDLADIIVHVMTDEQRDKYNLEQLW 104

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_1717 CPS_1717 "iojap-related protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 33/102 (32%), Positives = 56/102 (54%)

Query:    21 VVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAK 80
             V+    D+K  D+  + + +K  + DYM+I +G S  HVK+IAQ++  + + +  E    
Sbjct:    10 VIEKLEDMKGRDIIALNISDKASFADYMIICSGNSNRHVKSIAQSVAMECRAQGTEPRG- 68

Query:    81 QMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLW 122
                   ++G D G+W ++D   +IVH + +  R  YNLE LW
Sbjct:    69 ------MEGNDVGEWALVDLADIIVHVMTDEQRDKYNLEQLW 104

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2GLC3 APH_0207 "Iojap-related protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 37/104 (35%), Positives = 57/104 (54%)

Query:    30 ADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQG 89
             A D+  + V ++C  T+Y++I++G ST HVK +A+ +    K++      K      ++G
Sbjct:    21 ARDIAALDVRDRCQLTEYIIISSGNSTSHVKALAEHV----KKKVAHYSKKH-----IEG 71

Query:    90 QDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPSKSATVQ 133
              D G WV+I    VIVH   E  R YY LEDLW+   + +  VQ
Sbjct:    72 LDEGNWVVITLNNVIVHIFREEVREYYKLEDLWSKNLANANLVQ 115

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|APH_0207 APH_0207 "iojap-related protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 37/104 (35%), Positives = 57/104 (54%)

Query:    30 ADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQG 89
             A D+  + V ++C  T+Y++I++G ST HVK +A+ +    K++      K      ++G
Sbjct:    21 ARDIAALDVRDRCQLTEYIIISSGNSTSHVKALAEHV----KKKVAHYSKKH-----IEG 71

Query:    90 QDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPSKSATVQ 133
              D G WV+I    VIVH   E  R YY LEDLW+   + +  VQ
Sbjct:    72 LDEGNWVVITLNNVIVHIFREEVREYYKLEDLWSKNLANANLVQ 115

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CAF9	IOJAM_ARATH	No assigned EC number	0.5448	0.9358	0.7934	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_VIII0928	hypothetical protein (186 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.01470075	hypothetical protein (189 aa)	•			•			•		0.727
	gw1.X.4400.1	hypothetical protein (451 aa)	•						•		0.672
	gw1.I.3103.1	hypothetical protein (176 aa)	•			•					0.664
	estExt_fgenesh4_pm.C_LG_X0783	delta-1-pyrroline-5-carboxylate synthetase (EC-2.7.2.11 1.2.1.41) (719 aa)	•						•		0.642
	fgenesh4_pg.C_scaffold_2544000001	Predicted protein (312 aa)	•						•		0.591
	gw1.XI.1444.1	aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa)	•								0.457

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	156
pfam02410	99	pfam02410, Oligomerisation, Oligomerisation domain	5e-35
TIGR00090	99	TIGR00090, iojap_ybeB, iojap-like ribosome-associa	5e-30
COG0799	115	COG0799, COG0799, Uncharacterized homolog of plant	4e-28
PRK11538	105	PRK11538, PRK11538, ribosome-associated protein; P	6e-20

>gnl|CDD|217021 pfam02410, Oligomerisation, Oligomerisation domain

 Score =  117 bits (295), Expect = 5e-35
 Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 7/96 (7%)

Query: 27  DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
           D KA+D+ V+ V +K    DY VIATG ST HVK IA  +  + K+         +    
Sbjct: 11  DKKAEDIVVLDVSKKSSIADYFVIATGTSTRHVKAIADNVEEELKE-------AGLKPLG 63

Query: 87  VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLW 122
           V+G D G WV++D G V+VH     AR +Y+LE LW
Sbjct: 64  VEGLDEGDWVLLDYGDVVVHIFTPEAREFYDLEKLW 99

In yeasts, this domain is required for the oligomerisation of ATP synthase subunit 9 into a ring structure. Length = 99

>gnl|CDD|161702 TIGR00090, iojap_ybeB, iojap-like ribosome-associated protein

 Score =  104 bits (262), Expect = 5e-30
 Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 7/96 (7%)

Query: 27  DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
           D KA+D+ V+ V  K    DY VIA+G S+ HVK IA  +  + K          +    
Sbjct: 11  DKKAEDIVVLDVRGKSSIADYFVIASGTSSRHVKAIADNVEEELK-------EAGLKPLG 63

Query: 87  VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLW 122
           V+G + G WV++D G V+VH     AR +Y+LE LW
Sbjct: 64  VEGLEEGDWVLVDLGDVVVHIFQPEAREFYDLEKLW 99

This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown [Unknown function, General]. Length = 99

>gnl|CDD|223870 COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]

 Score =  100 bits (251), Expect = 4e-28
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 7/96 (7%)

Query: 27  DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
           D KA+D+ V+ V  K   TDY VIATG S+ HVK IA  +  + K+              
Sbjct: 16  DKKAEDIVVLDVSGKSSLTDYFVIATGNSSRHVKAIADNVKEELKEAGEV-------PLR 68

Query: 87  VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLW 122
           ++G   G+WV+ID G ++VH      R +YNLE LW
Sbjct: 69  IEGLSEGEWVLIDLGDIVVHVFTPEEREFYNLEKLW 104

Length = 115

>gnl|CDD|183184 PRK11538, PRK11538, ribosome-associated protein; Provisional

 Score = 79.1 bits (195), Expect = 6e-20
 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 7/103 (6%)

Query: 21  VVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAK 80
           V++   DLK  D+  + V  K   TD M+I TG S+ HV +IA  ++    Q  R  G  
Sbjct: 10  VIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAG-- 63

Query: 81  QMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWT 123
            ++   V+G++   W+++D G VIVH + E +R  Y LE LW+
Sbjct: 64  -LLPLGVEGENAADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
COG0799	115	Uncharacterized homolog of plant Iojap protein [Fu	100.0
TIGR00090	99	iojap_ybeB iojap-like ribosome-associated protein.	100.0
PRK11538	105	ribosome-associated protein; Provisional	100.0
PF02410	100	Oligomerisation: Oligomerisation domain; InterPro:	100.0
KOG3212	208	consensus Uncharacterized conserved protein relate	99.98

>COG0799 Uncharacterized homolog of plant Iojap protein [Function unknown]

Probab=100.00  E-value=6.2e-42  Score=255.53  Aligned_cols=107  Identities=38%  Similarity=0.680  Sum_probs=99.8

Q ss_pred             HHHHHHHHHhCCCCceEEEecCCCCCccCEEEEEecCCHHHHHHHHHHHHHHHHHHhHHhcccccCCCccccCCCCCEEE
Q 031636           18 MTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVI   97 (156)
Q Consensus        18 ~~~iv~~L~dkka~DI~ViDv~~~~~~~Dy~VIaTg~S~rh~~aia~~i~~~lk~~~~e~g~~~~~~~~iEG~~~~~Wvl   97 (156)
                      ++.++++|+|+||+||++|||+++|++|||||||||+|.||++|||++|...+|+.    |.   .+.++||..+++|+|
T Consensus         7 ~~~i~~alddkKAeDIv~lDv~~~s~~tDyfVIatg~s~rhv~Aiad~i~~~~k~~----g~---~~~~~EG~~~~~Wvl   79 (115)
T COG0799           7 LEVIVEALDDKKAEDIVVLDVSGKSSLTDYFVIATGNSSRHVKAIADNVKEELKEA----GE---VPLRIEGLSEGEWVL   79 (115)
T ss_pred             HHHHHHHHHhccCCCeEEEEccCCcccccEEEEEEeCchHHHHHHHHHHHHHHHHc----CC---CcccccCCCcCCEEE
Confidence            45899999999999999999999999999999999999999999999999999776    43   356999999999999


Q ss_pred             EecCceEEEecChhhhhhcChhhhcCCCCCCCCc
Q 031636           98 IDSGKVIVHALDENARAYYNLEDLWTSEPSKSAT  131 (156)
Q Consensus        98 lD~GdVvVHIft~E~Re~Y~LE~LW~~a~~~~~~  131 (156)
                      +|+||||||||+|+.|+|||||+||++++..+.+
T Consensus        80 iD~GdivVHvf~~e~R~~Y~LEklW~d~~~~~~~  113 (115)
T COG0799          80 IDLGDIVVHVFTPEEREFYNLEKLWGDAPVVDVD  113 (115)
T ss_pred             EecCcEEEEecCHHHHHHccHHHHhccCCccCcc
Confidence            9999999999999999999999999999987654

>TIGR00090 iojap_ybeB iojap-like ribosome-associated protein

Probab=100.00  E-value=2.3e-40  Score=241.11  Aligned_cols=98  Identities=40%  Similarity=0.694  Sum_probs=92.9

Q ss_pred             HHHHHHHHHhCCCCceEEEecCCCCCccCEEEEEecCCHHHHHHHHHHHHHHHHHHhHHhcccccCCCccccCCCCCEEE
Q 031636           18 MTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVI   97 (156)
Q Consensus        18 ~~~iv~~L~dkka~DI~ViDv~~~~~~~Dy~VIaTg~S~rh~~aia~~i~~~lk~~~~e~g~~~~~~~~iEG~~~~~Wvl   97 (156)
                      ++.++++|+++||+||+||||++.++++||||||||+|.||++|+|++|.+.+|+.    |.   .++++||.++++|++
T Consensus         2 ~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VI~Tg~S~rh~~aia~~v~~~~k~~----~~---~~~~~EG~~~~~Wil   74 (99)
T TIGR00090         2 LELIVEALDDKKAEDIVVLDVRGKSSIADYFVIASGTSSRHVKAIADNVEEELKEA----GL---KPLGVEGLEEGDWVL   74 (99)
T ss_pred             HHHHHHHHHHcCCCCEEEEECCCCCcccCEEEEEEeCCHHHHHHHHHHHHHHHHHc----CC---CcccccCCCCCCEEE
Confidence            56899999999999999999999999999999999999999999999999999876    44   356899999999999


Q ss_pred             EecCceEEEecChhhhhhcChhhhc
Q 031636           98 IDSGKVIVHALDENARAYYNLEDLW  122 (156)
Q Consensus        98 lD~GdVvVHIft~E~Re~Y~LE~LW  122 (156)
                      +|||+|+||||+||.|+|||||+||
T Consensus        75 lD~g~ivVHif~~e~R~~Y~LE~LW   99 (99)
T TIGR00090        75 VDLGDVVVHIFQPEAREFYDLEKLW   99 (99)
T ss_pred             EECCCEEEEeCChHHhhhcCHhhcC
Confidence            9999999999999999999999999

This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown.

>PRK11538 ribosome-associated protein; Provisional

Probab=100.00  E-value=2.3e-40  Score=243.87  Aligned_cols=99  Identities=35%  Similarity=0.670  Sum_probs=92.9

Q ss_pred             HHHHHHHHHhCCCCceEEEecCCCCCccCEEEEEecCCHHHHHHHHHHHHHHHHHHhHHhcccccCCCccccCCCCCEEE
Q 031636           18 MTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVI   97 (156)
Q Consensus        18 ~~~iv~~L~dkka~DI~ViDv~~~~~~~Dy~VIaTg~S~rh~~aia~~i~~~lk~~~~e~g~~~~~~~~iEG~~~~~Wvl   97 (156)
                      ++.++++|+++||+||+|+||++.|+++||||||||+|.||++|||++|.+.+++.    |.   .+.++||..+++|+|
T Consensus         7 ~~~i~~~l~dkKa~DI~vlDv~~~~~~~Dy~VIatg~S~rh~~aia~~v~~~~k~~----~~---~~~~~eG~~~~~Wil   79 (105)
T PRK11538          7 QDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVVQESRAA----GL---LPLGVEGENAADWIV   79 (105)
T ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcccCEEEEEEeCCHHHHHHHHHHHHHHHHHc----CC---CCCcccCCCCCCEEE
Confidence            44799999999999999999999999999999999999999999999999998875    44   356899999999999


Q ss_pred             EecCceEEEecChhhhhhcChhhhcC
Q 031636           98 IDSGKVIVHALDENARAYYNLEDLWT  123 (156)
Q Consensus        98 lD~GdVvVHIft~E~Re~Y~LE~LW~  123 (156)
                      +|||+||||||+|+.|+|||||+||+
T Consensus        80 lD~g~ivVHif~~e~Re~Y~LE~LW~  105 (105)
T PRK11538         80 VDLGDVIVHVMQEESRRLYELEKLWS  105 (105)
T ss_pred             EeCCCEEEEcCCHHHHhhcCHHhhhC
Confidence            99999999999999999999999996

>PF02410 Oligomerisation: Oligomerisation domain; InterPro: IPR004394 The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells

Probab=100.00  E-value=8e-39  Score=232.70  Aligned_cols=98  Identities=41%  Similarity=0.770  Sum_probs=87.9

Q ss_pred             HHHHHHHHHhCCCCceEEEecCCCCCccCEEEEEecCCHHHHHHHHHHHHHHH-HHHhHHhcccccCCCccccCCCCCEE
Q 031636           18 MTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKA-KQRQREVGAKQMMLPSVQGQDTGKWV   96 (156)
Q Consensus        18 ~~~iv~~L~dkka~DI~ViDv~~~~~~~Dy~VIaTg~S~rh~~aia~~i~~~l-k~~~~e~g~~~~~~~~iEG~~~~~Wv   96 (156)
                      ++.++++|+++||+||++||+++.++++||||||||+|.||++|+|++|.+.+ |+.    |.   .++++||.++++|+
T Consensus         2 ~~~i~~~l~~~k~~dI~v~dv~~~~~~~dy~II~T~~S~rh~~aia~~v~~~~~k~~----~~---~~~~~eG~~~~~W~   74 (100)
T PF02410_consen    2 LEEIVEALEDKKAEDIVVLDVREKSSWADYFIIATGRSERHVRAIADEVEKALKKEY----GE---RPLRIEGLDESDWV   74 (100)
T ss_dssp             HHHHHHHHHHTT-EEEEEEEGCTTBSS-SEEEEEEESSHHHHHHHHHHHHHHH-HHT----T-------EEESTTTTSEE
T ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHHc----CC---cccccCCCCCCCEE
Confidence            57899999999999999999999999999999999999999999999999999 443    33   35789999999999


Q ss_pred             EEecCceEEEecChhhhhhcChhhhc
Q 031636           97 IIDSGKVIVHALDENARAYYNLEDLW  122 (156)
Q Consensus        97 llD~GdVvVHIft~E~Re~Y~LE~LW  122 (156)
                      ++|||+|+||||+||.|+|||||+||
T Consensus        75 lvD~g~ivVHif~~e~R~~Y~LE~LW  100 (100)
T PF02410_consen   75 LVDYGDIVVHIFTPEAREYYDLESLW  100 (100)
T ss_dssp             EEEESSEEEEEEEHHHHHHHCHHHHT
T ss_pred             EEcccEEEEEcCCHHHHhHcCHhhcC
Confidence            99999999999999999999999999

Maize has two RNA polymerases in plastids, but the plastid-encoded one, similar to bacterial RNA polymerases, is missing in iojap mutants. The role of iojap in chloroplast development, and the role of its bacterial orthologs modeled here, is unclear [, ]. This entry contains the bacterial protein YbeB (P0AAT6 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2O5A_A 2ID1_B 3UPS_A.

>KOG3212 consensus Uncharacterized conserved protein related to IojAP [Function unknown]

Probab=99.98  E-value=1.6e-32  Score=219.12  Aligned_cols=132  Identities=43%  Similarity=0.726  Sum_probs=115.6

Q ss_pred             HHHHHHHHHhCCCCceEEEecCCCCCccCEEEEEecCCHHHHHHHHHHHHHHHHHHhHHhcccccCCCccccCCCCCEEE
Q 031636           18 MTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVI   97 (156)
Q Consensus        18 ~~~iv~~L~dkka~DI~ViDv~~~~~~~Dy~VIaTg~S~rh~~aia~~i~~~lk~~~~e~g~~~~~~~~iEG~~~~~Wvl   97 (156)
                      ++.++++|.+.+|.||+|+-+.+.+.|+||+|||||+|.||+.|+|++|++.+|.... .|.   ..+++||.++++|++
T Consensus        71 ve~vv~lLrdenadDVfVi~vpeem~y~dh~VIcSgrs~rhl~aiAe~lv~m~Kik~~-kgd---~hvriegk~s~dW~v  146 (208)
T KOG3212|consen   71 VEEVVKLLRDENADDVFVIPVPEEMFYADHTVICSGRSDRHLRAIAEALVYMAKIKSQ-KGD---KHVRIEGKQSSDWIV  146 (208)
T ss_pred             HHHHHHHHHhcccCceEEEeccccceeeeeEEEEecCchHHHHHHHHHHHHHHHHhhc-CCC---cccccccccCCCeEE
Confidence            8899999999999999999999999999999999999999999999999999987621 133   467899999999999


Q ss_pred             EecCceEEEecChhhhhhcChhhhcCCCCCC--CCchHHHHHHHHHHhhccCCC-Cccc
Q 031636           98 IDSGKVIVHALDENARAYYNLEDLWTSEPSK--SATVQDLQKAFVKVRRKNNSK-KPVE  153 (156)
Q Consensus        98 lD~GdVvVHIft~E~Re~Y~LE~LW~~a~~~--~~~~~~l~~~~~~~~~~~~~~-~~~~  153 (156)
                      +|+|.++||+|+||+|++||||.||+.....  .....++++-|+..+-+|||+ +|++
T Consensus       147 ~D~g~~vvH~mseeaRe~YdLEsLWa~~S~ddr~sd~~t~p~~fIl~~p~~~S~v~p~k  205 (208)
T KOG3212|consen  147 IDYGKFVVHAMSEEAREYYDLESLWAAESSDDRTSDQDTLPNVFILVRPKNNSKVKPAK  205 (208)
T ss_pred             EEeceEEEEecCHHHhhhccHHHHhcccCcCchhhccccCccceEEecCCCCcccChhh
Confidence            9999999999999999999999999986544  222235899999999999987 4443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	156
3ups_A	136	Crystal Structure Of Iojap-Like Protein From Zymomo		3e-10
2o5a_A	125	Crystal Structure Of Q9kd89 From Bacillus Haloduran		4e-10
2id1_A	130	X-Ray Crystal Structure Of Protein Cv0518 From Chro		3e-07

>pdb|3UPS|A Chain A, Crystal Structure Of Iojap-Like Protein From Zymomonas Mobilis Length = 136

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 27  DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
           D +A ++  IP+  K    DY VIA+GRS+  V   AQ +  + K       A    +  
Sbjct: 32  DDQALEIATIPLAGKSSIADYXVIASGRSSRQVTAXAQKLADRIK-------AATGYVSK 84
Query: 87  VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLW 122
           ++G     WV++D+G +I+H      R++YNLE  W
Sbjct: 85  IEGLPAADWVLLDAGDIIIHLFRPEVRSFYNLERXW 120

>pdb|2O5A|A Chain A, Crystal Structure Of Q9kd89 From Bacillus Halodurans. Northeast Structural Genomics Target Bhr21 Length = 125

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 22  VNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ 81
           VN   D KA+ V  +         D+ +I  G S   V    QAI ++ K+  +E G + 
Sbjct: 11  VNAVDDKKAEQVVALNXKGISLIADFFLICHGNSEKQV----QAIAHELKKVAQEQGIE- 65
Query: 82  MMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPS 127
             +  ++G +  +WV+ID G V+VH   ++ RAYYNLE LW   P+
Sbjct: 66  --IKRLEGYEQARWVLIDLGDVVVHVFHKDERAYYNLEKLWGDAPT 109

>pdb|2ID1|A Chain A, X-Ray Crystal Structure Of Protein Cv0518 From Chromobacterium Violaceum, Northeast Structural Genomics Consortium Target Cvr5. Length = 130

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 27  DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
           D+K  D+  +   +        ++ATG S   VK +A ++  K K+   ++   +     
Sbjct: 16  DIKGKDIIELDTSKLTSLFQRXIVATGDSNRQVKALANSVQVKLKEAGVDIVGSE----- 70
Query: 87  VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSE-PS 127
             G ++G+WV++D+G V+VH      R YY++E LW  + PS
Sbjct: 71  --GHESGEWVLVDAGDVVVHVXLPAVRDYYDIEALWGGQKPS 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
3ups_A	136	Iojap-like protein; PSI-biology, MCSG, midwest cen	9e-31
2id1_A	130	Hypothetical protein; alpha-beta protein, structur	3e-30
2o5a_A	125	BH1328 protein; BHR21, NESG, structural genomics,	9e-29

>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp} Length = 136

 Score =  106 bits (268), Expect = 9e-31
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 13/139 (9%)

Query: 2   TGVTKESETLARKRPSMTS------VVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRS 55
           +       +  + + S         V +   D +A ++  IP+  K    DYMVIA+GRS
Sbjct: 1   SNAMPAPSSPRKNQTSFDPEMLLKLVTDSLDDDQALEIATIPLAGKSSIADYMVIASGRS 60

Query: 56  TWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAY 115
           +  V  +AQ +  + K     V         ++G     WV++D+G +I+H      R++
Sbjct: 61  SRQVTAMAQKLADRIKAATGYV-------SKIEGLPAADWVLLDAGDIIIHLFRPEVRSF 113

Query: 116 YNLEDLWTSEPSKSATVQD 134
           YNLE +W         V  
Sbjct: 114 YNLERMWGFGDESDQPVSQ 132

>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12 Length = 130

 Score =  105 bits (265), Expect = 3e-30
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 7/104 (6%)

Query: 27  DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
           D+K  D+  +   +       M++ATG S   VK +A ++  K K+   ++         
Sbjct: 16  DIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLKEAGVDI-------VG 68

Query: 87  VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPSKSA 130
            +G ++G+WV++D+G V+VH +    R YY++E LW  +    A
Sbjct: 69  SEGHESGEWVLVDAGDVVVHVMLPAVRDYYDIEALWGGQKPSFA 112

>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12 Length = 125

 Score =  101 bits (254), Expect = 9e-29
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 27  DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
           D KA+ V  + +       D+ +I  G S   V+ IA  +   A+++  E+         
Sbjct: 16  DKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQGIEI-------KR 68

Query: 87  VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLW 122
           ++G +  +WV+ID G V+VH   ++ RAYYNLE LW
Sbjct: 69  LEGYEQARWVLIDLGDVVVHVFHKDERAYYNLEKLW 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
2o5a_A	125	BH1328 protein; BHR21, NESG, structural genomics,	100.0
3ups_A	136	Iojap-like protein; PSI-biology, MCSG, midwest cen	100.0
2id1_A	130	Hypothetical protein; alpha-beta protein, structur	100.0

>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12

Probab=100.00  E-value=2e-43  Score=266.16  Aligned_cols=109  Identities=31%  Similarity=0.557  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhCCCCceEEEecCCCCCccCEEEEEecCCHHHHHHHHHHHHHHHHHHhHHhcccccCCCccccCCCCCEEE
Q 031636           18 MTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVI   97 (156)
Q Consensus        18 ~~~iv~~L~dkka~DI~ViDv~~~~~~~Dy~VIaTg~S~rh~~aia~~i~~~lk~~~~e~g~~~~~~~~iEG~~~~~Wvl   97 (156)
                      ++.++++|+++||+||++|||++.+++|||||||||+|.||++|||++|.+.+|+.    |.   .++++||..+++|+|
T Consensus         7 ~~~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIatg~S~rqv~Aiad~v~~~lk~~----g~---~~~~~EG~~~~~WvL   79 (125)
T 2o5a_A            7 LQLAVNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQ----GI---EIKRLEGYEQARWVL   79 (125)
T ss_dssp             HHHHHHHHHHTTCEEEEEEECBTTBC--CEEEEEEESSHHHHHHHHHHHHHHHHHT----TC---CCCEEESTTTTSEEE
T ss_pred             HHHHHHHHHHcCCCCeEEEEcCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHc----CC---ccccccCCCCCCEEE
Confidence            34899999999999999999999999999999999999999999999999999876    44   357999999999999


Q ss_pred             EecCceEEEecChhhhhhcChhhhcCCCCCCCCchH
Q 031636           98 IDSGKVIVHALDENARAYYNLEDLWTSEPSKSATVQ  133 (156)
Q Consensus        98 lD~GdVvVHIft~E~Re~Y~LE~LW~~a~~~~~~~~  133 (156)
                      +||||||||||+||.|+|||||+||+++|.++++..
T Consensus        80 lD~GdVvVHif~~e~RefY~LE~LW~da~~~~~~~~  115 (125)
T 2o5a_A           80 IDLGDVVVHVFHKDERAYYNLEKLWGDAPTVELEGV  115 (125)
T ss_dssp             EECSSEEEEEEETTCGGGTSTTTCC---CBCCSCC-
T ss_pred             EeCCCEEEEeCCHHHHhHcCHHHHhCCCCccccccc
Confidence            999999999999999999999999999999877643

>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}

Probab=100.00  E-value=2e-42  Score=264.05  Aligned_cols=107  Identities=30%  Similarity=0.586  Sum_probs=96.6

Q ss_pred             HHHHHHHHHhCCCCceEEEecCCCCCccCEEEEEecCCHHHHHHHHHHHHHHHHHHhHHhcccccCCCccccCCCCCEEE
Q 031636           18 MTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVI   97 (156)
Q Consensus        18 ~~~iv~~L~dkka~DI~ViDv~~~~~~~Dy~VIaTg~S~rh~~aia~~i~~~lk~~~~e~g~~~~~~~~iEG~~~~~Wvl   97 (156)
                      ++.|+++|+++||+||+||||++.+++|||||||||+|.||++|||++|.+.+|+.+    .   .++++||..+++|+|
T Consensus        23 ~~~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIatg~S~rqv~Aiad~v~~~lk~~g----~---~~~~~EG~~~~~WvL   95 (136)
T 3ups_A           23 LKLVTDSLDDDQALEIATIPLAGKSSIADYMVIASGRSSRQVTAMAQKLADRIKAAT----G---YVSKIEGLPAADWVL   95 (136)
T ss_dssp             HHHHHHHHHHTTCEEEEEEECTTTCSSCSEEEEEECSSHHHHHHHHHHHHHHHHHHH----C---CCCEEESCSSCSEEE
T ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHcC----C---ccCcccCCCCCCEEE
Confidence            348999999999999999999999999999999999999999999999999998873    3   357999999999999


Q ss_pred             EecCceEEEecChhhhhhcChhhhcCCCCCCCCc
Q 031636           98 IDSGKVIVHALDENARAYYNLEDLWTSEPSKSAT  131 (156)
Q Consensus        98 lD~GdVvVHIft~E~Re~Y~LE~LW~~a~~~~~~  131 (156)
                      +||||||||||+||.|+|||||+||++++..+.+
T Consensus        96 lD~GdVvVHIf~~e~RefY~LE~LW~d~~~~d~~  129 (136)
T 3ups_A           96 LDAGDIIIHLFRPEVRSFYNLERMWGFGDESDQP  129 (136)
T ss_dssp             EECSSEEEEEECHHHHHHHHHHHHTTTTC-----
T ss_pred             EeCCCEEEEeCCHHHHHHcCHHHHhCcCCcccch
Confidence            9999999999999999999999999999877544

>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12

Probab=100.00  E-value=3.1e-42  Score=261.21  Aligned_cols=104  Identities=30%  Similarity=0.585  Sum_probs=98.1

Q ss_pred             HHHHHHHHHhCCCCceEEEecCCCCCccCEEEEEecCCHHHHHHHHHHHHHHHHHHhHHhcccccCCCccccCCCCCEEE
Q 031636           18 MTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVI   97 (156)
Q Consensus        18 ~~~iv~~L~dkka~DI~ViDv~~~~~~~Dy~VIaTg~S~rh~~aia~~i~~~lk~~~~e~g~~~~~~~~iEG~~~~~Wvl   97 (156)
                      ++.++++|+++||+||++|||++.++++||||||||+|.||++|||++|.+.+|+.    |.   .+.++||.++++|+|
T Consensus         7 ~~~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIaTg~S~rqv~Aiad~v~~~lk~~----g~---~~~~~EG~~~~~WvL   79 (130)
T 2id1_A            7 SKLAIEALEDIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLKEA----GV---DIVGSEGHESGEWVL   79 (130)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEGGGTCSSCSEEEEEECSSHHHHHHHHHHHHHHHHHT----TC---CCCBCCSTTTSSEEE
T ss_pred             HHHHHHHHHHcCCCCeEEEEcCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHc----CC---cCccccCCCCCCEEE
Confidence            34899999999999999999999999999999999999999999999999999876    44   357999999999999


Q ss_pred             EecCceEEEecChhhhhhcChhhhc-CCCCCC
Q 031636           98 IDSGKVIVHALDENARAYYNLEDLW-TSEPSK  128 (156)
Q Consensus        98 lD~GdVvVHIft~E~Re~Y~LE~LW-~~a~~~  128 (156)
                      +||||||||||+||.|+|||||+|| +++|.+
T Consensus        80 lD~GdVvVHIf~~e~RefY~LE~LW~~da~~~  111 (130)
T 2id1_A           80 VDAGDVVVHVMLPAVRDYYDIEALWGGQKPSF  111 (130)
T ss_dssp             EEETTEEEEEECHHHHHHHCHHHHTTCCCCCC
T ss_pred             EecCCEEEEcCCHHHHhHcCHHHHhcCCCccc
Confidence            9999999999999999999999999 899887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	156
d2o5aa1	113	d.218.1.12 (A:2-114) Uncharacterized protein BH132	8e-27
d2id1a1	120	d.218.1.12 (A:1-120) Hypothetical protein CV0518 {	1e-25

>d2o5aa1 d.218.1.12 (A:2-114) Uncharacterized protein BH1328 {Bacillus halodurans [TaxId: 86665]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Iojap/YbeB-like
domain: Uncharacterized protein BH1328
species: Bacillus halodurans [TaxId: 86665]

 Score = 94.9 bits (236), Expect = 8e-27
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 27  DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
           D KA+ V  + +       D+ +I  G S   V+ IA  +   A++       + + +  
Sbjct: 15  DKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQE-------QGIEIKR 67

Query: 87  VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEP 126
           ++G +  +WV+ID G V+VH   ++ RAYYNLE LW   P
Sbjct: 68  LEGYEQARWVLIDLGDVVVHVFHKDERAYYNLEKLWGDAP 107

>d2id1a1 d.218.1.12 (A:1-120) Hypothetical protein CV0518 {Chromobacterium violaceum [TaxId: 536]} Length = 120

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Iojap/YbeB-like
domain: Hypothetical protein CV0518
species: Chromobacterium violaceum [TaxId: 536]

 Score = 92.3 bits (229), Expect = 1e-25
 Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 27  DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
           D+K  D+  +   +       M++ATG S   VK +A ++         ++    + +  
Sbjct: 16  DIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQ-------VKLKEAGVDIVG 68

Query: 87  VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEP 126
            +G ++G+WV++D+G V+VH +    R YY++E LW  + 
Sbjct: 69  SEGHESGEWVLVDAGDVVVHVMLPAVRDYYDIEALWGGQK 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d2o5aa1	113	Uncharacterized protein BH1328 {Bacillus haloduran	100.0
d2id1a1	120	Hypothetical protein CV0518 {Chromobacterium viola	100.0

>d2o5aa1 d.218.1.12 (A:2-114) Uncharacterized protein BH1328 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Iojap/YbeB-like
domain: Uncharacterized protein BH1328
species: Bacillus halodurans [TaxId: 86665]

Probab=100.00  E-value=1.1e-42  Score=256.14  Aligned_cols=107  Identities=32%  Similarity=0.582  Sum_probs=94.9

Q ss_pred             HHHHHHHHHhCCCCceEEEecCCCCCccCEEEEEecCCHHHHHHHHHHHHHHHHHHhHHhcccccCCCccccCCCCCEEE
Q 031636           18 MTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVI   97 (156)
Q Consensus        18 ~~~iv~~L~dkka~DI~ViDv~~~~~~~Dy~VIaTg~S~rh~~aia~~i~~~lk~~~~e~g~~~~~~~~iEG~~~~~Wvl   97 (156)
                      ++.++++|+++||+||+||||++.++++||||||||+|.||++|+|+.|.+.+|+.    |.   .++++||..+++|+|
T Consensus         6 ~~~i~~~l~dkKa~dI~vldv~~~~~~~D~~VIatg~S~rh~~aia~~v~~~~k~~----~~---~~~~~eG~~~~~Wvl   78 (113)
T d2o5aa1           6 LQLAVNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQ----GI---EIKRLEGYEQARWVL   78 (113)
T ss_dssp             HHHHHHHHHHTTCEEEEEEECBTTBC--CEEEEEEESSHHHHHHHHHHHHHHHHHT----TC---CCCEEESTTTTSEEE
T ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcccCEEEEEEeCCHHHHHHHHHHHHHHHHHh----cc---ccccccCCCCCCEEE
Confidence            34899999999999999999999999999999999999999999999999999886    44   356899999999999


Q ss_pred             EecCceEEEecChhhhhhcChhhhcCCCCCCCCc
Q 031636           98 IDSGKVIVHALDENARAYYNLEDLWTSEPSKSAT  131 (156)
Q Consensus        98 lD~GdVvVHIft~E~Re~Y~LE~LW~~a~~~~~~  131 (156)
                      +|||+||||||+||.|+|||||+||+++|.+++.
T Consensus        79 iD~gdvvVHif~~e~Re~Y~LE~LW~da~~i~~e  112 (113)
T d2o5aa1          79 IDLGDVVVHVFHKDERAYYNLEKLWGDAPTVELE  112 (113)
T ss_dssp             EECSSEEEEEEETTCGGGTSTTTCC---CBCCSC
T ss_pred             eeCCCEEEEcCCHHHHhHcCHHHHhCcCCcCCCC
Confidence            9999999999999999999999999999998763

>d2id1a1 d.218.1.12 (A:1-120) Hypothetical protein CV0518 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Iojap/YbeB-like
domain: Hypothetical protein CV0518
species: Chromobacterium violaceum [TaxId: 536]

Probab=100.00  E-value=4e-41  Score=250.09  Aligned_cols=104  Identities=30%  Similarity=0.595  Sum_probs=96.4

Q ss_pred             HHHHHHHhCCCCceEEEecCCCCCccCEEEEEecCCHHHHHHHHHHHHHHHHHHhHHhcccccCCCccccCCCCCEEEEe
Q 031636           20 SVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVIID   99 (156)
Q Consensus        20 ~iv~~L~dkka~DI~ViDv~~~~~~~Dy~VIaTg~S~rh~~aia~~i~~~lk~~~~e~g~~~~~~~~iEG~~~~~WvllD   99 (156)
                      .++++|+++||+||+||||++.++++||||||||+|.||++|+|+.|.+.+|+.    |.   .+.++||..+++|+|+|
T Consensus         9 ~i~~~l~d~Ka~DI~vldv~~~~~~~D~~VI~Tg~S~rh~~aia~~i~~~lk~~----~~---~~~~~eG~~~~~WillD   81 (120)
T d2id1a1           9 LAIEALEDIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLKEA----GV---DIVGSEGHESGEWVLVD   81 (120)
T ss_dssp             HHHHHHHHTTCEEEEEEEGGGTCSSCSEEEEEECSSHHHHHHHHHHHHHHHHHT----TC---CCCBCCSTTTSSEEEEE
T ss_pred             HHHHHHHHcCCCCeEEEECCCCCccccEEEEEEecCHHHHHHHHHHHHHHHHHc----CC---ccccccCCCCCCEEEEe
Confidence            789999999999999999999999999999999999999999999999999876    44   35689999999999999


Q ss_pred             cCceEEEecChhhhhhcChhhhcCCC-CCCCC
Q 031636          100 SGKVIVHALDENARAYYNLEDLWTSE-PSKSA  130 (156)
Q Consensus       100 ~GdVvVHIft~E~Re~Y~LE~LW~~a-~~~~~  130 (156)
                      ||+||||||+||.|+||+||+||+++ |.+.+
T Consensus        82 ~gdivVHif~~e~R~~Y~LE~LW~d~~p~~~~  113 (120)
T d2id1a1          82 AGDVVVHVMLPAVRDYYDIEALWGGQKPSFAV  113 (120)
T ss_dssp             ETTEEEEEECHHHHHHHCHHHHTTCCCCCCCS
T ss_pred             cCceEEEeCCHHHHHHcCHHHHhCCCCCCCcC
Confidence            99999999999999999999999997 55443