Citrus Sinensis ID: 031657

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MPPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRYEQGGPSR
Secondary Structure (PSIPRED)
cccccccccccEEEEEcccccEEEccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccEEEcccccccccccccccccccccEEEEcccccHHHHcccccccccccccccccEEEccEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEcccccEEEEcHHHccccccccccccccccccccccccccccccccEEEEcccccccEcccccccccccccccEEEEcccHHHHHccHHHcccccccEEEEcccHHHHHHHHHccccccHHHccccEEEEEccEccccccc
Coil and Loop (DISEMBL)
mpplgklpsleilrIEEMVSVKMVGdeflgigicdhnhihgtfsssssssssvvafpklekldLGIMLQLeewdfgkeditimpqVKSLSIFFCEKLKslpdqllrsttlesleiadvpiveenfkkdtgkdwskishipnilISRRYEQGGPSR
Flexible Loop (DISEMBL)
mpplgklpsleiLRIEEMVSVKMVGDEFLGIGICDHNHIHGTfsssssssssVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSttlesleiadvpiveenfkkdtgkdwskishipnilisrryeqggpsr
Low Complexity Region (SEG)
MPPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFsssssssssVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRYEQGGPSR
Disordered region (IsUnstruct)
*********LEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTF*********VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILIS**********
Disordered Region (DISOPRED)
MPPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGT************AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRYEQGG***
Disordered Region (DISEMBL)
MPPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGT************AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRYEQGGPSR
Disordered Region (DISPRO)
MPPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHN************SSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRYEQ*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRYEQGGPSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
Q7XA39	988	Putative disease resistan	N/A	no	0.483	0.075	0.354	5e-07
Q7XA40	992	Putative disease resistan	N/A	no	0.593	0.092	0.351	9e-07
Q7XBQ9	970	Disease resistance protei	N/A	no	0.593	0.094	0.340	1e-06
Q9FJB5	901	Disease resistance RPP8-l	yes	no	0.535	0.092	0.363	4e-06
Q9FJK8	908	Probable disease resistan	no	no	0.548	0.093	0.352	8e-06
P59584	910	Disease resistance protei	no	no	0.548	0.093	0.340	2e-05
Q8W3K3	910	Putative disease resistan	no	no	0.6	0.102	0.292	7e-05
Q8W4J9	908	Disease resistance protei	no	no	0.741	0.126	0.295	0.0001
P0C8S1	906	Probable disease resistan	no	no	0.503	0.086	0.326	0.0001
P0DI16	1017	Probable disease resistan	no	no	0.541	0.082	0.333	0.0002

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 68  LQLEEWD----FGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEE 123
           LQ+E  D    F ++ +  +  +  L + +C+ LK LP+ L   T L +L ++  P VE+
Sbjct: 907 LQIESCDSLESFPEQGLEGLTSLTQLFVKYCKMLKCLPEGLQHLTALTNLGVSGCPEVEK 966

Query: 124 NFKKDTGKDWSKISHIPNI 142
              K+ G+DW KI+HIPN+
Sbjct: 967 RCDKEIGEDWHKIAHIPNL 985

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.
Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 51  SSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTL 110
           +S+ +   L+ LD+     LE     +E +  +  +  L +  C  LK LP+ L   TTL
Sbjct: 899 TSLASLNNLKCLDIRYCYALE--SLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTL 956

Query: 111 ESLEIADVPIVEENFKKDTGKDWSKISHIPNILI 144
            SL+I   P + +  +K  G+DW KISHIPN+ I
Sbjct: 957 TSLKIRGCPQLIKRCEKGIGEDWHKISHIPNVNI 990

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 51  SSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTL 110
           +S+ +   L+ L + +   LE     +E +  +  +  L +  C  LK LP+ L   TTL
Sbjct: 877 TSLASLNALKSLKIQLCCALE--SLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTL 934

Query: 111 ESLEIADVPIVEENFKKDTGKDWSKISHIPNILI 144
            SL+I   P + +  +K  G+DW KISHIPN+ I
Sbjct: 935 TSLKIRGCPQLIKRCEKGIGEDWHKISHIPNVNI 968

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 5/88 (5%)

Query: 55  AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLE 114
            FP+L  L +    +LEEW   +     MP ++ L I  CEKL+ LPD L   T+L+ L+
Sbjct: 808 GFPQLRALQISEQSELEEWIVEEGS---MPCLRDLIIHSCEKLEELPDGLKYVTSLKELK 864

Query: 115 IADVPIVEENFKKDTGKDWSKISHIPNI 142
           I  +    E  +K  G+D+ K+ HIP++
Sbjct: 865 IEGMK--REWKEKLVGEDYYKVQHIPDV 890

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 55  AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLE 114
            FP+L  L +    +LEEW   +     MP +++L+I  CEKLK LPD L   T+L+ L+
Sbjct: 817 GFPQLCALGISGESELEEWIVEEGS---MPCLRTLTIHDCEKLKELPDGLKYITSLKELK 873

Query: 115 IADVPIVEENFKKDTGKDWSKISHIPNI 142
           I ++    +      G+D+ K+ HIP++
Sbjct: 874 IREMKREWKEKLVPGGEDYYKVQHIPDV 901

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 55  AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLE 114
            F +L  LD+    +LE+W   +     MP +++L+I  CEKLK LPD L   T+L+ L+
Sbjct: 819 GFTQLCALDISKQSELEDWIVEEGS---MPCLRTLTIHDCEKLKELPDGLKYITSLKELK 875

Query: 115 IADVPIVEENFKKDTGKDWSKISHIPNI 142
           I  +    +      G+D+ K+ HIP++
Sbjct: 876 IEGMKREWKEKLVPGGEDYYKVQHIPDV 903

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 6/99 (6%)

Query: 51  SSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTL 110
           SS   FP+L +L +  + + EEW   +     MP++ +L+I+ C+KLK LPD L     +
Sbjct: 818 SSDGGFPQLHRLYIWGLAEWEEWIVEEGS---MPRLHTLTIWNCQKLKQLPDGL---RFI 871

Query: 111 ESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRYE 149
            S++  D+    +    + G+++ K+ HIP++   + Y+
Sbjct: 872 YSIKDLDMDKKWKEILSEGGEEYYKVQHIPSVKFEKDYK 910

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 27/142 (19%)

Query: 1   MPPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLE 60
           MP L KL  L+        SV++    FLG                S    S   FP+L 
Sbjct: 787 MPILEKLLHLK--------SVRLARKAFLG----------------SRMVCSKGGFPQLC 822

Query: 61  KLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPI 120
            +++    +LEEW   +     MP +++L+I  C+KLK LPD L   T+L+ L+I  +  
Sbjct: 823 VIEISKESELEEWIVEEGS---MPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKR 879

Query: 121 VEENFKKDTGKDWSKISHIPNI 142
             +      G+D+ K+ HIP++
Sbjct: 880 EWKEKLVPGGEDYYKVQHIPDV 901

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 17/95 (17%)

Query: 55  AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLE 114
            FP+L  L +    +L EW   + +   MP +++L+I  C+KLK LPD L   T L+ L+
Sbjct: 815 GFPQLLALKMSYKKELVEW---RVEEGSMPCLRTLTIDNCKKLKQLPDGLKYVTCLKELK 871

Query: 115 IADVPIVEENFKKD-------TGKDWSKISHIPNI 142
           I       E  K++        G+D+ K+ HIP++
Sbjct: 872 I-------ERMKREWTERLVIGGEDYYKVQHIPSV 899

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI16|DRL44_ARATH Probable disease resistance protein RDL5 OS=Arabidopsis thaliana GN=RDL5 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 12/96 (12%)

Query: 55  AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLE 114
            FP+L+KL +    +LEEW+    +   MP + +L I  C KLK LPD L    +L++L+
Sbjct: 912 GFPQLQKLSI---YRLEEWEEWIVEQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLKNLK 968

Query: 115 IADVPIVEENFKK---DTGKDWSKISHIPNILISRR 147
           I+      E +K+   + G+++ K+ HIP++    R
Sbjct: 969 IS------ERWKERLSEGGEEYYKVQHIPSVEFYHR 998

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
255549784	786	leucine-rich repeat containing protein,	0.845	0.166	0.483	1e-21
108947192	269	putative NBS-LRR disease resistance prot	0.870	0.501	0.435	4e-21
224115682	388	predicted protein [Populus trichocarpa]	0.929	0.371	0.464	5e-21
147769144	628	hypothetical protein VITISV_033996 [Viti	0.806	0.199	0.410	2e-20
224115686	938	cc-nbs-lrr resistance protein [Populus t	0.870	0.143	0.412	3e-20
147825450	927	hypothetical protein VITISV_000086 [Viti	0.806	0.134	0.431	3e-20
224171913	208	predicted protein [Populus trichocarpa]	0.864	0.644	0.409	4e-20
224122724	189	predicted protein [Populus trichocarpa]	0.877	0.719	0.410	6e-20
359482792	922	PREDICTED: putative disease resistance p	0.832	0.139	0.406	9e-20
147772835	920	hypothetical protein VITISV_006248 [Viti	0.787	0.132	0.419	4e-19

>gi|255549784|ref|XP_002515943.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223544848|gb|EEF46363.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/153 (48%), Positives = 91/153 (59%), Gaps = 22/153 (14%)

Query: 1   MPPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLE 60
           +PPLGKLP LE LRI  M  V+  G EFLG+              SSSSSSS +AFPKL 
Sbjct: 606 LPPLGKLPFLENLRIWGMDGVQKAGLEFLGL-------------ESSSSSSSGIAFPKLI 652

Query: 61  KLDLGIMLQLEEW--DF---GKED----ITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLE 111
            L    M   E W  DF   G E+    ITIMPQ++SLS  +C KLK++PDQ LR  TL+
Sbjct: 653 NLRFMRMRNWEVWADDFIRMGDEEDSTKITIMPQLRSLSFAWCSKLKAVPDQFLRKATLQ 712

Query: 112 SLEIADVPIVEENFKKDTGKDWSKISHIPNILI 144
            L +   P ++  ++K  G+DW KISHIPNI I
Sbjct: 713 ELTLTCSPELKRAYQKGIGQDWHKISHIPNIKI 745

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108947192|gb|ABG23942.1| putative NBS-LRR disease resistance protein [Malus floribunda]

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 85/154 (55%), Gaps = 19/154 (12%)

Query: 1   MPPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLE 60
           +PPLGKLPSLE L +  M  VK VG EFLGI               +SS+SS + FPKL 
Sbjct: 108 LPPLGKLPSLETLILRNMKGVKKVGVEFLGI------------EKETSSASSCITFPKLN 155

Query: 61  KLDLGIMLQLEEWDFGKE------DITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLE 114
            L   +M   EEW   +E      DIT+MP + SL I  C +LK+LPD  L  T L++L+
Sbjct: 156 VLTFTVMEAWEEWKGVEEWKGEDSDITLMPCLSSLVIHNCPRLKTLPD-FLWKTPLQTLK 214

Query: 115 IADVPIVEENFKKDTGKDWSKISHIPNILISRRY 148
           I     + +  +K  GK+W KISHIP I I   Y
Sbjct: 215 IMYSGYLAQGHRKGRGKEWPKISHIPKITIFPEY 248

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115682|ref|XP_002332116.1| predicted protein [Populus trichocarpa] gi|222874936|gb|EEF12067.1| predicted protein [Populus trichocarpa]

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 97/157 (61%), Gaps = 13/157 (8%)

Query: 1   MPPLGKLPSLEILRIEEMVSVKMVGDEFLGIGIC--DHNHIHGTFSSSSSSSSSVVAFPK 58
           +PPLGKLPSLE L I  M  V  VG  FLG+G+   D      +    +SSS++++ FPK
Sbjct: 233 LPPLGKLPSLEELIINGMECVGKVGRGFLGLGVDGEDGEDSDISIGEMTSSSNTIITFPK 292

Query: 59  LEKLDLGIMLQLEEWDFG---KEDIT-------IMPQVKSLSIFFCEKLKSLPDQLLRST 108
           L+ L   +M + EEW+ G    ED T       IMP ++SL+I+ C KLK+LPD +L+ST
Sbjct: 293 LKSLSFYLMEEWEEWEGGEGGNEDKTNISISTIIMPSLRSLTIWGCPKLKALPDYVLQST 352

Query: 109 TLESLEIADVPIVEENFKKDTGKDWSKISHIPNILIS 145
           TLE LEI + PI+EE F+   GK W   SH PNI I+
Sbjct: 353 TLEQLEIYESPILEEEFEAG-GKGWPNASHTPNITIN 388

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769144|emb|CAN62986.1| hypothetical protein VITISV_033996 [Vitis vinifera]

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 88/146 (60%), Gaps = 21/146 (14%)

Query: 1   MPPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLE 60
           +PPLG+LP LE + I  M  VK +G EFLG                  +SS+V  FPKL+
Sbjct: 501 LPPLGQLPVLEKMGIWHMRGVKYIGSEFLG------------------ASSTV--FPKLK 540

Query: 61  KLDLGIMLQLEEWDFG-KEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119
           +L +  + +L++W    KE+ +IMP +  LS   C KL+ LPD +L+ TTL+ L+I   P
Sbjct: 541 ELTISRLDELKQWAIKEKEERSIMPCLNYLSTIGCPKLEELPDHVLQRTTLQKLDIRSSP 600

Query: 120 IVEENFKKDTGKDWSKISHIPNILIS 145
           I+++ ++KD G+DW KISHIP +  S
Sbjct: 601 ILKQRYQKDIGEDWHKISHIPEVKYS 626

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115686|ref|XP_002332117.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222874937|gb|EEF12068.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 91/165 (55%), Gaps = 30/165 (18%)

Query: 1   MPPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFS---SSSSSSSSVVAFP 57
           +P LGKLPSLE L++  M  V  VG EFLG+G+   +      S    +SSSS++++AFP
Sbjct: 781 LPALGKLPSLEELKVRGMRCVGRVGREFLGLGVDCEDGEDSDISIGEMTSSSSNTIIAFP 840

Query: 58  KLEKLDLGIMLQLEEWDF--------------GKEDITI----MPQVKSLSIFFCEKLKS 99
           KL+ L          WD                K +I+I    MP ++SL I +C KLK+
Sbjct: 841 KLKSLTF--------WDMGKWEEWEGGEGGNEDKTNISISTIIMPSLRSLEIRWCSKLKA 892

Query: 100 LPDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILI 144
           LPD +L+S+TLE L+I D PI+   FK   GK W   SH PNI I
Sbjct: 893 LPDYVLQSSTLEQLKIIDNPIIGAQFKA-GGKGWPNASHTPNITI 936

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147825450|emb|CAN71072.1| hypothetical protein VITISV_000086 [Vitis vinifera]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 87/146 (59%), Gaps = 21/146 (14%)

Query: 1   MPPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLE 60
           +P LG+LP LE L I  M  VK +G EFLG                  SSS+V  FPKL+
Sbjct: 800 LPLLGQLPVLEKLDIWGMDGVKYIGSEFLG------------------SSSTV--FPKLK 839

Query: 61  KLDLGIMLQLEEWDF-GKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119
           +L++  M +L++W+  GKE+ +IMP +  L   FC KL+ LPD +L+ T L+ L I D P
Sbjct: 840 ELNISRMDELKQWEIKGKEERSIMPCLNHLRTEFCPKLEGLPDHVLQRTPLQKLYIIDSP 899

Query: 120 IVEENFKKDTGKDWSKISHIPNILIS 145
           I+E  ++KD G+D  KISHIP +  S
Sbjct: 900 ILERRYRKDIGEDRHKISHIPEVKYS 925

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224171913|ref|XP_002339586.1| predicted protein [Populus trichocarpa] gi|222831818|gb|EEE70295.1| predicted protein [Populus trichocarpa]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 95/154 (61%), Gaps = 20/154 (12%)

Query: 1   MPPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLE 60
           +PPLG+LP+LE L +  +   ++ G  FLGI    + +I      S    + V AFPKL+
Sbjct: 60  LPPLGRLPNLESLSLTRLKLRRLDGG-FLGIENVANTNI------SEGEIARVTAFPKLK 112

Query: 61  KLDLGIMLQLEEWD-----FGKED------ITIMPQVKSLSIFFCEKLKSLPDQLLRSTT 109
           KLD+  ++Q+EEWD      G+ED      I+IMPQ++ L I  C  L++LPD +L +  
Sbjct: 113 KLDILFLVQVEEWDGIERRVGEEDATTTSIISIMPQLRELLIVNCPLLRALPDYVL-AAP 171

Query: 110 LESLEIADVPIVEENF-KKDTGKDWSKISHIPNI 142
           L++LEI+  PI+ + + K++ G+DW KISH PNI
Sbjct: 172 LQALEISGCPILRKRYGKEEMGEDWQKISHFPNI 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122724|ref|XP_002318910.1| predicted protein [Populus trichocarpa] gi|222859583|gb|EEE97130.1| predicted protein [Populus trichocarpa]

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 96/156 (61%), Gaps = 20/156 (12%)

Query: 1   MPPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLE 60
           +PPLG+LP+LE L +  +   ++ G  FLGI    + +I      S    + V AFPKL+
Sbjct: 40  LPPLGRLPNLESLSLTRLKLRRLDGG-FLGIENVANTNI------SEGEIARVTAFPKLK 92

Query: 61  KLDLGIMLQLEEWD-----FGKED------ITIMPQVKSLSIFFCEKLKSLPDQLLRSTT 109
           KLD+  ++Q+EEWD      G+ED      I+IMPQ++ L I  C  L++LPD +L +  
Sbjct: 93  KLDILFLVQVEEWDGIERRVGEEDATTTSIISIMPQLRELLIVNCPLLRALPDYVL-AAP 151

Query: 110 LESLEIADVPIVEENF-KKDTGKDWSKISHIPNILI 144
           L++LEI+  PI+ + + K++ G+DW KISHIP I I
Sbjct: 152 LQALEISGCPILRKRYGKEEMGEDWQKISHIPKISI 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482792|ref|XP_002268589.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 88/150 (58%), Gaps = 21/150 (14%)

Query: 1   MPPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLE 60
           +PPLG+LP LE L I  M  V+ +G EFLG                  SSS+V  FPKL+
Sbjct: 793 LPPLGQLPILEELGILNMHGVQYIGSEFLG------------------SSSTV--FPKLK 832

Query: 61  KLDLGIMLQLEEWDFG-KEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119
           KL +  M +L++W+   KE+ +IMP +  L++  C KL+ LPD +L+ T L+ L I   P
Sbjct: 833 KLRISNMKELKQWEIKEKEERSIMPCLNDLTMLACPKLEGLPDHMLQRTPLQKLYIKYSP 892

Query: 120 IVEENFKKDTGKDWSKISHIPNILISRRYE 149
           I+E  ++KD G+D  KISHIP +  S  ++
Sbjct: 893 ILERRYRKDIGEDGHKISHIPEVKYSYSWD 922

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772835|emb|CAN71670.1| hypothetical protein VITISV_006248 [Vitis vinifera]

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 86/143 (60%), Gaps = 21/143 (14%)

Query: 1   MPPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLE 60
           +PPLG+LP LE L I +M  VK +G EFLG                  SSS+V  FPKL+
Sbjct: 793 LPPLGQLPVLEELGIWKMYGVKCIGSEFLG------------------SSSTV--FPKLK 832

Query: 61  KLDLGIMLQLEEWDFG-KEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119
           +L +  + +L++W+   KE+ +IMP +  L +  C KL+ LPD +L+ TTL+ L I   P
Sbjct: 833 ELAISGLDELKQWEIKEKEERSIMPCLNHLIMRGCPKLEGLPDHVLQRTTLQILNIRSSP 892

Query: 120 IVEENFKKDTGKDWSKISHIPNI 142
           I+E  ++KD G+D  KISHIP +
Sbjct: 893 ILERRYRKDIGEDRHKISHIPQV 915

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.529	0.091	0.367	1.6e-08
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.541	0.092	0.356	1.2e-06
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.541	0.092	0.333	8.5e-06
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.522	0.077	0.367	1.3e-05
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.522	0.077	0.367	1.3e-05
TAIR|locus:2037639	907	AT1G58390 "AT1G58390" [Arabido	0.503	0.085	0.355	2.9e-05
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.522	0.079	0.344	3.3e-05
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.522	0.079	0.344	3.3e-05
TAIR|locus:2025916	906	AT1G59780 "AT1G59780" [Arabido	0.535	0.091	0.329	3.7e-05

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
 Identities = 32/87 (36%), Positives = 49/87 (56%)

Query:    56 FPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEI 115
             FP+L  L +    +LEEW   +     MP ++ L I  CEKL+ LPD L   T+L+ L+I
Sbjct:   809 FPQLRALQISEQSELEEWIVEEGS---MPCLRDLIIHSCEKLEELPDGLKYVTSLKELKI 865

Query:   116 ADVPIVEENFKKDTGKDWSKISHIPNI 142
               +    E  +K  G+D+ K+ HIP++
Sbjct:   866 EGMK--REWKEKLVGEDYYKVQHIPDV 890

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 31/87 (35%), Positives = 50/87 (57%)

Query:    56 FPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEI 115
             FP+L  L +    +LEEW   +     MP +++L+I  CEKLK LPD L   T+L+ L+I
Sbjct:   818 FPQLCALGISGESELEEWIVEEGS---MPCLRTLTIHDCEKLKELPDGLKYITSLKELKI 874

Query:   116 ADVPIVEENFKKDTGKDWSKISHIPNI 142
              ++    +      G+D+ K+ HIP++
Sbjct:   875 REMKREWKEKLVPGGEDYYKVQHIPDV 901

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 8.5e-06, P = 8.5e-06
 Identities = 29/87 (33%), Positives = 50/87 (57%)

Query:    56 FPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEI 115
             FP+L  +++    +LEEW   +     MP +++L+I  C+KLK LPD L   T+L+ L+I
Sbjct:   818 FPQLCVIEISKESELEEWIVEEGS---MPCLRTLTIDDCKKLKELPDGLKYITSLKELKI 874

Query:   116 ADVPIVEENFKKDTGKDWSKISHIPNI 142
               +    +      G+D+ K+ HIP++
Sbjct:   875 EGMKREWKEKLVPGGEDYYKVQHIPDV 901

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 32/87 (36%), Positives = 50/87 (57%)

Query:    56 FPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEI 115
             FP+L+ L+L  + + EEW    ED + MP + +L I+ C KLK LPD L    +L++L  
Sbjct:   966 FPQLQNLELNELEEWEEWIV--EDGS-MPLLHTLRIWNCPKLKQLPDGLRFIYSLKNLT- 1021

Query:   116 ADVPIVEENFKKDTGKDWSKISHIPNI 142
               VP   +      G+D+ K+ HIP++
Sbjct:  1022 --VPKRWKKRLSKGGEDYYKVQHIPSV 1046

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 32/87 (36%), Positives = 50/87 (57%)

Query:    56 FPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEI 115
             FP+L+ L+L  + + EEW    ED + MP + +L I+ C KLK LPD L    +L++L  
Sbjct:   966 FPQLQNLELNELEEWEEWIV--EDGS-MPLLHTLRIWNCPKLKQLPDGLRFIYSLKNLT- 1021

Query:   116 ADVPIVEENFKKDTGKDWSKISHIPNI 142
               VP   +      G+D+ K+ HIP++
Sbjct:  1022 --VPKRWKKRLSKGGEDYYKVQHIPSV 1046

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 32/90 (35%), Positives = 54/90 (60%)

Query:    56 FPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEI 115
             FP+L+KL++  + + EEW   +E    MP +++LSI  CE+LK +PD L     + SLE+
Sbjct:   819 FPQLKKLEIVGLNKWEEW-LVEEGS--MPLLETLSILDCEELKEIPDGL---RFIYSLEL 872

Query:   116 ADVPIVEENFKKDT---GKDWSKISHIPNI 142
                 ++   +KK     G+D+ K+ HIP++
Sbjct:   873 V---MLGTRWKKKFSVGGEDYYKVQHIPSV 899

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 30/87 (34%), Positives = 52/87 (59%)

Query:    56 FPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEI 115
             FP+L+KL +    +LEEW+    +   MP + +L I  C KLK LPD L    +L++L+I
Sbjct:   913 FPQLQKLSI---YRLEEWEEWIVEQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLKNLKI 969

Query:   116 ADVPIVEENFKKDTGKDWSKISHIPNI 142
             ++    +E   +  G+++ K+ HIP++
Sbjct:   970 SER--WKERLSEG-GEEYYKVQHIPSV 993

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 30/87 (34%), Positives = 52/87 (59%)

Query:    56 FPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEI 115
             FP+L+KL +    +LEEW+    +   MP + +L I  C KLK LPD L    +L++L+I
Sbjct:   913 FPQLQKLSI---YRLEEWEEWIVEQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLKNLKI 969

Query:   116 ADVPIVEENFKKDTGKDWSKISHIPNI 142
             ++    +E   +  G+++ K+ HIP++
Sbjct:   970 SER--WKERLSEG-GEEYYKVQHIPSV 993

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 29/88 (32%), Positives = 49/88 (55%)

Query:    56 FPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEI 115
             FP L +L++  +  LEEW   +     MP + +L I  C+KLK +PD L   ++L+ L I
Sbjct:   801 FPPLHRLEIWGLDALEEWIVEEGS---MPLLHTLHIVDCKKLKEIPDGLRFISSLKELAI 857

Query:   116 -ADVPIVEENFKKDTGKDWSKISHIPNI 142
               +  + ++   K  G+D+ K+ H+P I
Sbjct:   858 RTNEKVFQKKVSKG-GEDYYKMQHVPLI 884


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.141   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      155       146   0.00079  103 3  11 22  0.47    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  147 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.61u 0.12s 14.73t   Elapsed:  00:00:01
  Total cpu time:  14.61u 0.12s 14.73t   Elapsed:  00:00:01
  Start:  Mon May 20 23:22:00 2013   End:  Mon May 20 23:22:01 2013

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01930014 hypothetical protein (388 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.69
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.64
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.73
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.67
PRK15386	426	type III secretion protein GogB; Provisional	97.56
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.31
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.21
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.92
PRK15386	426	type III secretion protein GogB; Provisional	96.83
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.46
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.38
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.53
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	95.19
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	95.13
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	95.12
PLN03150	623	hypothetical protein; Provisional	94.95
KOG0472	565	consensus Leucine-rich repeat protein [Function un	94.38
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.29
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.23
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	93.83
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	93.81
PLN03150	623	hypothetical protein; Provisional	93.64
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	93.19
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	93.12
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	93.02
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.01
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	92.9
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.06
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	92.02
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	91.97
KOG0472	565	consensus Leucine-rich repeat protein [Function un	91.84
KOG4341	483	consensus F-box protein containing LRR [General fu	91.66
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	91.26
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	89.22
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	89.07
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	87.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	87.19
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	87.0
KOG1947	482	consensus Leucine rich repeat proteins, some prote	86.14
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	84.72
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	84.65
KOG4237	498	consensus Extracellular matrix protein slit, conta	84.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	81.95

>PLN03210 Resistant to P

Probab=98.69  E-value=4.8e-08  Score=89.80  Aligned_cols=115  Identities=18%  Similarity=0.244  Sum_probs=79.8

Q ss_pred             CCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCC--------
Q 031657            7 LPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKE--------   78 (155)
Q Consensus         7 L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~--------   78 (155)
                      .++|++|.+++|+.+..+|..+.....+..+.+.+|..+..++..  ..+++|+.|.+++|.+++.++....        
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls  854 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--INLESLESLDLSGCSRLRTFPDISTNISDLNLS  854 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC--CCccccCEEECCCCCccccccccccccCEeECC
Confidence            356777777777766666665554445556666666666655532  2566777777777666554431100        


Q ss_pred             ---------ccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCcchhh
Q 031657           79 ---------DITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEE  123 (155)
Q Consensus        79 ---------~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~~l~~  123 (155)
                               ....+++|+.|.+.+|++|+.+|..+..++.|+.+.+++|++|..
T Consensus       855 ~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~  908 (1153)
T PLN03210        855 RTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE  908 (1153)
T ss_pred             CCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence                     012688999999999999999999888899999999999997764

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.64  E-value=7.8e-08  Score=88.43  Aligned_cols=65  Identities=14%  Similarity=0.154  Sum_probs=35.1

Q ss_pred             CCCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcc
Q 031657            2 PPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIML   68 (155)
Q Consensus         2 p~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~   68 (155)
                      |.++.+++|++|.+.+|..+..++..+.....+..+.+.+|..+.+.+..  ..+++|+.|.+.+|.
T Consensus       651 p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        651 PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCS  715 (1153)
T ss_pred             CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCCC
Confidence            44566677777777777766666655443344444555555555544431  134444444444443

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.73  E-value=7.9e-05  Score=67.33  Aligned_cols=37  Identities=14%  Similarity=0.193  Sum_probs=16.4

Q ss_pred             cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c  118 (155)
                      .+++|+.|.+..|.-...+|..+.++++|+.|.++++
T Consensus       234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  270 (968)
T PLN00113        234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN  270 (968)
T ss_pred             cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence            3444555555444322234444444444555544443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.67  E-value=0.00013  Score=65.98  Aligned_cols=62  Identities=16%  Similarity=0.105  Sum_probs=35.5

Q ss_pred             CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|++|++.++.-...++...+   .+++|+.|.+..+.-...+|..+.++++|+.|++++|.
T Consensus       186 ~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  247 (968)
T PLN00113        186 NLTSLEFLTLASNQLVGQIPRELG---QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN  247 (968)
T ss_pred             hCcCCCeeeccCCCCcCcCChHHc---CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence            344555555544432222332222   56677777777764444667766677788888777664

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.56  E-value=0.00012  Score=60.72  Aligned_cols=100  Identities=18%  Similarity=0.190  Sum_probs=64.4

Q ss_pred             CCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCc
Q 031657            6 KLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQ   85 (155)
Q Consensus         6 ~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~   85 (155)
                      .+.++++|.|++| .++.+|. + . ..+..+.+.+|.++++.+..   -.++|+.|.+.+|.++..++.         +
T Consensus        50 ~~~~l~~L~Is~c-~L~sLP~-L-P-~sLtsL~Lsnc~nLtsLP~~---LP~nLe~L~Ls~Cs~L~sLP~---------s  113 (426)
T PRK15386         50 EARASGRLYIKDC-DIESLPV-L-P-NELTEITIENCNNLTTLPGS---IPEGLEKLTVCHCPEISGLPE---------S  113 (426)
T ss_pred             HhcCCCEEEeCCC-CCcccCC-C-C-CCCcEEEccCCCCcccCCch---hhhhhhheEccCccccccccc---------c
Confidence            3578889999988 7888862 2 2 24566778888888777632   236889999998887776553         2


Q ss_pred             ccEEeec--CCccCcCCCcCCCC------------------CCCcCeEEEecCcch
Q 031657           86 VKSLSIF--FCEKLKSLPDQLLR------------------STTLESLEIADVPIV  121 (155)
Q Consensus        86 L~~L~i~--~C~~L~~lp~~~~~------------------l~~L~~L~i~~c~~l  121 (155)
                      |+.|.+.  .|..+..+|.++..                  .++|+.|.|.+|..+
T Consensus       114 Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        114 VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI  169 (426)
T ss_pred             cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence            3333332  23344555543322                  257888999888744

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.31  E-value=0.00071  Score=40.74  Aligned_cols=18  Identities=22%  Similarity=0.381  Sum_probs=9.3

Q ss_pred             CCCceeeecccccceeeCc
Q 031657            8 PSLEILRIEEMVSVKMVGD   26 (155)
Q Consensus         8 ~~L~~L~i~~~~~l~~l~~   26 (155)
                      |+|++|.+.++ ++..++.
T Consensus         1 p~L~~L~l~~n-~l~~i~~   18 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPP   18 (61)
T ss_dssp             TTESEEEETSS-TESEECT
T ss_pred             CcCcEEECCCC-CCCccCH
Confidence            35555555555 4555543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.21  E-value=0.00087  Score=40.33  Aligned_cols=59  Identities=25%  Similarity=0.366  Sum_probs=45.9

Q ss_pred             CCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecCc
Q 031657           57 PKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVP  119 (155)
Q Consensus        57 ~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~  119 (155)
                      |+|++|+++++ ++..++.+.-  ..+++|+.|.+..+ +++.++. .+.++++|+.|.++++.
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f--~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSF--SNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTT--TTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHH--cCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            57889999887 7888875432  26899999999965 6888776 45779999999998764

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.92  E-value=0.00012  Score=54.23  Aligned_cols=106  Identities=22%  Similarity=0.227  Sum_probs=61.1

Q ss_pred             CCCCCCCceeeecccccceeeCcccccCcccccccccCc--cccCCCCCCcccCCCCcceeeccCc--------------
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGT--FSSSSSSSSSVVAFPKLEKLDLGIM--------------   67 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~f~~L~~L~l~~~--------------   67 (155)
                      +..|.+|+.|++++. +++.+|..+....   .+++-+.  ..+..++. ++++||.|+.|++..-              
T Consensus        52 ia~l~nlevln~~nn-qie~lp~~issl~---klr~lnvgmnrl~~lpr-gfgs~p~levldltynnl~e~~lpgnff~m  126 (264)
T KOG0617|consen   52 IAELKNLEVLNLSNN-QIEELPTSISSLP---KLRILNVGMNRLNILPR-GFGSFPALEVLDLTYNNLNENSLPGNFFYM  126 (264)
T ss_pred             HHHhhhhhhhhcccc-hhhhcChhhhhch---hhhheecchhhhhcCcc-ccCCCchhhhhhccccccccccCCcchhHH
Confidence            667777777777754 5676665443221   1111111  12222222 2678888888877431              


Q ss_pred             ----------ccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657           68 ----------LQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        68 ----------~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c  118 (155)
                                ...|.++.+.+   .++.|+.|.+.+- .|-++|..+..++.|++|+|.+-
T Consensus       127 ~tlralyl~dndfe~lp~dvg---~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  127 TTLRALYLGDNDFEILPPDVG---KLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             HHHHHHHhcCCCcccCChhhh---hhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcccc
Confidence                      11222233333   6777777777774 57778887777888888888763

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.83  E-value=0.0044  Score=51.52  Aligned_cols=101  Identities=18%  Similarity=0.263  Sum_probs=60.2

Q ss_pred             CCC-CCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccC--cccCcccccCCCcc--
Q 031657            6 KLP-SLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGI--MLQLEEWDFGKEDI--   80 (155)
Q Consensus         6 ~L~-~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~--~~~L~~~~~~~~~~--   80 (155)
                      .+| +|++|.|.+|.++..++..+ . ..+..+.+.+|..+..++.       +|+.|.+.+  +..+..+|.+....  
T Consensus        69 ~LP~sLtsL~Lsnc~nLtsLP~~L-P-~nLe~L~Ls~Cs~L~sLP~-------sLe~L~L~~n~~~~L~~LPssLk~L~I  139 (426)
T PRK15386         69 VLPNELTEITIENCNNLTTLPGSI-P-EGLEKLTVCHCPEISGLPE-------SVRSLEIKGSATDSIKNVPNGLTSLSI  139 (426)
T ss_pred             CCCCCCcEEEccCCCCcccCCchh-h-hhhhheEccCccccccccc-------ccceEEeCCCCCcccccCcchHhheec
Confidence            444 69999999999998887543 2 2345667777766665542       355554432  22333333211110  


Q ss_pred             ------------ccC-CcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657           81 ------------TIM-PQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        81 ------------~~~-p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c  118 (155)
                                  ..+ ++|+.|.+..|..+ .+|..+.  .+|+.|.++.+
T Consensus       140 ~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        140 NSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence                        023 48999999999755 3555433  57777777654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.46  E-value=0.00088  Score=49.78  Aligned_cols=111  Identities=19%  Similarity=0.306  Sum_probs=63.7

Q ss_pred             CCCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccc
Q 031657            2 PPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDIT   81 (155)
Q Consensus         2 p~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~   81 (155)
                      |.|-.+.+.+.|.+++. .+..+++.+-....+..++..+. -+..++. ++..+|+|+.|.+. |..|..++.+.|   
T Consensus        27 ~gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nn-qie~lp~-~issl~klr~lnvg-mnrl~~lprgfg---   99 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNN-QIEELPT-SISSLPKLRILNVG-MNRLNILPRGFG---   99 (264)
T ss_pred             ccccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccc-hhhhcCh-hhhhchhhhheecc-hhhhhcCccccC---
Confidence            34556667777888765 45555543321111111111111 1112221 25678888888873 677777777766   


Q ss_pred             cCCcccEEeecCCc------------------------cCcCCCcCCCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCE------------------------KLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~------------------------~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      +||.|+.|.+..-.                        ..+.+|..+.++++|+.|.+.+-.
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd  161 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND  161 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc
Confidence            78888877665421                        233356777778888888887654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.38  E-value=0.0014  Score=48.37  Aligned_cols=84  Identities=20%  Similarity=0.313  Sum_probs=31.3

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCc--CCCCCCCcCeEEEecCcchhhhhccCCC
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPD--QLLRSTTLESLEIADVPIVEENFKKDTG  130 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~--~~~~l~~L~~L~i~~c~~l~~~~~~~~~  130 (155)
                      ...+++|+.|.+.+ ..+..+....  ...+|+|+.|.+.+. ++..+-+  .+..++.|+.|.+.+.|--.     ...
T Consensus        60 l~~L~~L~~L~L~~-N~I~~i~~~l--~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-----~~~  130 (175)
T PF14580_consen   60 LPGLPRLKTLDLSN-NRISSISEGL--DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCE-----KKN  130 (175)
T ss_dssp             ----TT--EEE--S-S---S-CHHH--HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG-----STT
T ss_pred             ccChhhhhhcccCC-CCCCccccch--HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccc-----hhh
Confidence            34577888887765 2343332111  015899999998764 5655433  34458889999998877311     111


Q ss_pred             CCcCcccccCeeEec
Q 031657          131 KDWSKISHIPNILIS  145 (155)
Q Consensus       131 ~~w~~i~~i~~i~~~  145 (155)
                      ..-..|.++|++++-
T Consensus       131 YR~~vi~~lP~Lk~L  145 (175)
T PF14580_consen  131 YRLFVIYKLPSLKVL  145 (175)
T ss_dssp             HHHHHHHH-TT-SEE
T ss_pred             HHHHHHHHcChhhee
Confidence            122446667776554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.53  E-value=0.013  Score=33.13  Aligned_cols=35  Identities=23%  Similarity=0.445  Sum_probs=21.9

Q ss_pred             CcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           84 PQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        84 p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      +.|+.|.+.++ +++.+|..+.++++|+.|++++++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC
Confidence            35666777665 566666656667777777777654

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=95.19  E-value=0.0014  Score=57.20  Aligned_cols=35  Identities=14%  Similarity=0.324  Sum_probs=21.6

Q ss_pred             cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEec
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIAD  117 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~  117 (155)
                      .+.+|..+.+. |.+|..+|+.+.++++|+.|.+++
T Consensus       220 ~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~  254 (1255)
T KOG0444|consen  220 DLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSG  254 (1255)
T ss_pred             hhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCc
Confidence            45555555543 346666777766677777776665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=95.13  E-value=0.0032  Score=56.58  Aligned_cols=84  Identities=18%  Similarity=0.241  Sum_probs=42.8

Q ss_pred             CCCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccc
Q 031657            2 PPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDIT   81 (155)
Q Consensus         2 p~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~   81 (155)
                      |.|-.+++|+.|+++.. .+..+|...                        ...|+.|++|.++| .+|+.++....   
T Consensus       377 p~l~~~~hLKVLhLsyN-rL~~fpas~------------------------~~kle~LeeL~LSG-NkL~~Lp~tva---  427 (1081)
T KOG0618|consen  377 PVLVNFKHLKVLHLSYN-RLNSFPASK------------------------LRKLEELEELNLSG-NKLTTLPDTVA---  427 (1081)
T ss_pred             hhhccccceeeeeeccc-ccccCCHHH------------------------HhchHHhHHHhccc-chhhhhhHHHH---
Confidence            55677888888888764 355554432                        22456666666655 33444443322   


Q ss_pred             cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEe
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIA  116 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~  116 (155)
                      .+++|++|+.+. ..|..+|+-. .++.|+.++++
T Consensus       428 ~~~~L~tL~ahs-N~l~~fPe~~-~l~qL~~lDlS  460 (1081)
T KOG0618|consen  428 NLGRLHTLRAHS-NQLLSFPELA-QLPQLKVLDLS  460 (1081)
T ss_pred             hhhhhHHHhhcC-Cceeechhhh-hcCcceEEecc
Confidence            344444444333 1344444222 24444444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=95.12  E-value=0.01  Score=53.83  Aligned_cols=111  Identities=19%  Similarity=0.099  Sum_probs=57.2

Q ss_pred             CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM   83 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~   83 (155)
                      |..+|.|+.|.+++|.++..+|..+...-.+.-+++ ..+.+..+|. +...|.+|.+|.+.....++.++....   .+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L-~~t~I~~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~---~L  641 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL-SDTGISHLPS-GLGNLKKLIYLNLEVTGRLESIPGILL---EL  641 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc-cCCCccccch-HHHHHHhhheeccccccccccccchhh---hc
Confidence            567888899999888888888765432111110000 0112222222 144556666666666666665532221   36


Q ss_pred             CcccEEeecCCc-cC-cCCCcCCCCCCCcCeEEEecCc
Q 031657           84 PQVKSLSIFFCE-KL-KSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        84 p~L~~L~i~~C~-~L-~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ++|+.|.+-.-. .. ...-..+.++.+|+.+.+..+.
T Consensus       642 ~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s  679 (889)
T KOG4658|consen  642 QSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS  679 (889)
T ss_pred             ccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence            777777664321 11 1112233456666666665544

>PLN03150 hypothetical protein; Provisional

Probab=94.95  E-value=0.047  Score=47.75  Aligned_cols=15  Identities=20%  Similarity=0.364  Sum_probs=7.5

Q ss_pred             CCCCCCCceeeeccc
Q 031657            4 LGKLPSLEILRIEEM   18 (155)
Q Consensus         4 l~~L~~L~~L~i~~~   18 (155)
                      +++|++|+.|.++++
T Consensus       438 i~~L~~L~~L~Ls~N  452 (623)
T PLN03150        438 ISKLRHLQSINLSGN  452 (623)
T ss_pred             HhCCCCCCEEECCCC
Confidence            344555555555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.38  E-value=0.0032  Score=52.22  Aligned_cols=110  Identities=25%  Similarity=0.318  Sum_probs=68.8

Q ss_pred             CCC-CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCc
Q 031657            1 MPP-LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKED   79 (155)
Q Consensus         1 Lp~-l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~   79 (155)
                      +|+ ++-|.+|+.|++.+. .++.+| +|.+......+++.. ..+.-.+-.-..++++|..|++++ .+++++|.+.- 
T Consensus       198 lP~~lg~l~~L~~LyL~~N-ki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~c-  272 (565)
T KOG0472|consen  198 LPPELGGLESLELLYLRRN-KIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEIC-  272 (565)
T ss_pred             CChhhcchhhhHHHHhhhc-ccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccc-cccccCchHHH-
Confidence            355 777888888888765 466665 443322222221111 001111111133678888888876 56788876654 


Q ss_pred             cccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           80 ITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        80 ~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                        .+.+|+.|++.+- .+.++|-.+.++ .|+.|.+.+-|
T Consensus       273 --lLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  273 --LLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             --HhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence              5778888888874 688899888878 88888888877

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.29  E-value=0.0047  Score=46.61  Aligned_cols=66  Identities=20%  Similarity=0.413  Sum_probs=51.6

Q ss_pred             CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCC-cCCCCCCCcCeEEEecCcch
Q 031657           55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLP-DQLLRSTTLESLEIADVPIV  121 (155)
Q Consensus        55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp-~~~~~l~~L~~L~i~~c~~l  121 (155)
                      .+++++.|.+.+|..+..|..+.-. +.+++|+.|.|..|+++++-- .++.++++|+.|.+++.+.+
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence            5678888999999999888744321 168999999999999988533 24557899999999998844

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.23  E-value=0.009  Score=52.87  Aligned_cols=57  Identities=19%  Similarity=0.229  Sum_probs=26.0

Q ss_pred             CCCCcceeeccCcccCc-ccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEe
Q 031657           55 AFPKLEKLDLGIMLQLE-EWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIA  116 (155)
Q Consensus        55 ~f~~L~~L~l~~~~~L~-~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~  116 (155)
                      -||+|++|.+.+..--. ++..-..   .||+|..|+|.++ +++.+ .|+.++.+|+.|.+.
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~---sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mr  203 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCA---SFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMR  203 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhh---ccCccceeecCCC-CccCc-HHHhccccHHHHhcc
Confidence            46777777665532111 1111111   5666666666655 34433 333334444444333

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=93.83  E-value=0.16  Score=45.72  Aligned_cols=31  Identities=29%  Similarity=0.289  Sum_probs=15.3

Q ss_pred             CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEec
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIAD  117 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~  117 (155)
                      +++|+.|.+.++ +++.+|..   ..+|+.|.+++
T Consensus       301 p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~  331 (788)
T PRK15387        301 PPGLQELSVSDN-QLASLPAL---PSELCKLWAYN  331 (788)
T ss_pred             ccccceeECCCC-ccccCCCC---ccccccccccc
Confidence            345666666554 45555542   23444444444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=93.81  E-value=0.0097  Score=49.61  Aligned_cols=37  Identities=14%  Similarity=0.181  Sum_probs=23.9

Q ss_pred             cCCcccEEeecCCccCcCCC--cCCCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKSLP--DQLLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp--~~~~~l~~L~~L~i~~c~  119 (155)
                      .+..|+.|.+.+-+ +..++  ....+++.|..|.+++|.
T Consensus       244 i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tg  282 (505)
T KOG3207|consen  244 ILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTG  282 (505)
T ss_pred             hhhHHhhccccCCc-ccccccccccccccchhhhhccccC
Confidence            56677777777754 33333  234468888888887765

>PLN03150 hypothetical protein; Provisional

Probab=93.64  E-value=0.12  Score=45.33  Aligned_cols=64  Identities=14%  Similarity=0.145  Sum_probs=44.4

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      +..+++|+.|.+.+..--..++...+   .+++|+.|.+..+.--..+|..+.++++|+.|+++++.
T Consensus       438 i~~L~~L~~L~Ls~N~l~g~iP~~~~---~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        438 ISKLRHLQSINLSGNSIRGNIPPSLG---SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHh---CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence            45678888888877543334554443   68888888888874333677777778888888887754

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=93.19  E-value=0.082  Score=38.95  Aligned_cols=108  Identities=21%  Similarity=0.269  Sum_probs=37.5

Q ss_pred             CC-CCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccC--cccCcccccCCCcc
Q 031657            4 LG-KLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGI--MLQLEEWDFGKEDI   80 (155)
Q Consensus         4 l~-~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~--~~~L~~~~~~~~~~   80 (155)
                      ++ .|.+|+.|+++++ .++.+. .+.....+..+.+++ ..+++....-...||+|++|.+.+  ..++..+..    .
T Consensus        37 L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~----L  109 (175)
T PF14580_consen   37 LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSNNKISDLNELEP----L  109 (175)
T ss_dssp             --TT-TT--EEE-TTS---S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--EEE-TTS---SCCCCGG----G
T ss_pred             hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcCCcCCChHHhHH----H
Confidence            44 5778888888876 355552 121111111221111 112222110012589999999865  233333321    2


Q ss_pred             ccCCcccEEeecCCccCcCCCc----CCCCCCCcCeEEEecCc
Q 031657           81 TIMPQVKSLSIFFCEKLKSLPD----QLLRSTTLESLEIADVP  119 (155)
Q Consensus        81 ~~~p~L~~L~i~~C~~L~~lp~----~~~~l~~L~~L~i~~c~  119 (155)
                      ..+|+|+.|.+.+.|= ...+.    -+.++|+|+.|+-....
T Consensus       110 ~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen  110 SSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             GG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred             HcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEcc
Confidence            2699999999998773 32232    12347788877655443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=93.12  E-value=0.13  Score=29.02  Aligned_cols=39  Identities=21%  Similarity=0.307  Sum_probs=26.1

Q ss_pred             CCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCC
Q 031657           57 PKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSL  100 (155)
Q Consensus        57 ~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~l  100 (155)
                      ++|++|++.+. +++.++....   .++.|+.|.+.++ .++.+
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~---~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELS---NLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGT---TCTTSSEEEETSS-CCSBE
T ss_pred             CcceEEEccCC-CCcccCchHh---CCCCCCEEEecCC-CCCCC
Confidence            46888888774 5666665333   7899999999887 45544

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=93.02  E-value=0.17  Score=45.35  Aligned_cols=54  Identities=22%  Similarity=0.426  Sum_probs=30.7

Q ss_pred             CCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           57 PKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        57 ~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ++|+.|.+.++ .+..++..     ..++|+.|.+.++ ++..+|..+  .+.|+.|++++|.
T Consensus       325 ~sL~~L~Ls~N-~Lt~LP~~-----l~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N~  378 (754)
T PRK15370        325 PGLKTLEAGEN-ALTSLPAS-----LPPELQVLDVSKN-QITVLPETL--PPTITTLDVSRNA  378 (754)
T ss_pred             ccceeccccCC-ccccCChh-----hcCcccEEECCCC-CCCcCChhh--cCCcCEEECCCCc
Confidence            45666666554 24444321     2356777777766 466666544  3567777776654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.01  E-value=0.0098  Score=44.89  Aligned_cols=70  Identities=17%  Similarity=0.147  Sum_probs=46.6

Q ss_pred             CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM   83 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~   83 (155)
                      |+.++.++.|.+.+|..+....-+..                       .+.+++|+.|++++|+.+.+.-...  ...|
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l-----------------------~~~~~~L~~L~lsgC~rIT~~GL~~--L~~l  175 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERL-----------------------GGLAPSLQDLDLSGCPRITDGGLAC--LLKL  175 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHh-----------------------cccccchheeeccCCCeechhHHHH--HHHh
Confidence            56677777777777765544332222                       2258999999999999887643221  2268


Q ss_pred             CcccEEeecCCccCc
Q 031657           84 PQVKSLSIFFCEKLK   98 (155)
Q Consensus        84 p~L~~L~i~~C~~L~   98 (155)
                      ++|+.|.+.+.+...
T Consensus       176 knLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  176 KNLRRLHLYDLPYVA  190 (221)
T ss_pred             hhhHHHHhcCchhhh
Confidence            888888887776543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=92.90  E-value=0.099  Score=47.63  Aligned_cols=88  Identities=20%  Similarity=0.184  Sum_probs=56.6

Q ss_pred             CCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCccee-eccCcccCcccccCCCccccCC
Q 031657            6 KLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKL-DLGIMLQLEEWDFGKEDITIMP   84 (155)
Q Consensus         6 ~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L-~l~~~~~L~~~~~~~~~~~~~p   84 (155)
                      -.|+|+.|.+..|..++.+.+..........               ....|.+++.+ .+.+.+.++.+.+..-   .++
T Consensus       768 f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~---------------~i~~f~~~~~l~~~~~l~~l~~i~~~~l---~~~  829 (889)
T KOG4658|consen  768 FAPHLTSLSLVSCRLLEDIIPKLKALLELKE---------------LILPFNKLEGLRMLCSLGGLPQLYWLPL---SFL  829 (889)
T ss_pred             ccCcccEEEEecccccccCCCHHHHhhhccc---------------EEecccccccceeeecCCCCceeEeccc---Ccc
Confidence            3578888888888777766543322211000               13467777777 4677777777665544   677


Q ss_pred             cccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657           85 QVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        85 ~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c  118 (155)
                      +|+.+.+..||++..+       |.+.++.|.+|
T Consensus       830 ~l~~~~ve~~p~l~~~-------P~~~~~~i~~~  856 (889)
T KOG4658|consen  830 KLEELIVEECPKLGKL-------PLLSTLTIVGC  856 (889)
T ss_pred             chhheehhcCcccccC-------ccccccceecc
Confidence            7999999999988864       44455666666

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.06  E-value=0.11  Score=23.29  Aligned_cols=16  Identities=31%  Similarity=0.513  Sum_probs=6.6

Q ss_pred             cccEEeecCCccCcCCC
Q 031657           85 QVKSLSIFFCEKLKSLP  101 (155)
Q Consensus        85 ~L~~L~i~~C~~L~~lp  101 (155)
                      +|+.|++.+|. |+.+|
T Consensus         2 ~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             T-SEEEETSS---SSE-
T ss_pred             ccCEEECCCCC-CCCCc
Confidence            45555555554 55443

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=92.02  E-value=0.061  Score=47.74  Aligned_cols=12  Identities=50%  Similarity=0.567  Sum_probs=8.1

Q ss_pred             CCCCCceeeecc
Q 031657            6 KLPSLEILRIEE   17 (155)
Q Consensus         6 ~L~~L~~L~i~~   17 (155)
                      .||+|+.|.|.+
T Consensus       146 ~LPsL~sL~i~~  157 (699)
T KOG3665|consen  146 MLPSLRSLVISG  157 (699)
T ss_pred             hCcccceEEecC
Confidence            567777777765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=91.97  E-value=0.4  Score=43.04  Aligned_cols=17  Identities=12%  Similarity=0.292  Sum_probs=8.8

Q ss_pred             CCceeeecccccceeeCc
Q 031657            9 SLEILRIEEMVSVKMVGD   26 (155)
Q Consensus         9 ~L~~L~i~~~~~l~~l~~   26 (155)
                      +|+.|.+.++ ++..++.
T Consensus       200 ~L~~L~Ls~N-~LtsLP~  216 (754)
T PRK15370        200 QITTLILDNN-ELKSLPE  216 (754)
T ss_pred             CCcEEEecCC-CCCcCCh
Confidence            4556666544 4555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.84  E-value=0.035  Score=46.27  Aligned_cols=62  Identities=23%  Similarity=0.267  Sum_probs=39.0

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c  118 (155)
                      +.+...|++|++.. ..++.++.+..  ..++++..|++++- +++++|.++.-+.+|..|++++-
T Consensus       224 f~gcs~L~Elh~g~-N~i~~lpae~~--~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN  285 (565)
T KOG0472|consen  224 FPGCSLLKELHVGE-NQIEMLPAEHL--KHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNN  285 (565)
T ss_pred             CCccHHHHHHHhcc-cHHHhhHHHHh--cccccceeeecccc-ccccCchHHHHhhhhhhhcccCC
Confidence            34445555555532 33444444433  15778888888774 78888887777777888877753

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=91.66  E-value=0.13  Score=42.83  Aligned_cols=127  Identities=17%  Similarity=0.192  Sum_probs=75.4

Q ss_pred             CCCCCceeeecccccceeeCcccccCc--ccccccccCccc-----cCCCCCCcccCCCCcceeeccCcccCccc-----
Q 031657            6 KLPSLEILRIEEMVSVKMVGDEFLGIG--ICDHNHIHGTFS-----SSSSSSSSVVAFPKLEKLDLGIMLQLEEW-----   73 (155)
Q Consensus         6 ~L~~L~~L~i~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~f~~L~~L~l~~~~~L~~~-----   73 (155)
                      +-++|+.|.+.+|..+...+....+.+  .+..+.+-.|+-     +.++    ..+.+.|+.|.+++|.....-     
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl----s~~C~~lr~lslshce~itD~gi~~l  393 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL----SRNCPRLRVLSLSHCELITDEGIRHL  393 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh----ccCCchhccCChhhhhhhhhhhhhhh
Confidence            457788888888876554433222211  111112222211     2222    336788999999887765432     


Q ss_pred             ccCCCccccCCcccEEeecCCccCcC-CCcCCCCCCCcCeEEEecCcchhhhhccCCCCCcCcccccCeeEec
Q 031657           74 DFGKEDITIMPQVKSLSIFFCEKLKS-LPDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILIS  145 (155)
Q Consensus        74 ~~~~~~~~~~p~L~~L~i~~C~~L~~-lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~i~~~  145 (155)
                      ....   ..+..|+.+.+.+||.+.. .-+...+.++|+.+++.+|....+.--.      +..+|.|+|++.
T Consensus       394 ~~~~---c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~------~~~~~lp~i~v~  457 (483)
T KOG4341|consen  394 SSSS---CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS------RFATHLPNIKVH  457 (483)
T ss_pred             hhcc---ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH------HHHhhCccceeh
Confidence            2211   2577899999999998753 4445556789999999999865433211      235678877664

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=91.26  E-value=0.033  Score=48.99  Aligned_cols=42  Identities=17%  Similarity=0.272  Sum_probs=33.4

Q ss_pred             cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCcchhhh
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEEN  124 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~~l~~~  124 (155)
                      ..++|++|.+. |..|-.+|+++.-++.|+.|++.+-|+|..-
T Consensus       337 RC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVMP  378 (1255)
T KOG0444|consen  337 RCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVMP  378 (1255)
T ss_pred             hhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccCC
Confidence            56677777764 4578889999988999999999998887654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=89.22  E-value=0.25  Score=23.39  Aligned_cols=18  Identities=17%  Similarity=0.281  Sum_probs=15.1

Q ss_pred             CCceeeecccccceeeCcc
Q 031657            9 SLEILRIEEMVSVKMVGDE   27 (155)
Q Consensus         9 ~L~~L~i~~~~~l~~l~~~   27 (155)
                      +|++|.|++| .+..+|++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSS   18 (22)
T ss_dssp             TESEEEETSS-EESEEGTT
T ss_pred             CccEEECCCC-cCEeCChh
Confidence            5899999999 78888765

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=89.07  E-value=0.064  Score=41.92  Aligned_cols=36  Identities=22%  Similarity=0.248  Sum_probs=21.2

Q ss_pred             CCcccEEeecCCccCc-----CCCcCCCCCCCcCeEEEecCc
Q 031657           83 MPQVKSLSIFFCEKLK-----SLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~-----~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ++.|+.|.+.+|. +.     .+...+.++++|+.|.+++|+
T Consensus       192 ~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         192 NCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             CCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc
Confidence            3467777776663 32     223334456777777777765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=87.71  E-value=0.62  Score=40.86  Aligned_cols=58  Identities=17%  Similarity=0.309  Sum_probs=27.6

Q ss_pred             CCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecCcchhhhhccCCCCCcCcccccCeeEecc
Q 031657           83 MPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISR  146 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~i~~~~  146 (155)
                      +.+++.|++..- ++..+-+ ++..+++|+.|+++.- .    +.+-....|...+.+..+....
T Consensus       268 l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~N-a----I~rih~d~WsftqkL~~LdLs~  326 (873)
T KOG4194|consen  268 LEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYN-A----IQRIHIDSWSFTQKLKELDLSS  326 (873)
T ss_pred             ecccceeecccc-hhhhhhcccccccchhhhhccchh-h----hheeecchhhhcccceeEeccc
Confidence            334444444432 3444433 3445777777776642 1    1111233466666655554433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=87.19  E-value=0.12  Score=40.39  Aligned_cols=36  Identities=19%  Similarity=0.260  Sum_probs=21.9

Q ss_pred             CCcccEEeecCCccCc-----CCCcCCCCCCCcCeEEEecCc
Q 031657           83 MPQVKSLSIFFCEKLK-----SLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~-----~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ++.|+.|.+..|. +.     .++..+...++|++|.+++|.
T Consensus       164 ~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~  204 (319)
T cd00116         164 NRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNG  204 (319)
T ss_pred             CCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence            4567777777663 33     233333345688888888775

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=87.00  E-value=0.73  Score=41.60  Aligned_cols=55  Identities=20%  Similarity=0.360  Sum_probs=35.7

Q ss_pred             CCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           57 PKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        57 ~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ++|+.|++++. .+..++.      .+..|+.|.+.++ +++.+|..+.++++|..|.+++.+
T Consensus       402 s~L~~LdLS~N-~LssIP~------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        402 SELKELMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             cCCCEEEccCC-cCCCCCc------chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence            34555555543 2433331      2335667777664 578888888789999999998876

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=86.14  E-value=0.1  Score=42.94  Aligned_cols=66  Identities=21%  Similarity=0.278  Sum_probs=32.4

Q ss_pred             CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcC--CCcCCCCCCCcCeEEEecCcch
Q 031657           55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKS--LPDQLLRSTTLESLEIADVPIV  121 (155)
Q Consensus        55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~--lp~~~~~l~~L~~L~i~~c~~l  121 (155)
                      ..++|+.|.+..+..+...-...- ....++|+.|.+..|+.++.  +-.....++.|++|.++.|..+
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l-~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSAL-ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHH-HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            345566666655554332211100 00255667766666665432  2222234566777777766654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=84.72  E-value=0.13  Score=44.98  Aligned_cols=14  Identities=36%  Similarity=0.688  Sum_probs=8.7

Q ss_pred             CCCCCCCceeeecc
Q 031657            4 LGKLPSLEILRIEE   17 (155)
Q Consensus         4 l~~L~~L~~L~i~~   17 (155)
                      +.+||.|+.|.+..
T Consensus       217 Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  217 FKRLPKLESLDLNR  230 (873)
T ss_pred             hhhcchhhhhhccc
Confidence            45666777666643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=84.65  E-value=0.14  Score=41.23  Aligned_cols=63  Identities=21%  Similarity=0.202  Sum_probs=45.6

Q ss_pred             CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCc-CCCcCCCCCCCcCeEEEecCc
Q 031657           55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLK-SLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~-~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ..|.|..|+++++..|+.=.+..  ...|+.|++|.+..|..+. ..--.+...|+|..|++.+|-
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~--~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQE--FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hCCceeeeccccccccCchHHHH--HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            57899999999988887521111  1269999999999997653 111233457999999999985

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=84.17  E-value=0.048  Score=45.23  Aligned_cols=23  Identities=13%  Similarity=0.330  Sum_probs=17.4

Q ss_pred             CCCCCCCceeeecccccceeeCcc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDE   27 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~   27 (155)
                      ++.|++|+.|.+++. .++.|.++
T Consensus        87 F~~l~~LRrLdLS~N-~Is~I~p~  109 (498)
T KOG4237|consen   87 FKTLHRLRRLDLSKN-NISFIAPD  109 (498)
T ss_pred             ccchhhhceeccccc-chhhcChH
Confidence            788899999999875 56666543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=81.95  E-value=0.81  Score=38.53  Aligned_cols=13  Identities=23%  Similarity=0.268  Sum_probs=8.3

Q ss_pred             CCCCCceeeeccc
Q 031657            6 KLPSLEILRIEEM   18 (155)
Q Consensus         6 ~L~~L~~L~i~~~   18 (155)
                      -+++|+.|.+.+|
T Consensus       195 ~l~~lK~L~l~~C  207 (505)
T KOG3207|consen  195 LLSHLKQLVLNSC  207 (505)
T ss_pred             hhhhhheEEeccC
Confidence            3566667766666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.72
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.65
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.43
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.42
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.39
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.36
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.33
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.32
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.31
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.31
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.26
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.18
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.16
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.14
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.12
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.1
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.1
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.02
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.01
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.0
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.98
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.98
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.97
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.97
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.96
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.95
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.91
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.91
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.91
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.9
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.89
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.87
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.87
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.86
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.86
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.85
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.84
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.83
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.83
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.81
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.81
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.81
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.78
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.77
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.77
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.77
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.74
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.73
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.72
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.7
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.69
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.67
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.66
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.66
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.66
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.64
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.63
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.62
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.61
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.6
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.58
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.58
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.58
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.57
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.55
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.52
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.52
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.44
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.44
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.38
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.36
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.36
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.36
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.35
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.35
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.1
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	96.99
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	96.87
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	96.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.62
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	96.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.51
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.51
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.31
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.15
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	95.95
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	95.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	95.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	95.48
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.33
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.29
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	94.76
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	94.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	94.51
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	94.34
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	94.01
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	93.17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	93.09
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	92.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	92.02
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	91.36
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	90.76
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	88.91
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	85.96
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	82.31
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	82.1
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	81.12

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.72  E-value=3.7e-08  Score=77.34  Aligned_cols=112  Identities=23%  Similarity=0.248  Sum_probs=84.7

Q ss_pred             CCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCC
Q 031657            5 GKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMP   84 (155)
Q Consensus         5 ~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p   84 (155)
                      +.+++|++|.++++ .+..++..+.....+..+.+.++. ++..+. ....+++|++|+++++.....++...+   .++
T Consensus       180 ~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~---~l~  253 (328)
T 4fcg_A          180 QGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSALGP-AIHHLPKLEELDLRGCTALRNYPPIFG---GRA  253 (328)
T ss_dssp             EESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTT---CCC
T ss_pred             ccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcCch-hhccCCCCCEEECcCCcchhhhHHHhc---CCC
Confidence            35899999999987 566777665444444455555542 222222 266789999999999888888776655   789


Q ss_pred             cccEEeecCCccCcCCCcCCCCCCCcCeEEEecCcchh
Q 031657           85 QVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVE  122 (155)
Q Consensus        85 ~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~~l~  122 (155)
                      +|+.|.+.+|..+..+|..+.++++|+.|++++|+.+.
T Consensus       254 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS  291 (328)
T ss_dssp             CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred             CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence            99999999999889999888889999999999988554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.65  E-value=6.3e-08  Score=76.00  Aligned_cols=132  Identities=14%  Similarity=0.183  Sum_probs=91.6

Q ss_pred             CCCCCCCceeeecccccceeeCccccc---------CcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLG---------IGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWD   74 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~   74 (155)
                      +++|++|++|.+++|..+..++..+..         ...+..+.+.++ .++..+. ....+++|++|.+.++. +..++
T Consensus       146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~-~l~~l~~L~~L~L~~N~-l~~l~  222 (328)
T 4fcg_A          146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPA-SIANLQNLKSLKIRNSP-LSALG  222 (328)
T ss_dssp             GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCG-GGGGCTTCCEEEEESSC-CCCCC
T ss_pred             HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchH-hhcCCCCCCEEEccCCC-CCcCc
Confidence            788999999999999888888765532         223334444443 2333332 26688999999998753 55555


Q ss_pred             cCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCcchhhhhccCCCCCcCcccccCeeEecc
Q 031657           75 FGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISR  146 (155)
Q Consensus        75 ~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~i~~~~  146 (155)
                      ....   .+++|+.|.+.+|.....+|..+..+++|+.|.+++|..+....     ..+..+..+..+.+.+
T Consensus       223 ~~l~---~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-----~~~~~l~~L~~L~L~~  286 (328)
T 4fcg_A          223 PAIH---HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-----LDIHRLTQLEKLDLRG  286 (328)
T ss_dssp             GGGG---GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-----TTGGGCTTCCEEECTT
T ss_pred             hhhc---cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-----hhhhcCCCCCEEeCCC
Confidence            4433   79999999999998888999988889999999999987543221     1133444555555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.43  E-value=4e-06  Score=63.73  Aligned_cols=15  Identities=20%  Similarity=0.359  Sum_probs=9.0

Q ss_pred             CCCCCCCceeeeccc
Q 031657            4 LGKLPSLEILRIEEM   18 (155)
Q Consensus         4 l~~L~~L~~L~i~~~   18 (155)
                      ++.+++|++|.++++
T Consensus        59 l~~l~~L~~L~l~~n   73 (272)
T 3rfs_A           59 IQYLPNVRYLALGGN   73 (272)
T ss_dssp             GGGCTTCCEEECTTS
T ss_pred             cccCCCCcEEECCCC
Confidence            455666666666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.42  E-value=9.4e-07  Score=64.10  Aligned_cols=136  Identities=13%  Similarity=0.160  Sum_probs=67.7

Q ss_pred             CCCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccc
Q 031657            2 PPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDIT   81 (155)
Q Consensus         2 p~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~   81 (155)
                      |.++.+++|++|.++++ .+..++ .+.....+..+.+.++. ++.........+++|++|.+.++.--...+....   
T Consensus        60 ~~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~---  133 (197)
T 4ezg_A           60 TGIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN---  133 (197)
T ss_dssp             TTGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHT---
T ss_pred             HHHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCCccCcHhHHHHh---
Confidence            34556677777777766 343332 22222222233333321 1110011144567777777766431111121112   


Q ss_pred             cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCcchhhhhccCCCCCcCcccccCeeEecceeccC
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRYEQG  151 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~i~~~~~~~~~  151 (155)
                      .+++|+.|.+..|..+..+| .+.++++|+.|++++|.- ..      -.....+..+..+.+.+..+++
T Consensus       134 ~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~------~~~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HD------YRGIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             TCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CC------CTTGGGCSSCCEEEECBC----
T ss_pred             hCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cC------hHHhccCCCCCEEEeeCcccCC
Confidence            57788888888876577776 455678888888877641 11      1123344555666666665554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.39  E-value=7.2e-06  Score=62.26  Aligned_cols=111  Identities=17%  Similarity=0.198  Sum_probs=62.3

Q ss_pred             CCCCCCCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccc
Q 031657            3 PLGKLPSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDIT   81 (155)
Q Consensus         3 ~l~~L~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~   81 (155)
                      .++.+++|++|.++++ .+..++.... ....+..+.+.++. ++..+......+++|++|.+.++ ++..++...-  .
T Consensus        80 ~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~--~  154 (272)
T 3rfs_A           80 ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVF--D  154 (272)
T ss_dssp             GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT--T
T ss_pred             hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHh--c
Confidence            3677888888888876 4555554332 22233333444332 22222222456677777777765 4554443220  1


Q ss_pred             cCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+..| ++..++.. +.++++|+.|.++++.
T Consensus       155 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          155 KLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc
Confidence            4677777777776 46666554 3456777777776654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.36  E-value=1.5e-06  Score=64.71  Aligned_cols=22  Identities=14%  Similarity=0.351  Sum_probs=11.0

Q ss_pred             CCCCCCCceeeecccccceeeC
Q 031657            4 LGKLPSLEILRIEEMVSVKMVG   25 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~   25 (155)
                      ++.+++|++|.++++..+..++
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~   72 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLE   72 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEEC
T ss_pred             ccCCCCCcEEeCCCCCCcceeC
Confidence            4455555555555544344444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.33  E-value=1.3e-05  Score=60.71  Aligned_cols=23  Identities=13%  Similarity=0.335  Sum_probs=13.6

Q ss_pred             CCCCCCCceeeecccccceeeCcc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDE   27 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~   27 (155)
                      ++.+++|++|.++++ .+..++.+
T Consensus        57 ~~~l~~L~~L~l~~n-~l~~i~~~   79 (270)
T 2o6q_A           57 FHRLTKLRLLYLNDN-KLQTLPAG   79 (270)
T ss_dssp             SSSCTTCCEEECCSS-CCSCCCTT
T ss_pred             hcCCCCCCEEECCCC-ccCeeChh
Confidence            566677777777655 34444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.32  E-value=8.5e-06  Score=61.99  Aligned_cols=62  Identities=15%  Similarity=0.250  Sum_probs=32.1

Q ss_pred             CCCCCCCceeeecccccceeeCc-ccccCcccccccccCccccCCCCCCcccCCCCcceeeccC
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGD-EFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGI   66 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~   66 (155)
                      ++.+++|++|.++++ .+..+.. .+.+...+..+.+.++..+..........+++|++|.+.+
T Consensus        52 ~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~  114 (285)
T 1ozn_A           52 FRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR  114 (285)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCC
Confidence            677778888888766 3555532 2322333344444444333333222344556666666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.31  E-value=9.7e-06  Score=61.65  Aligned_cols=21  Identities=33%  Similarity=0.327  Sum_probs=10.3

Q ss_pred             ccCCCCcceeeccCcccCccc
Q 031657           53 VVAFPKLEKLDLGIMLQLEEW   73 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~   73 (155)
                      ...+++|++|++.+...+..+
T Consensus        76 ~~~l~~L~~L~l~~n~~l~~~   96 (285)
T 1ozn_A           76 FTGLALLEQLDLSDNAQLRSV   96 (285)
T ss_dssp             TTTCTTCCEEECCSCTTCCCC
T ss_pred             cCCccCCCEEeCCCCCCcccc
Confidence            334555555555554433333

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.31  E-value=2.2e-05  Score=58.79  Aligned_cols=110  Identities=18%  Similarity=0.197  Sum_probs=58.7

Q ss_pred             CCCCCCCceeeecccccceeeCccc-ccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEF-LGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      ++.+++|++|.++++ .+..++... .....+..+.+.++ .++..+......+++|++|.+++. ++..++...-  ..
T Consensus        55 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~--~~  129 (251)
T 3m19_A           55 FRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVF--DR  129 (251)
T ss_dssp             TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT--TT
T ss_pred             hcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCC-cCCCcChhHh--cc
Confidence            667777777777765 344444332 22222223333322 122222222445677777777654 4444443221  14


Q ss_pred             CCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecCc
Q 031657           83 MPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVP  119 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~  119 (155)
                      +++|+.|.+..+ +++.+|. .+..+++|+.|+++++.
T Consensus       130 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A          130 LTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc
Confidence            677777777765 5666665 35566777777776653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.28  E-value=1.1e-05  Score=65.26  Aligned_cols=108  Identities=19%  Similarity=0.310  Sum_probs=48.1

Q ss_pred             CCCCCCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      ++.+++|++|.++++ .+..++.+.. ....+..+.+.++. +...+......+++|+.|++.++..+..++...-  ..
T Consensus       108 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~--~~  183 (440)
T 3zyj_A          108 FNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF--EG  183 (440)
T ss_dssp             GTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT--TT
T ss_pred             ccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchh--hc
Confidence            566777777777765 4555554322 22222233333221 2222222244556666666665555544442211  13


Q ss_pred             CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEec
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIAD  117 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~  117 (155)
                      +++|+.|.+..+ +++.+|. +..+++|++|++++
T Consensus       184 l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~Ls~  216 (440)
T 3zyj_A          184 LSNLRYLNLAMC-NLREIPN-LTPLIKLDELDLSG  216 (440)
T ss_dssp             CSSCCEEECTTS-CCSSCCC-CTTCSSCCEEECTT
T ss_pred             ccccCeecCCCC-cCccccc-cCCCcccCEEECCC
Confidence            444555544444 3444432 22244444444433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.26  E-value=9.7e-06  Score=65.80  Aligned_cols=109  Identities=23%  Similarity=0.299  Sum_probs=57.0

Q ss_pred             CCCCCCCceeeecccccceeeCccccc-CcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLG-IGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      ++.+++|++|.++++ .+..++.+... ...+..+.+.++ .+...+......+++|++|++.++..++.++...-  ..
T Consensus       119 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~--~~  194 (452)
T 3zyi_A          119 FNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF--EG  194 (452)
T ss_dssp             TTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT--TT
T ss_pred             ccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhc--cC
Confidence            677888888888876 36666554322 222333333332 12222322345667777777777666666553211  14


Q ss_pred             CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c  118 (155)
                      +++|+.|.+..+ ++..+|. +..+++|++|+++++
T Consensus       195 l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~Ls~N  228 (452)
T 3zyi_A          195 LFNLKYLNLGMC-NIKDMPN-LTPLVGLEELEMSGN  228 (452)
T ss_dssp             CTTCCEEECTTS-CCSSCCC-CTTCTTCCEEECTTS
T ss_pred             CCCCCEEECCCC-ccccccc-ccccccccEEECcCC
Confidence            556666666554 3444443 233555555555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.22  E-value=4.2e-06  Score=62.20  Aligned_cols=140  Identities=9%  Similarity=0.050  Sum_probs=77.4

Q ss_pred             CCCCCCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcc---eeeccCcccCcccccCCCc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLE---KLDLGIMLQLEEWDFGKED   79 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~---~L~l~~~~~L~~~~~~~~~   79 (155)
                      ++.+++|++|.+.+|..+..++.... +...+..+.+.++. ++..+.  ...+++|+   +|++.+.+.++.++...- 
T Consensus        76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-  151 (239)
T 2xwt_C           76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAF-  151 (239)
T ss_dssp             EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTT-
T ss_pred             cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc--cccccccccccEEECCCCcchhhcCcccc-
Confidence            67889999999998777888875432 22233334443331 222221  33455555   777777656666654311 


Q ss_pred             cccCCccc-EEeecCCccCcCCCcCCCCCCCcCeEEEecCcchhhhhccCCCCCcCcc-cccCeeEecceeccCCC
Q 031657           80 ITIMPQVK-SLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKI-SHIPNILISRRYEQGGP  153 (155)
Q Consensus        80 ~~~~p~L~-~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i-~~i~~i~~~~~~~~~~~  153 (155)
                       ..+++|+ .|.+..+ +++.+|......++|++|.++++..+....    ...+..+ ..+..+.+.+..+.++|
T Consensus       152 -~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~----~~~~~~l~~~L~~L~l~~N~l~~l~  221 (239)
T 2xwt_C          152 -QGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVID----KDAFGGVYSGPSLLDVSQTSVTALP  221 (239)
T ss_dssp             -TTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEEC----TTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred             -cchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCC----HHHhhccccCCcEEECCCCccccCC
Confidence             1466777 7777665 466666654444667777777664333221    1112334 45555666555555555

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.19  E-value=9e-06  Score=63.31  Aligned_cols=106  Identities=16%  Similarity=0.140  Sum_probs=50.5

Q ss_pred             CCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            3 PLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         3 ~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      .++.+++|++|.++++ .+..++. +.....+..+.+.++ .++..+  ....+++|++|++.++. +..++. .   ..
T Consensus        61 ~~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~--~~~~l~~L~~L~l~~n~-i~~~~~-~---~~  130 (347)
T 4fmz_A           61 GIEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTN-KITDIS--ALQNLTNLRELYLNEDN-ISDISP-L---AN  130 (347)
T ss_dssp             TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG--GGTTCTTCSEEECTTSC-CCCCGG-G---TT
T ss_pred             hhhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCC-cccCch--HHcCCCcCCEEECcCCc-ccCchh-h---cc
Confidence            3455666666666655 3444432 222222223333333 111111  24455666666665532 222222 1   14


Q ss_pred             CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      +++|+.|.+..|+.+..++. +..+++|+.|.+++|.
T Consensus       131 l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~  166 (347)
T 4fmz_A          131 LTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK  166 (347)
T ss_dssp             CTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             CCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC
Confidence            66666666666665555444 3446666666666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.18  E-value=2.8e-06  Score=61.59  Aligned_cols=109  Identities=21%  Similarity=0.213  Sum_probs=71.6

Q ss_pred             CCCCCCCCceeeeccccccee-eCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccc
Q 031657            3 PLGKLPSLEILRIEEMVSVKM-VGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDIT   81 (155)
Q Consensus         3 ~l~~L~~L~~L~i~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~   81 (155)
                      .++.+++|++|.++++. +.. .+..+.....+..+.+.++.-....+ .....+++|++|.++++..+..++. .   .
T Consensus        83 ~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~-l---~  156 (197)
T 4ezg_A           83 PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIMP-L---K  156 (197)
T ss_dssp             GGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCCGG-G---G
T ss_pred             hhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCCccCcHhH-HHHhhCCCCCEEEccCCCCccccHh-h---c
Confidence            47789999999998864 333 22333222233333443331111011 1245789999999999876777763 2   2


Q ss_pred             cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+..| .+..++ .+.++++|+.|++++.+
T Consensus       157 ~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          157 TLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             GCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             CCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence            7999999999998 577777 56679999999998754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.18  E-value=1.2e-06  Score=74.51  Aligned_cols=113  Identities=11%  Similarity=0.112  Sum_probs=76.8

Q ss_pred             CCCCCCCceeeeccccccee------------------eCcccc--cCcccccccccCccccCCCCCCcccCCCCcceee
Q 031657            4 LGKLPSLEILRIEEMVSVKM------------------VGDEFL--GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLD   63 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~------------------l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~   63 (155)
                      +++|++|++|.++++. +..                  +|.++.  ....+..+.+.++.-....+ .....+++|++|+
T Consensus       202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~  279 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLIN  279 (636)
T ss_dssp             GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEE
T ss_pred             HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEE
Confidence            7889999999999875 666                  666554  44445555666664333333 2366788999999


Q ss_pred             ccCcccCcc--cccCCCc---cccCCcccEEeecCCccCcCCCc--CCCCCCCcCeEEEecCc
Q 031657           64 LGIMLQLEE--WDFGKED---ITIMPQVKSLSIFFCEKLKSLPD--QLLRSTTLESLEIADVP  119 (155)
Q Consensus        64 l~~~~~L~~--~~~~~~~---~~~~p~L~~L~i~~C~~L~~lp~--~~~~l~~L~~L~i~~c~  119 (155)
                      +.++..+..  ++...+.   ...+++|+.|.+..+ ++..+|.  .+.++++|+.|.++++.
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~  341 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQ  341 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCC
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCc
Confidence            988765553  5543320   012388888888887 5668887  77778888888887764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.16  E-value=1.7e-05  Score=58.86  Aligned_cols=109  Identities=17%  Similarity=0.143  Sum_probs=60.6

Q ss_pred             CCCCCCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      ++.+++|++|.++++. +..++.+.. +...+..+.+.++ .++..+......+++|+.|.+.+. ++..++....   .
T Consensus        60 ~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~---~  133 (229)
T 3e6j_A           60 FDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIE---R  133 (229)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGG---G
T ss_pred             hhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCC-cccccCcccc---c
Confidence            5666777777776653 555543322 2222223333332 233333333446677777777653 3555554433   6


Q ss_pred             CCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP  119 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~  119 (155)
                      +++|+.|.+.++ +++.+|.. +..+++|+.|.+.+.+
T Consensus       134 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          134 LTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence            777888877775 57776643 5567778887776543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.16  E-value=1.6e-06  Score=75.08  Aligned_cols=134  Identities=10%  Similarity=-0.002  Sum_probs=58.1

Q ss_pred             CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM   83 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~   83 (155)
                      ++.+++|++|.++++.--..+|.++.....+..++++++.=....+ .+.+.+++|++|++++..--..++....   .+
T Consensus       628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~l~~L~~L~~LdLs~N~l~g~ip~~l~---~l  703 (768)
T 3rgz_A          628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKLDGRIPQAMS---AL  703 (768)
T ss_dssp             CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEECCCGGGG---GC
T ss_pred             hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC-hHHhCCCCCCEEECCCCcccCcCChHHh---CC
Confidence            6778889999998875333455443322222223333221111111 1244566666666655432223443333   56


Q ss_pred             CcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCcchh----hhhccCCCCCcCcccccCee
Q 031657           84 PQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVE----ENFKKDTGKDWSKISHIPNI  142 (155)
Q Consensus        84 p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~~l~----~~~~~~~~~~w~~i~~i~~i  142 (155)
                      ++|+.|.+.+++---.+|...+ +..+....+.+++.+.    ..|....+++|++|+|++.+
T Consensus       704 ~~L~~L~ls~N~l~g~iP~~~~-~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~  765 (768)
T 3rgz_A          704 TMLTEIDLSNNNLSGPIPEMGQ-FETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHH  765 (768)
T ss_dssp             CCCSEEECCSSEEEEECCSSSS-GGGSCGGGGCSCTEEESTTSCCCCSCC-------------
T ss_pred             CCCCEEECcCCcccccCCCchh-hccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence            6666666666532223454432 4444444444443222    25677788899999999975

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.14  E-value=2e-06  Score=60.60  Aligned_cols=105  Identities=19%  Similarity=0.186  Sum_probs=71.3

Q ss_pred             CCCCCceeeecccccce--eeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcc-cccCCCcccc
Q 031657            6 KLPSLEILRIEEMVSVK--MVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEE-WDFGKEDITI   82 (155)
Q Consensus         6 ~L~~L~~L~i~~~~~l~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~-~~~~~~~~~~   82 (155)
                      ..++|++|.++++. +.  .++..+.....+..+.+.++. ++..  .....+++|++|.++++. +.. ++....   .
T Consensus        22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~---~   93 (168)
T 2ell_A           22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSENR-IFGGLDMLAE---K   93 (168)
T ss_dssp             CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESCC-CCSCCCHHHH---H
T ss_pred             CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCCc-CchHHHHHHh---h
Confidence            45788999998874 54  565443333344445555543 3332  336678999999998764 333 332221   5


Q ss_pred             CCcccEEeecCCccCcCCC--cCCCCCCCcCeEEEecCc
Q 031657           83 MPQVKSLSIFFCEKLKSLP--DQLLRSTTLESLEIADVP  119 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp--~~~~~l~~L~~L~i~~c~  119 (155)
                      +++|+.|.+..+ +++.+|  ..+.++++|+.|.+++++
T Consensus        94 l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A           94 LPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             CTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred             CCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc
Confidence            899999999998 688876  567779999999999875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.12  E-value=9e-06  Score=70.37  Aligned_cols=108  Identities=15%  Similarity=0.120  Sum_probs=81.7

Q ss_pred             CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM   83 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~   83 (155)
                      +..+++|+.|.++++. +..++..+.....+..+.+.++ .++..+ .++..+++|+.|+|++.. +..++...+   .+
T Consensus       220 ~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp-~~~~~l~~L~~L~Ls~N~-l~~lp~~~~---~l  292 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTELP-AEIKNLSNLRVLDLSHNR-LTSLPAELG---SC  292 (727)
T ss_dssp             --CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCCC-GGGGGGTTCCEEECTTSC-CSSCCSSGG---GG
T ss_pred             hccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCcccC-hhhhCCCCCCEEeCcCCc-CCccChhhc---CC
Confidence            6788999999999875 6677766655444555555554 333444 236789999999998864 667766555   79


Q ss_pred             CcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           84 PQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        84 p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ++|+.|.+.++ ++..+|..+.++++|+.|.++++.
T Consensus       293 ~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          293 FQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             TTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred             CCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence            99999999997 789999999999999999999876

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.12  E-value=1.2e-05  Score=66.33  Aligned_cols=64  Identities=14%  Similarity=0.269  Sum_probs=28.7

Q ss_pred             cCCcccEEeecCCccCcCC-CcCCCCCCCcCeEEEecCcchhhhhccCCCCCcCcccccCeeEecceeccC
Q 031657           82 IMPQVKSLSIFFCEKLKSL-PDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRYEQG  151 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~l-p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~i~~~~~~~~~  151 (155)
                      .+++|+.|.+..|. ++.+ |..+.++++|++|.+++|. +...    ....+..+..+..+.+.+..+.+
T Consensus       468 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~----~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          468 ELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQ-LKSV----PDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSCC----CTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCc-CCCC----CHHHhhcccCCcEEEecCCcccC
Confidence            34555555555542 3332 4444455555555555542 1111    01123344455556665554443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.11  E-value=1.3e-05  Score=66.62  Aligned_cols=62  Identities=19%  Similarity=0.190  Sum_probs=32.5

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecC
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADV  118 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c  118 (155)
                      +..+++|++|++++. +++.++.+.-  ..+++|+.|.+.++ +++.+|.. +.++++|++|.++++
T Consensus        96 f~~L~~L~~L~Ls~N-~l~~l~~~~f--~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N  158 (635)
T 4g8a_A           96 YQSLSHLSTLILTGN-PIQSLALGAF--SGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN  158 (635)
T ss_dssp             TTTCTTCCEEECTTC-CCCEECGGGG--TTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSS
T ss_pred             hcCCCCCCEEEccCC-cCCCCCHHHh--cCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccC
Confidence            335566666666554 2444443210  14566666666665 45555542 445666666666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.10  E-value=6.2e-05  Score=55.80  Aligned_cols=107  Identities=19%  Similarity=0.159  Sum_probs=71.7

Q ss_pred             CCCCceeeecccccceeeCcc-cccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCc
Q 031657            7 LPSLEILRIEEMVSVKMVGDE-FLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQ   85 (155)
Q Consensus         7 L~~L~~L~i~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~   85 (155)
                      .++|++|.++++. +..+... +.+...+..+.+.++. +...+......+++|+.|++++. ++..++...-  ..+++
T Consensus        39 ~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~--~~l~~  113 (229)
T 3e6j_A           39 PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVF--DRLVH  113 (229)
T ss_dssp             CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT--TTCTT
T ss_pred             CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChhHh--Ccchh
Confidence            4789999999874 5555333 3233333344444432 33333333567889999999875 5666654321  16889


Q ss_pred             ccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           86 VKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        86 L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      |+.|.+..+ +++.+|..+.++++|+.|.+++..
T Consensus       114 L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~  146 (229)
T 3e6j_A          114 LKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ  146 (229)
T ss_dssp             CCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC
T ss_pred             hCeEeccCC-cccccCcccccCCCCCEEECCCCc
Confidence            999999886 688999888889999999998753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.10  E-value=3.8e-05  Score=62.03  Aligned_cols=111  Identities=16%  Similarity=0.193  Sum_probs=71.8

Q ss_pred             CCCCCCCceeeecccccceeeCccc-ccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEF-LGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      ++++++|++|.++++ .+..++... .+...+..+.+.++ .++..+......+++|++|++.+.. ++.++...  ...
T Consensus        84 ~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~--~~~  158 (440)
T 3zyj_A           84 FKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYA--FNR  158 (440)
T ss_dssp             TSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTT--TTT
T ss_pred             hhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCc-ccccCHHH--hhh
Confidence            677888888888876 355665332 22333344444443 3344443345677888888887643 45544321  126


Q ss_pred             CCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecCc
Q 031657           83 MPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVP  119 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~  119 (155)
                      +++|+.|.+.+|..+..++. .+..+++|+.|.++++.
T Consensus       159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  196 (440)
T 3zyj_A          159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN  196 (440)
T ss_dssp             CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred             CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence            88999999998888888776 45678899999988764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.08  E-value=3.9e-05  Score=62.22  Aligned_cols=111  Identities=17%  Similarity=0.169  Sum_probs=68.1

Q ss_pred             CCCCCCCceeeecccccceeeCcc-cccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDE-FLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      ++++++|++|.++++ .+..++.. +.+...+..+.+.++ .++..+......+++|++|++++.. ++.++...  ...
T Consensus        95 ~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~--~~~  169 (452)
T 3zyi_A           95 FRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYA--FNR  169 (452)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTT--TTT
T ss_pred             cCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCC-cceeCHhH--Hhc
Confidence            667778888887766 45555432 222233333344333 2333333335567788888887643 45544321  126


Q ss_pred             CCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP  119 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~  119 (155)
                      +++|+.|.+.+|..+..++.. +..+++|+.|.++++.
T Consensus       170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN  207 (452)
T ss_dssp             CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence            888888888888888887763 5568888888888764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.08  E-value=2.3e-05  Score=63.13  Aligned_cols=109  Identities=25%  Similarity=0.300  Sum_probs=60.5

Q ss_pred             CCCCCCCceeeecccccceeeCc-ccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCccc-ccCCCccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGD-EFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEW-DFGKEDIT   81 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~-~~~~~~~~   81 (155)
                      ++.+++|++|.++++. +..++. .+.+...+..+++.++ .++.........+++|++|+++++. +..+ +....   
T Consensus       295 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~---  368 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFL---  368 (455)
T ss_dssp             TTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTT---
T ss_pred             cccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCc-ccccChhhcc---
Confidence            5666777777776653 444432 2222223333344333 1122211224467777777777653 3433 22222   


Q ss_pred             cCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+.++ +++.+|.. +..+++|+.|++++++
T Consensus       369 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          369 GLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence            5788888888876 57777764 3567888888887644

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.06  E-value=4.1e-05  Score=57.30  Aligned_cols=110  Identities=19%  Similarity=0.235  Sum_probs=76.3

Q ss_pred             CCCCCCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      ++.+++|++|.++++ .+..++.... ....+..+.+.++ .++..+......+++|+.|.+++. ++..++...  ...
T Consensus        79 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~  153 (251)
T 3m19_A           79 FDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGA--FDK  153 (251)
T ss_dssp             TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT--TTT
T ss_pred             hccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHH--cCc
Confidence            788999999999987 4666654432 2233334444443 344444333567899999999876 566666421  126


Q ss_pred             CCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecCc
Q 031657           83 MPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVP  119 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~  119 (155)
                      +++|+.|.+..+ ++..++. .+..+++|+.|.+++.+
T Consensus       154 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          154 LTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence            899999999997 6888776 56679999999998755

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.05  E-value=1.7e-05  Score=61.37  Aligned_cols=15  Identities=20%  Similarity=0.189  Sum_probs=8.5

Q ss_pred             CCCCCCCceeeeccc
Q 031657            4 LGKLPSLEILRIEEM   18 (155)
Q Consensus         4 l~~L~~L~~L~i~~~   18 (155)
                      ++.+++|++|.++++
T Consensus        59 ~~~l~~L~~L~L~~n   73 (308)
T 1h6u_A           59 VQYLNNLIGLELKDN   73 (308)
T ss_dssp             GGGCTTCCEEECCSS
T ss_pred             hhccCCCCEEEccCC
Confidence            445556666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.05  E-value=2.5e-05  Score=59.86  Aligned_cols=15  Identities=27%  Similarity=0.361  Sum_probs=11.1

Q ss_pred             CCCCCCCceeeeccc
Q 031657            4 LGKLPSLEILRIEEM   18 (155)
Q Consensus         4 l~~L~~L~~L~i~~~   18 (155)
                      ++++++|++|.++++
T Consensus        48 ~~~l~~L~~L~L~~n   62 (306)
T 2z66_A           48 FDKLTQLTKLSLSSN   62 (306)
T ss_dssp             TTTCTTCSEEECCSS
T ss_pred             hhccccCCEEECCCC
Confidence            567777888877765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.04  E-value=1.4e-05  Score=56.12  Aligned_cols=108  Identities=18%  Similarity=0.179  Sum_probs=62.1

Q ss_pred             CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccc--cCCCccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWD--FGKEDIT   81 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~--~~~~~~~   81 (155)
                      ++.+++|++|.+.++. +..+ ..+.....+..+++.++.-....+ .....+++|+.|.+.++ ++..++  ....   
T Consensus        45 ~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~---  117 (168)
T 2ell_A           45 TAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLD-MLAEKLPNLTHLNLSGN-KLKDISTLEPLK---  117 (168)
T ss_dssp             CGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCC-HHHHHCTTCCEEECBSS-SCCSSGGGGGGS---
T ss_pred             HHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHH-HHHhhCCCCCEEeccCC-ccCcchhHHHHh---
Confidence            4677888888887764 5554 223222223333443332111111 11234778888888775 455543  1222   


Q ss_pred             cCCcccEEeecCCccCcCCCc----CCCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKSLPD----QLLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~----~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+..+ .+..+|.    .+..+++|+.|++++|.
T Consensus       118 ~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          118 KLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             SCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             cCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            5778888888776 4666665    55567888888877765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.04  E-value=1.3e-05  Score=62.78  Aligned_cols=36  Identities=19%  Similarity=0.265  Sum_probs=15.8

Q ss_pred             CCcccEEeecCCccCcCCC-cCCCCCCCcCeEEEecC
Q 031657           83 MPQVKSLSIFFCEKLKSLP-DQLLRSTTLESLEIADV  118 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp-~~~~~l~~L~~L~i~~c  118 (155)
                      +++|+.|.+.++..+..++ ..+..+++|++|.++++
T Consensus       148 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             CCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            4455555554443343332 23333444444444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.02  E-value=0.00022  Score=51.60  Aligned_cols=34  Identities=32%  Similarity=0.479  Sum_probs=15.1

Q ss_pred             CCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEec
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIAD  117 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~  117 (155)
                      +++|+.|.+..+ ++..++.. +.++++|+.|.+++
T Consensus        99 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~  133 (208)
T 2o6s_A           99 LTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ  133 (208)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCC
Confidence            444555554443 34444332 23344455554444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.01  E-value=6.4e-05  Score=54.50  Aligned_cols=110  Identities=22%  Similarity=0.283  Sum_probs=68.7

Q ss_pred             CCCCCCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      ++.+++|++|.+.++ .+..++.... ....+..+.+.++ .++..+......+++|++|++.+. ++..++...  ...
T Consensus        48 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~--~~~  122 (208)
T 2o6s_A           48 FDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGV--FDK  122 (208)
T ss_dssp             TTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT--TTT
T ss_pred             hcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhH--hcc
Confidence            567777777777765 4555544332 2222333344333 233333333456788888888764 455554332  126


Q ss_pred             CCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP  119 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~  119 (155)
                      +++|+.|.+.++ ++..++.. +.++++|+.|++++++
T Consensus       123 l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          123 LTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence            899999999987 68888775 5679999999998853

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.00  E-value=2.3e-05  Score=65.42  Aligned_cols=36  Identities=14%  Similarity=0.123  Sum_probs=17.6

Q ss_pred             cCCcccEEeecCCccCcC-CCcCCCCCCCcCeEEEecC
Q 031657           82 IMPQVKSLSIFFCEKLKS-LPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~-lp~~~~~l~~L~~L~i~~c  118 (155)
                      .+++|+.|.+.+| ++.. .|..+.++++|++|.++++
T Consensus       471 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          471 NTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN  507 (606)
T ss_dssp             TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC
Confidence            3455555555555 2332 2334444555555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.00  E-value=3.6e-05  Score=65.40  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=19.3

Q ss_pred             cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c  118 (155)
                      .+++|+.|.+..| .+..++. +..+++|+.|.+++|
T Consensus       151 ~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          151 RLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             SCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred             ccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCC
Confidence            4555666666555 3444444 444666666666655

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.00  E-value=1.1e-05  Score=69.96  Aligned_cols=64  Identities=13%  Similarity=-0.003  Sum_probs=42.7

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ...+++|++|++.++.--..++...+   .+++|+.|.+.+|.-...+|..+.++++|+.|++++++
T Consensus       486 l~~l~~L~~L~L~~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          486 LSNCTNLNWISLSNNRLTGEIPKWIG---RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGG---GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             HhcCCCCCEEEccCCccCCcCChHHh---cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            44566666666666553334444333   67788888888875444677777778888888887765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.98  E-value=6.5e-05  Score=62.67  Aligned_cols=26  Identities=12%  Similarity=0.250  Sum_probs=17.0

Q ss_pred             CCCCCCCceeeecccccceeeCccccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLG   30 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~   30 (155)
                      ++.+++|++|.++++ .+..++..+..
T Consensus       274 ~~~l~~L~~L~l~~n-~l~~lp~~l~~  299 (606)
T 3t6q_A          274 FHCFSGLQELDLTAT-HLSELPSGLVG  299 (606)
T ss_dssp             TTTCTTCSEEECTTS-CCSCCCSSCCS
T ss_pred             hccccCCCEEeccCC-ccCCCChhhcc
Confidence            667777888877766 45566655433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.98  E-value=4.9e-05  Score=58.42  Aligned_cols=35  Identities=14%  Similarity=0.130  Sum_probs=22.6

Q ss_pred             cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEec
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIAD  117 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~  117 (155)
                      .+++|+.|.+.++ +++.+|.++...+.|+.|.+++
T Consensus       170 ~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~  204 (290)
T 1p9a_G          170 GLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHG  204 (290)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCS
T ss_pred             CcCCCCEEECCCC-cCCccChhhcccccCCeEEeCC
Confidence            3566666666665 4666666666666777777764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.97  E-value=5.4e-06  Score=73.35  Aligned_cols=113  Identities=12%  Similarity=0.189  Sum_probs=63.7

Q ss_pred             CCCCCCCceeeeccccccee------------------eCcccc--cCcccccccccCccccCCCCCCcccCCCCcceee
Q 031657            4 LGKLPSLEILRIEEMVSVKM------------------VGDEFL--GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLD   63 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~------------------l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~   63 (155)
                      +++|++|++|.++++. +..                  +|.++.  ....+..+.+.++.-....+ ..+..+++|+.|.
T Consensus       444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~  521 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLN  521 (876)
T ss_dssp             GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEE
T ss_pred             HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEE
Confidence            6788888888888764 554                  555543  33344445555554333333 2356777888888


Q ss_pred             ccCcccCcc--cccCCC----ccccCCcccEEeecCCccCcCCCc--CCCCCCCcCeEEEecCc
Q 031657           64 LGIMLQLEE--WDFGKE----DITIMPQVKSLSIFFCEKLKSLPD--QLLRSTTLESLEIADVP  119 (155)
Q Consensus        64 l~~~~~L~~--~~~~~~----~~~~~p~L~~L~i~~C~~L~~lp~--~~~~l~~L~~L~i~~c~  119 (155)
                      ++++..+..  ++...+    ....+++|+.|.+..+ ++..+|.  .+.++++|+.|.++++.
T Consensus       522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred             CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCC
Confidence            777653432  332111    0113456666666665 3556666  55556666666665543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.97  E-value=7.9e-05  Score=57.26  Aligned_cols=110  Identities=19%  Similarity=0.152  Sum_probs=76.0

Q ss_pred             CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM   83 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~   83 (155)
                      .+.+++|++|.++++ .+..++..+.+...+..+.+.++ .++..+......+++|++|.+++. .+..++.+.-  ..+
T Consensus        73 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~--~~l  147 (290)
T 1p9a_G           73 DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL--TPT  147 (290)
T ss_dssp             CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTT--TTC
T ss_pred             CCCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChhhc--ccc
Confidence            468899999999876 46666654433333334444333 233333334667899999999875 5666654321  158


Q ss_pred             CcccEEeecCCccCcCCCcCC-CCCCCcCeEEEecCc
Q 031657           84 PQVKSLSIFFCEKLKSLPDQL-LRSTTLESLEIADVP  119 (155)
Q Consensus        84 p~L~~L~i~~C~~L~~lp~~~-~~l~~L~~L~i~~c~  119 (155)
                      ++|+.|.+..+ +++.+|.+. .++++|+.|.++++.
T Consensus       148 ~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          148 PKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             TTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCc
Confidence            89999999987 689998864 569999999998764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.97  E-value=6.8e-05  Score=60.91  Aligned_cols=108  Identities=19%  Similarity=0.161  Sum_probs=50.4

Q ss_pred             CCCCCCCceeeecccccceeeCc-ccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCccc-ccCCCccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGD-EFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEW-DFGKEDIT   81 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~-~~~~~~~~   81 (155)
                      ++.+++|++|.++++ .+..+.. .+.+...+..+.+.++ .++..+......+++|++|++.+.. +..+ +....   
T Consensus        52 ~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~---  125 (477)
T 2id5_A           52 FASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQ---  125 (477)
T ss_dssp             TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTT---
T ss_pred             ccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCc-cccCChhHcc---
Confidence            667777777777766 4555532 2222222333333332 1223332224456677777665532 2221 11111   


Q ss_pred             cCCcccEEeecCCccCcCC-CcCCCCCCCcCeEEEecC
Q 031657           82 IMPQVKSLSIFFCEKLKSL-PDQLLRSTTLESLEIADV  118 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~l-p~~~~~l~~L~~L~i~~c  118 (155)
                      .+++|+.|.+..+ ++..+ +..+..+++|++|.++++
T Consensus       126 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n  162 (477)
T 2id5_A          126 DLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKC  162 (477)
T ss_dssp             TCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESC
T ss_pred             ccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCC
Confidence            3555555555554 23322 233444555555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.96  E-value=0.0001  Score=55.70  Aligned_cols=23  Identities=17%  Similarity=0.257  Sum_probs=15.2

Q ss_pred             CCCCCCCceeeecccccceeeCcc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDE   27 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~   27 (155)
                      ++.+++|++|.++++ .+..++..
T Consensus        81 ~~~l~~L~~L~l~~n-~l~~~~~~  103 (270)
T 2o6q_A           81 FKELKNLETLWVTDN-KLQALPIG  103 (270)
T ss_dssp             TSSCTTCCEEECCSS-CCCCCCTT
T ss_pred             hcCCCCCCEEECCCC-cCCcCCHh
Confidence            567888888888766 35555443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.95  E-value=0.00011  Score=54.19  Aligned_cols=110  Identities=14%  Similarity=0.218  Sum_probs=54.8

Q ss_pred             CCCCCCCceeeecccccceeeC-cccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVG-DEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      ++.+++|++|.++++ .+..+. ..+.+...+..+.+.+. .++..+......+++|+.|.+++. .+..+....  ...
T Consensus        52 ~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~--~~~  126 (220)
T 2v9t_B           52 FSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNAN-KINCLRVDA--FQD  126 (220)
T ss_dssp             STTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT--TTT
T ss_pred             hhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCCC-CCCEeCHHH--cCC
Confidence            555666666666655 244442 22222222222222222 222233222345666666666553 233332211  115


Q ss_pred             CCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP  119 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~  119 (155)
                      +++|+.|.+.++ +++.++.. +..+++|+.|.+++.+
T Consensus       127 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          127 LHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence            677777777775 46666653 5567778888776543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.94  E-value=8.8e-07  Score=68.72  Aligned_cols=38  Identities=16%  Similarity=0.168  Sum_probs=20.3

Q ss_pred             cCCcccEEeecCCccCc-CCCcCCCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLK-SLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~-~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+.+|..+. ..+..+.++++|++|.+++|.
T Consensus       220 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            45566666666654333 233344445666666666654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.91  E-value=3.2e-05  Score=64.58  Aligned_cols=34  Identities=12%  Similarity=0.240  Sum_probs=16.8

Q ss_pred             CCcccEEeecCCccCcCCCcCCCCCC-CcCeEEEec
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQLLRST-TLESLEIAD  117 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~~~~l~-~L~~L~i~~  117 (155)
                      +++|+.|.+.++ +++.+|..+..++ +|+.|.+++
T Consensus       520 l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~  554 (606)
T 3vq2_A          520 LYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTN  554 (606)
T ss_dssp             CTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCS
T ss_pred             CCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccC
Confidence            445555555554 2445555444443 355555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.91  E-value=3.7e-05  Score=59.57  Aligned_cols=63  Identities=19%  Similarity=0.287  Sum_probs=44.4

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ...+++|+.|++.+.. +..++...  ...+++|+.|.+.++ ++..+|.++..+++|++|.++++.
T Consensus       212 ~~~l~~L~~L~Ls~n~-l~~~~~~~--~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          212 LKGLNNLAKLGLSFNS-ISAVDNGS--LANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             GTTCTTCCEEECCSSC-CCEECTTT--GGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             hcCCCCCCEEECCCCc-CceeChhh--ccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence            4456677777776542 33333211  226889999999887 688899888889999999998775

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.91  E-value=8.2e-05  Score=60.84  Aligned_cols=56  Identities=20%  Similarity=0.179  Sum_probs=25.7

Q ss_pred             cCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657           54 VAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        54 ~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c  118 (155)
                      ..+++|++|++++. +++.++  .+   .+++|+.|.+..+ +++.++  +.++++|++|+++++
T Consensus       103 ~~l~~L~~L~L~~N-~l~~l~--~~---~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          103 TPLTKLTYLNCDTN-KLTKLD--VS---QNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLN  158 (457)
T ss_dssp             TTCTTCCEEECCSS-CCSCCC--CT---TCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTC
T ss_pred             CCCCcCCEEECCCC-cCCeec--CC---CCCcCCEEECCCC-ccceec--cccCCcCCEEECCCC
Confidence            34555555555443 233322  11   4555555555554 344443  334555555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.91  E-value=4.6e-05  Score=60.39  Aligned_cols=110  Identities=16%  Similarity=0.189  Sum_probs=56.0

Q ss_pred             CCCCCCCceeeecccccceeeCc-ccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGD-EFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      ++.+++|++|.+.++. +..++. .+.....+..+.+.++. ++..+......+++|++|++.++ .+..++...-  ..
T Consensus        65 ~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~  139 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIF--HN  139 (390)
T ss_dssp             HHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT--TT
T ss_pred             hcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHh--cC
Confidence            3456666666666552 444443 22222222333333321 22222222456677777777664 3444443320  14


Q ss_pred             CCcccEEeecCCccCcCCC-cCCCCCCCcCeEEEecCc
Q 031657           83 MPQVKSLSIFFCEKLKSLP-DQLLRSTTLESLEIADVP  119 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp-~~~~~l~~L~~L~i~~c~  119 (155)
                      +++|+.|.+.++ ++..++ ..+..+++|++|.++++.
T Consensus       140 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          140 TPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             CTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCc
Confidence            677777777766 355443 345566777777776654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.91  E-value=7.6e-05  Score=55.01  Aligned_cols=109  Identities=15%  Similarity=0.186  Sum_probs=64.4

Q ss_pred             CCCCCCCceeeecccccceeeCcc-cccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccc-cCCCccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDE-FLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWD-FGKEDIT   81 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~-~~~~~~~   81 (155)
                      ++.+++|++|.++++ .+..++.. +.+...+..+.+.++ .++..+......+++|++|.+++.. +..+. ....   
T Consensus        53 ~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~---  126 (220)
T 2v70_A           53 FKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFI---  126 (220)
T ss_dssp             GGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSST---
T ss_pred             hccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcC---
Confidence            567777788877765 35555542 222222223333322 1222222234567788888877643 44442 2222   


Q ss_pred             cCCcccEEeecCCccCcCC-CcCCCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKSL-PDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~l-p~~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+.++ +++.+ |..+..+++|+.|.+++.+
T Consensus       127 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          127 GLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence            5788999998886 57766 5667778899999887654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.91  E-value=6e-05  Score=58.32  Aligned_cols=20  Identities=25%  Similarity=0.280  Sum_probs=12.5

Q ss_pred             CCCCCCCceeeecccccceee
Q 031657            4 LGKLPSLEILRIEEMVSVKMV   24 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l   24 (155)
                      ++.+++|++|.++++. +..+
T Consensus        81 ~~~l~~L~~L~L~~n~-l~~~  100 (308)
T 1h6u_A           81 LKNLTKITELELSGNP-LKNV  100 (308)
T ss_dssp             GTTCCSCCEEECCSCC-CSCC
T ss_pred             HccCCCCCEEEccCCc-CCCc
Confidence            5667777777777653 4443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.90  E-value=3.9e-05  Score=58.97  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=19.2

Q ss_pred             cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c  118 (155)
                      .+++|+.|.+..| ++..++. +..+++|+.|.++++
T Consensus       154 ~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          154 RLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             GCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred             cCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC
Confidence            4555555555554 3554444 444666666666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.90  E-value=7e-05  Score=58.41  Aligned_cols=90  Identities=19%  Similarity=0.193  Sum_probs=65.2

Q ss_pred             CCCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccc
Q 031657            2 PPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDIT   81 (155)
Q Consensus         2 p~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~   81 (155)
                      |.++.+.+|++|.+++...+..++.+.                        +..+++|+.|+|++. +|..++...  ..
T Consensus        25 p~l~~~~~L~~L~l~~~n~l~~~~~~~------------------------~~~l~~L~~L~l~~N-~l~~~~~~~--~~   77 (347)
T 2ifg_A           25 HHLPGAENLTELYIENQQHLQHLELRD------------------------LRGLGELRNLTIVKS-GLRFVAPDA--FH   77 (347)
T ss_dssp             TTSCSCSCCSEEECCSCSSCCEECGGG------------------------SCSCCCCSEEECCSS-CCCEECTTG--GG
T ss_pred             CCCCCCCCeeEEEccCCCCCCCcChhH------------------------hccccCCCEEECCCC-ccceeCHHH--hc
Confidence            446777788888887645666665432                        447899999999886 677766432  12


Q ss_pred             cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+.+. +|..+|........|+.|.+.+.+
T Consensus        78 ~l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           78 FTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             SCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             CCcCCCEEeCCCC-ccceeCHHHcccCCceEEEeeCCC
Confidence            6999999999885 799998865544459999987543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.89  E-value=4.2e-05  Score=62.16  Aligned_cols=37  Identities=24%  Similarity=0.263  Sum_probs=19.8

Q ss_pred             cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c  118 (155)
                      .+++|+.|.+..|+.+..+|.......+|+.|.++++
T Consensus       198 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  234 (477)
T 2id5_A          198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC  234 (477)
T ss_dssp             SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred             cCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence            3555666666665555555544444445555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.88  E-value=6e-06  Score=56.92  Aligned_cols=105  Identities=16%  Similarity=0.151  Sum_probs=68.3

Q ss_pred             CCCCCceeeecccccce--eeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcc-cccCCCcccc
Q 031657            6 KLPSLEILRIEEMVSVK--MVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEE-WDFGKEDITI   82 (155)
Q Consensus         6 ~L~~L~~L~i~~~~~l~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~-~~~~~~~~~~   82 (155)
                      ..++|++|.++++. +.  .++..+.....+..+.+.++ .++..  .....+++|++|.++++. +.. ++....   .
T Consensus        15 ~~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~---~   86 (149)
T 2je0_A           15 TPSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNR-VSGGLEVLAE---K   86 (149)
T ss_dssp             CGGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSC-CCSCTHHHHH---H
T ss_pred             CCccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCc-ccchHHHHhh---h
Confidence            45678888888774 44  55443333333334444443 22222  235678999999998764 333 333222   5


Q ss_pred             CCcccEEeecCCccCcCCC--cCCCCCCCcCeEEEecCc
Q 031657           83 MPQVKSLSIFFCEKLKSLP--DQLLRSTTLESLEIADVP  119 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp--~~~~~l~~L~~L~i~~c~  119 (155)
                      +++|+.|.+.++ +++.++  ..+.++++|+.|.+++++
T Consensus        87 l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           87 CPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             CTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             CCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc
Confidence            899999999998 477765  667779999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.88  E-value=4.4e-05  Score=64.21  Aligned_cols=109  Identities=17%  Similarity=0.205  Sum_probs=63.1

Q ss_pred             CCCCCCCceeeecccccceeeCc-ccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCC-Cccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGD-EFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGK-EDIT   81 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~-~~~~   81 (155)
                      ++.+++|++|.++++. +..++. .+.....+..+.+.++. ++..+...+..+++|++|+++++ .+..++... +   
T Consensus        71 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~---  144 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFH---  144 (597)
T ss_dssp             HHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT---
T ss_pred             HccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhc---
Confidence            4556777777777663 555543 22222333344444332 33333333456778888887765 455555432 2   


Q ss_pred             cCCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+.++ .+..++. .+.++++|+.|.++++.
T Consensus       145 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          145 NTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             TCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred             cCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCC
Confidence            5778888888776 4555443 46667778877777654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.87  E-value=0.00017  Score=55.19  Aligned_cols=35  Identities=14%  Similarity=0.139  Sum_probs=14.0

Q ss_pred             CCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecC
Q 031657           83 MPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADV  118 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c  118 (155)
                      +++|+.|.+.++ ++..++. .+..+++|+.|+++++
T Consensus       198 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          198 LSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             CTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS
T ss_pred             CCCCCEEECCCC-ccCccChhhccCcccCCEeECCCC
Confidence            444444444443 2333322 2233444444444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.87  E-value=1.5e-05  Score=62.05  Aligned_cols=106  Identities=16%  Similarity=0.137  Sum_probs=69.4

Q ss_pred             CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM   83 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~   83 (155)
                      ++.+++|++|.++++. +..++. +.....+..+.+.++ .++..  .....+++|++|.++++ .+..++..    ..+
T Consensus       217 ~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~----~~l  286 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTN-QISDI--NAVKDLTKLKMLNVGSN-QISDISVL----NNL  286 (347)
T ss_dssp             GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCC--GGGTTCTTCCEEECCSS-CCCCCGGG----GGC
T ss_pred             hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCC-ccCCC--hhHhcCCCcCEEEccCC-ccCCChhh----cCC
Confidence            5678899999998873 444433 222233334444444 22222  22567899999999886 55555432    268


Q ss_pred             CcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           84 PQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        84 p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ++|+.|.+.+|+--...+..+..+++|+.|++++|+
T Consensus       287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence            999999999985333444556678999999999987

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.86  E-value=9.7e-05  Score=55.97  Aligned_cols=13  Identities=15%  Similarity=0.238  Sum_probs=5.5

Q ss_pred             CCCCCCceeeecc
Q 031657            5 GKLPSLEILRIEE   17 (155)
Q Consensus         5 ~~L~~L~~L~i~~   17 (155)
                      +.+++|++|.+++
T Consensus        60 ~~l~~L~~L~L~~   72 (263)
T 1xeu_A           60 QFFTNLKELHLSH   72 (263)
T ss_dssp             GGCTTCCEEECCS
T ss_pred             hhCCCCCEEECCC
Confidence            3344444444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.86  E-value=7.9e-05  Score=56.28  Aligned_cols=109  Identities=17%  Similarity=0.222  Sum_probs=59.5

Q ss_pred             CCCCCCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCccccc-CCCccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDF-GKEDIT   81 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~-~~~~~~   81 (155)
                      ++++++|++|.++++ .+..++.... ....+..+.+.++. ++.........+++|++|.+.+.. +..+.. ..   .
T Consensus        48 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~---~  121 (276)
T 2z62_A           48 FFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPI---G  121 (276)
T ss_dssp             TTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCC---T
T ss_pred             hccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCC-ccccCchhc---c
Confidence            566677777777665 3555543222 22222233333221 111121224456677777765542 222221 12   2


Q ss_pred             cCCcccEEeecCCccCcC--CCcCCCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKS--LPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~--lp~~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+..+ ++..  +|..+.++++|++|+++++.
T Consensus       122 ~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A          122 HLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             TCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             cCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC
Confidence            5788888888876 4554  57777778888888888764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.86  E-value=0.00014  Score=60.58  Aligned_cols=37  Identities=14%  Similarity=0.375  Sum_probs=27.3

Q ss_pred             cCCcccEEeecCCccCcCC-CcCCCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKSL-PDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~l-p~~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+.+| ++..+ |..+..+++|++|+++++.
T Consensus       474 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          474 TLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             GCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cCCCccEEECCCC-ccCccChhhhccccCCCEEECCCCc
Confidence            5778888888887 45544 5666778888888888774

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.85  E-value=3.5e-05  Score=59.68  Aligned_cols=19  Identities=32%  Similarity=0.471  Sum_probs=11.3

Q ss_pred             CCCCCCCceeeecccccce
Q 031657            4 LGKLPSLEILRIEEMVSVK   22 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~   22 (155)
                      ++++++|++|.++++..+.
T Consensus        72 l~~l~~L~~L~L~~~n~l~   90 (313)
T 1ogq_A           72 LANLPYLNFLYIGGINNLV   90 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEE
T ss_pred             HhCCCCCCeeeCCCCCccc
Confidence            5666777777776533333

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.84  E-value=0.00011  Score=52.42  Aligned_cols=63  Identities=19%  Similarity=0.204  Sum_probs=50.2

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP  119 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~  119 (155)
                      +..+++|++|++++. ++..++...-  ..+++|+.|.+.+. +++.+|.. +.++++|+.|.+++.+
T Consensus        53 ~~~l~~L~~L~Ls~N-~l~~i~~~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           53 FDHLVNLQQLYFNSN-KLTAIPTGVF--DKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             hcCCcCCCEEECCCC-CCCccChhHh--CCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCCC
Confidence            557899999999875 6777765431  16899999999886 78888876 7789999999998754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.84  E-value=5.2e-05  Score=59.35  Aligned_cols=64  Identities=19%  Similarity=0.178  Sum_probs=43.4

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcC-CCcCCCCCCCcCeEEEecCc
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKS-LPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~-lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ...+++|++|.+.++..+..++...  ...+++|+.|.+..+. +.. .|..+..+++|++|.++++.
T Consensus       145 ~~~l~~L~~L~l~~n~~~~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~  209 (353)
T 2z80_A          145 FSHLTKLQILRVGNMDTFTKIQRKD--FAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ  209 (353)
T ss_dssp             CTTCTTCCEEEEEESSSCCEECTTT--TTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSC
T ss_pred             hccCCCCcEEECCCCccccccCHHH--ccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCc
Confidence            4567778888777765566554221  1258889999998874 544 46677778888888887664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.84  E-value=7.6e-05  Score=61.57  Aligned_cols=110  Identities=21%  Similarity=0.211  Sum_probs=66.3

Q ss_pred             CCCCCCCceeeecccccceeeCcccccCcccccccccCcccc-CCCCCCcccCCCCcceeeccCcccCccc-ccCCCccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSS-SSSSSSSVVAFPKLEKLDLGIMLQLEEW-DFGKEDIT   81 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~L~~L~l~~~~~L~~~-~~~~~~~~   81 (155)
                      ++.+++|++|.++++.-....+..+.+...+..+.+.++.-. ...+ .....+++|++|+++++. +..+ +....   
T Consensus       417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~---  491 (570)
T 2z63_A          417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQ-LEQLSPTAFN---  491 (570)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECTTTTT---
T ss_pred             hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch-hhhhcccCCCEEECCCCc-cccCChhhhh---
Confidence            556667777777666422222222222233333444444211 0111 125567888888887764 4443 33333   


Q ss_pred             cCCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+.+| ++..+|. .+.++++|+.|++++++
T Consensus       492 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          492 SLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence            6899999999998 6877765 46789999999999855

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.83  E-value=2.1e-05  Score=54.08  Aligned_cols=61  Identities=16%  Similarity=0.120  Sum_probs=34.5

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcC-CCcCCCCCCCcCeEEEecCc
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKS-LPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~-lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ...+++|+.|.+.++ .+..+ ...   ..+++|+.|.+..+ ++.. +|....++++|+.|.++++.
T Consensus        38 ~~~l~~L~~L~l~~n-~l~~~-~~~---~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls~N~   99 (149)
T 2je0_A           38 TDEFEELEFLSTINV-GLTSI-ANL---PKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGNK   99 (149)
T ss_dssp             CTTCTTCCEEECTTS-CCCCC-TTC---CCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEECTTSC
T ss_pred             HhhcCCCcEEECcCC-CCCCc-hhh---hcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEECCCCc
Confidence            345666777766654 34444 111   15666777776665 3444 55444446667777766654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.83  E-value=1.7e-05  Score=61.44  Aligned_cols=111  Identities=14%  Similarity=0.051  Sum_probs=48.8

Q ss_pred             CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM   83 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~   83 (155)
                      ++++++|++|.++++.--..++..+.....+..+++.++.-....+ .....+++|++|.+.+..--..++....   .+
T Consensus        97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~---~l  172 (313)
T 1ogq_A           97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPDSYG---SF  172 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC-GGGGGCTTCCEEECCSSCCEEECCGGGG---CC
T ss_pred             HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC-hHHhcCCCCCeEECcCCcccCcCCHHHh---hh
Confidence            5566667777666653222344333322222333333221110111 1134455666666655431113332222   34


Q ss_pred             C-cccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           84 P-QVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        84 p-~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      + .|+.|.+..+.--..+|..+..+. |+.|+++++.
T Consensus       173 ~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            4 566666665532224555444444 6666665543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.81  E-value=5.2e-05  Score=62.43  Aligned_cols=37  Identities=22%  Similarity=0.268  Sum_probs=19.4

Q ss_pred             cCCcccEEeecCCccCcCCC-cCCCCCCCcCeEEEecC
Q 031657           82 IMPQVKSLSIFFCEKLKSLP-DQLLRSTTLESLEIADV  118 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp-~~~~~l~~L~~L~i~~c  118 (155)
                      .+++|+.|.+..+..+..+| ..+.++++|++|+++++
T Consensus       121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  158 (549)
T 2z81_A          121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL  158 (549)
T ss_dssp             TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             ccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence            45555666655554444444 23444555555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.81  E-value=3.9e-05  Score=60.84  Aligned_cols=106  Identities=16%  Similarity=0.154  Sum_probs=56.0

Q ss_pred             CCCCCCCceeeecccccceee-CcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMV-GDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      ++.+++|++|.++++. +..+ +..+.....+..+.+.++ .++..+. ....+++|++|+++++ .+..++....   .
T Consensus       244 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~---~  316 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNN-RLVALNL-YGQPIPTLKVLDLSHN-HLLHVERNQP---Q  316 (390)
T ss_dssp             GGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSS-CCCEEEC-SSSCCTTCCEEECCSS-CCCCCGGGHH---H
T ss_pred             HcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCC-cCcccCc-ccCCCCCCCEEECCCC-cceecCcccc---c
Confidence            4456667777776653 3333 222222222233333332 1111111 1235677777777665 4555544333   5


Q ss_pred             CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      +++|+.|.+.++ .+..++  +..+++|+.|.+++++
T Consensus       317 l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          317 FDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             HTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred             cCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence            777777777776 366665  3457778888887755

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.81  E-value=7.8e-05  Score=61.13  Aligned_cols=37  Identities=27%  Similarity=0.406  Sum_probs=21.0

Q ss_pred             cCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+.++ +++.+|.. +.++++|++|++++++
T Consensus       442 ~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          442 KLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             GCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence            4556666666655 45555554 4455666666665543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.78  E-value=8.8e-06  Score=69.13  Aligned_cols=37  Identities=19%  Similarity=0.302  Sum_probs=22.0

Q ss_pred             cCCcccEEeecCCccCcCCCcCCCCCCC-cCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQLLRSTT-LESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~-L~~L~i~~c~  119 (155)
                      .+++|+.|.+..+ ++..+|..+.++++ |++|.++++.
T Consensus       351 ~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~  388 (636)
T 4eco_A          351 SEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK  388 (636)
T ss_dssp             EEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCc
Confidence            4556666666555 35566666555666 6666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.78  E-value=0.00035  Score=49.27  Aligned_cols=108  Identities=20%  Similarity=0.178  Sum_probs=65.2

Q ss_pred             CCCCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCC
Q 031657            6 KLPSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMP   84 (155)
Q Consensus         6 ~L~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p   84 (155)
                      ..++|++|.+.++. +..++.... ....+..+.+.++ .++..+......+++|++|.+.+. ++..++...-  ..++
T Consensus        26 ~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~--~~l~  100 (177)
T 2o6r_A           26 IPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVF--DKLT  100 (177)
T ss_dssp             CCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT--TTCT
T ss_pred             CCCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHh--hCCc
Confidence            34678888887753 555554332 2222333333332 233333333456788888888764 4555543321  1578


Q ss_pred             cccEEeecCCccCcCCCcCC-CCCCCcCeEEEecCc
Q 031657           85 QVKSLSIFFCEKLKSLPDQL-LRSTTLESLEIADVP  119 (155)
Q Consensus        85 ~L~~L~i~~C~~L~~lp~~~-~~l~~L~~L~i~~c~  119 (155)
                      +|+.|.+.++ +++.+|... .++++|+.|++++.+
T Consensus       101 ~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          101 QLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence            8888888886 677887754 568888888887765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.77  E-value=9.8e-05  Score=57.97  Aligned_cols=101  Identities=13%  Similarity=0.072  Sum_probs=67.1

Q ss_pred             CCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcccE
Q 031657            9 SLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKS   88 (155)
Q Consensus         9 ~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~   88 (155)
                      .|+.|.++++ .++.++.+.........+.+.++..+...+......+++|++|++++. +++.++..     .|..|+.
T Consensus       155 ~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~-----~~~~L~~  227 (350)
T 4ay9_X          155 ESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY-----GLENLKK  227 (350)
T ss_dssp             SCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS-----SCTTCCE
T ss_pred             hhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh-----hhccchH
Confidence            3555555543 355554443332233334444555566665544567788888888775 57777643     5889999


Q ss_pred             EeecCCccCcCCCcCCCCCCCcCeEEEec
Q 031657           89 LSIFFCEKLKSLPDQLLRSTTLESLEIAD  117 (155)
Q Consensus        89 L~i~~C~~L~~lp~~~~~l~~L~~L~i~~  117 (155)
                      |.+.++.+++.+|. +.++++|+.+.+.+
T Consensus       228 L~~l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          228 LRARSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             EECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             hhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence            99999999999995 56699999998853

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.77  E-value=0.00038  Score=56.85  Aligned_cols=56  Identities=21%  Similarity=0.264  Sum_probs=27.9

Q ss_pred             CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657           55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c  118 (155)
                      .+++|++|++.++..+..+..     ..+++|+.|.+..+ +++.+|  +..+++|+.|.++++
T Consensus       146 ~l~~L~~L~l~~n~~~~~~~~-----~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N  201 (457)
T 3bz5_A          146 HNTQLTELDCHLNKKITKLDV-----TPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTN  201 (457)
T ss_dssp             TCTTCCEEECTTCSCCCCCCC-----TTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSS
T ss_pred             cCCcCCEEECCCCCccccccc-----ccCCcCCEEECCCC-ccceec--cccCCCCCEEECcCC
Confidence            344455555444433333311     14566666666655 455555  334556666655544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.77  E-value=3.7e-05  Score=54.52  Aligned_cols=107  Identities=14%  Similarity=0.091  Sum_probs=66.6

Q ss_pred             CCCCCCCceeeecccccceeeCcccccCc-ccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLGIG-ICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      +..+++|++|.++++ .+..++. +.... .+..+.+.++ .++..  .....+++|++|.+++. .+..++...  ...
T Consensus        15 ~~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~--~~~   86 (176)
T 1a9n_A           15 YTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDN-EIRKL--DGFPLLRRLKTLLVNNN-RICRIGEGL--DQA   86 (176)
T ss_dssp             EECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSS-CCCEE--CCCCCCSSCCEEECCSS-CCCEECSCH--HHH
T ss_pred             cCCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCC-CCCcc--cccccCCCCCEEECCCC-cccccCcch--hhc
Confidence            456778899999877 4555532 22211 2233333333 12222  12557888888888775 355554332  026


Q ss_pred             CCcccEEeecCCccCcCCCc--CCCCCCCcCeEEEecCc
Q 031657           83 MPQVKSLSIFFCEKLKSLPD--QLLRSTTLESLEIADVP  119 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~--~~~~l~~L~~L~i~~c~  119 (155)
                      +++|+.|.+.++ ++..+|.  .+.++++|+.|.+++++
T Consensus        87 l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~  124 (176)
T 1a9n_A           87 LPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP  124 (176)
T ss_dssp             CTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             CCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC
Confidence            888999988887 5777776  56678888888888876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.76  E-value=3.7e-05  Score=64.81  Aligned_cols=101  Identities=16%  Similarity=0.228  Sum_probs=59.8

Q ss_pred             CCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcccE
Q 031657            9 SLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKS   88 (155)
Q Consensus         9 ~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~   88 (155)
                      .|+.|.++++ .+..++. +.....+..+.++++ .++..+. .+..+++|+.|.+++. .+..++ ..+   .+++|+.
T Consensus       442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~-~~~~l~~L~~L~Ls~N-~l~~lp-~l~---~l~~L~~  512 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPP-ALAALRCLEVLQASDN-ALENVD-GVA---NLPRLQE  512 (567)
T ss_dssp             TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCG-GGGGCTTCCEEECCSS-CCCCCG-GGT---TCSSCCE
T ss_pred             CceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccch-hhhcCCCCCEEECCCC-CCCCCc-ccC---CCCCCcE
Confidence            3566666655 3444443 322222223333322 1222222 2557888888888764 455555 333   6888888


Q ss_pred             EeecCCccCcCC--CcCCCCCCCcCeEEEecCc
Q 031657           89 LSIFFCEKLKSL--PDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        89 L~i~~C~~L~~l--p~~~~~l~~L~~L~i~~c~  119 (155)
                      |.+.++ ++..+  |..+..+++|+.|.+++++
T Consensus       513 L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          513 LLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             EECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             EECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc
Confidence            888876 67777  7777778888888888765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.74  E-value=0.00011  Score=56.46  Aligned_cols=60  Identities=18%  Similarity=0.212  Sum_probs=42.9

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ...+++|+.|.++++ .+..++.    ...+++|+.|.+.++ .++.++. +..+++|+.|++++++
T Consensus       152 l~~l~~L~~L~L~~N-~l~~~~~----l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          152 LSRLTKLDTLSLEDN-QISDIVP----LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             GGGCTTCSEEECCSS-CCCCCGG----GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred             hccCCCCCEEEccCC-ccccchh----hcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCc
Confidence            345666666666654 3333332    226899999999998 6888875 6679999999999865

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.74  E-value=0.00017  Score=58.61  Aligned_cols=36  Identities=14%  Similarity=0.209  Sum_probs=19.4

Q ss_pred             cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+.+| ++..++ .+.++++|+.|++++|.
T Consensus       329 ~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          329 SLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             GCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred             cCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence            4556666666555 344443 33345666666665553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.73  E-value=0.00048  Score=50.62  Aligned_cols=106  Identities=14%  Similarity=0.104  Sum_probs=59.8

Q ss_pred             CCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcc
Q 031657            8 PSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQV   86 (155)
Q Consensus         8 ~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L   86 (155)
                      ++|++|.+.++ .+..++.... +...+..+.+.++ .++......+..+++|++|++++. .+..++...-  ..+++|
T Consensus        32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f--~~l~~L  106 (220)
T 2v9t_B           32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITELPKSLF--EGLFSL  106 (220)
T ss_dssp             TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTT--TTCTTC
T ss_pred             cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHc--cCCCCC
Confidence            47888888876 4666654322 2222233333332 122222223556777777777663 4555543321  147788


Q ss_pred             cEEeecCCccCcCCC-cCCCCCCCcCeEEEecCc
Q 031657           87 KSLSIFFCEKLKSLP-DQLLRSTTLESLEIADVP  119 (155)
Q Consensus        87 ~~L~i~~C~~L~~lp-~~~~~l~~L~~L~i~~c~  119 (155)
                      +.|.+..+ +++.++ ..+..+++|+.|.++++.
T Consensus       107 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  139 (220)
T 2v9t_B          107 QLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK  139 (220)
T ss_dssp             CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc
Confidence            88888776 466653 456667888888877654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.72  E-value=0.00032  Score=56.34  Aligned_cols=13  Identities=23%  Similarity=0.209  Sum_probs=6.5

Q ss_pred             cCCCCcceeeccC
Q 031657           54 VAFPKLEKLDLGI   66 (155)
Q Consensus        54 ~~f~~L~~L~l~~   66 (155)
                      ..+++|++|++++
T Consensus        76 ~~l~~L~~L~Ls~   88 (455)
T 3v47_A           76 RGLSSLIILKLDY   88 (455)
T ss_dssp             TTCTTCCEEECTT
T ss_pred             cccccCCEEeCCC
Confidence            3445555555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.70  E-value=2.7e-05  Score=55.24  Aligned_cols=107  Identities=12%  Similarity=0.145  Sum_probs=67.6

Q ss_pred             CCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCccc
Q 031657            8 PSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVK   87 (155)
Q Consensus         8 ~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~   87 (155)
                      ++|++|.++++ .+..+ ..+.....+..+.+.++ .++..+......+++|+.|.+++. .+..++... ....+++|+
T Consensus        42 ~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~-~l~~l~~L~  116 (176)
T 1a9n_A           42 DQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLD-PLASLKSLT  116 (176)
T ss_dssp             TCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGG-GGGGCTTCC
T ss_pred             CCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhhH-hhhcCCCCC
Confidence            38888888876 45555 33333233333344333 122222221357899999999875 355555300 122699999


Q ss_pred             EEeecCCccCcCCCcC----CCCCCCcCeEEEecCcc
Q 031657           88 SLSIFFCEKLKSLPDQ----LLRSTTLESLEIADVPI  120 (155)
Q Consensus        88 ~L~i~~C~~L~~lp~~----~~~l~~L~~L~i~~c~~  120 (155)
                      .|.+.+++ +..+|..    +..+++|+.|+++++..
T Consensus       117 ~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          117 YLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            99999984 6777774    66799999999988873

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.69  E-value=1.8e-05  Score=57.30  Aligned_cols=68  Identities=19%  Similarity=0.282  Sum_probs=50.3

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCcccc----CCcccEEeecCCccCcC--CCcCCCCCCCcCeEEEecCcchhh
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITI----MPQVKSLSIFFCEKLKS--LPDQLLRSTTLESLEIADVPIVEE  123 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~----~p~L~~L~i~~C~~L~~--lp~~~~~l~~L~~L~i~~c~~l~~  123 (155)
                      ...+++|+.|.+.+|..+.......  ...    .++|+.|.+..|++++.  +- .+.++++|++|.+++|+.+..
T Consensus        81 L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A           81 MEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred             hcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence            3478999999999999886543211  112    24799999999998863  21 234589999999999997764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.68  E-value=0.00013  Score=57.18  Aligned_cols=63  Identities=11%  Similarity=0.149  Sum_probs=34.1

Q ss_pred             CCCCCCCceeeecccccceeeCccccc-CcccccccccCccccCCCCCCcccCCCCcceeeccC
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLG-IGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGI   66 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~   66 (155)
                      ++.|++|++|.|+++.-++.++.+... ........+.++..++..+......+++|++|.+.+
T Consensus        50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~  113 (350)
T 4ay9_X           50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN  113 (350)
T ss_dssp             STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEE
T ss_pred             HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccc
Confidence            788999999999888766667654322 111122222233334443333344555666655543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.67  E-value=0.0002  Score=54.22  Aligned_cols=105  Identities=14%  Similarity=0.221  Sum_probs=69.9

Q ss_pred             CCCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccc
Q 031657            2 PPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDIT   81 (155)
Q Consensus         2 p~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~   81 (155)
                      |+++.+++|++|.++++ .+..++... . ..+..+.+.++ .++..+  ....+++|+.|++++. +++.++.    ..
T Consensus        79 ~~l~~l~~L~~L~L~~N-~l~~l~~~~-~-~~L~~L~L~~N-~l~~~~--~l~~l~~L~~L~Ls~N-~i~~~~~----l~  147 (263)
T 1xeu_A           79 SPLKDLTKLEELSVNRN-RLKNLNGIP-S-ACLSRLFLDNN-ELRDTD--SLIHLKNLEILSIRNN-KLKSIVM----LG  147 (263)
T ss_dssp             GGGTTCSSCCEEECCSS-CCSCCTTCC-C-SSCCEEECCSS-CCSBSG--GGTTCTTCCEEECTTS-CCCBCGG----GG
T ss_pred             hhhccCCCCCEEECCCC-ccCCcCccc-c-CcccEEEccCC-ccCCCh--hhcCcccccEEECCCC-cCCCChH----Hc
Confidence            34778999999999987 455554322 1 33334444443 222222  2567889999999775 3555542    22


Q ss_pred             cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+..+ ++..+ ..+..+++|+.|++++++
T Consensus       148 ~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          148 FLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             GCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred             cCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCCc
Confidence            6899999999987 57776 556679999999998765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.66  E-value=0.00018  Score=61.11  Aligned_cols=60  Identities=18%  Similarity=0.185  Sum_probs=42.9

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ...+++|+.|.++++ .+..+.. .   ..+++|+.|.+..| .+..++. +.++++|+.|.+++++
T Consensus       149 l~~l~~L~~L~Ls~N-~l~~~~~-l---~~l~~L~~L~Ls~N-~i~~l~~-l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          149 LSRLTKLDTLSLEDN-QISDIVP-L---AGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE  208 (605)
T ss_dssp             GGSCTTCSEEECCSS-CCCCCGG-G---TTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCSEE
T ss_pred             hcccCCCCEEECcCC-cCCCchh-h---ccCCCCCEEECcCC-CCCCChH-HccCCCCCEEEccCCc
Confidence            445677777777665 2333322 2   26899999999998 6887764 5669999999998875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.66  E-value=0.00049  Score=51.86  Aligned_cols=106  Identities=15%  Similarity=0.147  Sum_probs=65.9

Q ss_pred             CCCceeeecccccceeeCcc-cccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcc
Q 031657            8 PSLEILRIEEMVSVKMVGDE-FLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQV   86 (155)
Q Consensus         8 ~~L~~L~i~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L   86 (155)
                      ++|++|.++++ .+..++.. +.....+..+.+.++ .++.........+++|++|++++.. +..++...  ...+++|
T Consensus        28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~--~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGA--FSGLSSL  102 (276)
T ss_dssp             TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTT--TTTCTTC
T ss_pred             CCccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhh--hcCCccc
Confidence            46999999877 46666653 322333344444444 2233332335567888888887753 44443221  1268889


Q ss_pred             cEEeecCCccCcCCCc-CCCCCCCcCeEEEecCc
Q 031657           87 KSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVP  119 (155)
Q Consensus        87 ~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~  119 (155)
                      +.|.+..+ ++..++. .+.++++|++|.++++.
T Consensus       103 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~  135 (276)
T 2z62_A          103 QKLVAVET-NLASLENFPIGHLKTLKELNVAHNL  135 (276)
T ss_dssp             CEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred             cEEECCCC-CccccCchhcccCCCCCEEECcCCc
Confidence            99998887 4666655 56678899999988764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.66  E-value=4.9e-05  Score=67.28  Aligned_cols=39  Identities=13%  Similarity=0.105  Sum_probs=24.2

Q ss_pred             CC--CCCCCceeeecccccceeeCcccccCcccccccccCc
Q 031657            4 LG--KLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGT   42 (155)
Q Consensus         4 l~--~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~   42 (155)
                      ++  +|++|++|.+++|.-...+|..+.....+..+.+.++
T Consensus       485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            55  8888888888887656666655544333344444433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.65  E-value=0.00045  Score=53.48  Aligned_cols=103  Identities=16%  Similarity=0.220  Sum_probs=56.8

Q ss_pred             CCCceeeecccccceeeCcc-cccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcc
Q 031657            8 PSLEILRIEEMVSVKMVGDE-FLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQV   86 (155)
Q Consensus         8 ~~L~~L~i~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L   86 (155)
                      ++|++|.++++. +..++.+ +.....+..+.+.++. ++.........+++|++|++.+. .+..++..     .+++|
T Consensus        54 ~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~-----~~~~L  125 (332)
T 2ft3_A           54 PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN-HLVEIPPN-----LPSSL  125 (332)
T ss_dssp             TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSS-CCCSCCSS-----CCTTC
T ss_pred             CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCC-cCCccCcc-----ccccC
Confidence            567777777653 5555432 2222222333333321 11111122456778888887664 34444432     34778


Q ss_pred             cEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657           87 KSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP  119 (155)
Q Consensus        87 ~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~  119 (155)
                      +.|.+..+ ++..+|.. +.++++|+.|.++++.
T Consensus       126 ~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~  158 (332)
T 2ft3_A          126 VELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNP  158 (332)
T ss_dssp             CEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred             CEEECCCC-ccCccCHhHhCCCccCCEEECCCCc
Confidence            88887776 46666653 5567888888877664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.64  E-value=0.0005  Score=49.61  Aligned_cols=106  Identities=16%  Similarity=0.144  Sum_probs=68.0

Q ss_pred             CCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCccc
Q 031657            8 PSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVK   87 (155)
Q Consensus         8 ~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~   87 (155)
                      ++|++|.+.++ .+..++..+.....+..+.+.+. .++......+..+++|++|++++. .+..++...  ...+++|+
T Consensus        31 ~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~--f~~l~~L~  105 (193)
T 2wfh_A           31 RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRT--FDGLKSLR  105 (193)
T ss_dssp             TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTT--TTTCTTCC
T ss_pred             CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHH--hCCCCCCC
Confidence            47888888765 46666654443333333444332 233333333567888999988774 355554321  12688999


Q ss_pred             EEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657           88 SLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP  119 (155)
Q Consensus        88 ~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~  119 (155)
                      .|.+.++ ++..+|.. +..+++|+.|.+++.+
T Consensus       106 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          106 LLSLHGN-DISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             EEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence            9999886 68888875 5678999999987643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.63  E-value=2.7e-06  Score=65.92  Aligned_cols=16  Identities=6%  Similarity=-0.072  Sum_probs=10.7

Q ss_pred             CCCCCCCceeeecccc
Q 031657            4 LGKLPSLEILRIEEMV   19 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~   19 (155)
                      +..+++|++|.+++|.
T Consensus        89 ~~~~~~L~~L~L~~~~  104 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSV  104 (336)
T ss_dssp             CCCCBCCCEEECTTCE
T ss_pred             hccCCCCCEEEccCCC
Confidence            4556777777777663

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.63  E-value=0.00094  Score=56.43  Aligned_cols=62  Identities=16%  Similarity=0.186  Sum_probs=31.3

Q ss_pred             cCCCCcceeeccCcc--cCcccccCCCccccCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657           54 VAFPKLEKLDLGIML--QLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP  119 (155)
Q Consensus        54 ~~f~~L~~L~l~~~~--~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~  119 (155)
                      ..+++|+.|.+.++.  .+..++....   .+++|+.|.+.++ ++..++.. +..+++|++|+++++.
T Consensus       451 ~~~~~L~~L~l~~n~l~~~~~~p~~~~---~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~  515 (680)
T 1ziw_A          451 ALVPSLQRLMLRRVALKNVDSSPSPFQ---PLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNN  515 (680)
T ss_dssp             TTCTTCCEEECTTSCCBCTTCSSCTTT---TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hcCcccccchhccccccccccCCcccc---cCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCC
Confidence            345555555554432  1122222222   4566666666665 45555543 4456666666666553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.62  E-value=0.00064  Score=59.39  Aligned_cols=112  Identities=11%  Similarity=0.041  Sum_probs=49.1

Q ss_pred             CCCCCCCceeeecccccceeeCc-ccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGD-EFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      +++|++|++|.++++.....+++ .+.....+..+.+.++. +..........+++|++|++.++.--..++.. .....
T Consensus        44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~  121 (844)
T 3j0a_A           44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD-GYFRN  121 (844)
T ss_dssp             CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTT-CCCSS
T ss_pred             CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccC-ccccc
Confidence            55666666666666544444422 22222222222332221 11111112445556666666554211112211 00114


Q ss_pred             CCcccEEeecCCccCcCCC--cCCCCCCCcCeEEEecC
Q 031657           83 MPQVKSLSIFFCEKLKSLP--DQLLRSTTLESLEIADV  118 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp--~~~~~l~~L~~L~i~~c  118 (155)
                      +++|+.|.+..+ ++..++  ..+.++++|++|.++++
T Consensus       122 L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          122 LKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             CSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             cCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC
Confidence            666666666665 343332  23455666666666654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.61  E-value=0.00028  Score=58.58  Aligned_cols=58  Identities=28%  Similarity=0.353  Sum_probs=35.8

Q ss_pred             CCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657           57 PKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP  119 (155)
Q Consensus        57 ~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~  119 (155)
                      ++|+.|+++++ +++.++.+..   .+++|+.|.+.++ +++.+|.. +..+++|+.|++++.+
T Consensus       450 ~~L~~L~L~~N-~l~~ip~~~~---~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          450 PKVKVLDLHNN-RIMSIPKDVT---HLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTT---SSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred             CcCCEEECCCC-cCcccChhhc---CCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence            35555555554 4444444333   5677777777775 56777765 5667777777776644

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.60  E-value=0.00035  Score=55.08  Aligned_cols=35  Identities=20%  Similarity=0.287  Sum_probs=17.7

Q ss_pred             cCCcccEEeecCCccCcCCCcCC----CCCCCcCeEEEec
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQL----LRSTTLESLEIAD  117 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~----~~l~~L~~L~i~~  117 (155)
                      .+++|+.|.+..+ ++..+|...    .++++|+.|++++
T Consensus       134 ~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A          134 DMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             TCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCS
T ss_pred             CcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCC
Confidence            3555666665554 455555432    2355555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.58  E-value=0.00068  Score=55.30  Aligned_cols=58  Identities=16%  Similarity=0.087  Sum_probs=35.3

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ...+++|+.|.++++. +..++.      ..++|+.|.+.+| ++..+|. +..+++|++|+++++.
T Consensus       191 ~~~l~~L~~L~l~~N~-l~~l~~------~~~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          191 LQNLPFLTAIYADNNS-LKKLPD------LPLSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNNL  248 (454)
T ss_dssp             CTTCTTCCEEECCSSC-CSSCCC------CCTTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSSC
T ss_pred             ccCCCCCCEEECCCCc-CCcCCC------CcCcccEEECcCC-cCCcccc-cCCCCCCCEEECCCCc
Confidence            4455666666665532 222221      2357777777776 5667774 5567888888887753

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.58  E-value=0.00014  Score=56.27  Aligned_cols=60  Identities=25%  Similarity=0.191  Sum_probs=44.6

Q ss_pred             CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|++|+++++ .+..++....   .+++|+.|.+.++ +++.+|..+..+++|+.|++++++
T Consensus       189 ~l~~L~~L~Ls~N-~l~~l~~~~~---~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          189 VFAKLKTLDLSSN-KLAFMGPEFQ---SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             CCTTCCEEECCSS-CCCEECGGGG---GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred             ccccCCEEECCCC-cCCcchhhhc---ccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence            4677777777664 3445543332   6888999999887 688888888888999999998765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.58  E-value=0.00012  Score=61.45  Aligned_cols=106  Identities=16%  Similarity=0.154  Sum_probs=61.0

Q ss_pred             CCCCCCCceeeecccccceee-CcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMV-GDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      ++.+++|++|.++++. +..+ +..+.....+..+.+.++ .++..+. ....+++|+.|+++++ .+..++....   .
T Consensus       250 l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~~l~~L~~L~Ls~N-~l~~i~~~~~---~  322 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNN-RLVALNL-YGQPIPTLKVLDLSHN-HLLHVERNQP---Q  322 (597)
T ss_dssp             GGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTS-CCCEEEC-SSSCCTTCCEEECCSS-CCCCCGGGHH---H
T ss_pred             hccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCC-CCCCCCc-ccccCCCCcEEECCCC-CCCccCcccc---c
Confidence            5567777777777664 3333 333323233333333332 1111111 1345778888888775 3445554433   6


Q ss_pred             CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      +++|+.|.+.+| ++..++  +..+++|+.|.+++++
T Consensus       323 l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          323 FDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             HTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred             CCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence            788888888887 466665  3457888888888766

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.57  E-value=0.00084  Score=55.71  Aligned_cols=35  Identities=26%  Similarity=0.469  Sum_probs=30.2

Q ss_pred             CcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           84 PQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        84 p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ++|+.|.+..+ +++.+|..+.++++|+.|+++++.
T Consensus       450 ~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~  484 (562)
T 3a79_B          450 PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ  484 (562)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC
T ss_pred             CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC
Confidence            68999999887 788999887789999999998864

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.55  E-value=0.00029  Score=54.57  Aligned_cols=63  Identities=22%  Similarity=0.361  Sum_probs=42.8

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ...+++|+.|++++. .+..++...  ...+++|+.|.+.++ ++..+|.++..+++|+.|.++++.
T Consensus       213 l~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          213 LLRYSKLYRLGLGHN-QIRMIENGS--LSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             STTCTTCSCCBCCSS-CCCCCCTTG--GGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC
T ss_pred             hcCCCCCCEEECCCC-cCCcCChhH--hhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC
Confidence            445566666666653 233332211  126888999999887 688888888788899999988765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.52  E-value=0.00026  Score=58.21  Aligned_cols=63  Identities=13%  Similarity=0.085  Sum_probs=38.3

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEec
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIAD  117 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~  117 (155)
                      ...+++|++|++.++..+..++...  ...+++|+.|.+..+.--...|..+..+++|++|.+++
T Consensus       119 ~~~l~~L~~L~L~~n~~~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  181 (549)
T 2z81_A          119 FPNLTNLQTLRIGNVETFSEIRRID--FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL  181 (549)
T ss_dssp             CTTCTTCCEEEEEESSSCCEECTTT--TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             hhccCCccEEECCCCccccccCHhh--hhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence            4456777777777665555554211  12688899999888743334566665555555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.52  E-value=0.0003  Score=50.64  Aligned_cols=105  Identities=14%  Similarity=0.224  Sum_probs=64.2

Q ss_pred             CCceeeecccccceeeCcc--cccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcc
Q 031657            9 SLEILRIEEMVSVKMVGDE--FLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQV   86 (155)
Q Consensus         9 ~L~~L~i~~~~~l~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L   86 (155)
                      +|++|.+.++ .+..++..  +.....+..+.+.+. .++.........+++|++|++++. ++..++...  ...+++|
T Consensus        30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L  104 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-KIKEISNKM--FLGLHQL  104 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSS--STTCTTC
T ss_pred             CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC-cCCccCHHH--hcCCCCC
Confidence            7888888776 45555442  222222333333332 222222223557888999998774 455554331  1158899


Q ss_pred             cEEeecCCccCcCC-CcCCCCCCCcCeEEEecCc
Q 031657           87 KSLSIFFCEKLKSL-PDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        87 ~~L~i~~C~~L~~l-p~~~~~l~~L~~L~i~~c~  119 (155)
                      +.|.+..+ ++..+ |..+..+++|+.|.+++.+
T Consensus       105 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          105 KTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            99999887 56654 6677788999999987644

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.51  E-value=0.00022  Score=57.94  Aligned_cols=59  Identities=17%  Similarity=0.197  Sum_probs=41.6

Q ss_pred             cCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           54 VAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        54 ~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ..+++|+.|++.++ .+..++.    ...+++|+.|.+.+|+ +..++. +.++++|+.|.+++|+
T Consensus       328 ~~l~~L~~L~l~~n-~l~~~~~----l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          328 SSLTKLQRLFFYNN-KVSDVSS----LANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA  386 (466)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGG----GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE
T ss_pred             ccCccCCEeECCCC-ccCCchh----hccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc
Confidence            45666777766665 3443321    2268999999999984 666655 5679999999998875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.51  E-value=0.00049  Score=48.62  Aligned_cols=63  Identities=25%  Similarity=0.271  Sum_probs=49.4

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP  119 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~  119 (155)
                      ...+++|++|++++. +++.++...-  ..+++|+.|.+... +++.+|.. +.++++|+.|.+++-+
T Consensus        50 ~~~l~~L~~L~Ls~N-~l~~l~~~~f--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           50 FDRLTQLTRLDLDNN-QLTVLPAGVF--DKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTTCTTCSEEECCSS-CCCCCCTTTT--TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hcCcccCCEEECCCC-CcCccChhhc--cCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            557899999999875 5776665431  26899999999886 68888875 6779999999998643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.51  E-value=0.00062  Score=59.49  Aligned_cols=106  Identities=16%  Similarity=0.213  Sum_probs=45.4

Q ss_pred             CCCCceeeecccccceeeC-cccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCccc-ccCCCccccCC
Q 031657            7 LPSLEILRIEEMVSVKMVG-DEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEW-DFGKEDITIMP   84 (155)
Q Consensus         7 L~~L~~L~i~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~-~~~~~~~~~~p   84 (155)
                      .++|++|.++++. +..+. ..+.....+..+.+.++.............+++|++|.+.++. +..+ +....   .++
T Consensus        23 p~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~---~l~   97 (844)
T 3j0a_A           23 LNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQ---GLF   97 (844)
T ss_dssp             CTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSC---SCS
T ss_pred             CCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHcc---CCc
Confidence            3455566655542 33332 2222222233334444322222222224455555555555432 2222 22222   455


Q ss_pred             cccEEeecCCccCcC-CCcC--CCCCCCcCeEEEecC
Q 031657           85 QVKSLSIFFCEKLKS-LPDQ--LLRSTTLESLEIADV  118 (155)
Q Consensus        85 ~L~~L~i~~C~~L~~-lp~~--~~~l~~L~~L~i~~c  118 (155)
                      +|+.|.+..| ++.. +|..  +.++++|++|+++++
T Consensus        98 ~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N  133 (844)
T 3j0a_A           98 HLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN  133 (844)
T ss_dssp             SCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred             ccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC
Confidence            5556665555 2332 3332  445556666655554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.44  E-value=0.00044  Score=58.45  Aligned_cols=61  Identities=13%  Similarity=0.071  Sum_probs=32.4

Q ss_pred             ccCCCCcceeeccCcccCccccc-CCCccccCCcccEEeecCCccCcCC-CcCCCCCCCcCeEEEecC
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDF-GKEDITIMPQVKSLSIFFCEKLKSL-PDQLLRSTTLESLEIADV  118 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~-~~~~~~~~p~L~~L~i~~C~~L~~l-p~~~~~l~~L~~L~i~~c  118 (155)
                      ...+++|++|++.++ .+..++. ..+   .+++|+.|.+..+. +... |..+.++++|++|.++++
T Consensus        93 ~~~l~~L~~L~L~~n-~l~~~~~~~~~---~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n  155 (680)
T 1ziw_A           93 FAFCTNLTELHLMSN-SIQKIKNNPFV---KQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNN  155 (680)
T ss_dssp             TTTCTTCSEEECCSS-CCCCCCSCTTT---TCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSS
T ss_pred             hccCCCCCEEECCCC-ccCccChhHcc---ccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCC
Confidence            445666666666554 2333331 111   46667777766663 3333 334455666666666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.44  E-value=0.00059  Score=56.56  Aligned_cols=109  Identities=14%  Similarity=0.148  Sum_probs=58.9

Q ss_pred             CCCCCCCceeeecccccceee-CcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMV-GDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      +..+++|+.|.+.++.....+ +..+.....+..+++.++ .++..+...+..+++|++|.+++. ++..++...  ...
T Consensus       465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~--~~~  540 (635)
T 4g8a_A          465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFP--YKC  540 (635)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGG--GTT
T ss_pred             cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChhH--HhC
Confidence            344555666666555433322 222222222233334333 223222233556778888888764 455544321  115


Q ss_pred             CCcccEEeecCCccCcCCC-cCCCCC-CCcCeEEEec
Q 031657           83 MPQVKSLSIFFCEKLKSLP-DQLLRS-TTLESLEIAD  117 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp-~~~~~l-~~L~~L~i~~  117 (155)
                      +++|+.|.+..+ ++..++ ..+.++ ++|+.|++++
T Consensus       541 l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          541 LNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             CTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred             CCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence            788889988886 566654 455566 6899998864

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.38  E-value=0.0018  Score=49.98  Aligned_cols=37  Identities=14%  Similarity=0.291  Sum_probs=25.7

Q ss_pred             cCCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+..+ .+..++. .+..+++|++|+++++.
T Consensus       214 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          214 GLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCc
Confidence            5677888888776 4555543 45567888888888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.37  E-value=0.0025  Score=50.07  Aligned_cols=105  Identities=14%  Similarity=0.134  Sum_probs=63.4

Q ss_pred             CCceeeecccccceeeCcccc--cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcc
Q 031657            9 SLEILRIEEMVSVKMVGDEFL--GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQV   86 (155)
Q Consensus         9 ~L~~L~i~~~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L   86 (155)
                      .+++|.++++ .+..++.+..  +...+..+.+.++ .++......+..+++|++|++++. +++.++...-  ..+++|
T Consensus        40 ~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~--~~l~~L  114 (361)
T 2xot_A           40 YTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLF--SDLQAL  114 (361)
T ss_dssp             TCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTT--TTCTTC
T ss_pred             CCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHh--CCCcCC
Confidence            4777777765 4666654433  2222223333222 222222223557888899988774 3666654321  268899


Q ss_pred             cEEeecCCccCcCC-CcCCCCCCCcCeEEEecCc
Q 031657           87 KSLSIFFCEKLKSL-PDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        87 ~~L~i~~C~~L~~l-p~~~~~l~~L~~L~i~~c~  119 (155)
                      +.|.+.++ ++..+ |..+..+++|+.|.++++.
T Consensus       115 ~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~  147 (361)
T 2xot_A          115 EVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQ  147 (361)
T ss_dssp             CEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCC-cccEECHHHhCCcccCCEEECCCCc
Confidence            99999887 46655 4567778999999988764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.36  E-value=0.0003  Score=57.93  Aligned_cols=60  Identities=25%  Similarity=0.191  Sum_probs=43.1

Q ss_pred             CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|++++. .+..++....   .+++|+.|.+.++ ++..+|..+..+++|+.|.+++++
T Consensus       189 ~l~~L~~L~Ls~N-~l~~~~~~~~---~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          189 VFAKLKTLDLSSN-KLAFMGPEFQ---SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             CCTTCCEEECCSS-CCCEECGGGG---GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred             cCCCCCEEECCCC-CCCCCCHhHc---CCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence            4667777777654 3444443332   6788888988886 577888888788899999888765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.36  E-value=0.00045  Score=56.55  Aligned_cols=103  Identities=17%  Similarity=0.112  Sum_probs=57.5

Q ss_pred             CCCceeeecccccceeeCc-ccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcc
Q 031657            8 PSLEILRIEEMVSVKMVGD-EFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQV   86 (155)
Q Consensus         8 ~~L~~L~i~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L   86 (155)
                      ++|++|.++++. +..++. .+.+...+..+.+.++. ++.........+++|++|++++. +++.++..     .+++|
T Consensus        21 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-----~l~~L   92 (520)
T 2z7x_B           21 QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHN-KLVKISCH-----PTVNL   92 (520)
T ss_dssp             TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSS-CCCEEECC-----CCCCC
T ss_pred             ccccEEECCCCc-ccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCC-ceeecCcc-----ccCCc
Confidence            566777776653 444432 22222222333333321 11111112456788888888765 45555544     47788


Q ss_pred             cEEeecCCccCcC--CCcCCCCCCCcCeEEEecCc
Q 031657           87 KSLSIFFCEKLKS--LPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        87 ~~L~i~~C~~L~~--lp~~~~~l~~L~~L~i~~c~  119 (155)
                      +.|.+..+. +..  +|..+.++++|++|+++++.
T Consensus        93 ~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~  126 (520)
T 2z7x_B           93 KHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH  126 (520)
T ss_dssp             SEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred             cEEeccCCc-cccccchhhhccCCcceEEEecCcc
Confidence            888888773 554  45666677888888887754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.36  E-value=0.00032  Score=54.09  Aligned_cols=14  Identities=29%  Similarity=0.553  Sum_probs=8.2

Q ss_pred             CCCCCCceeeeccc
Q 031657            5 GKLPSLEILRIEEM   18 (155)
Q Consensus         5 ~~L~~L~~L~i~~~   18 (155)
                      +.+++|++|.++++
T Consensus       118 ~~l~~L~~L~Ls~N  131 (312)
T 1wwl_A          118 ATGPDLNILNLRNV  131 (312)
T ss_dssp             CCSCCCSEEEEESC
T ss_pred             hcCCCccEEEccCC
Confidence            55566666666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.35  E-value=0.0031  Score=46.24  Aligned_cols=105  Identities=10%  Similarity=0.126  Sum_probs=57.2

Q ss_pred             CCceeeecccccceeeCc-c-cccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcc
Q 031657            9 SLEILRIEEMVSVKMVGD-E-FLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQV   86 (155)
Q Consensus         9 ~L~~L~i~~~~~l~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L   86 (155)
                      .+++|.++++ .+..++. + +.....+..+.+.++ .++......+..+++|++|++++. .+..++...  ...+++|
T Consensus        33 ~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L  107 (220)
T 2v70_A           33 YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQHKM--FKGLESL  107 (220)
T ss_dssp             TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGG--GTTCSSC
T ss_pred             CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccCHhH--hcCCcCC
Confidence            5677777765 3555532 2 212222223333222 122222223556777777777664 334443221  1157788


Q ss_pred             cEEeecCCccCcCC-CcCCCCCCCcCeEEEecCc
Q 031657           87 KSLSIFFCEKLKSL-PDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        87 ~~L~i~~C~~L~~l-p~~~~~l~~L~~L~i~~c~  119 (155)
                      +.|.+.++ ++..+ |..+..+++|+.|.++++.
T Consensus       108 ~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~  140 (220)
T 2v70_A          108 KTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQ  140 (220)
T ss_dssp             CEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred             CEEECCCC-cCCeECHhHcCCCccCCEEECCCCc
Confidence            88888776 46655 4566678888888887653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.35  E-value=0.00062  Score=57.30  Aligned_cols=91  Identities=9%  Similarity=0.025  Sum_probs=65.3

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCcchhhhhccCCCCC
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEENFKKDTGKD  132 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~  132 (155)
                      +..+++|+.|.+++. .+..++...+   .+++|+.|.+..+ +++.+| .+.++++|+.|.++++. +....   ....
T Consensus       459 ~~~l~~L~~L~Ls~N-~l~~lp~~~~---~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~---~p~~  528 (567)
T 1dce_A          459 LEQLLLVTHLDLSHN-RLRALPPALA---ALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNR-LQQSA---AIQP  528 (567)
T ss_dssp             GGGGTTCCEEECCSS-CCCCCCGGGG---GCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSC-CCSSS---TTGG
T ss_pred             ccccccCcEeecCcc-cccccchhhh---cCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCCC-CCCCC---CcHH
Confidence            678899999999875 5667765554   7999999999987 688898 77789999999998864 21111   0122


Q ss_pred             cCcccccCeeEecceeccCCC
Q 031657          133 WSKISHIPNILISRRYEQGGP  153 (155)
Q Consensus       133 w~~i~~i~~i~~~~~~~~~~~  153 (155)
                      ...+..+..+.+.+..+.+.|
T Consensus       529 l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          529 LVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             GGGCTTCCEEECTTSGGGGSS
T ss_pred             HhcCCCCCEEEecCCcCCCCc
Confidence            344556666777777666655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.33  E-value=0.0042  Score=43.60  Aligned_cols=129  Identities=15%  Similarity=0.140  Sum_probs=75.2

Q ss_pred             CceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcccEE
Q 031657           10 LEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSL   89 (155)
Q Consensus        10 L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L   89 (155)
                      .+.+.+.+. .+..++....  ..+..+.+.++ .++..+......+++|++|++.+. ++..++...-  ..+++|+.|
T Consensus         9 ~~~l~~~~~-~l~~~p~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L   81 (177)
T 2o6r_A            9 GTEIRCNSK-GLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVF--DKLTKLTIL   81 (177)
T ss_dssp             TTEEECCSS-CCSSCCTTCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTT--TTCTTCCEE
T ss_pred             CCEEEecCC-CCccCCCCCC--CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhHc--cCCCccCEE
Confidence            345555543 3555554332  12333444433 233333333567899999999875 5666554321  268899999


Q ss_pred             eecCCccCcCCCcC-CCCCCCcCeEEEecCcchhhhhccCCCCCcCcccccCeeEecceeccC
Q 031657           90 SIFFCEKLKSLPDQ-LLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRYEQG  151 (155)
Q Consensus        90 ~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~i~~~~~~~~~  151 (155)
                      .+..+ +++.+|.. +.++++|+.|.++++. +....    ...+..+.++..+.+.+..+.+
T Consensus        82 ~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~----~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           82 YLHEN-KLQSLPNGVFDKLTQLKELALDTNQ-LKSVP----DGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             ECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCC----TTTTTTCTTCCEEECCSSCBCC
T ss_pred             ECCCC-CccccCHHHhhCCcccCEEECcCCc-ceEeC----HHHhcCCcccCEEEecCCCeec
Confidence            99887 68888765 4678999999998764 22111    1113345566666666554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.10  E-value=0.00049  Score=53.14  Aligned_cols=35  Identities=11%  Similarity=0.196  Sum_probs=19.2

Q ss_pred             CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c  118 (155)
                      +++|+.|.+..+ +++.+|..+..+++|+.|+++++
T Consensus       190 l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N  224 (317)
T 3o53_A          190 FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN  224 (317)
T ss_dssp             CTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS
T ss_pred             cccCCEEECCCC-cCCcchhhhcccCcccEEECcCC
Confidence            555555555554 45555554445556666665554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.09  E-value=5e-05  Score=55.00  Aligned_cols=88  Identities=6%  Similarity=0.089  Sum_probs=49.2

Q ss_pred             CCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCC----CCcceeeccCcccCcccccCCCccccC
Q 031657            9 SLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAF----PKLEKLDLGIMLQLEEWDFGKEDITIM   83 (155)
Q Consensus         9 ~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f----~~L~~L~l~~~~~L~~~~~~~~~~~~~   83 (155)
                      .|++|.+++|. +...+-... +...+..+.+.+|..++-..-..+..+    ++|++|++++|+++..--...  ...+
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~--L~~~  138 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA--LHHF  138 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH--GGGC
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH--HhcC
Confidence            57777777774 332211111 111223334444443322110012222    479999999999887532111  1268


Q ss_pred             CcccEEeecCCccCcC
Q 031657           84 PQVKSLSIFFCEKLKS   99 (155)
Q Consensus        84 p~L~~L~i~~C~~L~~   99 (155)
                      ++|+.|.+.+|++++.
T Consensus       139 ~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TTCCEEEEESCTTCCC
T ss_pred             CCCCEEECCCCCCCCc
Confidence            9999999999998874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.07  E-value=0.0095  Score=42.56  Aligned_cols=125  Identities=14%  Similarity=0.137  Sum_probs=72.2

Q ss_pred             ceeeecccccceeeCcccccCcccccccccCccccCCCCCC-cccCCCCcceeeccCcccCcccc-cCCCccccCCcccE
Q 031657           11 EILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSS-SVVAFPKLEKLDLGIMLQLEEWD-FGKEDITIMPQVKS   88 (155)
Q Consensus        11 ~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~L~~L~l~~~~~L~~~~-~~~~~~~~~p~L~~   88 (155)
                      +.+.+++. .+..+|..+..  .+..+.+.+. .+...+.. ....+++|++|++++. .+..+. ....   .+++|+.
T Consensus        11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~   82 (192)
T 1w8a_A           11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFE---GASHIQE   82 (192)
T ss_dssp             TEEECTTS-CCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTT---TCTTCCE
T ss_pred             CEEEcCCC-CcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcC---CcccCCE
Confidence            56666654 46666654432  2233333333 23333322 2567899999999875 455543 2222   6889999


Q ss_pred             EeecCCccCcCCCc-CCCCCCCcCeEEEecCcchhhhhccCCCCCcCcccccCeeEecceec
Q 031657           89 LSIFFCEKLKSLPD-QLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRYE  149 (155)
Q Consensus        89 L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~i~~~~~~~  149 (155)
                      |.+..+ +++.++. .+.++++|+.|.+++.. +....    ...+..+.++..+.+.+..+
T Consensus        83 L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~----~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           83 LQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQ-ISCVM----PGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             EECCSC-CCCEECSSSSTTCTTCCEEECCSSC-CCEEC----TTSSTTCTTCCEEECTTCCB
T ss_pred             EECCCC-cCCccCHHHhcCCCCCCEEECCCCc-CCeeC----HHHhhcCCCCCEEEeCCCCc
Confidence            999887 5777665 46679999999998764 11111    11233444555555554443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.04  E-value=0.0073  Score=51.42  Aligned_cols=12  Identities=25%  Similarity=0.390  Sum_probs=6.5

Q ss_pred             CCCCceeeeccc
Q 031657            7 LPSLEILRIEEM   18 (155)
Q Consensus         7 L~~L~~L~i~~~   18 (155)
                      +++|++|.++++
T Consensus        80 l~~L~~L~Ls~N   91 (622)
T 3g06_A           80 PPELRTLEVSGN   91 (622)
T ss_dssp             CTTCCEEEECSC
T ss_pred             CCCCCEEEcCCC
Confidence            455555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=96.99  E-value=0.0021  Score=54.75  Aligned_cols=56  Identities=20%  Similarity=0.331  Sum_probs=38.1

Q ss_pred             CCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           56 FPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        56 f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      +++|+.|.++++ ++..++.      .+++|+.|.+.+| +++.+|..+.++++|+.|.+++++
T Consensus       240 l~~L~~L~Ls~N-~L~~lp~------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          240 PSELKELMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             CCcCcEEECCCC-CCCcCCc------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence            455555555543 3444332      3677888888877 677888877778888888888876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.90  E-value=0.0038  Score=50.88  Aligned_cols=100  Identities=17%  Similarity=0.164  Sum_probs=54.3

Q ss_pred             CCCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccc
Q 031657            2 PPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDIT   81 (155)
Q Consensus         2 p~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~   81 (155)
                      |.++.+++|++|.+.++. +..++...   .....+.+.++ .++..+  ....+++|++|++++. .+..++.      
T Consensus       189 ~~~~~l~~L~~L~l~~N~-l~~l~~~~---~~L~~L~l~~n-~l~~lp--~~~~l~~L~~L~l~~N-~l~~l~~------  254 (454)
T 1jl5_A          189 PELQNLPFLTAIYADNNS-LKKLPDLP---LSLESIVAGNN-ILEELP--ELQNLPFLTTIYADNN-LLKTLPD------  254 (454)
T ss_dssp             CCCTTCTTCCEEECCSSC-CSSCCCCC---TTCCEEECCSS-CCSSCC--CCTTCTTCCEEECCSS-CCSSCCS------
T ss_pred             ccccCCCCCCEEECCCCc-CCcCCCCc---CcccEEECcCC-cCCccc--ccCCCCCCCEEECCCC-cCCcccc------
Confidence            445666677777666652 33333211   12223333333 222333  1456777777777663 3333331      


Q ss_pred             cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+.++ ++..+|..   +++|+.|+++++.
T Consensus       255 ~~~~L~~L~l~~N-~l~~l~~~---~~~L~~L~ls~N~  288 (454)
T 1jl5_A          255 LPPSLEALNVRDN-YLTDLPEL---PQSLTFLDVSENI  288 (454)
T ss_dssp             CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC
T ss_pred             cccccCEEECCCC-cccccCcc---cCcCCEEECcCCc
Confidence            3567888887776 46666654   4677777777653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.87  E-value=0.00097  Score=54.84  Aligned_cols=35  Identities=11%  Similarity=0.196  Sum_probs=18.3

Q ss_pred             CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c  118 (155)
                      +++|+.|.+.++ ++..+|..+..+++|+.|+++++
T Consensus       190 l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          190 FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN  224 (487)
T ss_dssp             CTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS
T ss_pred             CCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC
Confidence            455555555554 35555544444555555555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.86  E-value=1.1e-05  Score=58.43  Aligned_cols=106  Identities=16%  Similarity=0.148  Sum_probs=61.2

Q ss_pred             CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM   83 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~   83 (155)
                      ++.+++|++|.++++ .+..++ .+.....+..+++.++ .++..+. ....+++|+.|.+.++ .+..++.    ...+
T Consensus        44 ~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~-~~~~~~~L~~L~L~~N-~l~~l~~----~~~l  114 (198)
T 1ds9_A           44 LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIEN-LDAVADTLEELWISYN-QIASLSG----IEKL  114 (198)
T ss_dssp             HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSS-HHHHHHHCSEEEEEEE-ECCCHHH----HHHH
T ss_pred             HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-Ccccccc-hhhcCCcCCEEECcCC-cCCcCCc----cccC
Confidence            456778888888776 355554 2222222223333332 1222221 1234567777777664 4444441    1257


Q ss_pred             CcccEEeecCCccCcCCCc--CCCCCCCcCeEEEecCc
Q 031657           84 PQVKSLSIFFCEKLKSLPD--QLLRSTTLESLEIADVP  119 (155)
Q Consensus        84 p~L~~L~i~~C~~L~~lp~--~~~~l~~L~~L~i~~c~  119 (155)
                      ++|+.|.+.++ ++..++.  .+..+++|+.|.+++++
T Consensus       115 ~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          115 VNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             CCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence            88888888876 4666554  45668899999998875

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=96.75  E-value=0.0017  Score=49.81  Aligned_cols=36  Identities=22%  Similarity=0.182  Sum_probs=18.6

Q ss_pred             CCcccEEeecCCccCcCC-CcCCCCC---CCcCeEEEecCc
Q 031657           83 MPQVKSLSIFFCEKLKSL-PDQLLRS---TTLESLEIADVP  119 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~l-p~~~~~l---~~L~~L~i~~c~  119 (155)
                      +++|+.|.+..+ ++..+ |..+..+   ++|++|.++++.
T Consensus       223 l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~  262 (310)
T 4glp_A          223 GVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAG  262 (310)
T ss_dssp             TCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred             CCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCC
Confidence            456666666554 34433 4443333   466666665543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.62  E-value=0.0024  Score=55.17  Aligned_cols=87  Identities=10%  Similarity=-0.046  Sum_probs=62.5

Q ss_pred             CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM   83 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~   83 (155)
                      +..|++|++|.|+++ .+..++..+.....+..+.+.++. ++.++. ++..+++|++|.+.+. .+..++...+   .+
T Consensus       243 ~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~-~~~~l~~L~~L~L~~N-~l~~lp~~~~---~l  315 (727)
T 4b8c_D          243 IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPA-ELGSCFQLKYFYFFDN-MVTTLPWEFG---NL  315 (727)
T ss_dssp             GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCS-SGGGGTTCSEEECCSS-CCCCCCSSTT---SC
T ss_pred             hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccCh-hhcCCCCCCEEECCCC-CCCccChhhh---cC
Confidence            557899999999987 566787766554444555555543 334443 2678899999999886 5777776655   79


Q ss_pred             CcccEEeecCCccCc
Q 031657           84 PQVKSLSIFFCEKLK   98 (155)
Q Consensus        84 p~L~~L~i~~C~~L~   98 (155)
                      ++|+.|.+..++ +.
T Consensus       316 ~~L~~L~L~~N~-l~  329 (727)
T 4b8c_D          316 CNLQFLGVEGNP-LE  329 (727)
T ss_dssp             TTCCCEECTTSC-CC
T ss_pred             CCccEEeCCCCc-cC
Confidence            999999998874 44

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=96.61  E-value=0.0042  Score=47.69  Aligned_cols=108  Identities=14%  Similarity=0.154  Sum_probs=55.8

Q ss_pred             CCCCCceeeecccccceeeCccc--ccCcccccccccCccccCCCCCCcccCC-----CCcceeeccCcccCcccc-cCC
Q 031657            6 KLPSLEILRIEEMVSVKMVGDEF--LGIGICDHNHIHGTFSSSSSSSSSVVAF-----PKLEKLDLGIMLQLEEWD-FGK   77 (155)
Q Consensus         6 ~L~~L~~L~i~~~~~l~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f-----~~L~~L~l~~~~~L~~~~-~~~   77 (155)
                      .+++|++|.++++.--..++..+  .....+..+++.++. ++..+ .....+     ++|++|++++.. +..++ ...
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~  169 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRD-AWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQV  169 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSS-SHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-Ccchh-HHHHHHHHhhcCCCcEEEeeCCC-CccchHHHh
Confidence            57899999998874222344433  122222333333321 11111 112222     677777776643 33333 222


Q ss_pred             CccccCCcccEEeecCCccCcC--CCcCC--CCCCCcCeEEEecCc
Q 031657           78 EDITIMPQVKSLSIFFCEKLKS--LPDQL--LRSTTLESLEIADVP  119 (155)
Q Consensus        78 ~~~~~~p~L~~L~i~~C~~L~~--lp~~~--~~l~~L~~L~i~~c~  119 (155)
                      .   .+++|+.|.+.++.-...  ++..+  .++++|++|.++++.
T Consensus       170 ~---~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~  212 (312)
T 1wwl_A          170 R---VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG  212 (312)
T ss_dssp             C---CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred             c---cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence            2   577888888877642222  23222  457788888887765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.59  E-value=0.0066  Score=51.22  Aligned_cols=32  Identities=13%  Similarity=0.219  Sum_probs=26.4

Q ss_pred             cEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           87 KSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        87 ~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      +.|.+.++ +++.+|..+.++++|+.|.+++++
T Consensus       210 ~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          210 IFFRCREN-RITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             EEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             eEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence            88888876 688888877778889999988876

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.51  E-value=0.015  Score=49.03  Aligned_cols=32  Identities=28%  Similarity=0.404  Sum_probs=16.8

Q ss_pred             CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c  118 (155)
                      +++|+.|.+.++ ++..+|. +.  ++|+.|.++++
T Consensus       159 l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~N  190 (571)
T 3cvr_A          159 PTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVSTN  190 (571)
T ss_dssp             CTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSS
T ss_pred             CCCcCEEECCCC-CCCCcch-hh--CCCCEEECcCC
Confidence            455556655554 3555555 22  55555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.51  E-value=0.0021  Score=53.09  Aligned_cols=39  Identities=18%  Similarity=0.152  Sum_probs=28.9

Q ss_pred             cCCcccEEeecCCccCcC-CCcCCCCCCCcCeEEEecCcc
Q 031657           82 IMPQVKSLSIFFCEKLKS-LPDQLLRSTTLESLEIADVPI  120 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~-lp~~~~~l~~L~~L~i~~c~~  120 (155)
                      .+++|+.|.+.+|+.-.. +.....++++|+.|++++|+.
T Consensus       479 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            489999999999975221 222334578999999999984

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.31  E-value=0.00065  Score=56.22  Aligned_cols=109  Identities=15%  Similarity=0.155  Sum_probs=56.4

Q ss_pred             CCCCCceeeeccccccee--eCcccccCcccccccccCccccCCCCCC----cccCCCCcceeeccCcc-cCc--ccccC
Q 031657            6 KLPSLEILRIEEMVSVKM--VGDEFLGIGICDHNHIHGTFSSSSSSSS----SVVAFPKLEKLDLGIML-QLE--EWDFG   76 (155)
Q Consensus         6 ~L~~L~~L~i~~~~~l~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~f~~L~~L~l~~~~-~L~--~~~~~   76 (155)
                      .+++|++|.+.+|..+..  ++.-......+..+.+.+|. ++.....    -...+++|++|.+.++. .+.  .+..-
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l  206 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL  206 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence            478899999988864433  11100011122233344332 1110000    01246678888777664 111  11100


Q ss_pred             CCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657           77 KEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        77 ~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c  118 (155)
                         ...+++|+.|.+..|..+..++..+.++++|++|.+..|
T Consensus       207 ---~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          207 ---VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             ---HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred             ---HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence               014688888888888666666655556777777765544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.15  E-value=0.052  Score=38.16  Aligned_cols=86  Identities=14%  Similarity=0.130  Sum_probs=56.8

Q ss_pred             CCCcceeeccCcccCccccc-CCCccccCCcccEEeecCCccCcCCCcCC-CCCCCcCeEEEecCcchhhhhccCCCCCc
Q 031657           56 FPKLEKLDLGIMLQLEEWDF-GKEDITIMPQVKSLSIFFCEKLKSLPDQL-LRSTTLESLEIADVPIVEENFKKDTGKDW  133 (155)
Q Consensus        56 f~~L~~L~l~~~~~L~~~~~-~~~~~~~~p~L~~L~i~~C~~L~~lp~~~-~~l~~L~~L~i~~c~~l~~~~~~~~~~~w  133 (155)
                      +++|+.|++++. +++.++. ...   .+++|+.|.+... +++.+|... .++++|+.|.+++.. +....    ...+
T Consensus        32 ~~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~----~~~~  101 (174)
T 2r9u_A           32 PTDKQRLWLNNN-QITKLEPGVFD---HLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH-LKSIP----RGAF  101 (174)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCC----TTTT
T ss_pred             CCCCcEEEeCCC-CccccCHHHhc---CCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc-cceeC----HHHh
Confidence            478999999874 3555532 222   6899999999987 799998864 679999999998753 22111    1113


Q ss_pred             CcccccCeeEecceeccC
Q 031657          134 SKISHIPNILISRRYEQG  151 (155)
Q Consensus       134 ~~i~~i~~i~~~~~~~~~  151 (155)
                      ..+..+..+.+.+..+..
T Consensus       102 ~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A          102 DNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             TTCTTCSEEECCSSCBCT
T ss_pred             ccccCCCEEEeCCCCccc
Confidence            344555555555554443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=95.95  E-value=0.074  Score=37.09  Aligned_cols=86  Identities=16%  Similarity=0.137  Sum_probs=57.2

Q ss_pred             CCCcceeeccCcccCcccccC-CCccccCCcccEEeecCCccCcCCCcCC-CCCCCcCeEEEecCcchhhhhccCCCCCc
Q 031657           56 FPKLEKLDLGIMLQLEEWDFG-KEDITIMPQVKSLSIFFCEKLKSLPDQL-LRSTTLESLEIADVPIVEENFKKDTGKDW  133 (155)
Q Consensus        56 f~~L~~L~l~~~~~L~~~~~~-~~~~~~~p~L~~L~i~~C~~L~~lp~~~-~~l~~L~~L~i~~c~~l~~~~~~~~~~~w  133 (155)
                      +++|++|.+++. +++.++.. ..   .+++|+.|.+... +++.+|... .++++|+.|.+++.. +....    ...+
T Consensus        29 ~~~l~~L~L~~N-~i~~~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~----~~~~   98 (170)
T 3g39_A           29 PTTTQVLYLYDN-QITKLEPGVFD---RLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIP----RGAF   98 (170)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTT---TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCC----TTTT
T ss_pred             CCCCcEEEcCCC-cCCccChhhhc---CcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCc-cCEeC----HHHh
Confidence            578999999774 45555322 22   6899999999987 699988864 679999999998754 22111    1123


Q ss_pred             CcccccCeeEecceeccC
Q 031657          134 SKISHIPNILISRRYEQG  151 (155)
Q Consensus       134 ~~i~~i~~i~~~~~~~~~  151 (155)
                      ..+..+..+.+.+..+..
T Consensus        99 ~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           99 DNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             TTCTTCCEEECCSSCBCT
T ss_pred             cCCCCCCEEEeCCCCCCC
Confidence            445556666665554443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=95.91  E-value=0.068  Score=38.13  Aligned_cols=124  Identities=12%  Similarity=0.200  Sum_probs=69.6

Q ss_pred             ceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcccEEe
Q 031657           11 EILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLS   90 (155)
Q Consensus        11 ~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~   90 (155)
                      +.+.+++. .+..+|.++..  .+..+.+.+. .++..+ .....+++|+.|++++. .+..++...  ...+++|+.|.
T Consensus        13 ~~l~~~~~-~l~~ip~~~~~--~l~~L~L~~n-~i~~ip-~~~~~l~~L~~L~Ls~N-~i~~i~~~~--f~~l~~L~~L~   84 (193)
T 2wfh_A           13 TVVRCSNK-GLKVLPKGIPR--DVTELYLDGN-QFTLVP-KELSNYKHLTLIDLSNN-RISTLSNQS--FSNMTQLLTLI   84 (193)
T ss_dssp             TEEECTTS-CCSSCCSCCCT--TCCEEECCSS-CCCSCC-GGGGGCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEE
T ss_pred             CEEEcCCC-CCCcCCCCCCC--CCCEEECCCC-cCchhH-HHhhcccCCCEEECCCC-cCCEeCHhH--ccCCCCCCEEE
Confidence            44555543 46666654321  2233333322 223333 23667888888888764 355544321  12688999999


Q ss_pred             ecCCccCcCCCc-CCCCCCCcCeEEEecCcchhhhhccCCCCCcCcccccCeeEeccee
Q 031657           91 IFFCEKLKSLPD-QLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRY  148 (155)
Q Consensus        91 i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~i~~~~~~  148 (155)
                      +.++ +++.++. .+..+++|+.|.+++.. +...    ....+..+..+..+.+.+..
T Consensus        85 Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~----~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           85 LSYN-RLRCIPPRTFDGLKSLRLLSLHGND-ISVV----PEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCSS-CCCBCCTTTTTTCTTCCEEECCSSC-CCBC----CTTTTTTCTTCCEEECCSSC
T ss_pred             CCCC-ccCEeCHHHhCCCCCCCEEECCCCC-CCee----ChhhhhcCccccEEEeCCCC
Confidence            9886 5777765 46678999999988754 2111    11123345556666665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=95.89  E-value=0.019  Score=43.81  Aligned_cols=61  Identities=15%  Similarity=0.112  Sum_probs=36.8

Q ss_pred             CCCCcceeeccCcccCcccc-cCCCccccCCcccEEeecCCccCc--CCC--cCCCCCCCcCeEEEecCc
Q 031657           55 AFPKLEKLDLGIMLQLEEWD-FGKEDITIMPQVKSLSIFFCEKLK--SLP--DQLLRSTTLESLEIADVP  119 (155)
Q Consensus        55 ~f~~L~~L~l~~~~~L~~~~-~~~~~~~~~p~L~~L~i~~C~~L~--~lp--~~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|++|.+.++. +..++ ....   .+++|+.|.+..+.-..  .++  ....++++|++|.+++|.
T Consensus       143 ~~~~L~~L~Ls~n~-l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~  208 (310)
T 4glp_A          143 LKPGLKVLSIAQAH-SPAFSCEQVR---AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG  208 (310)
T ss_dssp             BCSCCCEEEEECCS-SCCCCTTSCC---CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred             hccCCCEEEeeCCC-cchhhHHHhc---cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence            47777777776654 23332 2222   57888888888774221  122  223457888888888775

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=95.48  E-value=0.00057  Score=54.02  Aligned_cols=15  Identities=13%  Similarity=-0.011  Sum_probs=10.6

Q ss_pred             CCCCCCCceeeeccc
Q 031657            4 LGKLPSLEILRIEEM   18 (155)
Q Consensus         4 l~~L~~L~~L~i~~~   18 (155)
                      +.++++|++|.++++
T Consensus        28 l~~~~~L~~L~L~~n   42 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGN   42 (386)
T ss_dssp             HHHCSCCCEEECTTS
T ss_pred             HhcCCCccEEECCCC
Confidence            345677888888776

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.33  E-value=0.028  Score=43.44  Aligned_cols=63  Identities=13%  Similarity=0.161  Sum_probs=50.4

Q ss_pred             ccCCCCcceeeccCcccCcccccC-CCccccCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFG-KEDITIMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP  119 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~-~~~~~~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~  119 (155)
                      +..+++|+.|+|++...+..++.. ..   .+++|+.|.+... +|..++.. +.++++|+.|++++..
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~---~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLR---GLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSC---SCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhc---cccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc
Confidence            556788999999877788887743 22   6999999999997 68887764 5679999999998743

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.29  E-value=0.0024  Score=50.86  Aligned_cols=62  Identities=19%  Similarity=0.200  Sum_probs=41.2

Q ss_pred             cCCCCcceeeccCcccCccc---ccCCCccccCCcccEEeecCCccCcC-----CCcCCCCCCCcCeEEEecCc
Q 031657           54 VAFPKLEKLDLGIMLQLEEW---DFGKEDITIMPQVKSLSIFFCEKLKS-----LPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        54 ~~f~~L~~L~l~~~~~L~~~---~~~~~~~~~~p~L~~L~i~~C~~L~~-----lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ..||+|+.|.+.+|.--...   .....   .+|.|+.|.+..+ .+..     ++.++.++++|+.|+++.|.
T Consensus       249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~---~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQNVVVEMFLESD---ILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             TTCTTCCEEEEESCTTHHHHHHHHHHCS---SGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCCCcCEEeCCCCCCchHHHHHHHhCc---cCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            35899999988775432111   11112   5889999999654 4543     45555568899999998876

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.04  E-value=0.0031  Score=52.20  Aligned_cols=60  Identities=13%  Similarity=0.108  Sum_probs=39.3

Q ss_pred             CCCCcceeeccCcccCcc--cccCCCccccCCcccEEeecCCccCcC--CCcCCCCCCCcCeEEEecCc
Q 031657           55 AFPKLEKLDLGIMLQLEE--WDFGKEDITIMPQVKSLSIFFCEKLKS--LPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        55 ~f~~L~~L~l~~~~~L~~--~~~~~~~~~~~p~L~~L~i~~C~~L~~--lp~~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+.++. +..  +....   ..+++|+.|.+.+|+ +..  ++....++++|+.|++++|.
T Consensus       461 ~~~~L~~L~L~~n~-l~~~~~~~~~---~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          461 YSPNVRWMLLGYVG-ESDEGLMEFS---RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             SCTTCCEEEECSCC-SSHHHHHHHH---TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             hCccceEeeccCCC-CCHHHHHHHH---hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            36777777776654 321  11111   157889999999997 542  44444457899999999987

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=94.76  E-value=0.0019  Score=50.99  Aligned_cols=36  Identities=17%  Similarity=0.193  Sum_probs=22.7

Q ss_pred             CCcccEEeecCCccCcC-----CCcCC-CCCCCcCeEEEecCc
Q 031657           83 MPQVKSLSIFFCEKLKS-----LPDQL-LRSTTLESLEIADVP  119 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~-----lp~~~-~~l~~L~~L~i~~c~  119 (155)
                      +++|+.|.+..|. +..     +|..+ .++++|+.|.+++++
T Consensus       273 ~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          273 NIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             SCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            6677777777663 444     55554 346777777776654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=94.62  E-value=0.077  Score=42.10  Aligned_cols=14  Identities=36%  Similarity=0.382  Sum_probs=9.5

Q ss_pred             CCCCcCeEEEecCc
Q 031657          106 RSTTLESLEIADVP  119 (155)
Q Consensus       106 ~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+.+|.
T Consensus       250 ~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          250 RFPNLKWLGIVDAE  263 (362)
T ss_dssp             TCTTCCEEEEESCT
T ss_pred             CCCCcCEEeCCCCC
Confidence            36777777777665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=94.51  E-value=0.23  Score=38.09  Aligned_cols=56  Identities=11%  Similarity=0.029  Sum_probs=31.0

Q ss_pred             CCCCcceeeccCcccCcccccCCCccccCCccc-EEeecCCccCcCCCc-CCCCCCCcCeEEEe
Q 031657           55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVK-SLSIFFCEKLKSLPD-QLLRSTTLESLEIA  116 (155)
Q Consensus        55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~-~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~  116 (155)
                      .+++|+++.+.+  +++.+....-  ..+++|+ .+.+..  +++.++. ....+++|+.+.+.
T Consensus       248 ~~~~L~~l~l~~--ni~~I~~~aF--~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~  305 (329)
T 3sb4_A          248 QKKYLLKIKLPH--NLKTIGQRVF--SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLAT  305 (329)
T ss_dssp             TCTTCCEEECCT--TCCEECTTTT--TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEEC
T ss_pred             CCCCCCEEECCc--ccceehHHHh--hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeC
Confidence            456677776654  3555543321  1355566 666655  5666553 34456667776654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=94.34  E-value=0.0061  Score=50.37  Aligned_cols=16  Identities=19%  Similarity=0.216  Sum_probs=8.6

Q ss_pred             CCCCCCCcCeEEEecC
Q 031657          103 QLLRSTTLESLEIADV  118 (155)
Q Consensus       103 ~~~~l~~L~~L~i~~c  118 (155)
                      .+..+++|+.|.++++
T Consensus       265 ~l~~~~~L~~L~l~~~  280 (592)
T 3ogk_B          265 NLVFPRKLCRLGLSYM  280 (592)
T ss_dssp             CCCCCTTCCEEEETTC
T ss_pred             HhhccccccccCcccc
Confidence            3444556666666543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=94.01  E-value=0.013  Score=46.80  Aligned_cols=15  Identities=33%  Similarity=0.607  Sum_probs=8.1

Q ss_pred             CCCCCCCceeeeccc
Q 031657            4 LGKLPSLEILRIEEM   18 (155)
Q Consensus         4 l~~L~~L~~L~i~~~   18 (155)
                      ++.+++|++|.++++
T Consensus       109 l~~~~~L~~L~Ls~n  123 (461)
T 1z7x_W          109 LRTLPTLQELHLSDN  123 (461)
T ss_dssp             TTSCTTCCEEECCSS
T ss_pred             HccCCceeEEECCCC
Confidence            345555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=93.17  E-value=0.018  Score=45.06  Aligned_cols=58  Identities=17%  Similarity=0.049  Sum_probs=36.9

Q ss_pred             CCcceeeccCcccCcc-----cccCCCcccc-CCcccEEeecCCccCcCCC-----cCCCCCCCcCeEEEecCc
Q 031657           57 PKLEKLDLGIMLQLEE-----WDFGKEDITI-MPQVKSLSIFFCEKLKSLP-----DQLLRSTTLESLEIADVP  119 (155)
Q Consensus        57 ~~L~~L~l~~~~~L~~-----~~~~~~~~~~-~p~L~~L~i~~C~~L~~lp-----~~~~~l~~L~~L~i~~c~  119 (155)
                      ++|++|+++++. +..     ++...   .. .++|+.|.+..+ .+...+     .....+++|+.|.+++|.
T Consensus       196 ~~L~~L~Ls~N~-i~~~~~~~l~~~l---~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          196 ASVTSLDLSANL-LGLKSYAELAYIF---SSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             TTCCEEECTTSC-GGGSCHHHHHHHH---HHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CCCCEEECCCCC-CChhHHHHHHHHH---hcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            488888887754 332     11111   12 358999999887 465543     234557889999998876

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=93.09  E-value=0.0078  Score=48.13  Aligned_cols=63  Identities=19%  Similarity=0.168  Sum_probs=41.5

Q ss_pred             CCCCcceeeccCcccCcccccC-CCc--cccCCcccEEeecCCccCc-----CCCcCCCCCCCcCeEEEecCc
Q 031657           55 AFPKLEKLDLGIMLQLEEWDFG-KED--ITIMPQVKSLSIFFCEKLK-----SLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        55 ~f~~L~~L~l~~~~~L~~~~~~-~~~--~~~~p~L~~L~i~~C~~L~-----~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|++|+++++ .+...... ..+  ....++|+.|.+.+| ++.     .+|..+.++++|++|++++++
T Consensus       339 ~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          339 QNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             hCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            4578888888776 33322110 000  002678999999998 465     567766678999999999886

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=92.39  E-value=0.65  Score=35.50  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=18.8

Q ss_pred             CCcccEEeecCCccCcCCCcC-CCCCCCcC-eEEEec
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQ-LLRSTTLE-SLEIAD  117 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~-~L~i~~  117 (155)
                      +++|+.+.+..  +++.++.+ ...+.+|+ .+.+.+
T Consensus       249 ~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          249 KKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             CTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT
T ss_pred             CCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc
Confidence            45566666544  25555543 34566676 776654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=92.02  E-value=0.0095  Score=42.61  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=15.8

Q ss_pred             CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c  118 (155)
                      +++|+.|.+..+ ++..+| .+.++++|+.|+++++
T Consensus        92 ~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N  125 (198)
T 1ds9_A           92 ADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNN  125 (198)
T ss_dssp             HHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEESEE
T ss_pred             CCcCCEEECcCC-cCCcCC-ccccCCCCCEEECCCC
Confidence            345555555544 344443 2233455555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=91.36  E-value=0.038  Score=43.17  Aligned_cols=61  Identities=11%  Similarity=0.144  Sum_probs=35.2

Q ss_pred             CCcceeeccCcccCcccccC-CCc-cccC-CcccEEeecCCccCcCCCc-----CCCC-CCCcCeEEEecCc
Q 031657           57 PKLEKLDLGIMLQLEEWDFG-KED-ITIM-PQVKSLSIFFCEKLKSLPD-----QLLR-STTLESLEIADVP  119 (155)
Q Consensus        57 ~~L~~L~l~~~~~L~~~~~~-~~~-~~~~-p~L~~L~i~~C~~L~~lp~-----~~~~-l~~L~~L~i~~c~  119 (155)
                      ++|++|+++++. +...... ... ...+ ++|+.|.+..|. +...+.     .+.. ..+|++|.+++|.
T Consensus        80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A           80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred             CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence            778888877754 3221110 000 1123 788888888874 655443     1223 2588999988875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=90.76  E-value=1.4  Score=35.05  Aligned_cols=22  Identities=5%  Similarity=-0.010  Sum_probs=10.6

Q ss_pred             CCCCCCCceeeecccccceeeCc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGD   26 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~   26 (155)
                      +..+++|+.+.+.+. ++..++.
T Consensus       176 F~~c~~L~~l~l~~n-~l~~I~~  197 (401)
T 4fdw_A          176 FYYCYNLKKADLSKT-KITKLPA  197 (401)
T ss_dssp             TTTCTTCCEEECTTS-CCSEECT
T ss_pred             hhCcccCCeeecCCC-cceEech
Confidence            344555555555432 3444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=88.91  E-value=4  Score=32.40  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=10.3

Q ss_pred             CCCCCCCceeeecccccceeeCcc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDE   27 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~   27 (155)
                      +..+++|+.+.+.+  ++..++..
T Consensus       222 F~~~~~L~~l~l~~--~l~~I~~~  243 (401)
T 4fdw_A          222 FLKTSQLKTIEIPE--NVSTIGQE  243 (401)
T ss_dssp             TTTCTTCCCEECCT--TCCEECTT
T ss_pred             hhCCCCCCEEecCC--CccCcccc
Confidence            33445555555543  34444433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=85.96  E-value=0.43  Score=36.28  Aligned_cols=62  Identities=26%  Similarity=0.221  Sum_probs=39.6

Q ss_pred             CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCC--CcCeEEEecCc
Q 031657           55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRST--TLESLEIADVP  119 (155)
Q Consensus        55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~--~L~~L~i~~c~  119 (155)
                      .|++|++|.+++. ++..+..-......+++|+.|.+... +++.+.. +..+.  +|++|.+.+.+
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~-l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE-LDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG-GGGGTTSCCSEEECTTST
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchh-hhhcccCCcceEEccCCc
Confidence            5889999998763 33333211111126999999999774 5666532 22233  89999998877

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=82.31  E-value=0.72  Score=35.02  Aligned_cols=56  Identities=18%  Similarity=0.082  Sum_probs=32.3

Q ss_pred             cCCCCcceeeccCcccCcccccCCCccccCC--cccEEeecCCccCcCCCc-------CCCCCCCcCeEE
Q 031657           54 VAFPKLEKLDLGIMLQLEEWDFGKEDITIMP--QVKSLSIFFCEKLKSLPD-------QLLRSTTLESLE  114 (155)
Q Consensus        54 ~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p--~L~~L~i~~C~~L~~lp~-------~~~~l~~L~~L~  114 (155)
                      ..+++|+.|.+++ .++..+.. ..   .+.  .|+.|.+.+.|--..+|.       .+..+++|+.|+
T Consensus       193 ~~l~~L~~L~Ls~-N~i~~~~~-l~---~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          193 QKAPNLKILNLSG-NELKSERE-LD---KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHSTTCCEEECTT-SCCCSGGG-GG---GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hhCCCCCEEECCC-CccCCchh-hh---hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            3689999999966 23433311 11   233  899999988763233431       123466666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=82.10  E-value=0.11  Score=36.88  Aligned_cols=55  Identities=18%  Similarity=0.121  Sum_probs=28.3

Q ss_pred             CCCcceeeccCcccCcc-----cccCCCccccCCcccEEeecCCccCcC-----CCcCCCCCCCcCeEEE
Q 031657           56 FPKLEKLDLGIMLQLEE-----WDFGKEDITIMPQVKSLSIFFCEKLKS-----LPDQLLRSTTLESLEI  115 (155)
Q Consensus        56 f~~L~~L~l~~~~~L~~-----~~~~~~~~~~~p~L~~L~i~~C~~L~~-----lp~~~~~l~~L~~L~i  115 (155)
                      .++|++|+++++. +..     +...   ....++|+.|.+..|. +..     +...+...++|++|++
T Consensus        64 ~~~L~~L~Ls~n~-i~~~g~~~l~~~---L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A           64 NTYVKKFSIVGTR-SNDPVAFALAEM---LKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRI  128 (185)
T ss_dssp             CCSCCEEECTTSC-CCHHHHHHHHHH---HHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             CCCcCEEECcCCC-CChHHHHHHHHH---HHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEe
Confidence            4667777776643 211     1100   1134567777776663 322     3344444566777777

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=81.12  E-value=0.092  Score=41.61  Aligned_cols=60  Identities=15%  Similarity=0.079  Sum_probs=31.1

Q ss_pred             CCCCcceeeccCcccCcc-----cccCCCccccCCcccEEeecCCccCcC-----CCcCCCCCCCcCeEEEecCc
Q 031657           55 AFPKLEKLDLGIMLQLEE-----WDFGKEDITIMPQVKSLSIFFCEKLKS-----LPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        55 ~f~~L~~L~l~~~~~L~~-----~~~~~~~~~~~p~L~~L~i~~C~~L~~-----lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ..++|++|+++++. +..     +...   ....++|+.|.+.+|. +..     +...+...++|++|++++++
T Consensus       181 ~~~~L~~L~Ls~N~-l~~~g~~~L~~~---L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          181 GNTSVTHLSLLHTG-LGDEGLELLAAQ---LDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             TCSSCCEEECTTSS-CHHHHHHHHHHH---GGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             cCCCcCEEeCCCCC-CCcHHHHHHHHH---HhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            45667777776643 221     1111   1135567777777763 332     22233335667777777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.03
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.94
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.94
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.92
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.91
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.9
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.86
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.78
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.77
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.68
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.62
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.56
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.53
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.49
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.48
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.45
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.38
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.36
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.34
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.28
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.23
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.06
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.0
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.53
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.48
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	95.94
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	95.93
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.6
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	86.54
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	85.57

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=3.3e-05  Score=56.64  Aligned_cols=61  Identities=20%  Similarity=0.314  Sum_probs=41.4

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ...+++|++|.+++. +++.++...    .+++|+.|.+..+ +++..+....++++|+.|+++++.
T Consensus        51 f~~l~~L~~L~L~~N-~l~~l~~~~----~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~~~~  111 (266)
T d1p9ag_          51 LMPYTRLTQLNLDRA-ELTKLQVDG----TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR  111 (266)
T ss_dssp             GTTCTTCCEEECTTS-CCCEEECCS----CCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSC
T ss_pred             hhccccccccccccc-ccccccccc----ccccccccccccc-cccccccccccccccccccccccc
Confidence            446777777777765 566665432    5777777777776 566666666667777777777654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.94  E-value=2e-05  Score=56.08  Aligned_cols=111  Identities=17%  Similarity=0.182  Sum_probs=62.6

Q ss_pred             CCCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcc-----------cC
Q 031657            2 PPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIML-----------QL   70 (155)
Q Consensus         2 p~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~-----------~L   70 (155)
                      +.++.+++|++|+++++ .+..++. +.....+..+.+.++ .++..+  ....+++|+.|.+.++.           .+
T Consensus        62 ~~l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l  136 (210)
T d1h6ta2          62 QGIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLS--SLKDLKKLKSLSLEHNGISDINGLVHLPQL  136 (210)
T ss_dssp             TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGG--GGTTCTTCCEEECTTSCCCCCGGGGGCTTC
T ss_pred             hhHhhCCCCCEEeCCCc-cccCccc-cccCccccccccccc-cccccc--cccccccccccccccccccccccccccccc
Confidence            34677888999988877 3555532 211122223333332 222222  14456777777665532           22


Q ss_pred             cccccCCC------ccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           71 EEWDFGKE------DITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        71 ~~~~~~~~------~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      +.+.....      ....+++|+.+.+..+ ++..++. +.++++|++|.++++.
T Consensus       137 ~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n-~l~~i~~-l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         137 ESLYLGNNKITDITVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccccccccccccc-ccccccc-ccCCCCCCEEECCCCC
Confidence            22211110      0225788888888887 5777764 5568999999998774

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=3.8e-05  Score=52.41  Aligned_cols=86  Identities=19%  Similarity=0.190  Sum_probs=65.2

Q ss_pred             CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM   83 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~   83 (155)
                      +..+++|++|+|.+...++.++.+.                        +.++++|+.|.+++. +++.++...  ...+
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~------------------------f~~l~~L~~L~Ls~N-~l~~i~~~~--f~~l   79 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRD------------------------LRGLGELRNLTIVKS-GLRFVAPDA--FHFT   79 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGG------------------------SCSCCCCSEEECCSS-CCCEECTTG--GGSC
T ss_pred             ccCccccCeeecCCCccccccCchh------------------------hccccccCcceeecc-ccCCccccc--cccc
Confidence            5667788888887776677776432                        346899999999875 577775432  1268


Q ss_pred             CcccEEeecCCccCcCCCcCCCCCCCcCeEEEec
Q 031657           84 PQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIAD  117 (155)
Q Consensus        84 p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~  117 (155)
                      ++|+.|.+... +++.+|.++....+|+.|++++
T Consensus        80 ~~L~~L~Ls~N-~l~~l~~~~~~~~~l~~L~L~~  112 (156)
T d2ifga3          80 PRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSG  112 (156)
T ss_dssp             SCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCS
T ss_pred             ccccceeccCC-CCcccChhhhccccccccccCC
Confidence            89999999886 6999998876667899999985

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=6.3e-06  Score=56.85  Aligned_cols=108  Identities=14%  Similarity=0.097  Sum_probs=69.7

Q ss_pred             CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM   83 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~   83 (155)
                      +.+...|++|.+.++ .+..++..+.....+..+.+++. .+++.+  ....+++|++|.+.++. ++.++....  ..+
T Consensus        14 ~~n~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~--~~~~l~~L~~L~ls~N~-i~~l~~~~~--~~l   86 (162)
T d1a9na_          14 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKLD--GFPLLRRLKTLLVNNNR-ICRIGEGLD--QAL   86 (162)
T ss_dssp             EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEEC--CCCCCSSCCEEECCSSC-CCEECSCHH--HHC
T ss_pred             ccCcCcCcEEECCCC-CCCccCccccccccCCEEECCCC-CCCccC--CcccCcchhhhhccccc-ccCCCcccc--ccc
Confidence            456778899999876 46666432222223333444443 233222  14578889999998864 666654321  258


Q ss_pred             CcccEEeecCCccCcCCCc--CCCCCCCcCeEEEecCc
Q 031657           84 PQVKSLSIFFCEKLKSLPD--QLLRSTTLESLEIADVP  119 (155)
Q Consensus        84 p~L~~L~i~~C~~L~~lp~--~~~~l~~L~~L~i~~c~  119 (155)
                      ++|+.|.+.++ ++..++.  .+..+++|++|.+++++
T Consensus        87 ~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          87 PDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             TTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             cccccceeccc-cccccccccccccccccchhhcCCCc
Confidence            99999999887 5766654  45568999999999887

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=5.5e-05  Score=55.43  Aligned_cols=61  Identities=25%  Similarity=0.251  Sum_probs=46.6

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEec
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIAD  117 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~  117 (155)
                      ...+++|+.|.+.+. ++..++.+.-  ..+++|+.|.+.++ +++.+|.++..+++|+.|.+++
T Consensus       144 ~~~l~~l~~l~l~~N-~l~~~~~~~~--~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         144 LTPTPKLEKLSLANN-NLTELPAGLL--NGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             TTTCTTCCEEECTTS-CCSCCCTTTT--TTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCS
T ss_pred             ccccccchhcccccc-cccccCcccc--ccccccceeecccC-CCcccChhHCCCCCCCEEEecC
Confidence            445677777877664 5555554321  26899999999987 5999999988899999999975

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.91  E-value=1e-05  Score=53.29  Aligned_cols=86  Identities=19%  Similarity=0.180  Sum_probs=60.3

Q ss_pred             CCCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccc
Q 031657            2 PPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDIT   81 (155)
Q Consensus         2 p~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~   81 (155)
                      |.+++|++|++|++++. .++.++++                         ...+++|+.|.+++ -.++.++. ..   
T Consensus        14 ~~l~~l~~L~~L~ls~N-~l~~lp~~-------------------------~~~l~~L~~L~l~~-N~i~~l~~-~~---   62 (124)
T d1dcea3          14 CHLEQLLLVTHLDLSHN-RLRALPPA-------------------------LAALRCLEVLQASD-NALENVDG-VA---   62 (124)
T ss_dssp             CCGGGGTTCCEEECCSS-CCCCCCGG-------------------------GGGCTTCCEEECCS-SCCCCCGG-GT---
T ss_pred             cccccCCCCCEEECCCC-ccCcchhh-------------------------hhhhhccccccccc-ccccccCc-cc---
Confidence            45778888888888865 46666432                         33688899998877 35665542 22   


Q ss_pred             cCCcccEEeecCCccCcCCCc--CCCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKSLPD--QLLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~--~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+... ++..++.  .+..+++|+.|++++-+
T Consensus        63 ~l~~L~~L~l~~N-~i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          63 NLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             TCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             cccccCeEECCCC-ccCCCCCchhhcCCCCCCEEECCCCc
Confidence            6889999998886 5766653  45568889999887633

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.90  E-value=4.9e-05  Score=53.44  Aligned_cols=15  Identities=13%  Similarity=0.178  Sum_probs=8.9

Q ss_pred             CCCCCCCceeeeccc
Q 031657            4 LGKLPSLEILRIEEM   18 (155)
Q Consensus         4 l~~L~~L~~L~i~~~   18 (155)
                      ++.|++|++|.++++
T Consensus        58 l~~l~nL~~L~Ls~N   72 (199)
T d2omxa2          58 VEYLNNLTQINFSNN   72 (199)
T ss_dssp             GGGCTTCCEEECCSS
T ss_pred             cccCCCcCcCccccc
Confidence            445666666666655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.89  E-value=2.3e-05  Score=55.16  Aligned_cols=106  Identities=15%  Similarity=0.178  Sum_probs=63.7

Q ss_pred             CCCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccc
Q 031657            2 PPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDIT   81 (155)
Q Consensus         2 p~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~   81 (155)
                      ++++++++|++|.+.++. +..++ .+.+......+.+.++......   ....+++|+.|.++++. +..++.-    .
T Consensus        78 ~~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~l----~  147 (199)
T d2omxa2          78 TPLKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGLTLFNNQITDID---PLKNLTNLNRLELSSNT-ISDISAL----S  147 (199)
T ss_dssp             GGGTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSC-CCCCGGG----T
T ss_pred             ccccCCcccccccccccc-ccccc-cccccccccccccccccccccc---ccchhhhhHHhhhhhhh-hcccccc----c
Confidence            347788999999998764 33332 1222222233334333222211   24567888888887653 4444321    2


Q ss_pred             cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      .+++|+.|.+..+ +++.++. +.++++|++|.++++.
T Consensus       148 ~~~~L~~L~l~~n-~l~~l~~-l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         148 GLTSLQQLNFSSN-QVTDLKP-LANLTTLERLDISSNK  183 (199)
T ss_dssp             TCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             ccccccccccccc-cccCCcc-ccCCCCCCEEECCCCC
Confidence            5788888888776 5777654 4568888888888774

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.86  E-value=4.4e-05  Score=56.66  Aligned_cols=108  Identities=17%  Similarity=0.278  Sum_probs=62.3

Q ss_pred             CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM   83 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~   83 (155)
                      +..+++|+++.+.++ .+..++.....  .+..+.+.++...... ......++.++.|.++++ .+..++...  ...+
T Consensus       146 ~~~l~~L~~l~l~~n-~l~~l~~~~~~--~L~~L~l~~n~~~~~~-~~~~~~~~~l~~L~~s~n-~l~~~~~~~--~~~l  218 (305)
T d1xkua_         146 FQGMKKLSYIRIADT-NITTIPQGLPP--SLTELHLDGNKITKVD-AASLKGLNNLAKLGLSFN-SISAVDNGS--LANT  218 (305)
T ss_dssp             GGGCTTCCEEECCSS-CCCSCCSSCCT--TCSEEECTTSCCCEEC-TGGGTTCTTCCEEECCSS-CCCEECTTT--GGGS
T ss_pred             cccccccCccccccC-CccccCcccCC--ccCEEECCCCcCCCCC-hhHhhccccccccccccc-ccccccccc--cccc
Confidence            456777888888766 34445433221  2222333332211111 112445677777777664 455543221  1257


Q ss_pred             CcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           84 PQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        84 p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ++|+.|++.++ +++.+|.++.++++|+.|.++++.
T Consensus       219 ~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         219 PHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             TTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             ccceeeecccc-cccccccccccccCCCEEECCCCc
Confidence            78888888887 688888777778888888888753

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.78  E-value=8.7e-06  Score=60.96  Aligned_cols=103  Identities=16%  Similarity=0.093  Sum_probs=51.8

Q ss_pred             CCCCCCCceeeecccccce-eeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVK-MVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      +++|++|++|.++++.++. .+|.++.....+..+++.++. +..........+++|+.+.+.+......++....   .
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~-l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~---~  147 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS---S  147 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG---G
T ss_pred             HhcCccccccccccccccccccccccccccccchhhhcccc-ccccccccccchhhhcccccccccccccCchhhc---c
Confidence            7888888888888776665 565544333322333332221 1111111133445555555554443333333322   5


Q ss_pred             CCcccEEeecCCccCcCCCcCCCCCCCc
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQLLRSTTL  110 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L  110 (155)
                      ++.++.+.+..+.--..+|..+..+..+
T Consensus       148 l~~L~~l~l~~n~l~~~ip~~~~~l~~l  175 (313)
T d1ogqa_         148 LPNLVGITFDGNRISGAIPDSYGSFSKL  175 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred             Ccccceeecccccccccccccccccccc
Confidence            6667777766654333566655555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=8.4e-06  Score=60.79  Aligned_cols=38  Identities=16%  Similarity=0.159  Sum_probs=18.0

Q ss_pred             CCcccEEeecCCccCcC-CCcCCCCCCCcCeEEEecCcc
Q 031657           83 MPQVKSLSIFFCEKLKS-LPDQLLRSTTLESLEIADVPI  120 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~-lp~~~~~l~~L~~L~i~~c~~  120 (155)
                      +|+|+.|.+.+|+.++. ....+.++++|++|.+++|..
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~  212 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD  212 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCCC
Confidence            45555555555554431 222333345555555555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=0.0004  Score=50.88  Aligned_cols=110  Identities=14%  Similarity=0.063  Sum_probs=51.1

Q ss_pred             CCCCCCCceeeecccccceeeCcccccC-cccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLGI-GICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      +..+++|++|.+++. .+..++...... .....+.+.....+..........+++|++|++.+...-........   .
T Consensus        52 f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~---~  127 (284)
T d1ozna_          52 FRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR---G  127 (284)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT---T
T ss_pred             hhccccccccccccc-cccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccc---h
Confidence            555666666666544 344443322211 11111122223333333333456678888888876542211111111   3


Q ss_pred             CCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecC
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADV  118 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c  118 (155)
                      ++.|+.+.+... +++.+|.. +..++.|+.|.++++
T Consensus       128 ~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N  163 (284)
T d1ozna_         128 LAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN  163 (284)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             hcccchhhhccc-cccccChhHhccccchhhcccccC
Confidence            555666665553 45555432 334555666655554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.66  E-value=2.8e-05  Score=58.85  Aligned_cols=57  Identities=14%  Similarity=0.135  Sum_probs=28.4

Q ss_pred             CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657           55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c  118 (155)
                      .+++++.|.+++. +++.+.. .   ..+++|+.|.+.+| +++.++ .+.++++|++|+++++
T Consensus       305 ~~~~l~~L~ls~n-~l~~l~~-l---~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         305 NLKNLTYLTLYFN-NISDISP-V---SSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHN  361 (384)
T ss_dssp             GCTTCSEEECCSS-CCSCCGG-G---GGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSS
T ss_pred             hhcccCeEECCCC-CCCCCcc-c---ccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCC
Confidence            4455555555543 3333321 1   14566666666555 455544 2344556666665544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.62  E-value=5.7e-05  Score=53.94  Aligned_cols=58  Identities=10%  Similarity=0.180  Sum_probs=35.5

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEec
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIAD  117 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~  117 (155)
                      ...+++|++|+++++ +++.++.-    ..+++|+.|.+.+| +++.++. +.++++|+.|.+++
T Consensus       169 l~~l~~L~~L~Ls~n-~l~~l~~l----~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         169 LANLSKLTTLKADDN-KISDISPL----ASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCGGG----GGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred             hcccccceecccCCC-ccCCChhh----cCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEEeeC
Confidence            445677777777665 45554321    15677777777776 5666653 44567777777654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.56  E-value=0.00013  Score=55.11  Aligned_cols=35  Identities=17%  Similarity=0.329  Sum_probs=18.2

Q ss_pred             cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c  118 (155)
                      .+++++.|.+..+ +++.++. +.++++|++|++++|
T Consensus       305 ~~~~l~~L~ls~n-~l~~l~~-l~~l~~L~~L~L~~n  339 (384)
T d2omza2         305 NLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFANN  339 (384)
T ss_dssp             GCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS
T ss_pred             hhcccCeEECCCC-CCCCCcc-cccCCCCCEEECCCC
Confidence            4555555555554 4444432 334555666665555

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.53  E-value=0.00011  Score=51.16  Aligned_cols=105  Identities=12%  Similarity=0.140  Sum_probs=64.9

Q ss_pred             CCCceeeecccccce-eeCcccc-cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCc
Q 031657            8 PSLEILRIEEMVSVK-MVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQ   85 (155)
Q Consensus         8 ~~L~~L~i~~~~~l~-~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~   85 (155)
                      +++++|.+++.. +. .++...+ +...+..+.+.+. .+..........+++|++|++++. +++.++.+.-  ..+++
T Consensus        29 ~~l~~L~Ls~N~-i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F--~~l~~  103 (192)
T d1w8aa_          29 LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMF--LGLHQ  103 (192)
T ss_dssp             TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSS--TTCTT
T ss_pred             CCCCEEEeCCCC-CcccccccccCCCceEeeeecccc-ccccccccccccccccceeeeccc-cccccCHHHH--hCCCc
Confidence            478888888763 33 2332222 2222333333322 122222233557888999988775 5777664431  26889


Q ss_pred             ccEEeecCCccCcCCCcC-CCCCCCcCeEEEecC
Q 031657           86 VKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADV  118 (155)
Q Consensus        86 L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c  118 (155)
                      |+.|.+.+. +++.+|.+ +.++++|++|++++-
T Consensus       104 L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_         104 LKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCEEECCSS-CCCEECTTSSTTCTTCCEEECTTC
T ss_pred             ccccccCCc-cccccCHHHhcCCccccccccccc
Confidence            999999886 68888764 567899999998753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.49  E-value=0.00024  Score=50.20  Aligned_cols=79  Identities=16%  Similarity=0.130  Sum_probs=39.1

Q ss_pred             CCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCc
Q 031657            6 KLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQ   85 (155)
Q Consensus         6 ~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~   85 (155)
                      +|.+|++|.+.++. +..+. ++.....+..+++.++ .++..+  ....+++|+.|.+.++ +++.++.-.    .+++
T Consensus        44 ~L~~L~~L~l~~~~-i~~l~-~l~~l~~L~~L~L~~n-~i~~l~--~~~~l~~L~~L~l~~n-~i~~l~~l~----~l~~  113 (210)
T d1h6ta2          44 ELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGN-KLTDIK--PLANLKNLGWLFLDEN-KVKDLSSLK----DLKK  113 (210)
T ss_dssp             HHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSS-CCCCGGGGT----TCTT
T ss_pred             HhcCccEEECcCCC-CCCch-hHhhCCCCCEEeCCCc-cccCcc--ccccCccccccccccc-ccccccccc----cccc
Confidence            46788889888763 44442 1111222233333333 122221  1345667777777654 344444211    4666


Q ss_pred             ccEEeecCC
Q 031657           86 VKSLSIFFC   94 (155)
Q Consensus        86 L~~L~i~~C   94 (155)
                      |+.|.+..+
T Consensus       114 L~~L~l~~~  122 (210)
T d1h6ta2         114 LKSLSLEHN  122 (210)
T ss_dssp             CCEEECTTS
T ss_pred             ccccccccc
Confidence            666666655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00056  Score=50.08  Aligned_cols=109  Identities=10%  Similarity=0.046  Sum_probs=49.5

Q ss_pred             CCCCCCCceeeecccccceeeCccccc-CcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLG-IGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI   82 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~   82 (155)
                      ++.+++|++|++.++. +..+.....+ ...+..+.+.+ ..++..+......+++|+.|++.+. +++.++...-  ..
T Consensus       101 ~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f--~~  175 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAF--RG  175 (284)
T ss_dssp             TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTT--TT
T ss_pred             hcccccCCEEecCCcc-cccccccccchhcccchhhhcc-ccccccChhHhccccchhhcccccC-cccccchhhh--cc
Confidence            6778888888888764 3333222211 11112222221 2233333333445667777776654 3444432211  13


Q ss_pred             CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEec
Q 031657           83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIAD  117 (155)
Q Consensus        83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~  117 (155)
                      +++|+.+.+..+.-..-.|..+.++++|++|++++
T Consensus       176 l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~  210 (284)
T d1ozna_         176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA  210 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ccccchhhhhhccccccChhHhhhhhhcccccccc
Confidence            44555555554422222233444445555555444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.45  E-value=0.00019  Score=53.21  Aligned_cols=56  Identities=25%  Similarity=0.401  Sum_probs=43.9

Q ss_pred             CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCcchh
Q 031657           55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVE  122 (155)
Q Consensus        55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~~l~  122 (155)
                      .+++|++|+++++ +++.++.      .+++|+.|++..| +++.+|..   +.+|++|++++++ ++
T Consensus       282 ~~~~L~~L~Ls~N-~l~~lp~------~~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~-L~  337 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIELPA------LPPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNP-LR  337 (353)
T ss_dssp             CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CS
T ss_pred             cCCCCCEEECCCC-ccCcccc------ccCCCCEEECCCC-cCCccccc---cCCCCEEECcCCc-CC
Confidence            4688999999886 4666652      4789999999877 68888865   5689999999876 44

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.38  E-value=0.00029  Score=52.04  Aligned_cols=108  Identities=15%  Similarity=0.147  Sum_probs=72.2

Q ss_pred             CCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCc
Q 031657            6 KLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQ   85 (155)
Q Consensus         6 ~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~   85 (155)
                      -+++|++|++.++......+..+.+......+.+.++ .+.+........+++|++|+++++ +++.++.+..   .+++
T Consensus       169 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~---~l~~  243 (305)
T d1xkua_         169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLA---DHKY  243 (305)
T ss_dssp             CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTT---TCSS
T ss_pred             cCCccCEEECCCCcCCCCChhHhhccccccccccccc-cccccccccccccccceeeecccc-cccccccccc---cccC
Confidence            4678999999887655444444333222233333332 333333334667899999999987 6888775544   7899


Q ss_pred             ccEEeecCCccCcCCCcC-------CCCCCCcCeEEEecCc
Q 031657           86 VKSLSIFFCEKLKSLPDQ-------LLRSTTLESLEIADVP  119 (155)
Q Consensus        86 L~~L~i~~C~~L~~lp~~-------~~~l~~L~~L~i~~c~  119 (155)
                      |+.|.+.++ +++.++..       .....+|+.|.+++.+
T Consensus       244 L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         244 IQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            999999987 68887642       2346889999998876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.36  E-value=0.0003  Score=49.98  Aligned_cols=59  Identities=12%  Similarity=0.191  Sum_probs=41.2

Q ss_pred             cCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           54 VAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        54 ~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ...++|+.|.+.++. +..+..    ...+++|+.|.+.++ +++.++. +.++++|++|++++|.
T Consensus       148 ~~~~~L~~L~l~~n~-~~~~~~----l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         148 AGLTNLQYLSIGNAQ-VSDLTP----LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             GGCTTCCEEECCSSC-CCCCGG----GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSC
T ss_pred             ccccccccccccccc-cccchh----hcccccceecccCCC-ccCCChh-hcCCCCCCEEECcCCc
Confidence            355677777776543 222221    126899999999887 6888765 4568999999999884

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.34  E-value=0.00072  Score=46.85  Aligned_cols=125  Identities=13%  Similarity=0.126  Sum_probs=71.4

Q ss_pred             eeeecccccceeeCcccccCcccccccccCccccCC-CCCCcccCCCCcceeeccCcccCcccccCCCccccCCcccEEe
Q 031657           12 ILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSS-SSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLS   90 (155)
Q Consensus        12 ~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~   90 (155)
                      .+..++ .++..+|.++.  ..+..+.+++. .++. ........+++|+.|.+.+.. +..++.+.-  ..+++|+.|.
T Consensus        12 ~v~Cs~-~~L~~iP~~lp--~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~~~--~~~~~L~~L~   84 (192)
T d1w8aa_          12 TVDCTG-RGLKEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAF--EGASHIQELQ   84 (192)
T ss_dssp             EEECTT-SCCSSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTT--TTCTTCCEEE
T ss_pred             EEEEeC-CCcCccCCCCC--CCCCEEEeCCC-CCcccccccccCCCceEeeeeccccc-ccccccccc--ccccccceee
Confidence            444433 25666765442  12233333332 2222 223335678999999997754 333332221  2689999999


Q ss_pred             ecCCccCcCCCcC-CCCCCCcCeEEEecCcchhhhhccCCCCCcCcccccCeeEecceec
Q 031657           91 IFFCEKLKSLPDQ-LLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRYE  149 (155)
Q Consensus        91 i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~i~~~~~~~  149 (155)
                      +... +++.+|.. +.++++|++|++++.. ++....    ..+..+..+..+.+.+..+
T Consensus        85 Ls~N-~l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~----~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          85 LGEN-KIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMP----GSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCSC-CCCEECSSSSTTCTTCCEEECCSSC-CCEECT----TSSTTCTTCCEEECTTCCB
T ss_pred             eccc-cccccCHHHHhCCCcccccccCCcc-ccccCH----HHhcCCccccccccccccc
Confidence            9987 78888765 5679999999999864 222211    1123344555565555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=9.9e-05  Score=50.55  Aligned_cols=106  Identities=11%  Similarity=0.118  Sum_probs=64.7

Q ss_pred             CCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCC
Q 031657            5 GKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMP   84 (155)
Q Consensus         5 ~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p   84 (155)
                      ..+++|++|+++++ .+..++ .+.....+..+.+.++. ++..+......+++|+.|.+.+.. +..+..- .....++
T Consensus        38 ~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~~L~L~~N~-i~~~~~l-~~l~~l~  112 (162)
T d1a9na_          38 ATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNS-LVELGDL-DPLASLK  112 (162)
T ss_dssp             GGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCC-CCCGGGG-GGGGGCT
T ss_pred             cccccCCEEECCCC-CCCccC-CcccCcchhhhhccccc-ccCCCccccccccccccceecccc-ccccccc-ccccccc
Confidence            46788999999887 466663 23333333344454442 333332223468999999998753 4443310 1122689


Q ss_pred             cccEEeecCCccCcCCCc----CCCCCCCcCeEEEe
Q 031657           85 QVKSLSIFFCEKLKSLPD----QLLRSTTLESLEIA  116 (155)
Q Consensus        85 ~L~~L~i~~C~~L~~lp~----~~~~l~~L~~L~i~  116 (155)
                      +|+.|.+.+|+ +..+|.    .+.++++|+.|+-.
T Consensus       113 ~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_         113 SLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             TCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCC
Confidence            99999999985 666654    24457888877643

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=7.3e-05  Score=55.46  Aligned_cols=112  Identities=17%  Similarity=0.143  Sum_probs=69.5

Q ss_pred             CCCCCCceeeecccccceeeCccc-c-c-CcccccccccCccc-cCCCCC-CcccCCCCcceeeccCcccCcccccCCCc
Q 031657            5 GKLPSLEILRIEEMVSVKMVGDEF-L-G-IGICDHNHIHGTFS-SSSSSS-SSVVAFPKLEKLDLGIMLQLEEWDFGKED   79 (155)
Q Consensus         5 ~~L~~L~~L~i~~~~~l~~l~~~~-~-~-~~~~~~~~~~~~~~-~~~~~~-~~~~~f~~L~~L~l~~~~~L~~~~~~~~~   79 (155)
                      ..+++|++|.|++|..+..-.... . . ...+..+.+.+|.. ++...- .-...+|+|++|++.+|..+..-....  
T Consensus       118 ~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~--  195 (284)
T d2astb2         118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE--  195 (284)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG--
T ss_pred             HHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhh--
Confidence            357899999999997654321110 0 0 11233444555422 211000 002357999999999998886432111  


Q ss_pred             cccCCcccEEeecCCccCcC-CCcCCCCCCCcCeEEEecC
Q 031657           80 ITIMPQVKSLSIFFCEKLKS-LPDQLLRSTTLESLEIADV  118 (155)
Q Consensus        80 ~~~~p~L~~L~i~~C~~L~~-lp~~~~~l~~L~~L~i~~c  118 (155)
                      ...+++|+.|.+.+|.++.. -...+.++++|+.|++++|
T Consensus       196 l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         196 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            22689999999999998863 2234556899999999988

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0023  Score=45.28  Aligned_cols=63  Identities=11%  Similarity=0.149  Sum_probs=30.5

Q ss_pred             CCCCCCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcceeeccC
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGI   66 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~   66 (155)
                      |..+++|++|.++++.....++.... +......+.+..+..+..........+++|+.|.+.+
T Consensus        49 f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~  112 (242)
T d1xwdc1          49 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN  112 (242)
T ss_dssp             TTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEES
T ss_pred             hhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccch
Confidence            67788888888877765555543221 2222222223333333333322234455555555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.00  E-value=0.00085  Score=43.61  Aligned_cols=61  Identities=13%  Similarity=0.098  Sum_probs=48.9

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ...+++|++|++++. .++.++....   .+++|+.|.+.+. +++.+|. +.++++|+.|.+++..
T Consensus        16 l~~l~~L~~L~ls~N-~l~~lp~~~~---~l~~L~~L~l~~N-~i~~l~~-~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3          16 LEQLLLVTHLDLSHN-RLRALPPALA---ALRCLEVLQASDN-ALENVDG-VANLPRLQELLLCNNR   76 (124)
T ss_dssp             GGGGTTCCEEECCSS-CCCCCCGGGG---GCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC
T ss_pred             cccCCCCCEEECCCC-ccCcchhhhh---hhhcccccccccc-cccccCc-cccccccCeEECCCCc
Confidence            447889999999764 5777765444   7999999999986 7888875 6679999999998754

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0047  Score=43.53  Aligned_cols=103  Identities=17%  Similarity=0.174  Sum_probs=50.7

Q ss_pred             CCCceeeecccccceeeCccc-ccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcc
Q 031657            8 PSLEILRIEEMVSVKMVGDEF-LGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQV   86 (155)
Q Consensus         8 ~~L~~L~i~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L   86 (155)
                      +++++|.+.+. .+..++... .+...+..+.+.++.-....+......++.++++.+..+.++..+....  ...++.|
T Consensus        29 ~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~--~~~l~~L  105 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA--FQNLPNL  105 (242)
T ss_dssp             SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS--EECCTTC
T ss_pred             CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc--ccccccc
Confidence            36888888765 467776542 2222233334433332222222223445666666665555555544332  1246677


Q ss_pred             cEEeecCCccCcCCCcCCCCCCCcCeEEE
Q 031657           87 KSLSIFFCEKLKSLPDQLLRSTTLESLEI  115 (155)
Q Consensus        87 ~~L~i~~C~~L~~lp~~~~~l~~L~~L~i  115 (155)
                      +.+.+.++ ++...+... .+.+++.+.+
T Consensus       106 ~~l~l~~~-~l~~~~~~~-~~~~l~~l~~  132 (242)
T d1xwdc1         106 QYLLISNT-GIKHLPDVH-KIHSLQKVLL  132 (242)
T ss_dssp             CEEEEESC-CCCSCCCCT-TTCBSSCEEE
T ss_pred             cccccchh-hhccccccc-cccccccccc
Confidence            77777665 455444321 2444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.48  E-value=2.4e-05  Score=55.51  Aligned_cols=106  Identities=16%  Similarity=0.148  Sum_probs=63.4

Q ss_pred             CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657            4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM   83 (155)
Q Consensus         4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~   83 (155)
                      ++.|++|++|.++++ .++.++ .+.+...+..+.++++ .++..+. ....+++|+.|.+.+. +++.+..    ...+
T Consensus        44 l~~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~-~~~~~~~L~~L~l~~N-~i~~l~~----~~~l  114 (198)
T d1m9la_          44 LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIEN-LDAVADTLEELWISYN-QIASLSG----IEKL  114 (198)
T ss_dssp             HHHTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEE-EECSCSS-HHHHHHHCCEEECSEE-ECCCHHH----HHHH
T ss_pred             HhcccccceeECccc-CCCCcc-cccCCccccChhhccc-ccccccc-cccccccccccccccc-ccccccc----cccc
Confidence            456888999999876 366553 2222222333344333 1222221 0123456777777664 4555432    1268


Q ss_pred             CcccEEeecCCccCcCCCc--CCCCCCCcCeEEEecCc
Q 031657           84 PQVKSLSIFFCEKLKSLPD--QLLRSTTLESLEIADVP  119 (155)
Q Consensus        84 p~L~~L~i~~C~~L~~lp~--~~~~l~~L~~L~i~~c~  119 (155)
                      ++|+.|.+.++ +++.++.  .+..+++|+.|.+++++
T Consensus       115 ~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         115 VNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence            89999999876 5666653  45678999999999876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.20  E-value=0.0096  Score=43.63  Aligned_cols=88  Identities=11%  Similarity=0.002  Sum_probs=55.7

Q ss_pred             cCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCc-CCCcCCCCCCCcCeEEEecCcchhhhhccCCCCC
Q 031657           54 VAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLK-SLPDQLLRSTTLESLEIADVPIVEENFKKDTGKD  132 (155)
Q Consensus        54 ~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~-~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~  132 (155)
                      ..+++|+.+.+.++.- ...+...+   .+++|+.|.+..+ +++ .+|..+.++++|++|+++++. +...+     .+
T Consensus       218 ~~~~~l~~l~~~~~~l-~~~~~~~~---~~~~L~~L~Ls~N-~l~g~iP~~l~~L~~L~~L~Ls~N~-l~g~i-----P~  286 (313)
T d1ogqa_         218 GSDKNTQKIHLAKNSL-AFDLGKVG---LSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNN-LCGEI-----PQ  286 (313)
T ss_dssp             CTTSCCSEEECCSSEE-CCBGGGCC---CCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSE-EEEEC-----CC
T ss_pred             cccccccccccccccc-cccccccc---cccccccccCccC-eecccCChHHhCCCCCCEEECcCCc-ccccC-----CC
Confidence            3456677776665532 22222222   6889999999887 566 799998899999999998853 22111     23


Q ss_pred             cCcccccCeeEeccee-ccCC
Q 031657          133 WSKISHIPNILISRRY-EQGG  152 (155)
Q Consensus       133 w~~i~~i~~i~~~~~~-~~~~  152 (155)
                      +.+++++..+.+.+.+ ..|.
T Consensus       287 ~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         287 GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             STTGGGSCGGGTCSSSEEEST
T ss_pred             cccCCCCCHHHhCCCccccCC
Confidence            4456666666665554 4443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=95.94  E-value=2.5e-05  Score=55.33  Aligned_cols=61  Identities=16%  Similarity=0.237  Sum_probs=40.1

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ...+++|+.|+++++ .++.++....   .+++|+.|.+..+ +++.++. +.++++|+.|+++++.
T Consensus        66 l~~l~~L~~L~Ls~N-~i~~i~~~~~---~~~~L~~L~l~~N-~i~~l~~-~~~l~~L~~L~L~~N~  126 (198)
T d1m9la_          66 LSGMENLRILSLGRN-LIKKIENLDA---VADTLEELWISYN-QIASLSG-IEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             HHHHTTCCEEECCEE-EECSCSSHHH---HHHHCCEEECSEE-ECCCHHH-HHHHHHSSEEEESEEE
T ss_pred             ccCCccccChhhccc-cccccccccc---ccccccccccccc-ccccccc-ccccccccccccccch
Confidence            556788888888765 3444432211   4567888888776 5776643 4457888899887753

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=95.93  E-value=0.0055  Score=44.88  Aligned_cols=59  Identities=19%  Similarity=0.156  Sum_probs=40.4

Q ss_pred             cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCcchhhhhccCCCCCcCcccccCeeEecceeccCCC
Q 031657           82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRYEQGGP  153 (155)
Q Consensus        82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~i~~~~~~~~~~~  153 (155)
                      .+++|+.|++.+| +++.+|..   +++|+.|.++++. +...-        ...+++.++.+.+...+.+|
T Consensus       282 ~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N~-L~~l~--------~~~~~L~~L~L~~N~L~~lp  340 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIELPAL---PPRLERLIASFNH-LAEVP--------ELPQNLKQLHVEYNPLREFP  340 (353)
T ss_dssp             CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSCCC--------CCCTTCCEEECCSSCCSSCC
T ss_pred             cCCCCCEEECCCC-ccCccccc---cCCCCEEECCCCc-CCccc--------cccCCCCEEECcCCcCCCCC
Confidence            4789999999998 69999976   6799999998764 33221        11345566666665555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0076  Score=40.34  Aligned_cols=64  Identities=13%  Similarity=0.154  Sum_probs=51.0

Q ss_pred             ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657           53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP  119 (155)
Q Consensus        53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~  119 (155)
                      ...+++|++|++.+...++.++...-  ..++.|+.|.+.++ +++.++.. +..+++|+.|++++..
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f--~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDL--RGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGS--CSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             ccCccccCeeecCCCccccccCchhh--ccccccCcceeecc-ccCCcccccccccccccceeccCCC
Confidence            44678899999988888998875432  16899999999987 79988654 6679999999998754

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.54  E-value=0.098  Score=34.69  Aligned_cols=63  Identities=24%  Similarity=0.217  Sum_probs=35.6

Q ss_pred             CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657           55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP  119 (155)
Q Consensus        55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~  119 (155)
                      .++.|++|++++. +++.+..-......+++|+.|.+.+. +++.+++. ......|++|.+.+.|
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCC
Confidence            4777888887664 23333211111125788888888774 56666541 1124467777777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.57  E-value=0.085  Score=39.38  Aligned_cols=62  Identities=27%  Similarity=0.305  Sum_probs=41.2

Q ss_pred             cCCCCcceeeccCcccCcc-----cccCCCccccCCcccEEeecCCccCcC-----CCcCCCCCCCcCeEEEecCc
Q 031657           54 VAFPKLEKLDLGIMLQLEE-----WDFGKEDITIMPQVKSLSIFFCEKLKS-----LPDQLLRSTTLESLEIADVP  119 (155)
Q Consensus        54 ~~f~~L~~L~l~~~~~L~~-----~~~~~~~~~~~p~L~~L~i~~C~~L~~-----lp~~~~~l~~L~~L~i~~c~  119 (155)
                      ...++|++|++++. ++..     +.....  ..-+.|+.|.+.+|. ++.     ++..+...++|++|.++++.
T Consensus        52 ~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~--~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          52 RVNPALAELNLRSN-ELGDVGVHCVLQGLQ--TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HTCTTCCEEECTTC-CCHHHHHHHHHHTTC--STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             hcCCCCCEEECcCC-cCChHHHHHHHHHHh--cCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence            35788999999875 3321     111110  023579999999984 653     44556678999999998875