Citrus Sinensis ID: 031660

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKWKGPPKTDGN
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHccEEEEEcccccccccccccccccEEEEccccccccccccccccccccccccccEEEEccHHHHHHHHHHccccEEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHcHccccccccccccccccccccccEEcccccEEEEccccHHHHccEEEEEEccccccccccccccEEEEEccccccccccccccccccccHHHccccEEEEccHHHHHHHHHHcccEEEEEcccccccccccHHHHcccccccccccc
Coil and Loop (DISEMBL)
MAQSLQRIWshgrtvrgtvcpfsrafsadalvevkpgeigmvsgipeehlRRRVViytpartatqqgsgklgrWKINFMStqkwenplmgwtstgdpyanvgdaglsfdSKEAAREFAERHGweyvvrkphrpllkvksyadnfkwkgppktdgn
Flexible Loop (DISEMBL)
MAQSLQriwshgrtvrgtvcpFSRAFSADAlvevkpgeigmvsgipeehlRRRVVIytpartatqqgsgklgrwKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAErhgweyvvrkphrpllkvksyadnfkwkgppktdgn
Low Complexity Region (SEG)
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKWKGPPKTDGN
Disordered region (IsUnstruct)
******RIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW*********
Disordered Region (DISOPRED)
****************************************MVSGIPEEHLRRRVVIYT**************RWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRP**KVKSYADNFK**********
Disordered Region (DISEMBL)
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKWKGPPKTDGN
Disordered Region (DISPRO)
****************************DALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKWKGPP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKWKGPPKTDGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
Q9FJW4	154	NADH dehydrogenase [ubiqu	yes	no	0.896	0.902	0.720	1e-55
Q5XIF3	175	NADH dehydrogenase [ubiqu	yes	no	0.748	0.662	0.424	1e-22
O43181	175	NADH dehydrogenase [ubiqu	yes	no	0.683	0.605	0.445	1e-22
Q0MQH0	175	NADH dehydrogenase [ubiqu	N/A	no	0.683	0.605	0.445	1e-22
Q66XS7	175	NADH dehydrogenase [ubiqu	N/A	no	0.683	0.605	0.445	2e-22
Q02375	175	NADH dehydrogenase [ubiqu	yes	no	0.683	0.605	0.445	2e-22
P0CB96	175	NADH dehydrogenase [ubiqu	N/A	no	0.683	0.605	0.454	2e-22
P0CB95	175	NADH dehydrogenase [ubiqu	yes	no	0.683	0.605	0.454	2e-22
Q0MQH1	175	NADH dehydrogenase [ubiqu	yes	no	0.683	0.605	0.436	1e-21
Q9CXZ1	175	NADH dehydrogenase [ubiqu	yes	no	0.683	0.605	0.454	9e-21

>sp|Q9FJW4|NDUS4_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1

 Score =  215 bits (547), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/143 (72%), Positives = 122/143 (85%), Gaps = 4/143 (2%)

Query: 13  RTVR--GTVCPFSRAFSADALVE--VKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGS 68
           RT+R   T+   +R F+ DA+VE   K GEIG VSGIPEEHL R+V+IY+PARTATQ GS
Sbjct: 9   RTIRIAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGS 68

Query: 69  GKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVR 128
           GKLG+WKINF+ST KWENPLMGWTSTGDPYANVGD+ L+FDS+EAA+ FAERHGW+Y V+
Sbjct: 69  GKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKVK 128

Query: 129 KPHRPLLKVKSYADNFKWKGPPK 151
           KP+ PLLKVKSY+DNFKWKG P+
Sbjct: 129 KPNTPLLKVKSYSDNFKWKGNPQ 151

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5XIF3|NDUS4_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Rattus norvegicus GN=Ndufs4 PE=1 SV=1

 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 9/125 (7%)

Query: 23  SRAFSADALVEVKPGEIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMST 81
           ++  + D  ++V P     ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + 
Sbjct: 50  TQLITVDEKLDVTP-----LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTR 104

Query: 82  QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYA 141
           ++WENPLMGW ST DP +N+    L+F +KE A  FAE+HGW Y V     P  K KSY 
Sbjct: 105 ERWENPLMGWASTADPLSNM---VLTFSAKEDAVAFAEKHGWSYDVEGRKVPKPKSKSYG 161

Query: 142 DNFKW 146
            NF W
Sbjct: 162 ANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Rattus norvegicus (taxid: 10116)

>sp|O43181|NDUS4_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 70/110 (63%), Gaps = 4/110 (3%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
           P +N+    L+F +KE A  FAE++GW Y + +   P  K KSY  NF W
Sbjct: 120 PLSNM---VLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

>sp|Q0MQH0|NDUS4_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 70/110 (63%), Gaps = 4/110 (3%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
           P +N+    L+F +KE A  FAE++GW Y + +   P  K KSY  NF W
Sbjct: 120 PLSNM---VLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q66XS7|NDUS4_GECJA NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 71/110 (64%), Gaps = 4/110 (3%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW+ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
           P +N+    L+F +KE A  FAE++GW + V +   P  K KSY  NF W
Sbjct: 120 PLSNL---VLTFSTKEDAVAFAEKNGWSFDVEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gecko japonicus (taxid: 146911)

>sp|Q02375|NDUS4_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Bos taurus GN=NDUFS4 PE=1 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 4/110 (3%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+  I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTITGVPEEHIKTRKARIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
           P +N+    L+F +KE A  FAE++GW Y V +   P  K KSY  NF W
Sbjct: 120 PLSNL---VLTFSTKEDAVAFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

>sp|P0CB96|NDUS4_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 70/110 (63%), Gaps = 4/110 (3%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
           P +N+    L+F +KE A  FAE++GW Y V +   P  K KSY  NF W
Sbjct: 120 PLSNM---VLTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

>sp|P0CB95|NDUS4_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 70/110 (63%), Gaps = 4/110 (3%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
           P +N+    L+F +KE A  FAE++GW Y V +   P  K KSY  NF W
Sbjct: 120 PLSNM---VLTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo abelii (taxid: 9601)

>sp|Q0MQH1|NDUS4_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 4/110 (3%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
           P +N+    L+  +KE A  FAE++GW Y + +   P  K KSY  NF W
Sbjct: 120 PLSNM---VLTXSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

>sp|Q9CXZ1|NDUS4_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3

 Score = 99.0 bits (245), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 70/110 (63%), Gaps = 4/110 (3%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
           P +N+    L+F +KE A  FAE++GW Y V +   P  K KSY  NF W
Sbjct: 120 PLSNM---VLTFSAKEDAIAFAEKNGWSYDVEEKKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:2158621	154	FRO1 "FROSTBITE1" [Arabidopsis	0.909	0.915	0.710	7e-54
ZFIN|ZDB-GENE-050522-421	168	ndufs4 "NADH dehydrogenase (ub	0.845	0.779	0.4	2e-24
UNIPROTKB|Q8QGH0	116	NDUFS4 "NADH dehydrogenase" [G	0.683	0.913	0.463	1.8e-23
RGD|1594380	175	Ndufs4 "NADH dehydrogenase (ub	0.683	0.605	0.454	7.8e-23
MGI|MGI:1343135	175	Ndufs4 "NADH dehydrogenase (ub	0.683	0.605	0.454	1e-22
UNIPROTKB|J9PB72	175	NDUFS4 "Uncharacterized protei	0.683	0.605	0.445	1.3e-22
UNIPROTKB|O43181	175	NDUFS4 "NADH dehydrogenase [ub	0.683	0.605	0.445	1.3e-22
UNIPROTKB|Q0MQH0	175	NDUFS4 "NADH dehydrogenase [ub	0.683	0.605	0.445	1.3e-22
UNIPROTKB|P0CB95	175	NDUFS4 "NADH dehydrogenase [ub	0.683	0.605	0.454	1.6e-22
UNIPROTKB|P0CB96	175	NDUFS4 "NADH dehydrogenase [ub	0.683	0.605	0.454	1.6e-22

TAIR|locus:2158621 FRO1 "FROSTBITE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 103/145 (71%), Positives = 123/145 (84%)

Query:    13 RTVR--GTVCPFSRAFSADALVE--VKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGS 68
             RT+R   T+   +R F+ DA+VE   K GEIG VSGIPEEHL R+V+IY+PARTATQ GS
Sbjct:     9 RTIRIAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGS 68

Query:    69 GKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVR 128
             GKLG+WKINF+ST KWENPLMGWTSTGDPYANVGD+ L+FDS+EAA+ FAERHGW+Y V+
Sbjct:    69 GKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKVK 128

Query:   129 KPHRPLLKVKSYADNFKWKGPPKTD 153
             KP+ PLLKVKSY+DNFKWKG P+ +
Sbjct:   129 KPNTPLLKVKSYSDNFKWKGNPQPE 153

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0009631 "cold acclimation" evidence=IMP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

ZFIN|ZDB-GENE-050522-421 ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4, (NADH-coenzyme Q reductase)" [Danio rerio (taxid:7955)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 54/135 (40%), Positives = 83/135 (61%)

Query:    13 RTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKL 71
             R+V  + C  +    +  +   +  +I  ++G+PEEH++ R+V I+ PAR A Q G    
Sbjct:    28 RSVSTSGCRLAEGQGSQLITVDEKLDISTLTGVPEEHIKTRKVRIFVPARNAMQSGVKNT 87

Query:    72 GRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPH 131
              +WKI+F + ++WENPLMGW+ST DP +N+    L+F +KE A  FAE++GW Y + +  
Sbjct:    88 HKWKIDFDTRERWENPLMGWSSTADPLSNMV---LTFSTKEDAIAFAEKNGWSYDITEKR 144

Query:   132 RPLLKVKSYADNFKW 146
              P  +VKSY  NF W
Sbjct:   145 VPKPRVKSYGANFSW 159

GO:0022900 "electron transport chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

UNIPROTKB|Q8QGH0 NDUFS4 "NADH dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 51/110 (46%), Positives = 71/110 (64%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+P+EH++ RRV I+ PAR A Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:     1 DISTLTGVPDEHIKTRRVHIFVPARNAMQAGVNNTKKWKMEFDNRERWENPLMGWASTAD 60

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
             P +N+    L+F +KE A  FAE++GW Y V +   P  K KSY  NF W
Sbjct:    61 PLSNMV---LTFSTKEDAIAFAEKNGWNYDVEEKKIPKPKSKSYGANFSW 107

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

RGD|1594380 Ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4" [Rattus norvegicus (taxid:10116)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 50/110 (45%), Positives = 69/110 (62%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             ++  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DVTPLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
             P +N+    L+F +KE A  FAE+HGW Y V     P  K KSY  NF W
Sbjct:   120 PLSNMV---LTFSAKEDAVAFAEKHGWSYDVEGRKVPKPKSKSYGANFSW 166

GO:0001932 "regulation of protein phosphorylation" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA;ISO

GO:0007420 "brain development" evidence=IEA;ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISO;IMP

GO:0019933 "cAMP-mediated signaling" evidence=IEA;ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA;ISO

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0045333 "cellular respiration" evidence=IEA;ISO

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IEA;ISO

GO:0051591 "response to cAMP" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA;ISO

MGI|MGI:1343135 Ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4" [Mus musculus (taxid:10090)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 50/110 (45%), Positives = 70/110 (63%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
             P +N+    L+F +KE A  FAE++GW Y V +   P  K KSY  NF W
Sbjct:   120 PLSNMV---LTFSAKEDAIAFAEKNGWSYDVEEKKVPKPKSKSYGANFSW 166

GO:0001932 "regulation of protein phosphorylation" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO;IDA

GO:0006810 "transport" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO

GO:0045271 "respiratory chain complex I" evidence=ISO

GO:0045333 "cellular respiration" evidence=ISO

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISO

GO:0051591 "response to cAMP" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0070469 "respiratory chain" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=ISO

UNIPROTKB|J9PB72 NDUFS4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/110 (44%), Positives = 70/110 (63%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARDNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
             P +N+    L+F +KE A  FAE++GW Y + +   P  K KSY  NF W
Sbjct:   120 PLSNMV---LTFSTKEDAAAFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166

GO:0022900 "electron transport chain" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|O43181 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/110 (44%), Positives = 70/110 (63%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
             P +N+    L+F +KE A  FAE++GW Y + +   P  K KSY  NF W
Sbjct:   120 PLSNMV---LTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IMP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0019933 "cAMP-mediated signaling" evidence=IMP

GO:0051591 "response to cAMP" evidence=IMP

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;IMP

GO:0045333 "cellular respiration" evidence=IMP

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IMP

GO:0001932 "regulation of protein phosphorylation" evidence=IMP

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q0MQH0 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Gorilla gorilla gorilla (taxid:9595)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/110 (44%), Positives = 70/110 (63%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
             P +N+    L+F +KE A  FAE++GW Y + +   P  K KSY  NF W
Sbjct:   120 PLSNMV---LTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0051591 "response to cAMP" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

UNIPROTKB|P0CB95 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 50/110 (45%), Positives = 70/110 (63%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
             P +N+    L+F +KE A  FAE++GW Y V +   P  K KSY  NF W
Sbjct:   120 PLSNMV---LTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0051591 "response to cAMP" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

UNIPROTKB|P0CB96 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Pongo pygmaeus (taxid:9600)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 50/110 (45%), Positives = 70/110 (63%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
             P +N+    L+F +KE A  FAE++GW Y V +   P  K KSY  NF W
Sbjct:   120 PLSNMV---LTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0051591 "response to cAMP" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FJW4	NDUS4_ARATH	No assigned EC number	0.7202	0.8967	0.9025	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00010578001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_270, whole genome shotgun sequence); (154 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00028496001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (399 aa)			•	•		•	•		0.676
	GSVIVG00022315001	RecName- Full=NADH-ubiquinone oxidoreductase 75 kDa subunit; EC=1.6.5.3; (746 aa)				•		•	•		0.676
	GSVIVG00023838001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (254 aa)				•		•	•		0.667
	GSVIVG00036386001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (223 aa)				•	•	•	•		0.644
	nad9	SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence;; Core subunit [...] (190 aa)				•		•	•		0.640
	GSVIVG00014042001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (158 aa)			•	•		•			0.577
	GSVIVG00032166001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (209 aa)				•		•	•		0.548
	GSVIVG00025731001	SubName- Full=Chromosome chr19 scaffold_35, whole genome shotgun sequence; (475 aa)				•		•	•		0.490
	GSVIVG00030686001	SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgu [...] (100 aa)				•		•			0.460
	GSVIVG00037763001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (169 aa)				•		•	•		0.437

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	155
pfam04800	101	pfam04800, ETC_C1_NDUFA4, ETC complex I subunit co	1e-42

>gnl|CDD|218273 pfam04800, ETC_C1_NDUFA4, ETC complex I subunit conserved region

 Score =  136 bits (344), Expect = 1e-42
 Identities = 50/100 (50%), Positives = 64/100 (64%), Gaps = 2/100 (2%)

Query: 52  RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSK 111
           R   IY PAR A Q G  +  +W + F  + +WENPLMGWTSTGDP +N  +  L+F +K
Sbjct: 1   RTARIYRPARNAMQSGRARTKKWTLEFDRSARWENPLMGWTSTGDPLSNQME--LTFPTK 58

Query: 112 EAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKWKGPPK 151
           EAA  FAER GWEY V +P+ P  K K+Y+DNF W    +
Sbjct: 59  EAAIAFAERQGWEYDVEEPNAPKAKPKAYSDNFSWNRRTR 98

Family of pankaryotic NADH-ubiquinone oxidoreductase subunits (EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
KOG3389	178	consensus NADH:ubiquinone oxidoreductase, NDUFS4/1	100.0
PF04800	101	ETC_C1_NDUFA4: ETC complex I subunit conserved reg	100.0
PF09954	62	DUF2188: Uncharacterized protein conserved in bact	81.52

>KOG3389 consensus NADH:ubiquinone oxidoreductase, NDUFS4/18 kDa subunit [Energy production and conversion]

Probab=100.00  E-value=3.1e-55  Score=347.00  Aligned_cols=131  Identities=60%  Similarity=1.081  Sum_probs=123.8

Q ss_pred             ccccccccccc-c--cccCccccccCCCcccc-cceEEEecCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCCc
Q 031660           22 FSRAFSADALV-E--VKPGEIGMVSGIPEEHL-RRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDP   97 (155)
Q Consensus        22 ~~r~fs~d~~~-~--~~~~~~~~vsG~P~e~~-~r~vrIy~Pak~a~QSG~~~t~~W~LeFe~~~~w~nPLMGWtss~D~   97 (155)
                      +.|+|+.|+.+ +  .+-++++-|+|+|+||+ .|+||||.|+|++||||.+|+++|+|||+.+.+||||||||+|++||
T Consensus        42 la~~~~~Dak~ve~d~kld~i~~v~GvPeeH~~sRkvrIf~PAR~~tQSg~gntkkWkiefd~r~rWENPLMGWtsTaDP  121 (178)
T KOG3389|consen   42 LARPFATDAKVVESDYKLDEIGKVSGVPEEHLDSRKVRIFSPARTATQSGSGNTKKWKIEFDSRLRWENPLMGWTSTADP  121 (178)
T ss_pred             ccccccccceeEeehhhhcccccccCCChHHhcceeEEEecchhhhhhcccCCccceEEEecchhhccCccccccccCCc
Confidence            47899999955 4  45678999999999999 69999999999999999999999999999999999999999999999


Q ss_pred             cCccCCceeecCCHHHHHHHHHHcCccEEEecCCCCccCcccccccCCCCCCCCCC
Q 031660           98 YANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKWKGPPKTD  153 (155)
Q Consensus        98 ~sqv~~~~L~F~SkE~AI~faek~Gw~Y~V~~p~~~~~~~KsYadNF~~~g~p~~~  153 (155)
                      |+||+ +.|.|+|+||||.|||||||+|.|++|+.+++++|+|||||+|||++.-+
T Consensus       122 lsNvg-m~L~F~tkEdA~sFaEkngW~ydveep~~pk~K~KsYg~NFsWn~rtr~~  176 (178)
T KOG3389|consen  122 LSNVG-MALAFDTKEDAKSFAEKNGWDYDVEEPNTPKLKVKSYGDNFSWNGRTRPE  176 (178)
T ss_pred             ccccc-eeeeeccHHHHHHHHHHcCCcccccCCCCCccccccccccccccCCCCCC
Confidence            99996 79999999999999999999999999999999999999999999998654

>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=100.00  E-value=1.9e-51  Score=305.94  Aligned_cols=96  Identities=49%  Similarity=0.987  Sum_probs=60.8

Q ss_pred             ceEEEecCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCCccCc-cCCceeecCCHHHHHHHHHHcCccEEEecC
Q 031660           52 RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYAN-VGDAGLSFDSKEAAREFAERHGWEYVVRKP  130 (155)
Q Consensus        52 r~vrIy~Pak~a~QSG~~~t~~W~LeFe~~~~w~nPLMGWtss~D~~sq-v~~~~L~F~SkE~AI~faek~Gw~Y~V~~p  130 (155)
                      |+||||+|+|+|||||++++++|+|||+..++|+|||||||||+||++| |   +|+|+|+|+||+|||+|||+|+|++|
T Consensus         1 r~arIy~pak~amQSG~~~t~~W~lefe~~~~~~~PLMGWtss~D~~~q~v---~l~F~skE~Ai~yaer~G~~Y~V~~p   77 (101)
T PF04800_consen    1 RKARIYQPAKNAMQSGTANTKKWVLEFETRARWENPLMGWTSSGDPLSQSV---RLKFDSKEDAIAYAERNGWDYEVEEP   77 (101)
T ss_dssp             -EEEEE--SS--STTTT-SS--EEEEEEESSS---TTT-SSSS--SEEE-C---EEEESSHHHHHHHHHHCT-EEEEE-S
T ss_pred             CeEEEeCCCCCCCCCCCCCCCCEEEeecCcCCcCCCccCCCCCCChhhCee---EeeeCCHHHHHHHHHHcCCeEEEeCC
Confidence            6899999999999999999999999999889999999999999999998 7   99999999999999999999999999


Q ss_pred             CCCccCcccccccCCCCCCC
Q 031660          131 HRPLLKVKSYADNFKWKGPP  150 (155)
Q Consensus       131 ~~~~~~~KsYadNF~~~g~p  150 (155)
                      +.+++++|+|||||+|+++.
T Consensus        78 ~~r~~~~ksY~dNF~~~r~~   97 (101)
T PF04800_consen   78 KKRKRRPKSYADNFSWNRRT   97 (101)
T ss_dssp             TT------------------
T ss_pred             CCCcCCcccHHHhCCcCCCC
Confidence            99999999999999999863

6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.

>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function

Probab=81.52  E-value=2.2  Score=28.28  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=23.8

Q ss_pred             eeecCCHHHHHHHHH----Hc-CccEEEecCCCCccCcccc
Q 031660          105 GLSFDSKEAAREFAE----RH-GWEYVVRKPHRPLLKVKSY  140 (155)
Q Consensus       105 ~L~F~SkE~AI~fae----k~-Gw~Y~V~~p~~~~~~~KsY  140 (155)
                      ...|+|+++||++|+    ++ +-+..|....-+.....+|
T Consensus        22 ~~~~~Tk~eAi~~Ar~~a~~~~~~el~Ih~~dG~i~~~~sy   62 (62)
T PF09954_consen   22 SKTFDTKAEAIEAARELAKNQGGGELIIHGRDGKIREERSY   62 (62)
T ss_pred             ccccCcHHHHHHHHHHHHHhCCCcEEEEECCCCeEEEeecC
Confidence            568999999998875    44 6677776654433333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	155
2jya_A	106	Nmr Solution Structure Of Protein Atu1810 From Agro		1e-11
2lju_A	108	Solution Structure Of Putative Oxidoreductase From		9e-11

>pdb|2JYA|A Chain A, Nmr Solution Structure Of Protein Atu1810 From Agrobacterium Tumefaciens. Northeast Structural Genomics Consortium Target Atr23, Ontario Centre For Structural Proteomics Target Atc1776 Length = 106

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 56  IYTPARTATQQGSGKLGRWKINF-MSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAA 114
           IY PA+TA Q G+ K   W + F     +  +P+MG+TS+ D    V    L+F+++E A
Sbjct: 8   IYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQVK---LTFETQEQA 64
Query: 115 REFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
             +A+R G EY V  P     KV SY DNF++
Sbjct: 65  EAYAQRKGIEYRVILPKEATRKVVSYTDNFRF 96

>pdb|2LJU|A Chain A, Solution Structure Of Putative Oxidoreductase From Ehrlichia Chaffeensis, Seattle Structural Genomics Center For Infectious Disease (Ssgcid) Length = 108

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 53  RVVIYTPARTATQQGSGKLGRWKINFM-STQKWENPLMGWTSTGDPYANVGDAGLSFDSK 111
           R  IY PA++  Q G  KL  WK+ F  S  ++  PLM WT + D    V    LSF ++
Sbjct: 13  RARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQVC---LSFTTR 69
Query: 112 EAAREFAERHGWEYVVRKPHRPLLKVKSYADNF 144
           E A  +A  H  +Y V + +   +  KSYADNF
Sbjct: 70  ELAIAYAVAHKIDYTVLQDNPRTIVPKSYADNF 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
2lju_A	108	Putative oxidoreductase; structural genomics, seat	5e-40
2jya_A	106	AGR_C_3324P, uncharacterized protein ATU1810; prot	5e-38

>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis} Length = 108

 Score =  129 bits (327), Expect = 5e-40
 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 43  SGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFM-STQKWENPLMGWTSTGDPYAN 100
            G  +E +   R  IY PA++  Q G  KL  WK+ F  S  ++  PLM WT + D    
Sbjct: 2   PGSMQEQVSNVRARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQ 61

Query: 101 VGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKWK 147
           V    LSF ++E A  +A  H  +Y V + +   +  KSYADNF   
Sbjct: 62  VC---LSFTTRELAIAYAVAHKIDYTVLQDNPRTIVPKSYADNFTKP 105

>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str} Length = 106

 Score =  124 bits (313), Expect = 5e-38
 Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 5/106 (4%)

Query: 52  RRVVIYTPARTATQQGSGKLGRWKINFM-STQKWENPLMGWTSTGDPYANVGDAGLSFDS 110
               IY PA+TA Q G+ K   W + F     +  +P+MG+TS+ D    V    L+F++
Sbjct: 4   MSAKIYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQVK---LTFET 60

Query: 111 KEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKWKGP-PKTDGN 155
           +E A  +A+R G EY V  P     KV SY DNF++    P T G+
Sbjct: 61  QEQAEAYAQRKGIEYRVILPKEATRKVVSYTDNFRFNRTQPWTHGS 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
2lju_A	108	Putative oxidoreductase; structural genomics, seat	100.0
2jya_A	106	AGR_C_3324P, uncharacterized protein ATU1810; prot	100.0
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	84.19
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	83.84

>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}

Probab=100.00  E-value=7.9e-53  Score=315.65  Aligned_cols=104  Identities=35%  Similarity=0.582  Sum_probs=97.0

Q ss_pred             ccccCCCcccccceEEEecCCCCCCCCCCCCCCCcEEEccCC-CCCCCCCCCCCCCCCccCccCCceeecCCHHHHHHHH
Q 031660           40 GMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMST-QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFA  118 (155)
Q Consensus        40 ~~vsG~P~e~~~r~vrIy~Pak~a~QSG~~~t~~W~LeFe~~-~~w~nPLMGWtss~D~~sqv~~~~L~F~SkE~AI~fa  118 (155)
                      +...|.|+.   ++||||+|+|+|||||++++++|+|||++. ++|+|||||||||+||++||   +|+|+|+|+||+||
T Consensus         3 ~~~~~~~~~---~~arIy~Pak~amQSG~~~t~~W~lefe~~~~r~~nPLMGWtsS~D~~~qv---~L~F~skE~AiayA   76 (108)
T 2lju_A            3 GSMQEQVSN---VRARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQV---CLSFTTRELAIAYA   76 (108)
T ss_dssp             --CCCCCCC---CEEEEECCCCCCSSSSCCSCCCEEEEECCCSSCCCCCCCCCSSSCCCCCCS---CEEESSHHHHHHHH
T ss_pred             cccCCCCCC---CEEEEeCCCCCccccCCCCCCceEEEEecCCCCccCCCccccCCCCccccc---eEecCCHHHHHHHH
Confidence            445666766   889999999999999999999999999996 69999999999999999998   99999999999999


Q ss_pred             HHcCccEEEecCCCCccCcccccccCCCCCC
Q 031660          119 ERHGWEYVVRKPHRPLLKVKSYADNFKWKGP  149 (155)
Q Consensus       119 ek~Gw~Y~V~~p~~~~~~~KsYadNF~~~g~  149 (155)
                      |||||+|+|++|+++++++|+|||||+|++.
T Consensus        77 ek~G~~y~V~ep~~~~~r~ksYadNF~~~r~  107 (108)
T 2lju_A           77 VAHKIDYTVLQDNPRTIVPKSYADNFTKPRD  107 (108)
T ss_dssp             HHTTCEEEEECSSCCCCCCCCCCCCCCCCCC
T ss_pred             HHcCCEEEEecCCcccCCcCchHHHCCccCC
Confidence            9999999999999999999999999999975

>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}

Probab=100.00  E-value=6e-52  Score=310.00  Aligned_cols=96  Identities=38%  Similarity=0.649  Sum_probs=77.1

Q ss_pred             cceEEEecCCCCCCCCCCCCCCCcEEEccCC-CCCCCCCCCCCCCCCccCccCCceeecCCHHHHHHHHHHcCccEEEec
Q 031660           51 RRRVVIYTPARTATQQGSGKLGRWKINFMST-QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRK  129 (155)
Q Consensus        51 ~r~vrIy~Pak~a~QSG~~~t~~W~LeFe~~-~~w~nPLMGWtss~D~~sqv~~~~L~F~SkE~AI~faek~Gw~Y~V~~  129 (155)
                      ..+||||+|+|+|||||++++++|+|||++. ++|+|||||||||+||++||   +|+|+|+|+||+|||||||+|+|++
T Consensus         3 ~m~arIy~Pak~amQSG~~~t~~W~lefe~~~~rw~nPLMGWtsS~D~~~qv---~L~F~skE~AiayAek~G~~y~V~e   79 (106)
T 2jya_A            3 HMSAKIYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQV---KLTFETQEQAEAYAQRKGIEYRVIL   79 (106)
T ss_dssp             -CEEEEECCSSCCCTTTTCCSCCEEEEEEEECCSCCCTTTCSCSCCCSEEEE---EEEESSHHHHHHHHHHHTCEEEECC
T ss_pred             CcEEEEeCCCCCccccCCCCCCceEEEEecCCCCccCCCcCcCCCCCccccc---eEecCCHHHHHHHHHHcCCEEEEeC
Confidence            3679999999999999999999999999986 79999999999999999998   9999999999999999999999999


Q ss_pred             CCCCccCcccccccCCCCCC
Q 031660          130 PHRPLLKVKSYADNFKWKGP  149 (155)
Q Consensus       130 p~~~~~~~KsYadNF~~~g~  149 (155)
                      |+++++++|+|||||+|+++
T Consensus        80 p~~~~~r~ksYadNF~~~r~   99 (106)
T 2jya_A           80 PKEATRKVVSYTDNFRFNRT   99 (106)
T ss_dssp             CTTC----------------
T ss_pred             CCcCcCCcCchHHhCCcCCC
Confidence            99999999999999999875

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=84.19  E-value=0.47  Score=37.92  Aligned_cols=22  Identities=23%  Similarity=0.555  Sum_probs=20.1

Q ss_pred             eeecCCHHHHHHHHHHcCccEE
Q 031660          105 GLSFDSKEAAREFAERHGWEYV  126 (155)
Q Consensus       105 ~L~F~SkE~AI~faek~Gw~Y~  126 (155)
                      .|.|+|.++++.||+++||...
T Consensus       199 ~L~f~s~~e~~~f~~~~gw~i~  220 (229)
T 4b0z_A          199 LLYLENTKETEKLAEERGWDIR  220 (229)
T ss_dssp             HTTCSSHHHHHHHHHHHTCEEE
T ss_pred             HhCCCCHHHHHHHHHHcCCEEe
Confidence            5899999999999999999763

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=83.84  E-value=0.88  Score=38.49  Aligned_cols=45  Identities=18%  Similarity=0.119  Sum_probs=29.5

Q ss_pred             eeecCCHHHHHHHHHHcCccEEEecCCCCccCcccccccCCCCCCCC
Q 031660          105 GLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKWKGPPK  151 (155)
Q Consensus       105 ~L~F~SkE~AI~faek~Gw~Y~V~~p~~~~~~~KsYadNF~~~g~p~  151 (155)
                      .|.|+|.|++++||+.+||.+. .+. ....+...+-+.|..++.|.
T Consensus       233 ~L~Fds~ee~~~F~~~~gl~~~-~~~-~~~~~~~~~~~~~~~~~~p~  277 (316)
T 3t5v_A          233 MLLFNNRQEIIEFCNYYSIEII-NGD-AADLKTLQHYSHKLSETQPL  277 (316)
T ss_dssp             HTTCSSHHHHHHHHHHTTCCEE-TTT-EECGGGCCCSSSSCTTSCCC
T ss_pred             HhCCCCHHHHHHHHHHCCCeEe-CCC-CchHHhhcchhccccccCCC
Confidence            5899999999999999999996 211 11122223445555555553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d1k92a1	188	Argininosuccinate synthetase, N-terminal domain {E	86.22

>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Argininosuccinate synthetase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.22  E-value=0.11  Score=34.97  Aligned_cols=23  Identities=17%  Similarity=0.387  Sum_probs=20.0

Q ss_pred             eecCCHHHHHHHHHHcCccEEEe
Q 031660          106 LSFDSKEAAREFAERHGWEYVVR  128 (155)
Q Consensus       106 L~F~SkE~AI~faek~Gw~Y~V~  128 (155)
                      |.|.||+|=++||++||++|...
T Consensus       163 ~~~~sk~ei~~ya~~~gi~~~~~  185 (188)
T d1k92a1         163 DELGGRHEMSEFMIACGFDYKMS  185 (188)
T ss_dssp             HHSSSHHHHHHHHHHTTCCCCCC
T ss_pred             cccCCHHHHHHHHHHcCCCCCCC
Confidence            45679999999999999999764