Citrus Sinensis ID: 031662

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MEQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGFTVS
Secondary Structure (PSIPRED)
ccccHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
meqdadpsinrtqttetsspeNIDALLAAARYDDIEDVISLasagvpldskdsqgrTALHMASANGHLGIVEYLIGrgvdinasneekntplhyACLNGHTEVAKKLVLSGANisvlnsheqtpidealsrgkMDIIDAINTAVAQLELGGFTVS
Flexible Loop (DISEMBL)
meqdadpsinrtqttetsspenIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGFTVS
Low Complexity Region (SEG)
MEQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGFTVS
Disordered region (IsUnstruct)
***********************DALLAAARYDDIEDVISLASAG*************LHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHE**PIDEALSRGKMDIIDAINTAVAQLELGGF***
Disordered Region (DISOPRED)
MEQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGFTV*
Disordered Region (DISEMBL)
*******************PENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGFTVS
Disordered Region (DISPRO)
MEQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGFTVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
P53355	1430	Death-associated protein	yes	no	0.735	0.079	0.350	1e-15
Q80YE7	1442	Death-associated protein	yes	no	0.735	0.079	0.350	2e-15
Q9STP8	354	Acyl-CoA-binding domain-c	no	no	0.677	0.296	0.361	2e-15
Q9HFE7	146	Ankyrin repeat-containing	yes	no	0.741	0.787	0.385	8e-15
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.709	0.027	0.345	2e-14
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	no	0.709	0.028	0.345	2e-14
Q9SM23	338	Acyl-CoA-binding domain-c	no	no	0.677	0.310	0.352	3e-14
Q9SAR5	342	Ankyrin repeat domain-con	no	no	0.696	0.315	0.379	3e-14
O95271	1327	Tankyrase-1 OS=Homo sapie	no	no	0.735	0.085	0.376	3e-14
Q6PFX9	1320	Tankyrase-1 OS=Mus muscul	no	no	0.735	0.086	0.376	6e-14

>sp|P53355|DAPK1_HUMAN Death-associated protein kinase 1 OS=Homo sapiens GN=DAPK1 PE=1 SV=6

 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 68/117 (58%)

Query: 24  DALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA 83
           +A+  AAR+  ++ +  L+    PLD KD  G  ALH+A+  GH  + + L   G + N 
Sbjct: 414 NAVYWAARHGHVDTLKFLSENKCPLDVKDKSGEMALHVAARYGHADVAQLLCSFGSNPNI 473

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
            ++E+ TPLH A  +G+  VAK L  +G N+++ N   +TP+  A +RG  DI++ +
Sbjct: 474 QDKEEETPLHCAAWHGYYSVAKALCEAGCNVNIKNREGETPLLTASARGYHDIVECL 530

Isoform 2 cannot induce apoptosis but can induce membrane blebbing.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q80YE7|DAPK1_MOUSE Death-associated protein kinase 1 OS=Mus musculus GN=Dapk1 PE=1 SV=3

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 68/117 (58%)

Query: 24  DALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA 83
           +A+  A+R+  ++ +  L     PLD KD  G TALH+A+  GH  +V+ L   G + + 
Sbjct: 414 NAIYWASRHGHVDTLKFLNENKCPLDVKDKSGETALHVAARYGHADVVQLLCSFGSNPDF 473

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
            ++E+ TPLH A  +G+  VAK L   G N+++ N   +TP+  A +RG  DI++ +
Sbjct: 474 QDKEEETPLHCAAWHGYYSVAKALCEVGCNVNIKNREGETPLLTASARGYHDIVECL 530

Calcium/calmodulin-dependent serine/threonine kinase involved in multiple cellular signaling pathways that trigger cell survival, apoptosis, and autophagy. Regulates both type I apoptotic and type II autophagic cell deaths signal, depending on the cellular setting. The former is caspase-dependent, while the latter is caspase-independent and is characterized by the accumulation of autophagic vesicles. Phosphorylates PIN1 resulting in inhibition of its catalytic activity, nuclear localization, and cellular function. Phosphorylates TPM1, enhancing stress fiber formation in endothelial cells. Phosphorylates STX1A and significantly decreases its binding to STXBP1. Phosphorylates PRKD1 and regulates JNK signaling by binding and activating PRKD1 under oxidative stress. Phosphorylates BECN1, reducing its interaction with BCL2 and BCL2L1 and promoting the induction of autophagy. Phosphorylates TSC2, disrupting the TSC1-TSC2 complex and stimulating mTORC1 activity in a growth factor-dependent pathway. Phosphorylates RPS6, MYL9 and DAPK3 (By similarity). Acts as a signaling amplifier of NMDA receptors at extrasynaptic sites for mediating brain damage in stroke. Cerebral ischemia recruits DAPK1 into the NMDA receptor complex and it phosphorylates GRINB at Ser-1303 inducing injurious Ca(2+) influx through NMDA receptor channels, resulting in an irreversible neuronal death.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9STP8|ACBP2_ARATH Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=ACBP2 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 63/105 (60%)

Query: 22  NIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDI 81
            IDA+   AR  ++E+++    +G+P++++DS+GRT LH A   GHL I + L+ +  D+
Sbjct: 233 KIDAIHGFAREGEVENLLKSIESGIPVNARDSEGRTPLHWAIDRGHLNIAKVLVDKNADV 292

Query: 82  NASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPID 126
           NA + E  TPLHYA +     +A+ LV   AN +  +    +P+D
Sbjct: 293 NAKDNEGQTPLHYAVVCDREAIAEFLVKQNANTAAKDEDGNSPLD 337

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with palmitoyl-CoA, but not with oleoyl-CoA. Binds to lead ions (Pb). May function as an intracellular carrier of acyl-CoA esters. Required for proper phospholipid and, to a lower extent, galactolipid composition.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9HFE7|YNW5_SCHPO Ankyrin repeat-containing protein P16F5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP16F5.05c PE=4 SV=1

 Score = 79.3 bits (194), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 7/122 (5%)

Query: 22  NIDALLAAARYDDIEDVISLASAGVP--LDSKDSQGRTALHMASANGHLGIVEYLI---G 76
           ++D L+ A R  D E+++       P  L  +D  G + LHMASANGH+ +V+ +I    
Sbjct: 2   DVDDLIYACRAAD-EELLDEIIEKCPQELSRRDENGNSGLHMASANGHIAVVQKIIPYLN 60

Query: 77  RGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
           + V INA NE  NT +H+A LNGH E+ K L+ +G +  + N +E++PI EA  R +  +
Sbjct: 61  KEV-INAQNESGNTAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSPIYEADIRNQQKV 119

Query: 137 ID 138
           +D
Sbjct: 120 MD 121

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 68/113 (60%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           + L AAR  +++ V+     G+ +++ +  G  ALH+A+  GH+G+V+ L+GRG  ++++
Sbjct: 34  SFLRAARAGNLDKVVEYLKGGIDINTCNQNGLNALHLAAKEGHVGLVQELLGRGSSVDSA 93

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            ++ NT LH A L G  EV K LV  GANI+  + +  TP+  A     +D++
Sbjct: 94  TKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVV 146

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 68/113 (60%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           + L AAR  +++ V+     G+ +++ +  G  ALH+A+  GH+G+V+ L+GRG  ++++
Sbjct: 34  SFLRAARAGNLDKVVEYLKGGIDINTCNQNGLNALHLAAKEGHVGLVQELLGRGSSVDSA 93

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            ++ NT LH A L G  EV K LV  GANI+  + +  TP+  A     +D++
Sbjct: 94  TKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVV 146

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q9SM23|ACBP1_ARATH Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=ACBP1 PE=1 SV=2

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 63/105 (60%)

Query: 22  NIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDI 81
            IDA+ A AR  ++E+++     G+P++++DS+GRT LH A   GHL + E L+ +  D+
Sbjct: 218 KIDAIHAFAREGEVENLLKCIENGIPVNARDSEGRTPLHWAIDRGHLNVAEALVDKNADV 277

Query: 82  NASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPID 126
           NA + E  T LHYA +     +A+ LV   A+ ++ +    +P+D
Sbjct: 278 NAKDNEGQTSLHYAVVCEREALAEFLVKQKADTTIKDEDGNSPLD 322

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with arachidonyl-CoA, barely with oleoyl-CoA, but not with palmitoyl-CoA. Confers tolerance and binds to lead ions Pb(2+), probably by promoting lead translocation from roots to shoots. May function as an intracellular carrier of acyl-CoA esters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAR5|AKR2_ARATH Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 63/108 (58%)

Query: 30  ARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKN 89
           A   D+E + +  ++G   D +DS+GRTALH A   G L   + LI  G  +NA ++ KN
Sbjct: 226 ASLGDVEGLKAALASGGNKDEEDSEGRTALHFACGYGELKCAQVLIDAGASVNAVDKNKN 285

Query: 90  TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           TPLHYA   G  E    L+ +GA +++ N  E+TPID A    +++++
Sbjct: 286 TPLHYAAGYGRKECVSLLLENGAAVTLQNLDEKTPIDVAKLNSQLEVV 333

Seems to be involved in the regulation of hydrogen peroxide levels during biotic and abiotic stresses by optimizing the ascorbate peroxidase 3 (APX3) hydrogen peroxide-degrading activity. This regulation might be monitored by GRF6.

Arabidopsis thaliana (taxid: 3702)

>sp|O95271|TNKS1_HUMAN Tankyrase-1 OS=Homo sapiens GN=TNKS PE=1 SV=2

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 71/117 (60%), Gaps = 3/117 (2%)

Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGR--TALHMASANGHLGIVEYLIGRGVDINA 83
           LL A++  D+E V  L S+   ++ +D +GR  T LH A+    + +VEYL+  G D++A
Sbjct: 654 LLEASKAGDLETVKQLCSS-QNVNCRDLEGRHSTPLHFAAGYNRVSVVEYLLHHGADVHA 712

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
            ++    PLH AC  GH EVA+ LV  GA+++V +  + TP+ EA ++GK +I   +
Sbjct: 713 KDKGGLVPLHNACSYGHYEVAELLVRHGASVNVADLWKFTPLHEAAAKGKYEICKLL 769

Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. Acts as an activator of the Wnt signaling pathway by mediating poly-ADP-ribosylation of AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex: poly-ADP-ribosylated target proteins are recognized by RNF146, which mediates their ubiquitination and subsequent degradation. Also mediates poly-ADP-ribosylation of BLZF1 and CASC3, followed by recruitment of RNF146 and subsequent ubiquitination. Mediates poly-ADP-ribosylation of TERF1, thereby contributing to the regulation of telomere length. May also regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q6PFX9|TNKS1_MOUSE Tankyrase-1 OS=Mus musculus GN=Tnks PE=1 SV=1

 Score = 76.6 bits (187), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 3/117 (2%)

Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGR--TALHMASANGHLGIVEYLIGRGVDINA 83
           LL A++  D+E V  L S    ++ +D +GR  T LH A+    + +VEYL+  G D++A
Sbjct: 647 LLEASKAGDLETVKQLCSP-QNVNCRDLEGRHSTPLHFAAGYNRVSVVEYLLHHGADVHA 705

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
            ++    PLH AC  GH EVA+ LV  GA+++V +  + TP+ EA ++GK +I   +
Sbjct: 706 KDKGGLVPLHNACSYGHYEVAELLVRHGASVNVADLWKFTPLHEAAAKGKYEICKLL 762

Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. Acts as an activator of the Wnt signaling pathway by mediating poly-ADP-ribosylation of AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex: poly-ADP-ribosylated target proteins are recognized by RNF146, which mediates their ubiquitination and subsequent degradation. Also mediates poly-ADP-ribosylation of BLZF1 and CASC3, followed by recruitment of RNF146 and subsequent ubiquitination. Mediates poly-ADP-ribosylation of TERF1, thereby contributing to the regulation of telomere length. May also regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
224105969	153	predicted protein [Populus trichocarpa]	0.922	0.934	0.741	2e-57
118483719	153	unknown [Populus trichocarpa]	0.922	0.934	0.734	1e-56
225436632	150	PREDICTED: GA-binding protein subunit be	0.916	0.946	0.732	1e-55
388505808	157	unknown [Lotus japonicus]	0.967	0.955	0.668	6e-54
255580135	156	ankyrin repeat-containing protein, putat	0.916	0.910	0.706	2e-53
449444875	157	PREDICTED: ankyrin repeat domain-contain	0.967	0.955	0.66	3e-52
351724747	157	uncharacterized protein LOC100306615 [Gl	0.916	0.904	0.683	2e-51
357463537	154	Ankyrin repeat domain-containing protein	0.948	0.954	0.662	4e-51
388500726	154	unknown [Medicago truncatula]	0.948	0.954	0.655	6e-50
326495658	149	predicted protein [Hordeum vulgare subsp	0.948	0.986	0.625	3e-48

>gi|224105969|ref|XP_002313998.1| predicted protein [Populus trichocarpa] gi|222850406|gb|EEE87953.1| predicted protein [Populus trichocarpa]

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 126/143 (88%)

Query: 13  QTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVE 72
           QT   ++PE +DALL AARYDD ED+ SLAS+GV LDSKDSQGRTALHMA+ANGHL IVE
Sbjct: 11  QTQVETTPEIVDALLEAARYDDFEDITSLASSGVSLDSKDSQGRTALHMAAANGHLDIVE 70

Query: 73  YLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRG 132
           YLI +GVD+NASNEEKNTPLH+ACLNGH EV KKL+L+GA++ +LNSHE+TP+DEA++RG
Sbjct: 71  YLINQGVDLNASNEEKNTPLHWACLNGHIEVVKKLILAGASLGILNSHERTPMDEAVTRG 130

Query: 133 KMDIIDAINTAVAQLELGGFTVS 155
           K+D+IDAIN AVAQ EL G TVS
Sbjct: 131 KLDVIDAINAAVAQQELSGVTVS 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483719|gb|ABK93753.1| unknown [Populus trichocarpa]

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/143 (73%), Positives = 125/143 (87%)

Query: 13  QTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVE 72
           QT   ++PE +DALL AARYDD ED+ SLAS+GV LDSKDSQGRTALHMA+ANGHL IVE
Sbjct: 11  QTQVETTPEIVDALLEAARYDDFEDITSLASSGVSLDSKDSQGRTALHMAAANGHLDIVE 70

Query: 73  YLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRG 132
           YLI +GVD+NASNEEKNTPLH+ACLNGH EV KKL+L+GA++ +LNSHE+TP+DEA++RG
Sbjct: 71  YLINQGVDLNASNEEKNTPLHWACLNGHIEVVKKLILAGASLGILNSHERTPMDEAVTRG 130

Query: 133 KMDIIDAINTAVAQLELGGFTVS 155
           K+D+I AIN AVAQ EL G TVS
Sbjct: 131 KLDVIGAINAAVAQQELSGVTVS 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436632|ref|XP_002280089.1| PREDICTED: GA-binding protein subunit beta-2 [Vitis vinifera] gi|296083850|emb|CBI24238.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/142 (73%), Positives = 124/142 (87%)

Query: 14  TTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEY 73
           + ET+S EN++ALL AARYDDI+DV  +ASAGV LDSKDSQGRTALHMA+ANGHL +VE+
Sbjct: 7   SAETASQENVEALLEAARYDDIDDVKIIASAGVSLDSKDSQGRTALHMAAANGHLDVVEF 66

Query: 74  LIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGK 133
           LI  GVD+NASN EKNTPLH+ACLNGH EV K L+L+GAN++ LNSHE+TP+DEA+SRGK
Sbjct: 67  LISSGVDLNASNVEKNTPLHWACLNGHIEVVKNLILAGANVTALNSHERTPMDEAVSRGK 126

Query: 134 MDIIDAINTAVAQLELGGFTVS 155
           MD+IDAIN AVAQ+EL G  VS
Sbjct: 127 MDVIDAINAAVAQVELTGIGVS 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505808|gb|AFK40970.1| unknown [Lotus japonicus]

 Score =  215 bits (547), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 101/151 (66%), Positives = 129/151 (85%), Gaps = 1/151 (0%)

Query: 5   ADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASA 64
           AD SI + Q    ++PEN++ALL AARYDD++DV+SLAS GVPLDSKD QGRTALHMA+A
Sbjct: 4   ADASI-KLQAPPETTPENVEALLEAARYDDMDDVVSLASNGVPLDSKDHQGRTALHMAAA 62

Query: 65  NGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTP 124
           NGH+ IVEYLI R VD+N++NEEKNTPLH+ACLNGH EV KKL+++GAN+ VLNSH++TP
Sbjct: 63  NGHIDIVEYLISRRVDLNSANEEKNTPLHWACLNGHIEVVKKLIMAGANVGVLNSHDRTP 122

Query: 125 IDEALSRGKMDIIDAINTAVAQLELGGFTVS 155
           +DEA++R K++++DAIN AVA +EL G  VS
Sbjct: 123 MDEAVTRSKLEVMDAINEAVAIVELRGALVS 153

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580135|ref|XP_002530899.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223529521|gb|EEF31475.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 101/143 (70%), Positives = 125/143 (87%), Gaps = 1/143 (0%)

Query: 10  NRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLG 69
           N+++  E +S E++DALL AARYDDI+D+ SLAS+G+ LDSKDS GRTALHMA+ANGHL 
Sbjct: 6   NQSEQLEATS-ESVDALLEAARYDDIDDIKSLASSGISLDSKDSFGRTALHMAAANGHLD 64

Query: 70  IVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEAL 129
           IVEYLI +GVD+NASNEEKNT LH+ACLNGH EV KKL+L+GA++S+LN HE+TP+DEA+
Sbjct: 65  IVEYLISQGVDLNASNEEKNTALHWACLNGHIEVVKKLILAGASLSLLNCHERTPVDEAV 124

Query: 130 SRGKMDIIDAINTAVAQLELGGF 152
           +R KMD+IDAIN AVAQLEL G 
Sbjct: 125 TREKMDVIDAINAAVAQLELAGV 147

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444875|ref|XP_004140199.1| PREDICTED: ankyrin repeat domain-containing protein 2-like [Cucumis sativus] gi|449482548|ref|XP_004156317.1| PREDICTED: ankyrin repeat domain-containing protein 2-like [Cucumis sativus]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/150 (66%), Positives = 124/150 (82%)

Query: 6   DPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASAN 65
           D + +  Q+T  ++  +I+ L+ AARY+D++DV  LASAGV LDS DS+ RTALHMA+AN
Sbjct: 4   DANQSEEQSTVETTMNDIEDLVDAARYNDLDDVKRLASAGVCLDSTDSESRTALHMAAAN 63

Query: 66  GHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPI 125
           GHL IVE+LI RGVD+NA N EKNTPLH+ACLNGH EV KKL+L+GAN+S+LNSHE+TP+
Sbjct: 64  GHLSIVEFLIDRGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSLLNSHEKTPV 123

Query: 126 DEALSRGKMDIIDAINTAVAQLELGGFTVS 155
           DEAL+RGKMD+IDAINT  AQ+EL G  VS
Sbjct: 124 DEALTRGKMDVIDAINTVAAQIELTGINVS 153

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724747|ref|NP_001237580.1| uncharacterized protein LOC100306615 [Glycine max] gi|255629083|gb|ACU14886.1| unknown [Glycine max]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 97/142 (68%), Positives = 120/142 (84%)

Query: 13  QTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVE 72
           Q    ++ ENI+ALL AARYDD++DV SL ++GVPLDSKD QGRTALHMA+ANGH+ IVE
Sbjct: 11  QARPETTSENIEALLDAARYDDMDDVKSLEASGVPLDSKDEQGRTALHMAAANGHIDIVE 70

Query: 73  YLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRG 132
           YLI RGVD+N+ NEEKNTPLH+ACLNGH E  KKL+++GAN+SVLNSHE+TP+DEA+S G
Sbjct: 71  YLISRGVDLNSPNEEKNTPLHWACLNGHVEAVKKLIMAGANVSVLNSHERTPMDEAVSGG 130

Query: 133 KMDIIDAINTAVAQLELGGFTV 154
           K +++DAIN AVA +EL G  V
Sbjct: 131 KPEVMDAINEAVALVELRGAMV 152

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463537|ref|XP_003602050.1| Ankyrin repeat domain-containing protein [Medicago truncatula] gi|357520347|ref|XP_003630462.1| Ankyrin repeat domain-containing protein [Medicago truncatula] gi|355491098|gb|AES72301.1| Ankyrin repeat domain-containing protein [Medicago truncatula] gi|355524484|gb|AET04938.1| Ankyrin repeat domain-containing protein [Medicago truncatula]

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 98/148 (66%), Positives = 125/148 (84%), Gaps = 1/148 (0%)

Query: 8   SINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGH 67
           +IN    TET + ENI+ALL AARYDD++DV+SL S GVPL+SKD QGRTALHMA+ANGH
Sbjct: 7   NINLQDPTETMT-ENIEALLEAARYDDMDDVVSLTSNGVPLNSKDDQGRTALHMAAANGH 65

Query: 68  LGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDE 127
           + IVEYLI +G D+N+ N EKNTPLH+ACLNGH EV KKL+++GAN+SVLNS+E+TP+DE
Sbjct: 66  VNIVEYLISKGADLNSENVEKNTPLHWACLNGHVEVVKKLIIAGANVSVLNSYERTPMDE 125

Query: 128 ALSRGKMDIIDAINTAVAQLELGGFTVS 155
           A++RGK++++DAIN A A +EL G  VS
Sbjct: 126 AVTRGKLEVMDAINEAEALVELRGALVS 153

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500726|gb|AFK38429.1| unknown [Medicago truncatula]

 Score =  202 bits (513), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 97/148 (65%), Positives = 124/148 (83%), Gaps = 1/148 (0%)

Query: 8   SINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGH 67
           +IN    TET + ENI+ALL AA YDD++DV+SL S GVPL+SKD QGRTALHMA+ANGH
Sbjct: 7   NINLQDPTETMT-ENIEALLEAAGYDDMDDVVSLTSNGVPLNSKDDQGRTALHMAAANGH 65

Query: 68  LGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDE 127
           + IVEYLI +G D+N+ N EKNTPLH+ACLNGH EV KKL+++GAN+SVLNS+E+TP+DE
Sbjct: 66  VNIVEYLISKGADLNSENVEKNTPLHWACLNGHVEVVKKLIIAGANVSVLNSYERTPMDE 125

Query: 128 ALSRGKMDIIDAINTAVAQLELGGFTVS 155
           A++RGK++++DAIN A A +EL G  VS
Sbjct: 126 AVTRGKLEVMDAINEAEALVELRGAPVS 153

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326495658|dbj|BAJ85925.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/147 (62%), Positives = 116/147 (78%)

Query: 9   INRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHL 68
           +   Q T  ++ E    L+ +ARYD++EDV++L SAGVPLDS DSQGRTALHMASANGHL
Sbjct: 3   VESAQPTPAATAEQAQDLIDSARYDELEDVVALFSAGVPLDSADSQGRTALHMASANGHL 62

Query: 69  GIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
            +VEYLI  G ++N++N EKNTPLH+ACLNGH EV K L+ +GA +S LNSHE+TP+DEA
Sbjct: 63  AVVEYLIQNGANVNSTNLEKNTPLHWACLNGHIEVIKALICAGAMVSALNSHEKTPMDEA 122

Query: 129 LSRGKMDIIDAINTAVAQLELGGFTVS 155
           ++ GKM++IDAI  AVAQ EL G TVS
Sbjct: 123 VTLGKMEVIDAIGAAVAQAELDGVTVS 149

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:505006600	144	AT5G12320 [Arabidopsis thalian	0.864	0.930	0.651	3.5e-43
POMBASE|SPBP16F5.05c	146	SPBP16F5.05c "ribosome biogene	0.741	0.787	0.385	1.8e-16
TAIR|locus:2137380	354	ACBP2 "AT4G27780" [Arabidopsis	0.716	0.313	0.351	2.4e-16
TAIR|locus:2178426	338	ACBP1 "acyl-CoA binding protei	0.716	0.328	0.342	3.5e-15
UNIPROTKB|F1NP98	422	ILK "Uncharacterized protein"	0.6	0.220	0.431	3.5e-15
ZFIN|ZDB-GENE-050208-136	418	gabpb2b "GA repeat binding pro	0.703	0.260	0.403	4.4e-15
DICTYBASE|DDB_G0287729	706	DDB_G0287729 "Palmitoyltransfe	0.703	0.154	0.381	4.8e-15
UNIPROTKB|F1MRL0	1428	DAPK1 "Uncharacterized protein	0.851	0.092	0.333	4.8e-15
RGD|620156	843	Ank2 "ankyrin 2, neuronal" [Ra	0.716	0.131	0.351	4.9e-15
UNIPROTKB|F1M5N3	3838	Ank2 "Protein Ank2" [Rattus no	0.793	0.032	0.346	5.6e-15

TAIR|locus:505006600 AT5G12320 [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 88/135 (65%), Positives = 112/135 (82%)

Query:    16 ETSS-PENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYL 74
             ET+   E +D LL AARY+DI+D+ +LAS G+ L S+DSQGRTALHMA+ANGH+ IVEYL
Sbjct:     4 ETNGVAEKVDDLLEAARYNDIDDLRTLASDGLSLHSRDSQGRTALHMAAANGHMTIVEYL 63

Query:    75 IGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKM 134
             I  GVDINA N+E N PLH+ACLNGH EV K+L+L+GA++S+LN +E+TP+DEA+   KM
Sbjct:    64 ISEGVDINALNDENNAPLHWACLNGHVEVVKRLILAGASLSLLNRYERTPMDEAIGAEKM 123

Query:   135 DIIDAINTAVAQLEL 149
             +IIDAINT VAQ+EL
Sbjct:   124 EIIDAINTTVAQMEL 138

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

POMBASE|SPBP16F5.05c SPBP16F5.05c "ribosome biogenesis protein Nop8 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 47/122 (38%), Positives = 73/122 (59%)

Query:    22 NIDALLAAARYDDIEDVISLASAGVP--LDSKDSQGRTALHMASANGHLGIVEYLI---G 76
             ++D L+ A R  D E+++       P  L  +D  G + LHMASANGH+ +V+ +I    
Sbjct:     2 DVDDLIYACRAAD-EELLDEIIEKCPQELSRRDENGNSGLHMASANGHIAVVQKIIPYLN 60

Query:    77 RGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
             + V INA NE  NT +H+A LNGH E+ K L+ +G +  + N +E++PI EA  R +  +
Sbjct:    61 KEV-INAQNESGNTAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSPIYEADIRNQQKV 119

Query:   137 ID 138
             +D
Sbjct:   120 MD 121

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0030688 "preribosome, small subunit precursor" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TAIR|locus:2137380 ACBP2 "AT4G27780" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 39/111 (35%), Positives = 66/111 (59%)

Query:    16 ETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLI 75
             E+ +   IDA+   AR  ++E+++    +G+P++++DS+GRT LH A   GHL I + L+
Sbjct:   227 ESENELKIDAIHGFAREGEVENLLKSIESGIPVNARDSEGRTPLHWAIDRGHLNIAKVLV 286

Query:    76 GRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPID 126
              +  D+NA + E  TPLHYA +     +A+ LV   AN +  +    +P+D
Sbjct:   287 DKNADVNAKDNEGQTPLHYAVVCDREAIAEFLVKQNANTAAKDEDGNSPLD 337

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA;TAS

GO:0009514 "glyoxysome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010288 "response to lead ion" evidence=IEP

GO:0032791 "lead ion binding" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2178426 ACBP1 "acyl-CoA binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 3.5e-15, P = 3.5e-15
 Identities = 38/111 (34%), Positives = 66/111 (59%)

Query:    16 ETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLI 75
             E+ +   IDA+ A AR  ++E+++     G+P++++DS+GRT LH A   GHL + E L+
Sbjct:   212 ESDNELKIDAIHAFAREGEVENLLKCIENGIPVNARDSEGRTPLHWAIDRGHLNVAEALV 271

Query:    76 GRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPID 126
              +  D+NA + E  T LHYA +     +A+ LV   A+ ++ +    +P+D
Sbjct:   272 DKNADVNAKDNEGQTSLHYAVVCEREALAEFLVKQKADTTIKDEDGNSPLD 322

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006869 "lipid transport" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0010288 "response to lead ion" evidence=IEP;IMP

GO:0032791 "lead ion binding" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0070300 "phosphatidic acid binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008289 "lipid binding" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010162 "seed dormancy process" evidence=IMP

GO:1900140 "regulation of seedling development" evidence=IMP

GO:0000062 "fatty-acyl-CoA binding" evidence=IDA

UNIPROTKB|F1NP98 ILK "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 198 (74.8 bits), Expect = 3.5e-15, P = 3.5e-15
 Identities = 41/95 (43%), Positives = 62/95 (65%)

Query:    34 DIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLH 93
             ++ D++ +  A + + ++     T LH+A+++GH  IV+ LI    DINA NE  NTPLH
Sbjct:    18 NVVDMLIMRGARINVMNRGDD--TPLHLAASHGHRDIVQKLIQFKADINAVNEHGNTPLH 75

Query:    94 YACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
             YAC  GH  VA+ LV +GA +S+ N + +TPID+A
Sbjct:    76 YACFWGHDTVAEDLVGNGALVSIANKYSETPIDKA 110

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IEA

GO:0045669 "positive regulation of osteoblast differentiation" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

ZFIN|ZDB-GENE-050208-136 gabpb2b "GA repeat binding protein, beta 2b" [Danio rerio (taxid:7955)]

 Score = 197 (74.4 bits), Expect = 4.4e-15, P = 4.4e-15
 Identities = 44/109 (40%), Positives = 62/109 (56%)

Query:    29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
             AA+Y        L  AGV  D++    RT LHMA+A GH  IVE L+  G DINA +  K
Sbjct:    45 AAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAAEGHSSIVELLVKSGADINAKDMLK 104

Query:    89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
              T LH+A  +GH  V + LV  GA+   L+  ++TP + ++ RG  D++
Sbjct:   105 MTALHWATEHGHRGVVELLVKYGADTHALSKFDKTPFNISVDRGNTDLM 153

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0287729 DDB_G0287729 "Palmitoyltransferase ZDHHC17" [Dictyostelium discoideum (taxid:44689)]

 Score = 201 (75.8 bits), Expect = 4.8e-15, P = 4.8e-15
 Identities = 42/110 (38%), Positives = 68/110 (61%)

Query:    23 IDALLAAARYDDIEDVIS-LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDI 81
             +++LL +  +D   DV   L   G+P+ SKD +G TALH AS +G+L ++  LI RG DI
Sbjct:   216 LNSLLLSTHHDRSLDVARYLLHKGLPVTSKDDEGHTALHWASFSGNLKLIRLLINRGADI 275

Query:    82 NASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSR 131
             N+ +    TP+H++   G+TE    L   GAN+++ ++  +TP + AL+R
Sbjct:   276 NSIDNLHRTPIHWSSFKGYTECTVALHEEGANLNLKDADNKTPYELALTR 325

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1MRL0 DAPK1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 205 (77.2 bits), Expect = 4.8e-15, P = 4.8e-15
 Identities = 44/132 (33%), Positives = 72/132 (54%)

Query:     9 INRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHL 68
             I R    +       +A+  A+R+  ++ +  L     PLD KD  G TALH+A+  GH 
Sbjct:   397 IKRGSRIDIQDKGGSNAIYWASRHGHVDTLKFLNENKCPLDVKDKSGETALHVAARYGHA 456

Query:    69 GIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
              +V+ L   G + N  ++E+ TPLH A  +G+  VAK L  +G N+++ N   +TP+  A
Sbjct:   457 DVVQLLCSFGSNPNFQDKEEETPLHCAAWHGYYSVAKALCEAGCNVNIKNREGETPLLTA 516

Query:   129 LSRGKMDIIDAI 140
              +RG  DI++ +
Sbjct:   517 SARGYQDIVECL 528

GO:2000310 "regulation of N-methyl-D-aspartate selective glutamate receptor activity" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

RGD|620156 Ank2 "ankyrin 2, neuronal" [Rattus norvegicus (taxid:10116)]

 Score = 202 (76.2 bits), Expect = 4.9e-15, P = 4.9e-15
 Identities = 39/111 (35%), Positives = 67/111 (60%)

Query:    27 LAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNE 86
             L AAR  +++ V+     G+ +++ +  G  ALH+A+  GH+G+V+ L+GRG  ++++ +
Sbjct:     1 LRAARAGNLDKVVEYLKGGIDINTCNQNGLNALHLAAKEGHVGLVQELLGRGSSVDSATK 60

Query:    87 EKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
             + NT LH A L G  EV K LV  GANI+  + +  TP+  A     +D++
Sbjct:    61 KGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVV 111

GO:0002027 "regulation of heart rate" evidence=ISO

GO:0003283 "atrial septum development" evidence=ISO

GO:0005200 "structural constituent of cytoskeleton" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005887 "integral to plasma membrane" evidence=ISO

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO

GO:0007399 "nervous system development" evidence=IEP

GO:0008104 "protein localization" evidence=ISO

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0010881 "regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion" evidence=ISO

GO:0010882 "regulation of cardiac muscle contraction by calcium ion signaling" evidence=ISO

GO:0014704 "intercalated disc" evidence=ISO

GO:0015459 "potassium channel regulator activity" evidence=ISO

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030018 "Z disc" evidence=ISO

GO:0030315 "T-tubule" evidence=ISO

GO:0030507 "spectrin binding" evidence=ISO

GO:0030674 "protein binding, bridging" evidence=ISO

GO:0030913 "paranodal junction assembly" evidence=IEP

GO:0031430 "M band" evidence=ISO

GO:0031672 "A band" evidence=ISO

GO:0033292 "T-tubule organization" evidence=ISO

GO:0033365 "protein localization to organelle" evidence=ISO

GO:0034394 "protein localization to cell surface" evidence=ISO

GO:0034613 "cellular protein localization" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043034 "costamere" evidence=ISO

GO:0043268 "positive regulation of potassium ion transport" evidence=ISO

GO:0044325 "ion channel binding" evidence=ISO

GO:0045121 "membrane raft" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0050821 "protein stabilization" evidence=ISO

GO:0051117 "ATPase binding" evidence=ISO

GO:0051279 "regulation of release of sequestered calcium ion into cytosol" evidence=ISO

GO:0051597 "response to methylmercury" evidence=IEP

GO:0051924 "regulation of calcium ion transport" evidence=ISO

GO:0051928 "positive regulation of calcium ion transport" evidence=ISO

GO:0055117 "regulation of cardiac muscle contraction" evidence=ISO

GO:0060048 "cardiac muscle contraction" evidence=ISO

GO:0060307 "regulation of ventricular cardiac muscle cell membrane repolarization" evidence=ISO

GO:0070972 "protein localization to endoplasmic reticulum" evidence=ISO

GO:0072659 "protein localization to plasma membrane" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

GO:0086004 "regulation of cardiac muscle cell contraction" evidence=ISO

GO:0086005 "regulation of ventricular cardiac muscle cell action potential" evidence=ISO

GO:0086014 "regulation of atrial cardiac muscle cell action potential" evidence=ISO

GO:0086015 "regulation of SA node cell action potential" evidence=ISO

GO:0086036 "regulation of cardiac muscle cell membrane potential" evidence=ISO

GO:0086066 "atrial cardiac muscle cell to AV node cell communication" evidence=ISO

GO:0086070 "SA node cell to atrial cardiac muscle cell communication" evidence=ISO

GO:0086091 "regulation of heart rate by cardiac conduction" evidence=ISO

GO:1901018 "positive regulation of potassium ion transmembrane transporter activity" evidence=ISO

GO:1901019 "regulation of calcium ion transmembrane transporter activity" evidence=ISO

GO:1901021 "positive regulation of calcium ion transmembrane transporter activity" evidence=ISO

GO:2001257 "regulation of cation channel activity" evidence=ISO

GO:2001259 "positive regulation of cation channel activity" evidence=ISO

UNIPROTKB|F1M5N3 Ank2 "Protein Ank2" [Rattus norvegicus (taxid:10116)]

 Score = 209 (78.6 bits), Expect = 5.6e-15, P = 5.6e-15
 Identities = 43/124 (34%), Positives = 72/124 (58%)

Query:    14 TTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEY 73
             TT   S  N  + L AAR  +++ V+     G+ +++ +  G  ALH+A+  GH+G+V+ 
Sbjct:     2 TTINQSDSNA-SFLRAARAGNLDKVVEYLKGGIDINTCNQNGLNALHLAAKEGHVGLVQE 60

Query:    74 LIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGK 133
             L+GRG  ++++ ++ NT LH A L G  EV K LV  GANI+  + +  TP+  A     
Sbjct:    61 LLGRGSSVDSATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENH 120

Query:   134 MDII 137
             +D++
Sbjct:   121 IDVV 124

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_IX0893	SubName- Full=Putative uncharacterized protein; (154 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0014034801	hypothetical protein (432 aa)			•						0.505
	gw1.IV.1389.1	hypothetical protein (265 aa)			•						0.484
	fgenesh4_pg.C_scaffold_13777000001	hypothetical protein (347 aa)			•						0.436

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	155
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-32
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-27
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-23
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-18
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-16
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-15
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-14
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-11
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-10
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-10
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	6e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-10
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-09
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	2e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-09
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	8e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-07
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-06
smart00248	30	smart00248, ANK, ankyrin repeats	3e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	6e-06
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	6e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-05
smart00248	30	smart00248, ANK, ankyrin repeats	4e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-05
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	7e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	9e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-04
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	5e-04
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	0.001
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  110 bits (278), Expect = 3e-32
 Identities = 43/116 (37%), Positives = 71/116 (61%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA    +E V  L   G  +++KD+ GRT LH+A+ NGHL IV+ L+ +G D+NA 
Sbjct: 10  PLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
           +++ NTPLH A  NG+ +V K L+  GA+++  +   +TP+  A   G ++++  +
Sbjct: 70  DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 97.5 bits (243), Expect = 6e-27
 Identities = 35/92 (38%), Positives = 58/92 (63%)

Query: 49  DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
           +++D  GRT LH+A++NGHL +V+ L+  G D+NA + +  TPLH A  NGH E+ K L+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 109 LSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
             GA+++  +    TP+  A   G +D++  +
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLL 92

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 86.2 bits (214), Expect = 5e-23
 Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 2/93 (2%)

Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           L  AA+  ++E V  L   G  ++  D+   TALH+A+ NG+L IV+ L+  G D+NA +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLN 118
           ++ NT LH A  NG+ E+ K L+  GA+I++ +
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 84.0 bits (208), Expect = 1e-21
 Identities = 34/84 (40%), Positives = 51/84 (60%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA+   +E V  L   G  ++++D  G T LH+A+ NG+L +V+ L+  G D+NA 
Sbjct: 43  PLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR 102

Query: 85  NEEKNTPLHYACLNGHTEVAKKLV 108
           +++  TPLH A  NGH EV K L+
Sbjct: 103 DKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.8 bits (182), Expect = 4e-18
 Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 59  LHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLN 118
           LH+A+ NG+L +V+ L+ +G D+N  +   +T LH A  NG+ E+ K L+  GA+++  +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 119 SHEQTPIDEALSRGKMDIIDAI 140
               T +  A   G ++I+  +
Sbjct: 59  KDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 71.8 bits (175), Expect = 6e-16
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 8/135 (5%)

Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLG-----IVEYLIGRGV- 79
           L +AA   D + V  L ++G  +++KD+ G T LH+A+ NG+       + + L+  G  
Sbjct: 77  LHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD 136

Query: 80  --DINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
               N  +E+ NTPLH+A LNG  ++ + L+ +GA+ +  NS+  T +D A   G+++++
Sbjct: 137 LDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELV 196

Query: 138 DAINTAVAQLELGGF 152
             +      L L  F
Sbjct: 197 KLLLDKGLHLSLLKF 211

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 66.5 bits (163), Expect = 1e-15
 Identities = 29/54 (53%), Positives = 40/54 (74%)

Query: 55  GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
           GRTALH A+ +G L +V+YL+ +GVDIN ++E+ NT LH A  NG+ EV K L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 67.8 bits (166), Expect = 5e-14
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 34  DIEDVI-SLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPL 92
           + ++ +  L S GVP++ KD  G T LH A  N +   V+YL+  G + N  N+  +TPL
Sbjct: 170 NAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPL 229

Query: 93  HYACLNGHTEVAKKLVLSGANISVLNSH 120
           H A LN + E+ K L+ +G +I  +   
Sbjct: 230 HIAILNNNKEIFKLLLNNGPSIKTIIET 257

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 62.7 bits (153), Expect = 8e-14
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 10/84 (11%)

Query: 2  EQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHM 61
          E+ AD ++  T T          AL  AAR  ++E V  L   G  +++KD  G TALH+
Sbjct: 18 EKGADVNLGDTDT----------ALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHL 67

Query: 62 ASANGHLGIVEYLIGRGVDINASN 85
          A+ NG+L IV+ L+  G DIN  +
Sbjct: 68 AARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 5/116 (4%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGH-LGIVEYLIGRGVDINA 83
             L  +     + V  L  AG  +++ +  G T LH+   N   L +++ LI  G D+NA
Sbjct: 53  LYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNA 112

Query: 84  SNEEKNTPLHYACLNG---HTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
            ++   TPLH   L+G   + +V + L+  GA+++ L+ +  TP+   L     ++
Sbjct: 113 KDKVGRTPLH-VYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANV 167

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 59.7 bits (144), Expect = 3e-11
 Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 11/131 (8%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLG-IVEYLIGRGVDINA 83
           +LL A R +D+E  + L  AG  ++S D    T LH AS    L  +V  L+ RG D+NA
Sbjct: 243 SLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNA 302

Query: 84  SNEEKNTPLHYACLNGH-TEVAKKLVLSGANISVLNSHEQTPIDEA--LSRGKMDIIDAI 140
            N +  TPL+    NG+ TE  + L++ GA+++  +    TP+ +A  L R K       
Sbjct: 303 KNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNK------- 355

Query: 141 NTAVAQLELGG 151
           +  +  LELG 
Sbjct: 356 DIVITLLELGA 366

Length = 682

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 57.5 bits (138), Expect = 1e-10
 Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 8/99 (8%)

Query: 47  PLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHT----- 101
            L ++D  GR  LH A++ G   IV+ L+  G D+NA + + +TPLH A LNG+      
Sbjct: 65  HLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNI 124

Query: 102 EVAKKLVLSGANISVL---NSHEQTPIDEALSRGKMDII 137
           EVAK L+ +GA++ V    +    TP+  A   G  DI+
Sbjct: 125 EVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIV 163

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 52.4 bits (126), Expect = 4e-10
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 41 LASAGVP-LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYA 95
          L   G   L++ D  G T LH+A+  G L +V++L+  GVD+N  + +  T L  A
Sbjct: 1  LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 40  SLASAGVPLDSKDSQGRTALHMASANGHL--GIVEYLIGRGVDINASNEEKNTPLHYACL 97
            L  AG    + D  G T LH  +        +V  L+  G+ INA N    TPLHYA +
Sbjct: 207 ELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAV 266

Query: 98  NGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDA 139
             +    ++L+  GA+I+ ++S   TP+   +       + A
Sbjct: 267 FNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRA 308

Length = 471

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 56.1 bits (135), Expect = 6e-10
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 2   EQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHM 61
           E+  DP +    T E          LAA+   D      L + G   + +D  GRT LH+
Sbjct: 71  EEVIDPVVAHMLTVELCQ-------LAAS--GDAVGARILLTGGADPNCRDYDGRTPLHI 121

Query: 62  ASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
           A ANGH+ +V  L+  G D    +++  TPL  A  NG  EV + L
Sbjct: 122 ACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 55.8 bits (135), Expect = 7e-10
 Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 26/141 (18%)

Query: 18  SSPENIDALLAAARYDDIE-DVIS-LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLI 75
            + +  + L      + I+  ++  L   GV +++K+                  V YL+
Sbjct: 137 KNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR-----------------VNYLL 179

Query: 76  GRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMD 135
             GV IN  +    TPLHYA  N + E  K L+  GAN +++N +  TP+  A+     +
Sbjct: 180 SYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKE 239

Query: 136 II-------DAINTAVAQLEL 149
           I         +I T +  L  
Sbjct: 240 IFKLLLNNGPSIKTIIETLLY 260

Length = 422

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 2/113 (1%)

Query: 38  VISLASAGVPLDSKDSQGRTALHMASANGH-LGIVEYLIGRGVDINASNEEKNTPLHYA- 95
           V  L   G  +++K+ +G T L++ + NG+    +  LI  G D+NA++    TPLH A 
Sbjct: 290 VPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQAS 349

Query: 96  CLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLE 148
            L+ + ++   L+  GAN++  +  ++TPI  A  R  + II+ +    A +E
Sbjct: 350 TLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE 402

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 50.4 bits (121), Expect = 2e-09
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 79  VDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
           +D+NA++   NTPLH A   G  E+ + L+  G ++++ +S   T +D A
Sbjct: 7   IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 20/144 (13%)

Query: 17  TSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALH--MASANGHLGIVEYL 74
            + P  + + +  AR  DI  V S    GV L  KDS GRT LH  +   N    I++ L
Sbjct: 279 KNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLL 338

Query: 75  IGRGVDINASNEEKNTPLH-YACL-------------NGHTEVAKKLVLSGANISVLNSH 120
              G D+N  +   NT LH Y  +             +   +V + L+  GA+I+ +N  
Sbjct: 339 HEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCL 398

Query: 121 EQTPIDEALSRGK----MDIIDAI 140
             TP+   +   +     DIID +
Sbjct: 399 GYTPLTSYICTAQNYMYYDIIDCL 422

Length = 764

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 6/126 (4%)

Query: 9   INRTQTTETSSPENIDALLAAARYDDIEDVIS--LASAGVPLDSKD-SQGRTALHMASAN 65
            NR +  +T     ID     ++ D IE  I+  L S G  ++ KD  +G TALH A+ N
Sbjct: 122 TNRYKNIQTIDLVYIDKK---SKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATEN 178

Query: 66  GHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPI 125
               + E L+  G ++N  ++  N+PLH+A  + +  +   L+ +GA+    +    TP+
Sbjct: 179 KDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPL 238

Query: 126 DEALSR 131
             ++  
Sbjct: 239 HISVGY 244

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.8 bits (117), Expect = 7e-09
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 25 ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLI 75
          AL  AA    +E V  L   GV ++  D  G TALH+A+ NG+L +++ L+
Sbjct: 4  ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 48  LDSKDSQGRTALHMA-------SANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH 100
           L +++       HM        +A+G       L+  G D N  + +  TPLH AC NGH
Sbjct: 68  LTTEEVIDPVVAHMLTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGH 127

Query: 101 TEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
            +V + L+  GA+ ++L+   +TP++ A   G  +++  +
Sbjct: 128 VQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 24  DALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA 83
           D L  AA+ +D+  +  L   G+ +DS+D QG TAL +A A  H+ +V  LI  G D++ 
Sbjct: 624 DLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK 683

Query: 84  SN 85
           +N
Sbjct: 684 AN 685

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 46.0 bits (110), Expect = 5e-08
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 54 QGRTALHMASANGHLGIVEYLIGRGVDINASNE 86
           G T LH+A+ NGHL +V+ L+  G D+NA ++
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 50.3 bits (120), Expect = 5e-08
 Identities = 24/97 (24%), Positives = 51/97 (52%)

Query: 36  EDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYA 95
           + + ++   G+ ++ KD++ +T LH A   G L  ++ L   G D+N  ++    P+H A
Sbjct: 105 DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIA 164

Query: 96  CLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRG 132
             +   ++ K L+  GA  +V +++ ++P+  A   G
Sbjct: 165 IKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYG 201

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 50.1 bits (119), Expect = 8e-08
 Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 4/104 (3%)

Query: 29  AARYDDIEDVISLASAGVPLDSKDSQGRTALHMA--SANGHLGIVEYLIGRGVDINASNE 86
           AA  +++  + +L   G  +++   +  TALH A    N ++  V+ LI RG ++N+ N+
Sbjct: 382 AAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMS-VKTLIDRGANVNSKNK 440

Query: 87  EKNTPLHYACLNG-HTEVAKKLVLSGANISVLNSHEQTPIDEAL 129
           + +TPLHYAC      +V + L+ +GA+++ +N   Q P+  AL
Sbjct: 441 DLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIAL 484

Length = 682

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 70  IVEYLIGRGVDINASNEEK-NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
           I + L+  G DIN  +  K NT LHYA  N    + + L+  GAN+++ +    +P+  A
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHA 208

Query: 129 LSRGKMDIIDAI 140
           +      I+  +
Sbjct: 209 VKHYNKPIVHIL 220

Length = 477

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 30/118 (25%), Positives = 51/118 (43%)

Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           L  A +  D+E +  L   G  ++ +D  G   +H+A  +    I++ L+ +G   N  +
Sbjct: 128 LHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD 187

Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTA 143
               +PLH A   G     K L+  G +I     +  TP+  A+   +  I   IN A
Sbjct: 188 NNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNA 245

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 7/115 (6%)

Query: 29  AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGH-----LGIVEYLIGRGVDINA 83
           A    +I+ V  L   G  ++S      T LH  S   +       IV+ L+  G ++NA
Sbjct: 42  AKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNA 101

Query: 84  SNEEKNTPLHYACLN--GHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
            +    TPL YA         + + L+ +GAN+++ NS  +  +   L   K+D+
Sbjct: 102 PDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDL 156

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 33  DDIEDVISLASAGVPLDSKDSQGRTALHMASAN--GHLGIVEYLIGRGVDINASNEEKNT 90
           D  E V  L   G  +++ D+ G T L  A +       IVEYL+  G ++N  N +   
Sbjct: 84  DVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGEN 143

Query: 91  PLHYA--CLNGHTEVAKKLVLSGANISVLNS 119
            LH          ++ K L+  G +I+  N 
Sbjct: 144 LLHLYLESNKIDLKILKLLIDKGVDINAKNR 174

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 17/109 (15%)

Query: 31  RYDDIEDVIS-LASAGVPLDSKDSQGRTALH--MASANGHLGIVEYLIGRGVDINASNEE 87
                 DVI  L  AG  +++KD  GRT LH  ++  N +  ++  L+ +G D+NA +  
Sbjct: 92  YNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLY 151

Query: 88  KNTPLHYACL----NGHTEVAKKLVLSGANI--------SVLNSHEQTP 124
             TPL    L    N + E+ + L+ +GA++        S+L+ H Q+ 
Sbjct: 152 GMTPLA--VLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSF 198

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 48.5 bits (115), Expect = 3e-07
 Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 6/113 (5%)

Query: 31  RYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNT 90
           R  DI  VI+L   G  ++++D   +T +H A+   ++ I+  L+  G DI A +++  T
Sbjct: 353 RNKDI--VITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGT 410

Query: 91  PLHYACL--NGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRG-KMDIIDAI 140
            LH+A    N +  V K L+  GAN++  N    TP+  A  +  K+D+I+ +
Sbjct: 411 ALHFALCGTNPYMSV-KTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEML 462

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.8 bits (104), Expect = 7e-07
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 89  NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            T LH A ++G  E+ K L+  G +I+  +    T +  A   G ++++
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVL 50

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 1/92 (1%)

Query: 13  QTTETSSPENIDA-LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIV 71
                    N+ + LL  A   +   +  L  A +  D  DS+GRT LH+A++ G+   V
Sbjct: 515 DNGGEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCV 574

Query: 72  EYLIGRGVDINASNEEKNTPLHYACLNGHTEV 103
             L+    +++  +   NT L  A    H ++
Sbjct: 575 LVLLKHACNVHIRDANGNTALWNAISAKHHKI 606

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.8 bits (99), Expect = 2e-06
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 89  NTPLHYACLNGHTEVAKKLVLSGANISVLN 118
           NTPLH A  NGH EV K L+ +GA+++  +
Sbjct: 3   NTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 41.4 bits (98), Expect = 3e-06
 Identities = 16/30 (53%), Positives = 23/30 (76%)

Query: 54 QGRTALHMASANGHLGIVEYLIGRGVDINA 83
           GRT LH+A+ NG+L +V+ L+ +G DINA
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.0 bits (106), Expect = 4e-06
 Identities = 26/83 (31%), Positives = 45/83 (54%)

Query: 54  QGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGAN 113
            G T LH+A+    L I++ LI RG D +  N +K +PLH A + G  +  + L+   A 
Sbjct: 101 DGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC 160

Query: 114 ISVLNSHEQTPIDEALSRGKMDI 136
           + + +    TP+  A+++G + I
Sbjct: 161 LDIEDCCGCTPLIIAMAKGDIAI 183

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 6/88 (6%)

Query: 45  GVPLDSKDSQGRTALHMASAN-GHLGIVEYLIGRGVDINASNEEKN-TPLHYACLNGHTE 102
           G   D++D  G T LH++        I++ L+  GVD+NA +     T LH +     +E
Sbjct: 224 GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSI---KSE 280

Query: 103 VAKKLVLS-GANISVLNSHEQTPIDEAL 129
              KL+L  GA+I+ LNS++ TP+  A+
Sbjct: 281 RKLKLLLEYGADINSLNSYKLTPLSSAV 308

Length = 477

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 40.7 bits (96), Expect = 6e-06
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 55 GRTALHMASANGHLGIVEYLIGRGVDINA 83
          G T LH+A+ NG+L +V+ L+  G DINA
Sbjct: 2  GNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 22/73 (30%), Positives = 41/73 (56%)

Query: 68  LGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDE 127
           L I E L+  G D+NA +    TP+HYA   G+ ++   L+  GA+++++   + + ++ 
Sbjct: 158 LLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLEC 217

Query: 128 ALSRGKMDIIDAI 140
           A+    +D I AI
Sbjct: 218 AVDSKNIDTIKAI 230

Length = 682

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 4   DADPSINRTQTTETSSPENIDAL-------LAAARYDDIEDVISLASAGVPLDSKDSQGR 56
                I R        P   D L       +A         V+ L  AG+ +++++  G+
Sbjct: 199 KPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQ 258

Query: 57  TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHT 101
           T LH A+   +      LI  G DINA + + NTPL     N + 
Sbjct: 259 TPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNG 303

Length = 471

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.3 bits (90), Expect = 4e-05
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 87  EKNTPLHYACLNGHTEVAKKLVLSGANISV 116
           +  TPLH A  NG+ EV K L+  GA+I+ 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 12/117 (10%)

Query: 21  ENIDALLAAARYD--------DIEDVISLASAGVPLDSKDSQGRTALHMASANGH---LG 69
           E++D ++ AA YD         +E+V  L +AG  ++ +   G+T LH+           
Sbjct: 5   ESVDIIMEAALYDYLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKD 64

Query: 70  IVEYLIGRGVDINASNEEKNTPLHYACLNGHTE-VAKKLVLSGANISVLNSHEQTPI 125
           IV  L+  G D+NA      TPLH    N  T  V K L+ +GA+++  +   +TP+
Sbjct: 65  IVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPL 121

Length = 471

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 52  DSQGRTALHMASANGHLGIVE---YLIGRGVDINASNE-EKNTPLHYACLNGHTEVAKKL 107
           +  G+  +H+ S        E    L+  G DIN       NTPLH A    + E+A  L
Sbjct: 52  NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWL 111

Query: 108 VLS-GANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQ 146
               G N+ +LN   +TP   A  R    +++ +    AQ
Sbjct: 112 CNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQ 151

Length = 154

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 41.0 bits (96), Expect = 9e-05
 Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 34/128 (26%)

Query: 27  LAAAR-YDDIEDVISLASAGVPLDSKDSQGRTALHMASANGH------------------ 67
           +AA++ Y+D   V+ L      +  +D+ G TAL  A +  H                  
Sbjct: 564 IAASKGYEDC--VLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHA 621

Query: 68  -------------LGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
                        L  ++ L+ +G+++++ + +  T L  A    H ++ + L+++GA++
Sbjct: 622 AGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADV 681

Query: 115 SVLNSHEQ 122
              N+ + 
Sbjct: 682 DKANTDDD 689

Length = 823

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 89  NTPLHYACLNGHTEVAKKLVLSGANI 114
           NTPLH A  NG+ E+ K L+  GA+I
Sbjct: 3   NTPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 36  EDVI-SLASAGVPLDSKDSQGRTALH--MASANGHLGIVEYLIGRGVDINASNEEKNTPL 92
             VI  L   G  +++ D  G T L   + S N ++ ++  LI  G D+ A ++   + L
Sbjct: 132 PKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLL 191

Query: 93  HYACLNGHT--EVAKKLVLSGANISVLNSHEQTP 124
           H+   +      + ++L+ +G + +  +    TP
Sbjct: 192 HHHLQSFKPRARIVRELIRAGCDPAATDMLGNTP 225

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 70  IVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEAL 129
           +++ ++  G+D+N  + E  T LHYA   G  E  K L   GA++++ + +   PI  A+
Sbjct: 106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAI 165

Query: 130 SRGKMDII 137
                DII
Sbjct: 166 KHNFFDII 173

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)

Query: 23  IDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDIN 82
           I  +  A ++ D E +  L   G   D K     + LH A   G +  VE L+  G   +
Sbjct: 36  ISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFAD 95

Query: 83  ASNEEK-NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIID 138
               +   TPLH A +    ++ K L+  GA+  + N+ + +P+  A+  G +  I+
Sbjct: 96  DVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152

Length = 413

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 19/132 (14%)

Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGH---LGIVEYLIGRGVDIN 82
           LL+    +++E ++ +   G      D  G T L +   + H   + I++ L+ +GVDIN
Sbjct: 116 LLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN 175

Query: 83  A-SNEEKNTPLH------YACLNGHTEVAKKLVLSGANISVLN-SHEQTPIDEALS---- 130
             +N+EK   LH         ++   ++ K  V +G  I+  N SH++  ++   S    
Sbjct: 176 THNNKEKYDTLHCYFKYNIDRID--ADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYD 233

Query: 131 --RGKMDIIDAI 140
             R K +I+D I
Sbjct: 234 NKRFKKNILDFI 245

Length = 489

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 71  VEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALS 130
           VE L+ RG   N ++++ N PLH A    +  +   L+  GA+ +  +   +TP+   LS
Sbjct: 55  VEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPL-YYLS 113

Query: 131 RGKMDIIDAINTAV 144
               ++I+ IN  V
Sbjct: 114 GTDDEVIERINLLV 127

Length = 446

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 36.1 bits (83), Expect = 0.004
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 59  LHMASANGHLGIVEYLI-GRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVL 117
           L M   +G +  +E +I  +G  IN S +E  TPL  A  +G  ++ +  +  GA+I+ +
Sbjct: 5   LRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHI 64

Query: 118 NSHEQTPIDEALSRGKMDII 137
           N+    P+  A+  G  DII
Sbjct: 65  NTKIPHPLLTAIKIGAHDII 84

Length = 434

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA02743	166	Viral ankyrin protein; Provisional	99.96
PHA02875	413	ankyrin repeat protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.95
PHA03100	480	ankyrin repeat protein; Provisional	99.95
PHA02741	169	hypothetical protein; Provisional	99.95
PHA03100	480	ankyrin repeat protein; Provisional	99.95
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.95
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
PHA02946	446	ankyin-like protein; Provisional	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
PHA02736	154	Viral ankyrin protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA03095	471	ankyrin-like protein; Provisional	99.94
PHA02798	489	ankyrin-like protein; Provisional	99.94
KOG0510	929	consensus Ankyrin repeat protein [General function	99.94
PHA02989	494	ankyrin repeat protein; Provisional	99.93
PHA02884	300	ankyrin repeat protein; Provisional	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.93
PHA02989	494	ankyrin repeat protein; Provisional	99.93
PHA02798	489	ankyrin-like protein; Provisional	99.93
PHA02946	446	ankyin-like protein; Provisional	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
PHA02876	682	ankyrin repeat protein; Provisional	99.92
PHA02917	661	ankyrin-like protein; Provisional	99.92
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.91
KOG0510	929	consensus Ankyrin repeat protein [General function	99.91
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
PHA02917	661	ankyrin-like protein; Provisional	99.91
PHA02730	672	ankyrin-like protein; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.9
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.9
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.89
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.88
PHA02730	672	ankyrin-like protein; Provisional	99.88
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.87
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.85
PHA02792	631	ankyrin-like protein; Provisional	99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.85
PHA02741	169	hypothetical protein; Provisional	99.85
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.84
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.84
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.84
PHA02792	631	ankyrin-like protein; Provisional	99.82
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.82
PHA02736	154	Viral ankyrin protein; Provisional	99.82
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.81
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.81
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.8
KOG0514	452	consensus Ankyrin repeat protein [General function	99.79
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.76
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.76
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.76
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.72
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.72
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.71
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.7
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.69
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.68
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.67
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.65
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.63
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.6
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.58
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.53
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.52
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.36
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.34
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.31
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.27
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.24
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.23
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.18
PF13606	30	Ank_3: Ankyrin repeat	99.16
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	99.13
KOG0522	560	consensus Ankyrin repeat protein [General function	99.09
PF13606	30	Ank_3: Ankyrin repeat	99.09
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.05
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.03
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.03
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.0
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.87
KOG0522	560	consensus Ankyrin repeat protein [General function	98.86
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.85
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.83
KOG0511	516	consensus Ankyrin repeat protein [General function	98.79
KOG2384	223	consensus Major histocompatibility complex protein	98.71
KOG0511	516	consensus Ankyrin repeat protein [General function	98.68
KOG2384	223	consensus Major histocompatibility complex protein	98.56
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.52
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.49
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.32
KOG2505	591	consensus Ankyrin repeat protein [General function	97.89
KOG2505	591	consensus Ankyrin repeat protein [General function	97.78
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.68
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.58
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	97.4
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.01
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.42
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.53
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.69
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	90.88

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.5e-34  Score=172.93  Aligned_cols=139  Identities=26%  Similarity=0.362  Sum_probs=122.8

Q ss_pred             CCccCCCcccHHHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCH
Q 031662           13 QTTETSSPENIDALLAAARYDDIEDVISLASA-GVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTP   91 (155)
Q Consensus        13 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~   91 (155)
                      ..++..+..||||||+|+..|+.++|+.|+.+ ++++|.....|.|+||||+..+..++.++|+++|+.++.+|..|.||
T Consensus        63 v~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtp  142 (226)
T KOG4412|consen   63 VKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTP  142 (226)
T ss_pred             CCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCch
Confidence            34455678899999999999999999999988 88999888899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           92 LHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        92 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      ||-|+.-|..+++++|+..|+.+|..|..|+||||.|.-.|+.++..+|+++|+++++.+
T Consensus       143 lHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~ed  202 (226)
T KOG4412|consen  143 LHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDRED  202 (226)
T ss_pred             hHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeecc
Confidence            999999999999999999999999999999999999988889999999999998887655

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.1e-33  Score=170.17  Aligned_cols=132  Identities=34%  Similarity=0.478  Sum_probs=125.9

Q ss_pred             cccHHHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHh
Q 031662           20 PENIDALLAAARYDDIEDVISLAS-AGVPLDSKDSQGRTALHMASANGHLGIVEYLIGR-GVDINASNEEKNTPLHYACL   97 (155)
Q Consensus        20 ~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~t~l~~a~~   97 (155)
                      .++.+|||+||..|+.+++.+|++ .+..+|.+|..||||||.|+..|+.++++-|+.+ |+++|..+..|.|+||+|+-
T Consensus        36 qD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAag  115 (226)
T KOG4412|consen   36 QDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAG  115 (226)
T ss_pred             ccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhc
Confidence            388999999999999999999995 4678888999999999999999999999999998 99999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           98 NGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        98 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      .|+.+++++|+++|+.++.+|..|+||||-|+..|..+++++|+..|+.++.++
T Consensus       116 K~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qD  169 (226)
T KOG4412|consen  116 KGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQD  169 (226)
T ss_pred             CChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCccc
Confidence            999999999999999999999999999999999999999999999999988654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.3e-29  Score=170.62  Aligned_cols=138  Identities=16%  Similarity=0.117  Sum_probs=85.9

Q ss_pred             CCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCc-cHHHHHHhCCCHHHHHHHHhcCCCCCCCC-CCCCC
Q 031662           13 QTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGR-TALHMASANGHLGIVEYLIGRGVDINASN-EEKNT   90 (155)
Q Consensus        13 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~-~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t   90 (155)
                      .+....+..|.||||+|+..|+.+++++|++.|++++.++..|+ ||||+|+..++.+++++|++++...  .+ ..|.|
T Consensus        85 advn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~T  162 (284)
T PHA02791         85 MDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLS  162 (284)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCcc
Confidence            33444455566666666666666666666666666555555543 5666666666666666666554322  12 23567


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCH-HHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           91 PLHYACLNGHTEVAKKLVLSGANISVLNSHEQTP-IDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        91 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~-l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      |||+|+..|+.+++++|+++|++++.++..|.|| ||+|+..|+.+++++|+++|++++.+++
T Consensus       163 pLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~  225 (284)
T PHA02791        163 CIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL  225 (284)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc
Confidence            7777777777777777777777777777666665 7777777777777777777777765543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=1.9e-29  Score=178.64  Aligned_cols=140  Identities=27%  Similarity=0.370  Sum_probs=132.9

Q ss_pred             CCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC-CccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCC
Q 031662           12 TQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQ-GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNT   90 (155)
Q Consensus        12 ~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t   90 (155)
                      +..++.+|..|.++||+|+.+++++++++|+++|+++|...+. +.||||+|+++|+..+++.|+++|++++.+|.+|.+
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~  147 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLT  147 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCc
Confidence            6777888889999999999999999999999999999998854 899999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           91 PLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        91 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      |+|.|++.++...+-+|+.++++++.+|.+|+|||++|+.+|+...+..|+..|+.+...+
T Consensus       148 ~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d  208 (600)
T KOG0509|consen  148 PLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTD  208 (600)
T ss_pred             HHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccc
Confidence            9999999999999999999999999999999999999999999888999999999887665

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2e-28  Score=174.17  Aligned_cols=131  Identities=22%  Similarity=0.271  Sum_probs=100.3

Q ss_pred             CcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Q 031662           19 SPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN   98 (155)
Q Consensus        19 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~   98 (155)
                      +..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..
T Consensus        99 ~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~  178 (413)
T PHA02875         99 YKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAK  178 (413)
T ss_pred             cCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc
Confidence            34567777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CcHHHHHHHHHcCCCCcccCCCCC-CHHHHHHHCCCHHHHHHHHHHHhhccc
Q 031662           99 GHTEVAKKLVLSGANISVLNSHEQ-TPIDEALSRGKMDIIDAINTAVAQLEL  149 (155)
Q Consensus        99 ~~~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a~~~~~~~~~~~L~~~g~~~~~  149 (155)
                      |+.+++++|++.|++++..+..|. ||+++|+..++.+++++|+++|++++.
T Consensus       179 g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        179 GDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             CCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch
Confidence            777777777777777777766664 667777777777777777777777764

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.8e-28  Score=165.20  Aligned_cols=128  Identities=16%  Similarity=0.158  Sum_probs=103.4

Q ss_pred             cHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC-CCHHHHHHhcCc
Q 031662           22 NIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK-NTPLHYACLNGH  100 (155)
Q Consensus        22 ~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~t~l~~a~~~~~  100 (155)
                      +.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.++..| .||||+|+..|+
T Consensus        61 ~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~  140 (284)
T PHA02791         61 NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND  140 (284)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCC
Confidence            4678888888888888888888888888888888888888888888888888888888888777776 478888888888


Q ss_pred             HHHHHHHHHcCCCCcccC-CCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662          101 TEVAKKLVLSGANISVLN-SHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus       101 ~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      .+++++|++++.+..  + ..|.||||+|+..|+.+++++|+++|++++..+
T Consensus       141 ~eivk~LL~~~~~~~--d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d  190 (284)
T PHA02791        141 VSIVSYFLSEIPSTF--DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNN  190 (284)
T ss_pred             HHHHHHHHhcCCccc--ccccCccHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            888888888765432  2 247889999999999999999999888877654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.96  E-value=3.5e-28  Score=152.97  Aligned_cols=141  Identities=23%  Similarity=0.246  Sum_probs=124.7

Q ss_pred             CCccCCCcccHHHHHHHHHhCCH----HHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHH---HHHHHHhcCCCCCCCC
Q 031662           13 QTTETSSPENIDALLAAARYDDI----EDVISLASAGVPLDSKDSQGRTALHMASANGHLG---IVEYLIGRGVDINASN   85 (155)
Q Consensus        13 ~~~~~~~~~~~~~l~~A~~~~~~----~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~ll~~~~~~~~~~   85 (155)
                      .++...+..+.++||.|++.|++    ++++++++.+..++..|..|+||||+|+..++.+   ++++|++.|++++.++
T Consensus        11 ~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d   90 (166)
T PHA02743         11 LGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARE   90 (166)
T ss_pred             hHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCC
Confidence            33434456677889999999998    5666778889889989999999999999998754   4899999999999998


Q ss_pred             -CCCCCHHHHHHhcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCCc
Q 031662           86 -EEKNTPLHYACLNGHTEVAKKLVL-SGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGFT  153 (155)
Q Consensus        86 -~~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~  153 (155)
                       ..|.||||+|+..++.+++++|++ .|++++.++..|+|||++|+..++.+++++|+++|++++.++-.
T Consensus        91 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  160 (166)
T PHA02743         91 LGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSI  160 (166)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccC
Confidence             589999999999999999999995 79999999999999999999999999999999999999876643

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.96  E-value=5.3e-28  Score=171.99  Aligned_cols=132  Identities=27%  Similarity=0.361  Sum_probs=106.6

Q ss_pred             cccHHHHHHHHHhCCHHHHHHHHHcCCCCC-CCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Q 031662           20 PENIDALLAAARYDDIEDVISLASAGVPLD-SKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN   98 (155)
Q Consensus        20 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~   98 (155)
                      ..+.+|||.|++.|+.+++++|++.+...+ ..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..
T Consensus        66 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~  145 (413)
T PHA02875         66 PDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMM  145 (413)
T ss_pred             CCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Confidence            334455555555555555555555554332 2345688999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           99 GHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        99 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      |+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+
T Consensus       146 ~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~  198 (413)
T PHA02875        146 GDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFG  198 (413)
T ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999887654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=4e-29  Score=176.98  Aligned_cols=144  Identities=28%  Similarity=0.391  Sum_probs=130.8

Q ss_pred             CCCCCcccccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCC
Q 031662            2 EQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDI   81 (155)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~   81 (155)
                      ++||+.+.-.|       ..+.||||+|+++|++.++.+|+++|++++.+|..|.+++|.|+.+++..++-+++.+++++
T Consensus        99 ~~gadvn~~gG-------~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~  171 (600)
T KOG0509|consen   99 SHGADVNAIGG-------VLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADI  171 (600)
T ss_pred             HcCCCccccCC-------CCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccC
Confidence            34555554444       46679999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           82 NASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLN-SHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        82 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      +.+|..|+|||+||+.+|....+..|++.|+.+...| ..|.||||+|+..|+..++.+|++.|++.+..+-
T Consensus       172 d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~  243 (600)
T KOG0509|consen  172 DLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNT  243 (600)
T ss_pred             CCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCccccccc
Confidence            9999999999999999999988999999999999988 9999999999999999999988888888876553

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=8.9e-28  Score=156.26  Aligned_cols=137  Identities=18%  Similarity=0.178  Sum_probs=122.1

Q ss_pred             cCCCcccHHHHHHHHHhC--CHHHHHHHHHcCCCCCCCC-CCCccHHHHHHhC---CCHHHHHHHHhcCCCCCCCCCCCC
Q 031662           16 ETSSPENIDALLAAARYD--DIEDVISLASAGVPLDSKD-SQGRTALHMASAN---GHLGIVEYLIGRGVDINASNEEKN   89 (155)
Q Consensus        16 ~~~~~~~~~~l~~A~~~~--~~~~v~~ll~~~~~~~~~~-~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~   89 (155)
                      ...+..|.||||.|+..+  +.+++++|+++|++++.++ ..|.||||+|+..   ++.+++++|+++|++++.+|..|.
T Consensus        45 n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~  124 (209)
T PHA02859         45 NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGK  124 (209)
T ss_pred             hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCC
Confidence            345678999999999854  8999999999999999987 4799999998764   478999999999999999999999


Q ss_pred             CHHHHHHh--cCcHHHHHHHHHcCCCCcccCCCCCCHHHH-HHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           90 TPLHYACL--NGHTEVAKKLVLSGANISVLNSHEQTPIDE-ALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        90 t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~-a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      ||||+|+.  .++.+++++|++.|++++.+|..|.||||. ++..++.+++++|+++|++++..+.
T Consensus       125 TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~  190 (209)
T PHA02859        125 NLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNK  190 (209)
T ss_pred             CHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Confidence            99999876  468999999999999999999999999995 5678899999999999999986653

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=5.2e-28  Score=174.71  Aligned_cols=141  Identities=18%  Similarity=0.153  Sum_probs=129.2

Q ss_pred             ccCCCccCCCcc-cHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC
Q 031662           10 NRTQTTETSSPE-NIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK   88 (155)
Q Consensus        10 ~~~~~~~~~~~~-~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~   88 (155)
                      +.+.++...+.. |.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|++++.+|..|
T Consensus       155 ~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g  234 (477)
T PHA02878        155 SYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCG  234 (477)
T ss_pred             HcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCC
Confidence            345555666666 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHhc-CcHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           89 NTPLHYACLN-GHTEVAKKLVLSGANISVLNS-HEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        89 ~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      .||||+|+.. ++.+++++|+++|++++.++. .|.||||+|  .++.+++++|+++|++++..+.
T Consensus       235 ~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~  298 (477)
T PHA02878        235 NTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNS  298 (477)
T ss_pred             CCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCC
Confidence            9999999975 789999999999999999875 799999999  5789999999999999987654

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.8e-27  Score=169.16  Aligned_cols=142  Identities=23%  Similarity=0.322  Sum_probs=124.2

Q ss_pred             cCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCC
Q 031662           11 RTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNT   90 (155)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t   90 (155)
                      .+.+....+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.|
T Consensus       113 ~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~t  192 (434)
T PHA02874        113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGES  192 (434)
T ss_pred             CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCC
Confidence            44556667788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCC-------------------------------cccCCCCCCHHHHHHHCC-CHHHHH
Q 031662           91 PLHYACLNGHTEVAKKLVLSGANI-------------------------------SVLNSHEQTPIDEALSRG-KMDIID  138 (155)
Q Consensus        91 ~l~~a~~~~~~~~~~~Ll~~~~~~-------------------------------~~~~~~~~t~l~~a~~~~-~~~~~~  138 (155)
                      |||+|+..|+.+++++|+++|+++                               +.++..|+||||+|+..+ +.++++
T Consensus       193 pL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~  272 (434)
T PHA02874        193 PLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIID  272 (434)
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHH
Confidence            999999999999999999987654                               455667778888888765 688999


Q ss_pred             HHHHHHhhcccCCC
Q 031662          139 AINTAVAQLELGGF  152 (155)
Q Consensus       139 ~L~~~g~~~~~~~~  152 (155)
                      +|+++|++++..+.
T Consensus       273 ~Ll~~gad~n~~d~  286 (434)
T PHA02874        273 ILLYHKADISIKDN  286 (434)
T ss_pred             HHHHCcCCCCCCCC
Confidence            99999998876653

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.4e-27  Score=169.54  Aligned_cols=133  Identities=23%  Similarity=0.316  Sum_probs=79.5

Q ss_pred             CCCcccHHHHHHHHHhCCHHHHHHHHHcCC-----------------------CCCCCCCCCccHHHHHHhCCCHHHHHH
Q 031662           17 TSSPENIDALLAAARYDDIEDVISLASAGV-----------------------PLDSKDSQGRTALHMASANGHLGIVEY   73 (155)
Q Consensus        17 ~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~-----------------------~~~~~~~~~~~~l~~a~~~~~~~~~~~   73 (155)
                      ..+..+.+||+.|++.|+.+++++|++.|.                       +++.++..|.||||+|+..++.+++++
T Consensus        63 ~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~  142 (434)
T PHA02874         63 HINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKM  142 (434)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHH
Confidence            334445555555555555555555554432                       233344556666666666666666666


Q ss_pred             HHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhccc
Q 031662           74 LIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLEL  149 (155)
Q Consensus        74 ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~  149 (155)
                      |+++|++++.++..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus       143 Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~  218 (434)
T PHA02874        143 LFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMN  218 (434)
T ss_pred             HHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcC
Confidence            6666666666666666666666666666666666666666666666666666666666666666666666665543

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.2e-27  Score=171.47  Aligned_cols=115  Identities=24%  Similarity=0.359  Sum_probs=107.5

Q ss_pred             HHHHHHHcCCCCCCCCCC-CccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCc
Q 031662           37 DVISLASAGVPLDSKDSQ-GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANIS  115 (155)
Q Consensus        37 ~v~~ll~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~  115 (155)
                      ++++|++.|++++..+.. |.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.+++++|++.|++++
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in  228 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD  228 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            666677778888888888 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCHHHHHHHC-CCHHHHHHHHHHHhhcccCC
Q 031662          116 VLNSHEQTPIDEALSR-GKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus       116 ~~~~~~~t~l~~a~~~-~~~~~~~~L~~~g~~~~~~~  151 (155)
                      .++..|.||||+|+.. ++.+++++|+++|++++..+
T Consensus       229 ~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~  265 (477)
T PHA02878        229 ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS  265 (477)
T ss_pred             CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccC
Confidence            9999999999999975 78999999999999998654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.1e-27  Score=171.72  Aligned_cols=139  Identities=24%  Similarity=0.371  Sum_probs=83.3

Q ss_pred             CCccCCCcccHHHHHHHHHhC--CHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC--
Q 031662           13 QTTETSSPENIDALLAAARYD--DIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK--   88 (155)
Q Consensus        13 ~~~~~~~~~~~~~l~~A~~~~--~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~--   88 (155)
                      .+....+..|.||||.|+..+  +.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++..+..+  
T Consensus       132 ~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  211 (480)
T PHA03100        132 ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLL  211 (480)
T ss_pred             CCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCc
Confidence            333444555566666666666  5666666666666666555556666666666666666666665555555555555  


Q ss_pred             ----CCHHHHHHhcCc--HHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           89 ----NTPLHYACLNGH--TEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        89 ----~t~l~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                          .||+|+|+..++  .+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus       212 ~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d  280 (480)
T PHA03100        212 FTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVN  280 (480)
T ss_pred             HHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence                555555555555  566666666666666666666666666666666666666666666655443

>PHA02741 hypothetical protein; Provisional

Probab=99.95  E-value=6.6e-27  Score=147.71  Aligned_cols=132  Identities=23%  Similarity=0.381  Sum_probs=120.5

Q ss_pred             cCCCcccHHHHHHHHHhCCHHHHHHHHH------cCCCCCCCCCCCccHHHHHHhCCC----HHHHHHHHhcCCCCCCCC
Q 031662           16 ETSSPENIDALLAAARYDDIEDVISLAS------AGVPLDSKDSQGRTALHMASANGH----LGIVEYLIGRGVDINASN   85 (155)
Q Consensus        16 ~~~~~~~~~~l~~A~~~~~~~~v~~ll~------~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~   85 (155)
                      ...+..|.|+||+|++.|+.+++++++.      .+.+++.++..|.||||+|+..++    .+++++|++.|++++.++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            3456789999999999999999999854      257788899999999999999998    588999999999999998


Q ss_pred             C-CCCCHHHHHHhcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhc
Q 031662           86 E-EKNTPLHYACLNGHTEVAKKLVL-SGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQL  147 (155)
Q Consensus        86 ~-~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~  147 (155)
                      . .|.||||+|+..++.+++++|++ .|++++..+..|+|||++|+..++.+++++|+++++..
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            5 89999999999999999999997 59999999999999999999999999999999998664

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.1e-26  Score=167.97  Aligned_cols=141  Identities=26%  Similarity=0.335  Sum_probs=124.6

Q ss_pred             cCCCccCCCcccHHHHHH-----HHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHH--hCCCHHHHHHHHhcCCCCCC
Q 031662           11 RTQTTETSSPENIDALLA-----AARYDDIEDVISLASAGVPLDSKDSQGRTALHMAS--ANGHLGIVEYLIGRGVDINA   83 (155)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~-----A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~ll~~~~~~~~   83 (155)
                      .|.++...+..+.+|||.     |+..++.+++++|++.|++++..+..|.||||+|+  ..++.+++++|+++|++++.
T Consensus        57 ~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~  136 (480)
T PHA03100         57 NGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNI  136 (480)
T ss_pred             cCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCc
Confidence            444455556677889999     99999999999999999999888888999999999  88999999999999999999


Q ss_pred             CCCCCCCHHHHHHhcC--cHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           84 SNEEKNTPLHYACLNG--HTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        84 ~~~~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      .+..|.||||+|+..+  +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+
T Consensus       137 ~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~  206 (480)
T PHA03100        137 KNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGD  206 (480)
T ss_pred             cCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCC
Confidence            9999999999999999  8999999999999999988899999999999999999999999998887654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=7.9e-27  Score=172.85  Aligned_cols=142  Identities=18%  Similarity=0.185  Sum_probs=102.2

Q ss_pred             ccCCCccCCCcccHHHHHHHHHhCC--HHHHHHHHHcCCCCCCCCCCCccHHHHH-------------------------
Q 031662           10 NRTQTTETSSPENIDALLAAARYDD--IEDVISLASAGVPLDSKDSQGRTALHMA-------------------------   62 (155)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~A~~~~~--~~~v~~ll~~~~~~~~~~~~~~~~l~~a-------------------------   62 (155)
                      +.|.+++..+..|.||||+|++.|+  .+++++|++.|++++.++..|.||||+|                         
T Consensus       200 e~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~  279 (764)
T PHA02716        200 NNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVK  279 (764)
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccc
Confidence            3455566666777778888877774  4777778877777777777777777754                         


Q ss_pred             ------------HhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh--cCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Q 031662           63 ------------SANGHLGIVEYLIGRGVDINASNEEKNTPLHYACL--NGHTEVAKKLVLSGANISVLNSHEQTPIDEA  128 (155)
Q Consensus        63 ------------~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  128 (155)
                                  +..++.+++++|++.|++++.+|..|+||||+|+.  .++.+++++|++.|++++.+|..|+||||+|
T Consensus       280 ~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A  359 (764)
T PHA02716        280 NIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTY  359 (764)
T ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHH
Confidence                        23456677777777777777777777888877653  3467777877777877777777778888776


Q ss_pred             HH--------------CCCHHHHHHHHHHHhhcccCC
Q 031662          129 LS--------------RGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus       129 ~~--------------~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      +.              .++.+++++|+++|++++..+
T Consensus       360 ~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn  396 (764)
T PHA02716        360 LSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVN  396 (764)
T ss_pred             HHhhhhhccccccccccChHHHHHHHHHCCCCCCCcC
Confidence            54              256778888888877776554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.95  E-value=9.3e-27  Score=176.91  Aligned_cols=137  Identities=18%  Similarity=0.182  Sum_probs=98.9

Q ss_pred             CCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q 031662           13 QTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPL   92 (155)
Q Consensus        13 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l   92 (155)
                      .+.+..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.+...+.  ..+.++|
T Consensus       549 ~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L  626 (823)
T PLN03192        549 LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLL  626 (823)
T ss_pred             CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHH
Confidence            33444455566666666666666666666666666666666666666666666666666666655443332  2344566


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           93 HYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        93 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus       627 ~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~  685 (823)
T PLN03192        627 CTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKAN  685 (823)
T ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCC
Confidence            67778888888889999999999999999999999999999999999999999998765

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=2.4e-27  Score=163.40  Aligned_cols=135  Identities=27%  Similarity=0.450  Sum_probs=92.0

Q ss_pred             CCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Q 031662           18 SSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACL   97 (155)
Q Consensus        18 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~   97 (155)
                      ..-.|..||-.|+..|++++|+.|+.+|+++|.......|||..||.-|+.+++++|+++|++++..|+.|.|.|++||.
T Consensus        80 e~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~y  159 (615)
T KOG0508|consen   80 ETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACY  159 (615)
T ss_pred             cccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeec
Confidence            34455566666666677777777777766666666666667777777777777777777677776667777777777777


Q ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           98 NGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        98 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      .|+.+++++|++.|++++.++..|.|+||.+++.|+.+++++|+.+|+.++..++
T Consensus       160 kGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~  214 (615)
T KOG0508|consen  160 KGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGH  214 (615)
T ss_pred             cCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCC
Confidence            7777777777777777776666777777777777777777777776666665554

>PHA02946 ankyin-like protein; Provisional

Probab=99.95  E-value=1.8e-26  Score=164.85  Aligned_cols=141  Identities=21%  Similarity=0.246  Sum_probs=107.3

Q ss_pred             cccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCC--CHHHHHHHHhcCCCCCC-CC
Q 031662            9 INRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANG--HLGIVEYLIGRGVDINA-SN   85 (155)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~-~~   85 (155)
                      ++.+.+++..+..|.||||+|++.|+.+++++|+++|++++.+|..|.||||+|+..+  ..+++++|+++|++++. .+
T Consensus        59 l~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d  138 (446)
T PHA02946         59 LHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVD  138 (446)
T ss_pred             HHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccC
Confidence            3566677778889999999999999999999999999999999999999999998765  37888889988888874 56


Q ss_pred             CCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCC--CHHHHHHHHHHHhhcccC
Q 031662           86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRG--KMDIIDAINTAVAQLELG  150 (155)
Q Consensus        86 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~L~~~g~~~~~~  150 (155)
                      ..|.|||+ |+..++.+++++|++.|++++..|..|+||||+|+..+  +.+++++|+++|++++..
T Consensus       139 ~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~  204 (446)
T PHA02946        139 EEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKP  204 (446)
T ss_pred             CCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCccc
Confidence            77777775 44456666666666666666666666666666655433  346666666666666543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.94  E-value=5.4e-26  Score=164.06  Aligned_cols=141  Identities=23%  Similarity=0.293  Sum_probs=127.9

Q ss_pred             ccCCCccCCCcccHHHHHHHHHhC---CHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCC-CHHHHHHHHhcCCCCCCCC
Q 031662           10 NRTQTTETSSPENIDALLAAARYD---DIEDVISLASAGVPLDSKDSQGRTALHMASANG-HLGIVEYLIGRGVDINASN   85 (155)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~A~~~~---~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~ll~~~~~~~~~~   85 (155)
                      +.+.++...+..|.||||.|+..+   +.+++++|++.|++++.++..|.||||+|+..+ +.+++++|+++|++++.++
T Consensus        35 ~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~  114 (471)
T PHA03095         35 AAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKD  114 (471)
T ss_pred             HcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCC
Confidence            455666667778999999999998   999999999999999999999999999999999 5999999999999999999


Q ss_pred             CCCCCHHHHHH--hcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCC--CHHHHHHHHHHHhhcccC
Q 031662           86 EEKNTPLHYAC--LNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRG--KMDIIDAINTAVAQLELG  150 (155)
Q Consensus        86 ~~~~t~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~L~~~g~~~~~~  150 (155)
                      ..|.||||+|+  ..++.+++++|+++|++++.++..|.||||+|+..+  +.+++++|+++|+++...
T Consensus       115 ~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~  183 (471)
T PHA03095        115 KVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV  183 (471)
T ss_pred             CCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCccc
Confidence            99999999999  556889999999999999999999999999988765  689999999999888654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.94  E-value=4e-26  Score=169.16  Aligned_cols=140  Identities=18%  Similarity=0.176  Sum_probs=123.6

Q ss_pred             CCccCC-CcccHHHHHHHHH--hCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCC--HHHHHHHHhcCCCCCCCCCC
Q 031662           13 QTTETS-SPENIDALLAAAR--YDDIEDVISLASAGVPLDSKDSQGRTALHMASANGH--LGIVEYLIGRGVDINASNEE   87 (155)
Q Consensus        13 ~~~~~~-~~~~~~~l~~A~~--~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~   87 (155)
                      .+++.. +..|.||||.|+.  .++.+++++|+++|++++.++..|.||||+|+..++  .+++++|+++|++++.++..
T Consensus       167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~  246 (764)
T PHA02716        167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVN  246 (764)
T ss_pred             CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCC
Confidence            445555 6789999999875  468999999999999999999999999999999985  48999999999999999999


Q ss_pred             CCCHHHHH-------------------------------------HhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Q 031662           88 KNTPLHYA-------------------------------------CLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALS  130 (155)
Q Consensus        88 ~~t~l~~a-------------------------------------~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  130 (155)
                      |.||||+|                                     +..|+.+++++|++.|++++.+|..|+||||+|+.
T Consensus       247 G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa  326 (764)
T PHA02716        247 GMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYIL  326 (764)
T ss_pred             CCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHH
Confidence            99999975                                     34577899999999999999999999999998764


Q ss_pred             --CCCHHHHHHHHHHHhhcccCCC
Q 031662          131 --RGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       131 --~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                        .++.+++++|+++|++++..+.
T Consensus       327 ~~~~~~eIVklLLe~GADIN~kD~  350 (764)
T PHA02716        327 RHNISTDIIKLLHEYGNDLNEPDN  350 (764)
T ss_pred             HhCCCchHHHHHHHcCCCCccCCC
Confidence              5689999999999999986653

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=7e-27  Score=161.15  Aligned_cols=133  Identities=29%  Similarity=0.447  Sum_probs=125.9

Q ss_pred             cccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC
Q 031662            9 INRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK   88 (155)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~   88 (155)
                      ++++.+++.......|||..||..|+++++++|++++++++..++.|.|.||+||+.|+.+++++|++.|+++|.++..|
T Consensus       104 ~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kG  183 (615)
T KOG0508|consen  104 LRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKG  183 (615)
T ss_pred             HHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccC
Confidence            45667777777888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHH
Q 031662           89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINT  142 (155)
Q Consensus        89 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~  142 (155)
                      +|+||.|++.|+.+++++|+++|+.+.. |.+|.|||..|+..|+.++|++|++
T Consensus       184 NTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  184 NTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             chHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999999999999998875 6779999999999999999999995

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.94  E-value=2.6e-26  Score=143.11  Aligned_cols=134  Identities=24%  Similarity=0.313  Sum_probs=112.5

Q ss_pred             cCCCcccHHHHHHHHHhCCHHHHHHHHHcCCC-----CCCCCCCCccHHHHHHhCCCH---HHHHHHHhcCCCCCCCC-C
Q 031662           16 ETSSPENIDALLAAARYDDIEDVISLASAGVP-----LDSKDSQGRTALHMASANGHL---GIVEYLIGRGVDINASN-E   86 (155)
Q Consensus        16 ~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-----~~~~~~~~~~~l~~a~~~~~~---~~~~~ll~~~~~~~~~~-~   86 (155)
                      ...+..|.||||+|++.|+...+........+     ++..+..|.||||+|+..++.   +++++|++.|++++.++ .
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~   90 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERV   90 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCC
Confidence            34567899999999999985332222221111     234678899999999999876   46899999999999998 5


Q ss_pred             CCCCHHHHHHhcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhccc
Q 031662           87 EKNTPLHYACLNGHTEVAKKLVL-SGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLEL  149 (155)
Q Consensus        87 ~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~  149 (155)
                      .|.||||+|+..++.+++++|++ .|++++.++..|+|||++|+..|+.+++++|+++|++.++
T Consensus        91 ~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~~  154 (154)
T PHA02736         91 FGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCKV  154 (154)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            89999999999999999999997 5999999999999999999999999999999999988753

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.2e-25  Score=146.29  Aligned_cols=131  Identities=18%  Similarity=0.220  Sum_probs=116.2

Q ss_pred             CcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCC--CHHHHHHHHhcCCCCCCCC-CCCCCHHHHH
Q 031662           19 SPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANG--HLGIVEYLIGRGVDINASN-EEKNTPLHYA   95 (155)
Q Consensus        19 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~-~~~~t~l~~a   95 (155)
                      .+..++||+.|++.|+++.++.|++.   ++..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            45678999999999999999999975   4567788999999999754  8999999999999999987 5899999998


Q ss_pred             Hhc---CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH--CCCHHHHHHHHHHHhhcccCCC
Q 031662           96 CLN---GHTEVAKKLVLSGANISVLNSHEQTPIDEALS--RGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        96 ~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      +..   ++.+++++|+++|++++.++..|.||||+|+.  .++.+++++|+++|++++..+.
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~  156 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDF  156 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccC
Confidence            764   47899999999999999999999999999876  4689999999999999876653

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=6.1e-26  Score=158.91  Aligned_cols=127  Identities=20%  Similarity=0.215  Sum_probs=114.0

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCC-CCCC-----CCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Q 031662           23 IDALLAAARYDDIEDVISLASAGVPL-DSKD-----SQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYAC   96 (155)
Q Consensus        23 ~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~-----~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~   96 (155)
                      .||+|.|+..++.+++++|+++|++. +..+     ..+.+++|.|...++.+++++|+++|++++.+|..|.||||+|+
T Consensus       150 ~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa  229 (437)
T PHA02795        150 LNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAI  229 (437)
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHH
Confidence            57999999999999999999999743 2221     23678899999999999999999999999999999999999999


Q ss_pred             hcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCC--------HHHHHHHHHHHhhccc
Q 031662           97 LNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGK--------MDIIDAINTAVAQLEL  149 (155)
Q Consensus        97 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~--------~~~~~~L~~~g~~~~~  149 (155)
                      ..|+.+++++|+++|++++.++..|+||||+|+..|+        .+++++|+++|++++.
T Consensus       230 ~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        230 YAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            9999999999999999999999999999999999884        6999999999998864

>PHA03095 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.9e-25  Score=161.23  Aligned_cols=135  Identities=24%  Similarity=0.281  Sum_probs=106.1

Q ss_pred             CccCCCcccHHHHHHHHHh--CCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCH--HHHHHHHhcCCCCCCCCCCCC
Q 031662           14 TTETSSPENIDALLAAARY--DDIEDVISLASAGVPLDSKDSQGRTALHMASANGHL--GIVEYLIGRGVDINASNEEKN   89 (155)
Q Consensus        14 ~~~~~~~~~~~~l~~A~~~--~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~ll~~~~~~~~~~~~~~   89 (155)
                      +....+..|.||||.++..  ++.++++.|++.|++++.++..|.||||+|+..++.  ..++.++..|++++.+|..|.
T Consensus       179 ~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~  258 (471)
T PHA03095        179 DVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQ  258 (471)
T ss_pred             CCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCC
Confidence            3334456677777777754  667777777777777777777888888888877754  567777888888888888888


Q ss_pred             CHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcc
Q 031662           90 TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLE  148 (155)
Q Consensus        90 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  148 (155)
                      ||||+|+..|+.+++++|++.|++++.++..|+||+++|+..|+.+++++|++.+++++
T Consensus       259 TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        259 TPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE  317 (471)
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence            88888888888888888888888888888888888888888888888888888877664

>PHA02798 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.3e-25  Score=161.32  Aligned_cols=140  Identities=19%  Similarity=0.262  Sum_probs=77.4

Q ss_pred             CCCccCCCcccHHHHHHHHHhC---CHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCC---HHHHHHHHhcCCCCCCCC
Q 031662           12 TQTTETSSPENIDALLAAARYD---DIEDVISLASAGVPLDSKDSQGRTALHMASANGH---LGIVEYLIGRGVDINASN   85 (155)
Q Consensus        12 ~~~~~~~~~~~~~~l~~A~~~~---~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~~~~~~~~   85 (155)
                      |++++..+..|.||||+|+..+   +.+++++|+++|++++.++..|.||||+|+..++   .+++++|++.|++++.++
T Consensus        99 GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~  178 (489)
T PHA02798         99 GADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHN  178 (489)
T ss_pred             CCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCccccc
Confidence            3444445556666666666653   5566666666666666666666666666666555   566666666655555442


Q ss_pred             -CCCCCHHHHHHhc----CcHHHHHHHHHcCCC---------------------------------------CcccCCCC
Q 031662           86 -EEKNTPLHYACLN----GHTEVAKKLVLSGAN---------------------------------------ISVLNSHE  121 (155)
Q Consensus        86 -~~~~t~l~~a~~~----~~~~~~~~Ll~~~~~---------------------------------------~~~~~~~~  121 (155)
                       ..+.||+|.++..    ++.+++++|+++|++                                       ++.+|..|
T Consensus       179 ~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G  258 (489)
T PHA02798        179 NKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELG  258 (489)
T ss_pred             CcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCC
Confidence             2344444443322    234444444443322                                       22334456


Q ss_pred             CCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662          122 QTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus       122 ~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      +||||+|+..++.+++++|+++|++++..+
T Consensus       259 ~TPL~~A~~~~~~~~v~~LL~~GAdin~~d  288 (489)
T PHA02798        259 FNPLYYSVSHNNRKIFEYLLQLGGDINIIT  288 (489)
T ss_pred             ccHHHHHHHcCcHHHHHHHHHcCCcccccC
Confidence            666666666666666666666666665443

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=7e-26  Score=164.39  Aligned_cols=136  Identities=26%  Similarity=0.325  Sum_probs=125.6

Q ss_pred             ccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHh-cC-CCCCCCCCCCCCHH
Q 031662           15 TETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIG-RG-VDINASNEEKNTPL   92 (155)
Q Consensus        15 ~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~~-~~~~~~~~~~~t~l   92 (155)
                      +...+..|.||||+|++.|.++++..|+..|++++.+..++.||||+|+.+|++.+++-|++ .+ ...+..|..|+|||
T Consensus       266 v~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpL  345 (929)
T KOG0510|consen  266 VNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPL  345 (929)
T ss_pred             hhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCch
Confidence            34667899999999999999999999999999999999999999999999999999999998 43 44677899999999


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCCc---ccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccC
Q 031662           93 HYACLNGHTEVAKKLVLSGANIS---VLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELG  150 (155)
Q Consensus        93 ~~a~~~~~~~~~~~Ll~~~~~~~---~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~  150 (155)
                      |+|+..|+.+++++|++.|+...   -.|.+|.||||.|+..|+..++++|+.+|+++...
T Consensus       346 Hlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~  406 (929)
T KOG0510|consen  346 HLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVK  406 (929)
T ss_pred             hhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeec
Confidence            99999999999999999998876   45999999999999999999999999999999653

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.93  E-value=3e-25  Score=160.91  Aligned_cols=142  Identities=16%  Similarity=0.184  Sum_probs=95.2

Q ss_pred             ccCCCccCCCcccHHHHHHHHHh---CCHHHHHHHHHcCCCC-CCCCCCCccHHHHHHhC--CCHHHHHHHHhcCCCCCC
Q 031662           10 NRTQTTETSSPENIDALLAAARY---DDIEDVISLASAGVPL-DSKDSQGRTALHMASAN--GHLGIVEYLIGRGVDINA   83 (155)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~A~~~---~~~~~v~~ll~~~~~~-~~~~~~~~~~l~~a~~~--~~~~~~~~ll~~~~~~~~   83 (155)
                      +.|++++..+..|.|||+.|+..   ++.+++++|+++|+++ +..+..|.||||+|+..  ++.+++++|+++|++++.
T Consensus        96 ~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~  175 (494)
T PHA02989         96 KFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFE  175 (494)
T ss_pred             HCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc
Confidence            44555556666777777776654   5677777777777777 66777777777776543  466777777777777766


Q ss_pred             -CCCCCCCHHHHHHhcC----cHHHHHHHHHcCCCCc--------------------------------------ccCCC
Q 031662           84 -SNEEKNTPLHYACLNG----HTEVAKKLVLSGANIS--------------------------------------VLNSH  120 (155)
Q Consensus        84 -~~~~~~t~l~~a~~~~----~~~~~~~Ll~~~~~~~--------------------------------------~~~~~  120 (155)
                       .+..|.||+|.|+..+    +.+++++|+++|++++                                      .+|..
T Consensus       176 ~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~  255 (494)
T PHA02989        176 KTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKK  255 (494)
T ss_pred             cccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCC
Confidence             4566777777665443    6666777666665543                                      23445


Q ss_pred             CCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662          121 EQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus       121 ~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      |+||||+|+..|+.+++++|+++|++++..+
T Consensus       256 G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d  286 (494)
T PHA02989        256 GFNPLLISAKVDNYEAFNYLLKLGDDIYNVS  286 (494)
T ss_pred             CCCHHHHHHHhcCHHHHHHHHHcCCCccccC
Confidence            6777777777777777777777777776544

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.93  E-value=5.5e-25  Score=148.59  Aligned_cols=114  Identities=22%  Similarity=0.257  Sum_probs=103.9

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCCCCCC----CCCccHHHHHHhCCCHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHh
Q 031662           23 IDALLAAARYDDIEDVISLASAGVPLDSKD----SQGRTALHMASANGHLGIVEYLIGRGVDINAS-NEEKNTPLHYACL   97 (155)
Q Consensus        23 ~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~----~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~~t~l~~a~~   97 (155)
                      .++|+.|++.|+.+++++|+++|++++.++    ..|.||||+|+..++.+++++|+++|++++.+ +..|.||||+|+.
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~  113 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVL  113 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHH
Confidence            356788888999999999999999999864    57999999999999999999999999999986 4689999999999


Q ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHH
Q 031662           98 NGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI  136 (155)
Q Consensus        98 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  136 (155)
                      .++.+++++|++.|++++.++..|.||+++|+..++.++
T Consensus       114 ~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~  152 (300)
T PHA02884        114 HGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFL  152 (300)
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhH
Confidence            999999999999999999999999999999998654433

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=1.2e-25  Score=141.65  Aligned_cols=138  Identities=25%  Similarity=0.277  Sum_probs=123.3

Q ss_pred             CCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q 031662           13 QTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPL   92 (155)
Q Consensus        13 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l   92 (155)
                      ..++..+..|.|||.||+.+|++..|++|++.|++++.......++|..|++.|..+++++|+.++.++|..|.+|-|||
T Consensus       151 n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpL  230 (296)
T KOG0502|consen  151 NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPL  230 (296)
T ss_pred             ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCcee
Confidence            44567788999999999999999999999999999988888889999999999999999999999999999999999999


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           93 HYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        93 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      .+|++.++.+|++.|++.|++++..+..|.+++..|+..|+. +|+.++++.+....++
T Consensus       231 lyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~  288 (296)
T KOG0502|consen  231 LYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQD  288 (296)
T ss_pred             eeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999988 7777777777766554

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.93  E-value=6.6e-25  Score=164.49  Aligned_cols=140  Identities=24%  Similarity=0.349  Sum_probs=111.5

Q ss_pred             CCccCCCcccHHHHHHHHHh-CCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCH
Q 031662           13 QTTETSSPENIDALLAAARY-DDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTP   91 (155)
Q Consensus        13 ~~~~~~~~~~~~~l~~A~~~-~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~   91 (155)
                      .++...+..|.||||.|+.. ++.++++.|++.|++++.++..|.||||+|+..++.+++++|+++|++++..+..|.||
T Consensus       332 adin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~  411 (682)
T PHA02876        332 ADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTA  411 (682)
T ss_pred             CCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCch
Confidence            34445566677777777764 46777777888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhcCc-HHHHHHHHHcCCCCcccCCCCCCHHHHHHHCC-CHHHHHHHHHHHhhcccCCC
Q 031662           92 LHYACLNGH-TEVAKKLVLSGANISVLNSHEQTPIDEALSRG-KMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        92 l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~L~~~g~~~~~~~~  152 (155)
                      ||+|+..++ ..++++|++.|++++.+|..|+||||+|+..+ +.+++++|+++|++++..+.
T Consensus       412 Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~  474 (682)
T PHA02876        412 LHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINI  474 (682)
T ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCC
Confidence            888876655 45678888889999999999999999999876 68999999999999876543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.93  E-value=9.7e-25  Score=158.30  Aligned_cols=138  Identities=19%  Similarity=0.255  Sum_probs=118.4

Q ss_pred             ccCCCc-cCCCcccHHHHHHHHHh--CCHHHHHHHHHcCCCCCC-CCCCCccHHHHHHhCC----CHHHHHHHHhcCCCC
Q 031662           10 NRTQTT-ETSSPENIDALLAAARY--DDIEDVISLASAGVPLDS-KDSQGRTALHMASANG----HLGIVEYLIGRGVDI   81 (155)
Q Consensus        10 ~~~~~~-~~~~~~~~~~l~~A~~~--~~~~~v~~ll~~~~~~~~-~~~~~~~~l~~a~~~~----~~~~~~~ll~~~~~~   81 (155)
                      +.|.++ ...+..|.||||+|+..  ++.+++++|++.|++++. .+..|.||||+|+..+    +.+++++|++.|+++
T Consensus       132 ~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v  211 (494)
T PHA02989        132 SKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI  211 (494)
T ss_pred             HCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCc
Confidence            344555 56678899999998764  688999999999999987 5778999999987654    788999998888765


Q ss_pred             C--------------------------------------CCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCC
Q 031662           82 N--------------------------------------ASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQT  123 (155)
Q Consensus        82 ~--------------------------------------~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t  123 (155)
                      +                                      .+|..|.||||+|+..++.+++++|++.|++++.++..|+|
T Consensus       212 n~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~T  291 (494)
T PHA02989        212 ETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDT  291 (494)
T ss_pred             cccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCC
Confidence            4                                      34556999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHhhc
Q 031662          124 PIDEALSRGKMDIIDAINTAVAQL  147 (155)
Q Consensus       124 ~l~~a~~~~~~~~~~~L~~~g~~~  147 (155)
                      ||++|+..|+.+++++|++.+...
T Consensus       292 pL~~A~~~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        292 VLTYAIKHGNIDMLNRILQLKPGK  315 (494)
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCh
Confidence            999999999999999999887543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.93  E-value=9.3e-25  Score=158.23  Aligned_cols=140  Identities=21%  Similarity=0.230  Sum_probs=95.5

Q ss_pred             ccCCCccCCCcccHHHHHHHHHh-----CCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCC---CHHHHHHHHhcCCCC
Q 031662           10 NRTQTTETSSPENIDALLAAARY-----DDIEDVISLASAGVPLDSKDSQGRTALHMASANG---HLGIVEYLIGRGVDI   81 (155)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~A~~~-----~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~---~~~~~~~ll~~~~~~   81 (155)
                      +.|.+++..+..|.||||.|+..     +..+++++|++.|+++|.++..|.||||+|+..+   +.+++++|+++|+++
T Consensus        59 ~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv  138 (489)
T PHA02798         59 NLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT  138 (489)
T ss_pred             HCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc
Confidence            34445555556677777776643     5567777777777777777777777777777654   567777777777777


Q ss_pred             CCCCCCCCCHHHHHHhcCc---HHHHHHHHHcCCCCcccC-CCCCCHHHHHHHC----CCHHHHHHHHHHHhhccc
Q 031662           82 NASNEEKNTPLHYACLNGH---TEVAKKLVLSGANISVLN-SHEQTPIDEALSR----GKMDIIDAINTAVAQLEL  149 (155)
Q Consensus        82 ~~~~~~~~t~l~~a~~~~~---~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~----~~~~~~~~L~~~g~~~~~  149 (155)
                      +.+|..|.||||+|+..++   .+++++|++.|++++..+ ..+.||+|.++..    ++.+++++|+++|++++.
T Consensus       139 n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~  214 (489)
T PHA02798        139 TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINK  214 (489)
T ss_pred             cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCccc
Confidence            7777777777777777666   677777777777776653 3566777766543    357777777777776654

>PHA02946 ankyin-like protein; Provisional

Probab=99.92  E-value=2.8e-24  Score=153.63  Aligned_cols=138  Identities=14%  Similarity=0.205  Sum_probs=76.2

Q ss_pred             cCCCccCCCcccHHHHHHHHHhC--CHHHHHHHHHcCCCCCC-CCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCC
Q 031662           11 RTQTTETSSPENIDALLAAARYD--DIEDVISLASAGVPLDS-KDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEE   87 (155)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~A~~~~--~~~~v~~ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~   87 (155)
                      .+.++...+..|.||||+|+..+  ..+++++|++.|++++. .+..|.|||| |+..++.+++++|++.|++++.+|..
T Consensus        94 ~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~  172 (446)
T PHA02946         94 HGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKF  172 (446)
T ss_pred             CcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCC
Confidence            34444455566667777666544  35666666666666653 3555566664 34445555555555555555555555


Q ss_pred             CCCHHHHHHhcCc--HHHHHHHHHcCCCCcccCCCCCCHHHHHHHCC--CHHHHHHHHHHHhhcccC
Q 031662           88 KNTPLHYACLNGH--TEVAKKLVLSGANISVLNSHEQTPIDEALSRG--KMDIIDAINTAVAQLELG  150 (155)
Q Consensus        88 ~~t~l~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~L~~~g~~~~~~  150 (155)
                      |.||||+|+..++  .+++++|+++|++++.+|..|.||||+|+..+  +.+++++|+. |++++..
T Consensus       173 G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~  238 (446)
T PHA02946        173 GKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQ  238 (446)
T ss_pred             CCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCC
Confidence            5555555544332  35555555555555555555555555555543  4555555553 4555443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=4.7e-24  Score=149.51  Aligned_cols=133  Identities=16%  Similarity=0.090  Sum_probs=119.1

Q ss_pred             CCcccHHHHHHHHH--hCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCC------CCCC
Q 031662           18 SSPENIDALLAAAR--YDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN------EEKN   89 (155)
Q Consensus        18 ~~~~~~~~l~~A~~--~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~------~~~~   89 (155)
                      ......|+||+++.  .|+.+++++|+++|++++..+  +.||+|.|+..++.+++++|+++|++.....      ..+.
T Consensus       112 ~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~--~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~  189 (437)
T PHA02795        112 NCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIE--CLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQY  189 (437)
T ss_pred             ccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCC--CCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhcc
Confidence            45568999999999  899999999999999998754  4799999999999999999999997543221      3477


Q ss_pred             CHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           90 TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        90 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      +++|.+...++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus       190 t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~  252 (437)
T PHA02795        190 TRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMS  252 (437)
T ss_pred             chhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            899999999999999999999999999999999999999999999999999999999987653

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.92  E-value=5.6e-24  Score=159.49  Aligned_cols=137  Identities=26%  Similarity=0.313  Sum_probs=97.9

Q ss_pred             CCccCCCcccHHHHHHHHHhCCH-HHHHHHHHcCCCCCCCCCCCccHHHHHHhCC-CHHHHHHHHhcCCCCCCCCCCCCC
Q 031662           13 QTTETSSPENIDALLAAARYDDI-EDVISLASAGVPLDSKDSQGRTALHMASANG-HLGIVEYLIGRGVDINASNEEKNT   90 (155)
Q Consensus        13 ~~~~~~~~~~~~~l~~A~~~~~~-~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~~t   90 (155)
                      ......+..|.||||.|+..++. +++++|++.|++++..+..|.||||+|+..+ +.++++.|+..|++++..+..|.|
T Consensus       264 ~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~T  343 (682)
T PHA02876        264 FSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYIT  343 (682)
T ss_pred             CCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCc
Confidence            34444556677777777777775 4677777777777777777777777777776 467777777777777777777777


Q ss_pred             HHHHHHhc-CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhccc
Q 031662           91 PLHYACLN-GHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLEL  149 (155)
Q Consensus        91 ~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~  149 (155)
                      |||+|+.. ++.+++.+|++.|++++.+|..|.||||+|+..++.+++++|+++|++++.
T Consensus       344 pLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~  403 (682)
T PHA02876        344 PLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEA  403 (682)
T ss_pred             HHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccc
Confidence            77777664 356667777777777777777777777777777777777777777776654

>PHA02917 ankyrin-like protein; Provisional

Probab=99.92  E-value=1e-23  Score=156.25  Aligned_cols=141  Identities=13%  Similarity=0.120  Sum_probs=111.2

Q ss_pred             cCCCccCCCcccHHHHHHHHHh---CCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCC---------------------
Q 031662           11 RTQTTETSSPENIDALLAAARY---DDIEDVISLASAGVPLDSKDSQGRTALHMASANG---------------------   66 (155)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~A~~~---~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~---------------------   66 (155)
                      .+......+..|.||||+|++.   |+.+++++|++.|++++..+..|.||||+|+..+                     
T Consensus        21 ~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~  100 (661)
T PHA02917         21 DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNI  100 (661)
T ss_pred             ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCC
Confidence            4444566678899999998665   7899999999999999999999999999887654                     


Q ss_pred             --------------CHHHHHHHHhcCCCCCCCCCCCCCHHHHHH--hcCcHHHHHHHHHcCCCCcccCC---CC------
Q 031662           67 --------------HLGIVEYLIGRGVDINASNEEKNTPLHYAC--LNGHTEVAKKLVLSGANISVLNS---HE------  121 (155)
Q Consensus        67 --------------~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~~---~~------  121 (155)
                                    +.+++++|+++|++++.+|..|+|||+.++  ..++.+++++|+++|++++.++.   .|      
T Consensus       101 ~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~  180 (661)
T PHA02917        101 NDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDY  180 (661)
T ss_pred             CCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccc
Confidence                          346677788888888888888888888543  46788888888888888876543   23      


Q ss_pred             -----CCHHHHHHH-----------CCCHHHHHHHHHHHhhcccCC
Q 031662          122 -----QTPIDEALS-----------RGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus       122 -----~t~l~~a~~-----------~~~~~~~~~L~~~g~~~~~~~  151 (155)
                           .||||+|+.           .++.+++++|+++|++++..+
T Consensus       181 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d  226 (661)
T PHA02917        181 QPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSID  226 (661)
T ss_pred             cccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCC
Confidence                 488888875           457888888888888887654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.91  E-value=2.5e-24  Score=163.28  Aligned_cols=131  Identities=27%  Similarity=0.458  Sum_probs=110.0

Q ss_pred             cCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q 031662           16 ETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYA   95 (155)
Q Consensus        16 ~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a   95 (155)
                      ......+.+++|.|...+.+..++.++++|.+++.++..+.||||+|+.+|+.++|++|+++|++++.+++.|+||||.|
T Consensus       501 ~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~A  580 (1143)
T KOG4177|consen  501 NLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQA  580 (1143)
T ss_pred             CccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHH
Confidence            33444555555555555555555555666666667778889999999999999999999999999999999999999999


Q ss_pred             HhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhh
Q 031662           96 CLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQ  146 (155)
Q Consensus        96 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~  146 (155)
                      +..|+.+++.+|+++|+++|..+.+|.|||++|++.|+.+++++|+..+.+
T Consensus       581 a~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  581 AQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             HHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            999999999999999999999999999999999999999999999998887

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=9e-24  Score=153.59  Aligned_cols=138  Identities=25%  Similarity=0.375  Sum_probs=124.3

Q ss_pred             cCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCC---------------CCCCCCCCccHHHHHHhCCCHHHHHHHH
Q 031662           11 RTQTTETSSPENIDALLAAARYDDIEDVISLASAGVP---------------LDSKDSQGRTALHMASANGHLGIVEYLI   75 (155)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~---------------~~~~~~~~~~~l~~a~~~~~~~~~~~ll   75 (155)
                      ++..++..+..+.+|||.|++.|++++++.+++.+..               ++..|.+|.||||+|++.|+.++++.|+
T Consensus       214 r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll  293 (929)
T KOG0510|consen  214 RQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLL  293 (929)
T ss_pred             hhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHH
Confidence            5566667778899999999999999999999998743               2456889999999999999999999999


Q ss_pred             hcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHH-cC-CCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcc
Q 031662           76 GRGVDINASNEEKNTPLHYACLNGHTEVAKKLVL-SG-ANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLE  148 (155)
Q Consensus        76 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  148 (155)
                      ..|++++.++.++.||||.|+..|+++.++-|++ .+ ...+..|..|.||||+|++.||..++++|++.|+.+.
T Consensus       294 ~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  294 GFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             HcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhh
Confidence            9999999999999999999999999999999998 55 3457789999999999999999999999999999875

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.91  E-value=4.3e-24  Score=161.99  Aligned_cols=150  Identities=22%  Similarity=0.304  Sum_probs=140.8

Q ss_pred             CCCcccccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCC
Q 031662            4 DADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA   83 (155)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~   83 (155)
                      -+.+.++.+..++.....|.||||+|+..|+.+.++.+++.++..+.....+.+++|.+...+....++.++++|+.++.
T Consensus       456 ~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~  535 (1143)
T KOG4177|consen  456 IARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDL  535 (1143)
T ss_pred             hhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceeh
Confidence            35677788888888999999999999999999999999999988888888899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCCc
Q 031662           84 SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGFT  153 (155)
Q Consensus        84 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~  153 (155)
                      ++..+.||||.|+..|+.+++++|+++|++++.++..|+||||.|+..|+.+|+++|+++|++++..+..
T Consensus       536 ~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~  605 (1143)
T KOG4177|consen  536 RTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLD  605 (1143)
T ss_pred             hcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999876654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=4.6e-24  Score=134.56  Aligned_cols=138  Identities=20%  Similarity=0.264  Sum_probs=122.8

Q ss_pred             CCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCH
Q 031662           12 TQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTP   91 (155)
Q Consensus        12 ~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~   91 (155)
                      +...+..+.-+++|+.+++.+.+++.+..+..+  .+|..|..|.|||++|+.+|++++++||++.|++++...+...++
T Consensus       119 ~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resA  196 (296)
T KOG0502|consen  119 GARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESA  196 (296)
T ss_pred             cccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhh
Confidence            344455566778888888888877777665554  456789999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           92 LHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        92 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      |.+|+..|.++++++|++++.++|..|.+|.|||-+|++-++.+|++.|++.|+++....
T Consensus       197 LsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~  256 (296)
T KOG0502|consen  197 LSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQED  256 (296)
T ss_pred             HhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCccccc
Confidence            999999999999999999999999999999999999999999999999999999997644

>PHA02917 ankyrin-like protein; Provisional

Probab=99.91  E-value=3.6e-23  Score=153.39  Aligned_cols=124  Identities=18%  Similarity=0.187  Sum_probs=106.8

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHH--hCCCHHHHHHHHhcCCCCCCCCC---CC----------
Q 031662           24 DALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMAS--ANGHLGIVEYLIGRGVDINASNE---EK----------   88 (155)
Q Consensus        24 ~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~---~~----------   88 (155)
                      .+++.|+..++++++++|+++|++++.+|..|.||||.++  ..++.+++++|+++|++++.+|.   .|          
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~  184 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRN  184 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccc
Confidence            4455667777889999999999999999999999999654  56899999999999999986553   23          


Q ss_pred             -CCHHHHHHh-----------cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCH--HHHHHHHHHHhhcc
Q 031662           89 -NTPLHYACL-----------NGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKM--DIIDAINTAVAQLE  148 (155)
Q Consensus        89 -~t~l~~a~~-----------~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~--~~~~~L~~~g~~~~  148 (155)
                       .||||+|+.           .++.+++++|+++|++++.+|.+|.||||+|+..|+.  +++++|++ |++..
T Consensus       185 ~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~  257 (661)
T PHA02917        185 CGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNT  257 (661)
T ss_pred             cccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccc
Confidence             599999986           4588999999999999999999999999999999985  79999975 77654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=3.7e-23  Score=151.28  Aligned_cols=138  Identities=18%  Similarity=0.208  Sum_probs=117.8

Q ss_pred             cCCCccCCCcccHHHHHHHHHhCC----HHHHHHHHHcCC--CCCCCCCCCccHHHH---HHhCC---------CHHHHH
Q 031662           11 RTQTTETSSPENIDALLAAARYDD----IEDVISLASAGV--PLDSKDSQGRTALHM---ASANG---------HLGIVE   72 (155)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~A~~~~~----~~~v~~ll~~~~--~~~~~~~~~~~~l~~---a~~~~---------~~~~~~   72 (155)
                      .|+++... ..|.||||+|+..++    .+++++|+++|+  +++.++..|.||||.   |...+         ..++++
T Consensus       368 ~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk  446 (672)
T PHA02730        368 NGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFD  446 (672)
T ss_pred             CCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHH
Confidence            34444443 578899999998874    899999999987  688889999999984   33222         235699


Q ss_pred             HHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCC-CCCCHHHHHHH--CCCHHHHHHHHHHHhhccc
Q 031662           73 YLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNS-HEQTPIDEALS--RGKMDIIDAINTAVAQLEL  149 (155)
Q Consensus        73 ~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~t~l~~a~~--~~~~~~~~~L~~~g~~~~~  149 (155)
                      +|+.+|++++.+|..|.||||+|+..++.+++++|+++|++++..+. .|.||++.|+.  .++.+++++|+++|++++.
T Consensus       447 ~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~~  526 (672)
T PHA02730        447 ILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLET  526 (672)
T ss_pred             HHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHHH
Confidence            99999999999999999999999999999999999999999999997 58999999987  4789999999999988753

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=8.4e-23  Score=155.50  Aligned_cols=132  Identities=20%  Similarity=0.215  Sum_probs=122.3

Q ss_pred             CcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Q 031662           19 SPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN   98 (155)
Q Consensus        19 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~   98 (155)
                      +....++|+.|+..|+.++++.|++.|.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~  601 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA  601 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           99 GHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        99 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      |+.+++++|++.++..+.  ..+.++|+.|+..|+.+++++|+++|++++..+.
T Consensus       602 g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~  653 (823)
T PLN03192        602 KHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDH  653 (823)
T ss_pred             CCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCC
Confidence            999999999988766553  4577999999999999999999999999987654

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.90  E-value=1e-22  Score=115.70  Aligned_cols=88  Identities=40%  Similarity=0.605  Sum_probs=50.7

Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHH
Q 031662           26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAK  105 (155)
Q Consensus        26 l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  105 (155)
                      ||+|++.|+++++++|++.+.+++.    |.+|||+|+..++.+++++|++.|++++.++..|.||||+|+..++.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            4556666666666666665555443    455666666666666666666666666555555666666666666666666


Q ss_pred             HHHHcCCCCccc
Q 031662          106 KLVLSGANISVL  117 (155)
Q Consensus       106 ~Ll~~~~~~~~~  117 (155)
                      +|+++|++++.+
T Consensus        77 ~Ll~~g~~~~~~   88 (89)
T PF12796_consen   77 LLLEHGADVNIR   88 (89)
T ss_dssp             HHHHTTT-TTSS
T ss_pred             HHHHcCCCCCCc
Confidence            666665555544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.90  E-value=8.6e-23  Score=116.01  Aligned_cols=89  Identities=35%  Similarity=0.599  Sum_probs=82.4

Q ss_pred             HHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHH
Q 031662           59 LHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIID  138 (155)
Q Consensus        59 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  138 (155)
                      ||+|+..++.+++++|++.+.+++.    |.||+|+|+..|+.+++++|+++|++++.++.+|+|||++|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            7999999999999999999888776    889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccCC
Q 031662          139 AINTAVAQLELGG  151 (155)
Q Consensus       139 ~L~~~g~~~~~~~  151 (155)
                      +|+++|++++..+
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999999998764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.89  E-value=6e-23  Score=134.62  Aligned_cols=117  Identities=36%  Similarity=0.546  Sum_probs=110.6

Q ss_pred             CCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q 031662           13 QTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPL   92 (155)
Q Consensus        13 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l   92 (155)
                      .+.+..+..|.+|||+|++.|+..+++.|+++|+.+|..+....||||.|+..|+.++++.|++..+++|+.+..|+|||
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntpl  104 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPL  104 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCch
Confidence            34456678999999999999999999999999999999888889999999999999999999999999999999999999


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Q 031662           93 HYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEAL  129 (155)
Q Consensus        93 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~  129 (155)
                      |+||..|.-.+++-|+..|+.++..+.+|.||++.|.
T Consensus       105 hyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  105 HYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             hhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            9999999999999999999999999999999999764

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.89  E-value=1.6e-21  Score=116.98  Aligned_cols=123  Identities=35%  Similarity=0.587  Sum_probs=116.8

Q ss_pred             CcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Q 031662           19 SPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN   98 (155)
Q Consensus        19 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~   98 (155)
                      +..|.|||+.|++.++.++++++++.+.+.+..+..|.+++|+|+..++.+++++++..+..++..+..+.||+|+|+..
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            46788999999999999999999999998888899999999999999999999999999988888999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHH
Q 031662           99 GHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN  141 (155)
Q Consensus        99 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~  141 (155)
                      ++.+++++|++++.+++..+..+.||++.|...++.+++++|+
T Consensus        84 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          84 GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999999999999999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=1.3e-22  Score=141.71  Aligned_cols=145  Identities=30%  Similarity=0.416  Sum_probs=130.4

Q ss_pred             ccccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCC-----
Q 031662            8 SINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDIN-----   82 (155)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~-----   82 (155)
                      .+..+...+..+.+|.|+||.+|.-.+.++|++++++|.++|..|..+|||+|.|+..++..++++++.+|+++.     
T Consensus        59 ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsd  138 (527)
T KOG0505|consen   59 LLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSD  138 (527)
T ss_pred             HhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCC
Confidence            344556667788999999999999999999999999999999999999999999999999999999999876621     


Q ss_pred             ------------------------------------------------------CCCCCCCCHHHHHHhcCcHHHHHHHH
Q 031662           83 ------------------------------------------------------ASNEEKNTPLHYACLNGHTEVAKKLV  108 (155)
Q Consensus        83 ------------------------------------------------------~~~~~~~t~l~~a~~~~~~~~~~~Ll  108 (155)
                                                                            .+...|.|.+|.|+..|..++.++|+
T Consensus       139 g~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl  218 (527)
T KOG0505|consen  139 GNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLL  218 (527)
T ss_pred             CCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHH
Confidence                                                                  22234789999999999999999999


Q ss_pred             HcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662          109 LSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       109 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      +.|.+++.+|.+||||||.|+..|..+++++|+++|++.+....
T Consensus       219 ~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~  262 (527)
T KOG0505|consen  219 QAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTK  262 (527)
T ss_pred             HhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhh
Confidence            99999999999999999999999999999999999999886544

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=7e-22  Score=124.35  Aligned_cols=112  Identities=21%  Similarity=0.250  Sum_probs=100.5

Q ss_pred             cCCCccCCCcccHHHHHHHHHhCCHH---HHHHHHHcCCCCCCCC-CCCccHHHHHHhCCCHHHHHHHHh-cCCCCCCCC
Q 031662           11 RTQTTETSSPENIDALLAAARYDDIE---DVISLASAGVPLDSKD-SQGRTALHMASANGHLGIVEYLIG-RGVDINASN   85 (155)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~A~~~~~~~---~v~~ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~   85 (155)
                      .+......+..|.||||+|+..|+.+   ++++|++.|++++.++ ..|.||||+|+..++.+++++|+. .|++++.++
T Consensus        46 ~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d  125 (166)
T PHA02743         46 DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAIN  125 (166)
T ss_pred             cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcC
Confidence            34445566788999999999998765   4899999999999998 589999999999999999999995 799999999


Q ss_pred             CCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCC
Q 031662           86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQ  122 (155)
Q Consensus        86 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  122 (155)
                      ..|.||||+|+..++.+++++|+++|++++.++..|.
T Consensus       126 ~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        126 YQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            9999999999999999999999999999998887764

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=1.9e-22  Score=135.40  Aligned_cols=126  Identities=23%  Similarity=0.348  Sum_probs=82.3

Q ss_pred             CCCcccHHHHHHHHHhCCHHHHHHHHHcC-CCCCCCCCCCccHHHHHHhC-----CCHHHHHHHHhcCCCCCCC-CCCCC
Q 031662           17 TSSPENIDALLAAARYDDIEDVISLASAG-VPLDSKDSQGRTALHMASAN-----GHLGIVEYLIGRGVDINAS-NEEKN   89 (155)
Q Consensus        17 ~~~~~~~~~l~~A~~~~~~~~v~~ll~~~-~~~~~~~~~~~~~l~~a~~~-----~~~~~~~~ll~~~~~~~~~-~~~~~   89 (155)
                      .-+.+|.|+||+++.++++++|+.|++.| ++++.+++-|+||+++++..     .+..++..|++.| ++|++ ...|.
T Consensus       263 laDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQ  341 (452)
T KOG0514|consen  263 LADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQ  341 (452)
T ss_pred             hhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcc
Confidence            34567788888888888888888888876 67777777676666665533     2345555555543 45543 23566


Q ss_pred             CHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHH
Q 031662           90 TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTA  143 (155)
Q Consensus        90 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~  143 (155)
                      |+|++|+.+|+.++++.|+..|+++|..|.+|.|+|.+|+++||.|++++|+..
T Consensus       342 TALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~  395 (452)
T KOG0514|consen  342 TALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV  395 (452)
T ss_pred             hhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhcc
Confidence            666666666666666666666666666666666666666666666666666544

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.88  E-value=1.3e-21  Score=119.39  Aligned_cols=125  Identities=30%  Similarity=0.383  Sum_probs=105.2

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCC-CCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHH
Q 031662           24 DALLAAARYDDIEDVISLASAGV-PLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTE  102 (155)
Q Consensus        24 ~~l~~A~~~~~~~~v~~ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  102 (155)
                      .-+.+|+..+.+..|+.|++..+ .+|.+|.++.||||-|++.++.++++.|+..|++.+.+...|+||||.||...+.+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            34788999999999999988775 46889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHHCCC-HHHHHHHH-HHHhhcc
Q 031662          103 VAKKLVLSGANISVLNSHEQTPIDEALSRGK-MDIIDAIN-TAVAQLE  148 (155)
Q Consensus       103 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~L~-~~g~~~~  148 (155)
                      ++.+|+++|++++......+||||+|+...+ ...+++|+ +.+.+..
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg  192 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG  192 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChh
Confidence            9999999999999998888999999988665 34445443 3344433

>PHA02730 ankyrin-like protein; Provisional

Probab=99.88  E-value=1.2e-21  Score=143.44  Aligned_cols=132  Identities=17%  Similarity=0.066  Sum_probs=116.7

Q ss_pred             CCCcccHHHHHHHHHhC---CHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCC--CHHHHHHHHhcCC--CCCCCCCCCC
Q 031662           17 TSSPENIDALLAAARYD---DIEDVISLASAGVPLDSKDSQGRTALHMASANG--HLGIVEYLIGRGV--DINASNEEKN   89 (155)
Q Consensus        17 ~~~~~~~~~l~~A~~~~---~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~--~~~~~~~~~~   89 (155)
                      ..+..|.||||+|+..+   +.+++++|+++|++++.+|..|.||||+|+..+  +.+++++|++.|+  +++..+..+.
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d  115 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIND  115 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCC
Confidence            45678999999999987   599999999999999999999999999999876  7999999999965  5577787899


Q ss_pred             CHHHHHHh--cCcHHHHHHHHH-cCCCCcccCC-----CCCCHHHHHHHCCCHHHHHHHHHHHhhcc
Q 031662           90 TPLHYACL--NGHTEVAKKLVL-SGANISVLNS-----HEQTPIDEALSRGKMDIIDAINTAVAQLE  148 (155)
Q Consensus        90 t~l~~a~~--~~~~~~~~~Ll~-~~~~~~~~~~-----~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  148 (155)
                      +|++.++.  .++.+++++|++ .+.+++....     .|.+|+.++...++.++|++|+++|+++.
T Consensus       116 ~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~  182 (672)
T PHA02730        116 FDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYST  182 (672)
T ss_pred             chHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccc
Confidence            99998888  888999999996 6677765532     78999999999999999999999999984

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.87  E-value=3.2e-21  Score=117.68  Aligned_cols=122  Identities=25%  Similarity=0.281  Sum_probs=109.7

Q ss_pred             cCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCC
Q 031662           11 RTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNT   90 (155)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t   90 (155)
                      +...++.++.+++||||.|+..|++++++.|+..|++.+.+...||||||-||.-.+.+++.+|+++|+++++......|
T Consensus        86 ~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~lt  165 (228)
T KOG0512|consen   86 KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLT  165 (228)
T ss_pred             ccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccch
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcHHH-HHHHH-HcCCCCcccCCCCCCHHHHHHHCC
Q 031662           91 PLHYACLNGHTEV-AKKLV-LSGANISVLNSHEQTPIDEALSRG  132 (155)
Q Consensus        91 ~l~~a~~~~~~~~-~~~Ll-~~~~~~~~~~~~~~t~l~~a~~~~  132 (155)
                      |||+++-..+... +++|+ +.+..+...+..+.||+.+|.+.+
T Consensus       166 pLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  166 PLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             hhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            9999987776544 45554 567888888999999999998864

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.85  E-value=4.8e-21  Score=138.67  Aligned_cols=138  Identities=27%  Similarity=0.273  Sum_probs=129.9

Q ss_pred             CcccccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCC
Q 031662            6 DPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN   85 (155)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~   85 (155)
                      -+...+....+..+..++|+||.|+..|+.++++.|++..+-++..+..|.+|||+|++.|+.++++.++..+..+|..+
T Consensus        33 l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~  112 (854)
T KOG0507|consen   33 LFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVN  112 (854)
T ss_pred             CCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCccc
Confidence            34445666677888899999999999999999999999999899899889999999999999999999999998899999


Q ss_pred             CCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHH
Q 031662           86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTA  143 (155)
Q Consensus        86 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~  143 (155)
                      ..|.||||.|++.|+.+++.+|+++|++...++..+.|++++|++.|..++++.|++.
T Consensus       113 ~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  113 IENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK  170 (854)
T ss_pred             ccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999999999988

>PHA02792 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.4e-20  Score=136.76  Aligned_cols=128  Identities=16%  Similarity=0.132  Sum_probs=112.8

Q ss_pred             ccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCC--ccHHHHHHhCCCH---HHHHHHHhcCCCCCCCCCCCCCHHHHH
Q 031662           21 ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQG--RTALHMASANGHL---GIVEYLIGRGVDINASNEEKNTPLHYA   95 (155)
Q Consensus        21 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~--~~~l~~a~~~~~~---~~~~~ll~~~~~~~~~~~~~~t~l~~a   95 (155)
                      ...+.++.|+..|+.+++++|+++|++++.++..|  .||||+|+.....   +++++++++|++++.+|..|.||||+|
T Consensus       338 ~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~A  417 (631)
T PHA02792        338 KHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYC  417 (631)
T ss_pred             CcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHH
Confidence            35667999999999999999999999999888764  6999998776654   468999999999999999999999999


Q ss_pred             HhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH--C--------CCHHHHHHHHHHHhhcc
Q 031662           96 CLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALS--R--------GKMDIIDAINTAVAQLE  148 (155)
Q Consensus        96 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~--~--------~~~~~~~~L~~~g~~~~  148 (155)
                      +..++.+++++|+++|++++.++..|.||+++|+.  .        ...++++.|+++|.+++
T Consensus       418 a~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        418 IESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            99999999999999999999999999999999976  2        22567899999987765

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.85  E-value=5.8e-20  Score=124.33  Aligned_cols=119  Identities=18%  Similarity=0.240  Sum_probs=104.1

Q ss_pred             CcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCC-CCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Q 031662           19 SPENIDALLAAARYDDIEDVISLASAGVPLDSKD-SQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACL   97 (155)
Q Consensus        19 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~   97 (155)
                      +..|.||||+|++.++.+++++|+++|++++.++ ..|.||||+|+..++.+++++|+.+|++++.++..|.||+++|+.
T Consensus        67 d~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~  146 (300)
T PHA02884         67 ENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALM  146 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            3578999999999999999999999999999864 579999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHh
Q 031662           98 NGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA  145 (155)
Q Consensus        98 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~  145 (155)
                      .++.+++..+.  |..   .+..+.+|.+.+   ++.+++++|+++++
T Consensus       147 ~~~~~~~~~~~--~~~---~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        147 ICNNFLAFMIC--DNE---ISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             hCChhHHHHhc--CCc---ccccccChhhhh---ccHHHHHHHHHHHH
Confidence            99888876554  322   355667787764   46899999999998

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=2.3e-20  Score=117.90  Aligned_cols=103  Identities=20%  Similarity=0.305  Sum_probs=92.4

Q ss_pred             CCCCCCCccHHHHHHhCCCHHHHHHHHh------cCCCCCCCCCCCCCHHHHHHhcCc----HHHHHHHHHcCCCCcccC
Q 031662           49 DSKDSQGRTALHMASANGHLGIVEYLIG------RGVDINASNEEKNTPLHYACLNGH----TEVAKKLVLSGANISVLN  118 (155)
Q Consensus        49 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~------~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~  118 (155)
                      +.++..|.|+||+|+..|+.++++.|+.      .|++++.+|..|.||||+|+..++    .+++++|++.|++++.++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            4567889999999999999999998854      357889999999999999999998    588999999999999988


Q ss_pred             C-CCCCHHHHHHHCCCHHHHHHHHH-HHhhcccCC
Q 031662          119 S-HEQTPIDEALSRGKMDIIDAINT-AVAQLELGG  151 (155)
Q Consensus       119 ~-~~~t~l~~a~~~~~~~~~~~L~~-~g~~~~~~~  151 (155)
                      . .|+||||+|+..++.+++++|+. .|++++..+
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n  129 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCN  129 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCC
Confidence            5 89999999999999999999997 588887654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.84  E-value=1.5e-20  Score=142.27  Aligned_cols=127  Identities=22%  Similarity=0.231  Sum_probs=110.8

Q ss_pred             CcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCC--------------CCCccHHHHHHhCCCHHHHHHHHhcCCCCCCC
Q 031662           19 SPENIDALLAAARYDDIEDVISLASAGVPLDSKD--------------SQGRTALHMASANGHLGIVEYLIGRGVDINAS   84 (155)
Q Consensus        19 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~   84 (155)
                      ...|.||||.|+..|+.++++.|+++|++++.+.              ..|.+|||.|+..++.+++++|+++|++++.+
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~  204 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTA  204 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhH
Confidence            4579999999999999999999999999988542              35899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHhcC---------cHHHHHHHHHcCCCC-------cccCCCCCCHHHHHHHCCCHHHHHHHHHHHh
Q 031662           85 NEEKNTPLHYACLNG---------HTEVAKKLVLSGANI-------SVLNSHEQTPIDEALSRGKMDIIDAINTAVA  145 (155)
Q Consensus        85 ~~~~~t~l~~a~~~~---------~~~~~~~Ll~~~~~~-------~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~  145 (155)
                      |..|+||||+|+..+         ...+.+++++.+...       +..|..|.|||++|+..|+.+++++|++.+.
T Consensus       205 d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~  281 (743)
T TIGR00870       205 DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKY  281 (743)
T ss_pred             hhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHH
Confidence            999999999999886         234566666655443       6678999999999999999999999999653

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.84  E-value=2e-20  Score=102.72  Aligned_cols=103  Identities=27%  Similarity=0.445  Sum_probs=94.9

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHH
Q 031662           25 ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVA  104 (155)
Q Consensus        25 ~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  104 (155)
                      .+.|++++|..+.|+.....|.++|... .|++|||||+-+|..++++||+..|++++.+|+.|-|||..|+..|+.+|+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            3678999999999999999998877544 789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCcccCCCCCCHHHHH
Q 031662          105 KKLVLSGANISVLNSHEQTPIDEA  128 (155)
Q Consensus       105 ~~Ll~~~~~~~~~~~~~~t~l~~a  128 (155)
                      ++|++.|++-..+..+|.+.+..+
T Consensus        84 klLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   84 KLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHcCcccceeCCCchhHHhhc
Confidence            999999999999888888877644

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.84  E-value=3e-20  Score=135.46  Aligned_cols=127  Identities=28%  Similarity=0.274  Sum_probs=118.6

Q ss_pred             CCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCC-----------------------CCCCccHHHHHHhCCCHHHHHH
Q 031662           17 TSSPENIDALLAAARYDDIEDVISLASAGVPLDSK-----------------------DSQGRTALHMASANGHLGIVEY   73 (155)
Q Consensus        17 ~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~-----------------------~~~~~~~l~~a~~~~~~~~~~~   73 (155)
                      .....|.||||+|+.+.+.++|++|++.|+|++.+                       -..|+.||-+|+..++.+++++
T Consensus       179 ~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrl  258 (782)
T KOG3676|consen  179 SEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRL  258 (782)
T ss_pred             hHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHH
Confidence            34578999999999999999999999999998642                       1257899999999999999999


Q ss_pred             HHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHCCCHHHHHHHHHH
Q 031662           74 LIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGAN--ISVLNSHEQTPIDEALSRGKMDIIDAINTA  143 (155)
Q Consensus        74 ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~--~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~  143 (155)
                      |+++|+|++++|..|+|.||.++.....+|.++++++|++  ...+|..|-|||.+|++.|..++++.+++.
T Consensus       259 Ll~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  259 LLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999  889999999999999999999999999988

>PHA02792 ankyrin-like protein; Provisional

Probab=99.82  E-value=1.4e-19  Score=131.65  Aligned_cols=128  Identities=18%  Similarity=0.238  Sum_probs=112.8

Q ss_pred             cCCCcccHHHHH-HHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHh-CCCHHHHHHHHhcCCCC------------
Q 031662           16 ETSSPENIDALL-AAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASA-NGHLGIVEYLIGRGVDI------------   81 (155)
Q Consensus        16 ~~~~~~~~~~l~-~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~-~~~~~~~~~ll~~~~~~------------   81 (155)
                      ...+-.+.+++| .|...|++|++++|+++|+++|..+..+.+++++|+. .++.+++++|+++|+++            
T Consensus        65 ~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~  144 (631)
T PHA02792         65 DYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIII  144 (631)
T ss_pred             CcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhh
Confidence            345556777876 5667899999999999999999999889999999965 68999999999999763            


Q ss_pred             ------------------------CCCCCCCCCHHHHHHhcC-------cHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Q 031662           82 ------------------------NASNEEKNTPLHYACLNG-------HTEVAKKLVLSGANISVLNSHEQTPIDEALS  130 (155)
Q Consensus        82 ------------------------~~~~~~~~t~l~~a~~~~-------~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  130 (155)
                                              +.+|..|.||||+++..+       +.++++.|+++|++++.+|..|.||||+|+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~  224 (631)
T PHA02792        145 EQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVD  224 (631)
T ss_pred             hhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHH
Confidence                                    244567999999999999       8999999999999999999999999999999


Q ss_pred             CC--CHHHHHHHHHH
Q 031662          131 RG--KMDIIDAINTA  143 (155)
Q Consensus       131 ~~--~~~~~~~L~~~  143 (155)
                      +.  ..|++++|.+.
T Consensus       225 ~~~i~~ei~~~L~~~  239 (631)
T PHA02792        225 KCDIKREIFDALFDS  239 (631)
T ss_pred             cccchHHHHHHHHhc
Confidence            99  79999999874

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.82  E-value=9.9e-21  Score=124.31  Aligned_cols=124  Identities=29%  Similarity=0.450  Sum_probs=110.0

Q ss_pred             HHHHhCCHHHHHHHHH-cCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHH
Q 031662           28 AAARYDDIEDVISLAS-AGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKK  106 (155)
Q Consensus        28 ~A~~~~~~~~v~~ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  106 (155)
                      .-|+.|+.-.|+..++ ..-+.|..|..|.+|||+|++.|+..+++.|+.+|+.+|..+....||||+|+..|+.+++..
T Consensus         6 ~wcregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen    6 GWCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             hhhhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHH
Confidence            3455555444444444 346788889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662          107 LVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus       107 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      |++..++++..+..|.||||+||.-|+..+.+-|++.|+.+++.+
T Consensus        86 ll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icn  130 (448)
T KOG0195|consen   86 LLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICN  130 (448)
T ss_pred             HHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecc
Confidence            999999999999999999999999999999999999999987654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.82  E-value=4.6e-20  Score=114.92  Aligned_cols=99  Identities=21%  Similarity=0.289  Sum_probs=90.8

Q ss_pred             CCCcccHHHHHHHHHhCCH---HHHHHHHHcCCCCCCCC-CCCccHHHHHHhCCCHHHHHHHHh-cCCCCCCCCCCCCCH
Q 031662           17 TSSPENIDALLAAARYDDI---EDVISLASAGVPLDSKD-SQGRTALHMASANGHLGIVEYLIG-RGVDINASNEEKNTP   91 (155)
Q Consensus        17 ~~~~~~~~~l~~A~~~~~~---~~v~~ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~t~   91 (155)
                      ..+..|.||||+|+..++.   +++++|++.|.+++.++ ..|.||||+|+..++.+++++|+. .+++++.++..|.||
T Consensus        50 ~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tp  129 (154)
T PHA02736         50 EYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTP  129 (154)
T ss_pred             HhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCH
Confidence            3467899999999999987   46889999999999998 489999999999999999999998 499999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCc
Q 031662           92 LHYACLNGHTEVAKKLVLSGANIS  115 (155)
Q Consensus        92 l~~a~~~~~~~~~~~Ll~~~~~~~  115 (155)
                      ||+|+..++.+++++|+++|++.+
T Consensus       130 L~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        130 YYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999999998764

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.81  E-value=1.1e-18  Score=114.57  Aligned_cols=128  Identities=30%  Similarity=0.453  Sum_probs=120.3

Q ss_pred             CCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCC-----HHHHHHHHhcCC---CCCCCCCCC
Q 031662           17 TSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGH-----LGIVEYLIGRGV---DINASNEEK   88 (155)
Q Consensus        17 ~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~ll~~~~---~~~~~~~~~   88 (155)
                      ..+..+.++++.++..++.+.+++++..+.+++.++..|.|++|+|+..++     .+++++|++.|+   ..+.++..|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            334557889999999999999999999999999999999999999999999     999999999999   566679999


Q ss_pred             CCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHH
Q 031662           89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAV  144 (155)
Q Consensus        89 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g  144 (155)
                      .||+|+|+..|+.+++++|++.|++++.++..|.|+++.|+..++.+++..+.+.+
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999965

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.81  E-value=5.4e-19  Score=133.87  Aligned_cols=136  Identities=21%  Similarity=0.217  Sum_probs=96.7

Q ss_pred             CCCccCCCcccHHHHH-HHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCC---HHHHHHHHhcCCC------C
Q 031662           12 TQTTETSSPENIDALL-AAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGH---LGIVEYLIGRGVD------I   81 (155)
Q Consensus        12 ~~~~~~~~~~~~~~l~-~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~~~------~   81 (155)
                      +.+++..+..|.|||| .|+..++.++++.|++.+.    .+..|.|+||.|+....   ..+++.+...+.+      +
T Consensus        42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~  117 (743)
T TIGR00870        42 KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELA  117 (743)
T ss_pred             ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhh
Confidence            4445556677788888 7777777778877777765    45567777877776221   1233333332211      1


Q ss_pred             C----CCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccC--------------CCCCCHHHHHHHCCCHHHHHHHHHH
Q 031662           82 N----ASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLN--------------SHEQTPIDEALSRGKMDIIDAINTA  143 (155)
Q Consensus        82 ~----~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~--------------~~~~t~l~~a~~~~~~~~~~~L~~~  143 (155)
                      +    .....|.||||+|+..|+.+++++|+++|++++.++              ..|.|||+.|+..++.+++++|+++
T Consensus       118 ~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~  197 (743)
T TIGR00870       118 NDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED  197 (743)
T ss_pred             ccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcC
Confidence            1    112468899999999999999999999999988653              2588999999999999999999999


Q ss_pred             HhhcccCC
Q 031662          144 VAQLELGG  151 (155)
Q Consensus       144 g~~~~~~~  151 (155)
                      |+|++..+
T Consensus       198 gadin~~d  205 (743)
T TIGR00870       198 PADILTAD  205 (743)
T ss_pred             CcchhhHh
Confidence            98876543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.80  E-value=7.3e-19  Score=115.28  Aligned_cols=133  Identities=29%  Similarity=0.396  Sum_probs=121.5

Q ss_pred             cHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHhcCc
Q 031662           22 NIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA-SNEEKNTPLHYACLNGH  100 (155)
Q Consensus        22 ~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~-~~~~~~t~l~~a~~~~~  100 (155)
                      -..+|..++.+++++....|++..-++|.+|..|.++|..|++.|+.++++.+++.|+|+|. ++..+.|||++|+..|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            45689999999999999999999878999999999999999999999999999999999986 67788999999999999


Q ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCCcc
Q 031662          101 TEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGFTV  154 (155)
Q Consensus       101 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~~  154 (155)
                      .++.++|++.|+.....+.-|+|+-.+|+.-|+-+||..+-++-..-.+..|+.
T Consensus        92 ~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~t~~~leyyt~  145 (396)
T KOG1710|consen   92 QDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNHITIDVLEYYTR  145 (396)
T ss_pred             chHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhccccHHHHHHhcc
Confidence            999999999999999999999999999999999999999887765555555543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.79  E-value=1.7e-19  Score=121.47  Aligned_cols=104  Identities=27%  Similarity=0.452  Sum_probs=89.1

Q ss_pred             CCCCCCCCccHHHHHHhCCCHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHhc-----CcHHHHHHHHHcCCCCccc-CCC
Q 031662           48 LDSKDSQGRTALHMASANGHLGIVEYLIGRG-VDINASNEEKNTPLHYACLN-----GHTEVAKKLVLSGANISVL-NSH  120 (155)
Q Consensus        48 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~t~l~~a~~~-----~~~~~~~~Ll~~~~~~~~~-~~~  120 (155)
                      +|.-|.+|+|+|||++...++++++.|++.| ++++.+++.|.||.++++..     .+.+++..|+.. .++|.+ ...
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-gnVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM-GDVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc-cCcchhhhhh
Confidence            4678999999999999999999999999985 88999999999999987643     345677777755 566665 568


Q ss_pred             CCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662          121 EQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       121 ~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      |+|+|.+|+.+|+.++|+.|+..|+|+++++-
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDd  371 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDD  371 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccC
Confidence            99999999999999999999999999998764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.76  E-value=1.1e-18  Score=126.62  Aligned_cols=140  Identities=24%  Similarity=0.231  Sum_probs=122.0

Q ss_pred             cCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCC
Q 031662           11 RTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNT   90 (155)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t   90 (155)
                      .....+..+..|..|||+|++.|+.++++.++.++..+|.....|.+|||.|+..++.+++.+|+.++++.-.++..+.|
T Consensus        71 ~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t  150 (854)
T KOG0507|consen   71 YEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKET  150 (854)
T ss_pred             chhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCccccc
Confidence            33444555678899999999999999999999999888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCC--------CcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccC
Q 031662           91 PLHYACLNGHTEVAKKLVLSGAN--------ISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELG  150 (155)
Q Consensus        91 ~l~~a~~~~~~~~~~~Ll~~~~~--------~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~  150 (155)
                      ++..|+++|+.++++.|+.....        ...++..+.+|+|+|++.|+.++++.|+..|.+++..
T Consensus       151 ~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~  218 (854)
T KOG0507|consen  151 VLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYT  218 (854)
T ss_pred             HHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccc
Confidence            99999999999999999875211        2345667789999999999999999999999988753

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.76  E-value=1.8e-17  Score=123.81  Aligned_cols=106  Identities=32%  Similarity=0.375  Sum_probs=97.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHH
Q 031662           24 DALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEV  103 (155)
Q Consensus        24 ~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  103 (155)
                      ..|+.|+..|+.+.++.|++.|++++.+|..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..++.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHc-------CCCCcccCCCCCCHHHHHH
Q 031662          104 AKKLVLS-------GANISVLNSHEQTPIDEAL  129 (155)
Q Consensus       104 ~~~Ll~~-------~~~~~~~~~~~~t~l~~a~  129 (155)
                      +++|+++       |++.+..+..|.+|+..+.
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999998       8888888887777766443

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.76  E-value=6e-18  Score=93.06  Aligned_cols=92  Identities=25%  Similarity=0.336  Sum_probs=85.0

Q ss_pred             cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHH
Q 031662           57 TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI  136 (155)
Q Consensus        57 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  136 (155)
                      -.+.+++..|..+-++-.+..|.+++.. ..|++|||+|+..|+.+++++|+..|++++.+|.+|.|||-.|+..||.+|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence            3577889999999999999889888765 389999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccc
Q 031662          137 IDAINTAVAQLEL  149 (155)
Q Consensus       137 ~~~L~~~g~~~~~  149 (155)
                      |++|++.|++...
T Consensus        83 VklLL~~GAdrt~   95 (117)
T KOG4214|consen   83 VKLLLQNGADRTI   95 (117)
T ss_pred             HHHHHHcCcccce
Confidence            9999999998754

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=5.8e-17  Score=96.99  Aligned_cols=101  Identities=36%  Similarity=0.641  Sum_probs=93.5

Q ss_pred             CCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Q 031662           51 KDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALS  130 (155)
Q Consensus        51 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  130 (155)
                      .+..|.||||+|+..++.+++++|++.+.+.+..+..|.+|++.|+..++.+++++|++.++.++..+..+.||+++|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            45678999999999999999999999999988899999999999999999999999999999899999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhcccCC
Q 031662          131 RGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus       131 ~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      .++.+++++|++++.+.+..+
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~  103 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARD  103 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccC
Confidence            999999999999986665444

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=6.2e-17  Score=113.86  Aligned_cols=119  Identities=29%  Similarity=0.362  Sum_probs=105.6

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHH
Q 031662           25 ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVA  104 (155)
Q Consensus        25 ~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  104 (155)
                      .|..|+-.|.+++|+.++..-.|+...+..|.|+||-|+..||.++++||++.|+++|..|..|+||||+|+..++..++
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            35678899999999999999888888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCcccC-CCCCCHHHHH--HHCCCHHHHHHHHHH
Q 031662          105 KKLVLSGANISVLN-SHEQTPIDEA--LSRGKMDIIDAINTA  143 (155)
Q Consensus       105 ~~Ll~~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~L~~~  143 (155)
                      +.|++.|+.+.... .++.|+...+  .+.|+.+|.+||..-
T Consensus       633 kqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  633 KQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            99999998876543 4567888755  356889999999754

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.72  E-value=9e-17  Score=112.85  Aligned_cols=132  Identities=27%  Similarity=0.415  Sum_probs=119.3

Q ss_pred             ccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCc
Q 031662           21 ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH  100 (155)
Q Consensus        21 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~  100 (155)
                      ...-.+.-|+..++.+-+..++..|+.++....+|.|++|.+|.-.+.+|+++++++|++|+..|..++||+|.|+..|+
T Consensus        39 ~~sa~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~  118 (527)
T KOG0505|consen   39 EDSAVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGY  118 (527)
T ss_pred             CchHHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhccccc
Confidence            34456888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCC-----------------------------------------------------------CcccCCCC
Q 031662          101 TEVAKKLVLSGAN-----------------------------------------------------------ISVLNSHE  121 (155)
Q Consensus       101 ~~~~~~Ll~~~~~-----------------------------------------------------------~~~~~~~~  121 (155)
                      ..++++|+.+|++                                                           .+.++..|
T Consensus       119 ~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG  198 (527)
T KOG0505|consen  119 LNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARG  198 (527)
T ss_pred             HHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccccccc
Confidence            9999999987652                                                           23455568


Q ss_pred             CCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662          122 QTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       122 ~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      -|.||.|+-.|+.++.++|++.|.+++++++
T Consensus       199 ~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~  229 (527)
T KOG0505|consen  199 ATALHVAAANGYTEVAALLLQAGYSVNIKDY  229 (527)
T ss_pred             chHHHHHHhhhHHHHHHHHHHhccCcccccc
Confidence            9999999999999999999999999987765

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.71  E-value=1.5e-16  Score=118.91  Aligned_cols=95  Identities=28%  Similarity=0.446  Sum_probs=88.9

Q ss_pred             HHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHH
Q 031662           58 ALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII  137 (155)
Q Consensus        58 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  137 (155)
                      .|+.|+..|+.+.+++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-------HhhcccCCC
Q 031662          138 DAINTA-------VAQLELGGF  152 (155)
Q Consensus       138 ~~L~~~-------g~~~~~~~~  152 (155)
                      ++|+++       |++....++
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~  186 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSF  186 (664)
T ss_pred             HHHHhCCCcccccCCCCCcccc
Confidence            999998       666655444

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.70  E-value=1.1e-16  Score=117.28  Aligned_cols=134  Identities=21%  Similarity=0.198  Sum_probs=114.9

Q ss_pred             CCccCCCcccHHHHHHHHHh---CCHHHHHHHHHcCCCC-----CCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCC
Q 031662           13 QTTETSSPENIDALLAAARY---DDIEDVISLASAGVPL-----DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS   84 (155)
Q Consensus        13 ~~~~~~~~~~~~~l~~A~~~---~~~~~v~~ll~~~~~~-----~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~   84 (155)
                      +..+.+...|-|.||.|.-.   ++-++++.|++.-+.+     ......|.|+||.|+.+.+.++++.|++.|+|++++
T Consensus       134 w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aR  213 (782)
T KOG3676|consen  134 WKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHAR  213 (782)
T ss_pred             hccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhH
Confidence            44455567899999999973   4558888888865432     223456999999999999999999999999998754


Q ss_pred             C-----------------------CCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHH
Q 031662           85 N-----------------------EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN  141 (155)
Q Consensus        85 ~-----------------------~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~  141 (155)
                      -                       ..|..||.+|+..++.+++++|+++|+|++.+|..|+|.||..+.+-..+|..+++
T Consensus       214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L  293 (782)
T KOG3676|consen  214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLAL  293 (782)
T ss_pred             hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHH
Confidence            1                       24778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhh
Q 031662          142 TAVAQ  146 (155)
Q Consensus       142 ~~g~~  146 (155)
                      ++|+.
T Consensus       294 ~~ga~  298 (782)
T KOG3676|consen  294 ELGAN  298 (782)
T ss_pred             hcCCC
Confidence            99998

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.69  E-value=1.5e-16  Score=81.73  Aligned_cols=54  Identities=33%  Similarity=0.570  Sum_probs=31.6

Q ss_pred             CCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHH
Q 031662           88 KNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN  141 (155)
Q Consensus        88 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~  141 (155)
                      |+||+|+|+..|+.+++++|+++|.+++.+|.+|+||+|+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456666666666666666666666666666666666666666666666666664

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.68  E-value=5.8e-17  Score=83.73  Aligned_cols=55  Identities=40%  Similarity=0.645  Sum_probs=27.1

Q ss_pred             HHhcC-CCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Q 031662           74 LIGRG-VDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA  128 (155)
Q Consensus        74 ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  128 (155)
                      |++++ .+++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|+||+++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            34555 67777777888888888888888888888877888888888888887765

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.67  E-value=3.8e-16  Score=80.20  Aligned_cols=54  Identities=50%  Similarity=0.826  Sum_probs=33.5

Q ss_pred             CccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHH
Q 031662           55 GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV  108 (155)
Q Consensus        55 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  108 (155)
                      |.|+||+|+..++.+++++|++.|.+++.+|..|.||+|+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456777777777777777777777777777777777777777777777776664

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=7.1e-16  Score=108.63  Aligned_cols=92  Identities=29%  Similarity=0.322  Sum_probs=86.4

Q ss_pred             HHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHH
Q 031662           59 LHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIID  138 (155)
Q Consensus        59 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  138 (155)
                      |.-|+..|.+++++.++..-.|+...+..|-|+||-|+..|++++++||++.|+++|..|.+||||||+|+.+++..+++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            55688899999999999988899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccC
Q 031662          139 AINTAVAQLELG  150 (155)
Q Consensus       139 ~L~~~g~~~~~~  150 (155)
                      .|++.|+-+...
T Consensus       634 qLVe~GaavfAs  645 (752)
T KOG0515|consen  634 QLVESGAAVFAS  645 (752)
T ss_pred             HHHhccceEEee
Confidence            999999877543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.63  E-value=3.8e-16  Score=80.64  Aligned_cols=55  Identities=40%  Similarity=0.678  Sum_probs=29.7

Q ss_pred             HHHcC-CCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q 031662           41 LASAG-VPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYA   95 (155)
Q Consensus        41 ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a   95 (155)
                      |++.+ .+++.+|..|.||||+|+.+++.+++++|++.|++++.+|..|+||+++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45666 77788888888888888888888888888888888888888888888876

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.60  E-value=4.7e-16  Score=117.61  Aligned_cols=131  Identities=31%  Similarity=0.416  Sum_probs=117.6

Q ss_pred             CcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHh
Q 031662           19 SPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA-SNEEKNTPLHYACL   97 (155)
Q Consensus        19 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~-~~~~~~t~l~~a~~   97 (155)
                      ..+--++|..||..|+.|++++|+.+|.++..+|..|.+||.+|+..+|..+++.|+++.++++. .|+.+.|+|.+||.
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacs  833 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACS  833 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecC
Confidence            34556789999999999999999999999999999999999999999999999999999888887 57888999999999


Q ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhccc
Q 031662           98 NGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLEL  149 (155)
Q Consensus        98 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~  149 (155)
                      .|+.+++++|+..|+.-..++-...|||.+|..-|+.+++..|+..|+.++.
T Consensus       834 ggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInS  885 (2131)
T KOG4369|consen  834 GGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINS  885 (2131)
T ss_pred             CCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhccccccc
Confidence            9999999999999999988998999999999999999999999999977753

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.58  E-value=4.6e-14  Score=92.55  Aligned_cols=101  Identities=37%  Similarity=0.534  Sum_probs=93.4

Q ss_pred             CCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCc-----HHHHHHHHHcCC---CCcccCCCC
Q 031662           50 SKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH-----TEVAKKLVLSGA---NISVLNSHE  121 (155)
Q Consensus        50 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~Ll~~~~---~~~~~~~~~  121 (155)
                      ..+..+.++++.++..+....+++++..+.+++.++..|.||+|+|+..++     .+++++|++.|+   ..+.++..|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            345567899999999999999999999999999999999999999999999     999999999999   566679999


Q ss_pred             CCHHHHHHHCCCHHHHHHHHHHHhhcccC
Q 031662          122 QTPIDEALSRGKMDIIDAINTAVAQLELG  150 (155)
Q Consensus       122 ~t~l~~a~~~~~~~~~~~L~~~g~~~~~~  150 (155)
                      +||+|+|+..|+.+++++|++.|++++..
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~  176 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSR  176 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCccc
Confidence            99999999999999999999999988765

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.53  E-value=2.2e-14  Score=94.54  Aligned_cols=101  Identities=20%  Similarity=0.254  Sum_probs=91.2

Q ss_pred             ccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCC-CCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC
Q 031662           10 NRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSK-DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK   88 (155)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~   88 (155)
                      ....+++..+.+|+++|..|+.+|+.++++.+++.|+|+|.. ++.+.||||+|+..|+.++.+.|++.|+.....+.-|
T Consensus        33 s~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvg  112 (396)
T KOG1710|consen   33 STVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVG  112 (396)
T ss_pred             HHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchh
Confidence            334557788999999999999999999999999999999865 5669999999999999999999999999999999999


Q ss_pred             CCHHHHHHhcCcHHHHHHHHHc
Q 031662           89 NTPLHYACLNGHTEVAKKLVLS  110 (155)
Q Consensus        89 ~t~l~~a~~~~~~~~~~~Ll~~  110 (155)
                      +|+-..|+.-|+.+++..+-.+
T Consensus       113 rTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen  113 RTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             hhHHHHHHHhcchHHHHHHhcc
Confidence            9999999999999998866543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.52  E-value=1.4e-14  Score=109.93  Aligned_cols=143  Identities=22%  Similarity=0.269  Sum_probs=128.9

Q ss_pred             ccccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCC
Q 031662            8 SINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDS-KDSQGRTALHMASANGHLGIVEYLIGRGVDINASNE   86 (155)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~   86 (155)
                      .+.+|.+...+++.|.+||..|+..|+..+|+.|+++.++++. .|+.+.|+|.+||..++.+.++.|+..|+.-..++-
T Consensus       776 lv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnv  855 (2131)
T KOG4369|consen  776 LVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNV  855 (2131)
T ss_pred             HHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccch
Confidence            4567888899999999999999999999999999999999875 467799999999999999999999999999888888


Q ss_pred             CCCCHHHHHHhcCcHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccC
Q 031662           87 EKNTPLHYACLNGHTEVAKKLVLSGANISVL--NSHEQTPIDEALSRGKMDIIDAINTAVAQLELG  150 (155)
Q Consensus        87 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~--~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~  150 (155)
                      ...|||.+|...|.++++..|+..|++++.+  ...|..||.+|...|+...++.|++.|.|++..
T Consensus       856 sDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaq  921 (2131)
T KOG4369|consen  856 SDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQ  921 (2131)
T ss_pred             hhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccc
Confidence            8899999999999999999999999888776  456789999999999999999999999888743

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.36  E-value=2.8e-12  Score=89.74  Aligned_cols=90  Identities=33%  Similarity=0.474  Sum_probs=54.2

Q ss_pred             ccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHhcC
Q 031662           21 ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGR-GVDINASNEEKNTPLHYACLNG   99 (155)
Q Consensus        21 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~t~l~~a~~~~   99 (155)
                      .+...+.+|++.|++..++.+.-+|.+++.+|.+.+|+||.|+..|+.++++||++. +.+++.+|++|+|||.-|..++
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            444455666666666666666666666666666666666666666666666666654 4555566666666666666666


Q ss_pred             cHHHHHHHHHc
Q 031662          100 HTEVAKKLVLS  110 (155)
Q Consensus       100 ~~~~~~~Ll~~  110 (155)
                      +.+++++|.+.
T Consensus       585 h~~v~k~L~~~  595 (622)
T KOG0506|consen  585 HKEVVKLLEEA  595 (622)
T ss_pred             cHHHHHHHHHH
Confidence            66666655544

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.34  E-value=8.8e-12  Score=89.30  Aligned_cols=120  Identities=24%  Similarity=0.342  Sum_probs=109.6

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCC--CCCCCCCCCCHHHHHHhcCcHH
Q 031662           25 ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD--INASNEEKNTPLHYACLNGHTE  102 (155)
Q Consensus        25 ~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~t~l~~a~~~~~~~  102 (155)
                      .+..|+..+++-.+.....+|.++-.++....+.||+|+..|+-+++++++++|..  .++.+..|.|+||-|+..++..
T Consensus       869 eil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  869 EILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            36788888888888888888888888999999999999999999999999999854  5677899999999999999999


Q ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHH
Q 031662          103 VAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAV  144 (155)
Q Consensus       103 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g  144 (155)
                      ++.+|++.|+++...|..|.||-.-|-+.|..+++-||-++.
T Consensus       949 vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  949 VCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            999999999999999999999999999999999999998764

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.31  E-value=5.4e-12  Score=88.33  Aligned_cols=93  Identities=23%  Similarity=0.339  Sum_probs=85.8

Q ss_pred             CCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHCC
Q 031662           54 QGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLS-GANISVLNSHEQTPIDEALSRG  132 (155)
Q Consensus        54 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~  132 (155)
                      .+...+++|++.|++..++.+.-.|.+++.+|...+|+||.|+..|+.+++++|++. +.+++.+|.+|+|||+-|...+
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            355679999999999999999888999999999999999999999999999999965 6889999999999999999999


Q ss_pred             CHHHHHHHHHHHhh
Q 031662          133 KMDIIDAINTAVAQ  146 (155)
Q Consensus       133 ~~~~~~~L~~~g~~  146 (155)
                      |.+++++|.+....
T Consensus       585 h~~v~k~L~~~~~~  598 (622)
T KOG0506|consen  585 HKEVVKLLEEAQYP  598 (622)
T ss_pred             cHHHHHHHHHHhcc
Confidence            99999999887653

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.27  E-value=5.9e-11  Score=83.65  Aligned_cols=90  Identities=29%  Similarity=0.372  Sum_probs=80.6

Q ss_pred             HHHHHHhCCCHHHHHHHHhcCCCCCCCC-CCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHH
Q 031662           58 ALHMASANGHLGIVEYLIGRGVDINASN-EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI  136 (155)
Q Consensus        58 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  136 (155)
                      -||-+++.++.+..-.|+..|+++|..+ ..|.||||.|+..|+..-+++|+-+|+++...|.+|.||+.+|...||-++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            4888999999998888889999999865 578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 031662          137 IDAINTAVAQL  147 (155)
Q Consensus       137 ~~~L~~~g~~~  147 (155)
                      .+-|++..-++
T Consensus       216 aeRl~e~~y~v  226 (669)
T KOG0818|consen  216 AERLVEIQYEL  226 (669)
T ss_pred             HHHHHHHHHHH
Confidence            99888775443

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.24  E-value=5.8e-12  Score=93.49  Aligned_cols=99  Identities=22%  Similarity=0.369  Sum_probs=83.7

Q ss_pred             hCCHHHHHHHHH-cCCC-CCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHhcCcHHHHHHHH
Q 031662           32 YDDIEDVISLAS-AGVP-LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNE-EKNTPLHYACLNGHTEVAKKLV  108 (155)
Q Consensus        32 ~~~~~~v~~ll~-~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll  108 (155)
                      ++...-++-++. .+.+ .|.+|..|+++||.++..+...+++||+++|+++..+|. .|.||||-|+..|+++++-.|+
T Consensus        27 Ks~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL  106 (1267)
T KOG0783|consen   27 KSEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLL  106 (1267)
T ss_pred             cCChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHH
Confidence            344433444444 3333 477899999999999999999999999999999998886 7899999999999999999999


Q ss_pred             HcCCCCcccCCCCCCHHHHHHH
Q 031662          109 LSGANISVLNSHEQTPIDEALS  130 (155)
Q Consensus       109 ~~~~~~~~~~~~~~t~l~~a~~  130 (155)
                      .+|..+.+.|..|..||+..++
T Consensus       107 ~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  107 SKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             hcCCceEEecccCCCHHHHHhh
Confidence            9999999999999999998877

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.23  E-value=1.2e-10  Score=82.20  Aligned_cols=85  Identities=32%  Similarity=0.452  Sum_probs=79.2

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCCCCCCC-CccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHH
Q 031662           25 ALLAAARYDDIEDVISLASAGVPLDSKDSQ-GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEV  103 (155)
Q Consensus        25 ~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  103 (155)
                      .||..++.|+++..--|+..|++.|..+.. |.||||.|++.|+.--+++|+-+|++++.+|..|+||+.+|-..|+.++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            489999999999999999999999988765 9999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHH
Q 031662          104 AKKLVL  109 (155)
Q Consensus       104 ~~~Ll~  109 (155)
                      .+-|++
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            776665

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.18  E-value=1.7e-10  Score=82.70  Aligned_cols=90  Identities=32%  Similarity=0.444  Sum_probs=68.6

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCC----CCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCc
Q 031662           25 ALLAAARYDDIEDVISLASAGVPL----DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH  100 (155)
Q Consensus        25 ~l~~A~~~~~~~~v~~ll~~~~~~----~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~  100 (155)
                      .|..|+...++..+-.|+.+|...    ...+.+|.|+||+||+.++..+.++|+-+|+++..+|..|+|+|++|-+.|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            466677777788888888876432    2345667888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCCCC
Q 031662          101 TEVAKKLVLSGANI  114 (155)
Q Consensus       101 ~~~~~~Ll~~~~~~  114 (155)
                      -+|++.|+++|+..
T Consensus       707 qec~d~llq~gcp~  720 (749)
T KOG0705|consen  707 QECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHHcCCCc
Confidence            88888888887653

>PF13606 Ank_3: Ankyrin repeat

Probab=99.16  E-value=3.8e-11  Score=53.53  Aligned_cols=29  Identities=24%  Similarity=0.402  Sum_probs=19.0

Q ss_pred             CCCCHHHHHHHCCCHHHHHHHHHHHhhcc
Q 031662          120 HEQTPIDEALSRGKMDIIDAINTAVAQLE  148 (155)
Q Consensus       120 ~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  148 (155)
                      +|+||||+|+..|+.+++++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            35666666666666666666666666654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.13  E-value=6.1e-10  Score=83.00  Aligned_cols=126  Identities=21%  Similarity=0.229  Sum_probs=104.6

Q ss_pred             CcccHHHHHHHHHhCCHHHHHHHHHcC----CCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q 031662           19 SPENIDALLAAARYDDIEDVISLASAG----VPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY   94 (155)
Q Consensus        19 ~~~~~~~l~~A~~~~~~~~v~~ll~~~----~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~   94 (155)
                      ...+.-.+..|++.|+.-.|+..++..    .++|..|..|.++++.|+...+.++.++|++....+       ..+|.+
T Consensus        22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~   94 (822)
T KOG3609|consen   22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLL   94 (822)
T ss_pred             cchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHH
Confidence            344555678999999999999988854    467889999999999999999999999999986554       338999


Q ss_pred             HHhcCcHHHHHHHHHcCCCC----------cccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           95 ACLNGHTEVAKKLVLSGANI----------SVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        95 a~~~~~~~~~~~Ll~~~~~~----------~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      |+..|..+.++.++.+-...          ...-..+.||+.+|+..+++||++.|+++|+++..+.
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence            99999999999999763221          1233456899999999999999999999999987654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.09  E-value=6.6e-10  Score=78.95  Aligned_cols=86  Identities=30%  Similarity=0.409  Sum_probs=55.4

Q ss_pred             HHHHHHhCCCHHHHHHHHh--cCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHH
Q 031662           58 ALHMASANGHLGIVEYLIG--RGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMD  135 (155)
Q Consensus        58 ~l~~a~~~~~~~~~~~ll~--~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  135 (155)
                      ++|+++.....+-+...+.  ....++.+|..|.||||+|+..|+.+.++.|+..|+++..++..||+||+.|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            4666666665544333222  23456666667777777777777777777777777777777777777777777777766


Q ss_pred             HHHHHHHH
Q 031662          136 IIDAINTA  143 (155)
Q Consensus       136 ~~~~L~~~  143 (155)
                      ++.-++.+
T Consensus       103 ~i~~vlr~  110 (560)
T KOG0522|consen  103 IITEVLRH  110 (560)
T ss_pred             HHHHHHHH
Confidence            66555544

>PF13606 Ank_3: Ankyrin repeat

Probab=99.09  E-value=2.4e-10  Score=50.91  Aligned_cols=28  Identities=46%  Similarity=0.720  Sum_probs=19.5

Q ss_pred             CCCHHHHHHhcCcHHHHHHHHHcCCCCc
Q 031662           88 KNTPLHYACLNGHTEVAKKLVLSGANIS  115 (155)
Q Consensus        88 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~  115 (155)
                      |+||||+|+..|+.+++++|+++|++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5677777777777777777777766665

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.05  E-value=8.5e-10  Score=79.21  Aligned_cols=91  Identities=23%  Similarity=0.262  Sum_probs=78.5

Q ss_pred             HHHHHhCCCHHHHHHHHhcCCCCCC----CCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCH
Q 031662           59 LHMASANGHLGIVEYLIGRGVDINA----SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKM  134 (155)
Q Consensus        59 l~~a~~~~~~~~~~~ll~~~~~~~~----~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  134 (155)
                      |.-|+...+...+-.|+.+|.....    -+..|+|+||+|+..|+..+.++|+=+|+++..+|..|.|+|.+|...|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            4556666778888888888755332    345779999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccc
Q 031662          135 DIIDAINTAVAQLEL  149 (155)
Q Consensus       135 ~~~~~L~~~g~~~~~  149 (155)
                      +|+.+|+.+|+..+-
T Consensus       708 ec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  708 ECIDVLLQYGCPDEC  722 (749)
T ss_pred             HHHHHHHHcCCCccc
Confidence            999999999987653

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.03  E-value=1.6e-10  Score=86.05  Aligned_cols=82  Identities=22%  Similarity=0.275  Sum_probs=76.4

Q ss_pred             cCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC-CccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q 031662           16 ETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQ-GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY   94 (155)
Q Consensus        16 ~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~   94 (155)
                      +..+..|.++||+++..+..+++++|+++|.++..+|.. |+|+||-|+++|+++++-.|+.+|.....+|+.|..||..
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~  125 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQF  125 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHH
Confidence            455678999999999999999999999999999999976 9999999999999999999999999999999999999988


Q ss_pred             HHh
Q 031662           95 ACL   97 (155)
Q Consensus        95 a~~   97 (155)
                      -++
T Consensus       126 ~~r  128 (1267)
T KOG0783|consen  126 LSR  128 (1267)
T ss_pred             Hhh
Confidence            665

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.03  E-value=6.9e-10  Score=50.74  Aligned_cols=28  Identities=50%  Similarity=0.865  Sum_probs=11.6

Q ss_pred             CCHHHHHHhcCcHHHHHHHHHcCCCCcc
Q 031662           89 NTPLHYACLNGHTEVAKKLVLSGANISV  116 (155)
Q Consensus        89 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  116 (155)
                      .||||+|+..++.+++++|+++|++++.
T Consensus         3 ~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    3 NTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             BBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            3444444444444444444444444433

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.00  E-value=1.1e-09  Score=50.04  Aligned_cols=31  Identities=48%  Similarity=0.774  Sum_probs=21.4

Q ss_pred             CccHHHHHHhCCCHHHHHHHHhcCCCCCCCC
Q 031662           55 GRTALHMASANGHLGIVEYLIGRGVDINASN   85 (155)
Q Consensus        55 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~   85 (155)
                      |.||||+|+..++.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5667777777777777777777777666654

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.87  E-value=4.9e-09  Score=75.61  Aligned_cols=94  Identities=26%  Similarity=0.345  Sum_probs=85.5

Q ss_pred             CCCcccHHHHHHHHHhCCHHHHHHHHHcCCC--CCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q 031662           17 TSSPENIDALLAAARYDDIEDVISLASAGVP--LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY   94 (155)
Q Consensus        17 ~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~   94 (155)
                      .+..+..+.||+|++.|+-++|+|++++++.  ++..+..|.|+||.|+..++..++++|++.|+.....|..|.||-.-
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~er  973 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQER  973 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHH
Confidence            3456778999999999999999999999863  46678899999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHHHHc
Q 031662           95 ACLNGHTEVAKKLVLS  110 (155)
Q Consensus        95 a~~~~~~~~~~~Ll~~  110 (155)
                      |-..|+.+++.||-.+
T Consensus       974 aqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  974 AQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHhcCCchHHHHHhhh
Confidence            9999999999998754

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.86  E-value=1.3e-08  Score=72.51  Aligned_cols=87  Identities=28%  Similarity=0.417  Sum_probs=74.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHHc--CCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcH
Q 031662           24 DALLAAARYDDIEDVISLASA--GVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHT  101 (155)
Q Consensus        24 ~~l~~A~~~~~~~~v~~ll~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~  101 (155)
                      -|+|.+....+.+-+...+..  ...++.+|..|.||||.|+..|+...++.|+..++++..++..|++|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            458999988888777664443  356778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc
Q 031662          102 EVAKKLVLS  110 (155)
Q Consensus       102 ~~~~~Ll~~  110 (155)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            888777643

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.85  E-value=4.2e-09  Score=79.94  Aligned_cols=91  Identities=34%  Similarity=0.527  Sum_probs=84.1

Q ss_pred             CCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCC
Q 031662           53 SQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRG  132 (155)
Q Consensus        53 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  132 (155)
                      ..|.+++|.|+.++...+.++|+++|+++|..|..|++|+|.+...|+...+..|+++|++.+..+..+.+|+++|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             CHHHHHHHHHH
Q 031662          133 KMDIIDAINTA  143 (155)
Q Consensus       133 ~~~~~~~L~~~  143 (155)
                      +.+.+-++...
T Consensus       734 ~~d~~~l~~l~  744 (785)
T KOG0521|consen  734 NADIVLLLRLA  744 (785)
T ss_pred             cccHHHHHhhh
Confidence            77777666443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.83  E-value=1.1e-08  Score=78.00  Aligned_cols=136  Identities=19%  Similarity=0.175  Sum_probs=104.7

Q ss_pred             ccCCCcccHHHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHhCCCHHHHHHH-HhcCCCCCCCCCCCCCHH
Q 031662           15 TETSSPENIDALLAAARYDDIEDVISLASA-GVPLDSKDSQGRTALHMASANGHLGIVEYL-IGRGVDINASNEEKNTPL   92 (155)
Q Consensus        15 ~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l-l~~~~~~~~~~~~~~t~l   92 (155)
                      .......+++.+|+++..+..-.++.+++- +......|..+...+|+++.. +.++.-.+ .-.|..++.+|..|+|||
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~l-g~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAAL-GYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhc-CCceeEEEEeecccccccccCCCCccc
Confidence            345567889999999999999999999885 554455667777788885544 44443333 345888999999999999


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCC------cccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           93 HYACLNGHTEVAKKLVLSGANI------SVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        93 ~~a~~~~~~~~~~~Ll~~~~~~------~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      |||+.+|+..++..|++.|++.      ....-.|.|+..+|...|+..+..+|.++.-.....+
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~~L~~~~~~  710 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEKALSAHLSN  710 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhhHHHHHHhh
Confidence            9999999999999999877543      3334468899999999999999999988754443333

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.79  E-value=3.1e-08  Score=68.26  Aligned_cols=71  Identities=24%  Similarity=0.307  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Q 031662           23 IDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLH   93 (155)
Q Consensus        23 ~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~   93 (155)
                      .-.|+.||+.|+++.|++|++.|.++|.+|....+||.+|+..||.+.+++|+++|+--+.-...|...++
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Y  107 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHY  107 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhh
Confidence            45689999999999999999999999999999999999999999999999999999866554455554433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.71  E-value=8.4e-08  Score=60.19  Aligned_cols=70  Identities=24%  Similarity=0.339  Sum_probs=57.8

Q ss_pred             CCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCC
Q 031662           45 GVPLDSKDSQGRTALHMASANGHLGIVEYLIGRG-VDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANI  114 (155)
Q Consensus        45 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~  114 (155)
                      +.++|.+|..|||+++.|+..+..+.+.||+.+| +.+...|..+.+++.+|-..|..+++..|.+.-.+-
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            4577888888888888888888888888888888 788888888888888888888888888888764443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.68  E-value=1.1e-07  Score=65.71  Aligned_cols=67  Identities=33%  Similarity=0.412  Sum_probs=58.3

Q ss_pred             HHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCH
Q 031662           58 ALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTP  124 (155)
Q Consensus        58 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~  124 (155)
                      -|..||+.|+.+.++.|++.|.++|..|.+...||.+|+..|+.+++++|+++|+--.--...|.-+
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC  105 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC  105 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh
Confidence            5789999999999999999999999999999999999999999999999999997544333344444

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.56  E-value=4e-07  Score=57.23  Aligned_cols=75  Identities=19%  Similarity=0.162  Sum_probs=65.5

Q ss_pred             CCccCCCcccHHHHHHHHHhCCHHHHHHHHHcC-CCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCC
Q 031662           13 QTTETSSPENIDALLAAARYDDIEDVISLASAG-VPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEE   87 (155)
Q Consensus        13 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~   87 (155)
                      .+.+..+..|+|++.+|+..|+.+.+.+|+++| +.+...|..+.+.+-+|-+.|..++++.|.+...+-...+..
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~ns   78 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNS   78 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccC
Confidence            456778899999999999999999999999999 888899999999999999999999999999885555444443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.52  E-value=1.2e-07  Score=72.32  Aligned_cols=88  Identities=32%  Similarity=0.384  Sum_probs=80.3

Q ss_pred             cccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Q 031662           20 PENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNG   99 (155)
Q Consensus        20 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~   99 (155)
                      ..|.++||.|+..+....+++|++.|.++|..|..|.+|+|.+...|+......++++|++.++.+..|..++.+|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            46689999999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             cHHHHHHH
Q 031662          100 HTEVAKKL  107 (155)
Q Consensus       100 ~~~~~~~L  107 (155)
                      +.+.+-++
T Consensus       734 ~~d~~~l~  741 (785)
T KOG0521|consen  734 NADIVLLL  741 (785)
T ss_pred             cccHHHHH
Confidence            65555443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.49  E-value=6.9e-07  Score=67.26  Aligned_cols=105  Identities=23%  Similarity=0.153  Sum_probs=84.8

Q ss_pred             CCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCC----------
Q 031662           13 QTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDIN----------   82 (155)
Q Consensus        13 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~----------   82 (155)
                      -+.+..+.-|.++|++|+...+.+++++|++.....       ..+|.+|+..+..+.++.++.+-....          
T Consensus        53 lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~  125 (822)
T KOG3609|consen   53 LNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANS  125 (822)
T ss_pred             cchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCc
Confidence            456778899999999999999999999999987654       248999999999999999998632221          


Q ss_pred             CCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCH
Q 031662           83 ASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTP  124 (155)
Q Consensus        83 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~  124 (155)
                      ..-....||+.+||..++.|+++.|+++|+.+..+......+
T Consensus       126 ~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~~~C~C  167 (822)
T KOG3609|consen  126 PHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHDIRCEC  167 (822)
T ss_pred             ccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcccccCc
Confidence            112345699999999999999999999999887665544333

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.32  E-value=4e-07  Score=69.77  Aligned_cols=98  Identities=15%  Similarity=0.149  Sum_probs=77.9

Q ss_pred             CCCCCccHHHHHHhCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Q 031662           51 KDSQGRTALHMASANGHLGIVEYLIGR-GVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEAL  129 (155)
Q Consensus        51 ~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~  129 (155)
                      ....|.+.+|+++..+...+++.+++- +......|..+...+|+|+..|..-.+....-.|..++++|..||||||+|.
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa  649 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAA  649 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHh
Confidence            445678999999999999899988885 5555566777888888866555433333333568889999999999999999


Q ss_pred             HCCCHHHHHHHHHHHhhcc
Q 031662          130 SRGKMDIIDAINTAVAQLE  148 (155)
Q Consensus       130 ~~~~~~~~~~L~~~g~~~~  148 (155)
                      ..|+..++.-|..-|++-.
T Consensus       650 ~~G~e~l~a~l~~lga~~~  668 (975)
T KOG0520|consen  650 FRGREKLVASLIELGADPG  668 (975)
T ss_pred             hcCHHHHHHHHHHhccccc
Confidence            9999999999998877643

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.89  E-value=5.5e-05  Score=54.35  Aligned_cols=71  Identities=21%  Similarity=0.203  Sum_probs=55.3

Q ss_pred             HHHHHHHHhcCCCCCC------CCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHH
Q 031662           68 LGIVEYLIGRGVDINA------SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN  141 (155)
Q Consensus        68 ~~~~~~ll~~~~~~~~------~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~  141 (155)
                      ...+++|.+++.+.|.      .+.--.|+||+|+..|..+++.+|++.|+|+...|..|.||+.++.   +.++=..++
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F~  480 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIFI  480 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHHH
Confidence            5678888888766643      2344568999999999999999999999999999999999998776   344444444

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.78  E-value=7.3e-05  Score=53.77  Aligned_cols=66  Identities=21%  Similarity=0.285  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHcCCCCCC------CCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Q 031662           33 DDIEDVISLASAGVPLDS------KDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN   98 (155)
Q Consensus        33 ~~~~~v~~ll~~~~~~~~------~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~   98 (155)
                      .-...+++|.+++...|.      .+..-.|+||+|+..+..+++.++++.|+|+..+|..|+||+.++...
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nk  473 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANK  473 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccH
Confidence            446778888888765543      344467999999999999999999999999999999999999998733

>smart00248 ANK ankyrin repeats

Probab=97.68  E-value=7.6e-05  Score=31.79  Aligned_cols=25  Identities=20%  Similarity=0.399  Sum_probs=12.5

Q ss_pred             CCCHHHHHHHCCCHHHHHHHHHHHh
Q 031662          121 EQTPIDEALSRGKMDIIDAINTAVA  145 (155)
Q Consensus       121 ~~t~l~~a~~~~~~~~~~~L~~~g~  145 (155)
                      +.||+++++..++.++++.|+++|.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3445555555555555555554444

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.58  E-value=0.00022  Score=30.25  Aligned_cols=26  Identities=50%  Similarity=0.654  Sum_probs=14.5

Q ss_pred             CCCHHHHHHhcCcHHHHHHHHHcCCC
Q 031662           88 KNTPLHYACLNGHTEVAKKLVLSGAN  113 (155)
Q Consensus        88 ~~t~l~~a~~~~~~~~~~~Ll~~~~~  113 (155)
                      +.+|+++++..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            34555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=97.40  E-value=0.0018  Score=42.37  Aligned_cols=114  Identities=13%  Similarity=0.165  Sum_probs=76.9

Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCH------HHHHHhcC
Q 031662           26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTP------LHYACLNG   99 (155)
Q Consensus        26 l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~------l~~a~~~~   99 (155)
                      |--|+...+.+.+..++....+       -.+++.++...+..+++-+|+..- ....+|-....+      ..+....-
T Consensus       157 ledAV~AsN~~~i~~~VtdKkd-------A~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a  228 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKKD-------AHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSA  228 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchHH-------HHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCC
Confidence            5667777777777666554321       245777888777788888888641 222222211111      22233445


Q ss_pred             cHHHHHHHHHcC-CCCcc---cCCCCCCHHHHHHHCCCHHHHHHHHHHHhhc
Q 031662          100 HTEVAKKLVLSG-ANISV---LNSHEQTPIDEALSRGKMDIIDAINTAVAQL  147 (155)
Q Consensus       100 ~~~~~~~Ll~~~-~~~~~---~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~  147 (155)
                      +..++++++++| +++|.   +-+.|.|.|+-|++.++.+++.+|+.+|+-.
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            677889999888 55543   4678999999999999999999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.01  E-value=0.01  Score=37.75  Aligned_cols=46  Identities=17%  Similarity=0.235  Sum_probs=35.7

Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHH
Q 031662           91 PLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINT  142 (155)
Q Consensus        91 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~  142 (155)
                      -|.+|+..|-.+++--.+++|.+++.      +.|..|+...+-.++.+++.
T Consensus       146 hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  146 HLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            35678888888888888888877663      68888888888888887764

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.42  E-value=0.041  Score=36.30  Aligned_cols=94  Identities=20%  Similarity=0.223  Sum_probs=67.8

Q ss_pred             cccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCC----CCCccHHHHHHh--CCCHHHHHHHHhcC-CCCCC---CCCCCC
Q 031662           20 PENIDALLAAARYDDIEDVISLASAGVPLDSKD----SQGRTALHMASA--NGHLGIVEYLIGRG-VDINA---SNEEKN   89 (155)
Q Consensus        20 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~----~~~~~~l~~a~~--~~~~~~~~~ll~~~-~~~~~---~~~~~~   89 (155)
                      ..-.++|-.++.++..+++.+|+++- +.+..|    ..+..-+.|+..  ..+..+++.++.+| +++|.   +-..|.
T Consensus       177 kdA~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGd  255 (284)
T PF06128_consen  177 KDAHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGD  255 (284)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcc
Confidence            34567888899889999999998863 111111    122234455443  34678899999987 55664   356899


Q ss_pred             CHHHHHHhcCcHHHHHHHHHcCCCC
Q 031662           90 TPLHYACLNGHTEVAKKLVLSGANI  114 (155)
Q Consensus        90 t~l~~a~~~~~~~~~~~Ll~~~~~~  114 (155)
                      |.|.-|...++.+++.+|+++|+-.
T Consensus       256 tMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  256 TMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             hHHHhHHhcCcHHHHHHHHHcCccc
Confidence            9999999999999999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.53  E-value=0.039  Score=29.99  Aligned_cols=47  Identities=23%  Similarity=0.352  Sum_probs=34.3

Q ss_pred             cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHc
Q 031662           57 TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLS  110 (155)
Q Consensus        57 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  110 (155)
                      ..+..|+..|+.++++.+++.+ .++      ...+..|+...+-+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            4577888888888888887654 121      3467888888888888888865

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.69  E-value=0.13  Score=27.90  Aligned_cols=48  Identities=19%  Similarity=0.103  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhc
Q 031662           23 IDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGR   77 (155)
Q Consensus        23 ~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~   77 (155)
                      ...+..|+..|+.++++.+++.+ .++      ...+..|+..-+-++++||++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            34589999999999999999765 221      3479999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=90.88  E-value=0.72  Score=29.63  Aligned_cols=81  Identities=19%  Similarity=0.119  Sum_probs=52.1

Q ss_pred             HHHHHHHHHhCCHHHHHH----HHHcCCCCCCCCCC--CccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Q 031662           23 IDALLAAARYDDIEDVIS----LASAGVPLDSKDSQ--GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYAC   96 (155)
Q Consensus        23 ~~~l~~A~~~~~~~~v~~----ll~~~~~~~~~~~~--~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~   96 (155)
                      .+.+-+|....+++....    ++.....-...|..  -..-|..|+..|-...+...+++|.+++.      +++..|+
T Consensus       105 ~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av  178 (192)
T PF03158_consen  105 EDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAV  178 (192)
T ss_pred             hhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHH
Confidence            345677888888766543    34433222112211  12346678888888888888888876653      5888888


Q ss_pred             hcCcHHHHHHHHH
Q 031662           97 LNGHTEVAKKLVL  109 (155)
Q Consensus        97 ~~~~~~~~~~Ll~  109 (155)
                      ..++..++.+++.
T Consensus       179 ~ynhRkIL~yfi~  191 (192)
T PF03158_consen  179 KYNHRKILDYFIR  191 (192)
T ss_pred             HhhHHHHHHHhhc
Confidence            8888888887763

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	155
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-19
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-18
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-18
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-17
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-17
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-17
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		8e-17
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-16
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-16
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		6e-16
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-16
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		7e-16
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-15
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		4e-15
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		5e-15
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		5e-15
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		7e-15
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		7e-15
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		8e-15
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		8e-15
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		8e-15
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-14
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-14
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-14
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-14
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-14
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-14
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-14
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-14
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		6e-14
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		8e-14
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-13
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-13
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		4e-13
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-13
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		5e-13
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-13
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		6e-13
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		7e-13
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		8e-13
1uoh_A	226	Human Gankyrin Length = 226		9e-13
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		9e-13
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-12
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-12
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-11
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-11
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-11
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-11
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		8e-11
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		3e-10
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		4e-09
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		2e-08
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		4e-08
2xen_A	91	Structural Determinants For Improved Thermal Stabil		5e-08
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-06
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		5e-08
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		7e-08
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		7e-08
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		8e-08
1ycs_B	239	P53-53bp2 Complex Length = 239		8e-08
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-07
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-06
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		1e-07
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		2e-07
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		4e-07
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		7e-07
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		8e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-06
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-06
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		1e-06
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		1e-06
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		4e-06
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		4e-06
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		4e-06
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		9e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		9e-06
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		1e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		1e-05
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		1e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-05
3so8_A	162	Crystal Structure Of Ankra Length = 162		1e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		1e-05
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		2e-05
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		4e-05
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		4e-05
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		4e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		5e-05
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		5e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		6e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		6e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		6e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		7e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		8e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		2e-04
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		5e-04
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		9e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 89.0 bits (219), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 70/123 (56%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           L  AA+    E V  L S G  +++KDS GRT LH A+  GH  IV+ LI +G D+NA +
Sbjct: 41  LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 100
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA 145
            +  TPLHYA   GH E+ K L+  GA+++  +S  +TP+D A   G  +I+  +     
Sbjct: 101 SDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Query: 146 QLE 148
            LE
Sbjct: 161 WLE 163

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 71/123 (57%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           L  AA     E V  L S G  +++KDS GRT LH A+ NGH  +V+ LI +G D+NA +
Sbjct: 41  LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 100
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA 145
            +  TPLH+A  NGH EV K L+  GA+++  +S  +TP+D A   G  +++  +     
Sbjct: 101 SDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Query: 146 QLE 148
            LE
Sbjct: 161 WLE 163

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 70/112 (62%)
Query: 29  AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
           AAR   +E V  L  AG  +++KD  GRT LH+A+ NGHL +V+ L+  G D+NA ++  
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 89  NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
            TPLH A  NGH EV K L+ +GA+++  + + +TP+  A   G ++++  +
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 72/122 (59%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  +++KD  G T LH+A+  GHL IVE L+  G D+NA +
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA 145
           ++  TPLH A   GH E+ + L+ +GA+++  +    TP+  A   G ++I++ +  A A
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 146 QL 147
            +
Sbjct: 126 DV 127

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 78/148 (52%), Gaps = 8/148 (5%)
Query: 1   MEQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALH 60
           +E  ADP+      ++  +P     L  AA     E V  L S G   ++KDS GRT LH
Sbjct: 24  LENGADPN---ASDSDGRTP-----LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLH 75
Query: 61  MASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSH 120
            A+ NGH  IV+ L+ +G D NA + +  TPLHYA  NGH E+ K L+  GA+ +  +S 
Sbjct: 76  YAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSD 135
Query: 121 EQTPIDEALSRGKMDIIDAINTAVAQLE 148
            +TP+D A   G  +I+  +      LE
Sbjct: 136 GRTPLDLAREHGNEEIVKLLEKQGGWLE 163

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 72/122 (59%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  +++KD  G T LH+A+  GHL IVE L+  G D+NA +
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA 145
           ++  TPLH A   GH E+ + L+ +GA+++  +    TP+  A   G ++I++ +  A A
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 146 QL 147
            +
Sbjct: 126 DV 127

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 74/115 (64%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  ++++D  G+T LH+A+  GHL IVE L+  G D+NA++
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
           +  +TPLH A L GH E+ + L+ +GA+++  +++  TP+  A   G ++I++ +
Sbjct: 78  KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 70/115 (60%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  ++++D  G T LH+A+  GHL IVE L+  G D+NA +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
               TPLH A   GH E+ + L+ +GA+++  +SH  TP+  A  RG ++I++ +
Sbjct: 78  SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 67/120 (55%)
Query: 29  AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
           AA     E V  L S G   ++KDS G+T LH+A+ NGH  +V+ L+ +G D NA + + 
Sbjct: 44  AAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 103
Query: 89  NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLE 148
            TPLH A  NGH EV K L+  GA+ +  +S  +TP+D A   G  +++  +      LE
Sbjct: 104 KTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 72/122 (59%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  +++KD  G T LH+A+  GHL IVE L+  G D+NA +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA 145
           ++  TPLH A   GH E+ + L+ +GA+++  +    TP+  A   G ++I++ +  A A
Sbjct: 78  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 146 QL 147
            +
Sbjct: 138 DV 139

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 70/115 (60%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  +++ D QG T LH+A+  GH  IVE L+  G D+NA +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
            +  TPLH A  NGH E+ + L+  GA+++  +++  TP+  A  RG ++I++ +
Sbjct: 78  TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVL 132

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 79.7 bits (195), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 70/115 (60%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  +++ D+ G T LH+A++NGHL IVE L+  G D+NAS+
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
               TPLH A   GH E+ + L+  GA+++  ++   TP+  A   G ++I++ +
Sbjct: 78  LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVL 132

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 71/115 (61%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  +++ D+ G T LH+A+ +GHL IVE L+  G D++AS+
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
               TPLH A   GH E+ + L+ +GA+++ ++S   TP+  A   G ++I++ +
Sbjct: 78  VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVL 132

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 70/115 (60%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  +++ D+ G T LH+A+  GHL IVE L+  G D+NA +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
              +TPLH A L GH E+ + L+  GA+++ +++   TP+  A   G ++I++ +
Sbjct: 78  IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 54/84 (64%)
Query: 29  AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
           AAR   +E V  L  AG  +++KD  GRT LH+A+ NGHL +V+ L+  G D+NA ++  
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 89  NTPLHYACLNGHTEVAKKLVLSGA 112
            TPLH A  NGH EV K L+ +GA
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 70/115 (60%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  +++ D+ G T LH+A+  GHL IVE L+  G D+NA +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
              +TPLH A L GH E+ + L+  GA+++ +++   TP+  A   G ++I++ +
Sbjct: 78  IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 8   SINRTQTTETSSPENIDA-----LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMA 62
           ++ +  T ++ +  +I+      L  AA Y+ +  V  L   G  + +KD  G   LH A
Sbjct: 23  TVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA 82
Query: 63  SANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQ 122
            + GH  + E L+  G  +N ++  K TPLH A   G  E+ K L+  GA+ +  N    
Sbjct: 83  CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 142
Query: 123 TPIDEALSRGKMDIIDAI 140
           TP+D  +  G  DI D +
Sbjct: 143 TPLD-LVKDGDTDIQDLL 159

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 8   SINRTQTTETSSPENIDA-----LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMA 62
           ++ +  T ++ +  +I+      L  AA Y+ +  V  L   G  + +KD  G   LH A
Sbjct: 25  TVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA 84
Query: 63  SANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQ 122
            + GH  + E L+  G  +N ++  K TPLH A   G  E+ K L+  GA+ +  N    
Sbjct: 85  CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 144
Query: 123 TPIDEALSRGKMDIIDAI 140
           TP+D  +  G  DI D +
Sbjct: 145 TPLD-LVKDGDTDIQDLL 161

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 75.9 bits (185), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 69/115 (60%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  ++++D+ G T LH+A+ NGHL IVE L+  G D+NA +
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
               TPL  A L GH E+ + L+ +GA+++  +    TP+  A   G ++I++ +
Sbjct: 78  HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 6/146 (4%)
Query: 8   SINRTQTTETSSPENIDA-----LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMA 62
           ++ +  T ++ +  +I+      L  AA Y+ +  V  L   G  + +KD  G   LH A
Sbjct: 27  TVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA 86
Query: 63  SANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQ 122
            + GH  + E L+  G  +N ++  K TPLH A   G  E+ K L+  GA+ +  N    
Sbjct: 87  CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 146
Query: 123 TPIDEALSRGKMDIIDAINTAVAQLE 148
           TP+D  +  G  DI D +    A L+
Sbjct: 147 TPLD-LVKDGDTDIQDLLRGDAALLD 171

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 75.9 bits (185), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 28  AAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEE 87
           AAA  DD  +V  L + G  +++ D  G T LH+A+ANG L IVE L+  G D+NAS+  
Sbjct: 14  AAAGQDD--EVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSA 71
Query: 88  KNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
             TPLH A  +GH E+ + L+  GA+++  +    TP+  A   G+++I++ +
Sbjct: 72  GITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 19  SPENIDALLAAARYDDIEDV-ISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGR 77
           SPE +D +    R  +   V + L +    L+  D  G + LH A   G   +VE LI R
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 78  GVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGK 133
           G  IN  N   +TPLH A  +GH ++ +KL+   A+I+ +N H   P+  A   G+
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 117

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 80  DINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDA 139
           D+N  ++   +PLH+AC  G + V + L++ GA I+V+N  + TP+  A S G  DI+  
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 140 I 140
           +
Sbjct: 91  L 91

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 46/86 (53%)
Query: 48  LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
           L+  D  G + LH A   G   +VE LI RG  IN  N   +TPLH A  +GH ++ +KL
Sbjct: 27  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 86
Query: 108 VLSGANISVLNSHEQTPIDEALSRGK 133
           +   A+I+ +N H   P+  A   G+
Sbjct: 87  LQYKADINAVNEHGNVPLHYACFWGQ 112

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 67/115 (58%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G   ++ D  GRT LHMA+A GHL IVE L+  G D+NA +
Sbjct: 6   LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
               TPLH A   GH E+ + L+  GA+++  ++   TP+  A   G ++I++ +
Sbjct: 66  TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVL 120

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 69/115 (60%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  +++ D+ G T LH+A+ +GHL IVE L+  G D++A++
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
               TPLH A + GH E+ + L+  GA+++  +    TP+  A   G ++I++ +
Sbjct: 78  VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 66/115 (57%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  +++ D  G T LH+   NGHL I+E L+    D+NAS+
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
           +   TPLH A   GH E+ + L+  GA+++ ++    TP+  A   G ++I++ +
Sbjct: 78  KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 66/111 (59%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  +++KD  G T L++A+A+GHL IVE L+  G D+NA +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
               TPLH A   GH E+A+ L+  GA+++  +   +T  D ++  G  D+
Sbjct: 78  AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 66/115 (57%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  +++ D  G T LH+A+  GHL IVE L+  G D+NA +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
               TPLH A  NGH E+ + L+  GA+++  +    TP+  A   G ++I++ +
Sbjct: 78  NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 70/115 (60%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  +++ D  G T LH+A+  GHL IVE L+  G D+NA +
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
              +TPLH A   GH E+ + L+ +GA+++  + +  TP+  A +RG ++I++ +
Sbjct: 78  TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 65/111 (58%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  +++ D +G T LH+A+   HL IVE L+  G D+NA +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
            + +TPLH A L GH E+ + L+  GA+++  +   +T  D ++  G  D+
Sbjct: 78  NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 69/115 (60%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  ++++D+ G T LH+A+  GHL IVE L+  G D+NA +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
              +TPLH A   GH E+ + L+  GA+++  ++   TP+  A   G ++I++ +
Sbjct: 78  FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 62/111 (55%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL A R    ++V  L + G  +++ D  G T LH+A+  GHL IVE L+  G D+NAS+
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
               TPLH A   GH E+ + L+  GA+++  +   +T  D ++  G  D+
Sbjct: 78  SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 68/115 (59%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  +++ D  G T LH+A+  GHL IVE L+  G D+NA +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
               TPLH A   GH EV + L+ +GA+++  + +  TP+  A + G ++I++ +
Sbjct: 78  SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVL 132

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G P  + D  G + LH+A+  GH    E L+  GV  +A  
Sbjct: 6   LLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
           +   TPLH A   GH  + + L+  GA+++  +  + T +  A      ++++ +
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 63/111 (56%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  +++ D  G T LH+A+  GHL IVE L+  G D+NA +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
               TPLH A + GH E+ + L+  GA+++  +   +T  D ++  G  D+
Sbjct: 78  NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 62/111 (55%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL A R    ++V  L + G  +++ D  G T LH+A+  GHL IVE L+  G D+NAS+
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
               TPLH A   GH E+ + L+  GA+++  +   +T  D ++  G  D+
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Query: 16  ETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLI 75
           +T S +    L+ AA  + +E V  L  AG  +D KD++G T LH+A+  GH  +V+YL+
Sbjct: 38  DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97
Query: 76  GRG-VDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKM 134
             G +D+N  ++   TP+ +A    H ++ K L+  G++I++ ++ E   +  A   G +
Sbjct: 98  SNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV 157
Query: 135 DIIDAINTAVAQL 147
           DI + +  A   L
Sbjct: 158 DIAEILLAAKCDL 170

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 63/111 (56%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  ++++D  G T LH+A+ N HL IVE L+  G D+NA +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
               TPLH   + GH E+ + L+  GA+++  +   +T  D ++  G  D+
Sbjct: 78  AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 61/111 (54%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  +++ D  G T LH+A+  GHL IVE L+  G D+NA+ 
Sbjct: 18  LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
               TPLH A    H E+ + L+  GA+++  +   +T  D ++  G  D+
Sbjct: 78  NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 54/88 (61%)
Query: 29  AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
           AA+    E+V  L S G  ++++   G T LH+A+ NGH  IV+ L+ +G D+NA +++ 
Sbjct: 16  AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75
Query: 89  NTPLHYACLNGHTEVAKKLVLSGANISV 116
           NTP H A  NGH E+ K L   GA+++ 
Sbjct: 76  NTPEHLAKKNGHHEIVKLLDAKGADVNA 103

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 69.3 bits (168), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 61/113 (53%)
Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL  A      E V  L   GVP++ KD  G + LH+A++ G   IV+ L+G+G  +NA 
Sbjct: 43  ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 102
Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           N+   TPLHYA      E+A  L+  GAN    + +E T +  A ++G + +I
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 155

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 69.3 bits (168), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 61/113 (53%)
Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL  A      E V  L   GVP++ KD  G + LH+A++ G   IV+ L+G+G  +NA 
Sbjct: 44  ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 103
Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           N+   TPLHYA      E+A  L+  GAN    + +E T +  A ++G + +I
Sbjct: 104 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 156

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 61/111 (54%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL A R    ++V  L + G  +++ D  G T LH+A+  GHL IVE L+  G D+NA +
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
               TPLH A   GH E+ + L+  GA+++  +   +T  D ++  G  D+
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 5   ADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASA-GVPLDSKDSQGRTALHMAS 63
           ADPS     T E       D LL AAR  + E +++L +   V   + D +  T LH+A+
Sbjct: 11  ADPSAKAVLTGEYKK----DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA 66
Query: 64  ANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQT 123
               + IV+ L+  G D++A ++    PLH AC  GH EV + L+  GA ++ ++  + T
Sbjct: 67  GYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFT 126
Query: 124 PIDEALSRGKMDIIDAI 140
           P+ EA S+ ++++   +
Sbjct: 127 PLHEAASKNRVEVCSLL 143

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 49  DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
           + KD  G T L  A + GH  +V  L+  G  INASN + NT LH A +  H  V + L+
Sbjct: 146 NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLL 205
Query: 109 LSGANISVLNSHEQTPIDEALSRGK-MDIIDAINTAVAQLE 148
           L GA++ VLN  ++T +D A    K M+++  + + VA L+
Sbjct: 206 LHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD 246

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 66/175 (37%), Gaps = 63/175 (36%)
Query: 22  NIDALLA---AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRG 78
           N+D L A   A   D+++ V  L   G  ++  D++G   LH A++ G+L I EYLI +G
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129
Query: 79  ----------------------------------VDINASNEEKN--------------- 89
                                             VDI A+ +E+                
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189
Query: 90  -----------TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGK 133
                      T LH A   G+TEV K L+ +  ++++ +    TP+  A   GK
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 29  AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
           AA  +  E  + L   G   D+KD    TA+H A+A G+L +V  L+      N  + E 
Sbjct: 113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG 172
Query: 89  NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           NTPLH AC     E AK LV  GA+I + N  E+TP+   +++G + +I
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ--VAKGGLGLI 219

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 29  AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
           AA  +  E  + L   G   D+KD    TA+H A+A G+L +V  L+      N  + E 
Sbjct: 113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG 172
Query: 89  NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           NTPLH AC     E AK LV  GA+I + N  E+TP+   +++G + +I
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ--VAKGGLGLI 219

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1   MEQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALH 60
           +E +A+P++    TT   +P +I     AAR   +E V++L            +G T LH
Sbjct: 100 LENNANPNL---ATTAGHTPLHI-----AAREGHVETVLALLEKEASQACMTKKGFTPLH 151
Query: 61  MASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSH 120
           +A+  G + + E L+ R    NA+ +   TPLH A  + + ++ K L+  G +      +
Sbjct: 152 VAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN 211
Query: 121 EQTPIDEALSRGKMDIIDAINTAVAQLELGG 151
             TP+  A  + ++++  ++      L+ GG
Sbjct: 212 GYTPLHIAAKQNQVEVARSL------LQYGG 236

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 47  PLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKK 106
            L+ KD +G TAL  A  N  LGI E L+ +G ++N  +    TPL ++ + G++E++  
Sbjct: 60  KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF 119
Query: 107 LVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELG 150
           L+  GAN++  N   +TP+  A   G+ +I+  +      LELG
Sbjct: 120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL------LELG 157

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 54  QGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGAN 113
           +G T LH+AS  G +  VEYL+  G D N  +    TPLH AC +GH +V + L+   A 
Sbjct: 9   RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 114 ISVLNSHEQTPIDEALSRGKMDII 137
           ++       +P+ +A   G +DI+
Sbjct: 69  VNTTGYQNDSPLHDAAKNGHVDIV 92

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 19  SPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQ-GRTALHMASANGHLGIVEYLIGR 77
           SP  + AL      DDIE V+ L   G  +++K SQ G+TAL +A ++G + +V+ L+  
Sbjct: 147 SPIMLTALATLKTQDDIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLAC 205
Query: 78  GVDINASNEEKNTPLHYACLNGHTEVAKKLV-LSGANISVLNSHEQTPIDEALSRGKMDI 136
             D+N  +++ +T L  AC +GH E+A  L+ +   +IS+ +    T +  AL  G+ +I
Sbjct: 206 EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEI 265

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 58/122 (47%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           L+ A+ + +IE V  L   G        +  +AL +AS  G+  IV  L+ R VDIN  +
Sbjct: 40  LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA 145
               TPL YA    H +  + L+  GA+++       TP+D A++ G   +   I   + 
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Query: 146 QL 147
           +L
Sbjct: 160 KL 161

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 48/82 (58%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  +++KD  G T LH+A+  GHL IVE L+  G D+NA +
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 86  EEKNTPLHYACLNGHTEVAKKL 107
           +   T    +  NG+ ++A+ L
Sbjct: 66  KFGKTAFDISIDNGNEDLAEIL 87

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 55  GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
           G+  L  A A G    V  L+  G D+NA +++  TPLH A   GH E+ + L+ +GA++
Sbjct: 3   GKKLLEAARA-GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 115 SVLNSHEQTPIDEALSRGKMDIIDAINTA 143
           +  +   +T  D ++  G  D+ + +  A
Sbjct: 62  NAQDKFGKTAFDISIDNGNEDLAEILQKA 90

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 58/122 (47%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           L+ A+ + +IE V  L   G        +  +AL +AS  G+  IV  L+ R VDIN  +
Sbjct: 40  LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA 145
               TPL YA    H +  + L+  GA+++       TP+D A++ G   +   I   + 
Sbjct: 100 WNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Query: 146 QL 147
           +L
Sbjct: 160 KL 161

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
            + A +  D+++V    + G  ++     GR  LH A+  G L I+E+L+ +G DINA +
Sbjct: 6   FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
           +   TPL  A   GH    K L+  GA+ +V
Sbjct: 66  KHHITPLLSAVYEGHVSCVKLLLSKGADKTV 96

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
            + A +  D+++V    + G  ++     GR  LH A+  G L I+E+L+ +G DINA +
Sbjct: 11  FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
           +   TPL  A   GH    K L+  GA+ +V
Sbjct: 71  KHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 52  DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
           + +G TALH A   GH  IV++L+  GV++NA++ +  TPLH A    + +V K LV SG
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 112 ANISVLN-SHEQTPIDEA 128
           A +  +  S  QT  D+ 
Sbjct: 127 AAVFAMTYSDMQTAADKC 144

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 52  DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
           + +G TALH A   GH  IV++L+  GV++NA++ +  TPLH A    + +V K LV SG
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 112 ANISVLN-SHEQTPIDEA 128
           A +  +  S  QT  D+ 
Sbjct: 127 AAVFAMTYSDMQTAADKC 144

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  + +KD  G T LH+A+ NGHL +V+ L+  G D+NA +
Sbjct: 10  LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 86  EEKNTPLHYACLNGHTEVAKKL 107
           +   T    +  NG+ ++A+ L
Sbjct: 70  KFGKTAFDISIDNGNEDLAEIL 91

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 71  VEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALS 130
           V  L+  G D+ A ++  +TPLH A  NGH EV K L+ +GA+++  +   +T  D ++ 
Sbjct: 22  VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISID 81
Query: 131 RGKMDI 136
            G  D+
Sbjct: 82  NGNEDL 87

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 16  ETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKD-SQGRTALHMASANGHLGIVEYL 74
           E  + + + AL  A   +  E V  L   G  +D+ D   GR+ L  A  N  L +V+ L
Sbjct: 110 EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169
Query: 75  IGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKM 134
           +  G ++NA     ++ LH A   G   + + LV SGA+ S+ N H  TP+  A SR  +
Sbjct: 170 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI 229
Query: 135 DII 137
           DI+
Sbjct: 230 DIL 232

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 49  DSKDSQGRTALHMASANGHLGIVEYLIG-RGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
           DS+  +GRTALH A+   +  IV+YL+G +G + +  +E+  TP+  A   G  EV   L
Sbjct: 273 DSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL 332
Query: 108 VLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLE 148
           +  GA++  +++ + T    A +    +I+D  +    + E
Sbjct: 333 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           L  A R   +  V+ L   G      D +G + +H+A+  GH  IV YLI +G D++  +
Sbjct: 80  LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD 139
Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGANISVL---NSHEQTPIDEALSRGKMDII 137
           +   TPL +A    H+    +L+L+  N+SV      H+ T +  A+  G   +I
Sbjct: 140 QNGMTPLMWAAYRTHSVDPTRLLLT-FNVSVNLGDKYHKNTALHWAVLAGNTTVI 193

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 39  ISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN 98
           + L   G   + +D+ G + +H A+  G L  ++ L+  G D+N  +     P+H A   
Sbjct: 58  LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 117
Query: 99  GHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN 141
           GHT V   L  + +++   ++   TP++ AL RG  D++D + 
Sbjct: 118 GHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQ 159

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 39  ISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN 98
           + L   G   + +D+ G + +H A+  G L  ++ L+  G D+N  +     P+H A   
Sbjct: 52  LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 111
Query: 99  GHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN 141
           GHT V   L  + +++   ++   TP++ AL RG  D++D + 
Sbjct: 112 GHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 47/82 (57%)
Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           LL AAR    ++V  L + G  + +KD  G T LH+A+ NGHL +V+ L+  G D+ A +
Sbjct: 28  LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 86  EEKNTPLHYACLNGHTEVAKKL 107
           +   T    +  NG+ ++A+ L
Sbjct: 88  KFGKTAFDISIDNGNEDLAEIL 109

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 71  VEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALS 130
           V  L+  G D+ A ++  +TPLH A  NGH EV K L+ +GA++   +   +T  D ++ 
Sbjct: 40  VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99
Query: 131 RGKMDI 136
            G  D+
Sbjct: 100 NGNEDL 105

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 57  TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
           + LH A   GHL  V+ L+  G  +N    + +TPL  AC++G  +    L+  GA++  
Sbjct: 94  SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 153
Query: 117 LNSHEQTPIDEALSRGKMDIIDAI 140
             S   +PI EA  RG ++ ++++
Sbjct: 154 -ESDLASPIHEAARRGHVECVNSL 176

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 57  TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
           + +H A+ +GH   +  LI +G  +N    +  +PLH ACL GH    K L+  GA ++ 
Sbjct: 5   SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 117 LNSHEQTPIDEALSRGKMDIIDAI 140
           + +   TP+  A   G  D ++ +
Sbjct: 65  VTADWHTPLFNACVSGSWDCVNLL 88

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 49  DSKDSQGRTALHMASANGHLGIVEYLIGRGV--DINASNEEKNTPLHYACLNGHTEVAKK 106
           D  D  G T  H+A + G+L +V+ L  R +  D+N    +  T LH A      EV++ 
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 107 LVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI----NTAVAQLELGGFT 153
           L+ +GA++ + +   Q P+  A S G + +I+ +     +AV   +  G+T
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 49  DSKDSQGRTALHMASANGHLGIVEYLIGRGV--DINASNEEKNTPLHYACLNGHTEVAKK 106
           D  D  G T  H+A + G+L +V+ L  R +  D+N    +  T LH A      EV++ 
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 107 LVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
           L+ +GA++ + +   Q P+  A S G + +I+ +
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 49  DSKDSQGRTALHMASANGHLGIVEYLIGRGV--DINASNEEKNTPLHYACLNGHTEVAKK 106
           D  D  G T  H+A + G+L +V+ L  R +  D+N    +  T LH A      EV++ 
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 107 LVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI----NTAVAQLELGGFT 153
           L+ +GA++ + +   Q P+  A S G + +I+ +     +AV   +  G+T
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 35  IEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY 94
           +ED+I+   A   +++ D+ G+TALH A+A  +   V  L+    + +A +++  TPL  
Sbjct: 134 VEDLIT---ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFL 190
Query: 95  ACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           A   G  E +K L+ + AN  + +  ++ P D A  R   DI+
Sbjct: 191 AAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIV 233

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 25/140 (17%)
Query: 17  TSSPENIDALLAAARYDDIEDVI------------SLASAGV-------P-----LDSKD 52
           T+ PE  +ALL A    ++ D               LAS GV       P     L + +
Sbjct: 52  TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 111
Query: 53  SQGRTALHMASANGHLGIVEYLIGRGVDINASNE-EKNTPLHYACLNGHTEVAKKLVLSG 111
             G T LH+AS +G+LGIVE L+  G D+NA       T LH A    + ++   L+  G
Sbjct: 112 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 171
Query: 112 ANISVLNSHEQTPIDEALSR 131
           A+++ +     +P      R
Sbjct: 172 ADVNRVTYQGYSPYQLTWGR 191

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 57/127 (44%)
Query: 21  ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
           E    L+ AA +  I  V  L   G           +AL +A + G+  IV+ L+  GVD
Sbjct: 51  EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 110
Query: 81  INASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
           +N  +    TPL YA    H +  K L+ SGA+ ++        +D A++ G   +   I
Sbjct: 111 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 170
Query: 141 NTAVAQL 147
            + + +L
Sbjct: 171 ESHLLKL 177

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 17  TSSPENIDALLAAARYDDIEDVI------------SLASAGV-------P-----LDSKD 52
           T+ PE  +ALL A    ++ D               LAS GV       P     L + +
Sbjct: 55  TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 114
Query: 53  SQGRTALHMASANGHLGIVEYLIGRGVDINASNE-EKNTPLHYACLNGHTEVAKKLVLSG 111
             G T LH+AS +G+LGIVE L+  G D+NA       T LH A    + ++   L+  G
Sbjct: 115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 174
Query: 112 ANISVLNSHEQTPIDEALSRGKMDI 136
           A+++ +     +P      R    I
Sbjct: 175 ADVNRVTYQGYSPYQLTWGRPSTRI 199

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 57/127 (44%)
Query: 21  ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
           E    L+ AA +  I  V  L   G           +AL +A + G+  IV+ L+  GVD
Sbjct: 35  EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 94
Query: 81  INASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
           +N  +    TPL YA    H +  K L+ SGA+ ++        +D A++ G   +   I
Sbjct: 95  VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154
Query: 141 NTAVAQL 147
            + + +L
Sbjct: 155 ESHLLKL 161

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 23  IDALLAAARYDDIEDVIS-LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDI 81
           + ALL AA   D + V   L      +D  D++G T L++A  N  + I + LI RG DI
Sbjct: 6   VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65
Query: 82  NASNEEKNTPLHYACLNGHTEV 103
           N  N   ++P  YA   G TE+
Sbjct: 66  NLQNSISDSPYLYAGAQGRTEI 87

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 57/127 (44%)
Query: 21  ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
           E    L+ AA +  I  V  L   G           +AL +A + G+  IV+ L+  GVD
Sbjct: 33  EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 92
Query: 81  INASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
           +N  +    TPL YA    H +  K L+ SGA+ ++        +D A++ G   +   I
Sbjct: 93  VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 152
Query: 141 NTAVAQL 147
            + + +L
Sbjct: 153 ESHLLKL 159

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 46  VPLDSKDSQGRTALHMASANGHLGIVEYLIGR-GVDINASNEEKNTPLHYACLNGHTEVA 104
           V ++  D  G TAL+ A   GH  IVE L  +  +++N  N+  +T LH A   G+ ++ 
Sbjct: 97  VGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIV 156
Query: 105 KKLVLSGANISVLNSHEQTPIDEA 128
           + L+  GA   + N  ++   D A
Sbjct: 157 QLLLAKGARTDLRNIEKKLAFDXA 180

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 22  NIDALLAAARYDDIEDVISLASAGV------PLDSKDSQGRTALHMASAN---GHLGIVE 72
            + +L  A +  DI  ++   + GV      PL +      TALH+A  +     L IV+
Sbjct: 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVD 189
Query: 73  YLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
           +L+    +++    + +T LHY CL  + E  K L+   A+I + N   +TP+D A
Sbjct: 190 FLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 245

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 57  TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
           T L  A+A   L   E+L+  G ++N ++     PLH+A + GHT +A   +  GA++  
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 117 LNSHEQTPIDEALSRGKMDIIDAINTA 143
            +S  + P+  A+     DI+  +  A
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLLRLA 323

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 57  TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
           T L  A+A   L   E+L+  G ++N ++     PLH+A + GHT +A   +  GA++  
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 117 LNSHEQTPIDEALSRGKMDIIDAINTA 143
            +S  + P+  A+     DI+  +  A
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLLRLA 323

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 57  TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
           T L  A+A   L   E+L+  G ++N ++     PLH+A + GHT +A   +  GA++  
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 117 LNSHEQTPIDEALSRGKMDIIDAINTA 143
            +S  + P+  A+     DI+  +  A
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLLRLA 323

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 39  ISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN 98
           + L   G   + +D+ G + +H A+  G L  ++ L+  G D+NA +   + P+H A   
Sbjct: 58  LELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIRE 117
Query: 99  GHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN 141
           GH+ V   L    +++   ++   TP++ A  RG  +++D + 
Sbjct: 118 GHSSVVSFLA-PESDLHHRDASGLTPLELARQRGAQNLMDILQ 159

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 39  ISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN 98
           + L   G   + +D+ G + +H A+  G L  ++ L+  G D+NA +   + P+H A   
Sbjct: 60  LELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIRE 119
Query: 99  GHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN 141
           GH+ V   L    +++   ++   TP++ A  RG  +++D + 
Sbjct: 120 GHSSVVSFLA-PESDLHHRDASGLTPLELARQRGAQNLMDILQ 161

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 49  DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
           D KD  G   +H A+  G L  ++ L+    D+N  + E N PLH A   GH  V + LV
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 109 L-SGANISVLNSHEQTPIDEALSRGKMDII 137
             + +N+   N    T  D A   G+ +++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVV 153

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 49  DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
           D KD  G   +H A+  G L  ++ L+    D+N  + E N PLH A   GH  V + LV
Sbjct: 64  DLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 109 L-SGANISVLNSHEQTPIDEALSRGKMDII 137
             + +N+   N    T  D A   G+ +++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVV 153

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 49  DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
           D KD  G   +H A+  G L  ++ L+    D+N  + E N PLH A   GH  V + LV
Sbjct: 64  DLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 109 L-SGANISVLNSHEQTPIDEALSRGKMDII 137
             + +N+   N    T  D A   G+ +++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVV 153

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 49  DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
           D KD  G   +H A+  G L  ++ L+    D+N  + E N PLH A   GH  V + LV
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 109 L-SGANISVLNSHEQTPIDEALSRGKMDII 137
             + +N+   N    T  D A   G+ +++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVV 153

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 49  DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
           D KD  G   +H A+  G L  ++ L+    D+N  + E N PLH A   GH  V + LV
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 109 L-SGANISVLNSHEQTPIDEALSRGKMDII 137
             + +N+   N    T  D A   G+ +++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVV 153

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 18/108 (16%)
Query: 25  ALLAAARYDDIEDVISLASAGV-----PLDSKDSQGRTALHMASANGHLGIVEYLIGRGV 79
           AL  AA YD++E  + L  A       P+ S+  +G+TALH+A  N ++ +V  L+ RG 
Sbjct: 40  ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA 99
Query: 80  DINASN-------------EEKNTPLHYACLNGHTEVAKKLVLSGANI 114
            ++A                    PL +A   G  E+ + L+  GA+I
Sbjct: 100 SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI 147

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 52  DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
           + +G TALH A    +  IV++LI  G ++N+ +    TPLH A     T +   LV  G
Sbjct: 51  NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 112 ANI 114
           A I
Sbjct: 111 AAI 113

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 39.3 bits (90), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 52  DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
           D +    +H+A+  G    V  LI  GV     N    T LH AC  G  + AK L   G
Sbjct: 17  DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Query: 112 ANISVLNSHEQTPIDEALSRGKMDIIDAI 140
              S+   H Q PI  A+   K D++ A+
Sbjct: 77  EVHSLW--HGQKPIHLAVXANKTDLVVAL 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-34
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-34
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-29
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-34
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-33
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-28
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-27
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-34
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-33
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-28
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-27
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-33
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-29
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-33
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-31
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-31
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-31
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-31
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-30
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-30
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-30
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-25
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-33
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-32
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-31
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-33
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-31
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-23
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-33
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-32
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-26
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-26
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-33
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-28
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-23
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-17
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-27
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-21
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-32
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-30
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-21
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-31
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-25
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-24
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-31
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-30
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-30
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-28
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-31
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-27
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-31
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-30
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-29
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-29
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-26
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-25
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-31
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-26
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-27
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-24
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-31
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-27
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-26
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-26
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-23
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-31
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-12
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-31
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-31
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-24
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-31
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-29
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-28
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-25
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-25
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-27
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-30
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-28
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-30
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-23
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-30
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-29
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-25
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-27
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-25
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-23
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-30
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-29
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-28
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-30
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-27
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-24
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-30
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-21
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-29
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-28
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-29
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-26
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-20
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-28
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-28
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-27
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-22
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-28
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-27
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-24
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-24
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-28
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-25
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-27
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-26
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-26
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-26
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-26
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-23
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-26
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-23
2rfa_A	232	Transient receptor potential cation channel subfa	2e-24
2rfa_A	232	Transient receptor potential cation channel subfa	2e-24
2rfa_A	232	Transient receptor potential cation channel subfa	4e-22
2rfa_A	232	Transient receptor potential cation channel subfa	2e-21
2rfa_A	232	Transient receptor potential cation channel subfa	2e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-24
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-23
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-22
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-21
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-17
2pnn_A	273	Transient receptor potential cation channel subfa	3e-20
2pnn_A	273	Transient receptor potential cation channel subfa	3e-16
2pnn_A	273	Transient receptor potential cation channel subfa	2e-14
2pnn_A	273	Transient receptor potential cation channel subfa	3e-14
2pnn_A	273	Transient receptor potential cation channel subfa	3e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-20
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-15
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-19
2etb_A	256	Transient receptor potential cation channel subfam	3e-19
2etb_A	256	Transient receptor potential cation channel subfam	7e-19
2etb_A	256	Transient receptor potential cation channel subfam	2e-18
2etb_A	256	Transient receptor potential cation channel subfam	2e-17
2etb_A	256	Transient receptor potential cation channel subfam	6e-12
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-19
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-17
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-15
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-05

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  115 bits (291), Expect = 2e-34
 Identities = 31/113 (27%), Positives = 54/113 (47%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
             + A +  D+++V    + G  ++     GR  LH A+  G L I+E+L+ +G DINA 
Sbjct: 10  EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           ++   TPL  A   GH    K L+  GA+ +V      T  +   ++    ++
Sbjct: 70  DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  100 bits (253), Expect = 1e-28
 Identities = 27/86 (31%), Positives = 41/86 (47%)

Query: 51  KDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLS 110
             S        A  NG L  V+  + +G D+N + E    PLHYA   G  E+ + L+L 
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 111 GANISVLNSHEQTPIDEALSRGKMDI 136
           GA+I+  + H  TP+  A+  G +  
Sbjct: 63  GADINAPDKHHITPLLSAVYEGHVSC 88

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 87.1 bits (217), Expect = 3e-23
 Identities = 17/81 (20%), Positives = 29/81 (35%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA    +E +  L   G  +++ D    T L  A   GH+  V+ L+ +G D    
Sbjct: 43  PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 102

Query: 85  NEEKNTPLHYACLNGHTEVAK 105
             +  T            + +
Sbjct: 103 GPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 50.9 bits (123), Expect = 3e-09
 Identities = 10/55 (18%), Positives = 22/55 (40%)

Query: 83  ASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
                 +    +A  NG  +  K  V  G +++      + P+  A   G+++I+
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEIL 56

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  115 bits (292), Expect = 2e-34
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  A+   DI  V  L   G   + KD  G T LH A  +GHL +VE L+     +N +
Sbjct: 13  LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII------D 138
             + ++PLH A  NGH ++ K L+  GA+ + +N     P+D         ++      +
Sbjct: 73  GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

Query: 139 AINTA 143
           + + +
Sbjct: 133 SSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  102 bits (256), Expect = 7e-29
 Identities = 30/87 (34%), Positives = 47/87 (54%)

Query: 51  KDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLS 110
            + +G T LH+AS  G +  VEYL+  G D N  +    TPLH AC +GH +V + L+  
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 111 GANISVLNSHEQTPIDEALSRGKMDII 137
            A ++       +P+ +A   G +DI+
Sbjct: 66  KALVNTTGYQNDSPLHDAAKNGHVDIV 92

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 58.2 bits (142), Expect = 7e-12
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 78  GVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           G+D   +N    T LH A + G     + L+ +G++ +V +    TP+ EA + G + ++
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  115 bits (292), Expect = 6e-34
 Identities = 24/113 (21%), Positives = 55/113 (48%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           ++   A   ++  + +       ++  D +G T L  A+A+G + +VE+L+  G D    
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            + + + L  AC  G+T++ K L+  G +++  + +  TP+  A+    +  +
Sbjct: 66  GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCV 118

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  112 bits (284), Expect = 9e-33
 Identities = 32/113 (28%), Positives = 51/113 (45%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L+ AA +  I  V  L   G           +AL +A + G+  IV+ L+  GVD+N  
Sbjct: 39  PLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEY 98

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           +    TPL YA    H +  K L+ SGA+ ++        +D A++ G   + 
Sbjct: 99  DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQ 151

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  101 bits (254), Expect = 3e-28
 Identities = 20/90 (22%), Positives = 32/90 (35%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL  A      + V  L   GV ++  D  G T L  A    H+  V+ L+  G D    
Sbjct: 72  ALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 131

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
            +     +  A   G+  V + +      +
Sbjct: 132 TDSGYNSMDLAVALGYRSVQQVIESHLLKL 161

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 99.0 bits (248), Expect = 3e-27
 Identities = 23/82 (28%), Positives = 42/82 (51%)

Query: 55  GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
              ++H  +A G +  +   I +   IN ++EE  TPL +A  +G   V + L+ +GA+ 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 115 SVLNSHEQTPIDEALSRGKMDI 136
            +L    ++ +  A S+G  DI
Sbjct: 63  QLLGKGRESALSLACSKGYTDI 84

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 63.9 bits (157), Expect = 7e-14
 Identities = 11/63 (17%), Positives = 27/63 (42%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            LL A   + ++ V  L  +G     +   G  ++ +A A G+  + + +    + +  +
Sbjct: 105 PLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQN 164

Query: 85  NEE 87
            +E
Sbjct: 165 IKE 167

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  115 bits (292), Expect = 9e-34
 Identities = 40/113 (35%), Positives = 61/113 (53%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  A R      V  L   G  ++  +    T LH+A+++GH  IV+ L+    DINA 
Sbjct: 42  PLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 101

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           NE  N PLHYAC  G  +VA+ LV +GA +S+ N + + P+D+A +  +  + 
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLR 154

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  114 bits (287), Expect = 5e-33
 Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 1/120 (0%)

Query: 19  SPENIDALLAAARYDDIEDVISLASAG-VPLDSKDSQGRTALHMASANGHLGIVEYLIGR 77
           SPE +D +    R  +   V          L+  D  G + LH A   G   +VE LI R
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 78  GVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           G  IN  N   +TPLH A  +GH ++ +KL+   A+I+ +N H   P+  A   G+  + 
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  101 bits (255), Expect = 3e-28
 Identities = 18/99 (18%), Positives = 37/99 (37%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA +   + V  L      +++ +  G   LH A   G   + E L+  G  ++  
Sbjct: 75  PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC 134

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQT 123
           N+    P+  A       + ++    G N++ +   +  
Sbjct: 135 NKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTF 173

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 71.7 bits (177), Expect = 1e-16
 Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 6/77 (7%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  A  +   +    L + G  +   +  G   +  A A     + E     G ++N  
Sbjct: 108 PLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR- 166

Query: 85  NEEKNTPLHYACLNGHT 101
                 P       G T
Sbjct: 167 -----IPYKDTFWKGTT 178

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  118 bits (299), Expect = 1e-33
 Identities = 35/113 (30%), Positives = 61/113 (53%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
             LAA    D E+V+ L   G  ++  +  G TALH A  + ++ +V++L+  G +IN  
Sbjct: 43  VFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP 102

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           + E   PLH A   G+ ++A+ L+  GA++  +NS   TP+D A      +++
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  112 bits (282), Expect = 4e-31
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 1/108 (0%)

Query: 22  NIDALLAAARYDDIEDVIS-LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
           +I+A         + D    L S  +        G TALH+A+A G+  +++ LI    D
Sbjct: 165 DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224

Query: 81  INASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
           +N  + +  TPLH A   G  E  + LV +  ++  +N   QT  D A
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  101 bits (254), Expect = 6e-27
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 1/113 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
                       D+            K   G   L  A ++G    V  L+ RG DIN +
Sbjct: 11  NEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA-ACSSGDTEEVLRLLERGADINYA 69

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           N +  T LH AC++ + ++ K LV +GANI+  ++    P+  A S G +DI 
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIA 122

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 95.3 bits (238), Expect = 1e-24
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL  A   D+++ V  L   G  ++  D++G   LH A++ G+L I EYLI +G  + A 
Sbjct: 76  ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV 135

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLS-GANISVLNSHEQTP 124
           N E +TPL  A      E+ +  V   G +I      E+  
Sbjct: 136 NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI 176

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 86.4 bits (215), Expect = 2e-21
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 6/113 (5%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  A      E + +       ++ +      A             ++L    ++    
Sbjct: 142 PLDIAEEEAMEELLQNE------VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH 195

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            +   T LH A   G+TEV K L+ +  ++++ +    TP+  A   GK +  
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC 248

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 86.0 bits (214), Expect = 3e-21
 Identities = 22/91 (24%), Positives = 32/91 (35%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL  AA     E +  L  A   ++ KD  G T LH A+  G       L+    D+ A 
Sbjct: 202 ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV 261

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANIS 115
           N+   T    A  +    + +         S
Sbjct: 262 NKVGQTAFDVADEDILGYLEELQKKQNLLHS 292

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 85.2 bits (212), Expect = 7e-21
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 1/90 (1%)

Query: 48  LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
           +   D++ +    +    G    +E  + +        ++       AC +G TE   +L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDD-GAVFLAACSSGDTEEVLRL 59

Query: 108 VLSGANISVLNSHEQTPIDEALSRGKMDII 137
           +  GA+I+  N    T + +A     +D++
Sbjct: 60  LERGADINYANVDGLTALHQACIDDNVDMV 89

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.3 bits (124), Expect = 1e-08
 Identities = 13/65 (20%), Positives = 27/65 (41%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L AAA +   E    L      +++ +  G+TA  +A  +    + E    + +  +  
Sbjct: 235 PLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEK 294

Query: 85  NEEKN 89
            E+K+
Sbjct: 295 REKKS 299

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  113 bits (286), Expect = 2e-33
 Identities = 45/113 (39%), Positives = 70/113 (61%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AAR   +E V  L  AG  +++KD  GRT LH+A+ NGHL +V+ L+  G D+NA 
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           ++   TPLH A  NGH EV K L+ +GA+++  + + +TP+  A   G ++++
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  101 bits (255), Expect = 7e-29
 Identities = 41/88 (46%), Positives = 55/88 (62%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AAR   +E V  L  AG  +++KD  GRT LH+A+ NGHL +V+ L+  G D+NA 
Sbjct: 38  PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 97

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGA 112
           ++   TPLH A  NGH EV K L+ +GA
Sbjct: 98  DKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 99.0 bits (248), Expect = 9e-28
 Identities = 34/83 (40%), Positives = 55/83 (66%)

Query: 55  GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
           GRT LH+A+ NGHL +V+ L+  G D+NA ++   TPLH A  NGH EV K L+ +GA++
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 115 SVLNSHEQTPIDEALSRGKMDII 137
           +  + + +TP+  A   G ++++
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVV 84

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  120 bits (303), Expect = 4e-33
 Identities = 34/114 (29%), Positives = 59/114 (51%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L   A+   +     L   GV +D+    G T LH+AS  G++ +V++L+    D+NA 
Sbjct: 281 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 340

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIID 138
            +   +PLH A   GHT++   L+ +GA+ + ++S   TP+  A   G + + D
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD 394

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  114 bits (289), Expect = 3e-31
 Identities = 32/113 (28%), Positives = 55/113 (48%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  A+    +  V +L   G   +  + +  T LHMA+  GH  + +YL+     +NA 
Sbjct: 17  PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            ++  TPLH A   GHT + K L+ + AN ++  +   TP+  A   G ++ +
Sbjct: 77  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV 129

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  114 bits (289), Expect = 3e-31
 Identities = 30/113 (26%), Positives = 50/113 (44%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA+Y  +     L       ++    G T LH+A  + +L IV+ L+ RG   ++ 
Sbjct: 149 PLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 208

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
                TPLH A      EVA+ L+  G + +  +    TP+  A   G  +++
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 261

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  114 bits (288), Expect = 5e-31
 Identities = 29/113 (25%), Positives = 53/113 (46%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AAR   +E V++L            +G T LH+A+  G + + E L+ R    NA+
Sbjct: 116 PLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA 175

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            +   TPLH A  + + ++ K L+  G +      +  TP+  A  + ++++ 
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA 228

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  113 bits (286), Expect = 8e-31
 Identities = 31/113 (27%), Positives = 49/113 (43%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AAR    E    L      +++K    +T LH A+  GH  +V+ L+    + N +
Sbjct: 50  PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 109

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
               +TPLH A   GH E    L+   A+ + +     TP+  A   GK+ + 
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVA 162

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  112 bits (284), Expect = 1e-30
 Identities = 32/113 (28%), Positives = 55/113 (48%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA+    E V  L S     +  +  G T LH+ +  GH+ + + LI  GV ++A+
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 307

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
                TPLH A   G+ ++ K L+   A+++       +P+ +A  +G  DI+
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIV 360

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  112 bits (284), Expect = 2e-30
 Identities = 31/114 (27%), Positives = 50/114 (43%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  A  +++++ V  L   G    S    G T LH+A+    + +   L+  G   NA 
Sbjct: 182 PLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIID 138
           + +  TPLH A   GH E+   L+   AN ++ N    TP+      G + + D
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVAD 295

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  112 bits (282), Expect = 3e-30
 Identities = 33/113 (29%), Positives = 52/113 (46%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA+ + +E   SL   G   +++  QG T LH+A+  GH  +V  L+ +  + N  
Sbjct: 215 PLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           N+   TPLH     GH  VA  L+  G  +        TP+  A   G + ++
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 327

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  110 bits (277), Expect = 2e-29
 Identities = 30/113 (26%), Positives = 48/113 (42%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AAR      V  L       +   + G T LH+A+  GH+  V  L+ +       
Sbjct: 83  PLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM 142

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            ++  TPLH A   G   VA+ L+   A+ +    +  TP+  A+    +DI+
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 195

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  105 bits (265), Expect = 9e-28
 Identities = 38/96 (39%), Positives = 52/96 (54%)

Query: 42  ASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHT 101
            S G+        G T LH+AS  GHL IV+ L+ RG   N SN +  TPLH A   GHT
Sbjct: 1   GSPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT 60

Query: 102 EVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           EVAK L+ + A ++     +QTP+  A   G  +++
Sbjct: 61  EVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMV 96

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 99.1 bits (248), Expect = 2e-25
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 6/114 (5%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  A+ Y +I+ V  L      +++K   G + LH A+  GH  IV  L+  G   N  
Sbjct: 314 PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLS---GANISVLNSHEQTP---IDEALSRG 132
           + +  TPL  A   G+  V   L +     + + V + H  +    +DE L   
Sbjct: 374 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVS 427

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 27/86 (31%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGI-------------- 70
            L  AA+    + V  L   G   +   S G T L +A   G++ +              
Sbjct: 347 PLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFV 406

Query: 71  -------------VEYLIGRGVDINA 83
                        V+ ++    D   
Sbjct: 407 LVSDKHRMSFPETVDEILDVSEDEGE 432

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  114 bits (287), Expect = 4e-33
 Identities = 34/113 (30%), Positives = 54/113 (47%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L+ A+ + +IE V  L   G        +  +AL +AS  G+  IV  L+ R VDIN  
Sbjct: 39  PLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY 98

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           +    TPL YA    H +  + L+  GA+++       TP+D A++ G   + 
Sbjct: 99  DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQ 151

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  112 bits (282), Expect = 2e-32
 Identities = 24/114 (21%), Positives = 53/114 (46%), Gaps = 1/114 (0%)

Query: 25  ALLAAARYDDIEDVISLASAG-VPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA 83
           ++   A   +++ +      G   ++  D +G T L  ASA G +  V +L+  G D + 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
             +E+ + L  A   G+T++   L+    +I++ + +  TP+  A+    +  +
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCV 118

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  109 bits (275), Expect = 2e-31
 Identities = 25/100 (25%), Positives = 39/100 (39%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL  A+     + V  L    V ++  D  G T L  A    H+  VE L+ RG D+   
Sbjct: 72  ALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE 131

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTP 124
            +   TP+  A   G+ +V + +      +   N     P
Sbjct: 132 ADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 95.2 bits (238), Expect = 1e-25
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 55  GRTALHMASANGHLGIVEYLIGRGVD-INASNEEKNTPLHYACLNGHTEVAKKLVLSGAN 113
              ++H  +A G L  ++  + +G + +N  +E   TPL +A   G  E  + L+  GA+
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 114 ISVLNSHEQTPIDEALSRGKMDII 137
             +L    ++ +  A + G  DI+
Sbjct: 62  PHILAKERESALSLASTGGYTDIV 85

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  112 bits (284), Expect = 7e-33
 Identities = 40/113 (35%), Positives = 59/113 (52%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA+Y        L  AGV  D++    RT LHMA++ GH  IVE L+  G D+NA 
Sbjct: 37  PLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK 96

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           +  K T LH+A  + H EV + L+  GA++   +   +T  D ++  G  D+ 
Sbjct: 97  DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  108 bits (272), Expect = 4e-31
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 1/113 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            LL AAR    ++V  L + G P    D  G + LH+A+  GH    E L+  GV  +A 
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            +   TPLH A   GH  + + L+  GA+++  +  + T +  A      +++
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV 116

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 90.1 bits (225), Expect = 4e-24
 Identities = 25/83 (30%), Positives = 40/83 (48%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA       V  L   G  +++KD    TALH A+ + H  +VE LI  G D++  
Sbjct: 70  PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129

Query: 85  NEEKNTPLHYACLNGHTEVAKKL 107
           ++   T    +  NG+ ++A+ L
Sbjct: 130 SKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 87.8 bits (219), Expect = 4e-23
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 55  GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
               L  A+  G    V  L+  G      +    +PLH A   GH    + L+ +G + 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 115 SVLNSHEQTPIDEALSRGKMDII 137
                 ++TP+  A S G  +I+
Sbjct: 61  DARTKVDRTPLHMAASEGHANIV 83

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  113 bits (285), Expect = 8e-33
 Identities = 42/113 (37%), Positives = 67/113 (59%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            LL AAR    ++V  L + G  ++++D+ G T LH+A+ NGHL IVE L+  G D+NA 
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           +    TPL  A L GH E+ + L+ +GA+++  +    TP+  A   G ++I+
Sbjct: 77  DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIV 129

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  111 bits (280), Expect = 5e-32
 Identities = 39/113 (34%), Positives = 63/113 (55%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA    +E V  L   G  +++ D  G T L +A+  GHL IVE L+  G D+NA+
Sbjct: 50  PLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN 109

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           + E +TPLH A + GH E+ + L+ +GA+++  +   +T  D ++  G  D+ 
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLA 162

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 96.3 bits (241), Expect = 3e-26
 Identities = 27/90 (30%), Positives = 44/90 (48%)

Query: 48  LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
                S     L  A+  G    V  L+  G D+NA +    TPLH A  NGH E+ + L
Sbjct: 7   HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVL 66

Query: 108 VLSGANISVLNSHEQTPIDEALSRGKMDII 137
           + +GA+++ ++    TP+  A   G ++I+
Sbjct: 67  LKNGADVNAVDHAGMTPLRLAALFGHLEIV 96

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 95.5 bits (239), Expect = 6e-26
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA +  +E V  L   G  +++ D +G T LH+A+  GHL IVE L+  G D+NA 
Sbjct: 83  PLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ 142

Query: 85  NEEKNTPLHYACLNGHTEVAKKLV 108
           ++   T    +  NG+ ++A+ L 
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEILQ 166

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  114 bits (288), Expect = 9e-33
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIG-RGVDINA 83
            L  AA+  ++  +       V ++  D  G TAL+ A   GH  IVE L     +++N 
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ 135

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            N+  +T LH A   G+ ++ + L+  GA   + N  ++   D A +     ++
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLL 189

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  102 bits (256), Expect = 5e-28
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 1/109 (0%)

Query: 25  ALLAAARYDDIEDVISLAS-AGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA 83
           AL  A      + V  L +   + L+ ++  G TALH A+  G+  IV+ L+ +G   + 
Sbjct: 109 ALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRG 132
            N EK      A       + KK   + A  ++ N+ +    +++    
Sbjct: 169 RNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 95.4 bits (238), Expect = 3e-25
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 6/114 (5%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
                        + S       +  +       LH A+  G+L  +   +   V +N  
Sbjct: 48  NWWKGTSKGRTGLIPSNY-----VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL 102

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVL-SGANISVLNSHEQTPIDEALSRGKMDII 137
           ++  +T L++AC  GH ++ + L       ++  N    T +  A  +G  DI+
Sbjct: 103 DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIV 156

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 88.8 bits (221), Expect = 7e-23
 Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 5/113 (4%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            +  A    +      L      +        T     ++ G  G++         +   
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP-----SNYVAEQ 69

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            E  + PLH A   G+    ++ + +   ++ L+    T +  A   G  DI+
Sbjct: 70  AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 80.4 bits (199), Expect = 1e-19
 Identities = 18/76 (23%), Positives = 29/76 (38%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL AAA     + V  L + G   D ++ + + A  MA+      +++   G       S
Sbjct: 143 ALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLS 202

Query: 85  NEEKNTPLHYACLNGH 100
           N E       + L  H
Sbjct: 203 NAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 75.0 bits (185), Expect = 1e-17
 Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 5/91 (5%)

Query: 47  PLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKK 106
           P       G+  +  A         + L     DI    +  +T        G T +   
Sbjct: 4   PPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP- 62

Query: 107 LVLSGANISVLNSHEQTPIDEALSRGKMDII 137
                  ++        P+ EA  RG +  +
Sbjct: 63  ----SNYVAEQAESIDNPLHEAAKRGNLSWL 89

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.8 bits (117), Expect = 8e-08
 Identities = 7/61 (11%), Positives = 18/61 (29%)

Query: 82  NASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN 141
               +     +  A          +L +   +I  +     T   +  S+G+  +I +  
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNY 65

Query: 142 T 142
            
Sbjct: 66  V 66

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  111 bits (281), Expect = 6e-32
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 1/114 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L AA + D  +    L      +D  D++G T L++A  N  + I + LI RG DIN  
Sbjct: 9   LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGA-NISVLNSHEQTPIDEALSRGKMDII 137
           N   ++P  YA   G TE+   ++     +++  N +    +  A  +G +D +
Sbjct: 69  NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 99.4 bits (249), Expect = 5e-27
 Identities = 25/87 (28%), Positives = 43/87 (49%)

Query: 51  KDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLS 110
           K  +    L  A+      + E L      ++  + E NTPL+ A  N   E+AK L+  
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 111 GANISVLNSHEQTPIDEALSRGKMDII 137
           GA+I++ NS   +P   A ++G+ +I+
Sbjct: 62  GADINLQNSISDSPYLYAGAQGRTEIL 88

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 96.7 bits (242), Expect = 5e-26
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 7/120 (5%)

Query: 25  ALLAAARYDDIEDVISLASAGVP-LDSKDSQGRTALHMASANGHLGIVEYLIGRG-VDIN 82
             L A      E +  +     P L+  +  G  AL  A+  GH+  V+ L+  G  DI+
Sbjct: 75  PYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID 134

Query: 83  ASNEEKNTPLHYACL-----NGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
             N+   T L  A         + ++ K L+ +GA+ S+ ++  +T +D A  +G  +I 
Sbjct: 135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEIS 194

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 85.2 bits (212), Expect = 1e-21
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 25  ALLAAARYDDIEDVISLASAG-VPLDSKDSQGRTALHMA-----SANGHLGIVEYLIGRG 78
           AL+ AA    I++V  L   G   +D ++  G TAL  A         +  IV+ L+  G
Sbjct: 109 ALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168

Query: 79  VDINASNEEKNTPLHYACLNGHTEVAKKLV 108
            D +  +    T + YA   G+TE++K L 
Sbjct: 169 ADQSIKDNSGRTAMDYANQKGYTEISKILA 198

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  110 bits (277), Expect = 8e-32
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 2/114 (1%)

Query: 25  ALLAAARYDDIEDVISL-ASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA 83
            L  AA   D+++V  L     V  D+ +  G+TAL +    G   I   L+ +G   N 
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNV 63

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            +    +P+H A   G  +  K LV  GA+++V +     PI  A+  G   ++
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  105 bits (265), Expect = 5e-30
 Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 2/114 (1%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL     +      + L   G   + +D+ G + +H A+  G L  ++ L+  G D+N  
Sbjct: 39  ALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP 97

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIID 138
           +     P+H A   GHT V   L  + +++   ++   TP++ AL RG  D++D
Sbjct: 98  DGTGALPIHLAVQEGHTAVVSFL-AAESDLHRRDARGLTPLELALQRGAQDLVD 150

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 89.8 bits (224), Expect = 8e-24
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            +  AAR   ++ +  L   G  ++  D  G   +H+A   GH  +V +L     D++  
Sbjct: 71  PVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRR 129

Query: 85  NEEKNTPLHYACLNGHTEVAKKLV 108
           +    TPL  A   G  ++   L 
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 83.2 bits (207), Expect = 3e-21
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 55  GRTALHMASANGHLGIVEYLIGR-GVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGAN 113
               L  A+A G +  V  L+ R  V  +A N    T L      G T +A +L+  GA+
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60

Query: 114 ISVLNSHEQTPIDEALSRGKMDI 136
            +V ++   +P+ +A   G +D 
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDT 83

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  109 bits (275), Expect = 1e-31
 Identities = 42/113 (37%), Positives = 66/113 (58%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            LL AAR    ++V  L + G  +++KD  G T L++A+A+GHL IVE L+  G D+NA 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           +    TPLH A   GH E+A+ L+  GA+++  +   +T  D ++  G  D+ 
Sbjct: 77  DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLA 129

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 92.8 bits (232), Expect = 3e-25
 Identities = 26/90 (28%), Positives = 45/90 (50%)

Query: 48  LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
                S     L  A+  G    V  L+  G D+NA +E   TPL+ A  +GH E+ + L
Sbjct: 7   HHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVL 66

Query: 108 VLSGANISVLNSHEQTPIDEALSRGKMDII 137
           + +GA+++ +++   TP+  A   G ++I 
Sbjct: 67  LKNGADVNAVDAIGFTPLHLAAFIGHLEIA 96

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 89.8 bits (224), Expect = 5e-24
 Identities = 27/83 (32%), Positives = 44/83 (53%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  A  +  +E V  L   G  +++ D+ G T LH+A+  GHL I E L+  G D+NA 
Sbjct: 50  PLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109

Query: 85  NEEKNTPLHYACLNGHTEVAKKL 107
           ++   T    +  NG+ ++A+ L
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 48.9 bits (118), Expect = 2e-08
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLI 75
            L  AA    +E    L   G  ++++D  G+TA  ++  NG+  + E L 
Sbjct: 83  PLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  112 bits (282), Expect = 1e-31
 Identities = 26/121 (21%), Positives = 57/121 (47%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            ++ A  Y  ++ V  L S G  ++ +D++    LH A+ +G + I E L+    D++A 
Sbjct: 114 PMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV 173

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAV 144
           N   ++PLH A      +     +   +++++ N   +TP+  A    ++     ++ A+
Sbjct: 174 NIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233

Query: 145 A 145
            
Sbjct: 234 Q 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  109 bits (274), Expect = 2e-30
 Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 1/114 (0%)

Query: 25  ALLAAARYDDIEDVISLASAG-VPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA 83
            L  AA+    E V  L S G + ++ +D  G T +  A+   H+ +V+ L+ +G DIN 
Sbjct: 80  CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI 139

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            + E+N  LH+A  +G  ++A+ L+ +  ++  +N H  +P+  A    + D +
Sbjct: 140 RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV 193

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  109 bits (274), Expect = 2e-30
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 1/114 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L AAA    ++    L  AG  +D+     RT L  A+ N HL  V+YLI  G  ++  
Sbjct: 14  PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGA-NISVLNSHEQTPIDEALSRGKMDII 137
           + E +T LH A   GH EV + L+ +G  +++  +    TP+  A     +D++
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  102 bits (257), Expect = 7e-28
 Identities = 22/89 (24%), Positives = 37/89 (41%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA    ++    L +A   L + +  G + LH+A+       V   + R  D+   
Sbjct: 147 CLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK 206

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGAN 113
           N+E  TPL  A LN     A ++  +  +
Sbjct: 207 NKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  100 bits (252), Expect = 3e-27
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 49  DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
             +    R+ LH A+  GH+ I   L+  G +I+  +E++ TPL  A  N H E  K L+
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64

Query: 109 LSGANISVLNSHEQTPIDEALSRGKMDII 137
            +GA +   ++   T +  A  +G  +++
Sbjct: 65  KAGALVDPKDAEGSTCLHLAAKKGHYEVV 93

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 63.6 bits (156), Expect = 3e-13
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 79  VDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           ++    ++ K +PLH A   GH ++   LV +GANI   +  ++TP+ EA     ++ +
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  108 bits (273), Expect = 1e-31
 Identities = 36/100 (36%), Positives = 56/100 (56%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA+    E+V  L S G  ++++   G T LH+A+ NGH  IV+ L+ +G D+NA 
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTP 124
           +++ NTP H A  NGH E+ K L   GA+++  +      
Sbjct: 72  SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 97.8 bits (245), Expect = 2e-27
 Identities = 33/89 (37%), Positives = 49/89 (55%)

Query: 49  DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
                 G T LH A+ NGH   V+ L+ +G D+NA +++ NTPLH A  NGH E+ K L+
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 109 LSGANISVLNSHEQTPIDEALSRGKMDII 137
             GA+++  +    TP   A   G  +I+
Sbjct: 63  AKGADVNARSKDGNTPEHLAKKNGHHEIV 91

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 77.4 bits (192), Expect = 1e-19
 Identities = 22/70 (31%), Positives = 35/70 (50%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA+    E V  L + G  ++++   G T  H+A  NGH  IV+ L  +G D+NA 
Sbjct: 45  PLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104

Query: 85  NEEKNTPLHY 94
           +   +   H+
Sbjct: 105 SWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 53.2 bits (129), Expect = 4e-10
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 78  GVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
           G      +++ NTPLH A  NGH E  KKL+  GA+++  +    TP+  A   G  +I
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEI 57

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  114 bits (288), Expect = 1e-31
 Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 22  NIDALLAAARYDDIEDVIS-LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
             D LL AAR  + E +++ L    V   + D +  T LH+A+    + IV+ L+  G D
Sbjct: 24  KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83

Query: 81  INASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           ++A ++    PLH AC  GH EV + L+  GA ++ ++  + TP+ EA S+ ++++ 
Sbjct: 84  VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVC 140

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  114 bits (287), Expect = 2e-31
 Identities = 34/113 (30%), Positives = 55/113 (48%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA Y+ +  V  L   G  + +KD  G   LH A + GH  + E L+  G  +NA 
Sbjct: 61  PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM 120

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           +  + TPLH A      EV   L+  GA+ +++N H ++ +D A +    + +
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  106 bits (267), Expect = 1e-28
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 24  DALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLG---IVEYLIGRGVD 80
            +LL AAR  D+  V    +  +    +     TALH A A+ H     + E L+ +G +
Sbjct: 180 HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN 239

Query: 81  INASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           +N  N++  TPLH A    H +V + L   GA ++ L+S  QT +  A   G +   
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTC 296

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  104 bits (261), Expect = 1e-27
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 3/107 (2%)

Query: 25  ALLAAAR--YDDIEDVIS-LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDI 81
           AL  A    +   + V   L   G  ++ K+    T LH+A+   H  ++E L   G  +
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM 273

Query: 82  NASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
           NA +    T LH A L GH +  + L+  G++ S+++    T     
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 94.5 bits (236), Expect = 5e-24
 Identities = 18/108 (16%), Positives = 34/108 (31%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  A  Y   E    L   G  +++ D    T LH A++   + +   L+  G D    
Sbjct: 94  PLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV 153

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRG 132
           N    + +  A      E         + +      +   + + L+  
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALE 201

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 93.7 bits (234), Expect = 9e-24
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 1/98 (1%)

Query: 41  LASAGVPLDSKDSQGRTALHMASANGHL-GIVEYLIGRGVDINASNEEKNTPLHYACLNG 99
           LA             +  L  A+ +G+   ++  L    V+ +AS+  K+TPLH A    
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN 69

Query: 100 HTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
              + + L+  GA++   +     P+  A S G  ++ 
Sbjct: 70  RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVT 107

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 87.6 bits (218), Expect = 2e-21
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA     + +  L   G  +++ DS G+TALH A+  GHL     L+  G D +  
Sbjct: 250 PLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII 309

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQT 123
           + +  T           E  ++++     +   +   + 
Sbjct: 310 SLQGFTAAQMG-----NEAVQQILSESTPMRTSDVDYRL 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 70.2 bits (173), Expect = 4e-15
 Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 12/114 (10%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA  + +E    L S G      +  G++A+ MA        + Y           
Sbjct: 127 PLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF--------- 177

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIID 138
             + ++ L  A         KK +             +T +  A++        
Sbjct: 178 --KGHSLLQAAR-EADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQ 228

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 63.3 bits (155), Expect = 9e-13
 Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 7/75 (9%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL  AA    ++    L S G        QG TA  M +       V+ ++     +  S
Sbjct: 283 ALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE-----AVQQILSESTPMRTS 337

Query: 85  NEEKNTPLHYACLNG 99
           +   +  L  A   G
Sbjct: 338 D--VDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.9 bits (128), Expect = 4e-09
 Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 14/84 (16%)

Query: 55  GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY-ACLNGHTEVAKKLVLSGAN 113
           G++AL              L         + E K   L   A      ++   L     N
Sbjct: 4   GKSALD-------------LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN 50

Query: 114 ISVLNSHEQTPIDEALSRGKMDII 137
               +  + TP+  A    ++ I+
Sbjct: 51  CHASDGRKSTPLHLAAGYNRVRIV 74

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  111 bits (281), Expect = 2e-31
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 1/114 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA- 83
            ++ A +Y   E    L  AG  +   D +  T LH A+ N  + +V+Y I +G  ++  
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
             +  +TPLH+A   GH  +  +L+  GA+ S+++    + I  A   G   I+
Sbjct: 72  GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIV 125

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  109 bits (276), Expect = 1e-30
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGH-LGIVEYLIGRGVDINA 83
            +  AA++     V  L + G  +D  D  G T L  A+   H +     L+   V +N 
Sbjct: 112 CIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL 171

Query: 84  -SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
                KNT LH+A L G+T V   L+ +GAN+   N   ++ +D A  R  + +I
Sbjct: 172 GDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMI 226

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  106 bits (268), Expect = 1e-29
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  A R   +  V+ L   G      D +G + +H+A+  GH  IV YLI +G D++  
Sbjct: 79  PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138

Query: 85  NEEKNTPLHYACLNGHT-EVAKKLVLSGANISVL-NSHEQTPIDEALSRGKMDII 137
           ++   TPL +A    H+ +  + L+    ++++    H+ T +  A+  G   +I
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVI 193

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  105 bits (264), Expect = 6e-29
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDS-QGRTALHMASANGHLGIVEYLIGRGVDINA 83
            L  AA  + I+ V    S G  +D        T LH A+  GHL +V  L+  G D + 
Sbjct: 45  LLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL 104

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTP 124
            + E  + +H A   GHT +   L+  G ++ +++ +  TP
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 98.3 bits (246), Expect = 3e-26
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 48  LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
           +   D      +  A+  G       L+  G D+   ++E  T LH+A +N   ++ K  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 108 VLSGANI-SVLNSHEQTPIDEALSRGKMDII 137
           +  GA +  +      TP+  A  +G + ++
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMV 92

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 94.4 bits (236), Expect = 7e-25
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 2/92 (2%)

Query: 25  ALLAAARYDDIEDVIS-LASAGVPLDSKDSQ-GRTALHMASANGHLGIVEYLIGRGVDIN 82
            L+ AA      D    L +  V ++  D     TALH A   G+  ++  L+  G +++
Sbjct: 145 PLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD 204

Query: 83  ASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
           A N +  + L  A    +  +   L  +    
Sbjct: 205 AQNIKGESALDLAKQRKNVWMINHLQEARQAK 236

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 62.8 bits (154), Expect = 7e-13
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL  A    +   +  L  AG  +D+++ +G +AL +A    ++ ++ +L          
Sbjct: 180 ALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239

Query: 85  N 85
           N
Sbjct: 240 N 240

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  111 bits (280), Expect = 2e-31
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 3/116 (2%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            LL ++   + + V  +          + +G TALH A   GH  IV++L+  GV++NA+
Sbjct: 40  LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQ---TPIDEALSRGKMDII 137
           + +  TPLH A    + +V K LV SGA +  +   +        E +  G     
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 155

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 99.2 bits (248), Expect = 1e-26
 Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 3/130 (2%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL  A      E V  L   GV +++ DS G T LH A++  ++ + ++L+  G  + A 
Sbjct: 73  ALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132

Query: 85  NEEKN---TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN 141
                            G+T+ ++ L      + ++N      + +   +   ++     
Sbjct: 133 TYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEG 192

Query: 142 TAVAQLELGG 151
             +  +    
Sbjct: 193 DCMTIIHRED 202

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 91.5 bits (228), Expect = 1e-23
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 52  DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
           +  G+ +L               I  G+ +   N      L  + L G  ++ ++++   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 112 ANISVLNSHEQTPIDEALSRGKMDI 136
            + S+ N    T +  A+  G  +I
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEI 85

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 75.3 bits (186), Expect = 2e-17
 Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 25  ALLAAARYDDIEDVISLASAGVPL---DSKDSQGRTALHMASANGHLGIVEYLIGRGVDI 81
            L  AA  ++++    L  +G  +      D Q           G+    ++L G    +
Sbjct: 106 PLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 165

Query: 82  NASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRG 132
              N+     L         E+  K    G  +++++  ++  I+   +R 
Sbjct: 166 GIMNKGVIYALWDYEPQNDDELPMK---EGDCMTIIHREDEDEIEWWWARL 213

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  108 bits (273), Expect = 3e-31
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 12/138 (8%)

Query: 1   MEQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALH 60
           ME  A  S+  +             L  AA    +E+V +L  AG   ++ +S GR  + 
Sbjct: 1   MEPAAGSSMEPSAD----------WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQ 50

Query: 61  MASANGHLGIVEYLIGRGVDINASNEEKNT-PLHYACLNGHTEVAKKLVLSGANISVLNS 119
           +    G   + E L+  G + N ++    T P+H A   G  +    L  +GA + V ++
Sbjct: 51  VM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA 109

Query: 120 HEQTPIDEALSRGKMDII 137
             + P+D A   G  D+ 
Sbjct: 110 WGRLPVDLAEELGHRDVA 127

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  109 bits (276), Expect = 4e-31
 Identities = 34/113 (30%), Positives = 58/113 (51%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L+ A        +  L      L+ KD +G TAL  A  N  LGI E L+ +G ++N  
Sbjct: 38  PLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK 97

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           +    TPL ++ + G++E++  L+  GAN++  N   +TP+  A   G+ +I+
Sbjct: 98  DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIV 150

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  109 bits (274), Expect = 6e-31
 Identities = 34/113 (30%), Positives = 57/113 (50%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL+ A + + +     L S G  +++KD  G+T L  +   G+  +  +L+  G ++N  
Sbjct: 71  ALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDR 130

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           N E  TPL  A   G +E+ KKL+  GA+IS  +    T    A   G+ ++I
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI 183

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 99.8 bits (250), Expect = 2e-27
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 6/113 (5%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
                             +     + +DS  RT L +A   G    ++ L+     +   
Sbjct: 11  VEKIKDEKS------INQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK 64

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           + E +T L +A  N    +A+KL+  G+N++  +   +TP+  ++  G  ++ 
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 91.3 bits (228), Expect = 4e-24
 Identities = 23/84 (27%), Positives = 37/84 (44%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L+ +  +   E    L   G  ++ ++ +G T L +AS  G   IV+ L+  G DI+A 
Sbjct: 104 PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR 163

Query: 85  NEEKNTPLHYACLNGHTEVAKKLV 108
           +    T    A + G  EV K   
Sbjct: 164 DLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 72.4 bits (179), Expect = 7e-17
 Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 6/88 (6%)

Query: 50  SKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVL 109
             D  G     +         +++L       N  +    TPL  AC+ G      KLV 
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLVE 56

Query: 110 SGANISVLNSHEQTPIDEALSRGKMDII 137
           +   +   +    T +  A+   ++ I 
Sbjct: 57  NFDKLEDKDIEGSTALIWAVKNNRLGIA 84

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  110 bits (277), Expect = 5e-31
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            LL AA   ++E V             + +G TALH A    +  IV++LI  G ++N+ 
Sbjct: 24  LLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP 83

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHE-QTPIDEA 128
           +    TPLH A     T +   LV  GA I      +  T  ++ 
Sbjct: 84  DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKC 128

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 96.6 bits (241), Expect = 1e-25
 Identities = 24/89 (26%), Positives = 37/89 (41%)

Query: 49  DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
                     L  A+  G L +V+  +    D +  NEE  T LH A    +  +   L+
Sbjct: 15  RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLI 74

Query: 109 LSGANISVLNSHEQTPIDEALSRGKMDII 137
            +GAN++  +SH  TP+  A S     I 
Sbjct: 75  TAGANVNSPDSHGWTPLHCAASCNDTVIC 103

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 74.6 bits (184), Expect = 2e-17
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 4/116 (3%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQ-GRTALHMASA--NGHLGIVEYLIGRGVDI 81
            L  AA  +D    ++L   G  + +     G TA         G+     YL      +
Sbjct: 90  PLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM 149

Query: 82  NASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
              N      L         E+          +   +  E+T    A   G+   +
Sbjct: 150 GLMNSGAVYALWDYSAEFGDEL-SFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 68.1 bits (167), Expect = 6e-15
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 3/100 (3%)

Query: 27  LAAARYDDIEDVIS-LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
                 +   D  + LA     +   +S    AL   SA      + +  G  V +   +
Sbjct: 127 KCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD-ELSFREGESVTVLRRD 185

Query: 86  EEKNTPLHYACLNGHTE-VAKKLVLSGANISVLNSHEQTP 124
             + T   +A L+G    V +        +    S  +  
Sbjct: 186 GPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHH 225

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 71  VEYLIGRGVDINASNEEKNTP---LHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDE 127
           +  ++ +      +   +  P   L  A L G  EV ++ V    + S  N    T +  
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 128 ALSRGKMDII 137
           A+      I+
Sbjct: 61  AICGANYSIV 70

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  108 bits (273), Expect = 5e-31
 Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 1/114 (0%)

Query: 25  ALLAAARYDDIEDVISLASA-GVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA 83
            LL AA+  D+E V  L +   V     + +  T LH A+    + +VEYL+  G D++A
Sbjct: 11  QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            ++    PLH AC  GH EVA+ LV  GA ++V +  + TP+ EA ++GK +I 
Sbjct: 71  KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 124

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  107 bits (271), Expect = 8e-31
 Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 1/114 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA Y+ +  V  L   G  + +KD  G   LH A + GH  + E L+  G  +N +
Sbjct: 45  PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 104

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIID 138
           +  K TPLH A   G  E+ K L+  GA+ +  N    TP+D     G  DI D
Sbjct: 105 DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQD 157

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 90.1 bits (225), Expect = 7e-24
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  A  Y   E    L   G  ++  D    T LH A+A G   I + L+  G D    
Sbjct: 78  PLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 137

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGA 112
           N + NTPL     +G T++   L    A
Sbjct: 138 NRDGNTPLDLVK-DGDTDIQDLLRGDAA 164

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  109 bits (276), Expect = 8e-31
 Identities = 32/113 (28%), Positives = 54/113 (47%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L+ AAR      +  L ++   +++ D  G++ALH A+A  ++     L+  G + +  
Sbjct: 95  PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 154

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           N  + TPL  A   G  E AK L+   AN  + +  ++ P D A  R   DI+
Sbjct: 155 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 207

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  104 bits (262), Expect = 7e-29
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 1/114 (0%)

Query: 25  ALLAAARYDDIEDVISLASAG-VPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA 83
            L AA   D       L       LD++   G T L +A+     G++E LI    D+NA
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            ++   + LH+A    + + A  L+ +GAN  + N+ E+TP+  A   G  +  
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETA 174

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  103 bits (259), Expect = 2e-28
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRG-VDINA 83
           AL  AARY   +    L  A    + +D+ GRT LH A +    G+ + LI     D++A
Sbjct: 28  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 87

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
              +  TPL  A       + + L+ S A+++ ++   ++ +  A +   +D  
Sbjct: 88  RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 141

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 96.3 bits (241), Expect = 1e-25
 Identities = 17/91 (18%), Positives = 37/91 (40%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL  AA  ++++  + L   G   D ++++  T L +A+  G     + L+    + + +
Sbjct: 128 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 187

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANIS 115
           +     P   A    H ++ + L       S
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 94.4 bits (236), Expect = 5e-25
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 49  DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
           +  D  G TALH+A+        + L+    D N  +    TPLH A       V + L+
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78

Query: 109 LSGA-NISVLNSHEQTPIDEALSRGKMDII 137
            + A ++        TP+  A       ++
Sbjct: 79  RNRATDLDARMHDGTTPLILAARLAVEGML 108

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 57.0 bits (139), Expect = 7e-11
 Identities = 16/69 (23%), Positives = 19/69 (27%), Gaps = 7/69 (10%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AAR    E    L       D  D   R    +A    H  IV  L    +     
Sbjct: 161 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR--- 217

Query: 85  NEEKNTPLH 93
               +  LH
Sbjct: 218 ----SPQLH 222

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  111 bits (279), Expect = 1e-30
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 1/113 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            +  AAR   +E V SL + G  +D K S   T L++A  N     V+ L+  G D+N  
Sbjct: 160 PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG 219

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
             +  +PLH        E+A  L+  GA+    N+  + P++       +  +
Sbjct: 220 KGQD-SPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  110 bits (277), Expect = 2e-30
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 1/113 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            +  AA +     + +L S G  ++   +   + LH A   GHL  V+ L+  G  +N  
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
             + +TPL  AC++G  +    L+  GA++    S   +PI EA  RG ++ +
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECV 173

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  102 bits (256), Expect = 2e-27
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 2/113 (1%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  A      + V  L   G  +   +S   + +H A+  GH+  V  LI  G +I+  
Sbjct: 128 PLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHK 186

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
                TPL+ AC N      KKL+ SGA+++       +P+   +     ++ 
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQ-DSPLHAVVRTASEELA 238

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 99.9 bits (250), Expect = 2e-26
 Identities = 27/91 (29%), Positives = 43/91 (47%)

Query: 47  PLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKK 106
           PL        + +H A+ +GH   +  LI +G  +N    +  +PLH ACL GH    K 
Sbjct: 51  PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKI 110

Query: 107 LVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           L+  GA ++ + +   TP+  A   G  D +
Sbjct: 111 LLKHGAQVNGVTADWHTPLFNACVSGSWDCV 141

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 86.4 bits (215), Expect = 2e-21
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  A        V  L  +G  ++ +     + LH         +   L+  G D  A 
Sbjct: 193 PLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAK 251

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
           N E   P+              L   GA++
Sbjct: 252 NAEGKRPVELVPPESP-LAQLFLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 71.4 bits (176), Expect = 9e-16
 Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 12/114 (10%)

Query: 29  AARYDDIEDVISLASAGVPLDSKDSQ-----GRTALHMASANGHLGIVEYLIGRGVDINA 83
            + +        L   G  + S D +     G          G       L+   +  +A
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR-----LLSNPLMGDA 56

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            ++   +P+H A ++GH    + L+  G  ++++ +   +P+ EA   G +  +
Sbjct: 57  VSDW--SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCV 108

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 52.9 bits (128), Expect = 3e-09
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA 83
            L A  R    E    L   G    +K+++G+  + +      L    +L   G  +  
Sbjct: 225 PLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL-AQLFLEREGASLPK 282

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  109 bits (275), Expect = 1e-30
 Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQ-GRTALHMASANGHLGIVEYLIGRGVDINA 83
           AL  A   +  E V  L   G  +D+ D + GR+ L  A  N  L +V+ L+  G ++NA
Sbjct: 119 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 178

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
                ++ LH A   G   + + LV SGA+ S+ N H  TP+  A SR  +DI+
Sbjct: 179 QMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 232

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  102 bits (257), Expect = 6e-28
 Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 5/118 (4%)

Query: 25  ALLAAARYDDIEDVISLASAGVP----LDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
           A   A  +     + +L  +  P    L++++  G TALH+A        V+ L+ RG D
Sbjct: 82  AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD 141

Query: 81  INASNEEK-NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           I+A + +   +PL +A  N    + + L+  GAN++       + +  A  RG + ++
Sbjct: 142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLV 199

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  102 bits (256), Expect = 1e-27
 Identities = 23/89 (25%), Positives = 39/89 (43%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L+ A   + +  V  L   G  ++++   G +ALH AS  G L +V  L+  G D +  
Sbjct: 153 PLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK 212

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGAN 113
           N   +TPL  A      ++ +      A+
Sbjct: 213 NCHNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  101 bits (255), Expect = 2e-27
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 8/121 (6%)

Query: 25  ALLAAARYDDIEDV---IS-LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
            L  A    ++  V   ++     G  LD  ++  +T LH+A       +V  L+  G  
Sbjct: 12  PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 71

Query: 81  INASNEEKNTPLHYACLNGHTEVAKKLVLSGA----NISVLNSHEQTPIDEALSRGKMDI 136
             A +    T  H AC +      + L+ S A    ++   N    T +  A++    + 
Sbjct: 72  PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 131

Query: 137 I 137
           +
Sbjct: 132 V 132

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 96.4 bits (241), Expect = 2e-25
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 48  LDSKDSQGRTALHMASANGHLGIVEYLI----GRGVDINASNEEKNTPLHYACLNGHTEV 103
               D  G T LH+A   G+L  V  L+      G +++  N  + TPLH A +     V
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 104 AKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            + LV +GA+   L+ H QT    A        +
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCL 95

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  110 bits (277), Expect = 2e-30
 Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 1/115 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDS-QGRTALHMASANGHLGIVEYLIGRGVDINA 83
            L  A  + D E V  L  AG  L+  +   GRT LH+A       ++E L+  G D  A
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA 220

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIID 138
                 TPL  A L  +  +A+ L   GA        + +P   + S    D  D
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRD 275

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  100 bits (251), Expect = 9e-27
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 25  ALLAAARYDDIEDVISLASAG---VPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDI 81
           AL  A  +     +  L         LD ++  G+TALH+A+  G    VE L   G  +
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71

Query: 82  NASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
             +    +T LH AC       A  L+    +   
Sbjct: 72  LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPR 106

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 96.8 bits (242), Expect = 3e-25
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 48  LDSKDSQGRTALHMASANGHLGIVEYLIGRGVD---INASNEEKNTPLHYACLNGHTEVA 104
                  G TALH+A  + H   +++L+G       ++  N+   T LH A + G     
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 105 KKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           +KL  +GA + V      T +  A         
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCA 94

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 91.1 bits (227), Expect = 4e-23
 Identities = 14/83 (16%), Positives = 26/83 (31%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  A        +  L  AG    ++   GRT L  A    +  +   L   G      
Sbjct: 195 PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPED 254

Query: 85  NEEKNTPLHYACLNGHTEVAKKL 107
             +K +P   +  +  ++   + 
Sbjct: 255 GGDKLSPCSSSGSDSDSDNRDEG 277

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 83.7 bits (208), Expect = 2e-20
 Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 14/127 (11%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL  AA   +   V  L +AG  +   +  G TALH+A           L+         
Sbjct: 48  ALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRD 107

Query: 85  NEEKNTP--------------LHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALS 130
             +                     +  N   E   +       +   N    TP+  A+ 
Sbjct: 108 ASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI 167

Query: 131 RGKMDII 137
               +++
Sbjct: 168 HKDAEMV 174

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 77.2 bits (191), Expect = 5e-18
 Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 15/128 (11%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRT--------------ALHMASANGHLGI 70
           AL  A R         L           S                  A   +  N     
Sbjct: 81  ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140

Query: 71  VEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVL-NSHEQTPIDEAL 129
                   + + A N + +TPLH A ++   E+ + L  +GA+++    +  +TP+  A+
Sbjct: 141 EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200

Query: 130 SRGKMDII 137
                 ++
Sbjct: 201 EAQAASVL 208

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  106 bits (267), Expect = 3e-30
 Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 1/113 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L +AA   D+E + SL    V +++++  GRTAL +    G+  I   L+ RG + +  
Sbjct: 8   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDLK 66

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           +      +H A   G  +  + L+   A++++ ++    P+  A   G + ++
Sbjct: 67  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  103 bits (259), Expect = 5e-29
 Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 1/112 (0%)

Query: 27  LAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNE 86
           L   +  + E    L   G   D KD  G   +H A+  G L  ++ L+    D+N  + 
Sbjct: 42  LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN 101

Query: 87  EKNTPLHYACLNGHTEVAKKLVLSGA-NISVLNSHEQTPIDEALSRGKMDII 137
           E N PLH A   GH  V + LV   A N+   N    T  D A   G+ +++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 94.0 bits (235), Expect = 2e-25
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRG-VDINA 83
            +  AAR   ++ + +L      ++ +D++G   LH+A+  GHL +VE+L+     ++  
Sbjct: 73  VIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGA 112
            N + +T    A L G  EV   +  +GA
Sbjct: 133 RNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 91.3 bits (228), Expect = 3e-24
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 55  GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
               L  A+A G L  +  L+   V++NA N    T L      G+ E+A++L+L GAN 
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP 63

Query: 115 SVLNSHEQTPIDEALSRGKMDII 137
            + +      I +A   G +D +
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTL 86

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 45.4 bits (109), Expect = 6e-07
 Identities = 9/40 (22%), Positives = 14/40 (35%)

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTP 124
            E     L  A   G  E    L+ +  N++  N   +T 
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTA 41

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  109 bits (275), Expect = 3e-30
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQ-GRTALHMASANGHLGIVEYLIGRGVDINA 83
            L+ A + +D++ V  L   G  ++ ++ + G T LH A       IVE L+  G D   
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
             +   TP   A + G  ++ K  +  GA+++  + +  T   EA   GK+  +
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  102 bits (258), Expect = 1e-27
 Identities = 20/100 (20%), Positives = 40/100 (40%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  A +    + V  L   G     +   G T   +A+  G + +++  + +G D+N  
Sbjct: 42  PLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC 101

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTP 124
           +    T    A + G  +  K L   GAN+++    ++  
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ 141

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 97.9 bits (245), Expect = 9e-26
 Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 25  ALLAAARYDDIEDV-ISLASAGVPLDSKDSQGRTALHMASANGHLG----IVEYLIGRGV 79
           AL+ AA    +E + I L   G  +++ D+ GR AL  A  +        I   L+  G 
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

Query: 80  DINASNEEKNTPLHYACLNGHTEVAKKLVLS-GANISVLNSHEQTPIDEALSRGKMDII 137
           D+N   E   TPL  A    H  + ++L+      I+  +S  +T +  A+      I 
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 97.9 bits (245), Expect = 9e-26
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 11/127 (8%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
             L AA    ++ +    S G  ++  D  G TA   A+  G +  +++L  RG ++N  
Sbjct: 75  PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 134

Query: 85  NEEK----------NTPLHYACLNGHTEVAKKLVL-SGANISVLNSHEQTPIDEALSRGK 133
            + K           T L  A   GH EV K L+   GA+++  ++  +  +  AL    
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 194

Query: 134 MDIIDAI 140
              ++AI
Sbjct: 195 DSDVEAI 201

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 96.8 bits (242), Expect = 3e-25
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 25  ALLAAARYDDIEDVISLA----SAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGR-GV 79
           AL+ A    D  DV ++       G  ++ +  +G+T L +A    HLG+V+ L+ +  +
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244

Query: 80  DINASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
           +IN ++ +  T L  A      ++A+ L   GA+ 
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 90.6 bits (226), Expect = 5e-23
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 15/128 (11%)

Query: 25  ALLAAARYDDIE----------DVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYL 74
           A + AA Y  ++          +V          +     G TAL  A+  GH+ +++ L
Sbjct: 108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

Query: 75  IG-RGVDINASNEEKNTPLHYACLNGHT----EVAKKLVLSGANISVLNSHEQTPIDEAL 129
           +   G D+NA +      L +A L+        +   L+  GA+++V     +TP+  A+
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227

Query: 130 SRGKMDII 137
            +  + ++
Sbjct: 228 EKKHLGLV 235

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.5 bits (153), Expect = 1e-12
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 25  ALLAAARYDDIEDVISL-ASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA 83
            L+ A     +  V  L     + ++  DS G+TAL +A       I E L  RG   + 
Sbjct: 222 PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281

Query: 84  SN 85
            +
Sbjct: 282 GD 283

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  108 bits (273), Expect = 4e-30
 Identities = 32/113 (28%), Positives = 54/113 (47%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L+ AAR      +  L ++   +++ D  G++ALH A+A  ++     L+  G + +  
Sbjct: 127 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 186

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           N  + TPL  A   G  E AK L+   AN  + +  ++ P D A  R   DI+
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 239

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  106 bits (268), Expect = 2e-29
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 1/114 (0%)

Query: 25  ALLAAARYDDIEDVISLASAG-VPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA 83
            L AA   D       L       LD++   G T L +A+     G++E LI    D+NA
Sbjct: 93  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 152

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            ++   + LH+A    + + A  L+ +GAN  + N+ E+TP+  A   G  +  
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETA 206

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  102 bits (258), Expect = 6e-28
 Identities = 17/90 (18%), Positives = 38/90 (42%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL  AA  ++++  + L   G   D ++++  T L +A+  G     + L+    + + +
Sbjct: 160 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 219

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
           +     P   A    H ++ + L L   + 
Sbjct: 220 DHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 91.4 bits (228), Expect = 2e-23
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 49  DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
           +  D  G TALH+A+        + L+    D N  +    TPLH A       V + L+
Sbjct: 51  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110

Query: 109 LSGA-NISVLNSHEQTPIDEALSRGKMDII 137
            + A ++        TP+  A       ++
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEGML 140

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 82.9 bits (206), Expect = 3e-20
 Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 14/103 (13%)

Query: 49  DSKDSQGRTALHMASANG-------------HLGIVEYLIGRGVDI-NASNEEKNTPLHY 94
           + +   G T L +AS +G                ++   I +G  + N ++    T LH 
Sbjct: 4   NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL 63

Query: 95  ACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           A     ++ AK+L+ + A+ ++ ++  +TP+  A+S     + 
Sbjct: 64  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF 106

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.6 bits (148), Expect = 5e-12
 Identities = 14/61 (22%), Positives = 17/61 (27%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AAR    E    L       D  D   R    +A    H  IV  L       +  
Sbjct: 193 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252

Query: 85  N 85
           +
Sbjct: 253 H 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.4 bits (106), Expect = 3e-06
 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 14/73 (19%)

Query: 79  VDINASNEEKNTPLHYACLNG-------------HTEVAKKLVLSGANIS-VLNSHEQTP 124
           +D+N    +  TPL  A  +G                V    +  GA++    +   +T 
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 125 IDEALSRGKMDII 137
           +  A    + D  
Sbjct: 61  LHLAARYSRSDAA 73

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  105 bits (264), Expect = 4e-30
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 2/114 (1%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA    +E V  L  AG   ++ +  GR  + +    G   + E L+  G + N +
Sbjct: 15  GLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQVAELLLLHGAEPNCA 73

Query: 85  NEEKNT-PLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           +    T P+H A   G  +    L  +GA + V ++  + P+D A  +G  DI 
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIA 127

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 97.1 bits (243), Expect = 7e-27
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 44  AGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEV 103
               +          L  A+A G +  V  L+  G D NA N     P+      G  +V
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQV 59

Query: 104 AKKLVLSGANISVLNSHEQT-PIDEALSRGKMDII 137
           A+ L+L GA  +  +    T P+ +A   G +D +
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTL 94

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 91.3 bits (228), Expect = 1e-24
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 41  LASAGVPLDSKDSQGRT-ALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNG 99
           L   G   +  D    T  +H A+  G L  +  L   G  ++  +     P+  A   G
Sbjct: 63  LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQG 122

Query: 100 HTEVAKKLVLSGAN 113
           H ++A+ L  +  +
Sbjct: 123 HRDIARYLHAATGD 136

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  104 bits (261), Expect = 5e-30
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 29  AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
            + +        L   G       S     L  A+  G    V  L+  G D+ A ++  
Sbjct: 1   GSSHHHHHHSSGLVPRGS---HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 89  NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
           +TPLH A  NGH EV K L+ +GA++   +   +T  D ++  G  D+ + +
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 82.6 bits (205), Expect = 1e-21
 Identities = 29/83 (34%), Positives = 47/83 (56%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            LL AAR    ++V  L + G  + +KD  G T LH+A+ NGHL +V+ L+  G D+ A 
Sbjct: 27  KLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86

Query: 85  NEEKNTPLHYACLNGHTEVAKKL 107
           ++   T    +  NG+ ++A+ L
Sbjct: 87  DKFGKTAFDISIDNGNEDLAEIL 109

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  102 bits (256), Expect = 3e-29
 Identities = 41/88 (46%), Positives = 55/88 (62%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AAR   +E V  L  AG  +++KD  GRT LH+A+ NGHL +V+ L+  G D+NA 
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGA 112
           ++   TPLH A  NGH EV K L+ +GA
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 99.4 bits (249), Expect = 2e-28
 Identities = 34/83 (40%), Positives = 55/83 (66%)

Query: 55  GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
           GRT LH+A+ NGHL +V+ L+  G D+NA ++   TPLH A  NGH EV K L+ +GA++
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 115 SVLNSHEQTPIDEALSRGKMDII 137
           +  + + +TP+  A   G ++++
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVV 84

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  104 bits (261), Expect = 5e-29
 Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 2/113 (1%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
               AAR  D +  +S       +D+ D  GRTAL   +  G    V  L   G D++  
Sbjct: 47  PWWTAARKADEQ-ALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 105

Query: 85  NEEKN-TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
           +     T LH A      EV + LV  GA+I V +    T ++ A    K   
Sbjct: 106 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP 158

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 97.2 bits (243), Expect = 2e-26
 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQ-GRTALHMASANGHLGIVEYLIGRGVDINA 83
           ALL  A     + V  LA AG  LD +D + G TALHMA+      +VE L+  G DI  
Sbjct: 79  ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 138

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
            +E   T L  A     T      +  G  I
Sbjct: 139 EDERGLTALELAREILKTTPKGNPMQFGRRI 169

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 81.8 bits (203), Expect = 2e-20
 Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 4/87 (4%)

Query: 51  KDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLS 110
              +G     +   +GH            D+ +  E   TP   A      +   +L L 
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQALSQL-LE 65

Query: 111 GANISVLNSHEQTPIDEALSRGKMDII 137
             ++  ++ + +T +      G    +
Sbjct: 66  DRDVDAVDENGRTALLFVAGLGSDKCV 92

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 57.9 bits (141), Expect = 2e-11
 Identities = 17/59 (28%), Positives = 24/59 (40%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA 83
           AL  AA Y   E V +L   G  ++ +D +G TAL +A            +  G  I  
Sbjct: 113 ALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 42.5 bits (101), Expect = 8e-06
 Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 3/60 (5%)

Query: 78  GVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            +  + +  E          +GH+          A++    S  +TP   A  +     +
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQAL 60

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  103 bits (259), Expect = 2e-28
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 3/116 (2%)

Query: 25  ALLAAARYDDIEDVISLAS--AGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDIN 82
               A    ++E V SL        L+   +QG T LH+A       + ++LI  G  + 
Sbjct: 75  PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR 134

Query: 83  ASNEEKNTPLHYACLNGHTEVAKKLVLSGAN-ISVLNSHEQTPIDEALSRGKMDII 137
             ++    PLH A   G  ++ + L   G + ++  +    TP+  AL+ G  D  
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 190

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  103 bits (259), Expect = 3e-28
 Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 25  ALLAAARYDDIEDVIS-LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA 83
            L  A   ++   V   L S    L  KD  GR  LH + +     I  +L+ +  ++N 
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 84  SNEEKN---TPLHYACLNGHTEVAKKLV--LSGANISVLNSHEQTPIDEALSRGKMDII 137
            +   +   TP H AC  G+ EV K L       +++ + +   T +  A+ +   ++ 
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  100 bits (252), Expect = 3e-27
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 2/106 (1%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGV-DINA 83
            L  A      E    L   G  +  KD   +  LH A++ G L ++E L G G   +N 
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLS-GANISVLNSHEQTPIDEA 128
            +++  TPL +A   GH + A  LV   GA   ++++      D A
Sbjct: 170 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 86.3 bits (215), Expect = 7e-22
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 55  GRTALHMASANGHLGIV-EYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGAN 113
               LH A        V E L  +   +   +++   PLH++      E+   L+    N
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 114 ISVLNSHE---QTPIDEALSRGKMDII 137
           +++ +  +    TP   A S G ++++
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVV 88

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 75.2 bits (186), Expect = 1e-17
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 25  ALLAAARYDDIEDVISLASAGV-PLDSKDSQGRTALHMASANGHLGIVEYLIGR-GVDIN 82
            L  AA    ++ +  L   G   ++ +D QG T L  A A GH      L+ + G + +
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202

Query: 83  ASNEEKNTPLHYACLNGHTEVAKKLV 108
             + +       A    + +V K  +
Sbjct: 203 LVDNKGAKAEDVAL---NEQVKKFFL 225

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  104 bits (261), Expect = 4e-28
 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           A   A   +++  V +L +AG   +  +      LH A+      IV+ L+  G+D +  
Sbjct: 34  ASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQF 91

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVL-NSHEQTPIDEALSRGKMDII 137
           +++ NT L+YA  +G+ +  K  V     +     +  +T    A+    + I+
Sbjct: 92  DDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV 145

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  102 bits (257), Expect = 1e-27
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 27  LAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNE 86
           L+       + + S   +       D  G +A + A A+ ++ +V  L+  G   N    
Sbjct: 4   LSRINTWKSKQLKSF-LSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE- 61

Query: 87  EKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
               PLH A     T++ K L+ SG + S  +    T +  A+  G M  +
Sbjct: 62  -NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTV 111

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 94.9 bits (237), Expect = 1e-24
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 3/115 (2%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQG-RTALHMASANGHLGIVEYLIGRGVDINA 83
           AL  A    +++ V         L      G +T+ + A     + IV Y +        
Sbjct: 98  ALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI-PSTF 156

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTP-IDEALSRGKMDII 137
                 + +H    NGH ++   L+    + +  NS    P I  A+    ++++
Sbjct: 157 DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEML 211

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 94.1 bits (235), Expect = 3e-24
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           +   A   +D+  V    S   P     +   + +H+   NGH+ ++  L+      N +
Sbjct: 132 SFYHAVMLNDVSIVSYFLSEI-PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN 190

Query: 85  NEEKNTP-LHYACLNGHTEVAKKLVLSGANI 114
           N     P +  A  N   E+ + L     NI
Sbjct: 191 NSLLFIPDIKLAIDNKDIEMLQALFKYDINI 221

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 88.7 bits (221), Expect = 3e-22
 Identities = 17/126 (13%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRT-ALHMASANGHLGIVEYLIGRGVDINA 83
            +    +   ++ +I L       ++ +S      + +A  N  + +++ L    ++I  
Sbjct: 164 CIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY- 222

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISV------LNSHEQTPIDEALSRGKMDII 137
                 +      L    E+AK ++              L+  +   +DE +S+ K   +
Sbjct: 223 ------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRL 276

Query: 138 DAINTA 143
             +N  
Sbjct: 277 MYVNCV 282

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  102 bits (256), Expect = 6e-28
 Identities = 37/127 (29%), Positives = 60/127 (47%)

Query: 22  NIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDI 81
           NI     A      E    + +        D   RTALH A + GH  IVE+L+  GV +
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66

Query: 82  NASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN 141
           N  ++   +PLH A   G  E+ K L++ GA+++ +N +  TP+  A S+ + +I   + 
Sbjct: 67  NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126

Query: 142 TAVAQLE 148
              A  +
Sbjct: 127 EGGANPD 133

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 88.4 bits (219), Expect = 1e-22
 Identities = 39/124 (31%), Positives = 62/124 (50%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL  A      E V  L   GVP++ KD  G + LH+A++ G   IV+ L+ +G  +NA 
Sbjct: 43  ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV 102

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAV 144
           N+   TPLHYA      E+A  L+  GAN    + ++ T +  A ++G + ++  +    
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162

Query: 145 AQLE 148
           A   
Sbjct: 163 ASTN 166

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 84.1 bits (208), Expect = 6e-21
 Identities = 27/124 (21%), Positives = 54/124 (43%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA     E V +L   G  +++ +  G T LH A++     I   L+  G + +A 
Sbjct: 76  PLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAV 144
           +    T +H A   G+ ++   L+   A+ ++ ++   TP+  A    +++    + T  
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195

Query: 145 AQLE 148
           A + 
Sbjct: 196 ASIY 199

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 78.4 bits (193), Expect = 9e-19
 Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 2/129 (1%)

Query: 9   INRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHL 68
           + +       +      L  AA  +  E  + L   G   D+KD    TA+H A+A G+L
Sbjct: 93  LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152

Query: 69  GIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
            +V  L+      N  + E NTPLH AC     E AK LV  GA+I + N  E+TP+  A
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212

Query: 129 LSRGKMDII 137
             +G + +I
Sbjct: 213 --KGGLGLI 219

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 72.2 bits (177), Expect = 2e-16
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 2/108 (1%)

Query: 9   INRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHL 68
           +      +     +  A+  AA   +++ V  L       + +D++G T LH+A     +
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185

Query: 69  GIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
              ++L+ +G  I   N+E+ TPL  A   G   +  K +  G   S+
Sbjct: 186 EEAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEEASM 231

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  102 bits (256), Expect = 9e-28
 Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 2/114 (1%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
               AAR  D +  +S       +D+ D  GRTAL   +  G    V  L   G D++  
Sbjct: 48  PWWTAARKADEQ-ALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106

Query: 85  NEEKN-TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           +     T LH A      EV + LV  GA+I V +    T ++ A    K    
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPK 160

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 96.5 bits (241), Expect = 1e-25
 Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 4/115 (3%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQ-GRTALHMASANGHLGIVEYLIGRGVDINA 83
           ALL  A     + V  LA AG  LD +D + G TALHMA+      +VE L+  G DI  
Sbjct: 80  ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 139

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIID 138
            +E   T L  A     T      +  G  I      +   + E       ++ +
Sbjct: 140 EDERGLTALELAREILKTTPKGNPMQFGRRI---GLEKVINVLEGQVFEYAEVDE 191

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 78.0 bits (193), Expect = 2e-18
 Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 4/87 (4%)

Query: 51  KDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLS 110
              +G     +   +GH            D+ +  E   TP   A      +   +L L 
Sbjct: 11  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQALSQL-LE 66

Query: 111 GANISVLNSHEQTPIDEALSRGKMDII 137
             ++  ++ + +T +      G    +
Sbjct: 67  DRDVDAVDENGRTALLFVAGLGSDKCV 93

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 75.3 bits (186), Expect = 2e-17
 Identities = 18/114 (15%), Positives = 30/114 (26%), Gaps = 22/114 (19%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRG------ 78
           AL  AA Y   E V +L   G  ++ +D +G TAL +A            +  G      
Sbjct: 114 ALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE 173

Query: 79  ----------------VDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
                            +I     +     +        +      +  A    
Sbjct: 174 KVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVA 227

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 10/80 (12%), Positives = 21/80 (26%), Gaps = 10/80 (12%)

Query: 21  ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
           E +  +L    ++  E           +  K  +G+   ++                  +
Sbjct: 173 EKVINVLEGQVFEYAE--------VDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 224

Query: 81  INASNEEKNTPLHYACLNGH 100
             A + E    L YA     
Sbjct: 225 DVAKDYE--DGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 10/83 (12%), Positives = 18/83 (21%), Gaps = 22/83 (26%)

Query: 55  GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
           G     + S     G                            +GH+          A++
Sbjct: 1   GEVNKIIGSRTAGEGA-------------------MEYLIEWKDGHSPSWVPSSYIAADV 41

Query: 115 SVLNSHEQTPIDEALSRGKMDII 137
               S  +TP   A  +     +
Sbjct: 42  ---VSEYETPWWTAARKADEQAL 61

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  103 bits (260), Expect = 2e-27
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 12/136 (8%)

Query: 25  ALLAAARY---DDIEDVISLASAG--------VPLDSKDSQGRTALHMASANGHLGIVEY 73
           AL+  A     D +     L   G           DS+  +GRTALH A+   ++ IV+Y
Sbjct: 238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY 297

Query: 74  LIG-RGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRG 132
           L+G +G + +  +E+  TP+  A   G  EV   L+  GA++  +++ + T    A +  
Sbjct: 298 LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN 357

Query: 133 KMDIIDAINTAVAQLE 148
             +I+D  +    + E
Sbjct: 358 HHNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 99.6 bits (249), Expect = 7e-26
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 11/125 (8%)

Query: 25  ALLAAARYDDIE--------DVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIG 76
            L   A     E        +     +AG  +++ D    T L +A       +V YL+ 
Sbjct: 128 VLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK 187

Query: 77  RGVDINASNEEKNTPLHYACLNGHTEVAKKLV---LSGANISVLNSHEQTPIDEALSRGK 133
            G D    N+ + + LH A  N    +   ++       +I  L+ +  T +        
Sbjct: 188 AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEG 247

Query: 134 MDIID 138
            D + 
Sbjct: 248 RDQVA 252

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 94.2 bits (235), Expect = 7e-24
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 9/119 (7%)

Query: 27  LAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLI--------GRG 78
           L             +    V +       RT LH  ++N      E LI          G
Sbjct: 98  LHTEAAGSYAITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 156

Query: 79  VDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            D+NA + ++NTPL  A L     +   L+ +GA+ ++ N  E++ + +A +     ++
Sbjct: 157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMM 215

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 82.7 bits (205), Expect = 1e-19
 Identities = 17/134 (12%), Positives = 34/134 (25%), Gaps = 14/134 (10%)

Query: 7   PSINRTQ---TTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMAS 63
           P +   +       S   +  +LL A+    I+            +              
Sbjct: 19  PPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGY 69

Query: 64  ANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQT 123
            NG+  + ++             E    LH     G   + + +     NI     H +T
Sbjct: 70  GNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIID-PRHNRT 127

Query: 124 PIDEALSRGKMDII 137
            +    S    +  
Sbjct: 128 VLHWIASNSSAEKS 141

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 98.0 bits (245), Expect = 3e-26
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 1/115 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQ-GRTALHMASANGHLGIVEYLIGRGVDINA 83
            L  A+ +  +  V  L S G  +++++   GRTALH+A    +  +V  L+  G D+N 
Sbjct: 120 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIID 138
              +  +P         T + ++L         +    +            +  +
Sbjct: 180 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 97.6 bits (244), Expect = 4e-26
 Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 25  ALLAAARYDDIEDVISLASAG------VPLDSKDSQGRTALHMASANGHLGIVEYLIGRG 78
            L  A     +  V  L  +         L + +  G T LH+AS +G+LGIVE L+  G
Sbjct: 81  PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG 140

Query: 79  VDINA-SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            D+NA       T LH A    + ++   L+  GA+++ +     +P      R    I 
Sbjct: 141 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQ 200

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 97.2 bits (243), Expect = 6e-26
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 10/123 (8%)

Query: 25  ALLAAARYDDIEDVISLA----SAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
            L  A  +++    + +          L+ +++  +T LH+A       I E L+G G D
Sbjct: 11  FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 70

Query: 81  INASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVL------NSHEQTPIDEALSRGKM 134
               +   NTPLH AC  G       L  S     +       N +  T +  A   G +
Sbjct: 71  PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 130

Query: 135 DII 137
            I+
Sbjct: 131 GIV 133

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 90.3 bits (225), Expect = 3e-23
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 51  KDSQGRTALHMASANGH----LGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKK 106
               G + LH+A  +      + ++  + G    +N  N  + TPLH A +    E+A+ 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 107 LVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           L+ +G +  + +    TP+  A  +G +  +
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLASV 94

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 76.0 bits (188), Expect = 6e-18
 Identities = 14/82 (17%), Positives = 25/82 (30%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL  A    + + V  L   G  ++    QG +   +        I + L    ++    
Sbjct: 154 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQM 213

Query: 85  NEEKNTPLHYACLNGHTEVAKK 106
             E      Y   +  TE  + 
Sbjct: 214 LPESEDEESYDTESEFTEFTED 235

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 43.3 bits (103), Expect = 6e-06
 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 83  ASNEEKNTPLHYACLNGHT----EVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
              E+ ++ LH A ++       EV +++    A ++  N+ +QTP+  A+   + +I 
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 99.6 bits (249), Expect = 7e-26
 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 44  AGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEV 103
             +     D +    +H+A+  G    V  LI  GV     N    T LH AC  G  + 
Sbjct: 9   PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDT 68

Query: 104 AKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           AK L   G   S+ +   Q PI  A+   K D++
Sbjct: 69  AKYLASVGEVHSLWH--GQKPIHLAVMANKTDLV 100

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 98.8 bits (247), Expect = 1e-25
 Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 18/131 (13%)

Query: 25  ALLAAARYDDIEDV-----ISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGV 79
            L+ A  + + E +        + + + LD  + QG + LH A       +    +  G+
Sbjct: 176 PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI 235

Query: 80  DINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSH-------------EQTPID 126
           D+N  + E   PL+ +       + K+L+       +                     + 
Sbjct: 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVP 295

Query: 127 EALSRGKMDII 137
            A    K +++
Sbjct: 296 AAADPSKQEVL 306

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 98.4 bits (246), Expect = 2e-25
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            +  AAR    ++V  L   GV    ++  G TALH+A   G +   +YL   G   +  
Sbjct: 23  KIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW 82

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDA 139
           +     P+H A +   T++   LV             Q P        + ++ + 
Sbjct: 83  H--GQKPIHLAVMANKTDLVVALVEGAKER------GQMPESLLNECDEREVNEI 129

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 98.4 bits (246), Expect = 2e-25
 Identities = 10/126 (7%), Positives = 35/126 (27%), Gaps = 13/126 (10%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  A   +  +  +     G+ ++ +D++    L+++     + + + L+ +       
Sbjct: 214 HLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQ 273

Query: 85  NEEKN-------------TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSR 131
               +               +  A      EV + L      +    +       +   +
Sbjct: 274 ACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKK 333

Query: 132 GKMDII 137
               + 
Sbjct: 334 AAPAVK 339

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 92.2 bits (230), Expect = 3e-23
 Identities = 8/117 (6%), Positives = 23/117 (19%), Gaps = 13/117 (11%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLD-------------SKDSQGRTALHMASANGHLGIV 71
            L  + R   +     L                              +  A+      ++
Sbjct: 247 PLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL 306

Query: 72  EYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
           + L  +  ++  S                  V +  +   A +   +         +
Sbjct: 307 QLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 92.2 bits (230), Expect = 4e-23
 Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 13/120 (10%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANG--HLGIVEYLIGRGVDIN 82
                   D+ E         +    K  +G+TALH     G  +L +++ L+  G    
Sbjct: 114 PESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT 167

Query: 83  ASNEEKNTPLHYACLNGHTEVAKKLV-----LSGANISVLNSHEQTPIDEALSRGKMDII 137
           A ++   TPL  A    + E    ++      S   +   N    + +  A+     D+ 
Sbjct: 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA 227

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 93.4 bits (233), Expect = 2e-24
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 18/130 (13%)

Query: 25  ALLAAARYDDIEDVISLASAG-----VPLDSKDSQGRTALHMASANGHLGIVEYLIGRGV 79
           AL  AA YD++E  + L  A       P+ S+  +G+TALH+A  N ++ +V  L+ RG 
Sbjct: 40  ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA 99

Query: 80  DINASNEEK-------------NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPID 126
            ++A                    PL +A   G  E+ + L+  GA+I   +S   T + 
Sbjct: 100 SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159

Query: 127 EALSRGKMDI 136
             + +     
Sbjct: 160 ILILQPNKTF 169

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 93.1 bits (232), Expect = 2e-24
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 25  ALLAAARYDDIEDVIS-LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDI-- 81
            LL AA+ +D++ +   L   G  +  + + G TALH+A+   +L     L+    ++  
Sbjct: 6   PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65

Query: 82  ---NASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
               +   E  T LH A +N +  + + L+  GA++
Sbjct: 66  EPMTSELYEGQTALHIAVINQNVNLVRALLARGASV 101

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 87.3 bits (217), Expect = 4e-22
 Identities = 31/136 (22%), Positives = 45/136 (33%), Gaps = 23/136 (16%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKD-------------SQGRTALHMASANGHLGIV 71
           AL  A    ++  V +L + G  + ++                G   L  A+  G   IV
Sbjct: 78  ALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIV 137

Query: 72  EYLIGRGVDINASNEEKNTPLHYACLNGHTEVA----KKLVLSGANI------SVLNSHE 121
             LI  G DI A +   NT LH   L  +   A      L+             V N+  
Sbjct: 138 RLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQG 197

Query: 122 QTPIDEALSRGKMDII 137
            TP   A   G + + 
Sbjct: 198 LTPFKLAGVEGNIVMF 213

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 80.0 bits (198), Expect = 2e-19
 Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 6/89 (6%)

Query: 55  GRTALHMASANGHLGIV-EYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGAN 113
             + L +A+    +  + + L   G +++       T LH A L  + E A  L+ +   
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 114 ISVLNSHE-----QTPIDEALSRGKMDII 137
           +            QT +  A+    ++++
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLV 91

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 91.7 bits (228), Expect = 3e-24
 Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 9/125 (7%)

Query: 25  ALLAAARYDDIEDVISLASAGVPL---DSKDSQGRTALHMASANGHLGIVEYLIGRGVDI 81
            + AAA     ED + L   G        K +     L   +      I  +LI +G DI
Sbjct: 9   TVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI 68

Query: 82  NASNEEKNTPLHYACLNGH------TEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMD 135
            +  +E  T        G       TE+ K  +  GA+I+ L    +  + + +    +D
Sbjct: 69  KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVD 128

Query: 136 IIDAI 140
             + I
Sbjct: 129 ENEMI 133

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 89.3 bits (222), Expect = 3e-23
 Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 13/127 (10%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGI------VEYLIGRG 78
            L         +  + L + G  + S+  +G T        G   I       +  + +G
Sbjct: 45  VLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG 104

Query: 79  VDINASNEEKNTPLHYACLNGHTEVAKKLVL-------SGANISVLNSHEQTPIDEALSR 131
            DI A  +     +     N   +  + + L       SG  + + +    T ++     
Sbjct: 105 ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC 164

Query: 132 GKMDIID 138
            K   + 
Sbjct: 165 QKPIALK 171

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 79.7 bits (197), Expect = 1e-19
 Identities = 8/103 (7%), Positives = 20/103 (19%), Gaps = 13/103 (12%)

Query: 25  ALLAAARY------DDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVE------ 72
                 +          E        G  + +     +  +     N  +   E      
Sbjct: 78  LFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYK 137

Query: 73  -YLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
                 G+ +   ++   T L +          K +       
Sbjct: 138 LIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 66.2 bits (162), Expect = 1e-14
 Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 3/97 (3%)

Query: 50  SKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKN---TPLHYACLNGHTEVAKK 106
           S        +  A+  G       L  +G +   S  + N     L         +++  
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60

Query: 107 LVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTA 143
           L+  GA+I        T        G  DI       
Sbjct: 61  LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELC 97

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 57.4 bits (139), Expect = 3e-11
 Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 7/69 (10%)

Query: 25  ALLAAARYDDIEDV-------ISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGR 77
            +        +++        +  + +G+ L  KD  G TAL           ++ +   
Sbjct: 117 VVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

Query: 78  GVDINASNE 86
               N    
Sbjct: 177 IKKYNLKEN 185

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 90.4 bits (224), Expect = 2e-22
 Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 5/116 (4%)

Query: 27  LAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNE 86
                   ++ +  L ++   +    ++   A  +A+ NGHL ++  L         +  
Sbjct: 100 AITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI 159

Query: 87  EKN--TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQ---TPIDEALSRGKMDII 137
           +         A  NGH  V  +L       +      +        A+ RG  ++I
Sbjct: 160 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI 215

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 76.5 bits (188), Expect = 2e-17
 Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 5/101 (4%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKD--SQGRTALHMASANGHLGIVEYLIGRGVDIN 82
           A   AA    +  +  L             ++   A  +A+ NGHL ++  L        
Sbjct: 131 AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 190

Query: 83  ASN--EEKNTPLHYACL-NGHTEVAKKLVLSGANISVLNSH 120
            +    E      +A +  GH  V   L+     ++    H
Sbjct: 191 TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH 231

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 74.2 bits (182), Expect = 1e-16
 Identities = 18/122 (14%), Positives = 32/122 (26%), Gaps = 8/122 (6%)

Query: 21  ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLG---IVEYLIGR 77
           E +  LL         +   L S       K  +      +A+  G       +  L+  
Sbjct: 61  EQVRQLLCLYYAHYNRNAKQLWSDA---HKKGIKSEVICFVAAITGCSSALDTLCLLLTS 117

Query: 78  GVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQ--TPIDEALSRGKMD 135
              +     E       A  NGH  V  +L        +     +       A   G + 
Sbjct: 118 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH 177

Query: 136 II 137
           ++
Sbjct: 178 VL 179

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 67.3 bits (164), Expect = 4e-14
 Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 16/127 (12%)

Query: 21  ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYL------ 74
             +  +  A +  + + V  L +      S+  QG   L          +++ +      
Sbjct: 249 NRLKEMHDAFKLSNPDGVFDLVTK-----SECLQGFYMLRNLIRRNDEVLLDDIRFLLSI 303

Query: 75  --IGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRG 132
             I           + N  L  A   G+      L+   +   VL   +        + G
Sbjct: 304 PGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS---VLALTKANNYYINETGG 360

Query: 133 KMDIIDA 139
           ++D+   
Sbjct: 361 RLDLRAV 367

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.5 bits (149), Expect = 4e-12
 Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 3/70 (4%)

Query: 39  ISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN 98
           I    A  P  +        L +A   G+ G    L+     +  +   K    +     
Sbjct: 303 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALT---KANNYYINETG 359

Query: 99  GHTEVAKKLV 108
           G  ++    +
Sbjct: 360 GRLDLRAVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 60.3 bits (146), Expect = 1e-11
 Identities = 17/132 (12%), Positives = 37/132 (28%), Gaps = 14/132 (10%)

Query: 21  ENIDALLAAARYDDIEDVISLASAGVPLDSKD--SQGRTALHMASA-NGHLGIVEYLIGR 77
           EN  A   AA    +  +  L        +    ++   A   A+   GH  ++ +L+  
Sbjct: 162 ENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC 221

Query: 78  GVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
            V +  +         +    G   V   +      +  ++         +   G  D++
Sbjct: 222 PVMLAYAE-------IHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLV 270

Query: 138 DAINTAVAQLEL 149
                      L
Sbjct: 271 TKSECLQGFYML 282

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 85.4 bits (211), Expect = 4e-21
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)

Query: 43  SAGVPLDSKDSQGRTALHMASANG---HLGIVEYLIGRGVDINASNEEKNTPLHYACLNG 99
           +  +PL +      TALH+A  +     L IV++L+    +++    + +T LHY CL  
Sbjct: 157 TEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTD 216

Query: 100 HTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIID 138
           + E  K L+   A+I + N   +TP+D A         +
Sbjct: 217 NAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEE 255

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 73.9 bits (181), Expect = 8e-17
 Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 25  ALLAAARYDD---IEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDI 81
           AL  A R  D   +  V  L      LD +  +G TALH      +   ++ L+     I
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231

Query: 82  NASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPID 126
             +NE   TPL  A    H    + L  + +     NSH     +
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQALSG--RFNSHVHVEYE 274

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 82.9 bits (205), Expect = 3e-20
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 21/133 (15%)

Query: 21  ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
           + I  LL  AR  D                   +G+TALH+A    ++ +V  L+  G D
Sbjct: 71  DTIALLLDVARKTDSLKQF----VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD 126

Query: 81  INASNEEK--------------NTPLHYACLNGHTEVAKKLVLSG---ANISVLNSHEQT 123
           + A+                    PL  A       + K L+ +    A+IS  +S   T
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186

Query: 124 PIDEALSRGKMDI 136
            +   +      +
Sbjct: 187 VLHALVEVADNTV 199

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 72.5 bits (178), Expect = 3e-16
 Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 36/152 (23%)

Query: 22  NIDALLAAARYDDIEDVISL-------ASAGVPLDSKD-SQGRTALHMASAN---GHLGI 70
           +  ++  A    + +++ SL              + KD   G+T L  A  N   G    
Sbjct: 13  DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72

Query: 71  VEYLIGRGVDINASNEEKN-----------TPLHYACLNGHTEVAKKLVLSGANI----- 114
           +  L+      ++  +  N           T LH A    +  +   LV +GA++     
Sbjct: 73  IALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAAN 132

Query: 115 ---------SVLNSHEQTPIDEALSRGKMDII 137
                           + P+  A    ++ I+
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 67.5 bits (165), Expect = 2e-14
 Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 19/108 (17%)

Query: 25  ALLAAARYDDIEDVISLASAGVP---LDSKDSQGRTALHMASANGHLGIVE--------- 72
            L  AA  + +  V  L         + ++DS G T LH         +           
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYN 210

Query: 73  -------YLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGAN 113
                   L         +N +  TPL  A  +G   V   ++    +
Sbjct: 211 EILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 66.7 bits (163), Expect = 3e-14
 Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
             + +   + +     L       +  + +G T L +A+++G +G++ Y++ R +     
Sbjct: 203 KFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH---- 258

Query: 85  NEEKNTPLHYACLNGH 100
              +    H A  + H
Sbjct: 259 ---EPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 58.6 bits (142), Expect = 3e-11
 Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 11/101 (10%)

Query: 43  SAGVPLDSKDSQGRTALHMASANG-------HLGIVEYLIGRGVDINAS-NEEKNTPLHY 94
           S            R ++  A A          L  ++    R  D      E   T L  
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 95  ACLN---GHTEVAKKLVLSGANISVLNSHEQTPIDEALSRG 132
           A LN   G  +    L+        L         ++  +G
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKG 101

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 83.1 bits (205), Expect = 4e-20
 Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 9/129 (6%)

Query: 19  SPENIDALLAAARYDDIEDVISLASAGV------PLDSKDSQGRTALHMASANGH---LG 69
                  L  A    D+  V+   + G       P     +     LH+A    +   L 
Sbjct: 148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP 207

Query: 70  IVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEAL 129
           +V+++I  G  ++A   + NT LHYA L    +  K L+   A +  +N   +T +D A 
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 267

Query: 130 SRGKMDIID 138
            +   +  +
Sbjct: 268 KKHHKECEE 276

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 68.9 bits (168), Expect = 7e-15
 Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 5/125 (4%)

Query: 9   INRTQTTETSSPENIDALLAAARYDDIEDVIS---LASAGVPLDSKDSQGRTALHMASAN 65
             +      +       L  A +  +   +     +   G  LD+K + G TALH A+  
Sbjct: 177 FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALY 236

Query: 66  GHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPI 125
                ++ L+     +   NE   T L  A    H E  + L  + A             
Sbjct: 237 NQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--TFAFPLHVDY 294

Query: 126 DEALS 130
              +S
Sbjct: 295 SWVIS 299

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 82.6 bits (204), Expect = 2e-19
 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 19  SPENIDALLAAARYDDIEDVISLASAG------VPLDSKDSQGRTALHMASAN---GHLG 69
                  L  A    D+  V+   + G      +P     +     LH+A        L 
Sbjct: 129 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP 188

Query: 70  IVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEAL 129
           +V+++I  G  ++A   + NT LHYA L    +  K L+   A +  +N   +T +D A 
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248

Query: 130 SRGKMDIIDAINTA 143
            +   +  + +  A
Sbjct: 249 KKHHKECEELLEQA 262

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 80.2 bits (198), Expect = 3e-19
 Identities = 23/115 (20%), Positives = 37/115 (32%), Gaps = 19/115 (16%)

Query: 25  ALLAAARYDDIEDV---ISLASAGVPLDSKDSQGRTALHM----------------ASAN 65
            L  AA     + V   +        L++ DS G T LH                    +
Sbjct: 139 PLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYD 198

Query: 66  GHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSH 120
           G L +   L         SN +  TPL  A   G  E+ + ++    + +  + H
Sbjct: 199 GLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHH 253

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 79.4 bits (196), Expect = 7e-19
 Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 32/146 (21%)

Query: 24  DALLAAARYDDIEDVISLASAGVPLDSKDS-------------QGRTALHMASANGHLGI 70
            AL  A     ++ V  L   G  +  +                G   L +A+      +
Sbjct: 92  SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151

Query: 71  VEYLIGRGVD-------------------INASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
           V YL+                        + A N  +N+ L     +G  ++  +L  + 
Sbjct: 152 VTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV 211

Query: 112 ANISVLNSHEQTPIDEALSRGKMDII 137
               + N    TP+  A   GK++I 
Sbjct: 212 QLEEISNHQGLTPLKLAAKEGKIEIF 237

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 77.9 bits (192), Expect = 2e-18
 Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 20/131 (15%)

Query: 21  ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
             I  LL   +       +           +  QG +ALH+A     L  V+ L+  G D
Sbjct: 60  ACIMPLLQIDKDSGNPKPLV----NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD 115

Query: 81  INASNEEKN-------------TPLHYACLNGHTEVAKKLV---LSGANISVLNSHEQTP 124
           ++     +               PL  A      +V   L+      A++   +S   T 
Sbjct: 116 VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTV 175

Query: 125 IDEALSRGKMD 135
           +   +      
Sbjct: 176 LHALVMIADNS 186

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 75.6 bits (186), Expect = 2e-17
 Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 22/129 (17%)

Query: 22  NIDALLAAARYDDIEDVISL--------ASAGVPLDSKDSQGRTALHMASAN---GHLGI 70
           + D L +       E++  L                ++ S G+T L  A  N   G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 71  VEYLIGRGVD-------INASNEEKN----TPLHYACLNGHTEVAKKLVLSGANISVLNS 119
           +  L+    D       +NA   ++     + LH A      +  K LV +GA++ +   
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 120 HEQTPIDEA 128
                  + 
Sbjct: 122 GRFFQKHQG 130

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 60.6 bits (147), Expect = 6e-12
 Identities = 12/65 (18%), Positives = 26/65 (40%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL+       ++    L       +  + QG T L +A+  G + I  +++ R     A+
Sbjct: 191 ALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAA 250

Query: 85  NEEKN 89
           +   +
Sbjct: 251 HHHHH 255

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 81.0 bits (199), Expect = 5e-19
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 2/156 (1%)

Query: 2   EQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDS--QGRTAL 59
                           S         A+     +  +    + G  ++  +      T L
Sbjct: 180 PGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPL 239

Query: 60  HMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNS 119
             A+A   L   E+L+  G ++N ++     PLH+A + GHT +A   +  GA++   +S
Sbjct: 240 IQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS 299

Query: 120 HEQTPIDEALSRGKMDIIDAINTAVAQLELGGFTVS 155
             + P+  A+     DI+  +  A  +        +
Sbjct: 300 EGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQA 335

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 76.0 bits (187), Expect = 1e-17
 Identities = 25/130 (19%), Positives = 43/130 (33%), Gaps = 21/130 (16%)

Query: 21  ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
           + I  LL  A           +    P      +G+TALH+A        VE L+ +G D
Sbjct: 63  DTIPILLDIAEKTGNMREFINS----PFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD 118

Query: 81  INASNEEKN--------------TPLHYACLNGHTEVAKKLVLSG---ANISVLNSHEQT 123
           ++A    +                PL  A       +   L  +G   A++   +S   T
Sbjct: 119 VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNT 178

Query: 124 PIDEALSRGK 133
            +   ++   
Sbjct: 179 VLHALVAIAD 188

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 68.7 bits (168), Expect = 6e-15
 Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 19/117 (16%)

Query: 25  ALLAAARYDDIEDVISLASAGVP---LDSKDSQGRTALHMASANGH---------LGIVE 72
            L  AA  +    V  L   G     L  +DS+G T LH   A              + +
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD 202

Query: 73  YLIGRGVDINAS-------NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQ 122
            L+ +   +          N +  +PL  A   G   + + ++      +  + H  
Sbjct: 203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 66.7 bits (163), Expect = 3e-14
 Identities = 21/115 (18%), Positives = 33/115 (28%), Gaps = 22/115 (19%)

Query: 22  NIDALLAAARYDDIEDVISLA----SAGVPLDSKDSQ----GRTALHMASAN---GHLGI 70
           N   L         + +  L     +    L  ++ +    G+T L  A  N   G    
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 71  VEYLIGRGVDINASNEEKN-----------TPLHYACLNGHTEVAKKLVLSGANI 114
           +  L+          E  N           T LH A         + LV  GA++
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV 119

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 57.1 bits (138), Expect = 1e-10
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 11/90 (12%)

Query: 55  GRTALHMASANG----HLGIVEYLIGRGVDINASNEEKN----TPLHYACLN---GHTEV 103
            R  L    + G      G++ +L+     +      +     T L  A LN   G  + 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 104 AKKLVLSGANISVLNSHEQTPIDEALSRGK 133
              L+        +     +P  +   RG+
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQ 94

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 49.8 bits (119), Expect = 4e-08
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 51  KDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY 94
            ++ G + L MA+  G +GI +++I R +         +   H+
Sbjct: 221 LNNDGLSPLMMAAKTGKIGIFQHIIRREIADA----AAHHHHHH 260

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 76.2 bits (187), Expect = 2e-17
 Identities = 18/129 (13%), Positives = 44/129 (34%), Gaps = 5/129 (3%)

Query: 2   EQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSK-DSQGRTALH 60
           E     + + +         N      +      E   +  +  + L+   D  G T LH
Sbjct: 77  EMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLH 136

Query: 61  MASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKK----LVLSGANISV 116
             ++  +L +V++L+  G +    +    + L  A  + +   +      L      + +
Sbjct: 137 WLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 196

Query: 117 LNSHEQTPI 125
            +S  +T +
Sbjct: 197 EDSMNRTIL 205

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 70.1 bits (171), Expect = 4e-15
 Identities = 16/74 (21%), Positives = 35/74 (47%)

Query: 22  NIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDI 81
             +      +   +E++         L+++DS G T L++A+  G++ IV+ L+  G D 
Sbjct: 250 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 309

Query: 82  NASNEEKNTPLHYA 95
             +N+    P+ + 
Sbjct: 310 FIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 68.9 bits (168), Expect = 9e-15
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 3/124 (2%)

Query: 8   SINRTQTTETSSPENIDALLAAARYDDIEDVI-SLASAGVPLDSKDSQGRTALHMASANG 66
           ++      +      ++A L    + +I+++  SL +     +S+           S + 
Sbjct: 48  ALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDS 107

Query: 67  HLG-IVEYLIGRGVDINA-SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTP 124
            L  + +      +++N   +E  NTPLH+     + E+ K LV  G+N    ++  ++ 
Sbjct: 108 LLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESC 167

Query: 125 IDEA 128
           + +A
Sbjct: 168 LVKA 171

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 64.7 bits (157), Expect = 3e-13
 Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 22  NIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGH----LGIVEYLIGR 77
            +    AAA+Y     +  +           +  + +             L  ++     
Sbjct: 213 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 272

Query: 78  GVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
              +NA +   +T L+ A   G+  +   L+  GA+  + N     P+D  
Sbjct: 273 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 56.2 bits (135), Expect = 3e-10
 Identities = 17/132 (12%), Positives = 34/132 (25%), Gaps = 16/132 (12%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLG----IVEYLIGRGVD 80
            L       ++E V  L   G      D+ G + L  A  + +          L      
Sbjct: 134 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 193

Query: 81  INASNEEKNTPLHYACLNGHTE------------VAKKLVLSGANISVLNSHEQTPIDEA 128
           +   +    T LH+  +                 +   +V          ++E+      
Sbjct: 194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 253

Query: 129 LSRGKMDIIDAI 140
            +  + D I   
Sbjct: 254 KNGERKDSILEN 265

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 20/134 (14%)

Query: 25  ALLAAARYDDIEDVIS----LASAGVPLDSKDSQGRTALHMA-----------SANGHL- 68
            L+ A +  +  D  +    L      L  +DS  RT LH             +A  +L 
Sbjct: 167 CLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD 226

Query: 69  GIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVL----NSHEQTP 124
            ++ +++ +      S   +             +   + +     I+ +    +S+  T 
Sbjct: 227 ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC 286

Query: 125 IDEALSRGKMDIID 138
           ++ A   G + I+D
Sbjct: 287 LNIAARLGNISIVD 300

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.98
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.98
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.98
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.98
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.98
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.98
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.97
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.97
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.96
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.96
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.95
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.92
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.9
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.9
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=8.9e-38  Score=196.49  Aligned_cols=140  Identities=36%  Similarity=0.523  Sum_probs=128.7

Q ss_pred             ccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCC
Q 031662           10 NRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKN   89 (155)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~   89 (155)
                      +.+.+++..+..|.|||++|+..++.++++++++.|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|+
T Consensus        25 ~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~  104 (169)
T 4gpm_A           25 ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR  104 (169)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             HCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCC
Confidence            44555666788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhccc
Q 031662           90 TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLEL  149 (155)
Q Consensus        90 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~  149 (155)
                      ||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..|+.+++++|+++|++++-
T Consensus       105 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          105 TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            999999999999999999999999999999999999999999999999999999999874

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=100.00  E-value=5.8e-35  Score=177.71  Aligned_cols=133  Identities=23%  Similarity=0.314  Sum_probs=128.0

Q ss_pred             CCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCC-CCCH
Q 031662           13 QTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEE-KNTP   91 (155)
Q Consensus        13 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~t~   91 (155)
                      .+.+..+..+.||||.|++.|+.+++++|++.+.+++.++..|.||||+|+. ++.+++++|+++|++++.++.. |.||
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP   81 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence            4556678889999999999999999999999999999999999999999999 9999999999999999999999 9999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhh
Q 031662           92 LHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQ  146 (155)
Q Consensus        92 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~  146 (155)
                      ||+|+..++.+++++|+++|++++.++..|+|||++|+..++.+++++|+++|+|
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999985

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.2e-34  Score=180.25  Aligned_cols=129  Identities=34%  Similarity=0.561  Sum_probs=125.3

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHH
Q 031662           24 DALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEV  103 (155)
Q Consensus        24 ~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  103 (155)
                      ++|+.|++.|++++|++|++.|++++.++..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662          104 AKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       104 ~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~  134 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS  134 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence            9999999999999999999999999999999999999999999987654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=100.00  E-value=2.9e-33  Score=170.15  Aligned_cols=129  Identities=33%  Similarity=0.485  Sum_probs=121.7

Q ss_pred             cCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q 031662           16 ETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYA   95 (155)
Q Consensus        16 ~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a   95 (155)
                      ......+.||||+|++.|+.+++++|++.+.+++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|
T Consensus         8 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A   87 (136)
T 2jab_A            8 HHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLA   87 (136)
T ss_dssp             ----CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CcccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHH
Q 031662           96 CLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAV  144 (155)
Q Consensus        96 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g  144 (155)
                      +..++.+++++|+++|++++.+|..|+|||++|+..|+.+++++|+++|
T Consensus        88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999876

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=7e-34  Score=190.81  Aligned_cols=144  Identities=23%  Similarity=0.326  Sum_probs=135.8

Q ss_pred             cccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC
Q 031662            9 INRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK   88 (155)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~   88 (155)
                      +..+.+++..+..|.||||+|+..|+.+++++|++.+++++..+..|.||+++|+..++.+++++|++.|++++.+|..|
T Consensus        73 l~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g  152 (269)
T 4b93_B           73 PASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSG  152 (269)
T ss_dssp             --CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTC
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCC
Confidence            34556667778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        89 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      .||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus       153 ~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~  216 (269)
T 4b93_B          153 NTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNK  216 (269)
T ss_dssp             CCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            9999999999999999999999999999999999999999999999999999999999987654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=3.8e-33  Score=175.74  Aligned_cols=139  Identities=26%  Similarity=0.356  Sum_probs=131.5

Q ss_pred             ccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q 031662           15 TETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY   94 (155)
Q Consensus        15 ~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~   94 (155)
                      ....+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  108 (172)
T 3v30_A           29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLY  108 (172)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHH
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCCc
Q 031662           95 ACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGFT  153 (155)
Q Consensus        95 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~  153 (155)
                      |+..++.+++++|+++|++++.++..|+||+++|+..|+.+++++|+++|+++...++.
T Consensus       109 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~  167 (172)
T 3v30_A          109 AVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLV  167 (172)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC---
T ss_pred             HHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCC
Confidence            99999999999999999999999999999999999999999999999999998876653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=100.00  E-value=9e-34  Score=176.15  Aligned_cols=136  Identities=24%  Similarity=0.317  Sum_probs=121.0

Q ss_pred             cCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCC-HHHH
Q 031662           16 ETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNT-PLHY   94 (155)
Q Consensus        16 ~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t-~l~~   94 (155)
                      ...+..+.||||+|++.|+.+++++|++.|.+++..+..|.||||+|+ .++.+++++|+++|++++.++..|.| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            345677889999999999999999999999999999999999999985 89999999999999999999999999 9999


Q ss_pred             HHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           95 ACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        95 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      |+..|+.+++++|+++|++++.++..|+|||++|+..|+.+++++|+++|++++..+.
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~  142 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH  142 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCc
Confidence            9999999999999999999999999999999999999999999999999999987653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=4.1e-33  Score=173.88  Aligned_cols=135  Identities=25%  Similarity=0.280  Sum_probs=114.2

Q ss_pred             cCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCC
Q 031662           11 RTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNT   90 (155)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t   90 (155)
                      .+.+....+..|.||||+|+. |+.+++++|++.|.+++.++..|.||||+|+..++.+++++|+++|++++.++..|.|
T Consensus        27 ~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  105 (162)
T 1ihb_A           27 NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL  105 (162)
T ss_dssp             SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence            344455566778888888888 8889999888888888888888888999988888888888888888888888888889


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhh
Q 031662           91 PLHYACLNGHTEVAKKLVLSGAN-ISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQ  146 (155)
Q Consensus        91 ~l~~a~~~~~~~~~~~Ll~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~  146 (155)
                      |||+|+..++.+++++|+++|++ ++.++..|+|||++|+..|+.+++++|+++|+|
T Consensus       106 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99998888888899988888887 588888888999999888889999998888875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=100.00  E-value=1e-32  Score=165.20  Aligned_cols=126  Identities=37%  Similarity=0.579  Sum_probs=122.4

Q ss_pred             ccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCc
Q 031662           21 ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH  100 (155)
Q Consensus        21 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~  100 (155)
                      +|.||||.|++.|+.+++++|++.+.+++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhh
Q 031662          101 TEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQ  146 (155)
Q Consensus       101 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~  146 (155)
                      .+++++|+++|++++.++..|.||+++|+..++.+++++|+++|++
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999985

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=1.6e-32  Score=172.55  Aligned_cols=135  Identities=32%  Similarity=0.482  Sum_probs=113.3

Q ss_pred             CCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Q 031662           17 TSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYAC   96 (155)
Q Consensus        17 ~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~   96 (155)
                      .....+.++|+.|++.|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            34566778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           97 LNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        97 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      ..++.+++++|+++|++++.++..|.|||++|+..|+.+++++|+++|++++..+
T Consensus        89 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  143 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD  143 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            8888888888888888888888888888888888888888888888888876654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.2e-33  Score=182.27  Aligned_cols=145  Identities=25%  Similarity=0.306  Sum_probs=131.8

Q ss_pred             CCCCCcccccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCC
Q 031662            2 EQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDI   81 (155)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~   81 (155)
                      ++|++|+...     ..+..+.|+||.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|+++
T Consensus         6 ~~~~~~~~~~-----~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            6 RKAGSPRKAR-----RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ----CCCCCC-----CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ccCCCCcccc-----ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            4556555543     34568899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccC-CCCCCHHHHH--HHCCCHHHHHHHHHHHhhcccCC
Q 031662           82 NASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLN-SHEQTPIDEA--LSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        82 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      +.+|..|.||||+|+..|+.+++++|++.|++++..+ ..|+|||++|  +..|+.+++++|+++|++++..+
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~  153 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN  153 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSG
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccccc
Confidence            9999999999999999999999999999999999986 6999999999  99999999999999999997764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=2.2e-32  Score=171.48  Aligned_cols=137  Identities=26%  Similarity=0.319  Sum_probs=122.3

Q ss_pred             CCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCH
Q 031662           12 TQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTP   91 (155)
Q Consensus        12 ~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~   91 (155)
                      +......+..|.||||+|+..|+.+++++|++.+.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||
T Consensus        26 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  105 (167)
T 3v31_A           26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP  105 (167)
T ss_dssp             SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred             CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCH
Confidence            44556667788899999999999999999999999998888889999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcc
Q 031662           92 LHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLE  148 (155)
Q Consensus        92 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  148 (155)
                      ||+|+..++.+++++|+++|++++.++..|.||+++|+..|+.+++++|++++.++.
T Consensus       106 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          106 LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999987764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=5.2e-32  Score=170.19  Aligned_cols=136  Identities=29%  Similarity=0.444  Sum_probs=129.4

Q ss_pred             cccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC
Q 031662            9 INRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK   88 (155)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~   88 (155)
                      ++.+.+.+..+..|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|+++|++++.++..|
T Consensus        34 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  113 (169)
T 2y1l_E           34 MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG  113 (169)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            34566777788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHH
Q 031662           89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAV  144 (155)
Q Consensus        89 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g  144 (155)
                      .||||+|+..++.+++++|+++|++++.++..|.||+++|+..|+.+++++|+++|
T Consensus       114 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999876

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=1.1e-32  Score=176.42  Aligned_cols=136  Identities=26%  Similarity=0.327  Sum_probs=111.2

Q ss_pred             cCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q 031662           16 ETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYA   95 (155)
Q Consensus        16 ~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a   95 (155)
                      +..+..|.||||+|+..|+.+++++|++.+.+++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS  108 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            34567778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           96 CLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        96 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      +..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+
T Consensus       109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  164 (192)
T 2rfm_A          109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD  164 (192)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            88888888888888888888888888888888888888888888888888776554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=2.8e-32  Score=170.98  Aligned_cols=132  Identities=20%  Similarity=0.291  Sum_probs=126.9

Q ss_pred             ccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCc
Q 031662           21 ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH  100 (155)
Q Consensus        21 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~  100 (155)
                      .+.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662          101 TEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       101 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  133 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD  133 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            9999999999999999999999999999999999999999999999876653

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=1.5e-32  Score=174.03  Aligned_cols=140  Identities=29%  Similarity=0.393  Sum_probs=117.6

Q ss_pred             CCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q 031662           13 QTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPL   92 (155)
Q Consensus        13 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l   92 (155)
                      ......+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.|||
T Consensus        30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L  109 (179)
T 3f6q_A           30 NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPL  109 (179)
T ss_dssp             SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH
Confidence            34556677788888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           93 HYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        93 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      |+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|+++|++++...+
T Consensus       110 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~  169 (179)
T 3f6q_A          110 HYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPY  169 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCC
T ss_pred             HHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCc
Confidence            888888888888888888888888888888888888888888888888888888875544

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=6.2e-32  Score=172.95  Aligned_cols=133  Identities=27%  Similarity=0.320  Sum_probs=127.5

Q ss_pred             CCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCH
Q 031662           12 TQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTP   91 (155)
Q Consensus        12 ~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~   91 (155)
                      +......+..|.||||+|+..|+.+++++|++.+++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||
T Consensus        58 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  137 (192)
T 2rfm_A           58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETP  137 (192)
T ss_dssp             HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCH
T ss_pred             ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            44556667789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHH
Q 031662           92 LHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAV  144 (155)
Q Consensus        92 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g  144 (155)
                      ||+|+..++.+++++|+++|++++.++..|.||+++|+..|+.+++++|+++|
T Consensus       138 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          138 LIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999987

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=4.2e-32  Score=169.85  Aligned_cols=133  Identities=33%  Similarity=0.474  Sum_probs=94.2

Q ss_pred             CcccHHHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Q 031662           19 SPENIDALLAAARYDDIEDVISLASA-GVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACL   97 (155)
Q Consensus        19 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~   97 (155)
                      +..+.++|+.|++.|+.+++++|++. +.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            45666777777777777777777763 34555566666777777777777777777777777777777777777777777


Q ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           98 NGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        98 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      .++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++..+
T Consensus        85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  138 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN  138 (165)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence            777777777777777777777777777777777777777777777777666544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.5e-31  Score=175.35  Aligned_cols=140  Identities=19%  Similarity=0.251  Sum_probs=119.0

Q ss_pred             CCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCH
Q 031662           12 TQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTP   91 (155)
Q Consensus        12 ~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~   91 (155)
                      +..+...+..|.||||+|+..|+.+++++|++.+.+++.++..|.||||+|+..++.+++++|++.|++++.++..|.||
T Consensus        63 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  142 (231)
T 3aji_A           63 GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATA  142 (231)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcH
Confidence            44455566778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           92 LHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        92 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      ||+|+..|+.+++++|+++|++++.++..|+|||++|+..++.+++++|+++|++++..+
T Consensus       143 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  202 (231)
T 3aji_A          143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN  202 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Confidence            888888888888888888888888888888899999988888899999988888887654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.98  E-value=3.1e-31  Score=165.94  Aligned_cols=133  Identities=30%  Similarity=0.394  Sum_probs=124.5

Q ss_pred             CCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCH
Q 031662           12 TQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTP   91 (155)
Q Consensus        12 ~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~   91 (155)
                      +......+..+.||||+|+..|+.+++++|++.+.+++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||
T Consensus        32 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  111 (165)
T 3twr_A           32 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTP  111 (165)
T ss_dssp             TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCH
Confidence            34455667788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHh
Q 031662           92 LHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA  145 (155)
Q Consensus        92 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~  145 (155)
                      ||+|+..++.+++++|+++|++++.++..|+||+++|+. ++.+++++|+++|+
T Consensus       112 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          112 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            999999999999999999999999999999999999877 89999999999886

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.98  E-value=2.9e-31  Score=164.21  Aligned_cols=127  Identities=27%  Similarity=0.414  Sum_probs=73.8

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHH
Q 031662           23 IDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTE  102 (155)
Q Consensus        23 ~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  102 (155)
                      .++|+.|++.|+.+++++|++.+.+++ .+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            355555666666666666555555443 3445555666666555555666665555555555555556666665555556


Q ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccC
Q 031662          103 VAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELG  150 (155)
Q Consensus       103 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~  150 (155)
                      ++++|+++|++++.++..|+|||++|+..|+.+++++|+++|++++..
T Consensus        82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  129 (153)
T 1awc_B           82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ  129 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence            666655555555555555556666666555566666666555555443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.98  E-value=1.1e-31  Score=178.60  Aligned_cols=138  Identities=24%  Similarity=0.282  Sum_probs=95.8

Q ss_pred             CccCCCcccHHHHHHHHHhCCHHHHHHHHHcCC-CCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q 031662           14 TTETSSPENIDALLAAARYDDIEDVISLASAGV-PLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPL   92 (155)
Q Consensus        14 ~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l   92 (155)
                      ++...+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..++.+++++|++.|++++.++..|.|||
T Consensus        82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L  161 (253)
T 1yyh_A           82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL  161 (253)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            334445556666666666666666666666654 5566666666666666666666667777777777777777777777


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           93 HYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        93 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      |+|+..|+.+++++|+++|++++.++..|.|||++|+..|+.+++++|+++|++++..+
T Consensus       162 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d  220 (253)
T 1yyh_A          162 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD  220 (253)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccc
Confidence            77777777777777777777777777777777777777777777777777777776554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.98  E-value=3.7e-31  Score=167.67  Aligned_cols=133  Identities=29%  Similarity=0.425  Sum_probs=124.1

Q ss_pred             cccHHHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Q 031662           20 PENIDALLAAARYDDIEDVISLASA-GVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN   98 (155)
Q Consensus        20 ~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~   98 (155)
                      ..+.++|+.|++.|+.+++++|++. +.+++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            4677899999999999999999998 567889999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           99 GHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        99 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      ++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  136 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK  136 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCT
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhcc
Confidence            999999999999999999999999999999999999999999999999987654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.98  E-value=4.2e-31  Score=163.52  Aligned_cols=123  Identities=33%  Similarity=0.475  Sum_probs=119.5

Q ss_pred             CCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Q 031662           18 SSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACL   97 (155)
Q Consensus        18 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~   97 (155)
                      .+..|.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+.
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  109 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE  109 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            36678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHH
Q 031662           98 NGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI  140 (155)
Q Consensus        98 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  140 (155)
                      .++.+++++|+++|++++.++..|.||+++|+..|+.+++++|
T Consensus       110 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          110 HNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999999999999999999999999999999987

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.98  E-value=1.9e-31  Score=179.34  Aligned_cols=102  Identities=25%  Similarity=0.302  Sum_probs=68.2

Q ss_pred             CCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Q 031662           50 SKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNE-EKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA  128 (155)
Q Consensus        50 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  128 (155)
                      ..+..|.||||+|+..++.+++++|+++|++++.++. .|.||||+|+..|+.+++++|+++|++++.++..|+|||++|
T Consensus       153 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A  232 (282)
T 1oy3_D          153 AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA  232 (282)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHH
Confidence            3444555666666666666666666666666666654 366777777777777777777777777777777777777777


Q ss_pred             HHCCCHHHHHHHHHHHhhcccCC
Q 031662          129 LSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus       129 ~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      +..|+.+++++|+++|++++..+
T Consensus       233 ~~~~~~~~v~~Ll~~ga~~~~~~  255 (282)
T 1oy3_D          233 LLRPNPILARLLRAHGAPEPEDG  255 (282)
T ss_dssp             HTSSCHHHHHHHHHTTCCCCCCC
T ss_pred             HHcCCcHHHHHHHHcCCCcCcCC
Confidence            77777777777777777666543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=5.4e-31  Score=171.94  Aligned_cols=92  Identities=27%  Similarity=0.352  Sum_probs=35.3

Q ss_pred             ccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHH
Q 031662           56 RTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMD  135 (155)
Q Consensus        56 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  135 (155)
                      .||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..|+.+
T Consensus        93 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  172 (223)
T 2f8y_A           93 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE  172 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHH
Confidence            33333333333333333333333333333333333333333333333333333333333333333333333333333333


Q ss_pred             HHHHHHHHHhhc
Q 031662          136 IIDAINTAVAQL  147 (155)
Q Consensus       136 ~~~~L~~~g~~~  147 (155)
                      ++++|+++|+++
T Consensus       173 ~v~~Ll~~ga~~  184 (223)
T 2f8y_A          173 TAKVLLDHFANR  184 (223)
T ss_dssp             HHHHHHHTTCCT
T ss_pred             HHHHHHHcCCCC
Confidence            333333333333

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=2.1e-31  Score=177.64  Aligned_cols=136  Identities=21%  Similarity=0.224  Sum_probs=125.8

Q ss_pred             cCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCC--------------CCCccHHHHHHhCCCHHHHHHHHh---cC
Q 031662           16 ETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKD--------------SQGRTALHMASANGHLGIVEYLIG---RG   78 (155)
Q Consensus        16 ~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~ll~---~~   78 (155)
                      ...+..|.||||+|+..|+.+++++|++.|++++..+              ..|.||||+|+..++.+++++|++   .|
T Consensus        87 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g  166 (260)
T 3jxi_A           87 RDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ  166 (260)
T ss_dssp             CCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence            3445689999999999999999999999999999988              579999999999999999999999   99


Q ss_pred             CCCCCCCCCCCCHHHHHHhcCc---------HHHHHHHHHcCCCC-------cccCCCCCCHHHHHHHCCCHHHHHHHHH
Q 031662           79 VDINASNEEKNTPLHYACLNGH---------TEVAKKLVLSGANI-------SVLNSHEQTPIDEALSRGKMDIIDAINT  142 (155)
Q Consensus        79 ~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~~~~~-------~~~~~~~~t~l~~a~~~~~~~~~~~L~~  142 (155)
                      ++++.+|..|.||||+|+..++         .+++++|+++|+++       +.++..|+|||++|+..|+.+++++|++
T Consensus       167 a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  246 (260)
T 3jxi_A          167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR  246 (260)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999998887         79999999999988       6799999999999999999999999999


Q ss_pred             HHhhcccCC
Q 031662          143 AVAQLELGG  151 (155)
Q Consensus       143 ~g~~~~~~~  151 (155)
                      +|.+.....
T Consensus       247 ~g~~~~~~~  255 (260)
T 3jxi_A          247 REIADAAAH  255 (260)
T ss_dssp             HHHHHHC--
T ss_pred             hCCCccccc
Confidence            999876554

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=4e-31  Score=179.31  Aligned_cols=141  Identities=28%  Similarity=0.398  Sum_probs=117.5

Q ss_pred             cCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCC----
Q 031662           11 RTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNE----   86 (155)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~----   86 (155)
                      .+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++..+.    
T Consensus        62 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t  141 (299)
T 1s70_B           62 RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT  141 (299)
T ss_dssp             HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCC
Confidence            3444555667788888888888888888888888888888888888888888888888888888888887765543    


Q ss_pred             --------------------------------------------------------CCCCHHHHHHhcCcHHHHHHHHHc
Q 031662           87 --------------------------------------------------------EKNTPLHYACLNGHTEVAKKLVLS  110 (155)
Q Consensus        87 --------------------------------------------------------~~~t~l~~a~~~~~~~~~~~Ll~~  110 (155)
                                                                              .|.||||+|+..|+.+++++|+++
T Consensus       142 ~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  221 (299)
T 1s70_B          142 PLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA  221 (299)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence                                                                    466778888888888899999988


Q ss_pred             CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662          111 GANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus       111 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      |++++.+|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus       222 g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d  262 (299)
T 1s70_B          222 RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN  262 (299)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcC
Confidence            99998888899999999999999999999999998887654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=7.9e-31  Score=163.49  Aligned_cols=130  Identities=21%  Similarity=0.308  Sum_probs=123.4

Q ss_pred             ccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCc
Q 031662           21 ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH  100 (155)
Q Consensus        21 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~  100 (155)
                      ...+||+.|+..|+.+++++|++.+.+++..+..|.||||+|+. ++.+++++|++.|++++.++..|.||||+|+..++
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            45789999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhh-cccCC
Q 031662          101 TEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQ-LELGG  151 (155)
Q Consensus       101 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~-~~~~~  151 (155)
                      .+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++ ++..+
T Consensus        83 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  134 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN  134 (162)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCC
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcC
Confidence            9999999999999999999999999999999999999999999987 35443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=4.8e-31  Score=166.09  Aligned_cols=131  Identities=21%  Similarity=0.277  Sum_probs=123.8

Q ss_pred             cHHHHHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCc
Q 031662           22 NIDALLAAARYDDIEDVISLASAGVP-LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH  100 (155)
Q Consensus        22 ~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~  100 (155)
                      +.+|||.|+..|+.++++++++.+.. ++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            35789999999999999999999877 78889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662          101 TEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       101 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      .+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  133 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD  133 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence            9999999999999999999999999999999999999999999999887653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=1.4e-30  Score=167.49  Aligned_cols=139  Identities=23%  Similarity=0.277  Sum_probs=129.5

Q ss_pred             CccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHH-hcCCCCCCCCCCCCCHH
Q 031662           14 TTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLI-GRGVDINASNEEKNTPL   92 (155)
Q Consensus        14 ~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll-~~~~~~~~~~~~~~t~l   92 (155)
                      .....+..|.||||+|++.|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+ ..+.+++.++..|.|||
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L  110 (201)
T 3hra_A           31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL  110 (201)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHH
Confidence            55667788999999999999999999999999999999999999999999999999999999 55779999999999999


Q ss_pred             HHHHhcCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHCCC-----HHHHHHHHHHHhhcccCCC
Q 031662           93 HYACLNGHTEVAKKLVLSG-ANISVLNSHEQTPIDEALSRGK-----MDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        93 ~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~L~~~g~~~~~~~~  152 (155)
                      |+|+..++.+++++|+++| ++++.++..|+||||+|+..++     .+++++|+++|++++..+.
T Consensus       111 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~  176 (201)
T 3hra_A          111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDN  176 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCC
Confidence            9999999999999999999 8999999999999999999988     9999999999999987654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=2.8e-31  Score=175.33  Aligned_cols=141  Identities=25%  Similarity=0.323  Sum_probs=124.5

Q ss_pred             cccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC
Q 031662            9 INRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK   88 (155)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~   88 (155)
                      ++.+..+.. +..+.||||.|+..|+.+++++|++.+.+++.++..|.||||+|+..++.+++++|+++|++++.+|..|
T Consensus        25 l~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g  103 (239)
T 1ycs_B           25 IAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG  103 (239)
T ss_dssp             -------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTC
T ss_pred             hccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Confidence            344444433 3678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCC-CHHHHH--HHCCCHHHHHHHHHHHhhcccC
Q 031662           89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQ-TPIDEA--LSRGKMDIIDAINTAVAQLELG  150 (155)
Q Consensus        89 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a--~~~~~~~~~~~L~~~g~~~~~~  150 (155)
                      .||||+|+..|+.+++++|+++|++++.++..+. ||+++|  +..|+.+++++|+++|++++..
T Consensus       104 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~  168 (239)
T 1ycs_B          104 WTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIM  168 (239)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccccc
Confidence            9999999999999999999999999999998887 999999  7889999999999999998764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=9.2e-31  Score=171.28  Aligned_cols=135  Identities=22%  Similarity=0.270  Sum_probs=123.7

Q ss_pred             CCcccHHHHHHHHHhCCHHHHHHHHHcC--CCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q 031662           18 SSPENIDALLAAARYDDIEDVISLASAG--VPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYA   95 (155)
Q Consensus        18 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a   95 (155)
                      .+..|.||||.|+..|+.+++++|++.+  .+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  147 (228)
T 2dzn_A           68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA  147 (228)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            5678889999999999999999999998  88888888999999999999999999999999999999999999999999


Q ss_pred             HhcCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHCCCHHHHHHHH-HHHhhcccCCC
Q 031662           96 CLNGHTEVAKKLVLSG-ANISVLNSHEQTPIDEALSRGKMDIIDAIN-TAVAQLELGGF  152 (155)
Q Consensus        96 ~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~-~~g~~~~~~~~  152 (155)
                      +..|+.+++++|++.| ++++.++..|+|||++|+..|+.+++++|+ ++|++++..+.
T Consensus       148 ~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~  206 (228)
T 2dzn_A          148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN  206 (228)
T ss_dssp             HHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCT
T ss_pred             HHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCC
Confidence            9999999999999999 899999999999999999999999999999 88999886653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=3.7e-31  Score=174.22  Aligned_cols=138  Identities=22%  Similarity=0.245  Sum_probs=101.6

Q ss_pred             CccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCC------CCCCCCC
Q 031662           14 TTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD------INASNEE   87 (155)
Q Consensus        14 ~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~------~~~~~~~   87 (155)
                      ..+..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|++.+.+      ++..+..
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN  116 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTT
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCC
Confidence            3455566677777777777777777777777777777777777777777777777777777777654      3556667


Q ss_pred             CCCHHHHHHhcCcHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           88 KNTPLHYACLNGHTEVAKKLVLSGANISVLNS-HEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        88 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      |.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.+++++|+++|++++..+
T Consensus       117 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~  181 (236)
T 1ikn_D          117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT  181 (236)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc
Confidence            77777777777777777777777777777776 77777777777777777777777777776554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=1e-30  Score=162.13  Aligned_cols=128  Identities=23%  Similarity=0.409  Sum_probs=95.0

Q ss_pred             CccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Q 031662           14 TTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLH   93 (155)
Q Consensus        14 ~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~   93 (155)
                      .....+..|.||||+ +..|+.+++++|++.|.+++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||||
T Consensus        28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  106 (156)
T 1bd8_A           28 HPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH  106 (156)
T ss_dssp             CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             CccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence            344555667777777 7777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHH
Q 031662           94 YACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTA  143 (155)
Q Consensus        94 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~  143 (155)
                      +|+..|+.+++++|++. ++++.++..|.||+++|+..|+.+++++|+++
T Consensus       107 ~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          107 LAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            77777777777777777 77777777777777777777777777777653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=6e-31  Score=175.12  Aligned_cols=132  Identities=22%  Similarity=0.288  Sum_probs=124.8

Q ss_pred             CCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC-------------CccHHHHHHhCCCHHHHHHHHh---cCCCC
Q 031662           18 SSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQ-------------GRTALHMASANGHLGIVEYLIG---RGVDI   81 (155)
Q Consensus        18 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~ll~---~~~~~   81 (155)
                      .+..|.||||+|+..|+.+++++|++.|++++..+..             |.||||+|+..++.+++++|++   .|+++
T Consensus        86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~  165 (256)
T 2etb_A           86 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL  165 (256)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc
Confidence            3467999999999999999999999999999988876             9999999999999999999999   99999


Q ss_pred             CCCCCCCCCHHHHHHh--cCcHH-------HHHHHHHcCCCC-------cccCCCCCCHHHHHHHCCCHHHHHHHHHHHh
Q 031662           82 NASNEEKNTPLHYACL--NGHTE-------VAKKLVLSGANI-------SVLNSHEQTPIDEALSRGKMDIIDAINTAVA  145 (155)
Q Consensus        82 ~~~~~~~~t~l~~a~~--~~~~~-------~~~~Ll~~~~~~-------~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~  145 (155)
                      +.+|..|.||||+|+.  .++.+       ++++|+++|+++       +.+|..|+|||++|+..|+.+++++|+++|.
T Consensus       166 n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  245 (256)
T 2etb_A          166 EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF  245 (256)
T ss_dssp             TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence            9999999999999999  78888       999999999999       8999999999999999999999999999998


Q ss_pred             hccc
Q 031662          146 QLEL  149 (155)
Q Consensus       146 ~~~~  149 (155)
                      +...
T Consensus       246 ~~~~  249 (256)
T 2etb_A          246 SGAA  249 (256)
T ss_dssp             HHHH
T ss_pred             CCCC
Confidence            8653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=2.9e-30  Score=168.49  Aligned_cols=136  Identities=24%  Similarity=0.273  Sum_probs=129.3

Q ss_pred             CccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Q 031662           14 TTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLH   93 (155)
Q Consensus        14 ~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~   93 (155)
                      .....+..+.||||+|+..++.+++++|++.+.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||
T Consensus        84 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  163 (223)
T 2f8y_A           84 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF  163 (223)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHH
Confidence            45566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhccc
Q 031662           94 YACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLEL  149 (155)
Q Consensus        94 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~  149 (155)
                      +|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|+++|+....
T Consensus       164 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~  219 (223)
T 2f8y_A          164 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP  219 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCccc
Confidence            99999999999999999999999999999999999999999999999999987643

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=1.2e-30  Score=171.21  Aligned_cols=132  Identities=26%  Similarity=0.338  Sum_probs=62.8

Q ss_pred             cCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCC-----CCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCC----
Q 031662           16 ETSSPENIDALLAAARYDDIEDVISLASAGVPL-----DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNE----   86 (155)
Q Consensus        16 ~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-----~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~----   86 (155)
                      ...+..|.||||+|+..|+.+++++|++.++++     +..+..|.||||+|+..++.+++++|+++|++++.++.    
T Consensus        31 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  110 (232)
T 2rfa_A           31 HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVF  110 (232)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGG
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcce
Confidence            333444445555555555555555555544433     33334444555555544444555555444444444332    


Q ss_pred             ---------CCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHH----HHHHHHHhhc
Q 031662           87 ---------EKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII----DAINTAVAQL  147 (155)
Q Consensus        87 ---------~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~----~~L~~~g~~~  147 (155)
                               .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++    ++|+++|++.
T Consensus       111 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          111 HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred             eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence                     344455555444444555544444444444444444454444444444444    4444444433

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=2e-30  Score=170.65  Aligned_cols=140  Identities=24%  Similarity=0.390  Sum_probs=104.8

Q ss_pred             CCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcC-CCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCC
Q 031662           12 TQTTETSSPENIDALLAAARYDDIEDVISLASAG-VPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNT   90 (155)
Q Consensus        12 ~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t   90 (155)
                      +......+..+.||||.|+..|+.+++++|++.+ .+++..+..|.||||+|+..++.+++++|++.|++++.++..|.|
T Consensus        67 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  146 (237)
T 3b7b_A           67 GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENI  146 (237)
T ss_dssp             TCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCC
Confidence            3334445566667777777777777777777776 666667777777777777777777777777777777777777777


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           91 PLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        91 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      |||+|+..|+.+++++|++.|++++.++..|.|||++|+..++.+++++|+++|++++..+
T Consensus       147 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d  207 (237)
T 3b7b_A          147 CLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN  207 (237)
T ss_dssp             HHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccC
Confidence            8888777777788888887777777777777888888888888888888888877776554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.97  E-value=6.4e-32  Score=164.37  Aligned_cols=129  Identities=27%  Similarity=0.346  Sum_probs=119.6

Q ss_pred             CCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Q 031662           17 TSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYAC   96 (155)
Q Consensus        17 ~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~   96 (155)
                      ..+..|.||||.|+..|+.+++++|++.+.+++.++..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            44678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHh
Q 031662           97 LNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA  145 (155)
Q Consensus        97 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~  145 (155)
                      ..++.+++++|+++|++++.+|..|.||+++|+..+..+++++|.+.+.
T Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            9999999999999999999999999999999999999999988877654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.97  E-value=7.7e-31  Score=176.37  Aligned_cols=138  Identities=22%  Similarity=0.251  Sum_probs=125.7

Q ss_pred             ccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCC--------------
Q 031662           15 TETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD--------------   80 (155)
Q Consensus        15 ~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~--------------   80 (155)
                      ....+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++++++              
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  117 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ  117 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhccc
Confidence            456678899999999999999999999999999999999999999999999999999999987654              


Q ss_pred             ---------------------------------CCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCC-CCCHHH
Q 031662           81 ---------------------------------INASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSH-EQTPID  126 (155)
Q Consensus        81 ---------------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~~t~l~  126 (155)
                                                       ++.++..|.||||+|+..|+.+++++|+++|++++.++.. |+||||
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~  197 (282)
T 1oy3_D          118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH  197 (282)
T ss_dssp             --------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred             ccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHH
Confidence                                             6677889999999999999999999999999999998854 999999


Q ss_pred             HHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662          127 EALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       127 ~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      +|+..|+.+++++|+++|++++..+.
T Consensus       198 ~A~~~~~~~~v~~Ll~~gad~~~~d~  223 (282)
T 1oy3_D          198 LAVEAQAASVLELLLKAGADPTARMY  223 (282)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCccccc
Confidence            99999999999999999999987654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=2.3e-30  Score=169.72  Aligned_cols=138  Identities=28%  Similarity=0.397  Sum_probs=131.6

Q ss_pred             ccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q 031662           15 TETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY   94 (155)
Q Consensus        15 ~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~   94 (155)
                      ....+..|.||||+|+..|+.+++++|++.+.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+
T Consensus        33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  112 (231)
T 3aji_A           33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHY  112 (231)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            44567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           95 ACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        95 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      |+..++.+++++|+++|++++.++..|.|||++|+..|+.+++++|+++|++++..+.
T Consensus       113 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  170 (231)
T 3aji_A          113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT  170 (231)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCC
Confidence            9999999999999999999999999999999999999999999999999999887653

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=2.2e-30  Score=170.06  Aligned_cols=132  Identities=23%  Similarity=0.309  Sum_probs=123.6

Q ss_pred             ccHHHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCC-----CCCCCCCCCHHHH
Q 031662           21 ENIDALLAAARYDDIEDVISLASA-GVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDI-----NASNEEKNTPLHY   94 (155)
Q Consensus        21 ~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~-----~~~~~~~~t~l~~   94 (155)
                      .|.||||.|++.|+.+++++|++. +.+++.++..|.||||+|+..++.+++++|++.++++     +.++..|.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            467899999999999999999998 9999999999999999999999999999999999876     6678899999999


Q ss_pred             HHhcCcHHHHHHHHHcCCCCcccCC-------------CCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           95 ACLNGHTEVAKKLVLSGANISVLNS-------------HEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        95 a~~~~~~~~~~~Ll~~~~~~~~~~~-------------~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      |+..|+.+++++|+++|++++.++.             .|.||||+|+..|+.+++++|+++|++++..+.
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~  152 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS  152 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence            9999999999999999999988765             799999999999999999999999999887653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=7.6e-31  Score=172.75  Aligned_cols=140  Identities=24%  Similarity=0.297  Sum_probs=129.7

Q ss_pred             cccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCC------CCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCC
Q 031662            9 INRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVP------LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDIN   82 (155)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~------~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~   82 (155)
                      ++.+.++...+..|.||||+|+..|+.+++++|++.+.+      ++..+..|.||||+|+..++.+++++|+++|++++
T Consensus        65 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  144 (236)
T 1ikn_D           65 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN  144 (236)
T ss_dssp             CSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            344555666778899999999999999999999999865      45677889999999999999999999999999999


Q ss_pred             CCCC-CCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcc
Q 031662           83 ASNE-EKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLE  148 (155)
Q Consensus        83 ~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  148 (155)
                      .++. .|.||||+|+..|+.+++++|+++|++++.++..|+||+++|+..|+.+++++|+++|++..
T Consensus       145 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          145 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            9997 99999999999999999999999999999999999999999999999999999999999765

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=1.2e-30  Score=173.52  Aligned_cols=135  Identities=22%  Similarity=0.275  Sum_probs=129.5

Q ss_pred             CCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCC-CCCCCCCCCCCHHHHHH
Q 031662           18 SSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGV-DINASNEEKNTPLHYAC   96 (155)
Q Consensus        18 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~t~l~~a~   96 (155)
                      .+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|++.+. +++.++..|.||||+|+
T Consensus        53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  132 (253)
T 1yyh_A           53 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA  132 (253)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999987 89999999999999999


Q ss_pred             hcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           97 LNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        97 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      ..++.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus       133 ~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  188 (253)
T 1yyh_A          133 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN  188 (253)
T ss_dssp             HHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999987653

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=2.2e-30  Score=170.68  Aligned_cols=132  Identities=23%  Similarity=0.295  Sum_probs=74.2

Q ss_pred             CcccHHHHHHHHHhCCHHHHHHHHHcCC----CCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCC-CCCCCHHH
Q 031662           19 SPENIDALLAAARYDDIEDVISLASAGV----PLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN-EEKNTPLH   93 (155)
Q Consensus        19 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~   93 (155)
                      +..|.||||+|+..++.+++++|++.+.    +++..+..|.||||+|+..++.+++++|++.|++++..+ ..|.||||
T Consensus        76 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~  155 (241)
T 1k1a_A           76 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLI  155 (241)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHH
Confidence            3444455555555555555555555443    444444455555555555555555555555555555555 45556666


Q ss_pred             HHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccC
Q 031662           94 YACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELG  150 (155)
Q Consensus        94 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~  150 (155)
                      +|+..++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++..
T Consensus       156 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  212 (241)
T 1k1a_A          156 HAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK  212 (241)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCc
Confidence            666666666666666666666666666666666666666666666666666655543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.3e-30  Score=175.00  Aligned_cols=131  Identities=25%  Similarity=0.330  Sum_probs=122.0

Q ss_pred             CCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCC--------------CCccHHHHHHhCCCHHHHHHHHh---cCCC
Q 031662           18 SSPENIDALLAAARYDDIEDVISLASAGVPLDSKDS--------------QGRTALHMASANGHLGIVEYLIG---RGVD   80 (155)
Q Consensus        18 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~--------------~~~~~l~~a~~~~~~~~~~~ll~---~~~~   80 (155)
                      .+..|.||||+|+..|+.+++++|++.|++++..+.              .|.||||+|+..++.+++++|++   .|++
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad  176 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD  176 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC
Confidence            456899999999999999999999999999998886              79999999999999999999999   9999


Q ss_pred             CCCCCCCCCCHHHHHHhcCc---------HHHHHHHHHcCCCCc-------ccCCCCCCHHHHHHHCCCHHHHHHHHHHH
Q 031662           81 INASNEEKNTPLHYACLNGH---------TEVAKKLVLSGANIS-------VLNSHEQTPIDEALSRGKMDIIDAINTAV  144 (155)
Q Consensus        81 ~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~-------~~~~~~~t~l~~a~~~~~~~~~~~L~~~g  144 (155)
                      ++.+|..|.||||+|+..++         .+++++|+++|++++       .+|..|+|||++|+..|+.+++++|+++|
T Consensus       177 ~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  256 (273)
T 2pnn_A          177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE  256 (273)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCC
Confidence            99999999999999999988         799999999999886       58999999999999999999999999999


Q ss_pred             h-hcc
Q 031662          145 A-QLE  148 (155)
Q Consensus       145 ~-~~~  148 (155)
                      + |..
T Consensus       257 a~dp~  261 (273)
T 2pnn_A          257 IHEPE  261 (273)
T ss_dssp             TC---
T ss_pred             CCCch
Confidence            9 443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=3.3e-30  Score=165.75  Aligned_cols=135  Identities=23%  Similarity=0.242  Sum_probs=125.8

Q ss_pred             ccCCCccCCCcccHHHHHHHHHhCCHHHHHHHH-HcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcC-CCCCCCCCC
Q 031662           10 NRTQTTETSSPENIDALLAAARYDDIEDVISLA-SAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRG-VDINASNEE   87 (155)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~   87 (155)
                      +.+.++...+..+.||||+|+..|+.+++++|+ ..+.+++..+..|.||||+|+..++.+++++|++.| ++++.++..
T Consensus        60 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  139 (201)
T 3hra_A           60 DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF  139 (201)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTT
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCC
Confidence            345555667788999999999999999999999 566799999999999999999999999999999998 999999999


Q ss_pred             CCCHHHHHHhcCc-----HHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHH
Q 031662           88 KNTPLHYACLNGH-----TEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAV  144 (155)
Q Consensus        88 ~~t~l~~a~~~~~-----~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g  144 (155)
                      |.||||+|+..++     .+++++|+++|++++.++..|+|||++|+..|+.+++++|+++|
T Consensus       140 g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             SCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            9999999999998     99999999999999999999999999999999999999999876

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=174.92  Aligned_cols=151  Identities=22%  Similarity=0.360  Sum_probs=107.4

Q ss_pred             CCCCCcccccCCCccCCCcccHHHHHHHHHhCCH-HHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCC
Q 031662            2 EQDADPSINRTQTTETSSPENIDALLAAARYDDI-EDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD   80 (155)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~-~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~   80 (155)
                      +.|+++...........+..+.+||+.|+..+.. .++++|++.|+++|..+..|.||||+|+..++.+++++|++.+++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~  111 (269)
T 4b93_B           32 EWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN  111 (269)
T ss_dssp             TCC----------------------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC
T ss_pred             HCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC
Confidence            4455555444555667778899999999987765 588999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           81 INASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        81 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      ++.++..|.||+++|+..++.+++++|++.|++++.+|..|+|||++|+..|+.+++++|+++|++++..+.
T Consensus       112 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~  183 (269)
T 4b93_B          112 AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNN  183 (269)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCT
T ss_pred             cCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCcccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999987654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=7.2e-30  Score=167.98  Aligned_cols=140  Identities=29%  Similarity=0.469  Sum_probs=98.2

Q ss_pred             CCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcC-CCCCCCCCCCCC
Q 031662           12 TQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRG-VDINASNEEKNT   90 (155)
Q Consensus        12 ~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~t   90 (155)
                      +.+....+..|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|++.+ .+++.++..|.|
T Consensus        34 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  113 (237)
T 3b7b_A           34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT  113 (237)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCC
T ss_pred             CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCC
Confidence            3344445556667777777777777777777777777666667777777777777777777777766 666666777777


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           91 PLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        91 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      |||+|+..++.+++++|+++|++++.++..|.|||++|+..|+.+++++|+++|++++..+
T Consensus       114 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~  174 (237)
T 3b7b_A          114 PMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN  174 (237)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC
Confidence            7777777777777777777777777777777777777777777777777777777665543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.3e-30  Score=173.57  Aligned_cols=136  Identities=18%  Similarity=0.201  Sum_probs=124.7

Q ss_pred             CCCccC----CCcccHHHHHHHHHh---CCHHHHHHHHHcCCCCCC-----------CCCCCccHHHHHHhCCCHHHHHH
Q 031662           12 TQTTET----SSPENIDALLAAARY---DDIEDVISLASAGVPLDS-----------KDSQGRTALHMASANGHLGIVEY   73 (155)
Q Consensus        12 ~~~~~~----~~~~~~~~l~~A~~~---~~~~~v~~ll~~~~~~~~-----------~~~~~~~~l~~a~~~~~~~~~~~   73 (155)
                      +.++..    .+..|.||||+|+..   |+.+++++|++.|.+++.           .+..|.||||+|+..++.+++++
T Consensus        29 g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~  108 (256)
T 2etb_A           29 SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKL  108 (256)
T ss_dssp             TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHH
T ss_pred             CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHH
Confidence            444444    678999999999999   999999999999876653           33679999999999999999999


Q ss_pred             HHhcCCCCCCCCCC-------------CCCHHHHHHhcCcHHHHHHHHH---cCCCCcccCCCCCCHHHHHHH--CCCHH
Q 031662           74 LIGRGVDINASNEE-------------KNTPLHYACLNGHTEVAKKLVL---SGANISVLNSHEQTPIDEALS--RGKMD  135 (155)
Q Consensus        74 ll~~~~~~~~~~~~-------------~~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~t~l~~a~~--~~~~~  135 (155)
                      |+++|++++.++..             |.||||+|+..|+.+++++|++   .|++++.+|..|+||||+|+.  .++.+
T Consensus       109 Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~  188 (256)
T 2etb_A          109 LVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPE  188 (256)
T ss_dssp             HHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHH
T ss_pred             HHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCch
Confidence            99999999999876             9999999999999999999999   999999999999999999999  88888


Q ss_pred             -------HHHHHHHHHhhc
Q 031662          136 -------IIDAINTAVAQL  147 (155)
Q Consensus       136 -------~~~~L~~~g~~~  147 (155)
                             ++++|+++|+++
T Consensus       189 ~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          189 NSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHcCCCc
Confidence                   999999999999

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=1.3e-29  Score=167.02  Aligned_cols=142  Identities=20%  Similarity=0.219  Sum_probs=129.0

Q ss_pred             cCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCC----CCCCCCC
Q 031662           11 RTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGV----DINASNE   86 (155)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~----~~~~~~~   86 (155)
                      .+...+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|++.+.    +++..+.
T Consensus        35 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  114 (241)
T 1k1a_A           35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY  114 (241)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCT
T ss_pred             cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCc
Confidence            455666677889999999999999999999999999999999999999999999999999999999887    7888899


Q ss_pred             CCCCHHHHHHhcCcHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           87 EKNTPLHYACLNGHTEVAKKLVLSGANISVLN-SHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        87 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      .|.||||+|+..++.+++++|++.|++++..+ ..|.|||++|+..|+.+++++|+++|++++..+.
T Consensus       115 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  181 (241)
T 1k1a_A          115 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY  181 (241)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            99999999999999999999999999999888 7899999999999999999999999999876653

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=1.3e-29  Score=157.06  Aligned_cols=129  Identities=26%  Similarity=0.333  Sum_probs=121.9

Q ss_pred             cHHHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCc
Q 031662           22 NIDALLAAARYDDIEDVISLASA-GVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH  100 (155)
Q Consensus        22 ~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~  100 (155)
                      +.++|+.|++.|+.+++++|++. +.+++..+..|.||||+ +..++.+++++|++.|++++.++..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            57899999999999999999998 34888899999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662          101 TEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       101 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      .+++++|+++|++++.++..|+||||+|+..|+.+++++|+++ ++++..+.
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~  131 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDA  131 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCC
Confidence            9999999999999999999999999999999999999999999 88776543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.97  E-value=1e-30  Score=166.68  Aligned_cols=132  Identities=14%  Similarity=0.132  Sum_probs=122.0

Q ss_pred             cccHHHHHHHHHhCCH----HHHHHHHHcCCCCCCCCCCCccHHHHHHhCCC------HHHHHHHHhcCCCCCCCCCCCC
Q 031662           20 PENIDALLAAARYDDI----EDVISLASAGVPLDSKDSQGRTALHMASANGH------LGIVEYLIGRGVDINASNEEKN   89 (155)
Q Consensus        20 ~~~~~~l~~A~~~~~~----~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~------~~~~~~ll~~~~~~~~~~~~~~   89 (155)
                      ..|.||||+|+..++.    +++++|+++|++++.++..|+||||+|+..++      .+++++|+++|++++.+|..|.
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~  115 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK  115 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence            5689999999999975    58999999999999999999999999999886      5789999999999999999999


Q ss_pred             -CHHHHHHhcC-----cHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           90 -TPLHYACLNG-----HTEVAKKLVL-SGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        90 -t~l~~a~~~~-----~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                       ||||+|+..+     +.+++++|++ +|++++.+|..|+|||++|++.++.+++++|.++..+.++++
T Consensus       116 ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          116 IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             BCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             chHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence             9999999844     4679999999 999999999999999999999999999999999988877765

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.97  E-value=3e-30  Score=154.28  Aligned_cols=113  Identities=27%  Similarity=0.417  Sum_probs=106.6

Q ss_pred             CcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Q 031662           19 SPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN   98 (155)
Q Consensus        19 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~   98 (155)
                      ...+.+|||.|+..|+.+++++|++.+.+++..+..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHC
Q 031662           99 GHTEVAKKLVLSGANISVLNSHEQTPIDEALSR  131 (155)
Q Consensus        99 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~  131 (155)
                      ++.+++++|+++|++++.++..|+||+++|...
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence            999999999999999999999999999999443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=5.1e-30  Score=182.09  Aligned_cols=140  Identities=24%  Similarity=0.317  Sum_probs=120.3

Q ss_pred             CCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCH
Q 031662           12 TQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTP   91 (155)
Q Consensus        12 ~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~   91 (155)
                      +......+..|.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||
T Consensus       235 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  314 (437)
T 1n11_A          235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP  314 (437)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCH
T ss_pred             CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCH
Confidence            33445566678888888888888888888888888888888888888888888888888888888888888888889999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           92 LHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        92 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      ||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++..+
T Consensus       315 L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~  374 (437)
T 1n11_A          315 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS  374 (437)
T ss_dssp             HHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred             HHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCC
Confidence            999999999999999999999999888889999999999999999999999998887654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.97  E-value=6.1e-31  Score=171.86  Aligned_cols=133  Identities=23%  Similarity=0.290  Sum_probs=116.4

Q ss_pred             CcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHh
Q 031662           19 SPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGR-GVDINASNEEKNTPLHYACL   97 (155)
Q Consensus        19 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~t~l~~a~~   97 (155)
                      +..+.||||+|+..|+.+++++|++.+.+++.++..|.||||+|+..++.+++++|++. |++++.+|..|.||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            34667999999999999999999999999999999999999999999999999999998 99999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           98 NGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        98 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      .|+.+++++|+++|++++.++..|+|||++|+..++.++++.|+..|+...+.+
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccc
Confidence            999999999999999999999999999999999999999999999999887654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=7.6e-30  Score=172.44  Aligned_cols=130  Identities=23%  Similarity=0.374  Sum_probs=68.6

Q ss_pred             CCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Q 031662           18 SSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACL   97 (155)
Q Consensus        18 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~   97 (155)
                      .+..|.||||+|+..|+.+++++|++.|.+++.++..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+.
T Consensus        55 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~  134 (285)
T 3d9h_A           55 DAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV  134 (285)
T ss_dssp             SSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHH
T ss_pred             CCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcc
Q 031662           98 NGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLE  148 (155)
Q Consensus        98 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  148 (155)
                      .|+.+++++|+++|++++..+ .|.|||++|+..|+.+++++|+++|++++
T Consensus       135 ~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  184 (285)
T 3d9h_A          135 SGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNID  184 (285)
T ss_dssp             HTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             cCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            555555555555544444322 24444444444444444444444444443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=4e-30  Score=173.15  Aligned_cols=137  Identities=18%  Similarity=0.252  Sum_probs=102.1

Q ss_pred             ccCCCcccHHHHHHHHHhCCHHHHHHHHHcCC-CCCCCCCCCccHHHHHH-----hCCCHHHHHHHHhcCCCCCCCCCCC
Q 031662           15 TETSSPENIDALLAAARYDDIEDVISLASAGV-PLDSKDSQGRTALHMAS-----ANGHLGIVEYLIGRGVDINASNEEK   88 (155)
Q Consensus        15 ~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~-~~~~~~~~~~~~l~~a~-----~~~~~~~~~~ll~~~~~~~~~~~~~   88 (155)
                      .+..+..|.||||+|+..|+.+++++|++.|. +++..+..|.||||+|+     ..++.+++++|++.|...+..+..|
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g  183 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAG  183 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTC
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCC
Confidence            45667889999999999999999999999997 88877777777777776     3455666777777776666666667


Q ss_pred             CCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHH-HHhhcccCC
Q 031662           89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINT-AVAQLELGG  151 (155)
Q Consensus        89 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~-~g~~~~~~~  151 (155)
                      .||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++ .|++++..+
T Consensus       184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d  247 (276)
T 4hbd_A          184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTD  247 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcC
Confidence            777777777777777777777777777777777777777777777777777776 666666544

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=2.2e-29  Score=169.17  Aligned_cols=134  Identities=24%  Similarity=0.288  Sum_probs=128.8

Q ss_pred             CcccHHHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHhCCC----HHHHHHHHhcCCCCCCCCCCCCCHHH
Q 031662           19 SPENIDALLAAARYDDIEDVISLASA-GVPLDSKDSQGRTALHMASANGH----LGIVEYLIGRGVDINASNEEKNTPLH   93 (155)
Q Consensus        19 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~t~l~   93 (155)
                      +..+.+|||.|+..|+.+++++|++. +.+++..+..|.||||+|+..++    .+++++|+++|++++.++..|.||||
T Consensus       145 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~  224 (285)
T 1wdy_A          145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI  224 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence            56788999999999999999999998 99999999999999999999999    89999999999999999999999999


Q ss_pred             HHHhcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           94 YACLNGHTEVAKKLVL-SGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        94 ~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      +|+..++.+++++|++ .|++++.++..|+|||++|+..|+.+++++|+++|++++.++.
T Consensus       225 ~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~  284 (285)
T 1wdy_A          225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             HHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence            9999999999999999 8999999999999999999999999999999999999998764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=2.3e-30  Score=180.13  Aligned_cols=132  Identities=16%  Similarity=0.201  Sum_probs=127.0

Q ss_pred             CCcccHHHHHHHHHhC--CHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCC-----CCCCCCCCCC
Q 031662           18 SSPENIDALLAAARYD--DIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD-----INASNEEKNT   90 (155)
Q Consensus        18 ~~~~~~~~l~~A~~~~--~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-----~~~~~~~~~t   90 (155)
                      .+..|.||||+|+..|  +.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++     ++.++..|.|
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t  213 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS  213 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc
Confidence            5668899999999999  99999999999999999999999999999999999999999999988     9999999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhccc
Q 031662           91 PLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLEL  149 (155)
Q Consensus        91 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~  149 (155)
                      |||+|+..|+.+++++|+++|++++.+|..|+|||++|+..|+.+++++|+++|+++..
T Consensus       214 ~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  272 (364)
T 3ljn_A          214 HLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLI  272 (364)
T ss_dssp             TTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhh
Confidence            99999999999999999999999999999999999999999999999999999988643

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=1.9e-29  Score=174.06  Aligned_cols=72  Identities=25%  Similarity=0.331  Sum_probs=45.7

Q ss_pred             CCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           80 DINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        80 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      +++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus       239 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~  310 (351)
T 3utm_A          239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIIS  310 (351)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             CcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcC
Confidence            334445556666666666666666666666666666666666666666666666666666666666665544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.7e-30  Score=178.71  Aligned_cols=143  Identities=19%  Similarity=0.116  Sum_probs=128.6

Q ss_pred             ccCCCccC-CCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCC---HHHHHHHHhcC-CCCCCC
Q 031662           10 NRTQTTET-SSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGH---LGIVEYLIGRG-VDINAS   84 (155)
Q Consensus        10 ~~~~~~~~-~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~-~~~~~~   84 (155)
                      ..+.+++. .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++   .++++.|++.+ .+++.+
T Consensus       118 ~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~  197 (327)
T 1sw6_A          118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE  197 (327)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred             hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCC
Confidence            34455666 68899999999999999999999999999999999999999999999998   67778888775 679999


Q ss_pred             CCCCCCHHHHHHh----cCcHHHHHHHHHcCC---------------------------------------------CCc
Q 031662           85 NEEKNTPLHYACL----NGHTEVAKKLVLSGA---------------------------------------------NIS  115 (155)
Q Consensus        85 ~~~~~t~l~~a~~----~~~~~~~~~Ll~~~~---------------------------------------------~~~  115 (155)
                      +..|.||||+|+.    .|+.+++++|++.+.                                             +++
T Consensus       198 d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n  277 (327)
T 1sw6_A          198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN  277 (327)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTT
T ss_pred             CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCC
Confidence            9999999999999    899999999987742                                             578


Q ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662          116 VLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       116 ~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      .+|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus       278 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~  314 (327)
T 1sw6_A          278 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK  314 (327)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence            8899999999999999999999999999999987654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=2.1e-29  Score=170.24  Aligned_cols=133  Identities=21%  Similarity=0.292  Sum_probs=73.8

Q ss_pred             ccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q 031662           15 TETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY   94 (155)
Q Consensus        15 ~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~   94 (155)
                      +...+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|++++..+ .|.||||+
T Consensus        85 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~  163 (285)
T 3d9h_A           85 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHE  163 (285)
T ss_dssp             SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHH
T ss_pred             CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHH
Confidence            33444555666666666666666666666666666555556666666665555555555555555554322 25555555


Q ss_pred             HHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcc
Q 031662           95 ACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLE  148 (155)
Q Consensus        95 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  148 (155)
                      |+..|+.+++++|+++|++++.++..|+|||++|+..|+.+++++|+++|++++
T Consensus       164 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  217 (285)
T 3d9h_A          164 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN  217 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC
Confidence            555555555555555555555555555555555555555555555555555443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=6.4e-30  Score=177.87  Aligned_cols=97  Identities=19%  Similarity=0.214  Sum_probs=53.7

Q ss_pred             CCccHHHHHHhCC--CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCC-----CcccCCCCCCHHH
Q 031662           54 QGRTALHMASANG--HLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGAN-----ISVLNSHEQTPID  126 (155)
Q Consensus        54 ~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~~~t~l~  126 (155)
                      .|.||||+|+..+  +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++     ++..+..|+||||
T Consensus       137 ~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~  216 (364)
T 3ljn_A          137 KGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH  216 (364)
T ss_dssp             SCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH
T ss_pred             CCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH
Confidence            4455555555555  55555555555555555555555555555555555555555555555     5555555555555


Q ss_pred             HHHHCCCHHHHHHHHHHHhhcccC
Q 031662          127 EALSRGKMDIIDAINTAVAQLELG  150 (155)
Q Consensus       127 ~a~~~~~~~~~~~L~~~g~~~~~~  150 (155)
                      +|+..|+.+++++|+++|++++..
T Consensus       217 ~A~~~g~~~~v~~Ll~~gad~~~~  240 (364)
T 3ljn_A          217 WAILINWEDVAMRFVEMGIDVNME  240 (364)
T ss_dssp             HHHTTTCHHHHHHHHTTTCCTTCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCC
Confidence            555555555555555555555443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=2.8e-29  Score=164.24  Aligned_cols=136  Identities=25%  Similarity=0.303  Sum_probs=126.5

Q ss_pred             CCCcccHHHHHHHHHhCCHHHHHHHHHcC--CCCCC-CCCCCccHHHHHHhCCCHHHHHHHHhcC--CCCCCCCCCCCCH
Q 031662           17 TSSPENIDALLAAARYDDIEDVISLASAG--VPLDS-KDSQGRTALHMASANGHLGIVEYLIGRG--VDINASNEEKNTP   91 (155)
Q Consensus        17 ~~~~~~~~~l~~A~~~~~~~~v~~ll~~~--~~~~~-~~~~~~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~t~   91 (155)
                      ..+..|.||||+|+..|+.+++++|++.+  .+++. .+..|.||||+|+..++.+++++|+++|  .+++.++..|.||
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~  110 (228)
T 2dzn_A           31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC  110 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCH
Confidence            36788999999999999999999999999  55555 7788999999999999999999999998  8899999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHH-hhcccCCC
Q 031662           92 LHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAV-AQLELGGF  152 (155)
Q Consensus        92 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g-~~~~~~~~  152 (155)
                      ||+|+..++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++| ++++..+.
T Consensus       111 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~  172 (228)
T 2dzn_A          111 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK  172 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCT
T ss_pred             HHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCC
Confidence            99999999999999999999999999999999999999999999999999999 88876543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=5.8e-30  Score=173.05  Aligned_cols=131  Identities=20%  Similarity=0.203  Sum_probs=103.0

Q ss_pred             ccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q 031662           15 TETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY   94 (155)
Q Consensus        15 ~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~   94 (155)
                      +...+..|.||||+|+..|+.+++++|++.|++++..+  |.||||+|+..++.+++++|+++|++++.++..|.||||+
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  101 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY  101 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH
Confidence            45666778888888888888888888888887777663  6788888888888888888888888888888888888888


Q ss_pred             HHhcCcHHHHHHHHHcCCCCcccCCCC-CCHHHHHHHCCCHHHHHHHHHHHhhc
Q 031662           95 ACLNGHTEVAKKLVLSGANISVLNSHE-QTPIDEALSRGKMDIIDAINTAVAQL  147 (155)
Q Consensus        95 a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~L~~~g~~~  147 (155)
                      |+..|+.+++++|+++|++++.++..| .|||++|+..|+.+++++|+++|++.
T Consensus       102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~  155 (285)
T 3kea_A          102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  155 (285)
T ss_dssp             HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred             HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Confidence            888888888888888888888777777 57777777777777777777766554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=3.2e-30  Score=170.31  Aligned_cols=133  Identities=23%  Similarity=0.197  Sum_probs=95.0

Q ss_pred             CcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Q 031662           19 SPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN   98 (155)
Q Consensus        19 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~   98 (155)
                      ...|.|||+.|++.++.+.++.++++|.+++.. ..+.|+||+|+..++.+++++|++.|++++.+|..|.||||+|+..
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            356899999999999999999999999998754 6789999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           99 GHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        99 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      |+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus        81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  134 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY  134 (239)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecC
Confidence            999999999999999999999999999999999999999999999999987654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=1.6e-29  Score=179.55  Aligned_cols=135  Identities=25%  Similarity=0.363  Sum_probs=92.2

Q ss_pred             CccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Q 031662           14 TTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLH   93 (155)
Q Consensus        14 ~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~   93 (155)
                      ++...+..|.||||+|+..|+++++++|+++|.+++..+..+.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus         6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   85 (437)
T 1n11_A            6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH   85 (437)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence            34445566777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcc
Q 031662           94 YACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLE  148 (155)
Q Consensus        94 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  148 (155)
                      +|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++++++..
T Consensus        86 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~  140 (437)
T 1n11_A           86 CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA  140 (437)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC
T ss_pred             HHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc
Confidence            7777777777777777777777777777777777777777777777776666554

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=1.3e-28  Score=167.05  Aligned_cols=135  Identities=26%  Similarity=0.436  Sum_probs=124.6

Q ss_pred             CCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Q 031662           18 SSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACL   97 (155)
Q Consensus        18 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~   97 (155)
                      .+..+.++|+.|+..|+++++++|++.|.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+.
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~  115 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS  115 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCcccCC----------------------------------------------------------
Q 031662           98 NGHTEVAKKLVLSGANISVLNS----------------------------------------------------------  119 (155)
Q Consensus        98 ~~~~~~~~~Ll~~~~~~~~~~~----------------------------------------------------------  119 (155)
                      .|+.+++++|+++|++++..+.                                                          
T Consensus       116 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  195 (299)
T 1s70_B          116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (299)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             cCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhh
Confidence            9999999999999998876553                                                          


Q ss_pred             --CCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662          120 --HEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       120 --~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                        .|.||||+|+..|+.+++++|+++|++++..+.
T Consensus       196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~  230 (299)
T 1s70_B          196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY  230 (299)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT
T ss_pred             cCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCC
Confidence              467888899999999999999999999887654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=2.1e-29  Score=169.61  Aligned_cols=131  Identities=26%  Similarity=0.428  Sum_probs=125.4

Q ss_pred             CccCCCcccHHHHHHHH-----HhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC
Q 031662           14 TTETSSPENIDALLAAA-----RYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK   88 (155)
Q Consensus        14 ~~~~~~~~~~~~l~~A~-----~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~   88 (155)
                      .....+..|.|||++|+     ..++.+++++|++.|...+..+..|.||||+|+..++.+++++|++.|++++.+|..|
T Consensus       137 ~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G  216 (276)
T 4hbd_A          137 KVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDG  216 (276)
T ss_dssp             CTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Confidence            66677889999999999     7799999999999999988889999999999999999999999999999999999999


Q ss_pred             CCHHHHHHhcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHH
Q 031662           89 NTPLHYACLNGHTEVAKKLVL-SGANISVLNSHEQTPIDEALSRGKMDIIDAINTAV  144 (155)
Q Consensus        89 ~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g  144 (155)
                      .||||+|+..|+.+++++|++ .|++++.+|..|+|||++|+..|+.+++++|++++
T Consensus       217 ~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          217 STALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            999999999999999999999 89999999999999999999999999999999875

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=2e-28  Score=164.53  Aligned_cols=131  Identities=24%  Similarity=0.319  Sum_probs=125.7

Q ss_pred             cccHHHHHHHHHhCCHHHHHHHHHcCCCCCCC-CCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Q 031662           20 PENIDALLAAARYDDIEDVISLASAGVPLDSK-DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN   98 (155)
Q Consensus        20 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~   98 (155)
                      ..|.++|+.|++.|+++++++|++.+.+++.. +..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            36889999999999999999999999999887 77799999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccC
Q 031662           99 GHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELG  150 (155)
Q Consensus        99 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~  150 (155)
                      |+.+++++|+++|++++.++..|.|||++|+..|+.+++++|+++|++++..
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  134 (285)
T 1wdy_A           83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR  134 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccc
Confidence            9999999999999999999999999999999999999999999999998765

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.96  E-value=5.6e-29  Score=171.54  Aligned_cols=150  Identities=23%  Similarity=0.286  Sum_probs=120.9

Q ss_pred             CCCCCcccccCC--CccCCCcccHHHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCccHHHHHHhCCC----HHHHHHH
Q 031662            2 EQDADPSINRTQ--TTETSSPENIDALLAAARYDDIEDVISLAS-AGVPLDSKDSQGRTALHMASANGH----LGIVEYL   74 (155)
Q Consensus         2 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~l   74 (155)
                      +.|+++++....  .....+..|.||||+|++.|+.+++++|++ .|++++..+..|.+++++++..+.    ..++++|
T Consensus       146 ~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lL  225 (337)
T 4g8k_A          146 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL  225 (337)
T ss_dssp             HTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHH
T ss_pred             HcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHH
Confidence            356666654432  334556778999999999999999999996 589999898888888887765443    3577888


Q ss_pred             HhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           75 IGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLS-GANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        75 l~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      +++|++++.++..|.||||+|+..++.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus       226 l~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~  303 (337)
T 4g8k_A          226 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  303 (337)
T ss_dssp             HHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCC
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            888999988888899999999999999999888874 78888888899999999999999999999999988887543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=3.4e-30  Score=174.16  Aligned_cols=129  Identities=17%  Similarity=0.154  Sum_probs=97.5

Q ss_pred             cHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC-CCHHHHHHhcCc
Q 031662           22 NIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK-NTPLHYACLNGH  100 (155)
Q Consensus        22 ~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~t~l~~a~~~~~  100 (155)
                      |.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.++..| .||||+|+..|+
T Consensus        62 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~  141 (285)
T 3kea_A           62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND  141 (285)
T ss_dssp             TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Confidence            6677888888888888888888887777777777888888888888888888888777777777777 677777777777


Q ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662          101 TEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus       101 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      .+++++|+++|++.... ..|.||||+|+..|+.+++++|+++|++++..+
T Consensus       142 ~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~  191 (285)
T 3kea_A          142 VSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNN  191 (285)
T ss_dssp             HHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCccc
Confidence            77777777777665322 266777777777777777777777777776554

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.96  E-value=8.4e-30  Score=162.04  Aligned_cols=127  Identities=26%  Similarity=0.212  Sum_probs=115.4

Q ss_pred             CcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCC-CCCCCHHHHHHh
Q 031662           19 SPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN-EEKNTPLHYACL   97 (155)
Q Consensus        19 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~a~~   97 (155)
                      +..|.||||.|++.|+.+++++|++ +.+++.++..|.||||+|+..++.+++++|+++|++++.++ ..|.||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            4688999999999999999999999 99999999999999999999999999999999999999988 899999999999


Q ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhh
Q 031662           98 NGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQ  146 (155)
Q Consensus        98 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~  146 (155)
                      .|+.+++++|+++|++++.+|..|+|||++|++.++.+..+.++..+++
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~  168 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR  168 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHH
Confidence            9999999999999999999999999999999887554444444444443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.96  E-value=4.9e-29  Score=165.11  Aligned_cols=128  Identities=27%  Similarity=0.297  Sum_probs=120.6

Q ss_pred             CcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCC-CCCCCHHHHHHh
Q 031662           19 SPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN-EEKNTPLHYACL   97 (155)
Q Consensus        19 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~a~~   97 (155)
                      +..|.||||.|++.|+.+++++|++ +.+++.++..|.||||+|+..++.+++++|+++|++++.++ ..|.||||+|+.
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            3578999999999999999999999 99999999999999999999999999999999999999988 889999999999


Q ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH----------------HCCCHHHHHHHHHHHhhc
Q 031662           98 NGHTEVAKKLVLSGANISVLNSHEQTPIDEAL----------------SRGKMDIIDAINTAVAQL  147 (155)
Q Consensus        98 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~----------------~~~~~~~~~~L~~~g~~~  147 (155)
                      .|+.+++++|+++|++++.++..|+|||++|+                ..|+.+++++|++++.+.
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~~  186 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEY  186 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhcccc
Confidence            99999999999999999999999999999888                668899999999987653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=3.4e-29  Score=166.91  Aligned_cols=129  Identities=19%  Similarity=0.218  Sum_probs=118.9

Q ss_pred             CcccHHHHHHHH---HhCCHHHHHHHHHcCCC-----------CCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCC
Q 031662           19 SPENIDALLAAA---RYDDIEDVISLASAGVP-----------LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS   84 (155)
Q Consensus        19 ~~~~~~~l~~A~---~~~~~~~v~~ll~~~~~-----------~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~   84 (155)
                      +..|.||||+|+   +.|+.+++++|++.+.+           ++..+..|.||||+|+..++.+++++|+++|++++.+
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  122 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ  122 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc
Confidence            366999999999   77999999999998743           3445568999999999999999999999999999999


Q ss_pred             C--------------CCCCCHHHHHHhcCcHHHHHHHHH---cCCCCcccCCCCCCHHHHHHHCCC---------HHHHH
Q 031662           85 N--------------EEKNTPLHYACLNGHTEVAKKLVL---SGANISVLNSHEQTPIDEALSRGK---------MDIID  138 (155)
Q Consensus        85 ~--------------~~~~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~  138 (155)
                      +              ..|.||||+|+..|+.+++++|++   .|++++.+|..|+||||+|+..++         .++++
T Consensus       123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~  202 (260)
T 3jxi_A          123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD  202 (260)
T ss_dssp             CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred             ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHH
Confidence            8              689999999999999999999999   999999999999999999998887         79999


Q ss_pred             HHHHHHhhc
Q 031662          139 AINTAVAQL  147 (155)
Q Consensus       139 ~L~~~g~~~  147 (155)
                      +|+++|+++
T Consensus       203 ~Ll~~ga~~  211 (260)
T 3jxi_A          203 LLLIKCAKL  211 (260)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHhCccc
Confidence            999999998

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.96  E-value=5.4e-28  Score=162.87  Aligned_cols=130  Identities=25%  Similarity=0.374  Sum_probs=121.4

Q ss_pred             cccHHHHHHHHHhCCHHHHHHHHHcCCCC------CCCCCCCccHHHHHHhC---CCHHHHHHHHhcCCCCCCCCCCCCC
Q 031662           20 PENIDALLAAARYDDIEDVISLASAGVPL------DSKDSQGRTALHMASAN---GHLGIVEYLIGRGVDINASNEEKNT   90 (155)
Q Consensus        20 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~------~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~t   90 (155)
                      ....++|+.|++.|+++.++.+++.|.++      +..+..|.||||+|+..   ++.+++++|+++|++++.+|..|.|
T Consensus       128 ~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~T  207 (278)
T 1dcq_A          128 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGST  207 (278)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCC
T ss_pred             chhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCC
Confidence            34567899999999999999999999884      44578899999999999   8999999999999999999999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhccc
Q 031662           91 PLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLEL  149 (155)
Q Consensus        91 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~  149 (155)
                      |||+|+..|+.+++++|+++|++++.+|..|+|||++|+..|+.+++++|+++|++..-
T Consensus       208 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~  266 (278)
T 1dcq_A          208 ALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN  266 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999987543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=3.6e-29  Score=167.99  Aligned_cols=131  Identities=21%  Similarity=0.263  Sum_probs=121.0

Q ss_pred             CCcccHHHHHHHHHh---CCHHHHHHHHHcCCCC-------C----CCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCC
Q 031662           18 SSPENIDALLAAARY---DDIEDVISLASAGVPL-------D----SKDSQGRTALHMASANGHLGIVEYLIGRGVDINA   83 (155)
Q Consensus        18 ~~~~~~~~l~~A~~~---~~~~~v~~ll~~~~~~-------~----~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~   83 (155)
                      .+..|.||||+|+..   |+.+++++|++.|++.       +    ..+..|.||||+|+..++.+++++|+++|++++.
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~  129 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA  129 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc
Confidence            467899999999987   9999999999987542       2    2566899999999999999999999999999999


Q ss_pred             CCC--------------CCCCHHHHHHhcCcHHHHHHHHH---cCCCCcccCCCCCCHHHHHHHCCC---------HHHH
Q 031662           84 SNE--------------EKNTPLHYACLNGHTEVAKKLVL---SGANISVLNSHEQTPIDEALSRGK---------MDII  137 (155)
Q Consensus        84 ~~~--------------~~~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~  137 (155)
                      ++.              .|.||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..|+         .+++
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v  209 (273)
T 2pnn_A          130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY  209 (273)
T ss_dssp             CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHH
Confidence            987              79999999999999999999999   999999999999999999999988         8999


Q ss_pred             HHHHHHHhhcc
Q 031662          138 DAINTAVAQLE  148 (155)
Q Consensus       138 ~~L~~~g~~~~  148 (155)
                      ++|+++|++++
T Consensus       210 ~~Ll~~ga~~n  220 (273)
T 2pnn_A          210 NEILILGAKLH  220 (273)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHhhhhcc
Confidence            99999999986

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.96  E-value=4e-28  Score=165.14  Aligned_cols=128  Identities=23%  Similarity=0.318  Sum_probs=121.5

Q ss_pred             cccHHHHHHHHHhCCHHHHHHHHHcCCCCCC------CCCCCccHHHHHHhC---CCHHHHHHHHhcCCCCCCCCCCCCC
Q 031662           20 PENIDALLAAARYDDIEDVISLASAGVPLDS------KDSQGRTALHMASAN---GHLGIVEYLIGRGVDINASNEEKNT   90 (155)
Q Consensus        20 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~------~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~t   90 (155)
                      ....++|+.|+..|+++.++++++.+.+++.      .+..|.||||+|+..   ++.+++++|+++|++++.+|..|.|
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~T  228 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT  228 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCC
T ss_pred             CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCC
Confidence            3456889999999999999999999999987      688899999999997   8899999999999999999999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhc
Q 031662           91 PLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQL  147 (155)
Q Consensus        91 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~  147 (155)
                      |||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.+++++|+++|++.
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~  285 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT  285 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999999999984

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=6.2e-28  Score=166.46  Aligned_cols=134  Identities=29%  Similarity=0.456  Sum_probs=126.8

Q ss_pred             CCcccHHHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Q 031662           18 SSPENIDALLAAARYDDIEDVISLASA-GVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYAC   96 (155)
Q Consensus        18 ~~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~   96 (155)
                      .+..+.++|+.|++.|+.+.++.++.. +.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+
T Consensus        20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   99 (351)
T 3utm_A           20 TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC   99 (351)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             eccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence            345788999999999999999998886 7888999999999999999999999999999999999999999999999999


Q ss_pred             hcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           97 LNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        97 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      ..|+.+++++|+++|++++.++..|.|||++|+..|+.+++++|+++|++++..+
T Consensus       100 ~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  154 (351)
T 3utm_A          100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN  154 (351)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc
Confidence            9999999999999999999999999999999999999999999999999987654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=1.2e-28  Score=172.25  Aligned_cols=139  Identities=22%  Similarity=0.253  Sum_probs=72.8

Q ss_pred             CCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCH-----------------------
Q 031662           12 TQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHL-----------------------   68 (155)
Q Consensus        12 ~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~-----------------------   68 (155)
                      +.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.                       
T Consensus       156 ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g  235 (373)
T 2fo1_E          156 GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG  235 (373)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred             CCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCC
Confidence            334444445555555555555555555555555555554444444444444444433                       


Q ss_pred             ----------------HHHHHHHhcCCCCCC--------CCCCCCCHHHHHHhcCcHHHHHHHHHcC-CCCcccCCCCCC
Q 031662           69 ----------------GIVEYLIGRGVDINA--------SNEEKNTPLHYACLNGHTEVAKKLVLSG-ANISVLNSHEQT  123 (155)
Q Consensus        69 ----------------~~~~~ll~~~~~~~~--------~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t  123 (155)
                                      +++++|+++|++++.        ++..|.||||+|+..|+.+++++|++.+ ++++.+|..|+|
T Consensus       236 ~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~T  315 (373)
T 2fo1_E          236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT  315 (373)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred             CCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCC
Confidence                            344444444444433        3334555555555555555555555543 555555555566


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHhhcccC
Q 031662          124 PIDEALSRGKMDIIDAINTAVAQLELG  150 (155)
Q Consensus       124 ~l~~a~~~~~~~~~~~L~~~g~~~~~~  150 (155)
                      |||+|+..|+.+++++|+++|++++..
T Consensus       316 pL~~A~~~g~~~iv~~Ll~~gad~~~~  342 (373)
T 2fo1_E          316 PIMLAAQEGRIEVVMYLIQQGASVEAV  342 (373)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSSCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccCC
Confidence            666666666666666666655555543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=4.3e-28  Score=159.37  Aligned_cols=127  Identities=26%  Similarity=0.414  Sum_probs=64.8

Q ss_pred             cHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCc-
Q 031662           22 NIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH-  100 (155)
Q Consensus        22 ~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~-  100 (155)
                      +.|||+.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+|+|+..++ 
T Consensus        76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~  155 (240)
T 3eu9_A           76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHS  155 (240)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred             CCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCh
Confidence            4455555555555555555555555555555555555555555555555555555555555555444444444443333 


Q ss_pred             HHHHHHHHHcCCCCcccCC-CCCCHHHHHHHCCCHHHHHHHHHHHhhcc
Q 031662          101 TEVAKKLVLSGANISVLNS-HEQTPIDEALSRGKMDIIDAINTAVAQLE  148 (155)
Q Consensus       101 ~~~~~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  148 (155)
                      .+++++|++.|++++..+. .|.|||++|+..|+.+++++|+++|++++
T Consensus       156 ~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  204 (240)
T 3eu9_A          156 VDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD  204 (240)
T ss_dssp             STTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            3444444444444444443 44444444444444444444444444443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=2.5e-28  Score=170.54  Aligned_cols=114  Identities=18%  Similarity=0.233  Sum_probs=105.3

Q ss_pred             HHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcC---C
Q 031662           36 EDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG---A  112 (155)
Q Consensus        36 ~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~---~  112 (155)
                      ..++.+++.|.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.+   +
T Consensus       147 ~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~  226 (373)
T 2fo1_E          147 HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG  226 (373)
T ss_dssp             HHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCcccc
Confidence            3467889999999999999999999999999999999999999999999999999999999999999999999887   7


Q ss_pred             CCcccCCCCCCHHHHHHHCC---CHHHHHHHHHHHhhccc
Q 031662          113 NISVLNSHEQTPIDEALSRG---KMDIIDAINTAVAQLEL  149 (155)
Q Consensus       113 ~~~~~~~~~~t~l~~a~~~~---~~~~~~~L~~~g~~~~~  149 (155)
                      +++..+..|.|||++|+..+   +.+++++|+++|++++.
T Consensus       227 ~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~  266 (373)
T 2fo1_E          227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY  266 (373)
T ss_dssp             TTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC
T ss_pred             ChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccc
Confidence            88888999999999999887   78999999999988875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.96  E-value=9e-28  Score=167.08  Aligned_cols=128  Identities=23%  Similarity=0.331  Sum_probs=121.1

Q ss_pred             CcccHHHHHHHHHh-CCHHHHHHHHHcCCCCCCCC--CCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q 031662           19 SPENIDALLAAARY-DDIEDVISLASAGVPLDSKD--SQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYA   95 (155)
Q Consensus        19 ~~~~~~~l~~A~~~-~~~~~v~~ll~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a   95 (155)
                      ...+.++||.|+.. ++++++++|++.|++++..+  ..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            34566899999999 99999999999999999888  7899999999999999999999999999999999999999999


Q ss_pred             HhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhh
Q 031662           96 CLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQ  146 (155)
Q Consensus        96 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~  146 (155)
                      +..|+.+++++|+++|++++.+|..|.|||++|+..++.+++++|+..+..
T Consensus       276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999999998743

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=2e-27  Score=156.12  Aligned_cols=133  Identities=23%  Similarity=0.346  Sum_probs=88.5

Q ss_pred             CCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCC-CCCCCHHHHHH
Q 031662           18 SSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN-EEKNTPLHYAC   96 (155)
Q Consensus        18 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~a~   96 (155)
                      .+..+.++|+.|++.|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|++.+.+++..+ ..+.|||++|+
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~   84 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT   84 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHH
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHH
Confidence            34555666677777777777777777666666666666677777777777777777776666665433 33666777777


Q ss_pred             hcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccC
Q 031662           97 LNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELG  150 (155)
Q Consensus        97 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~  150 (155)
                      ..++.+++++|++.|++++.++..|.|||++|+..|+.+++++|+++|++++..
T Consensus        85 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~  138 (240)
T 3eu9_A           85 RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM  138 (240)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcccc
Confidence            777777777777666666666666667777777766777777777666666543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.95  E-value=3e-27  Score=134.64  Aligned_cols=92  Identities=39%  Similarity=0.659  Sum_probs=75.0

Q ss_pred             CccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCH
Q 031662           55 GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKM  134 (155)
Q Consensus        55 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  134 (155)
                      |+||||+|+..++.+++++|++.|++++.+|..|.||||+|+..++.+++++|+++|++++.+|..|+|||++|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            67788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhh
Q 031662          135 DIIDAINTAVAQ  146 (155)
Q Consensus       135 ~~~~~L~~~g~~  146 (155)
                      +++++|+++|++
T Consensus        82 ~~~~~Ll~~ga~   93 (93)
T 1n0q_A           82 EVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            888888887764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.95  E-value=3.7e-26  Score=157.45  Aligned_cols=132  Identities=24%  Similarity=0.320  Sum_probs=125.8

Q ss_pred             cccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC-CccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Q 031662           20 PENIDALLAAARYDDIEDVISLASAGVPLDSKDSQ-GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN   98 (155)
Q Consensus        20 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~   98 (155)
                      ..+.|+|+.|++.|++++|++|+++|+++|.++.. |+||||+|+..++.+++++|+++|++++.++..+.++++.++..
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence            46789999999999999999999999999988764 89999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           99 GHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        99 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      +...+...+++.+++++..+..|.||+++|+..|+.+++++|+++|++++...
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~  155 (337)
T 4g8k_A          103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR  155 (337)
T ss_dssp             TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhh
Confidence            99999999999999999999999999999999999999999999999987643

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=8.1e-28  Score=153.25  Aligned_cols=130  Identities=22%  Similarity=0.228  Sum_probs=115.6

Q ss_pred             ccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCC-CCCccHHHHHHhCCCH----HHHHHHHhcCCCCCCCCCCCCCHHHHH
Q 031662           21 ENIDALLAAARYDDIEDVISLASAGVPLDSKD-SQGRTALHMASANGHL----GIVEYLIGRGVDINASNEEKNTPLHYA   95 (155)
Q Consensus        21 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~-~~~~~~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~t~l~~a   95 (155)
                      .++++|+.|++.|+++.++.++..+.+  ..+ ..|+||||+|+..++.    +++++|+++|++++.++..|+||||+|
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred             ccccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            345679999999999999999988753  445 6699999999999975    589999999999999999999999999


Q ss_pred             HhcCc------HHHHHHHHHcCCCCcccCCCCC-CHHHHHHHCCC-----HHHHHHHHH-HHhhcccCCC
Q 031662           96 CLNGH------TEVAKKLVLSGANISVLNSHEQ-TPIDEALSRGK-----MDIIDAINT-AVAQLELGGF  152 (155)
Q Consensus        96 ~~~~~------~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a~~~~~-----~~~~~~L~~-~g~~~~~~~~  152 (155)
                      +..++      .+++++|+++|++++.+|..|+ ||||+|+..+.     .+++++|++ +|++++..+.
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~  152 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK  152 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCT
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCC
Confidence            99887      5889999999999999999999 99999999543     569999999 9999987764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.94  E-value=3.4e-26  Score=130.28  Aligned_cols=93  Identities=44%  Similarity=0.643  Sum_probs=88.7

Q ss_pred             ccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCc
Q 031662           21 ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH  100 (155)
Q Consensus        21 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~  100 (155)
                      .|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 031662          101 TEVAKKLVLSGAN  113 (155)
Q Consensus       101 ~~~~~~Ll~~~~~  113 (155)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999874

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=5.6e-26  Score=137.97  Aligned_cols=107  Identities=30%  Similarity=0.473  Sum_probs=99.6

Q ss_pred             CCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCH
Q 031662           45 GVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTP  124 (155)
Q Consensus        45 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~  124 (155)
                      |.++ .++..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.++..|+||
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            3455 578889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662          125 IDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       125 l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      ||+|+..|+.+++++|+++|++++..+.
T Consensus        80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  107 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLLSYGASRNAVNI  107 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999999987654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.94  E-value=1.2e-26  Score=136.94  Aligned_cols=108  Identities=34%  Similarity=0.511  Sum_probs=86.4

Q ss_pred             CCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Q 031662           18 SSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACL   97 (155)
Q Consensus        18 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~   97 (155)
                      .+..|.||||+|+..|+.+++++|++.+.+++..+..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            45677788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHH
Q 031662           98 NGHTEVAKKLVLSGANISVLNSHEQTPI  125 (155)
Q Consensus        98 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l  125 (155)
                      .++.+++++|+++|++++.++..+.+|-
T Consensus        85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            8888888888888888888877777763

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=4.7e-26  Score=138.21  Aligned_cols=107  Identities=24%  Similarity=0.352  Sum_probs=102.1

Q ss_pred             CCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCC-CCC
Q 031662           45 GVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSH-EQT  123 (155)
Q Consensus        45 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~~t  123 (155)
                      +++++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+. ++.+++++|+++|++++.++.. |+|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            46788899999999999999999999999999999999999999999999999 9999999999999999999999 999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662          124 PIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       124 ~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      |||+|+..|+.+++++|+++|++++..+.
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~  109 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGARLDVCDA  109 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCCCCCCSS
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCC
Confidence            99999999999999999999999887654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.93  E-value=5.6e-26  Score=134.09  Aligned_cols=104  Identities=33%  Similarity=0.526  Sum_probs=98.8

Q ss_pred             CCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Q 031662           50 SKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEAL  129 (155)
Q Consensus        50 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~  129 (155)
                      .+|..|.|+||+|+..++.+++++|++.|++++.+|..|.||||+|+..++.+++++|+++|++++.++..|+|||++|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCHHHHHHHHHHHhhcccCCCc
Q 031662          130 SRGKMDIIDAINTAVAQLELGGFT  153 (155)
Q Consensus       130 ~~~~~~~~~~L~~~g~~~~~~~~~  153 (155)
                      ..++.+++++|+++|++++..+..
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n~~~~~  107 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVNARSWG  107 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHHHHSCC
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCcc
Confidence            999999999999999999866543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=3.1e-26  Score=142.03  Aligned_cols=118  Identities=15%  Similarity=0.144  Sum_probs=94.6

Q ss_pred             ccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCcc-HHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC
Q 031662           10 NRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRT-ALHMASANGHLGIVEYLIGRGVDINASNEEK   88 (155)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~-~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~   88 (155)
                      +.+.++...+..|.||||+|+ .|+.+++++|++.|++++.++..|.| |||+|+..++.+++++|+++|++++.++..|
T Consensus        33 ~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g  111 (156)
T 1bi7_B           33 EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG  111 (156)
T ss_dssp             TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTC
T ss_pred             HcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCC
Confidence            345556667788999999986 99999999999999999999999999 9999999999999999999999999999999


Q ss_pred             CCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Q 031662           89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA  128 (155)
Q Consensus        89 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  128 (155)
                      .||||+|+..++.+++++|+++|++++.++..|.||.+-+
T Consensus       112 ~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          112 RLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             CCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            9999999999999999999999999999999999997633

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=4.4e-25  Score=131.70  Aligned_cols=102  Identities=28%  Similarity=0.396  Sum_probs=94.7

Q ss_pred             CCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Q 031662           51 KDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALS  130 (155)
Q Consensus        51 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  130 (155)
                      .+..+.++||+|+..++.+++++|++.+.+++.++..|.||||+|+..++.+++++|++.|++++.+|..|+||||+|+.
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            35668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhcccCCC
Q 031662          131 RGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       131 ~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      .++.+++++|+++|++++..+.
T Consensus        83 ~~~~~~v~~Ll~~ga~~~~~~~  104 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADKTVKGP  104 (123)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cCCHHHHHHHHHcCCCCCCcCC
Confidence            9999999999999999887654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=2.2e-25  Score=151.65  Aligned_cols=111  Identities=23%  Similarity=0.183  Sum_probs=98.4

Q ss_pred             CCcccHHHHHHHHHh---CCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q 031662           18 SSPENIDALLAAARY---DDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY   94 (155)
Q Consensus        18 ~~~~~~~~l~~A~~~---~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~   94 (155)
                      .+..|.||||+|+..   ++++++++|++.|++++.+|..|.||||+|+..++.+++++|+++|++++.+|..|.|||++
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~  265 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI  265 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHH
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            467899999999997   89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCH
Q 031662           95 ACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKM  134 (155)
Q Consensus        95 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  134 (155)
                      |+..++.+++++|++.|++      .|.||||+|+..|+.
T Consensus       266 A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          266 ARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            9999999999999998765      578999999998764

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.92  E-value=3.7e-26  Score=159.43  Aligned_cols=126  Identities=17%  Similarity=0.141  Sum_probs=103.8

Q ss_pred             cccHHHHHHHHHhCCHHHHHHHHHcCCCC---CCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCC---CCCCCCCCCHHH
Q 031662           20 PENIDALLAAARYDDIEDVISLASAGVPL---DSKDSQGRTALHMASANGHLGIVEYLIGRGVDI---NASNEEKNTPLH   93 (155)
Q Consensus        20 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~---~~~~~~~~t~l~   93 (155)
                      ..+.||||.|++.|+.+++++|++.+...   +..+..+.||||+|+..|+.+++++|+++|+++   +..+.. .||||
T Consensus        90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh  168 (376)
T 2aja_A           90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFR  168 (376)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHH
T ss_pred             CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHH
Confidence            34569999999999999999999998732   233445788999999999999999999999752   222223 89999


Q ss_pred             HHHhcCcHHHHHHHHHcCCCCcc--cCCCCCCHHHHHH-HCCCHHHHHHHHHHHhh
Q 031662           94 YACLNGHTEVAKKLVLSGANISV--LNSHEQTPIDEAL-SRGKMDIIDAINTAVAQ  146 (155)
Q Consensus        94 ~a~~~~~~~~~~~Ll~~~~~~~~--~~~~~~t~l~~a~-~~~~~~~~~~L~~~g~~  146 (155)
                      +|+..|+.+++++|+++|++++.  .+..|.|||++|+ ..|+.+++++|++.|++
T Consensus       169 ~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~  224 (376)
T 2aja_A          169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  224 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             HHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc
Confidence            99999999999999999999887  8888999999999 99999999999988764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.91  E-value=5.5e-24  Score=139.65  Aligned_cols=113  Identities=24%  Similarity=0.178  Sum_probs=97.5

Q ss_pred             HHHHHHcCCCCCCC---CCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCC
Q 031662           38 VISLASAGVPLDSK---DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANI  114 (155)
Q Consensus        38 v~~ll~~~~~~~~~---~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~  114 (155)
                      ++.|++++.+++..   +..+.|+||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            45678888776544   345678899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccC
Q 031662          115 SVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELG  150 (155)
Q Consensus       115 ~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~  150 (155)
                      +.+|..|+|||++|+..|+.+++++|+++|++++..
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~  116 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT  116 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence            999999999999999999999999999999999765

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=5.4e-24  Score=129.10  Aligned_cols=102  Identities=26%  Similarity=0.346  Sum_probs=94.9

Q ss_pred             ccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCC
Q 031662           10 NRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKN   89 (155)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~   89 (155)
                      +.+.+.+..+..|.||||+|+..++.+++++|++.+++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.
T Consensus        35 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  114 (136)
T 2jab_A           35 ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGK  114 (136)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCC
Confidence            34455566778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHhcCcHHHHHHHHHcC
Q 031662           90 TPLHYACLNGHTEVAKKLVLSG  111 (155)
Q Consensus        90 t~l~~a~~~~~~~~~~~Ll~~~  111 (155)
                      |||++|+..++.+++++|+++|
T Consensus       115 tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          115 TAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.91  E-value=2e-24  Score=148.51  Aligned_cols=122  Identities=14%  Similarity=0.065  Sum_probs=110.0

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCc--
Q 031662           24 DALLAAARYDDIEDVISLASAGVPLDS-KDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH--  100 (155)
Q Consensus        24 ~~l~~A~~~~~~~~v~~ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~--  100 (155)
                      ..+|.|+..+..+++++|++.|.+++. ++..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+  
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~  178 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY  178 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHH
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccc
Confidence            345788888888999999999999999 89999999999999999999999999999999999999999999999998  


Q ss_pred             -HHHHHHHHHcC-CCCcccCCCCCCHHHHHHH----CCCHHHHHHHHHHHh
Q 031662          101 -TEVAKKLVLSG-ANISVLNSHEQTPIDEALS----RGKMDIIDAINTAVA  145 (155)
Q Consensus       101 -~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~----~~~~~~~~~L~~~g~  145 (155)
                       .++++.|++.+ ++++.++..|+||||+|+.    .|+.+++++|++.++
T Consensus       179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~  229 (327)
T 1sw6_A          179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILM  229 (327)
T ss_dssp             HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHH
Confidence             67888888876 7799999999999999999    999999999999964

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=2.1e-23  Score=124.43  Aligned_cols=103  Identities=40%  Similarity=0.579  Sum_probs=96.5

Q ss_pred             cCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCC
Q 031662           11 RTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNT   90 (155)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t   90 (155)
                      .+......+..+.||||.|+..++.+++++|++.+.+++.++..|.||||+|+..++.+++++|+++|++++.++..|.|
T Consensus        24 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  103 (126)
T 1n0r_A           24 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT  103 (126)
T ss_dssp             HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCC
Confidence            34455566778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCC
Q 031662           91 PLHYACLNGHTEVAKKLVLSGAN  113 (155)
Q Consensus        91 ~l~~a~~~~~~~~~~~Ll~~~~~  113 (155)
                      |+++|+..++.+++++|+++|++
T Consensus       104 ~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A          104 PLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999999999999999875

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.90  E-value=1.7e-23  Score=132.87  Aligned_cols=115  Identities=29%  Similarity=0.309  Sum_probs=104.2

Q ss_pred             CCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCC-CCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCC
Q 031662           12 TQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKD-SQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNT   90 (155)
Q Consensus        12 ~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t   90 (155)
                      +.+++..+..|.||||+|+..|+.+++++|++.|++++.++ ..|.||||+|+..++.+++++|+++|++++.+|..|.|
T Consensus        66 ~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t  145 (183)
T 3deo_A           66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLT  145 (183)
T ss_dssp             TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCC
T ss_pred             cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCC
Confidence            45566678899999999999999999999999999999888 88999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHH
Q 031662           91 PLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTA  143 (155)
Q Consensus        91 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~  143 (155)
                      ||++|+..++.                 ..+.+++++|+..|+.+++++|.++
T Consensus       146 pl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          146 ALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            99999874322                 4568999999999999999999764

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.90  E-value=4.2e-23  Score=120.91  Aligned_cols=90  Identities=32%  Similarity=0.478  Sum_probs=48.5

Q ss_pred             CCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Q 031662           18 SSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACL   97 (155)
Q Consensus        18 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~   97 (155)
                      .+..+.++||+|+..|+.+++++|++.+++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+.
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~   99 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID   99 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCcHHHHHHH
Q 031662           98 NGHTEVAKKL  107 (155)
Q Consensus        98 ~~~~~~~~~L  107 (155)
                      .++.+++++|
T Consensus       100 ~~~~~~~~~L  109 (110)
T 2zgd_A          100 NGNEDLAEIL  109 (110)
T ss_dssp             HTCHHHHHHH
T ss_pred             cCCHHHHHHh
Confidence            5555555543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.90  E-value=7.7e-26  Score=157.83  Aligned_cols=125  Identities=18%  Similarity=0.147  Sum_probs=109.6

Q ss_pred             CCCcccHHHHHHHHHhCCHHHHHHHHHcCCCC---CCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCC--CCCCCCCH
Q 031662           17 TSSPENIDALLAAARYDDIEDVISLASAGVPL---DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA--SNEEKNTP   91 (155)
Q Consensus        17 ~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~--~~~~~~t~   91 (155)
                      ..+..+.||||+|++.|+.+++++|++.|+++   +..+.. .||||+|+..|+.+++++|+++|++++.  .+..|.||
T Consensus       123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~Tp  201 (376)
T 2aja_A          123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYA  201 (376)
T ss_dssp             --CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCH
Confidence            34567889999999999999999999999752   222233 8999999999999999999999999877  78889999


Q ss_pred             HHHHH-hcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhccc
Q 031662           92 LHYAC-LNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLEL  149 (155)
Q Consensus        92 l~~a~-~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~  149 (155)
                      ||+|+ ..|+.+++++|++.|+       .+.||+++|+..|+.+++++|+++|++++.
T Consensus       202 L~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~  253 (376)
T 2aja_A          202 FRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKE  253 (376)
T ss_dssp             HHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCccccc
Confidence            99999 9999999999998763       378999999999999999999999998753

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=2.5e-23  Score=135.72  Aligned_cols=101  Identities=22%  Similarity=0.345  Sum_probs=96.0

Q ss_pred             CCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHH
Q 031662           52 DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLS-GANISVLNSHEQTPIDEALS  130 (155)
Q Consensus        52 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~  130 (155)
                      +..|.|+||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++. |++++.++..|+||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            34568999999999999999999999999999999999999999999999999999998 99999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhcccCCC
Q 031662          131 RGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       131 ~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      .|+.+++++|+++|++++..+.
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~  171 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNI  171 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCT
T ss_pred             cCCHHHHHHHHHcCCCCccccC
Confidence            9999999999999999987654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.89  E-value=2.6e-22  Score=117.51  Aligned_cols=92  Identities=29%  Similarity=0.448  Sum_probs=86.1

Q ss_pred             CCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Q 031662           49 DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA  128 (155)
Q Consensus        49 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  128 (155)
                      ...+..|.|+||+|+..++.+++++|++.|++++.+|..|.||||+|+..++.+++++|+++|++++.++..|+|||++|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            34677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCHHHHHHH
Q 031662          129 LSRGKMDIIDAI  140 (155)
Q Consensus       129 ~~~~~~~~~~~L  140 (155)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            999999999987

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=9.7e-23  Score=134.85  Aligned_cols=99  Identities=18%  Similarity=0.213  Sum_probs=94.0

Q ss_pred             CCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHC
Q 031662           53 SQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLN-SHEQTPIDEALSR  131 (155)
Q Consensus        53 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~  131 (155)
                      ..|.||||+|+..++.+++++|++ +++++.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            457899999999999999999999 99999999999999999999999999999999999999988 8899999999999


Q ss_pred             CCHHHHHHHHHHHhhcccCCC
Q 031662          132 GKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       132 ~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      |+.+++++|+++|++++..+.
T Consensus       122 g~~~~v~~Ll~~ga~~~~~d~  142 (244)
T 3ui2_A          122 VRPEVVEALVELGADIEVEDE  142 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCHHHHHHHHHCCCCCCCCCC
Confidence            999999999999999987654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.89  E-value=1.2e-22  Score=141.46  Aligned_cols=138  Identities=22%  Similarity=0.287  Sum_probs=93.4

Q ss_pred             cCCCccCCC--cccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC
Q 031662           11 RTQTTETSS--PENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK   88 (155)
Q Consensus        11 ~~~~~~~~~--~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~   88 (155)
                      .+.+++..+  ..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.+|..|
T Consensus       222 ~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G  301 (368)
T 3jue_A          222 HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG  301 (368)
T ss_dssp             TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCC
Confidence            334444444  788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHhcCcHHHHHHHHHcC---CCCcccCCCCCCHHHHHHHCCC--HHHHHHHHHHHhhcc
Q 031662           89 NTPLHYACLNGHTEVAKKLVLSG---ANISVLNSHEQTPIDEALSRGK--MDIIDAINTAVAQLE  148 (155)
Q Consensus        89 ~t~l~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~~~t~l~~a~~~~~--~~~~~~L~~~g~~~~  148 (155)
                      .||||+|+..++.+++++|++.+   .+....+..+.|+++++.....  .+-.+.|..++.+++
T Consensus       302 ~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~~~~~~~ekl~r~~~~~~  366 (368)
T 3jue_A          302 RDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSRRSHDLH  366 (368)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHC-----------------------------------------
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHhhcCCCHHHHHhcCCCcC
Confidence            99999999999999999999765   3344556677888888776543  344566776666554

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=3.2e-22  Score=134.73  Aligned_cols=99  Identities=23%  Similarity=0.226  Sum_probs=93.6

Q ss_pred             cCCCcccHHHHHHHHHh---CCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q 031662           16 ETSSPENIDALLAAARY---DDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPL   92 (155)
Q Consensus        16 ~~~~~~~~~~l~~A~~~---~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l   92 (155)
                      ...+..|.||||+|+..   ++.+++++|++.|++++.+|..|.||||+|+..++.+++++|+++|++++.+|..|.|||
T Consensus       163 ~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL  242 (278)
T 1dcq_A          163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPL  242 (278)
T ss_dssp             SSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             cccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHH
Confidence            33467799999999999   899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCC
Q 031662           93 HYACLNGHTEVAKKLVLSGANI  114 (155)
Q Consensus        93 ~~a~~~~~~~~~~~Ll~~~~~~  114 (155)
                      |+|+..|+.+++++|+++|++.
T Consensus       243 ~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          243 DIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	155
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-18
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-20
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-16
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-19
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-16
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-17
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-16
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-12
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-14
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-11
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-11
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.004
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	9e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.004
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.004
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	5e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	4e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.002
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	7e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	4e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	6e-05
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.6 bits (239), Expect = 6e-25
 Identities = 31/104 (29%), Positives = 51/104 (49%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  A+    +  V +L   G   +  + +  T LHMA+  GH  + +YL+     +NA 
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
            ++  TPLH A   GHT + K L+ + AN ++  +   TP+  A
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIA 106

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 4e-24
 Identities = 35/80 (43%), Positives = 47/80 (58%)

Query: 57  TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
           T LH+AS  GHL IV+ L+ RG   N SN +  TPLH A   GHTEVAK L+ + A ++ 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 117 LNSHEQTPIDEALSRGKMDI 136
               +QTP+  A   G  ++
Sbjct: 62  KAKDDQTPLHCAARIGHTNM 81

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (195), Expect = 7e-19
 Identities = 34/118 (28%), Positives = 60/118 (50%)

Query: 21  ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
             +  L   A+   +     L   GV +D+    G T LH+AS  G++ +V++L+    D
Sbjct: 263 SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 322

Query: 81  INASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIID 138
           +NA  +   +PLH A   GHT++   L+ +GA+ + ++S   TP+  A   G + + D
Sbjct: 323 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD 380

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 4e-18
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 3/99 (3%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  A+ Y +I+ V  L      +++K   G + LH A+  GH  IV  L+  G   N  
Sbjct: 300 PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 359

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVL---SGANISVLNSH 120
           + +  TPL  A   G+  V   L +     + + V + H
Sbjct: 360 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKH 398

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (186), Expect = 1e-17
 Identities = 30/113 (26%), Positives = 50/113 (44%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA+Y  +     L       ++    G T LH+A  + +L IV+ L+ RG   ++ 
Sbjct: 135 PLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 194

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
                TPLH A      EVA+ L+  G + +  +    TP+  A   G  +++
Sbjct: 195 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 247

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 4e-16
 Identities = 22/91 (24%), Positives = 42/91 (46%)

Query: 45  GVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVA 104
                    +G T LH+A+  G + + E L+ R    NA+ +   TPLH A  + + ++ 
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 105 KKLVLSGANISVLNSHEQTPIDEALSRGKMD 135
           K L+  G +      +  TP+  A  + +++
Sbjct: 182 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE 212

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 2e-15
 Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 33/157 (21%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGR------- 77
            L  AAR    E    L      +++K    +T LH A+  GH  +V+ L+         
Sbjct: 36  PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 95

Query: 78  --------------------------GVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
                                             ++  TPLH A   G   VA+ L+   
Sbjct: 96  TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 155

Query: 112 ANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLE 148
           A+ +    +  TP+  A+    +DI+  +        
Sbjct: 156 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 192

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 4e-13
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 8/140 (5%)

Query: 1   MEQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALH 60
           +E+DA P+         +    +  L  A  +++++ V  L   G    S    G T LH
Sbjct: 152 LERDAHPNA--------AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH 203

Query: 61  MASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSH 120
           +A+    + +   L+  G   NA + +  TPLH A   GH E+   L+   AN ++ N  
Sbjct: 204 IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 263

Query: 121 EQTPIDEALSRGKMDIIDAI 140
             TP+      G + + D +
Sbjct: 264 GLTPLHLVAQEGHVPVADVL 283

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 3e-12
 Identities = 33/113 (29%), Positives = 52/113 (46%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA+ + +E   SL   G   +++  QG T LH+A+  GH  +V  L+ +  + N  
Sbjct: 201 PLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 260

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           N+   TPLH     GH  VA  L+  G  +        TP+  A   G + ++
Sbjct: 261 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 313

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 4e-10
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 90  TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           TPLH A   GH  + K L+  GA+ +V N   +TP+  A   G  ++ 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 49

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 81.7 bits (200), Expect = 5e-20
 Identities = 28/88 (31%), Positives = 43/88 (48%)

Query: 41  LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH 100
           L S  +        G TALH+A+A G+  +++ LI    D+N  + +  TPLH A   G 
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244

Query: 101 TEVAKKLVLSGANISVLNSHEQTPIDEA 128
            E  + LV +  ++  +N   QT  D A
Sbjct: 245 EEACRILVENLCDMEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 71.3 bits (173), Expect = 3e-16
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL  AA     E +  L  A   ++ KD  G T LH A+  G       L+    D+ A 
Sbjct: 202 ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV 261

Query: 85  NEEKNTPLHYACLN--GHTEVAKK 106
           N+   T    A  +  G+ E  +K
Sbjct: 262 NKVGQTAFDVADEDILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.4 bits (150), Expect = 6e-13
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 54  QGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEV 103
                   A ++G    V  L+ RG DIN +N +  T LH AC++ + ++
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDM 88

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.3 bits (129), Expect = 4e-10
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 2   EQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHM 61
           E D +P + + + T+    +     LAA    D E+V+ L   G  ++  +  G TALH 
Sbjct: 21  ETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQ 79

Query: 62  ASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHE 121
           A  + ++ +V++L+  G +IN  + E   PLH A   G+ ++A+ L+  GA++  +NS  
Sbjct: 80  ACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139

Query: 122 QTPIDEALSRGKMD 135
            TP+D A      +
Sbjct: 140 DTPLDIAEEEAMEE 153

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.6 bits (114), Expect = 4e-08
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 87  EKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN 141
           +       AC +G TE   +L+  GA+I+  N    T + +A     +D++  + 
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLV 93

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.5 bits (106), Expect = 6e-07
 Identities = 16/79 (20%), Positives = 31/79 (39%)

Query: 60  HMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNS 119
                       ++L    ++     +   T LH A   G+TEV K L+ +  ++++ + 
Sbjct: 171 KEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY 230

Query: 120 HEQTPIDEALSRGKMDIID 138
              TP+  A   GK +   
Sbjct: 231 DGWTPLHAAAHWGKEEACR 249

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.5 bits (200), Expect = 6e-20
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 41  LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGR-GVDINASNEEKNTPLHYACLNG 99
           L   G  ++ +  +G+T L +A    HLG+V+ L+ +  ++IN ++ +  T L  A    
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264

Query: 100 HTEVAKKLVLSGANI 114
             ++A+ L   GA+ 
Sbjct: 265 LKKIAELLCKRGAST 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 3e-16
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 25  ALLAAARYDDIEDV-ISLASAGVPLDSKDSQGRTALHMASANGHLGIVE----YLIGRGV 79
           AL+ AA    +E + I L   G  +++ D+ GR AL  A  +     VE     L+  G 
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

Query: 80  DINASNEEKNTPLHYACLNGHTEVAKKLVLS-GANISVLNSHEQTPIDEALSRGKMDIID 138
           D+N   E   TPL  A    H  + ++L+      I+  +S  +T +  A+      I +
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 2e-13
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 54  QGRTALHMASANGHLGIVEYLIGRGVDINA-SNEEKNTPLHYACLNGHTEVAKKLVLSGA 112
           +    L  A  N  + +V+ L+  G ++N    E   TPLH A      ++ + L+  GA
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 113 NISVLNSHEQTPIDEALSRGKM 134
           +  +   +  TP   A   G +
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSV 85

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 3e-12
 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 49  DSKDSQGRTALHMASANGHLGIVEYLIGR-GVDINASNEEKNTPLHYACLN----GHTEV 103
           +     G TAL  A+  GH+ +++ L+   G D+NA +      L +A L+        +
Sbjct: 142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI 201

Query: 104 AKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
              L+  GA+++V     +TP+  A+ +  + ++  +
Sbjct: 202 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 4e-11
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 25  ALLAAARYDDIEDVISL-ASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA 83
            L+ A     +  V  L     + ++  DS G+TAL +A       I E L  RG   + 
Sbjct: 222 PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281

Query: 84  SN 85
            +
Sbjct: 282 GD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 2e-10
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 1/112 (0%)

Query: 18  SSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQ-GRTALHMASANGHLGIVEYLIG 76
           ++ E+   L+ A + +D++ V  L   G  ++ ++ + G T LH A       IVE L+ 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 77  RGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
            G D     +   TP   A + G  ++ K  +  GA+++  + +  T   EA
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 112

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 11/124 (8%)

Query: 29  AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDIN------ 82
           AA    ++ +    S G  ++  D  G TA   A+  G +  +++L  RG ++N      
Sbjct: 79  AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK 138

Query: 83  ----ASNEEKNTPLHYACLNGHTEVAKKLVLS-GANISVLNSHEQTPIDEALSRGKMDII 137
                  +   T L  A   GH EV K L+   GA+++  ++  +  +  AL       +
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198

Query: 138 DAIN 141
           +AI 
Sbjct: 199 EAIT 202

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 80.5 bits (197), Expect = 1e-19
 Identities = 17/63 (26%), Positives = 29/63 (46%)

Query: 45  GVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVA 104
           G   D +D  G+T + +A+  G + +V YLI +G  + A +   +T    A  N H  + 
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV 270

Query: 105 KKL 107
              
Sbjct: 271 DIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 72.5 bits (176), Expect = 1e-16
 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 45  GVPLDSKDSQGRTALHMASANGHLGIVEYLIG-RGVDINASNEEKNTPLHYACLNGHTEV 103
               DS+  +GRTALH A+   ++ IV+YL+G +G + +  +E+  TP+  A   G  EV
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236

Query: 104 AKKLVLSGANISVLNSHEQTPIDEALSRGKMDIID 138
              L+  GA++  +++ + T    A +    +I+D
Sbjct: 237 VMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD 271

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.8 bits (151), Expect = 4e-13
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 10/78 (12%)

Query: 57  TALHMA-SANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVL------ 109
           + + +   A G   I E +    V+I        T LH+   N   E ++ L++      
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 110 --SGANISVLNSHEQTPI 125
             +GA+++ ++  E TP+
Sbjct: 61  IAAGADVNAMDCDENTPL 78

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.4 bits (142), Expect = 7e-12
 Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 11/85 (12%)

Query: 27  LAAARYDDIEDVISLASAGV-PLDSKDSQGRTALHMASANGHLGIVEYL--------IGR 77
           L             +    V  +D +    RT LH  ++N      E L        I  
Sbjct: 6   LHTEAAGSYAITEPITRESVNIIDPRH--NRTVLHWIASNSSAEKSEDLIVHEAKECIAA 63

Query: 78  GVDINASNEEKNTPLHYACLNGHTE 102
           G D+NA + ++NTPL  A L     
Sbjct: 64  GADVNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.4 bits (137), Expect = 3e-11
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLI 75
            ++ AA+   IE V+ L   G  +++ D+   TA  +A AN H  IV+   
Sbjct: 224 PIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (178), Expect = 3e-17
 Identities = 22/80 (27%), Positives = 37/80 (46%)

Query: 26  LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
           L+ A   + +  V  L   G  ++++   G +ALH AS  G L +V  L+  G D +  N
Sbjct: 148 LIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN 207

Query: 86  EEKNTPLHYACLNGHTEVAK 105
              +TPL  A      ++ +
Sbjct: 208 CHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 2e-13
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 55  GRTALHMASANGHLGIVEYLIG----RGVDINASNEEKNTPLHYACLNGH 100
           G T LH+A   G+L  V  L+      G +++  N  + TPLH A +   
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL 52

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 4e-13
 Identities = 28/79 (35%), Positives = 42/79 (53%)

Query: 59  LHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLN 118
           L  A  N  L +V+ L+  G ++NA     ++ LH A   G   + + LV SGA+ S+ N
Sbjct: 148 LIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN 207

Query: 119 SHEQTPIDEALSRGKMDII 137
            H  TP+  A SR  +DI+
Sbjct: 208 CHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 7e-09
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 86  EEKNTPLHYACLNGHTEVAKKLV----LSGANISVLNSHEQTPIDEA 128
           E+ +TPLH A + G+     +LV      G  + + N+  QTP+  A
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 3e-06
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 25  ALLAAARYDDIEDVISL----ASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
            L  A    ++  V  L       G  LD  ++  +T LH+A       +V  L+  G  
Sbjct: 6   PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 65

Query: 81  INASNEEKNTPLHYACLNGHTE 102
             A +    T  H AC +    
Sbjct: 66  PMALDRHGQTAAHLACEHRSPT 87

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 1e-16
 Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
            L  AA  +  E  + L   G   D+KD    TA+H A+A G+L ++  L+      N  
Sbjct: 106 PLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ 165

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
           + E NTPLH AC     E AK LV  GA+I + N  E+TP+  A   G   I+
Sbjct: 166 DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLIL 217

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 9e-16
 Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 34/134 (25%)

Query: 26  LLAAARYDDIEDVI-SLASAGVPLDSKDSQGRTALHMASANGHLG--------------- 69
           +   A    +E++  S+ +        D   RTALH A + GH                 
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 70  ------------------IVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
                             IV+ L+G+G  +NA N+   TPLHYA      E+A  L+  G
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 112 ANISVLNSHEQTPI 125
           AN    + +E T +
Sbjct: 127 ANPDAKDHYEATAM 140

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 32  YDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLI 75
            + +E+   L S G  +  ++ + +T L +A   G   I++ ++
Sbjct: 179 EERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMV 221

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 71.8 bits (175), Expect = 3e-16
 Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 5/84 (5%)

Query: 47  PLDSKDSQGRTALHMASANGHLGIVEY---LIGRGVDINASNEEKNTPLHYACLNGHTEV 103
               K  +      +A+  G    ++    L+     +     E       A  NGH  V
Sbjct: 82  DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHV 141

Query: 104 AKKLVLSGA--NISVLNSHEQTPI 125
             +L        ++++ +      
Sbjct: 142 LNRLCELAPTEIMAMIQAENYHAF 165

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 67.2 bits (163), Expect = 2e-14
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 5/95 (5%)

Query: 25  ALLAAARY---DDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDI 81
               AA       ++ +  L ++   +    ++   A  +A+ NGHL ++  L       
Sbjct: 93  ICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 152

Query: 82  NASNEEK--NTPLHYACLNGHTEVAKKLVLSGANI 114
             +  +         A  NGH  V  +L       
Sbjct: 153 IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 187

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 58.8 bits (141), Expect = 1e-11
 Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 12/92 (13%)

Query: 29  AARYDDIEDVISLASAGVPLDSKD-------SQGRTALHMASANGHLGIVEYLIGRG--- 78
             R  ++ D   L++     D                L   +    L  + +L+      
Sbjct: 246 VNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK 305

Query: 79  --VDINASNEEKNTPLHYACLNGHTEVAKKLV 108
                     + N  L  A   G+      L+
Sbjct: 306 ALAPTATIPGDANELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 46.0 bits (108), Expect = 4e-07
 Identities = 11/119 (9%), Positives = 28/119 (23%), Gaps = 15/119 (12%)

Query: 24  DALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA 83
            A +    Y +      +A       ++  +   A  +++ +G   +V            
Sbjct: 225 YAEIHEFEYGEKYVNPFIARHV----NRLKEMHDAFKLSNPDGVFDLVTK------SECL 274

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGA-----NISVLNSHEQTPIDEALSRGKMDII 137
                   L         +  + L+           + +       +  AL  G     
Sbjct: 275 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC 333

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.9 bits (105), Expect = 9e-07
 Identities = 9/104 (8%), Positives = 28/104 (26%), Gaps = 14/104 (13%)

Query: 48  LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHT------ 101
           L +   +    + +        + + L       N + ++  +  H   +          
Sbjct: 39  LMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAA 98

Query: 102 --------EVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
                   +    L+ S   + V+ +        A   G + ++
Sbjct: 99  ITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVL 142

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 15/124 (12%), Positives = 29/124 (23%), Gaps = 14/124 (11%)

Query: 19  SPENIDALLAAARYDDIEDVISLASAGVPLDS---KDSQGRTALHMASANGHLGIVEYLI 75
             EN  A   AA    +  +  L        +   +          A   GH  ++ +L+
Sbjct: 158 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL 217

Query: 76  GRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMD 135
              V +            +    G   V   +                    +   G  D
Sbjct: 218 DCPVML-------AYAEIHEFEYGEKYVNPFIARHVNR----LKEMHDAFKLSNPDGVFD 266

Query: 136 IIDA 139
           ++  
Sbjct: 267 LVTK 270

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.1 bits (170), Expect = 6e-16
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 51  KDSQGRTALHMASANGHLGIVEYLIGRGVD---INASNEEKNTPLHYACLNGHTEVAKKL 107
               G TALH+A  + H   +++L+G       ++  N+   T LH A + G     +KL
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 108 VLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
             +GA + V      T +  A           +
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVL 97

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.0 bits (154), Expect = 1e-13
 Identities = 19/57 (33%), Positives = 26/57 (45%)

Query: 56  RTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGA 112
           RT LH+A       ++E L+  G D  A      TPL  A L  +  +A+ L   GA
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (131), Expect = 2e-10
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 25  ALLAAARYDDIEDVISLASAGVP---LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDI 81
           AL  A  +     +  L         LD ++  G+TALH+A+  G    VE L   G  +
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71

Query: 82  NASNEEKNTPLHYACLNGHTEVAKKLVLSGAN 113
             +    +T LH AC       A  L+    +
Sbjct: 72  LVAERGGHTALHLACRVRAHTCACVLLQPRPS 103

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (120), Expect = 7e-09
 Identities = 10/49 (20%), Positives = 15/49 (30%)

Query: 30  ARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRG 78
                   +  L  AG    ++   GRT L  A    +  +   L   G
Sbjct: 200 VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 4e-08
 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 1/115 (0%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLI-GRGVDINA 83
           A + +    + E+        + L++++  G T LH+A  +    +V  L          
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187

Query: 84  SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIID 138
                 TPLH A       V + L+ +GA+ +      +TP+  AL R    +  
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.4 bits (163), Expect = 1e-14
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 3/104 (2%)

Query: 28  AAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGR---GVDINAS 84
           AA  Y DI     +     P+ S  ++  +  +  +      I+E L  +      +NA 
Sbjct: 196 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ 255

Query: 85  NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
           +   +T L+ A   G+  +   L+  GA+  + N     P+D  
Sbjct: 256 DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.2 bits (160), Expect = 2e-14
 Identities = 16/73 (21%), Positives = 35/73 (47%)

Query: 23  IDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDIN 82
            +      +   +E++         L+++DS G T L++A+  G++ IV+ L+  G D  
Sbjct: 227 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 286

Query: 83  ASNEEKNTPLHYA 95
            +N+    P+ + 
Sbjct: 287 IANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.8 bits (146), Expect = 2e-12
 Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 5/132 (3%)

Query: 14  TTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSK-DSQGRTALHMASANGHLGIVE 72
                   N      +      E   +  +  + L+   D  G T LH  ++  +L +V+
Sbjct: 65  RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVK 124

Query: 73  YLIGRGVDINASNEEKNTPLHYACLNGH----TEVAKKLVLSGANISVLNSHEQTPIDEA 128
           +L+  G +    +    + L  A  + +          L      + + +S  +T +   
Sbjct: 125 HLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHI 184

Query: 129 LSRGKMDIIDAI 140
           +    M    A 
Sbjct: 185 IITSGMTGCSAA 196

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.0 bits (157), Expect = 1e-14
 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 9/132 (6%)

Query: 23  IDALLAAARYDDIEDVISLASAGV------PLDSKDSQGRTALHMASAN---GHLGIVEY 73
           + +L  A +  DI  ++   + GV      PL +      TALH+A  +     L IV++
Sbjct: 7   LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDF 66

Query: 74  LIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGK 133
           L+    +++    + +T LHY CL  + E  K L+   A+I + N   +TP+D A     
Sbjct: 67  LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH 126

Query: 134 MDIIDAINTAVA 145
               + +  A++
Sbjct: 127 EHCEELLTQALS 138

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 63.3 bits (152), Expect = 1e-13
 Identities = 29/101 (28%), Positives = 53/101 (52%)

Query: 41  LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH 100
           L +A   +++ D+ G+TALH A+A  +   V  L+    + +A +++  TPL  A   G 
Sbjct: 109 LITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGS 168

Query: 101 TEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN 141
            E +K L+ + AN  + +  ++ P D A  R   DI+  ++
Sbjct: 169 YEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.3 bits (134), Expect = 5e-11
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 70  IVEYLIGRGVDINAS-NEEKNTPLHYACLNGHTEVAKKL 107
           ++  L+ +G ++NA+ ++   T LH A      + AK+L
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 2e-08
 Identities = 10/43 (23%), Positives = 13/43 (30%)

Query: 32  YDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYL 74
               E   +L       +  D   R    +AS   H  IV  L
Sbjct: 166 EGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.2 bits (100), Expect = 2e-06
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 36  EDVISLASAGVPLDSK-DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY 94
           + +  L + G  L++  D  G T+LH+A+        + L+  G D N+ +    TPLH 
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 95  ACLNGH 100
           A     
Sbjct: 63  AVAADA 68

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.1 bits (149), Expect = 4e-13
 Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 57  TALHMASANGHLGIVEYLI-GRGVDINASNEEKNTPLHYACLNGHT 101
             LH A        V+ L+  +   +   +++   PLH++      
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 5e-11
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 51  KDSQGRTALHMASANGHLGIVEYLIGR-GVDINASNEEKNTPLHYACLNGHTEVAKKLVL 109
           +D QG T L  A A GH      L+ + G + +  + +       A    + +V K  + 
Sbjct: 168 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLN 224

Query: 110 SGAN 113
           +  +
Sbjct: 225 NVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 2e-09
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 89  NTPLHYACLNGHTEVAKKLVLS-GANISVLNSHEQTPIDEALSRGKM 134
           N PLH AC+       ++L+ S  + +   +   + P+  ++S    
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 2e-09
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 32  YDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD-INASNEEKNT 90
               E    L   G  +  KD   +  LH A++ G L ++E L G G   +N  +++  T
Sbjct: 115 KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 174

Query: 91  PLHYACLNGHTEVAKKLVLS-GANISVLNSHEQTPIDEALSR 131
           PL +A   GH + A  LV   GA   ++++      D AL+ 
Sbjct: 175 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 216

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 1e-07
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 25  ALLAAARYDDIEDVISL-ASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA 83
            L  A   ++   V  L  S    L  KD  GR  LH + +     I  +L+ +  ++N 
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 84  SNEEKNTPLHYACLNGH 100
            +   ++      +   
Sbjct: 63  DDYPDDSGWTPFHIACS 79

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 5e-06
 Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 30  ARYDDIEDVISL-ASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
                 +  + L    G   D  D++G  A  +A    +  + ++ +   VD
Sbjct: 180 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (140), Expect = 8e-12
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 55  GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
           GRTALH+A    +  +V  L+  G D+N    +  +P         T + ++L       
Sbjct: 145 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 204

Query: 115 --SVLNSHEQTPID 126
              +  S ++   D
Sbjct: 205 LQMLPESEDEESYD 218

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (136), Expect = 3e-11
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 55  GRTALHMASANGHLG----IVEYLIGRGVDINASNEEKNTPLHYACLNGH 100
           G + LH+A  +        ++  + G    +N  N  + TPLH A +   
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 8e-09
 Identities = 11/65 (16%), Positives = 20/65 (30%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
           AL  A    + + V  L   G  ++    QG +   +        I + L    ++    
Sbjct: 148 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQM 207

Query: 85  NEEKN 89
             E  
Sbjct: 208 LPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 7e-07
 Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 89  NTPLHYACLNGHTEVAKKLV----LSGANISVLNSHEQTPIDEA 128
           ++ LH A ++    +  +++       A ++  N+ +QTP+  A
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-06
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)

Query: 56  RTALHMASANGHLGIVEYLIGRGVDI-NASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
            T LH+AS +G+LGIVE L+  G D+         T LH A    + ++   L+  GA++
Sbjct: 112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 171

Query: 115 SVLNSHEQTPIDEALSRGKMDIIDAINTAVAQ 146
           + +     +P      R    I   +     +
Sbjct: 172 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (76), Expect = 0.004
 Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 4/47 (8%)

Query: 25 ALLAAARYDDIEDVI----SLASAGVPLDSKDSQGRTALHMASANGH 67
           L  A  +++    +     +      L+ +++  +T LH+A     
Sbjct: 5  FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.5 bits (129), Expect = 1e-10
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 45  GVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVA 104
           G  +++KD    TALH A+ + H  +VE LI  G D++  ++   T    +  NG+ ++A
Sbjct: 90  GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA 149

Query: 105 KKL 107
           + L
Sbjct: 150 EIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (96), Expect = 5e-06
 Identities = 7/44 (15%), Positives = 10/44 (22%)

Query: 57  TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH 100
             L  A+  G    V  L+  G          +     A     
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHF 47

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (94), Expect = 9e-06
 Identities = 6/32 (18%), Positives = 12/32 (37%)

Query: 87  EKNTPLHYACLNGHTEVAKKLVLSGANISVLN 118
           +    L  A   G  +  + L+ +GA  +   
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDW 32

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (88), Expect = 6e-05
 Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 34/147 (23%)

Query: 25  ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLG--------------- 69
            LL AAR    ++V  L + G P    D  G + LH+A+  GH                 
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 70  ------------------IVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
                             IVE L+  G D+NA +  K T LH+A  + H EV + L+  G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 112 ANISVLNSHEQTPIDEALSRGKMDIID 138
           A++   +   +T  D ++  G  D+ +
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAE 150

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 3e-09
 Identities = 13/44 (29%), Positives = 18/44 (40%)

Query: 57  TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH 100
             L  A+A G L  +  L+   V++NA N    T L    L   
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP 46

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 4e-08
 Identities = 7/32 (21%), Positives = 14/32 (43%)

Query: 47  PLDSKDSQGRTALHMASANGHLGIVEYLIGRG 78
            +  ++ +G TA  +A   G   +V  +   G
Sbjct: 125 NVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-06
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 81  INASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
           +   N + +T    A L G  EV   +  +G
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 8e-06
 Identities = 7/31 (22%), Positives = 11/31 (35%)

Query: 90  TPLHYACLNGHTEVAKKLVLSGANISVLNSH 120
             L  A   G  E    L+ +  N++  N  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGF 33

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (75), Expect = 0.004
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 24 DALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHM 61
          + L +AA   D+E + SL    V +++++  GRTAL +
Sbjct: 3  NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV 40

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 1e-08
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 45  GVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVA 104
           G  ++  D  G   +H+A   GH  +V +L     D++  +    TPL  A   G  ++ 
Sbjct: 91  GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHRRDARGLTPLELALQRGAQDLV 149

Query: 105 KKLV 108
             L 
Sbjct: 150 DILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 3e-07
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 48  LDSKDSQGRTALHMASANGHLGIVEYLIG 76
           L  +D++G T L +A   G   +V+ L G
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 1e-05
 Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 34/148 (22%)

Query: 24  DALLAAARYDDIEDVISL-ASAGVPLDSKDSQGRTALHMASANGHLGIVEY--------- 73
           D L  AA   D+++V  L     V  D+ +  G+TAL +         +E          
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 74  -----------------------LIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLS 110
                                  L+  G D+N  +     P+H A            + +
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV-QEGHTAVVSFLAA 122

Query: 111 GANISVLNSHEQTPIDEALSRGKMDIID 138
            +++   ++   TP++ AL RG  D++D
Sbjct: 123 ESDLHRRDARGLTPLELALQRGAQDLVD 150

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-05
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 54  QGRTALHMASANGHLGIVEYLIGR-GVDINASNEEKNTPLHYACLNGH 100
           +    L  A+A G +  V  L+ R  V  +A N    T L        
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST 48

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (75), Expect = 0.004
 Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)

Query: 89  NTPLHYACLNGHTEVAKKLVLS-GANISVLNSHEQTP 124
              L  A   G  +  ++L+     +   LN   +T 
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA 39

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 5e-06
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 54  QGRTALHMASANGHLGIVEYLIGRGVDINASNEEKN---TPLHYACLNGHTEVAKKLVLS 110
            G T LH A++  ++ + ++L+  G  + A                  G+T+ ++ L   
Sbjct: 66  DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 125

Query: 111 GANI 114
              +
Sbjct: 126 QEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 4e-05
 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 3/44 (6%)

Query: 41  LASAGVPLDSKD-SQGRTALHMASA--NGHLGIVEYLIGRGVDI 81
           L  +G  + +   S  +TA         G+    ++L G    +
Sbjct: 86  LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 2e-04
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 57  TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH 100
             L  +S  G   +V+ +I    D +  N+E  T LH A   GH
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH 46

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 0.002
 Identities = 5/31 (16%), Positives = 14/31 (45%)

Query: 90  TPLHYACLNGHTEVAKKLVLSGANISVLNSH 120
             L  + L G  ++ ++++    + S+ N  
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE 33

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 7e-06
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 49  DSKDSQGRTALHMASANGHLGIVEYLI 75
           D +D+ GR  + +A   GH  +  YL 
Sbjct: 96  DVRDAWGRLPVDLAEELGHRDVARYLR 122

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-05
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 57 TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYAC 96
            L  A+A G +  V  L+  G + NA N     P+    
Sbjct: 5  DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM 44

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 4e-05
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 82  NASNEEKNTPLHYACLNGHTEVAKKLVLSGA 112
           +  +     P+  A   GH +VA+ L  + A
Sbjct: 96  DVRDAWGRLPVDLAEELGHRDVARYL-RAAA 125

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 1e-04
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 86  EEKNTPLHYACLNGHTEVAKKLVLSGAN 113
           E     L  A   G  E  + L+ +GAN
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGAN 28

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (87), Expect = 6e-05
 Identities = 5/20 (25%), Positives = 8/20 (40%)

Query: 89  NTPLHYACLNGHTEVAKKLV 108
           +    +A  NG  +  K  V
Sbjct: 3   DKEFMWALKNGDLDEVKDYV 22

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.3 bits (74), Expect = 0.004
 Identities = 5/19 (26%), Positives = 7/19 (36%)

Query: 57 TALHMASANGHLGIVEYLI 75
               A  NG L  V+  +
Sbjct: 4  KEFMWALKNGDLDEVKDYV 22

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.98
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.97
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.92
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.92
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.9
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.8
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.79
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.78

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.3e-32  Score=162.49  Aligned_cols=120  Identities=25%  Similarity=0.359  Sum_probs=113.2

Q ss_pred             cHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCC-CHHHHHHhcCc
Q 031662           22 NIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKN-TPLHYACLNGH  100 (155)
Q Consensus        22 ~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-t~l~~a~~~~~  100 (155)
                      +.++||+|++.|+++++++|+++|++++.++..|.|++|+| ..++.+++++|+++|++++.++..+. +|||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a-~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSS-CTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            34789999999999999999999999999999999999976 47899999999999999999988776 69999999999


Q ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHH
Q 031662          101 TEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINT  142 (155)
Q Consensus       101 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~  142 (155)
                      .+++++|+++|++++.+|..|+||+++|++.|+.+++++|++
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999975

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4e-31  Score=158.09  Aligned_cols=124  Identities=27%  Similarity=0.347  Sum_probs=115.3

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHH
Q 031662           23 IDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTE  102 (155)
Q Consensus        23 ~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  102 (155)
                      .+.|+.|+..|+.+++++|+++|++++.++..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCcccCC-CCCCHHHHH--HHCCCHHHHHHHHHHHhh
Q 031662          103 VAKKLVLSGANISVLNS-HEQTPIDEA--LSRGKMDIIDAINTAVAQ  146 (155)
Q Consensus       103 ~~~~Ll~~~~~~~~~~~-~~~t~l~~a--~~~~~~~~~~~L~~~g~~  146 (155)
                      ++++|+++|++++..+. .++||+.++  ...|+.+++++|++.+.+
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~~  128 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK  128 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHHh
Confidence            99999999999997764 578887765  567899999999988764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=1e-31  Score=158.18  Aligned_cols=107  Identities=29%  Similarity=0.447  Sum_probs=104.1

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHH
Q 031662           23 IDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTE  102 (155)
Q Consensus        23 ~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  102 (155)
                      -|||++|++.|+++++++|+++|++++.++..|+||||+|+..++.+++++++++|++++.+|..|.||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHH
Q 031662          103 VAKKLVLSGANISVLNSHEQTPIDEAL  129 (155)
Q Consensus       103 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~  129 (155)
                      ++++|+++|++++.+|..|.|||++|.
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHHh
Confidence            999999999999999999999999884

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.5e-29  Score=153.33  Aligned_cols=127  Identities=27%  Similarity=0.410  Sum_probs=115.7

Q ss_pred             ccHHHHHHHHHhCCHHHHHHHHHcCCCCCCC------CCCCccHHHHHHhC---CCHHHHHHHHhcCCCCCCCCCCCCCH
Q 031662           21 ENIDALLAAARYDDIEDVISLASAGVPLDSK------DSQGRTALHMASAN---GHLGIVEYLIGRGVDINASNEEKNTP   91 (155)
Q Consensus        21 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~------~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~t~   91 (155)
                      .....|+.|++.+++..+..++..|.+++..      +..|+||||+|+..   ++.+++++|+++|++++.+|..|+||
T Consensus         5 ~~l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~Tp   84 (154)
T d1dcqa1           5 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA   84 (154)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccc
Confidence            3445678899999999999999999877654      56789999999974   57899999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhc
Q 031662           92 LHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQL  147 (155)
Q Consensus        92 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~  147 (155)
                      ||+|+..|+.+++++|+++|++++.+|..|+|||++|++.|+.+++++|++.++..
T Consensus        85 Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          85 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999988654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-29  Score=163.46  Aligned_cols=136  Identities=19%  Similarity=0.263  Sum_probs=102.4

Q ss_pred             cCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q 031662           16 ETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYA   95 (155)
Q Consensus        16 ~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a   95 (155)
                      ......+.++++.++..++.+++++|++.+.+++..+..|.||||+|+..++.+++++|+++|++++.++..+.||||++
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a  143 (223)
T d1uoha_          64 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA  143 (223)
T ss_dssp             CCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhh
Confidence            33444556677777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           96 CLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        96 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      +..++.+++++|.+.+.+++.++..|+|||++|+..|+.+++++|+++|++++..+
T Consensus       144 ~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d  199 (223)
T d1uoha_         144 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN  199 (223)
T ss_dssp             HHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred             hhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCC
Confidence            77777777777777777777777777777777777777777777777777776654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=5.5e-29  Score=163.77  Aligned_cols=131  Identities=25%  Similarity=0.258  Sum_probs=93.5

Q ss_pred             cCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC-----------------------------------------
Q 031662           16 ETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQ-----------------------------------------   54 (155)
Q Consensus        16 ~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~-----------------------------------------   54 (155)
                      +..+..|.||||+|++.|+.+++++|++.|++++..+..                                         
T Consensus        39 ~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  118 (255)
T d1oy3d_          39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD  118 (255)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------
T ss_pred             cCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhh
Confidence            445566778888888888888888888877766555443                                         


Q ss_pred             ---------------------------------------CccHHHHHHhCCCHHHHHHHHhcCCCCCC-CCCCCCCHHHH
Q 031662           55 ---------------------------------------GRTALHMASANGHLGIVEYLIGRGVDINA-SNEEKNTPLHY   94 (155)
Q Consensus        55 ---------------------------------------~~~~l~~a~~~~~~~~~~~ll~~~~~~~~-~~~~~~t~l~~   94 (155)
                                                             |.||||+|+..++.+++++|++.+++.+. ++..|.||||+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~  198 (255)
T d1oy3d_         119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL  198 (255)
T ss_dssp             -------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred             hcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccc
Confidence                                                   35666666666666666666666666554 34567777777


Q ss_pred             HHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhh
Q 031662           95 ACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQ  146 (155)
Q Consensus        95 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~  146 (155)
                      |+..++.+++++|+++|++++.+|..|+|||++|+..++.+++++|+++||+
T Consensus       199 A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             cccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            7777777777777777777777777777777777777777777777777776

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.8e-29  Score=152.96  Aligned_cols=130  Identities=23%  Similarity=0.402  Sum_probs=118.6

Q ss_pred             CCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCH
Q 031662           12 TQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTP   91 (155)
Q Consensus        12 ~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~   91 (155)
                      +..+...+..|.||||+|+ .++.+++++|++.+.+++..+..+.+|+++++..++.++++++++++++++.++..|.||
T Consensus        26 ~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~  104 (156)
T d1bd8a_          26 LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP  104 (156)
T ss_dssp             CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred             CCCCCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCee
Confidence            4556667788999999887 488999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHH
Q 031662           92 LHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTA  143 (155)
Q Consensus        92 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~  143 (155)
                      ||+|+..|+.+++++|+ .|++++.+|.+|+|||++|+..|+.+++++|+++
T Consensus       105 L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         105 IHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999999999999887 6899999999999999999999999999999875

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-28  Score=159.91  Aligned_cols=131  Identities=31%  Similarity=0.385  Sum_probs=93.8

Q ss_pred             cCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCC
Q 031662           11 RTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNT   90 (155)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t   90 (155)
                      .+...+..+..|.||||+|+..|+.+++++|++.|.+++.++..|.||||+|+..++.+++++|...+.+++.+|..|.|
T Consensus        92 ~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~T  171 (223)
T d1uoha_          92 KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNT  171 (223)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred             cCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCc
Confidence            34455566667777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHH
Q 031662           91 PLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINT  142 (155)
Q Consensus        91 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~  142 (155)
                      |||+|+..|+.+++++|+++|++++.+|.+|+|||++| ..|+.+++++|++
T Consensus       172 pL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         172 PLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             eeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            77777777777777777777777777777777777766 3566777776664

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.7e-28  Score=149.31  Aligned_cols=117  Identities=32%  Similarity=0.486  Sum_probs=95.1

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHH----------------------------
Q 031662           23 IDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYL----------------------------   74 (155)
Q Consensus        23 ~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l----------------------------   74 (155)
                      -|||+.|++.|+.+++++|+++|++++ .+..|.||||+|+..++.++++.+                            
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            378888888999999999988888776 577888888888888765555444                            


Q ss_pred             -----HhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHH
Q 031662           75 -----IGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI  140 (155)
Q Consensus        75 -----l~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  140 (155)
                           ..++.+.+.++..|.||||+|+..|+.+++++|++.|++++.+|.+|.|||++|+..|+.+++++|
T Consensus        82 ~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence                 445556677788888888888888888888888888888888888888888888888888888876

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.8e-28  Score=161.25  Aligned_cols=135  Identities=23%  Similarity=0.248  Sum_probs=102.1

Q ss_pred             CCCcccHHHHHHHHHhCCHHHHHHHHHcCCC---CCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC-----
Q 031662           17 TSSPENIDALLAAARYDDIEDVISLASAGVP---LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK-----   88 (155)
Q Consensus        17 ~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-----   88 (155)
                      ..+.+|.||||.|++.|+.+++++|++.+++   ++.++..|.||||+|+..++.+++++|+++|++++.+|..|     
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~   83 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH   83 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhh
Confidence            4568899999999999999999999999876   56778889999999999999999999999998866655444     


Q ss_pred             ---------------------------------------------------------------------------CCHHH
Q 031662           89 ---------------------------------------------------------------------------NTPLH   93 (155)
Q Consensus        89 ---------------------------------------------------------------------------~t~l~   93 (155)
                                                                                                 .||||
T Consensus        84 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh  163 (255)
T d1oy3d_          84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (255)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             hhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccc
Confidence                                                                                       45555


Q ss_pred             HHHhcCcHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           94 YACLNGHTEVAKKLVLSGANISVL-NSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        94 ~a~~~~~~~~~~~Ll~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                      +|+..++.+++++|++.+++.+.. +..|.||||+|+..|+.+++++|+++|++++..+
T Consensus       164 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d  222 (255)
T d1oy3d_         164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARM  222 (255)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             ccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCC
Confidence            556666666666666666555542 4456666666666666666666666666665544

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=8.5e-28  Score=160.78  Aligned_cols=133  Identities=26%  Similarity=0.389  Sum_probs=119.1

Q ss_pred             cccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCC----------------
Q 031662           20 PENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINA----------------   83 (155)
Q Consensus        20 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~----------------   83 (155)
                      ..+.|+|+.||+.|++++|++|+++|++++.+|..|.||||+|+..|+.+++++|++++.+...                
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccccc
Confidence            4567899999999999999999999999999999999999999999999999999987765222                


Q ss_pred             -----------------------------------------------------------------------------CCC
Q 031662           84 -----------------------------------------------------------------------------SNE   86 (155)
Q Consensus        84 -----------------------------------------------------------------------------~~~   86 (155)
                                                                                                   .+.
T Consensus       118 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (291)
T d1s70b_         118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             ccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccC
Confidence                                                                                         224


Q ss_pred             CCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           87 EKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        87 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      .|.|||+.|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus       198 ~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~  263 (291)
T d1s70b_         198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK  263 (291)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            467888999999999999999999999999999999999999999999999999999999988764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.6e-28  Score=148.29  Aligned_cols=127  Identities=27%  Similarity=0.305  Sum_probs=86.3

Q ss_pred             CCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Q 031662           17 TSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYAC   96 (155)
Q Consensus        17 ~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~   96 (155)
                      ..+..|.||||+|+ .++.+++++|++++++++..+..+.++++.++..++.+.+++++..+.+++..+..+.+|+++|+
T Consensus        29 ~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~  107 (156)
T d1ihba_          29 AQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA  107 (156)
T ss_dssp             CCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccc
Confidence            34455556666554 45566666666666666555555666666666666666666666666666666677777777777


Q ss_pred             hcCcHHHHHHHHHcCC-CCcccCCCCCCHHHHHHHCCCHHHHHHHHHHH
Q 031662           97 LNGHTEVAKKLVLSGA-NISVLNSHEQTPIDEALSRGKMDIIDAINTAV  144 (155)
Q Consensus        97 ~~~~~~~~~~Ll~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g  144 (155)
                      ..++.+++++|+++++ +++.++..|+||||+|+..++.+++++|+++|
T Consensus       108 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         108 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            8888888887777765 67777777888888888888888888887765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=3.4e-27  Score=150.96  Aligned_cols=122  Identities=29%  Similarity=0.370  Sum_probs=99.0

Q ss_pred             CcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCC---------------------------------------------
Q 031662           19 SPENIDALLAAARYDDIEDVISLASAGVPLDSKDS---------------------------------------------   53 (155)
Q Consensus        19 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~---------------------------------------------   53 (155)
                      +..|.||||+||+.|+.+++++|++.+++++.++.                                             
T Consensus        20 d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (209)
T d1ot8a_          20 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR   99 (209)
T ss_dssp             HHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            57889999999999999999999999887665443                                             


Q ss_pred             ----------------------CCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcC
Q 031662           54 ----------------------QGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG  111 (155)
Q Consensus        54 ----------------------~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  111 (155)
                                            .|.|++++++..+...+++.++..+.+++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       100 ~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  179 (209)
T d1ot8a_         100 LAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF  179 (209)
T ss_dssp             TTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCC
Confidence                                  3467777777777777787777777777777778888888888888888888888888


Q ss_pred             CCCcccCCCCCCHHHHHHHCCCHHHHHHH
Q 031662          112 ANISVLNSHEQTPIDEALSRGKMDIIDAI  140 (155)
Q Consensus       112 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  140 (155)
                      ++++.+|..|+|||++|++.|+.++|++|
T Consensus       180 ad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         180 ANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            88887788888888888888888888765

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-26  Score=142.02  Aligned_cols=127  Identities=21%  Similarity=0.335  Sum_probs=120.1

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHH
Q 031662           24 DALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEV  103 (155)
Q Consensus        24 ~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  103 (155)
                      ++||.|+..|+++++++|+++|++++.+|..|.||||+|+ .++.+++++|++.+++++.++..+.++++.++..+..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            7999999999999999999999999999999999999875 789999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHh-hcccCC
Q 031662          104 AKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA-QLELGG  151 (155)
Q Consensus       104 ~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~-~~~~~~  151 (155)
                      +++|++.+.+++..+..+.+|+++|+..++.+++++|+++|. +++..+
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d  130 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN  130 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence            999999999999999999999999999999999999999986 555443

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-26  Score=154.03  Aligned_cols=136  Identities=24%  Similarity=0.272  Sum_probs=122.2

Q ss_pred             CCCcccHHHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHhCC----CHHHHHHHHhcCCCCCCCCCCCCCH
Q 031662           17 TSSPENIDALLAAARYDDIEDVISLASA-GVPLDSKDSQGRTALHMASANG----HLGIVEYLIGRGVDINASNEEKNTP   91 (155)
Q Consensus        17 ~~~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~l~~a~~~~----~~~~~~~ll~~~~~~~~~~~~~~t~   91 (155)
                      .....+.||||.|++.|+.+++++|++. +.+++..+..+.+++..+....    ...++++|+++|++++.++..|.||
T Consensus       143 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~  222 (285)
T d1wdya_         143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP  222 (285)
T ss_dssp             HTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             hhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCc
Confidence            4455678899999999999999999975 7889999988888877655443    3568999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           92 LHYACLNGHTEVAKKLVLS-GANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        92 l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      ||+|+..++.+++++|++. |++++.+|.+|.||||+|++.|+.+++++|+++||+++.++.
T Consensus       223 L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             cchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            9999999999999999974 899999999999999999999999999999999999998874

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=1.3e-26  Score=153.84  Aligned_cols=133  Identities=23%  Similarity=0.348  Sum_probs=101.1

Q ss_pred             ccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHH--------------
Q 031662           10 NRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLI--------------   75 (155)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll--------------   75 (155)
                      ..|.+++..+..|.||||+|++.|+.+++++|+++|++++.++..|.|++++|+..++..+++++.              
T Consensus        62 ~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~  141 (277)
T d2fo1e1          62 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR  141 (277)
T ss_dssp             HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred             HcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhccccccccccccc
Confidence            446677778899999999999999999999999999999888877766666666655544433332              


Q ss_pred             -------------------------------------------------------------------hcCCCCCCCCCCC
Q 031662           76 -------------------------------------------------------------------GRGVDINASNEEK   88 (155)
Q Consensus        76 -------------------------------------------------------------------~~~~~~~~~~~~~   88 (155)
                                                                                         ..+.+.+.+|..|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g  221 (277)
T d2fo1e1         142 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG  221 (277)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred             ccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCC
Confidence                                                                               2234455566777


Q ss_pred             CCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHH
Q 031662           89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINT  142 (155)
Q Consensus        89 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~  142 (155)
                      .||||+|+..|+.+++++|+++|++++.+|.+|+|||++|++.|+.+++++|.+
T Consensus       222 ~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         222 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            778888888888888888888888887777788888888888888888877764

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-26  Score=161.10  Aligned_cols=129  Identities=26%  Similarity=0.407  Sum_probs=121.0

Q ss_pred             CCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q 031662           13 QTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPL   92 (155)
Q Consensus        13 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l   92 (155)
                      ......+..|.+|++.|++.++.+++++|++.|++++..+..+.||||.++..++.++++++++.|++++.+|..|+|||
T Consensus       255 ~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~L  334 (408)
T d1n11a_         255 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPL  334 (408)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             cccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHH
Confidence            34445567888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHH
Q 031662           93 HYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN  141 (155)
Q Consensus        93 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~  141 (155)
                      |+|+..|+.+++++|+++|++++.+|.+|+|||++|++.|+.++|++|.
T Consensus       335 h~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         335 HQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998763

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.6e-26  Score=139.47  Aligned_cols=127  Identities=27%  Similarity=0.351  Sum_probs=117.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHH
Q 031662           24 DALLAAARYDDIEDVISLASA-GVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTE  102 (155)
Q Consensus        24 ~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  102 (155)
                      +.|+.|+..|++++|+.|+++ +.+++..|..|+||||+|+ .++.+++++|++++.+++..+..+.+|++.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            569999999999999999986 6799999999999999986 47899999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662          103 VAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       103 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      ++++++++|++++.++..|.|||++|+..|+.+++++|+ .|++++..+.
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~  131 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDA  131 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCT
T ss_pred             ccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCC
Confidence            999999999999999999999999999999999999887 6788776543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.4e-26  Score=145.40  Aligned_cols=132  Identities=21%  Similarity=0.262  Sum_probs=117.2

Q ss_pred             ccHHHHHHHHHhCCHHHHHHHHH----cCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCC-----------
Q 031662           21 ENIDALLAAARYDDIEDVISLAS----AGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN-----------   85 (155)
Q Consensus        21 ~~~~~l~~A~~~~~~~~v~~ll~----~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-----------   85 (155)
                      +|.||||.||..|+.++++.|++    .|.+++.++..|+||||+|+..++.+++++|+++|++.+...           
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            57899999999999999988875    788999999999999999999999999999999887644332           


Q ss_pred             ------------------------------------------------------------CCCCCHHHHHHhcCcHHHHH
Q 031662           86 ------------------------------------------------------------EEKNTPLHYACLNGHTEVAK  105 (155)
Q Consensus        86 ------------------------------------------------------------~~~~t~l~~a~~~~~~~~~~  105 (155)
                                                                                  ..+.++++.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence                                                                        24567889999999999999


Q ss_pred             HHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662          106 KLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       106 ~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      ++++.|...+.++..|.|||++|+..|+.+++++|+++|+|++..+.
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~  208 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC  208 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999987653

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.9e-26  Score=148.08  Aligned_cols=142  Identities=22%  Similarity=0.233  Sum_probs=109.4

Q ss_pred             cCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCC------CC
Q 031662           11 RTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDIN------AS   84 (155)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~------~~   84 (155)
                      .+..++..+..|.||||+|+..|+.+++++|++.|++++..+..|.+||++++..++.++++.++..+....      ..
T Consensus        28 ~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  107 (221)
T d1iknd_          28 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT  107 (221)
T ss_dssp             -CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCC
T ss_pred             CCCCcccCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccc
Confidence            455667778899999999999999999999999999999999999999999998888888888887654422      22


Q ss_pred             CCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           85 NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLN-SHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        85 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      ...+.||++.|+..++.+++++|++.|+.++..+ .+|.||||+|++.|+.+++++|+++|+|++..+.
T Consensus       108 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~  176 (221)
T d1iknd_         108 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTY  176 (221)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCT
T ss_pred             ccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCC
Confidence            3456677777777777777777777777766543 4577777777777777777777777777766543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=4.2e-27  Score=156.16  Aligned_cols=132  Identities=24%  Similarity=0.289  Sum_probs=110.6

Q ss_pred             cccHHHHHHHHHhCCHHHHHHH--------HHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCH
Q 031662           20 PENIDALLAAARYDDIEDVISL--------ASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTP   91 (155)
Q Consensus        20 ~~~~~~l~~A~~~~~~~~v~~l--------l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~   91 (155)
                      ..|.||||+|+..|+.+++++|        ++.|+++|.+|..|.||||+|+..++.+++++|+++|++++.++..|.||
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~  110 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  110 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccccccccccccccc
Confidence            4589999999999999888766        56789999999999999999999999999999999999988887766666


Q ss_pred             HHHHHh--------------------------------------------------------------------------
Q 031662           92 LHYACL--------------------------------------------------------------------------   97 (155)
Q Consensus        92 l~~a~~--------------------------------------------------------------------------   97 (155)
                      +++|+.                                                                          
T Consensus       111 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  190 (277)
T d2fo1e1         111 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA  190 (277)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred             ccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCc
Confidence            555554                                                                          


Q ss_pred             ------cCcHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCC
Q 031662           98 ------NGHTEVAKKLV-LSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGG  151 (155)
Q Consensus        98 ------~~~~~~~~~Ll-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~  151 (155)
                            .++.+++++++ ..+.+.+.+|..|+|||++|+..|+.+++++|+++|++++..+
T Consensus       191 L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d  251 (277)
T d2fo1e1         191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVD  251 (277)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC
T ss_pred             cccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcC
Confidence                  44444444433 4456677789999999999999999999999999999998765

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=8.2e-27  Score=136.97  Aligned_cols=97  Identities=29%  Similarity=0.426  Sum_probs=93.5

Q ss_pred             ccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHH
Q 031662           56 RTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMD  135 (155)
Q Consensus        56 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  135 (155)
                      .|||++|++.|+.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccCCC
Q 031662          136 IIDAINTAVAQLELGGF  152 (155)
Q Consensus       136 ~~~~L~~~g~~~~~~~~  152 (155)
                      ++++|+++|++++..+.
T Consensus        83 ~v~~Ll~~Gad~~~~d~   99 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGP   99 (118)
T ss_dssp             HHHHHHTTCCCSSSSSS
T ss_pred             hhhhhhcccccceeeCC
Confidence            99999999999987654

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.7e-25  Score=144.83  Aligned_cols=140  Identities=21%  Similarity=0.223  Sum_probs=115.6

Q ss_pred             CCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCC---CC-----------------------------------C
Q 031662           13 QTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSK---DS-----------------------------------Q   54 (155)
Q Consensus        13 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~---~~-----------------------------------~   54 (155)
                      ......+..|.||||+|+..|+.+++++|++.|++++..   +.                                   .
T Consensus        25 ~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (229)
T d1ixva_          25 SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ  104 (229)
T ss_dssp             GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTT
T ss_pred             CcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            445667788999999999999999999999988776532   22                                   2


Q ss_pred             CccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHCCC
Q 031662           55 GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG-ANISVLNSHEQTPIDEALSRGK  133 (155)
Q Consensus        55 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~  133 (155)
                      +.++++.++..++.++++.|+..+...+.++..|.||+|+|+..|+.+++++|++.+ .+++.+|.+|+||||+|+..|+
T Consensus       105 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~  184 (229)
T d1ixva_         105 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH  184 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhccccc
Confidence            355666666666677777777777778888899999999999999999999999887 6788999999999999999999


Q ss_pred             HHHHHHHHH-HHhhcccCCC
Q 031662          134 MDIIDAINT-AVAQLELGGF  152 (155)
Q Consensus       134 ~~~~~~L~~-~g~~~~~~~~  152 (155)
                      .+++++|++ .|++++..+-
T Consensus       185 ~~~v~~Ll~~~gad~~~~d~  204 (229)
T d1ixva_         185 GDAAVLLVEKYGAEYDLVDN  204 (229)
T ss_dssp             HHHHHHHHHHHCCCSCCCCT
T ss_pred             HHHHHHHHHhcCCCCCCcCC
Confidence            999999996 5899887653

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=3.2e-28  Score=166.87  Aligned_cols=132  Identities=17%  Similarity=0.138  Sum_probs=113.4

Q ss_pred             CCCcccHHHHHHHHHhCCHHHHHH---HHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCC--CCCCCH
Q 031662           17 TSSPENIDALLAAARYDDIEDVIS---LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN--EEKNTP   91 (155)
Q Consensus        17 ~~~~~~~~~l~~A~~~~~~~~v~~---ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~--~~~~t~   91 (155)
                      ..+..|.|+|++|++.|+.+++++   |++.|++++.++..|+||||+|+..|+.+++++|++.|++++..+  ..|.||
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA  164 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCh
Confidence            445688999999999999877765   788999999999999999999999999999999999999988765  458999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcc
Q 031662           92 LHYACLNGHTEVAKKLVLSGANI---SVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLE  148 (155)
Q Consensus        92 l~~a~~~~~~~~~~~Ll~~~~~~---~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  148 (155)
                      ||+|+..|+.+++++|++.|+..   +..+.++.||++.|+..|+.+++++|++.|++++
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc
Confidence            99999999999999999998765   3344566788889999999999999999998875

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.3e-26  Score=135.98  Aligned_cols=96  Identities=28%  Similarity=0.303  Sum_probs=92.3

Q ss_pred             cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHH
Q 031662           57 TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI  136 (155)
Q Consensus        57 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  136 (155)
                      ++|+.|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.|++++.+|.+|+||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccCCC
Q 031662          137 IDAINTAVAQLELGGF  152 (155)
Q Consensus       137 ~~~L~~~g~~~~~~~~  152 (155)
                      +++|+++|++++..++
T Consensus        83 v~~Ll~~ga~v~~~~~   98 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTY   98 (130)
T ss_dssp             HHHHHHTTCCTTCCCS
T ss_pred             HHHHHHcCCCcccccC
Confidence            9999999999886554

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.7e-25  Score=143.87  Aligned_cols=128  Identities=25%  Similarity=0.295  Sum_probs=118.5

Q ss_pred             cCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcC-CCCCCCCCCCCCHHHH
Q 031662           16 ETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRG-VDINASNEEKNTPLHY   94 (155)
Q Consensus        16 ~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~t~l~~   94 (155)
                      ...+..+.++++.++..++.+++++++..+.+.+..+..|+||||+|+..++.+++++|++.+ .+++.+|..|.||||+
T Consensus        99 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~  178 (229)
T d1ixva_          99 NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH  178 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHH
T ss_pred             cccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhh
Confidence            345567788999999999999999999999999999999999999999999999999999986 6789999999999999


Q ss_pred             HHhcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhh
Q 031662           95 ACLNGHTEVAKKLVL-SGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQ  146 (155)
Q Consensus        95 a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~  146 (155)
                      |+..|+.+++++|++ .|++++.+|..|+|||++|+.   .+++++|+++|+|
T Consensus       179 A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             hcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            999999999999996 599999999999999999874   5899999999986

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.3e-25  Score=151.22  Aligned_cols=132  Identities=17%  Similarity=0.144  Sum_probs=106.3

Q ss_pred             CcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCH-------HHHHHHHhcCCCCCCCCCCCCCH
Q 031662           19 SPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHL-------GIVEYLIGRGVDINASNEEKNTP   91 (155)
Q Consensus        19 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~-------~~~~~ll~~~~~~~~~~~~~~t~   91 (155)
                      +..|.||||+|+..|+.++|++|+++|++++.++..|.||||.||..++.       ++++++.   ..+...|..|+||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t~  180 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRTI  180 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccCCH
Confidence            67899999999999999999999999999999999999999999987652       3444433   3456678889999


Q ss_pred             HHHHHhcCc----HHH--------HHHHHHcCC-------------------------------------CCcccCCCCC
Q 031662           92 LHYACLNGH----TEV--------AKKLVLSGA-------------------------------------NISVLNSHEQ  122 (155)
Q Consensus        92 l~~a~~~~~----~~~--------~~~Ll~~~~-------------------------------------~~~~~~~~~~  122 (155)
                      ||+++..+.    ...        +.++.+.+.                                     .++.+|.+|+
T Consensus       181 lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~  260 (301)
T d1sw6a_         181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD  260 (301)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSC
T ss_pred             HHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCC
Confidence            998875443    222        233333322                                     1577899999


Q ss_pred             CHHHHHHHCCCHHHHHHHHHHHhhcccCCCc
Q 031662          123 TPIDEALSRGKMDIIDAINTAVAQLELGGFT  153 (155)
Q Consensus       123 t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~  153 (155)
                      ||||+|++.|+.+++++|+++|+++++.+..
T Consensus       261 TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~  291 (301)
T d1sw6a_         261 TCLNIAARLGNISIVDALLDYGADPFIANKS  291 (301)
T ss_dssp             CHHHHHHHHCCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            9999999999999999999999999988754

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.92  E-value=2.7e-25  Score=148.53  Aligned_cols=135  Identities=27%  Similarity=0.356  Sum_probs=114.5

Q ss_pred             ccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCC-------------------------------------
Q 031662           10 NRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKD-------------------------------------   52 (155)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~-------------------------------------   52 (155)
                      +.|.+++..+..|.||||+|+..|+.+++++|++++.+....+                                     
T Consensus        61 ~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~  140 (291)
T d1s70b_          61 ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD  140 (291)
T ss_dssp             HHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             HCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhcccccCcccccccccCc
Confidence            3455556667888899999999999999999998876533221                                     


Q ss_pred             --------------------------------------------------------CCCccHHHHHHhCCCHHHHHHHHh
Q 031662           53 --------------------------------------------------------SQGRTALHMASANGHLGIVEYLIG   76 (155)
Q Consensus        53 --------------------------------------------------------~~~~~~l~~a~~~~~~~~~~~ll~   76 (155)
                                                                              ..|.||||+|+..++.+++++|++
T Consensus       141 ~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  220 (291)
T d1s70b_         141 TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ  220 (291)
T ss_dssp             CHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhccccc
Confidence                                                                    134688899999999999999999


Q ss_pred             cCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcc
Q 031662           77 RGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLE  148 (155)
Q Consensus        77 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~  148 (155)
                      .|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|++    +++++|.+.....+
T Consensus       221 ~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~~~~~L~~~~~~~~  288 (291)
T d1s70b_         221 ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEELQKKQN  288 (291)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----GGGHHHHHHHHHTT
T ss_pred             ceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----HHHHHHHHHhhhcc
Confidence            999999999999999999999999999999999999999999999999999965    68888877765544

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.2e-24  Score=149.78  Aligned_cols=137  Identities=25%  Similarity=0.317  Sum_probs=129.2

Q ss_pred             cCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q 031662           16 ETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYA   95 (155)
Q Consensus        16 ~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a   95 (155)
                      ...+..+.|||+.|+..+..+++++++..+...+..+..|.+|++.|+..++.+++++|+++|++++..+..+.|||+.+
T Consensus       225 ~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~  304 (408)
T d1n11a_         225 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA  304 (408)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHH
T ss_pred             cccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhh
Confidence            34556778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662           96 CLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus        96 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      +..++.++++++++.|++++.+|..|.||||+|++.|+.+++++|+++|++++..+.
T Consensus       305 ~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~  361 (408)
T d1n11a_         305 SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS  361 (408)
T ss_dssp             HHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCS
T ss_pred             cccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999987653

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.7e-24  Score=138.71  Aligned_cols=138  Identities=23%  Similarity=0.294  Sum_probs=122.1

Q ss_pred             cccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCC------CCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCC
Q 031662            9 INRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLD------SKDSQGRTALHMASANGHLGIVEYLIGRGVDIN   82 (155)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~------~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~   82 (155)
                      ++.+.++...+..|.+||+.++..+..++++.+++.+....      .....+.+++|.|+..++.+++++++..+..++
T Consensus        59 ~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~  138 (221)
T d1iknd_          59 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN  138 (221)
T ss_dssp             CSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred             ccccccccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccc
Confidence            34555666777889999999999999999999999875432      234557899999999999999999999999988


Q ss_pred             CCC-CCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhh
Q 031662           83 ASN-EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQ  146 (155)
Q Consensus        83 ~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~  146 (155)
                      ..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..++.+++++|.+.+.+
T Consensus       139 ~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         139 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             cccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            765 5799999999999999999999999999999999999999999999999999999988654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.3e-25  Score=140.39  Aligned_cols=128  Identities=29%  Similarity=0.313  Sum_probs=114.7

Q ss_pred             cCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCC-------------------------------------
Q 031662           11 RTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDS-------------------------------------   53 (155)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~-------------------------------------   53 (155)
                      .+.+++..+..|.||||+|+..|+.+++++|++.+++.+....                                     
T Consensus        29 ~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (228)
T d1k1aa_          29 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY  108 (228)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCT
T ss_pred             CCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhcccccccccccccc
Confidence            4556667788999999999999999999999999876544332                                     


Q ss_pred             ----------------------------------CCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Q 031662           54 ----------------------------------QGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNG   99 (155)
Q Consensus        54 ----------------------------------~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~   99 (155)
                                                        .+.++++.|+..+...+++++++.+...+.++..|.|||++|+..|
T Consensus       109 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g  188 (228)
T d1k1aa_         109 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG  188 (228)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHT
T ss_pred             ccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcC
Confidence                                              3478889999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHH
Q 031662          100 HTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIID  138 (155)
Q Consensus       100 ~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  138 (155)
                      +.+++++|+++|++++.+|.+|+|||++|++.|+.++++
T Consensus       189 ~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         189 LLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            999999999999999999999999999999999988874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=8.3e-24  Score=129.20  Aligned_cols=96  Identities=24%  Similarity=0.240  Sum_probs=89.8

Q ss_pred             CCCcccHHHHHHHHHh---CCHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Q 031662           17 TSSPENIDALLAAARY---DDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLH   93 (155)
Q Consensus        17 ~~~~~~~~~l~~A~~~---~~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~   93 (155)
                      ..+..|.||||+|++.   +..+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||||
T Consensus        40 ~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~  119 (154)
T d1dcqa1          40 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD  119 (154)
T ss_dssp             SCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHH
Confidence            3456788999999985   6789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcHHHHHHHHHcCC
Q 031662           94 YACLNGHTEVAKKLVLSGA  112 (155)
Q Consensus        94 ~a~~~~~~~~~~~Ll~~~~  112 (155)
                      +|+..|+.+++++|++.+.
T Consensus       120 ~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1         120 IAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHhCC
Confidence            9999999999999998754

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=5.1e-24  Score=136.00  Aligned_cols=118  Identities=25%  Similarity=0.371  Sum_probs=107.1

Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCC------------------------------
Q 031662           35 IEDVISLASAGVPLDS-KDSQGRTALHMASANGHLGIVEYLIGRGVDINA------------------------------   83 (155)
Q Consensus        35 ~~~v~~ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~------------------------------   83 (155)
                      .|+|++|+++|++++. .|..|.||||+||..|+.+++++|+..|++++.                              
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            4899999999999987 588999999999999999999999998776433                              


Q ss_pred             -------------------------------------CCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Q 031662           84 -------------------------------------SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPID  126 (155)
Q Consensus        84 -------------------------------------~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~  126 (155)
                                                           ++..|.||+++++..+..++++.+++.+.+++.+|..|.||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~  161 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF  161 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccc
Confidence                                                 3455778999999999999999999999999999999999999


Q ss_pred             HHHHCCCHHHHHHHHHHHhhcccCCC
Q 031662          127 EALSRGKMDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       127 ~a~~~~~~~~~~~L~~~g~~~~~~~~  152 (155)
                      +|+..|+.+++++|+++|++++..+.
T Consensus       162 ~A~~~g~~~~v~~Ll~~gad~n~~d~  187 (209)
T d1ot8a_         162 LAAREGSYEASKALLDNFANREITDH  187 (209)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             hhccccHHHHHHHHHHCCCCCCCcCC
Confidence            99999999999999999999987653

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.89  E-value=3.5e-25  Score=151.67  Aligned_cols=104  Identities=18%  Similarity=0.129  Sum_probs=84.9

Q ss_pred             ccccCCCccCCCcccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCC--CCCccHHHHHHhCCCHHHHHHHHhcCCCCC---
Q 031662            8 SINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKD--SQGRTALHMASANGHLGIVEYLIGRGVDIN---   82 (155)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~---   82 (155)
                      .+..+..++..+..|+||||+|++.|+.++|++|++.|++++..+  ..|.||||+|+..|+.+++++|++.|+...   
T Consensus       112 L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~  191 (346)
T d2ajaa1         112 LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM  191 (346)
T ss_dssp             C--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHH
T ss_pred             HHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccc
Confidence            456677888889999999999999999999999999999988765  458999999999999999999999886542   


Q ss_pred             CCCCCCCCHHHHHHhcCcHHHHHHHHHcC
Q 031662           83 ASNEEKNTPLHYACLNGHTEVAKKLVLSG  111 (155)
Q Consensus        83 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  111 (155)
                      ..+..+.||++.|+..|+.+++++|++.|
T Consensus       192 ~~~~~~~t~l~~A~~~g~~~iv~~Ll~~g  220 (346)
T d2ajaa1         192 IQAENYYAFRWAAVGRGHHNVINFLLDCP  220 (346)
T ss_dssp             HHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             cccCCCcchhhHHhhcCHHHHHHHHHhCC
Confidence            23345667778888899999999887643

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.5e-23  Score=123.11  Aligned_cols=97  Identities=26%  Similarity=0.358  Sum_probs=90.3

Q ss_pred             CccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcccCCCCC-CHHHHHHHCCC
Q 031662           55 GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQ-TPIDEALSRGK  133 (155)
Q Consensus        55 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a~~~~~  133 (155)
                      +.++||+|+..|+.+++++|+++|++++.++..|.||+|+|+ .|+.+++++|+++|++++.++..+. ||||+|++.|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            457999999999999999999999999999999999999775 7999999999999999999988876 69999999999


Q ss_pred             HHHHHHHHHHHhhcccCCC
Q 031662          134 MDIIDAINTAVAQLELGGF  152 (155)
Q Consensus       134 ~~~~~~L~~~g~~~~~~~~  152 (155)
                      .+++++|+++|++++..+.
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~  100 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDA  100 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCT
T ss_pred             ccccccccccccccccccC
Confidence            9999999999999987764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.5e-18  Score=113.80  Aligned_cols=129  Identities=25%  Similarity=0.331  Sum_probs=119.0

Q ss_pred             ccHHHHHHHHHhCCHHHHHHHHHcCCCCCCCCC-CCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Q 031662           21 ENIDALLAAARYDDIEDVISLASAGVPLDSKDS-QGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNG   99 (155)
Q Consensus        21 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~   99 (155)
                      ++.|+|+.|++.|++++|++|+++|++++.++. .|+||||+|+..++.+++++|++.+......+..+.+|.+.++..+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            467899999999999999999999999987764 6999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHHHhhccc
Q 031662          100 HTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLEL  149 (155)
Q Consensus       100 ~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g~~~~~  149 (155)
                      ..+...++++...+....+..+.++++.++..++..++..++....+++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~  133 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL  133 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccc
Confidence            99999999999888888889999999999999999999999988766554

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=4e-20  Score=124.15  Aligned_cols=118  Identities=19%  Similarity=0.195  Sum_probs=90.3

Q ss_pred             cccCCCccCCCcccHHHHHHHHHhCC------H-HHHHHHHHcCCCCCCCCCCCccHHHHHHhCCC----HH--------
Q 031662            9 INRTQTTETSSPENIDALLAAARYDD------I-EDVISLASAGVPLDSKDSQGRTALHMASANGH----LG--------   69 (155)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~A~~~~~------~-~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~----~~--------   69 (155)
                      ++.+.++...+..|.||||.|+..++      + ++++++..   .++..+..|+|+||+++..+.    ..        
T Consensus       127 l~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~  203 (301)
T d1sw6a_         127 VKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI  203 (301)
T ss_dssp             HHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHH
Confidence            45566777788899999999998664      2 44444433   345678889999998875443    22        


Q ss_pred             HHHHHHhcCCC-------------------------------------CCCCCCCCCCHHHHHHhcCcHHHHHHHHHcCC
Q 031662           70 IVEYLIGRGVD-------------------------------------INASNEEKNTPLHYACLNGHTEVAKKLVLSGA  112 (155)
Q Consensus        70 ~~~~ll~~~~~-------------------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  112 (155)
                      ++.++...+..                                     +|.+|..|+||||+|+..|+.+++++|+++|+
T Consensus       204 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GA  283 (301)
T d1sw6a_         204 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA  283 (301)
T ss_dssp             HHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            23333333211                                     68889999999999999999999999999999


Q ss_pred             CCcccCCCCCCHHHHHH
Q 031662          113 NISVLNSHEQTPIDEAL  129 (155)
Q Consensus       113 ~~~~~~~~~~t~l~~a~  129 (155)
                      +++.+|..|+|||++|+
T Consensus       284 d~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         284 DPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCCCCCHHHHcC
Confidence            99999999999999874

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.6e-18  Score=105.22  Aligned_cols=74  Identities=30%  Similarity=0.382  Sum_probs=64.3

Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCccHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCcHHHHHHH
Q 031662           34 DIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL  107 (155)
Q Consensus        34 ~~~~v~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  107 (155)
                      +.+.+++++..+.+.+.++..|.||||+|+..++.+++++|++.|++++.+|..|.|||++|+..|+.+++++|
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            33444445555556677788999999999999999999999999999999999999999999999999999876