Citrus Sinensis ID: 031686

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MILSASNGRFIHALSVFCFIFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKLRNQK
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEccccccHHHHHHHHHHcccccEEEcccccHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHcccccccccEEEEEEccccccccccccccHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccEEEEEEEEEEEEEcccccHHHHHHHHHHccccEEEEEccccHHHHccccccEEEEEEcccHHHHHHHHHHHHHHHcccEEEEEEEccccccccHHHHcccccccccEEEEEEccccccccccccccHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
milsasngrfIHALSVFCFIFSDVSFTISVIddfislnkippmitysrettplilnsPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIypklkgqifdyfgVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLgdklrnqk
Flexible Loop (DISEMBL)
MILSASNGRFIHALSVFCFIFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYvlngeltlsnvksfaldflgdklrnqk
Low Complexity Region (SEG)
MILSASNGRFIHALSVFCFIFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKLRNQK
Disordered region (IsUnstruct)
*******GRFIHALSVFCFIFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG*******
Disordered Region (DISOPRED)
******NGRFIHALSVFCFIFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFL*DKL****
Disordered Region (DISEMBL)
MILSASNGRFIHALSVFCFIFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKLRNQK
Disordered Region (DISPRO)
MILSASNGRFIHALSVFCFIFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MILSASNGRFIHALSVFCFIFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKLRNQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
Q8VX13	579	Protein disulfide isomera	no	no	0.838	0.224	0.398	6e-20
Q67IX6	563	Protein disulfide isomera	yes	no	0.845	0.232	0.380	2e-18
Q9FF55	597	Protein disulfide isomera	no	no	0.838	0.217	0.368	2e-14
P05307	510	Protein disulfide-isomera	yes	no	0.767	0.233	0.314	7e-08
P04785	509	Protein disulfide-isomera	yes	no	0.767	0.233	0.307	1e-07
P09103	509	Protein disulfide-isomera	yes	no	0.767	0.233	0.307	2e-07
Q2HWU2	510	Protein disulfide-isomera	N/A	no	0.767	0.233	0.307	2e-07
Q5R5B6	508	Protein disulfide-isomera	yes	no	0.767	0.234	0.307	4e-07
P07237	508	Protein disulfide-isomera	yes	no	0.767	0.234	0.307	4e-07
P21195	509	Protein disulfide-isomera	yes	no	0.767	0.233	0.299	4e-07

>sp|Q8VX13|PDI13_ARATH Protein disulfide isomerase-like 1-3 OS=Arabidopsis thaliana GN=PDIL1-3 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 53/133 (39%), Positives = 84/133 (63%), Gaps = 3/133 (2%)

Query: 23  DVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLK-LLWLFAAVHDSEAK-SIFQET 80
           D +FT + I +F+S NK+P +I ++RE   LI  S +K  L LFA  ++SE      +E 
Sbjct: 291 DGNFTKTAIAEFVSANKVPLVINFTREGASLIFESSVKNQLILFAKANESEKHLPTLREV 350

Query: 81  ARAFKGKLLFVYSQIYPKLKGQ-IFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNV 139
           A++FKGK +FVY Q+  +  G+ +  +FGVT    +V+        +K++L+GELT++N+
Sbjct: 351 AKSFKGKFVFVYVQMDNEDYGEAVSGFFGVTGAAPKVLVYTGNEDMRKFILDGELTVNNI 410

Query: 140 KSFALDFLGDKLR 152
           K+ A DFL DKL+
Sbjct: 411 KTLAEDFLADKLK 423

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 4EC: .EC: 1

>sp|Q67IX6|PDI14_ORYSJ Protein disulfide isomerase-like 1-4 OS=Oryza sativa subsp. japonica GN=PDIL1-4 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 82/134 (61%), Gaps = 3/134 (2%)

Query: 21  FSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEAK--SIFQ 78
           F D  F  S I DF+S NK+P + T ++ET P I ++P+K   L   V +  +K   IF+
Sbjct: 266 FYDGPFKASAIADFVSANKLPLVNTLTQETAPSIFDNPIKKQILLFVVANESSKFLPIFK 325

Query: 79  ETARAFKGKLLFVYSQIYPKLKGQ-IFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLS 137
           E +++FKGKLLFV+ +   +  G+ + +YFG+T   + V+A       + + L+GE+++ 
Sbjct: 326 EASKSFKGKLLFVFVERDNEEVGEPVANYFGITGQETTVLAYTGNEDARNFFLDGEISVE 385

Query: 138 NVKSFALDFLGDKL 151
           N+K FA DFL +KL
Sbjct: 386 NIKRFAEDFLEEKL 399

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q9FF55|PDI14_ARATH Protein disulfide isomerase-like 1-4 OS=Arabidopsis thaliana GN=PDIL1-4 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 3/133 (2%)

Query: 23  DVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLK-LLWLFAAVHDSE-AKSIFQET 80
           D  F  S +  F+S NK+  +  ++RET P I  S +K  L LF   ++SE   + FQE 
Sbjct: 295 DGEFVKSALVSFVSANKLALVSVFTRETAPEIFESAIKKQLLLFVTKNESEKVLTEFQEA 354

Query: 81  ARAFKGKLLFVYSQIYPKLKGQ-IFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNV 139
           A++FKGKL+FV   +  +  G+ + +YFGV+    ++I        KKY  +GE+    +
Sbjct: 355 AKSFKGKLIFVSVDLDNEDYGKPVAEYFGVSGNGPKLIGYTGNEDPKKYFFDGEIQSDKI 414

Query: 140 KSFALDFLGDKLR 152
           K F  DFL DKL+
Sbjct: 415 KIFGEDFLNDKLK 427

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P05307|PDIA1_BOVIN Protein disulfide-isomerase OS=Bos taurus GN=P4HB PE=1 SV=1

 Score = 56.2 bits (134), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 8/127 (6%)

Query: 33  DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
           DFI  N++P +I ++ +T P I    +K   LL+L  +V D E K S F++ A +FKGK+
Sbjct: 229 DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYEGKLSNFKKAAESFKGKI 288

Query: 89  LFVYSQIYPKLKGQIFDYFGVT---CYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD 145
           LF++         +I ++FG+    C   R+I +     + K   + ELT   +  F   
Sbjct: 289 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYK-PESDELTAEKITEFCHR 347

Query: 146 FLGDKLR 152
           FL  K++
Sbjct: 348 FLEGKIK 354

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P04785|PDIA1_RAT Protein disulfide-isomerase OS=Rattus norvegicus GN=P4hb PE=1 SV=2

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 8/127 (6%)

Query: 33  DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
           DFI  N++P +I ++ +T P I    +K   LL+L  +V D + K S F++ A  FKGK+
Sbjct: 229 DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKKAAEGFKGKI 288

Query: 89  LFVYSQIYPKLKGQIFDYFGVT---CYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD 145
           LF++         +I ++FG+    C   R+I +     + K   + ELT   +  F   
Sbjct: 289 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYK-PESDELTAEKITQFCHH 347

Query: 146 FLGDKLR 152
           FL  K++
Sbjct: 348 FLEGKIK 354

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P09103|PDIA1_MOUSE Protein disulfide-isomerase OS=Mus musculus GN=P4hb PE=1 SV=2

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 8/127 (6%)

Query: 33  DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
           DFI  N++P +I ++ +T P I    +K   LL+L  +V D + K S F+  A  FKGK+
Sbjct: 229 DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSSFKRAAEGFKGKI 288

Query: 89  LFVYSQIYPKLKGQIFDYFGVT---CYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD 145
           LF++         +I ++FG+    C   R+I +     + K   + ELT   +  F   
Sbjct: 289 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYK-PESDELTAEKITEFCHR 347

Query: 146 FLGDKLR 152
           FL  K++
Sbjct: 348 FLEGKIK 354

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q2HWU2|PDIA1_MACFU Protein disulfide-isomerase OS=Macaca fuscata fuscata GN=P4HB PE=2 SV=1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 8/127 (6%)

Query: 33  DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
           DFI  N++P +I ++ +T P I    +K   LL+L  +V D + K S F+  A +FKGK+
Sbjct: 229 DFIKYNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKI 288

Query: 89  LFVYSQIYPKLKGQIFDYFGVT---CYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD 145
           LF++         +I ++FG+    C   R+I +     + K   + ELT   +  F   
Sbjct: 289 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYK-PESDELTAERITEFCHR 347

Query: 146 FLGDKLR 152
           FL  K++
Sbjct: 348 FLEGKIK 354

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Macaca fuscata fuscata (taxid: 9543)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q5R5B6|PDIA1_PONAB Protein disulfide-isomerase OS=Pongo abelii GN=P4HB PE=2 SV=1

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 8/127 (6%)

Query: 33  DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
           DFI  N++P +I ++ +T P I    +K   LL+L  +V D + K S F+  A +FKGK+
Sbjct: 227 DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKI 286

Query: 89  LFVYSQIYPKLKGQIFDYFGVT---CYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD 145
           LF++         +I ++FG+    C   R+I +     + K   + ELT   +  F   
Sbjct: 287 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYK-PESEELTAERITEFCHR 345

Query: 146 FLGDKLR 152
           FL  K++
Sbjct: 346 FLEGKIK 352

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Pongo abelii (taxid: 9601)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P07237|PDIA1_HUMAN Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 8/127 (6%)

Query: 33  DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
           DFI  N++P +I ++ +T P I    +K   LL+L  +V D + K S F+  A +FKGK+
Sbjct: 227 DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKI 286

Query: 89  LFVYSQIYPKLKGQIFDYFGVT---CYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD 145
           LF++         +I ++FG+    C   R+I +     + K   + ELT   +  F   
Sbjct: 287 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYK-PESEELTAERITEFCHR 345

Query: 146 FLGDKLR 152
           FL  K++
Sbjct: 346 FLEGKIK 352

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P21195|PDIA1_RABIT Protein disulfide-isomerase OS=Oryctolagus cuniculus GN=P4HB PE=2 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 8/127 (6%)

Query: 33  DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
           DFI  N++P +I ++ +T P I    +K   LL+L  +  D + K S F++ A  FKGK+
Sbjct: 228 DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPRSAADHDGKLSGFKQAAEGFKGKI 287

Query: 89  LFVYSQIYPKLKGQIFDYFGVT---CYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD 145
           LF++         +I ++FG+    C   R+I +     + K   + ELT   +  F   
Sbjct: 288 LFIFIDSDHADNQRILEFFGLKKEECPAVRLITLEEEMTKYK-PESDELTAEGITEFCQR 346

Query: 146 FLGDKLR 152
           FL  K++
Sbjct: 347 FLEGKIK 353

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Oryctolagus cuniculus (taxid: 9986)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
296086024	458	unnamed protein product [Vitis vinifera]	0.838	0.283	0.469	3e-21
147855039	578	hypothetical protein VITISV_036230 [Viti	0.864	0.231	0.455	3e-21
225449060	561	PREDICTED: protein disulfide isomerase-l	0.838	0.231	0.469	4e-21
225435313	577	PREDICTED: protein disulfide isomerase-l	0.825	0.221	0.435	8e-21
297746254	462	unnamed protein product [Vitis vinifera]	0.825	0.277	0.435	9e-21
28140231	447	protein disulphide isomerase, partial [E	0.838	0.290	0.443	7e-20
326531866	587	predicted protein [Hordeum vulgare subsp	0.858	0.226	0.411	6e-19
357472209	583	Protein disulfide isomerase L-2 [Medicag	0.838	0.222	0.383	1e-18
224104643	583	predicted protein [Populus trichocarpa]	0.864	0.229	0.415	2e-18
255578860	575	protein disulfide isomerase, putative [R	0.851	0.229	0.392	3e-18

>gi|296086024|emb|CBI31465.3| unnamed protein product [Vitis vinifera]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/132 (46%), Positives = 83/132 (62%), Gaps = 2/132 (1%)

Query: 23  DVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLK-LLWLFAAVHDSE-AKSIFQET 80
           D  F  S I +F+  NK P +I +++E++  I  +P+K  L LFA   DSE     FQE 
Sbjct: 171 DGQFIKSAIAEFVFANKHPLVIIFTKESSRQIFENPIKKQLLLFATSKDSENVLPQFQEA 230

Query: 81  ARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVK 140
           A+AFKGKL+FVY ++  K    + DYFGVT    RV+A       KKYVL+GELTL+++K
Sbjct: 231 AKAFKGKLIFVYVEMDNKDGKSVADYFGVTGDAPRVLAYTGNDDAKKYVLDGELTLTSIK 290

Query: 141 SFALDFLGDKLR 152
           SF  DFL DKL+
Sbjct: 291 SFGEDFLEDKLK 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855039|emb|CAN82379.1| hypothetical protein VITISV_036230 [Vitis vinifera]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 85/136 (62%), Gaps = 2/136 (1%)

Query: 19  FIFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLK-LLWLFAAVHDSE-AKSI 76
           F+ +D  F  S I +F+  NK P +  +++E++  I  +P+K  L LFA   DSE     
Sbjct: 287 FMSTDGQFIKSAIAEFVFANKHPLVXIFTKESSRQIFENPIKKQLLLFATSKDSENVLPQ 346

Query: 77  FQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTL 136
           FQE A+AFKGKL+FVY ++  K    + DYFGVT    RV+A       KKYVL+GELTL
Sbjct: 347 FQEAAKAFKGKLIFVYVEMDNKDGKSVADYFGVTGDAPRVLAYTGNDDAKKYVLDGELTL 406

Query: 137 SNVKSFALDFLGDKLR 152
           +++KSF  DFL DKL+
Sbjct: 407 TSIKSFGEDFLEDKLK 422

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449060|ref|XP_002275017.1| PREDICTED: protein disulfide isomerase-like 1-3-like isoform 1 [Vitis vinifera]

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/132 (46%), Positives = 83/132 (62%), Gaps = 2/132 (1%)

Query: 23  DVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLK-LLWLFAAVHDSE-AKSIFQET 80
           D  F  S I +F+  NK P +I +++E++  I  +P+K  L LFA   DSE     FQE 
Sbjct: 274 DGQFIKSAIAEFVFANKHPLVIIFTKESSRQIFENPIKKQLLLFATSKDSENVLPQFQEA 333

Query: 81  ARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVK 140
           A+AFKGKL+FVY ++  K    + DYFGVT    RV+A       KKYVL+GELTL+++K
Sbjct: 334 AKAFKGKLIFVYVEMDNKDGKSVADYFGVTGDAPRVLAYTGNDDAKKYVLDGELTLTSIK 393

Query: 141 SFALDFLGDKLR 152
           SF  DFL DKL+
Sbjct: 394 SFGEDFLEDKLK 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435313|ref|XP_002285136.1| PREDICTED: protein disulfide isomerase-like 1-4 isoform 1 [Vitis vinifera]

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 57/131 (43%), Positives = 87/131 (66%), Gaps = 3/131 (2%)

Query: 25  SFTISVIDDFISLNKIPPMITYSRETTPLILNSPLK-LLWLFAAVHDSE-AKSIFQETAR 82
           +FT S I +F+  NK+P + T++R++ PLI  SP+K  L LFA  +DSE     FQE A+
Sbjct: 289 NFTKSAIAEFVFANKLPLVTTFTRDSAPLIFESPIKKQLLLFATANDSEKVVPAFQEAAK 348

Query: 83  AFKGKLLFVYSQIYPKLKGQ-IFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKS 141
           +FKGK++FVY ++  +  G+ + DYFGVT    +V+A       +K++L+GE+TL  VK+
Sbjct: 349 SFKGKIIFVYVEMDNEEIGRPVSDYFGVTGDAPKVLAYTGNDDARKFILDGEVTLDKVKA 408

Query: 142 FALDFLGDKLR 152
           F  DFL DK++
Sbjct: 409 FGEDFLEDKVK 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746254|emb|CBI16310.3| unnamed protein product [Vitis vinifera]

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 87/131 (66%), Gaps = 3/131 (2%)

Query: 25  SFTISVIDDFISLNKIPPMITYSRETTPLILNSPLK-LLWLFAAVHDSE-AKSIFQETAR 82
           +FT S I +F+  NK+P + T++R++ PLI  SP+K  L LFA  +DSE     FQE A+
Sbjct: 174 NFTKSAIAEFVFANKLPLVTTFTRDSAPLIFESPIKKQLLLFATANDSEKVVPAFQEAAK 233

Query: 83  AFKGKLLFVYSQIYPKLKGQ-IFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKS 141
           +FKGK++FVY ++  +  G+ + DYFGVT    +V+A       +K++L+GE+TL  VK+
Sbjct: 234 SFKGKIIFVYVEMDNEEIGRPVSDYFGVTGDAPKVLAYTGNDDARKFILDGEVTLDKVKA 293

Query: 142 FALDFLGDKLR 152
           F  DFL DK++
Sbjct: 294 FGEDFLEDKVK 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28140231|gb|AAO26314.1| protein disulphide isomerase, partial [Elaeis guineensis]

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/133 (44%), Positives = 86/133 (64%), Gaps = 3/133 (2%)

Query: 23  DVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLK-LLWLFAAVHDSE-AKSIFQET 80
           D  FT + I DFI  NK+P + T++RET PLI ++P+K  + LFA  +D+E     F E 
Sbjct: 155 DGQFTKTAIVDFIFANKLPLVNTFTRETAPLIFDNPIKKQILLFAVSNDTEKVMPAFPEA 214

Query: 81  ARAFKGKLLFVYSQIYPKLKGQ-IFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNV 139
           A+ FKGKL+FV+ +   +  G+ + DYFGVT +  +V+A       KKY+L+GE+TL +V
Sbjct: 215 AKLFKGKLIFVFVERDNEDVGKPVSDYFGVTEHGPKVLAYTGNEDAKKYILDGEVTLDSV 274

Query: 140 KSFALDFLGDKLR 152
           + FA  FL DKL+
Sbjct: 275 EKFAEGFLEDKLK 287

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326531866|dbj|BAK01309.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 58/141 (41%), Positives = 86/141 (60%), Gaps = 8/141 (5%)

Query: 14  LSVFCFIFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEA 73
           L+VF     D  F  S I +F+S NKIP + T ++ET P I ++P+K   L  AV    +
Sbjct: 287 LTVF-----DGEFRASAIAEFVSANKIPLITTLTQETAPAIFDNPIKKQILLFAVAKESS 341

Query: 74  K--SIFQETARAFKGKLLFVYSQIYPKLKGQ-IFDYFGVTCYTSRVIAVASIRKRKKYVL 130
           K   I +ETA++FKGKLLFV+ +   +  G+ + DYFG+T   + V+A       KK+  
Sbjct: 342 KFLPILKETAKSFKGKLLFVFVERDNEEVGEPVADYFGITGQETTVLAYTGNEDAKKFFF 401

Query: 131 NGELTLSNVKSFALDFLGDKL 151
           +GE++L ++K+FA DFL DKL
Sbjct: 402 SGEISLDSIKAFAQDFLEDKL 422

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357472209|ref|XP_003606389.1| Protein disulfide isomerase L-2 [Medicago truncatula] gi|355507444|gb|AES88586.1| Protein disulfide isomerase L-2 [Medicago truncatula]

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/133 (38%), Positives = 85/133 (63%), Gaps = 3/133 (2%)

Query: 23  DVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEAK--SIFQET 80
           D  F  + I +F+S NK+P +  ++RE+ P+I  SP+K   L     +  AK  ++FQE 
Sbjct: 292 DGQFVKAEIANFVSSNKLPLVNIFTRESAPVIFESPIKKQLLLFVTSNDTAKFITVFQEA 351

Query: 81  ARAFKGKLLFVYSQIYPKLKGQ-IFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNV 139
           A+ FKGKL+FV+ ++  +  G+ + DYFG++  T +V+A       +K++L+GE+T+ N+
Sbjct: 352 AKLFKGKLIFVHVEMDNEDVGKPVADYFGLSGNTPKVLAFTGNEDGRKFLLDGEVTIDNI 411

Query: 140 KSFALDFLGDKLR 152
           K+F  DFL DKL+
Sbjct: 412 KAFGEDFLADKLK 424

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104643|ref|XP_002313512.1| predicted protein [Populus trichocarpa] gi|222849920|gb|EEE87467.1| predicted protein [Populus trichocarpa]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/142 (41%), Positives = 89/142 (62%), Gaps = 8/142 (5%)

Query: 14  LSVFCFIFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLK-LLWLFAAVHDSE 72
           LSVF     D +F+ S I +F+  NK+P +  ++RE+ PLI  S +K  L LFA  +DSE
Sbjct: 290 LSVF-----DGNFSKSEIAEFVFANKLPLVTIFTRESAPLIFESTIKKQLLLFAISNDSE 344

Query: 73  -AKSIFQETARAFKGKLLFVYSQIYPKLKGQ-IFDYFGVTCYTSRVIAVASIRKRKKYVL 130
               IFQE AR FKGKL+FVY ++  +  G+ + +YFG++    +V+A       KK+V 
Sbjct: 345 KVVPIFQEAARLFKGKLIFVYVEMDNEDVGKPVSEYFGISGTAPKVLAYTGNDDAKKFVF 404

Query: 131 NGELTLSNVKSFALDFLGDKLR 152
           +G++TL  +K+F  DF+ DKL+
Sbjct: 405 DGDVTLDKIKAFGEDFIEDKLK 426

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578860|ref|XP_002530284.1| protein disulfide isomerase, putative [Ricinus communis] gi|223530182|gb|EEF32091.1| protein disulfide isomerase, putative [Ricinus communis]

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 85/135 (62%), Gaps = 3/135 (2%)

Query: 21  FSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLK-LLWLFAAVHDSE-AKSIFQ 78
           + D +F+ S I DF+  NK+P + T++RE+ P I  SP+K  L LFA  ++SE    +FQ
Sbjct: 282 YFDGNFSKSEIADFVFANKLPLVTTFTRESAPSIFESPIKKQLLLFATSNNSEKVLPVFQ 341

Query: 79  ETARAFKGKLLFVYSQIYPKLKGQ-IFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLS 137
           + A+ FKGKL+FVY ++  +  G+ + DYFG+    S+++        KK+V + E+T+ 
Sbjct: 342 DAAKLFKGKLIFVYVELDNEEVGKPVADYFGIVGDASQLLGYTGNDDGKKFVFDAEITMD 401

Query: 138 NVKSFALDFLGDKLR 152
            +K+F  DFL DKL+
Sbjct: 402 KIKAFGEDFLEDKLK 416

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:2082712	579	PDIL1-3 "PDI-like 1-3" [Arabid	0.838	0.224	0.398	4.4e-19
TAIR|locus:2175811	597	PDIL1-4 "PDI-like 1-4" [Arabid	0.838	0.217	0.368	5.9e-15
UNIPROTKB|A6H7J6	510	P4HB "Prolyl 4-hydroxylase, be	0.767	0.233	0.314	1.3e-08
UNIPROTKB|P05307	510	P4HB "Protein disulfide-isomer	0.767	0.233	0.314	1.3e-08
UNIPROTKB|F1PL97	510	P4HB "Uncharacterized protein"	0.761	0.231	0.312	2.2e-08
RGD|3244	509	P4hb "prolyl 4-hydroxylase, be	0.767	0.233	0.307	2.8e-08
MGI|MGI:97464	509	P4hb "prolyl 4-hydroxylase, be	0.767	0.233	0.307	3.6e-08
UNIPROTKB|I3L2P8	450	P4HB "Protein disulfide-isomer	0.761	0.262	0.312	3.7e-08
UNIPROTKB|F5H8J2	451	P4HB "Uncharacterized protein"	0.761	0.261	0.312	3.8e-08
UNIPROTKB|H7BZ94	464	P4HB "Protein disulfide-isomer	0.761	0.254	0.312	3.9e-08

TAIR|locus:2082712 PDIL1-3 "PDI-like 1-3" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 4.4e-19, P = 4.4e-19
 Identities = 53/133 (39%), Positives = 84/133 (63%)

Query:    23 DVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLK-LLWLFAAVHDSEAK-SIFQET 80
             D +FT + I +F+S NK+P +I ++RE   LI  S +K  L LFA  ++SE      +E 
Sbjct:   291 DGNFTKTAIAEFVSANKVPLVINFTREGASLIFESSVKNQLILFAKANESEKHLPTLREV 350

Query:    81 ARAFKGKLLFVYSQIYPKLKGQ-IFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNV 139
             A++FKGK +FVY Q+  +  G+ +  +FGVT    +V+        +K++L+GELT++N+
Sbjct:   351 AKSFKGKFVFVYVQMDNEDYGEAVSGFFGVTGAAPKVLVYTGNEDMRKFILDGELTVNNI 410

Query:   140 KSFALDFLGDKLR 152
             K+ A DFL DKL+
Sbjct:   411 KTLAEDFLADKLK 423

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2175811 PDIL1-4 "PDI-like 1-4" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 5.9e-15, P = 5.9e-15
 Identities = 49/133 (36%), Positives = 74/133 (55%)

Query:    23 DVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKL-LWLFAAVHDSE-AKSIFQET 80
             D  F  S +  F+S NK+  +  ++RET P I  S +K  L LF   ++SE   + FQE 
Sbjct:   295 DGEFVKSALVSFVSANKLALVSVFTRETAPEIFESAIKKQLLLFVTKNESEKVLTEFQEA 354

Query:    81 ARAFKGKLLFVYSQIYPKLKGQ-IFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNV 139
             A++FKGKL+FV   +  +  G+ + +YFGV+    ++I        KKY  +GE+    +
Sbjct:   355 AKSFKGKLIFVSVDLDNEDYGKPVAEYFGVSGNGPKLIGYTGNEDPKKYFFDGEIQSDKI 414

Query:   140 KSFALDFLGDKLR 152
             K F  DFL DKL+
Sbjct:   415 KIFGEDFLNDKLK 427

GO:0005576 "extracellular region" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB|A6H7J6 P4HB "Prolyl 4-hydroxylase, beta subunit" [Bos taurus (taxid:9913)]

 Score = 139 (54.0 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 40/127 (31%), Positives = 66/127 (51%)

Query:    33 DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
             DFI  N++P +I ++ +T P I    +K   LL+L  +V D E K S F++ A +FKGK+
Sbjct:   229 DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYEGKLSNFKKAAESFKGKI 288

Query:    89 LFVYSQIYPKLKGQIFDYFGVT---CYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD 145
             LF++         +I ++FG+    C   R+I +     + K   + ELT   +  F   
Sbjct:   289 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPE-SDELTAEKITEFCHR 347

Query:   146 FLGDKLR 152
             FL  K++
Sbjct:   348 FLEGKIK 354

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|P05307 P4HB "Protein disulfide-isomerase" [Bos taurus (taxid:9913)]

 Score = 139 (54.0 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 40/127 (31%), Positives = 66/127 (51%)

Query:    33 DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
             DFI  N++P +I ++ +T P I    +K   LL+L  +V D E K S F++ A +FKGK+
Sbjct:   229 DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYEGKLSNFKKAAESFKGKI 288

Query:    89 LFVYSQIYPKLKGQIFDYFGVT---CYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD 145
             LF++         +I ++FG+    C   R+I +     + K   + ELT   +  F   
Sbjct:   289 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPE-SDELTAEKITEFCHR 347

Query:   146 FLGDKLR 152
             FL  K++
Sbjct:   348 FLEGKIK 354

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|F1PL97 P4HB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 137 (53.3 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 40/128 (31%), Positives = 67/128 (52%)

Query:    33 DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
             DFI  N++P +I ++ +T P I    +K   LL+L  +V D ++K S F++ A  FKGK+
Sbjct:   229 DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDSKLSNFKKAAERFKGKI 288

Query:    89 LFVYSQIYPKLKGQIFDYFGVT---CYTSRVIAVASIRKRKKYVLNG-ELTLSNVKSFAL 144
             LF++         +I ++FG+    C   R+I +    +  KY     ELT   ++ F  
Sbjct:   289 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEE--EMTKYKPESTELTAEKIEDFCH 346

Query:   145 DFLGDKLR 152
              FL  K++
Sbjct:   347 RFLEGKIK 354

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

RGD|3244 P4hb "prolyl 4-hydroxylase, beta polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 136 (52.9 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 39/127 (30%), Positives = 65/127 (51%)

Query:    33 DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
             DFI  N++P +I ++ +T P I    +K   LL+L  +V D + K S F++ A  FKGK+
Sbjct:   229 DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKKAAEGFKGKI 288

Query:    89 LFVYSQIYPKLKGQIFDYFGVT---CYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD 145
             LF++         +I ++FG+    C   R+I +     + K   + ELT   +  F   
Sbjct:   289 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPE-SDELTAEKITQFCHH 347

Query:   146 FLGDKLR 152
             FL  K++
Sbjct:   348 FLEGKIK 354

GO:0003756 "protein disulfide isomerase activity" evidence=IMP

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006457 "protein folding" evidence=IMP

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA;ISO

GO:0042470 "melanosome" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

MGI|MGI:97464 P4hb "prolyl 4-hydroxylase, beta polypeptide" [Mus musculus (taxid:10090)]

 Score = 135 (52.6 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 39/127 (30%), Positives = 64/127 (50%)

Query:    33 DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
             DFI  N++P +I ++ +T P I    +K   LL+L  +V D + K S F+  A  FKGK+
Sbjct:   229 DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSSFKRAAEGFKGKI 288

Query:    89 LFVYSQIYPKLKGQIFDYFGVT---CYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD 145
             LF++         +I ++FG+    C   R+I +     + K   + ELT   +  F   
Sbjct:   289 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPE-SDELTAEKITEFCHR 347

Query:   146 FLGDKLR 152
             FL  K++
Sbjct:   348 FLEGKIK 354

GO:0003756 "protein disulfide isomerase activity" evidence=ISO

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006457 "protein folding" evidence=ISO

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISO

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA;ISO

UNIPROTKB|I3L2P8 P4HB "Protein disulfide-isomerase" [Homo sapiens (taxid:9606)]

 Score = 134 (52.2 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 40/128 (31%), Positives = 65/128 (50%)

Query:    33 DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
             DFI  N++P +I ++ +T P I    +K   LL+L  +V D + K S F+  A +FKGK+
Sbjct:   169 DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKI 228

Query:    89 LFVYSQIYPKLKGQIFDYFGVT---CYTSRVIAVASIRKRKKYVLNGE-LTLSNVKSFAL 144
             LF++         +I ++FG+    C   R+I +    +  KY    E LT   +  F  
Sbjct:   229 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEE--EMTKYKPESEELTAERITEFCH 286

Query:   145 DFLGDKLR 152
              FL  K++
Sbjct:   287 RFLEGKIK 294

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|F5H8J2 P4HB "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 134 (52.2 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 40/128 (31%), Positives = 65/128 (50%)

Query:    33 DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
             DFI  N++P +I ++ +T P I    +K   LL+L  +V D + K S F+  A +FKGK+
Sbjct:   170 DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKI 229

Query:    89 LFVYSQIYPKLKGQIFDYFGVT---CYTSRVIAVASIRKRKKYVLNGE-LTLSNVKSFAL 144
             LF++         +I ++FG+    C   R+I +    +  KY    E LT   +  F  
Sbjct:   230 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEE--EMTKYKPESEELTAERITEFCH 287

Query:   145 DFLGDKLR 152
              FL  K++
Sbjct:   288 RFLEGKIK 295

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|H7BZ94 P4HB "Protein disulfide-isomerase" [Homo sapiens (taxid:9606)]

 Score = 134 (52.2 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 40/128 (31%), Positives = 65/128 (50%)

Query:    33 DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
             DFI  N++P +I ++ +T P I    +K   LL+L  +V D + K S F+  A +FKGK+
Sbjct:   183 DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKI 242

Query:    89 LFVYSQIYPKLKGQIFDYFGVT---CYTSRVIAVASIRKRKKYVLNGE-LTLSNVKSFAL 144
             LF++         +I ++FG+    C   R+I +    +  KY    E LT   +  F  
Sbjct:   243 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEE--EMTKYKPESEELTAERITEFCH 300

Query:   145 DFLGDKLR 152
              FL  K++
Sbjct:   301 RFLEGKIK 308

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018195001 SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (555 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	155
cd02982	103	cd02982, PDI_b'_family, Protein Disulfide Isomeras	4e-10
pfam13848	183	pfam13848, Thioredoxin_6, Thioredoxin-like domain	6e-10
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	2e-08

>gnl|CDD|239280 cd02982, PDI_b'_family, Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 53.4 bits (129), Expect = 4e-10
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 6/95 (6%)

Query: 57  SPLKLLWLFAAVHDS---EAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYT 113
           S   LL LF    DS   E +  F+E A+ FKGKLLFV         G+  +YFG+    
Sbjct: 11  SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVD--ADDFGRHLEYFGLKEED 68

Query: 114 SRVIAVASIRKRKKYVL-NGELTLSNVKSFALDFL 147
             VIA+ ++   KKY++   ELT  +++ F  DFL
Sbjct: 69  LPVIAIINLSDGKKYLMPEEELTAESLEEFVEDFL 103

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contains only redox-inactive TRX-like (b and b') domains. The redox inactive domains are implicated in substrate recognition with the b' domain serving as the primary substrate binding site. Only the b' domain is necessary for the binding of small peptide substrates. In addition to the b' domain, other domains are required for the binding of larger polypeptide substrates. The b' domain is also implicated in chaperone activity. Length = 103

>gnl|CDD|222416 pfam13848, Thioredoxin_6, Thioredoxin-like domain

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 5/125 (4%)

Query: 21  FSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDS--EAKSIFQ 78
             +   T   +  FI  N +P +  ++ E    +  S   LL       +   + K+  +
Sbjct: 58  PGEDKTTFDDLKKFIQKNSLPLVGEFTPENAEELFESGKPLLLFIKKDSEETEKLKNRVE 117

Query: 79  ETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAV-ASIRKRKKYVLNGELTLS 137
           E A+ FKGK+ F       K  G++ +Y G++     VI +  S   +KKY    E +  
Sbjct: 118 EVAKKFKGKINFATVDG--KSFGRVLEYLGLSSADLPVIVIVDSASHKKKYFPEDEFSPE 175

Query: 138 NVKSF 142
           ++K F
Sbjct: 176 SLKEF 180

Length = 183

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 8/132 (6%)

Query: 26  FTISVIDDFISLNKIPPMITYSRETTPLILNS-PLKLLWLFAAVHDS---EAKSIFQETA 81
             +S ++ FI    +P +  +++ET      S PL +L+           E ++ F E A
Sbjct: 202 TDVSDLEKFIRAESLPLVGEFTQETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLEAA 261

Query: 82  RAFKGK-LLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNG-ELTLSNV 139
           + F+GK + F  +    +  G+  +YFG+       +A+  +   KKY ++  E +  N+
Sbjct: 262 KKFRGKFVNFAVADE--EDFGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENL 319

Query: 140 KSFALDFLGDKL 151
           ++F  DFL  KL
Sbjct: 320 EAFVKDFLDGKL 331

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	99.88
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.87
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.81
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	99.78
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	99.73
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.71
PTZ00102	477	disulphide isomerase; Provisional	99.69
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.59
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.54
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.22
cd03071	116	PDI_b'_NRX PDIb' family, NRX subgroup, redox inact	98.82
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	98.7
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	98.6
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	98.59
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	98.57
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	98.55
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	98.51
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	98.5
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	98.39
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	98.35
KOG4277	468	consensus Uncharacterized conserved protein, conta	98.33
PRK10996	139	thioredoxin 2; Provisional	98.3
PRK09381	109	trxA thioredoxin; Provisional	98.3
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	98.25
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	98.25
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	98.24
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	98.19
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	98.18
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	98.16
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	98.15
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	98.13
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	98.1
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	98.1
PTZ00102	477	disulphide isomerase; Provisional	98.09
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	98.07
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	98.01
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	97.95
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	97.94
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	97.93
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	97.9
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	97.89
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	97.88
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	97.87
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	97.86
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	97.85
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	97.71
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	97.69
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	97.67
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.67
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	97.66
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	97.6
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	97.58
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	97.53
cd02947	93	TRX_family TRX family; composed of two groups: Gro	97.53
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	97.51
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.49
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	97.46
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	97.39
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	97.32
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	97.31
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	97.3
PLN02309	457	5'-adenylylsulfate reductase	97.18
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	97.14
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	97.12
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	97.08
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	97.08
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	97.01
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	96.68
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	96.66
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	96.66
PTZ00051	98	thioredoxin; Provisional	96.65
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	96.56
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	96.48
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	96.41
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	96.36
smart00594	122	UAS UAS domain.	96.2
PHA02278	103	thioredoxin-like protein	96.19
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	96.12
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	96.11
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	95.79
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	95.7
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	95.61
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	95.22
KOG4277	468	consensus Uncharacterized conserved protein, conta	94.97
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	94.66
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	94.42
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	94.22
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	93.87
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	93.59
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	93.41
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	92.96
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	92.59
PF13728	215	TraF: F plasmid transfer operon protein	91.98
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	91.45
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	90.85
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	90.23
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	90.15
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	90.15
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	90.11
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	90.01
PTZ00062	204	glutaredoxin; Provisional	88.72
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	88.54
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	88.15
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	87.86
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	87.08
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	86.93
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	84.26
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	82.64
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	82.23
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	81.71

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.88  E-value=4e-22  Score=136.83  Aligned_cols=106  Identities=25%  Similarity=0.235  Sum_probs=94.6

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecCChhH-HHHHHHHHHh---hcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVHDSEA-KSIFQETARA---FKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~~~~~-~~~~~~vA~~---~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      |.++|++|+..|++++.|..++|++.++.+. .+.++++|++   +|+++.|+++|++.  +.+.+++||++++++|+++
T Consensus         1 ~~e~t~e~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~--~~~~~~~fgl~~~~~P~i~   78 (111)
T cd03072           1 VREITFENAEELTEEGLPFLILFHDKDDLESLKEFKQAVARQLISEKGAINFLTADGDK--FRHPLLHLGKTPADLPVIA   78 (111)
T ss_pred             CcccccccHHHHhcCCCCeEEEEecchHHHHHHHHHHHHHHHHHhcCceEEEEEEechH--hhhHHHHcCCCHhHCCEEE
Confidence            5789999999999999999555555556777 9999999999   99999999999997  5679999999988899999


Q ss_pred             EEecCCCeeec-CCCCCCHHHHHHHHHHHHcCC
Q 031686          119 VASIRKRKKYV-LNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       119 i~~~~~~~kY~-~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      |.+.+++.||+ +++++|+++|.+|+++|++||
T Consensus        79 i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk  111 (111)
T cd03072          79 IDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK  111 (111)
T ss_pred             EEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence            99986557998 677899999999999999996

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.87  E-value=5.6e-21  Score=140.17  Aligned_cols=125  Identities=29%  Similarity=0.428  Sum_probs=106.7

Q ss_pred             EEeccCC-cCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCce-EEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEE
Q 031686           19 FIFSDVS-FTISVIDDFISLNKIPPMITYSRETTPLILNSPLKL-LWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYS   93 (155)
Q Consensus        19 ~~~y~g~-~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~-v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~v   93 (155)
                      ...|+|+ ++.++|.+||+.+++|+|.++|++|+..++..+.|. +++|.+.+  ..+. .+.++++|+++++++.|+|+
T Consensus        54 ~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~  133 (184)
T PF13848_consen   54 PVVYDGDKFTPEELKKFIKKNSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYV  133 (184)
T ss_dssp             EEEESSSTTSHHHHHHHHHHHSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEE
T ss_pred             ceecccccCCHHHHHHHHHHhccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEe
Confidence            3567787 899999999999999999999999999999999885 66665443  2456 88899999999999999999


Q ss_pred             eCCCcchhhhhhhhCCCCCCcceEEEEecCCCeee-cCCCCCCHHHHHHHHHH
Q 031686           94 QIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKY-VLNGELTLSNVKSFALD  145 (155)
Q Consensus        94 d~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY-~~~~~~t~~~I~~Fi~~  145 (155)
                      |.+.  +.+++++||+++.++|+++|++..++++| .+.++++.++|.+|+++
T Consensus       134 d~~~--~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  134 DADD--FPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             ETTT--THHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             ehHH--hHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            9995  68899999999889999999997666544 34578999999999986

...

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=2.5e-19  Score=148.36  Aligned_cols=146  Identities=29%  Similarity=0.391  Sum_probs=120.2

Q ss_pred             CceeeeeeeeEE--EeccCCcCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCce-EEEEeecC--ChhH-HHHHHHHH
Q 031686            8 GRFIHALSVFCF--IFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKL-LWLFAAVH--DSEA-KSIFQETA   81 (155)
Q Consensus         8 ~~~~~~~~~~~~--~~y~g~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~-v~lf~~~~--~~~~-~~~~~~vA   81 (155)
                      ++++|..+=.+-  ..|+|+++.+.|.+||..+++|+|+++|+++...++.+..+. +++|.+..  +++. ++.++++|
T Consensus       202 ~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vA  281 (493)
T KOG0190|consen  202 TFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVA  281 (493)
T ss_pred             cceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHH
Confidence            345665555443  355789999999999999999999999999999999997777 66666554  5778 99999999


Q ss_pred             HhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCC-CCCHHHHHHHHHHHHcCCCccCC
Q 031686           82 RAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNG-ELTLSNVKSFALDFLGDKLRNQK  155 (155)
Q Consensus        82 ~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~-~~t~~~I~~Fi~~f~~Gkl~p~~  155 (155)
                      ++||+++.|+++|...  +.+.+++||++.+..|..++.....+.||++++ +++.++|++|+++|++|+++||.
T Consensus       282 k~f~~~l~Fi~~d~e~--~~~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~  354 (493)
T KOG0190|consen  282 KKFKGKLRFILIDPES--FARVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHL  354 (493)
T ss_pred             HhcccceEEEEEChHH--hhHHHHhcCcccccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCcccccc
Confidence            9999999999997765  678999999998888833344434567999885 59999999999999999999983

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=99.78  E-value=1.1e-18  Score=119.62  Aligned_cols=102  Identities=19%  Similarity=0.328  Sum_probs=83.9

Q ss_pred             eEecCCCchhhhhcCCCceEEEEee----cCChhH-HHHHHHHHHhhc-CceEEEEEeCCCcchhhhhhhhCCCCCC--c
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAA----VHDSEA-KSIFQETARAFK-GKLLFVYSQIYPKLKGQIFDYFGVTCYT--S  114 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~----~~~~~~-~~~~~~vA~~~~-~~i~F~~vd~~~~~~~~~~~~~gl~~~~--~  114 (155)
                      |+++|.+|+..++..+..++++-.+    .++.+. ++.++++|+++| +++.|+|+|.+.  +.+.+++||+++++  .
T Consensus         1 v~~~~~en~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~--~~~~l~~fgl~~~~~~~   78 (111)
T cd03073           1 VGHRTKDNRAQFTKKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKED--FSHELEEFGLDFSGGEK   78 (111)
T ss_pred             CCeeccchHHHhccCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHH--HHHHHHHcCCCcccCCC
Confidence            5789999999998666433333221    123567 999999999999 799999999996  66799999999877  9


Q ss_pred             ceEEEEecCCCeeecCCCCC-CHHHHHHHHHHHH
Q 031686          115 RVIAVASIRKRKKYVLNGEL-TLSNVKSFALDFL  147 (155)
Q Consensus       115 P~v~i~~~~~~~kY~~~~~~-t~~~I~~Fi~~f~  147 (155)
                      |+++|++.+ ++||++++++ |.++|.+|+++|+
T Consensus        79 P~~~i~~~~-~~KY~~~~~~~t~e~i~~F~~~f~  111 (111)
T cd03073          79 PVVAIRTAK-GKKYVMEEEFSDVDALEEFLEDFF  111 (111)
T ss_pred             CEEEEEeCC-CCccCCCcccCCHHHHHHHHHHhC
Confidence            999999975 4799988889 9999999999984

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.73  E-value=7.6e-17  Score=113.50  Aligned_cols=109  Identities=15%  Similarity=0.237  Sum_probs=88.5

Q ss_pred             CCeEecCCCch-hhhhcCCCce-EEEEeecC------ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcchhhhhhhhCCC
Q 031686           41 PPMITYSRETT-PLILNSPLKL-LWLFAAVH------DSEA-KSIFQETARAFKGK-LLFVYSQIYPKLKGQIFDYFGVT  110 (155)
Q Consensus        41 P~v~e~~~~~~-~~i~~~~~~~-v~lf~~~~------~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~~~~~~~~~gl~  110 (155)
                      |-|.+++.++. ...... +.+ ++.|.+..      +.++ .+.++++|++||++ +.|+|+|++.  +..++++||++
T Consensus         2 ~~~~~l~~~~~~~~~C~~-~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~--~~~~~~~fgl~   78 (130)
T cd02983           2 PEIIELTSEDVFEETCEE-KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA--QLDLEEALNIG   78 (130)
T ss_pred             CceEEecCHHHHHhhccC-CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc--cHHHHHHcCCC
Confidence            56788886544 445544 356 66666531      2456 88999999999999 9999999997  56799999999


Q ss_pred             CCCcceEEEEecCCCeeec-CCCCCCHHHHHHHHHHHHcCCCcc
Q 031686          111 CYTSRVIAVASIRKRKKYV-LNGELTLSNVKSFALDFLGDKLRN  153 (155)
Q Consensus       111 ~~~~P~v~i~~~~~~~kY~-~~~~~t~~~I~~Fi~~f~~Gkl~p  153 (155)
                      +++.|++++++.+.+ ||. +.+++|.++|.+|+++|++|++..
T Consensus        79 ~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~  121 (130)
T cd02983          79 GFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGRGPT  121 (130)
T ss_pred             ccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcCCccc
Confidence            888999999998655 997 678999999999999999999864

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.71  E-value=2.4e-16  Score=130.31  Aligned_cols=131  Identities=26%  Similarity=0.448  Sum_probs=111.8

Q ss_pred             eccCCc--CHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCceEEEEeecC-C---hhH-HHHHHHHHHhhcC-ceEEEE
Q 031686           21 FSDVSF--TISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVH-D---SEA-KSIFQETARAFKG-KLLFVY   92 (155)
Q Consensus        21 ~y~g~~--~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~-~---~~~-~~~~~~vA~~~~~-~i~F~~   92 (155)
                      .|+|+.  +.++|.+||..+++|++.+++.+++..++..+ |.+++|...+ +   .+. .+.++++|+++++ .+.|++
T Consensus       195 ~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~  273 (462)
T TIGR01130       195 KVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAV  273 (462)
T ss_pred             cccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEE
Confidence            466665  56899999999999999999999999999887 7766665543 2   256 8899999999997 899999


Q ss_pred             EeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCC-CCCHHHHHHHHHHHHcCCCccC
Q 031686           93 SQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNG-ELTLSNVKSFALDFLGDKLRNQ  154 (155)
Q Consensus        93 vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~-~~t~~~I~~Fi~~f~~Gkl~p~  154 (155)
                      +|...  +.++++.||++...+|+++|.+..+..+|.+.+ +++.++|.+|++++++|+++|+
T Consensus       274 ~d~~~--~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~  334 (462)
T TIGR01130       274 ADEED--FGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPY  334 (462)
T ss_pred             ecHHH--hHHHHHHcCCCccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCee
Confidence            99886  788999999998789999999976435788876 7999999999999999999985

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=99.69  E-value=4e-16  Score=130.01  Aligned_cols=125  Identities=19%  Similarity=0.281  Sum_probs=104.7

Q ss_pred             CCcCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCceEEEEeecCChhH-HHHHHHHHHhhcCceEEEEEeCCCcchh-
Q 031686           24 VSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEA-KSIFQETARAFKGKLLFVYSQIYPKLKG-  101 (155)
Q Consensus        24 g~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~-  101 (155)
                      +..+.++|.+||..+++|++.++|.+++..++..+.++++++...++.+. .+.++++|+++++++.|+|+|++.  +. 
T Consensus       215 ~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~--~~~  292 (477)
T PTZ00102        215 MGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFCGTTEDYDKYKSVVRKVARKLREKYAFVWLDTEQ--FGS  292 (477)
T ss_pred             CCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEecCHHHHHHHHHHHHHHHHhccCceEEEEEechh--cch
Confidence            44588999999999999999999999999999998766655544445566 889999999999999999999996  44 


Q ss_pred             hhhhhhCCCCCCcceEEEEecCCCeeecCCCC----CCHHHHHHHHHHHHcCCCccC
Q 031686          102 QIFDYFGVTCYTSRVIAVASIRKRKKYVLNGE----LTLSNVKSFALDFLGDKLRNQ  154 (155)
Q Consensus       102 ~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~----~t~~~I~~Fi~~f~~Gkl~p~  154 (155)
                      ++++.||++.  +|++++.+.. + +|.++++    ++.++|.+|++++.+|+++|+
T Consensus       293 ~~~~~~gi~~--~P~~~i~~~~-~-~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~  345 (477)
T PTZ00102        293 HAKEHLLIEE--FPGLAYQSPA-G-RYLLPPAKESFDSVEALIEFFKDVEAGKVEKS  345 (477)
T ss_pred             hHHHhcCccc--CceEEEEcCC-c-ccCCCccccccCCHHHHHHHHHHHhCCCCCcc
Confidence            4889999974  8999888742 3 6766532    789999999999999999986

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.59  E-value=8e-15  Score=114.36  Aligned_cols=129  Identities=22%  Similarity=0.261  Sum_probs=108.2

Q ss_pred             eccCCcC-HHHHHHHHHhCCCCCeEecCCCchhhhhcCCCceEEEEeecCChhHHHHHH-HHHHhhcC---ceEEEEEeC
Q 031686           21 FSDVSFT-ISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEAKSIFQ-ETARAFKG---KLLFVYSQI   95 (155)
Q Consensus        21 ~y~g~~~-~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~~~~~~~~~~-~vA~~~~~---~i~F~~vd~   95 (155)
                      .|.|+++ .++|+.||.+.+.|+|.|+|-+|++.+-+.+.|.+++|..++|.+..+.|. .+|++.-+   .+.|+.+|+
T Consensus       189 ~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflILf~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG  268 (375)
T KOG0912|consen  189 EFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLILFRKKDDKESEKIFKNAIARELDDETLAINFLTADG  268 (375)
T ss_pred             ccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEEEecCCcccHHHHHHHHHHHHhhhhhhccceeecCc
Confidence            5899984 699999999999999999999999999999999999999887643344555 56666543   388999999


Q ss_pred             CCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCC--C-CCHHHHHHHHHHHHcCCCcc
Q 031686           96 YPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNG--E-LTLSNVKSFALDFLGDKLRN  153 (155)
Q Consensus        96 ~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~--~-~t~~~I~~Fi~~f~~Gkl~p  153 (155)
                      +.  +.+.+.+||-+++++|.++|-...  ..|+++.  + ..+..|++|+.|..+|||.+
T Consensus       269 ~~--f~hpL~HlgKs~~DLPviaIDsF~--Hmylfp~f~di~~pGkLkqFv~DL~sgklHr  325 (375)
T KOG0912|consen  269 KV--FKHPLRHLGKSPDDLPVIAIDSFR--HMYLFPDFNDINIPGKLKQFVADLHSGKLHR  325 (375)
T ss_pred             ce--ecchHHHhCCCcccCcEEEeeccc--eeeecCchhhhcCccHHHHHHHHHhCchhhH
Confidence            96  889999999999999999987764  4677652  4 57889999999999999864

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.54  E-value=6.4e-14  Score=93.76  Aligned_cols=97  Identities=38%  Similarity=0.520  Sum_probs=79.5

Q ss_pred             CchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCC
Q 031686           49 ETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKR  125 (155)
Q Consensus        49 ~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~  125 (155)
                      +++..+...+.|.+++|....  +.+. ...++++|+++++++.|+|+|.++  +.++++.||+..+..|++++++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~--~~~~~~~~~i~~~~~P~~~~~~~~~~   80 (103)
T cd02982           3 ETFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD--FGRHLEYFGLKEEDLPVIAIINLSDG   80 (103)
T ss_pred             hHHhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh--hHHHHHHcCCChhhCCEEEEEecccc
Confidence            455555555677888887664  3466 889999999999999999999997  67899999998667999999998656


Q ss_pred             eeecCCC-CCCHHHHHHHHHHHH
Q 031686          126 KKYVLNG-ELTLSNVKSFALDFL  147 (155)
Q Consensus       126 ~kY~~~~-~~t~~~I~~Fi~~f~  147 (155)
                      ++|.+.+ .++.++|.+|+++++
T Consensus        81 ~k~~~~~~~~~~~~l~~fi~~~~  103 (103)
T cd02982          81 KKYLMPEEELTAESLEEFVEDFL  103 (103)
T ss_pred             cccCCCccccCHHHHHHHHHhhC
Confidence            7887764 569999999999874

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.22  E-value=5.4e-10  Score=88.93  Aligned_cols=135  Identities=17%  Similarity=0.164  Sum_probs=90.9

Q ss_pred             eeEEEecc-------C-CcCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCce--EEEEeecCC--hhH-HHHHHHHHH
Q 031686           16 VFCFIFSD-------V-SFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKL--LWLFAAVHD--SEA-KSIFQETAR   82 (155)
Q Consensus        16 ~~~~~~y~-------g-~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~--v~lf~~~~~--~~~-~~~~~~vA~   82 (155)
                      |.+|..|.       | +.+.++|++||+.|..|....++++++...+..+..-  ++.|++.++  .-+ .+.++++|+
T Consensus       216 v~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~  295 (383)
T PF01216_consen  216 VDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVAR  295 (383)
T ss_dssp             EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHH
T ss_pred             eeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHH
Confidence            55566662       2 4688999999999999999999999998899887533  777887654  345 889999999


Q ss_pred             hhcC--ceEEEEEeCCCcchhhhh----hhhCCCCCCcceEEEEecCCC--eeecCCC--C-CCHHHHHHHHHHHHcCCC
Q 031686           83 AFKG--KLLFVYSQIYPKLKGQIF----DYFGVTCYTSRVIAVASIRKR--KKYVLNG--E-LTLSNVKSFALDFLGDKL  151 (155)
Q Consensus        83 ~~~~--~i~F~~vd~~~~~~~~~~----~~~gl~~~~~P~v~i~~~~~~--~kY~~~~--~-~t~~~I~~Fi~~f~~Gkl  151 (155)
                      .+.+  .+.++|+|.+.  ++-+.    +.||++-. -|++.+++.+..  -.+.+++  + -|.+.|..||.++++|++
T Consensus       296 ~nt~np~LsivwIDPD~--fPllv~yWE~tF~Idl~-~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg~i  372 (383)
T PF01216_consen  296 DNTDNPDLSIVWIDPDD--FPLLVPYWEKTFGIDLS-RPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSGKI  372 (383)
T ss_dssp             HCTT-TT--EEEE-GGG---HHHHHHHHHHHTT-TT-S-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCTCC
T ss_pred             hcCcCCceeEEEECCCC--CchhHHHHHhhcCcccc-CCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcCCC
Confidence            8875  59999999996  44333    56788754 599999998643  2445653  2 589999999999999998


Q ss_pred             cc
Q 031686          152 RN  153 (155)
Q Consensus       152 ~p  153 (155)
                      .+
T Consensus       373 ~~  374 (383)
T PF01216_consen  373 NT  374 (383)
T ss_dssp             TB
T ss_pred             CC
Confidence            75

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX)

Probab=98.82  E-value=2.8e-08  Score=66.66  Aligned_cols=101  Identities=28%  Similarity=0.418  Sum_probs=70.3

Q ss_pred             EecCCCchhhhhcCCCceEEEEeecCC---hhH-HHHHHHHHHhh----c--C---ceEEEEEeCCCcchhhhhhhhCCC
Q 031686           44 ITYSRETTPLILNSPLKLLWLFAAVHD---SEA-KSIFQETARAF----K--G---KLLFVYSQIYPKLKGQIFDYFGVT  110 (155)
Q Consensus        44 ~e~~~~~~~~i~~~~~~~v~lf~~~~~---~~~-~~~~~~vA~~~----~--~---~i~F~~vd~~~~~~~~~~~~~gl~  110 (155)
                      .++|+.++.++-+.  |.+++|.+.++   .+. ++.+..+|++.    +  +   .+.|+....++ -...+.++.++.
T Consensus         2 ~~Lse~~a~~Ln~~--p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede-~tdsLRDf~nL~   78 (116)
T cd03071           2 LELSESNAVQLNEG--PCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDD-MTDSLRDYTNLP   78 (116)
T ss_pred             ccccHHHHHhhcCC--ceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccch-HHHHHHHhcCCC
Confidence            35677776665333  57888886642   456 78888888753    2  1   14554433322 244555677887


Q ss_pred             CCCcceEEEEecCCCeeecCC-CCCCHHHHHHHHHHHHc
Q 031686          111 CYTSRVIAVASIRKRKKYVLN-GELTLSNVKSFALDFLG  148 (155)
Q Consensus       111 ~~~~P~v~i~~~~~~~kY~~~-~~~t~~~I~~Fi~~f~~  148 (155)
                       +..|.++|++....++|.++ +++|.+++++|+.+|+.
T Consensus        79 -d~~P~LviLDip~r~~~v~~~eeIT~e~~~~fv~~ylA  116 (116)
T cd03071          79 -EAAPLLTILDMSARAKYVMDVEEITPAIVEAFVSDFLA  116 (116)
T ss_pred             -ccCceEEEEeccccceEeCchHhcCHHHHHHHHHHhhC
Confidence             46899999999777899988 58999999999999974

NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.70  E-value=4.3e-07  Score=59.90  Aligned_cols=98  Identities=17%  Similarity=0.231  Sum_probs=77.0

Q ss_pred             eEecCCCchhhhhcC-CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           43 MITYSRETTPLILNS-PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        43 v~e~~~~~~~~i~~~-~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      |..+|.+++.+.... +.+.++.|....  .-.. ...+.++|+++.+++.|+.+|.+.  ...+++.+++..  .|++.
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~--~Pt~~   76 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE--NKELCKKYGVKS--VPTII   76 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT--SHHHHHHTTCSS--SSEEE
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhc--cchhhhccCCCC--CCEEE
Confidence            457889999998887 556677777653  2345 778999999999899999999996  678899999974  89999


Q ss_pred             EEecCCCeeecCCCCCCHHHHHHHHHH
Q 031686          119 VASIRKRKKYVLNGELTLSNVKSFALD  145 (155)
Q Consensus       119 i~~~~~~~kY~~~~~~t~~~I~~Fi~~  145 (155)
                      +++.. .....+.|..+.++|.+||++
T Consensus        77 ~~~~g-~~~~~~~g~~~~~~l~~~i~~  102 (103)
T PF00085_consen   77 FFKNG-KEVKRYNGPRNAESLIEFIEK  102 (103)
T ss_dssp             EEETT-EEEEEEESSSSHHHHHHHHHH
T ss_pred             EEECC-cEEEEEECCCCHHHHHHHHHc
Confidence            99853 222245677899999999975

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.60  E-value=9.2e-07  Score=58.61  Aligned_cols=97  Identities=16%  Similarity=0.104  Sum_probs=73.9

Q ss_pred             eEecCCCchhhhhcCCCc-eEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           43 MITYSRETTPLILNSPLK-LLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~-~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      |.+++.+++......+.+ .++.|....  .-.. ...|.++|+++++.+.|+.+|.+.  +..+.+.||+..  .|++.
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~i~~--~P~~~   77 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV--HQSLAQQYGVRG--FPTIK   77 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc--hHHHHHHCCCCc--cCEEE
Confidence            567888888887655545 466666543  2345 678999999999899999999986  678889999964  89999


Q ss_pred             EEecCCCeeecCCCCCCHHHHHHHH
Q 031686          119 VASIRKRKKYVLNGELTLSNVKSFA  143 (155)
Q Consensus       119 i~~~~~~~kY~~~~~~t~~~I~~Fi  143 (155)
                      +++......+.+.|+.+.++|.+|+
T Consensus        78 ~~~~~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          78 VFGAGKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             EECCCCcceeecCCCCCHHHHHHHh
Confidence            9885423456677889999999986

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.59  E-value=8.2e-07  Score=59.29  Aligned_cols=99  Identities=20%  Similarity=0.164  Sum_probs=74.6

Q ss_pred             CCeEecCCCchhhhhcC-CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           41 PPMITYSRETTPLILNS-PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~-~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      |.+.+++.+++...... +.+.++.|...-  .-.. ...+.++|+++++.+.|+.+|.+.  +..+.+.+|+..  +|+
T Consensus         1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~--~Pt   76 (104)
T cd03004           1 PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK--YESLCQQANIRA--YPT   76 (104)
T ss_pred             CcceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc--hHHHHHHcCCCc--ccE
Confidence            56788998888887544 445566666553  2345 778999999998889999999996  678888899964  899


Q ss_pred             EEEEecCCCeeecCCCCCC-HHHHHHHH
Q 031686          117 IAVASIRKRKKYVLNGELT-LSNVKSFA  143 (155)
Q Consensus       117 v~i~~~~~~~kY~~~~~~t-~~~I~~Fi  143 (155)
                      +.++.......+.+.|..+ .++|.+|+
T Consensus        77 ~~~~~~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          77 IRLYPGNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             EEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence            9999864234555677776 89999885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.57  E-value=1.8e-06  Score=57.44  Aligned_cols=97  Identities=14%  Similarity=0.124  Sum_probs=75.0

Q ss_pred             CCeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686           41 PPMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI  117 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v  117 (155)
                      |-+.+++.++++.....+.+.++.|....  .-.. ...|.++|+++++.+.|+.+|.+.  ...+.+.+++.  .+|++
T Consensus         1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~--~~~~~~~~~v~--~~Pt~   76 (101)
T cd03003           1 PEIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD--DRMLCRSQGVN--SYPSL   76 (101)
T ss_pred             CCeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc--cHHHHHHcCCC--ccCEE
Confidence            45788999999988877766677776553  2345 778999999999889999999996  57888899986  48999


Q ss_pred             EEEecCCCeeecCCCCCCHHHHHHH
Q 031686          118 AVASIRKRKKYVLNGELTLSNVKSF  142 (155)
Q Consensus       118 ~i~~~~~~~kY~~~~~~t~~~I~~F  142 (155)
                      .++.. +.....+.|..+.++|.+|
T Consensus        77 ~~~~~-g~~~~~~~G~~~~~~l~~f  100 (101)
T cd03003          77 YVFPS-GMNPEKYYGDRSKESLVKF  100 (101)
T ss_pred             EEEcC-CCCcccCCCCCCHHHHHhh
Confidence            98863 2223456678899999887

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.55  E-value=1.1e-06  Score=59.14  Aligned_cols=104  Identities=17%  Similarity=0.213  Sum_probs=77.3

Q ss_pred             CCeEecCCCchhhhhcCCCce--EEEEeecC--ChhH-HHHHHHHHHhhcC--ceEEEEEeCCCcchhhhhh----hhCC
Q 031686           41 PPMITYSRETTPLILNSPLKL--LWLFAAVH--DSEA-KSIFQETARAFKG--KLLFVYSQIYPKLKGQIFD----YFGV  109 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~~~~~--v~lf~~~~--~~~~-~~~~~~vA~~~~~--~i~F~~vd~~~~~~~~~~~----~~gl  109 (155)
                      |....++++++..+.+.+..-  ++.|+..+  +.-+ .+.++++|+++++  ++.|+|+|.+.  ++-+..    .||+
T Consensus         1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~--FPllv~yWektF~I   78 (120)
T cd03074           1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDD--FPLLVPYWEKTFGI   78 (120)
T ss_pred             CchhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCcc--CchhhHHHHhhcCc
Confidence            556678888888888776433  67777665  3445 8899999999875  59999999997  554444    4677


Q ss_pred             CCCCcceEEEEecCCC--eeecCCC--C-CCHHHHHHHHHHHH
Q 031686          110 TCYTSRVIAVASIRKR--KKYVLNG--E-LTLSNVKSFALDFL  147 (155)
Q Consensus       110 ~~~~~P~v~i~~~~~~--~kY~~~~--~-~t~~~I~~Fi~~f~  147 (155)
                      +-. -|+|.+++.+..  --|.+++  + -|.+.|..||++++
T Consensus        79 Dl~-~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL  120 (120)
T cd03074          79 DLF-RPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL  120 (120)
T ss_pred             ccC-CCceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence            753 699999998532  3566754  3 68999999999874

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.1e-06  Score=73.79  Aligned_cols=122  Identities=11%  Similarity=0.035  Sum_probs=89.8

Q ss_pred             EEeccCCcCHHHHHHHHHhCCCCCeEecCC-CchhhhhcCCCce-EEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCC
Q 031686           19 FIFSDVSFTISVIDDFISLNKIPPMITYSR-ETTPLILNSPLKL-LWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIY   96 (155)
Q Consensus        19 ~~~y~g~~~~~~l~~fI~~~~~P~v~e~~~-~~~~~i~~~~~~~-v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~   96 (155)
                      -..|+|+++.+.|.+|+++.+.|.+.++.. +.++.+.+. .+. ++.|....++. .+.+..+|.+.++++.|+.... 
T Consensus       112 ~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~-~~~~vig~F~d~~~~-~~~~~~~a~~l~~d~~F~~ts~-  188 (493)
T KOG0190|consen  112 AQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSK-KDVVVIGFFKDLESL-AESFFDAASKLRDDYKFAHTSD-  188 (493)
T ss_pred             ceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccC-CceEEEEEecccccc-hHHHHHHHHhccccceeeccCc-
Confidence            468999999999999999999999999985 556665555 455 66666543222 3678888999999999994322 


Q ss_pred             CcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHH
Q 031686           97 PKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus        97 ~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                          ..+++.++++.+..|.+++.+......+.++++++.+.|.+||+...
T Consensus       189 ----~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~  235 (493)
T KOG0190|consen  189 ----SDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENS  235 (493)
T ss_pred             ----HhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhc
Confidence                35677788764446667777764333344578899999999998754

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=98.50  E-value=2.1e-06  Score=56.53  Aligned_cols=96  Identities=18%  Similarity=0.190  Sum_probs=72.9

Q ss_pred             cCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC--ceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEE
Q 031686           46 YSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG--KLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVA  120 (155)
Q Consensus        46 ~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~--~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~  120 (155)
                      ++.+++......+.+.++.|....  .... ...+.++|+.+++  .+.|+.+|.+.  ...+.+.||+..  .|++.++
T Consensus         1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~i~~--~P~~~~~   76 (102)
T TIGR01126         1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA--EKDLASRFGVSG--FPTIKFF   76 (102)
T ss_pred             CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc--hHHHHHhCCCCc--CCEEEEe
Confidence            356777887776666677777654  2344 6778889999887  69999999986  577888999864  8999998


Q ss_pred             ecCCCeeecCCCCCCHHHHHHHHHHH
Q 031686          121 SIRKRKKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       121 ~~~~~~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      +... ..+.+.|..+.++|..||++.
T Consensus        77 ~~~~-~~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        77 PKGK-KPVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             cCCC-cceeecCCCCHHHHHHHHHhc
Confidence            8642 255667888999999999864

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=98.39  E-value=7e-06  Score=54.99  Aligned_cols=99  Identities=14%  Similarity=0.157  Sum_probs=73.0

Q ss_pred             eEecCCCchhhhhcCC-CceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           43 MITYSRETTPLILNSP-LKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~-~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      |.+++.+++....... .+.++.|....  .-.. ...+.++|+++++.+.|+.+|.+......+.+.||+..  .|++.
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~--~Pt~~   79 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQG--FPTLK   79 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCc--CCEEE
Confidence            5688999988876554 44566666553  2244 66789999999888889989888643567888899874  89999


Q ss_pred             EEecCC----CeeecCCCCCCHHHHHHHH
Q 031686          119 VASIRK----RKKYVLNGELTLSNVKSFA  143 (155)
Q Consensus       119 i~~~~~----~~kY~~~~~~t~~~I~~Fi  143 (155)
                      +++...    ...+.+.|..+.++|.+||
T Consensus        80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          80 VFRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             EEeCCCcccccccccccCccCHHHHHHHh
Confidence            998642    1234456788999999997

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.35  E-value=8.2e-06  Score=54.92  Aligned_cols=97  Identities=20%  Similarity=0.226  Sum_probs=70.7

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhc------CceEEEEEeCCCcchhhhhhhhCCCCCC
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFK------GKLLFVYSQIYPKLKGQIFDYFGVTCYT  113 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~------~~i~F~~vd~~~~~~~~~~~~~gl~~~~  113 (155)
                      |.+++.+++++..+...+.++.|...-  .-.. ...+.++|++++      +.+.|+.+|.+.  +..+.+.||+.  .
T Consensus         3 v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~v~--~   78 (108)
T cd02996           3 IVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK--ESDIADRYRIN--K   78 (108)
T ss_pred             eEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC--CHHHHHhCCCC--c
Confidence            678899999998877765566666542  2344 667888887753      258999999986  57888999997  4


Q ss_pred             cceEEEEecCCCeeecCCCCCCHHHHHHHH
Q 031686          114 SRVIAVASIRKRKKYVLNGELTLSNVKSFA  143 (155)
Q Consensus       114 ~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi  143 (155)
                      +|++.+..........+.|.-+.+.|.+||
T Consensus        79 ~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          79 YPTLKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             CCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            899998874211124456778889999885

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=98.33  E-value=3e-06  Score=66.95  Aligned_cols=122  Identities=7%  Similarity=0.081  Sum_probs=85.5

Q ss_pred             cCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCceEEEEeecC-------ChhH-HHHHHHHHHhhcC------ceEEE
Q 031686           26 FTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVH-------DSEA-KSIFQETARAFKG------KLLFV   91 (155)
Q Consensus        26 ~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~-------~~~~-~~~~~~vA~~~~~------~i~F~   91 (155)
                      .+.++|..||...++|-+...+.-++..+-.+++-+++.+.+..       +... .+...++|+.+|+      ++.|.
T Consensus       218 ~dd~dLseWinRERf~~fLa~dgflL~EiG~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~  297 (468)
T KOG4277|consen  218 GDDEDLSEWINRERFPGFLAADGFLLAEIGASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFA  297 (468)
T ss_pred             CchhHHHHHHhHhhccchhhcccchHHHhCcCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceee
Confidence            35789999999999999999999898888777754444444432       1244 6677788888775      58999


Q ss_pred             EEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCC---CCCHHHHHHHHHH----HHcCCCc
Q 031686           92 YSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNG---ELTLSNVKSFALD----FLGDKLR  152 (155)
Q Consensus        92 ~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~---~~t~~~I~~Fi~~----f~~Gkl~  152 (155)
                      |.|+...     ...+.+..-..|.++|.+.++.+.|.-+.   -.+.++|.+||++    +.+|.+.
T Consensus       298 hlDGnD~-----~nqilM~als~P~l~i~NtsnqeYfLse~d~qikniedilqFientsegI~d~Tie  360 (468)
T KOG4277|consen  298 HLDGNDL-----ANQILMAALSEPHLFIFNTSNQEYFLSEDDPQIKNIEDILQFIENTSEGIDDETIE  360 (468)
T ss_pred             ccchhHH-----HHHHHHHhhcCCeEEEEecCchheeeccCChhhhhHHHHHHHHhccccccccccee
Confidence            9999852     22222233346999999986554444222   3688999999999    5555544

>PRK10996 thioredoxin 2; Provisional

Probab=98.30  E-value=1.3e-05  Score=56.84  Aligned_cols=98  Identities=20%  Similarity=0.246  Sum_probs=74.6

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEE
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAV  119 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i  119 (155)
                      +.+++.++++.+.+.+++.++.|....  .-.. ...|.++++++.+.+.|+.+|.+.  ...+.+.||+..  +|++++
T Consensus        37 ~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~V~~--~Ptlii  112 (139)
T PRK10996         37 VINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA--ERELSARFRIRS--IPTIMI  112 (139)
T ss_pred             CEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC--CHHHHHhcCCCc--cCEEEE
Confidence            445677788888777766676676553  2344 668999999999889999999986  578889999964  899998


Q ss_pred             EecCCCee-ecCCCCCCHHHHHHHHHHH
Q 031686          120 ASIRKRKK-YVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       120 ~~~~~~~k-Y~~~~~~t~~~I~~Fi~~f  146 (155)
                      ++  .|+. ..+.|..+.+.|.+|++..
T Consensus       113 ~~--~G~~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        113 FK--NGQVVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             EE--CCEEEEEEcCCCCHHHHHHHHHHh
Confidence            86  3443 3456778999999999864

>PRK09381 trxA thioredoxin; Provisional

Probab=98.30  E-value=2.2e-05  Score=52.80  Aligned_cols=101  Identities=18%  Similarity=0.178  Sum_probs=74.6

Q ss_pred             CeEecCCCchhh-hhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686           42 PMITYSRETTPL-ILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI  117 (155)
Q Consensus        42 ~v~e~~~~~~~~-i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v  117 (155)
                      -|.+++.+++.+ +...+.+.++.|....  .-.. ...+.++|+++.+++.|+.+|.+.  ...+.+.|++.  ..|++
T Consensus         4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~--~~~~~~~~~v~--~~Pt~   79 (109)
T PRK09381          4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIR--GIPTL   79 (109)
T ss_pred             cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC--ChhHHHhCCCC--cCCEE
Confidence            366778778775 4555666666666553  2344 678899999999889999999986  56778888986  48999


Q ss_pred             EEEecCCCeeecCCCCCCHHHHHHHHHHHH
Q 031686          118 AVASIRKRKKYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       118 ~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      ++++. +...+.+.|..+.+.|.+|+...+
T Consensus        80 ~~~~~-G~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         80 LLFKN-GEVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EEEeC-CeEEEEecCCCCHHHHHHHHHHhc
Confidence            99863 223555677788999999998754

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=98.25  E-value=2.2e-05  Score=51.82  Aligned_cols=98  Identities=10%  Similarity=0.163  Sum_probs=71.6

Q ss_pred             eEecCCCchhhhhcCCC-ceEEEEeecC--ChhH-HHHHHHHHHhhc--CceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           43 MITYSRETTPLILNSPL-KLLWLFAAVH--DSEA-KSIFQETARAFK--GKLLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~-~~v~lf~~~~--~~~~-~~~~~~vA~~~~--~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      +.+++.+++........ +.++.|....  .-.. ...+.++|++++  +.+.|+.+|.+.+ +..+.+.|++.  ..|+
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~i~--~~P~   78 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA-NKDLAKKYGVS--GFPT   78 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc-chhhHHhCCCC--CcCE
Confidence            46788888888776554 5566666543  2344 678899999887  5688999988752 46788889986  4899


Q ss_pred             EEEEecCCCeeecCCCCCCHHHHHHHH
Q 031686          117 IAVASIRKRKKYVLNGELTLSNVKSFA  143 (155)
Q Consensus       117 v~i~~~~~~~kY~~~~~~t~~~I~~Fi  143 (155)
                      +.+++......+.+.|..+.++|.+||
T Consensus        79 ~~~~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          79 LKFFPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EEEEeCCCCCccccCCccCHHHHHhhC
Confidence            999985433455667788999999885

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.25  E-value=2.8e-05  Score=53.94  Aligned_cols=100  Identities=16%  Similarity=0.190  Sum_probs=72.1

Q ss_pred             CeEecCCCchhhhhcCCCce-EEEEeecCC----hh--H-HHHHHHHHHhh--cCceEEEEEeCCCcchhhhhhhhCCCC
Q 031686           42 PMITYSRETTPLILNSPLKL-LWLFAAVHD----SE--A-KSIFQETARAF--KGKLLFVYSQIYPKLKGQIFDYFGVTC  111 (155)
Q Consensus        42 ~v~e~~~~~~~~i~~~~~~~-v~lf~~~~~----~~--~-~~~~~~vA~~~--~~~i~F~~vd~~~~~~~~~~~~~gl~~  111 (155)
                      .|.++|.+|+.+.......+ ++.|...--    -.  . .-.+.++|.++  .+++.|+.+|.+.  +.++++.||+.+
T Consensus        10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--~~~La~~~~I~~   87 (120)
T cd03065          10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK--DAKVAKKLGLDE   87 (120)
T ss_pred             ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC--CHHHHHHcCCcc
Confidence            46777888888655554433 444443311    11  2 34567888888  7789999999997  689999999974


Q ss_pred             CCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHH
Q 031686          112 YTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       112 ~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                        +|++.++..  |+.-.+.|..+.+.|.+||++..
T Consensus        88 --iPTl~lfk~--G~~v~~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          88 --EDSIYVFKD--DEVIEYDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             --ccEEEEEEC--CEEEEeeCCCCHHHHHHHHHHHh
Confidence              899999983  44334567789999999999865

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.24  E-value=1.4e-05  Score=51.83  Aligned_cols=95  Identities=15%  Similarity=0.229  Sum_probs=70.6

Q ss_pred             ecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhh--cCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEE
Q 031686           45 TYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAF--KGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAV  119 (155)
Q Consensus        45 e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~--~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i  119 (155)
                      +++.+++......+.+.++.|....  .... ...+.++|+.+  .+.+.|+.+|.+.  ...+.+.||+.  ..|++.+
T Consensus         2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~--~~Pt~~~   77 (101)
T cd02961           2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVR--GYPTIKL   77 (101)
T ss_pred             cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc--hHHHHHhCCCC--CCCEEEE
Confidence            4566777887777776677777664  2345 77888999998  5789999999885  56888999996  4899999


Q ss_pred             EecCCCeeecCCCCCCHHHHHHHH
Q 031686          120 ASIRKRKKYVLNGELTLSNVKSFA  143 (155)
Q Consensus       120 ~~~~~~~kY~~~~~~t~~~I~~Fi  143 (155)
                      ++........+.|..+.+.|.+|+
T Consensus        78 ~~~~~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          78 FPNGSKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             EcCCCcccccCCCCcCHHHHHhhC
Confidence            986422334456667888888774

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=98.19  E-value=2.7e-05  Score=53.41  Aligned_cols=99  Identities=15%  Similarity=0.168  Sum_probs=72.2

Q ss_pred             CCCeEecCCCchhhh---hcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhh-hhhCCCCC
Q 031686           40 IPPMITYSRETTPLI---LNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIF-DYFGVTCY  112 (155)
Q Consensus        40 ~P~v~e~~~~~~~~i---~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~-~~~gl~~~  112 (155)
                      -+-|.+++.+|+.++   .+...+.++.|...-  .... ...+.++|+++++.+.|+.+|.+.  ...++ +.+++.. 
T Consensus         8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~--~~~l~~~~~~I~~-   84 (113)
T cd03006           8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW--PQGKCRKQKHFFY-   84 (113)
T ss_pred             CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC--ChHHHHHhcCCcc-
Confidence            356889999998875   355555566676542  2455 778999999999889999999986  45666 5788864 


Q ss_pred             CcceEEEEecCCCeeecCCCCCCHHHHHHHH
Q 031686          113 TSRVIAVASIRKRKKYVLNGELTLSNVKSFA  143 (155)
Q Consensus       113 ~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi  143 (155)
                       +|++.+.... ...-.+.|..+.+.|..|+
T Consensus        85 -~PTl~lf~~g-~~~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          85 -FPVIHLYYRS-RGPIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             -cCEEEEEECC-ccceEEeCCCCHHHHHhhC
Confidence             8999988642 2233346778899888763

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=98.18  E-value=2.9e-05  Score=52.45  Aligned_cols=98  Identities=13%  Similarity=0.132  Sum_probs=69.4

Q ss_pred             eEecCCCchhhhhc---CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcchhhhh-hhhCCCCCCc
Q 031686           43 MITYSRETTPLILN---SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYPKLKGQIF-DYFGVTCYTS  114 (155)
Q Consensus        43 v~e~~~~~~~~i~~---~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~~~~~~-~~~gl~~~~~  114 (155)
                      |.+++.++++.+..   .+++.++.|....  .-.. ...+.++|+++++. +.|+.+|.+.. ...+. +.+|+.  ..
T Consensus         3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~-~~~~~~~~~~v~--~~   79 (109)
T cd02993           3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE-QREFAKEELQLK--SF   79 (109)
T ss_pred             ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc-chhhHHhhcCCC--cC
Confidence            67889888888763   4566677776553  2344 66789999999874 88999998852 23444 457885  48


Q ss_pred             ceEEEEecCCCeeecCCCC-CCHHHHHHHH
Q 031686          115 RVIAVASIRKRKKYVLNGE-LTLSNVKSFA  143 (155)
Q Consensus       115 P~v~i~~~~~~~kY~~~~~-~t~~~I~~Fi  143 (155)
                      |++.+++......+.++|+ .+.++|..||
T Consensus        80 Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          80 PTILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence            9999887643345566764 7999998885

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=98.16  E-value=7.8e-05  Score=53.01  Aligned_cols=103  Identities=9%  Similarity=-0.051  Sum_probs=74.3

Q ss_pred             CchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCC
Q 031686           49 ETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKR  125 (155)
Q Consensus        49 ~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~  125 (155)
                      ..+......++++++.|...-  .-.. ...+.++++++.+++.|+.++.+...+..+++.||+..  +|++++++....
T Consensus        11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~--iPt~v~~~~~G~   88 (142)
T cd02950          11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDG--IPHFVFLDREGN   88 (142)
T ss_pred             CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCC--CCEEEEECCCCC
Confidence            445566667777776776542  2244 67888899999888888888877533456788899874  899999975433


Q ss_pred             eeecCCCCCCHHHHHHHHHHHHcCCCcc
Q 031686          126 KKYVLNGELTLSNVKSFALDFLGDKLRN  153 (155)
Q Consensus       126 ~kY~~~~~~t~~~I~~Fi~~f~~Gkl~p  153 (155)
                      ....+.|..+.+.|.+.++.+++|.=.|
T Consensus        89 ~v~~~~G~~~~~~l~~~l~~l~~~~~~~  116 (142)
T cd02950          89 EEGQSIGLQPKQVLAQNLDALVAGEPLP  116 (142)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHHcCCCCC
Confidence            3444567778999999999999887433

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=98.15  E-value=0.00014  Score=50.32  Aligned_cols=103  Identities=16%  Similarity=0.161  Sum_probs=69.1

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecCChhH-HHHHHHHHHh-h--cCceEEEEEeCCCc---chhhhhhhhCCCCCCcc
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVHDSEA-KSIFQETARA-F--KGKLLFVYSQIYPK---LKGQIFDYFGVTCYTSR  115 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~~~~~-~~~~~~vA~~-~--~~~i~F~~vd~~~~---~~~~~~~~~gl~~~~~P  115 (155)
                      +.+++.-|+.++.....-.++=|--.-.+.+ .++|..+|++ .  .++++++-|.....   ++.++.+.||++.++.|
T Consensus         6 ~v~LD~~tFdKvi~kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fP   85 (126)
T PF07912_consen    6 CVPLDELTFDKVIPKFKYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFP   85 (126)
T ss_dssp             SEEESTTHHHHHGGGSSEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-S
T ss_pred             eeeccceehhheeccCceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCC
Confidence            5678888999988776333444433223444 7899999944 3  35699998877642   47788999999998999


Q ss_pred             eEEEEecCCCe--eecCCCCCCHHHHHHHHHH
Q 031686          116 VIAVASIRKRK--KYVLNGELTLSNVKSFALD  145 (155)
Q Consensus       116 ~v~i~~~~~~~--kY~~~~~~t~~~I~~Fi~~  145 (155)
                      .+.+.......  .|+.++++|.++|++|+.+
T Consensus        86 v~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~  117 (126)
T PF07912_consen   86 VIYLFVGDKEEPVRYPFDGDVTADNLQRFVKS  117 (126)
T ss_dssp             EEEEEESSTTSEEEE-TCS-S-HHHHHHHHHH
T ss_pred             EEEEecCCCCCCccCCccCCccHHHHHHHHHh
Confidence            99988843222  4544678999999999975

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=98.13  E-value=3.2e-05  Score=50.96  Aligned_cols=95  Identities=12%  Similarity=0.149  Sum_probs=69.7

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC---ceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG---KLLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~---~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      +.+++.++++.....+ +.++.|...-  .-.. ...+.++|+++++   ++.|+.+|.+.  ...+.+.|++.  .+|+
T Consensus         2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~--~~Pt   76 (102)
T cd03005           2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ--HRELCSEFQVR--GYPT   76 (102)
T ss_pred             eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC--ChhhHhhcCCC--cCCE
Confidence            5678888888887665 4666665442  2244 6679999999987   69999999885  45778888886  4899


Q ss_pred             EEEEecCCCeeecCCCCCCHHHHHHHH
Q 031686          117 IAVASIRKRKKYVLNGELTLSNVKSFA  143 (155)
Q Consensus       117 v~i~~~~~~~kY~~~~~~t~~~I~~Fi  143 (155)
                      +.++... .....+.|..+.+.|.+||
T Consensus        77 ~~~~~~g-~~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          77 LLLFKDG-EKVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             EEEEeCC-CeeeEeeCCCCHHHHHhhC
Confidence            9988642 2344566788899998885

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=98.10  E-value=6.8e-05  Score=49.43  Aligned_cols=96  Identities=17%  Similarity=0.172  Sum_probs=69.6

Q ss_pred             eEecCCCchhhhhcCC-CceEEEEeecC--ChhH-HHHHHHHHHhhcC--ceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           43 MITYSRETTPLILNSP-LKLLWLFAAVH--DSEA-KSIFQETARAFKG--KLLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~-~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~--~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      |.+++.+++....... .+.++.|....  .... ...+.++|+.+++  .+.|+.+|.+.  + .....+++  ...|+
T Consensus         2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~-~~~~~~~~--~~~Pt   76 (104)
T cd02995           2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA--N-DVPSEFVV--DGFPT   76 (104)
T ss_pred             eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc--h-hhhhhccC--CCCCE
Confidence            6788999998876554 55566666553  2355 7889999998876  58999999885  2 46667777  35899


Q ss_pred             EEEEecCC-CeeecCCCCCCHHHHHHHH
Q 031686          117 IAVASIRK-RKKYVLNGELTLSNVKSFA  143 (155)
Q Consensus       117 v~i~~~~~-~~kY~~~~~~t~~~I~~Fi  143 (155)
                      +.++.... ...+.+.|+.+.++|.+||
T Consensus        77 ~~~~~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          77 ILFFPAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             EEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence            99987532 2344567888999999886

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>TIGR01068 thioredoxin thioredoxin

Probab=98.10  E-value=6.8e-05  Score=48.96  Aligned_cols=95  Identities=17%  Similarity=0.176  Sum_probs=66.0

Q ss_pred             CCCchhhhhcCC-CceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686           47 SRETTPLILNSP-LKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI  122 (155)
Q Consensus        47 ~~~~~~~i~~~~-~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~  122 (155)
                      +.+++....... .+.++.|....  .... ...+.++++++.+++.|+.+|.+.  ...+.+.||+..  .|+++++..
T Consensus         2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~--~P~~~~~~~   77 (101)
T TIGR01068         2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE--NPDIAAKYGIRS--IPTLLLFKN   77 (101)
T ss_pred             CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCc--CCEEEEEeC
Confidence            334455544443 35566666553  2344 677889999998889999999986  567788999974  899998863


Q ss_pred             CCCeeecCCCCCCHHHHHHHHHHH
Q 031686          123 RKRKKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       123 ~~~~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                       +.....+.|..+.+.|.+|+++-
T Consensus        78 -g~~~~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        78 -GKEVDRSVGALPKAALKQLINKN  100 (101)
T ss_pred             -CcEeeeecCCCCHHHHHHHHHhh
Confidence             22233445667889999999863

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PTZ00102 disulphide isomerase; Provisional

Probab=98.09  E-value=0.00015  Score=60.70  Aligned_cols=120  Identities=14%  Similarity=0.163  Sum_probs=86.8

Q ss_pred             cCHHHHHHHHHhCC-----------------CCCeEecCCCchhhh-hcCCCceEEEEeecC--ChhH-HHHHHHHHHhh
Q 031686           26 FTISVIDDFISLNK-----------------IPPMITYSRETTPLI-LNSPLKLLWLFAAVH--DSEA-KSIFQETARAF   84 (155)
Q Consensus        26 ~~~~~l~~fI~~~~-----------------~P~v~e~~~~~~~~i-~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~   84 (155)
                      ++.+.|.+|++.-.                 -..+..++.+++.+. ...++++++.|...-  .-.. ...+.++|+.+
T Consensus       325 ~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~  404 (477)
T PTZ00102        325 DSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKY  404 (477)
T ss_pred             CCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence            57899999999521                 123667788888876 566666776776542  2244 66788999888


Q ss_pred             cC--ceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcC
Q 031686           85 KG--KLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus        85 ~~--~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                      ++  .+.|+++|.+.  +....+.+++..  .|++.+++........+.|..+.++|.+||++....
T Consensus       405 ~~~~~v~~~~id~~~--~~~~~~~~~v~~--~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~  467 (477)
T PTZ00102        405 KDNDSIIVAKMNGTA--NETPLEEFSWSA--FPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATN  467 (477)
T ss_pred             ccCCcEEEEEEECCC--CccchhcCCCcc--cCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence            75  58899999885  456677788764  899999985322223457889999999999997653

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=98.07  E-value=8.1e-05  Score=49.13  Aligned_cols=98  Identities=16%  Similarity=0.166  Sum_probs=71.4

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhc--CceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFK--GKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI  117 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~--~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v  117 (155)
                      |.+++.+++......+.+.++.|...-  .-.. ...+.++++.+.  +.+.|+.+|.+...+..+.+.+|+.  ..|++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~--~~Pt~   79 (104)
T cd02997           2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVK--GFPTF   79 (104)
T ss_pred             eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCc--cccEE
Confidence            567788888888888776677777653  2344 667788888876  5688888888753366788889986  48999


Q ss_pred             EEEecCCCeeecCCCCCCHHHHHHHH
Q 031686          118 AVASIRKRKKYVLNGELTLSNVKSFA  143 (155)
Q Consensus       118 ~i~~~~~~~kY~~~~~~t~~~I~~Fi  143 (155)
                      ++.... ...+.+.|..+.+.+.+|+
T Consensus        80 ~~~~~g-~~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          80 KYFENG-KFVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EEEeCC-CeeEEeCCCCCHHHHHhhC
Confidence            888742 2345567788899988875

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=98.01  E-value=0.00022  Score=49.20  Aligned_cols=102  Identities=16%  Similarity=0.101  Sum_probs=71.5

Q ss_pred             eEecCCCchhhhhcCCCceEEEEee--cCChhHHHHHHHHHHhhc---CceEEEEEeCCC---cchhhhhhhhCCCCCCc
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAA--VHDSEAKSIFQETARAFK---GKLLFVYSQIYP---KLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~--~~~~~~~~~~~~vA~~~~---~~i~F~~vd~~~---~~~~~~~~~~gl~~~~~  114 (155)
                      +..++.+|+.+........++-|.-  +-- .+...++++|.++.   +.++++-||.++   ..+..+.+.||++...+
T Consensus         3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc-~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy   81 (116)
T cd03007           3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYG-EKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESY   81 (116)
T ss_pred             eeECChhhHHHHHhcCCcEEEEEeCCCCCC-CChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence            5679999999988777555666655  211 11346677776663   359999999953   12567889999986569


Q ss_pred             ceEEEEecCC-CeeecCCCC-CCHHHHHHHHHH
Q 031686          115 RVIAVASIRK-RKKYVLNGE-LTLSNVKSFALD  145 (155)
Q Consensus       115 P~v~i~~~~~-~~kY~~~~~-~t~~~I~~Fi~~  145 (155)
                      |++.+..... .+.-.++|. .+.++|.+||+.
T Consensus        82 PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~  114 (116)
T cd03007          82 PVIYLFHGGDFENPVPYSGADVTVDALQRFLKG  114 (116)
T ss_pred             CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHh
Confidence            9999888531 122245674 999999999975

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=97.95  E-value=7.8e-05  Score=50.19  Aligned_cols=88  Identities=17%  Similarity=0.210  Sum_probs=59.1

Q ss_pred             CchhhhhcCCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecC-----
Q 031686           49 ETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIR-----  123 (155)
Q Consensus        49 ~~~~~i~~~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~-----  123 (155)
                      +.++.+.......++.|+...+.+..+.|.++|..+|+++.|.....+     .+.+.+|+    .|.++++.+.     
T Consensus         9 ~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~-----~~~~~~~~----~~~ivl~~p~~~~~k   79 (104)
T cd03069           9 AEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTSDK-----QLLEKYGY----GEGVVLFRPPRLSNK   79 (104)
T ss_pred             HHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEChH-----HHHHhcCC----CCceEEEechhhhcc
Confidence            445665555545577777654322378999999999999999887554     34566666    3667777431     


Q ss_pred             -CCeeecCCCCCCHHHHHHHHHH
Q 031686          124 -KRKKYVLNGELTLSNVKSFALD  145 (155)
Q Consensus       124 -~~~kY~~~~~~t~~~I~~Fi~~  145 (155)
                       ......++|+++.+.|.+||+.
T Consensus        80 ~de~~~~y~g~~~~~~l~~fi~~  102 (104)
T cd03069          80 FEDSSVKFDGDLDSSKIKKFIRE  102 (104)
T ss_pred             cCcccccccCcCCHHHHHHHHHh
Confidence             1112235677899999999975

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=97.94  E-value=0.00026  Score=46.78  Aligned_cols=94  Identities=15%  Similarity=0.086  Sum_probs=68.8

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG-KLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      |.+++.++++++....  .++.|...-  .-.. ...+.++|+.+++ .+.|+.+|.+.  ...+++.+++.  .+|++.
T Consensus         3 v~~l~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~--~~~~~~~~~i~--~~Pt~~   76 (101)
T cd02994           3 VVELTDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ--EPGLSGRFFVT--ALPTIY   76 (101)
T ss_pred             eEEcChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC--CHhHHHHcCCc--ccCEEE
Confidence            6789999999887543  455555442  2234 6678888888765 58999999886  56778888986  489998


Q ss_pred             EEecCCCeeecCCCCCCHHHHHHHHH
Q 031686          119 VASIRKRKKYVLNGELTLSNVKSFAL  144 (155)
Q Consensus       119 i~~~~~~~kY~~~~~~t~~~I~~Fi~  144 (155)
                      ++.  .|+...+.|..+.++|.+|++
T Consensus        77 ~~~--~g~~~~~~G~~~~~~l~~~i~  100 (101)
T cd02994          77 HAK--DGVFRRYQGPRDKEDLISFIE  100 (101)
T ss_pred             EeC--CCCEEEecCCCCHHHHHHHHh
Confidence            874  344445678889999999986

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=97.93  E-value=0.00021  Score=48.91  Aligned_cols=91  Identities=16%  Similarity=0.092  Sum_probs=68.4

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecC----ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVH----DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI  117 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~----~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v  117 (155)
                      ..++|.+|++...+.+.+.++.|...-    +... .-.|.++|++|.+.+.|+.+|.+.  +..++..||+..  +|++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~--~~~la~~f~V~s--IPTl   87 (111)
T cd02965          12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD--EQALAARFGVLR--TPAL   87 (111)
T ss_pred             CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC--CHHHHHHcCCCc--CCEE
Confidence            457788888888888777777776542    3455 678999999999999999999997  568899999974  8999


Q ss_pred             EEEecCCCe-eecCCCCCCHHHH
Q 031686          118 AVASIRKRK-KYVLNGELTLSNV  139 (155)
Q Consensus       118 ~i~~~~~~~-kY~~~~~~t~~~I  139 (155)
                      +++..  |+ ...+.|..+.+.+
T Consensus        88 i~fkd--Gk~v~~~~G~~~~~e~  108 (111)
T cd02965          88 LFFRD--GRYVGVLAGIRDWDEY  108 (111)
T ss_pred             EEEEC--CEEEEEEeCccCHHHH
Confidence            99884  33 2234455555544

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=97.90  E-value=0.00068  Score=47.76  Aligned_cols=111  Identities=15%  Similarity=0.121  Sum_probs=78.7

Q ss_pred             HHHHHHHhCCCCCeEecCCCchhhhhcCCCceEEEEeecC----ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCcchhhh
Q 031686           30 VIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVH----DSEA-KSIFQETARAFKG-KLLFVYSQIYPKLKGQI  103 (155)
Q Consensus        30 ~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~----~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~~~~~  103 (155)
                      .|.+=+..+..|.|.+   .++......+...+++|....    +... --.+.++|++|.+ ++.|+.+|.+.  +..+
T Consensus         9 ~l~~rl~~~g~~~~~~---~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~--~~~L   83 (132)
T PRK11509          9 ALWQRMLARGWTPVSE---SRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--SEAI   83 (132)
T ss_pred             HHHHHHHHcCCCcccc---ccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC--CHHH
Confidence            4444455567777765   666766655533354444332    2334 5678899999984 59999999997  6889


Q ss_pred             hhhhCCCCCCcceEEEEecCCCeee--cCCCCCCHHHHHHHHHHHHcCC
Q 031686          104 FDYFGVTCYTSRVIAVASIRKRKKY--VLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       104 ~~~~gl~~~~~P~v~i~~~~~~~kY--~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      ...||+..  +|+++++..  | ++  .+.|-.+.+.+.++|+.+++--
T Consensus        84 A~~fgV~s--iPTLl~Fkd--G-k~v~~i~G~~~k~~l~~~I~~~L~~~  127 (132)
T PRK11509         84 GDRFGVFR--FPATLVFTG--G-NYRGVLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_pred             HHHcCCcc--CCEEEEEEC--C-EEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence            99999974  899999984  4 33  3456678999999999998754

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=97.89  E-value=0.00032  Score=45.85  Aligned_cols=81  Identities=14%  Similarity=0.192  Sum_probs=60.0

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCee-ecCCCC
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKK-YVLNGE  133 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~k-Y~~~~~  133 (155)
                      +.+.++.|....  .-.. ...+.++++.+.+.+.|+.+|.+.  ...+.+.||+..  +|++++++.  |+. ..+.|.
T Consensus        12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~i~~--~Pt~~~~~~--g~~~~~~~g~   85 (96)
T cd02956          12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA--QPQIAQQFGVQA--LPTVYLFAA--GQPVDGFQGA   85 (96)
T ss_pred             CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC--CHHHHHHcCCCC--CCEEEEEeC--CEEeeeecCC
Confidence            345566666553  2244 677889999998889999999986  678889999874  899999973  432 235677


Q ss_pred             CCHHHHHHHHH
Q 031686          134 LTLSNVKSFAL  144 (155)
Q Consensus       134 ~t~~~I~~Fi~  144 (155)
                      .+.+.|.+|++
T Consensus        86 ~~~~~l~~~l~   96 (96)
T cd02956          86 QPEEQLRQMLD   96 (96)
T ss_pred             CCHHHHHHHhC
Confidence            88999998873

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=0.00026  Score=50.68  Aligned_cols=91  Identities=16%  Similarity=0.242  Sum_probs=70.3

Q ss_pred             hhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeee
Q 031686           52 PLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKY  128 (155)
Q Consensus        52 ~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY  128 (155)
                      .++.+++.|+++-|...-  .=.. .-.+.+++.++.+++.|+.+|.|+  ..++.+.|+++  .+|++++++.  |++-
T Consensus        55 ~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~--~~ela~~Y~I~--avPtvlvfkn--Ge~~  128 (150)
T KOG0910|consen   55 DKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE--HPELAEDYEIS--AVPTVLVFKN--GEKV  128 (150)
T ss_pred             HHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc--ccchHhhccee--eeeEEEEEEC--CEEe
Confidence            356778888877776541  2233 568889999999999999999997  67899999997  4899999985  4433


Q ss_pred             -cCCCCCCHHHHHHHHHHHHc
Q 031686          129 -VLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       129 -~~~~~~t~~~I~~Fi~~f~~  148 (155)
                       .+-|-.+.+.|.++|++|+.
T Consensus       129 d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  129 DRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             eeecccCCHHHHHHHHHHHhc
Confidence             33456789999999999874

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.87  E-value=0.00019  Score=48.00  Aligned_cols=95  Identities=14%  Similarity=0.097  Sum_probs=62.1

Q ss_pred             Eec-CCCchhhhhc-CCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEe
Q 031686           44 ITY-SRETTPLILN-SPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVAS  121 (155)
Q Consensus        44 ~e~-~~~~~~~i~~-~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~  121 (155)
                      .++ +.+.++.+.+ .....++.|+...+.+..+.|.++|..+|+++.|....+.     .+...++++   .|.+++..
T Consensus         3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~-----~~~~~~~~~---~~~i~l~~   74 (102)
T cd03066           3 EIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDS-----KVAKKLGLK---MNEVDFYE   74 (102)
T ss_pred             eEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcH-----HHHHHcCCC---CCcEEEeC
Confidence            445 3345666665 4434466676554433378899999999999999876554     345555664   58888886


Q ss_pred             cCCCeeecC-CCCCCHHHHHHHHHHH
Q 031686          122 IRKRKKYVL-NGELTLSNVKSFALDF  146 (155)
Q Consensus       122 ~~~~~kY~~-~~~~t~~~I~~Fi~~f  146 (155)
                      ......-.+ +|.++.+.|.+||+.-
T Consensus        75 ~~~e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          75 PFMEEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             CCCCCCcccCCCCCCHHHHHHHHHHh
Confidence            422222234 5678999999999753

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.86  E-value=0.00015  Score=47.51  Aligned_cols=87  Identities=15%  Similarity=0.146  Sum_probs=58.3

Q ss_pred             hhhhhcCCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecC
Q 031686           51 TPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVL  130 (155)
Q Consensus        51 ~~~i~~~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~  130 (155)
                      ++.+.....+.++.|+...+.+..+.|.++|..+|+.+.|+.+...     .+.+.++++   .|.++++.......-.+
T Consensus        10 l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~~-----~~~~~~~~~---~~~i~l~~~~~~~~~~y   81 (97)
T cd02981          10 LEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDK-----EVAKKLKVK---PGSVVLFKPFEEEPVEY   81 (97)
T ss_pred             HHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEChH-----HHHHHcCCC---CCceEEeCCcccCCccC
Confidence            4545555555577777654322378999999999999999887643     445555554   47788776532222234


Q ss_pred             CCCCCHHHHHHHHHH
Q 031686          131 NGELTLSNVKSFALD  145 (155)
Q Consensus       131 ~~~~t~~~I~~Fi~~  145 (155)
                      +|.++.++|.+||..
T Consensus        82 ~g~~~~~~l~~fi~~   96 (97)
T cd02981          82 DGEFTEESLVEFIKD   96 (97)
T ss_pred             CCCCCHHHHHHHHHh
Confidence            667889999999974

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=97.85  E-value=0.00029  Score=53.98  Aligned_cols=102  Identities=13%  Similarity=0.153  Sum_probs=76.7

Q ss_pred             CCeEecCCCchhhhhcC-----CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCC
Q 031686           41 PPMITYSRETTPLILNS-----PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCY  112 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~-----~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~  112 (155)
                      ..+.++|.+|+++....     ..+.++.|...-  .-.. ...+.++|+++++.+.|+.+|.+.  +..+.+.||+.. 
T Consensus        30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~--~~~l~~~~~I~~-  106 (224)
T PTZ00443         30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR--ALNLAKRFAIKG-  106 (224)
T ss_pred             CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc--cHHHHHHcCCCc-
Confidence            45889999999986543     245666676553  2244 667899999999989999999886  578889999974 


Q ss_pred             CcceEEEEecCCCeeecC-CCCCCHHHHHHHHHHHHc
Q 031686          113 TSRVIAVASIRKRKKYVL-NGELTLSNVKSFALDFLG  148 (155)
Q Consensus       113 ~~P~v~i~~~~~~~kY~~-~~~~t~~~I~~Fi~~f~~  148 (155)
                       +|++.+++.  |+.+.+ .|+.+.++|.+|+..-..
T Consensus       107 -~PTl~~f~~--G~~v~~~~G~~s~e~L~~fi~~~~~  140 (224)
T PTZ00443        107 -YPTLLLFDK--GKMYQYEGGDRSTEKLAAFALGDFK  140 (224)
T ss_pred             -CCEEEEEEC--CEEEEeeCCCCCHHHHHHHHHHHHH
Confidence             899999983  444433 467899999999987653

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=97.71  E-value=0.0011  Score=45.24  Aligned_cols=97  Identities=8%  Similarity=0.052  Sum_probs=67.3

Q ss_pred             CeEecCC-CchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686           42 PMITYSR-ETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI  117 (155)
Q Consensus        42 ~v~e~~~-~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v  117 (155)
                      .+.+++. +.+.+....+.+.++.|..+.  .-.. ...+.++|+++.+ +.|+.+|.+.  +..+++.|++..  +|++
T Consensus         5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~--~~~l~~~~~v~~--vPt~   79 (113)
T cd02989           5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEK--APFLVEKLNIKV--LPTV   79 (113)
T ss_pred             CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEccc--CHHHHHHCCCcc--CCEE
Confidence            3555655 566666666666666666553  3345 6788899998864 8999999997  677899999974  8999


Q ss_pred             EEEecCCC-eee----cCC--CCCCHHHHHHHH
Q 031686          118 AVASIRKR-KKY----VLN--GELTLSNVKSFA  143 (155)
Q Consensus       118 ~i~~~~~~-~kY----~~~--~~~t~~~I~~Fi  143 (155)
                      +++..... .++    .+.  ++++.++|++|+
T Consensus        80 l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~  112 (113)
T cd02989          80 ILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL  112 (113)
T ss_pred             EEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence            98874211 011    111  368999999886

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=97.69  E-value=0.00076  Score=56.78  Aligned_cols=104  Identities=13%  Similarity=0.053  Sum_probs=73.4

Q ss_pred             CCeEecCCCchhhhhc---CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcchhhhhhhhCCCCCC
Q 031686           41 PPMITYSRETTPLILN---SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYPKLKGQIFDYFGVTCYT  113 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~---~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~~~~~~~~~gl~~~~  113 (155)
                      +.|.++|.+|++....   .+.+.++.|...-  .-.. ...|.++|++++++ +.|+.+|.+........+.|++.  .
T Consensus       351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~--~  428 (463)
T TIGR00424       351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG--S  428 (463)
T ss_pred             CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCC--c
Confidence            4799999999999875   4455566666542  2344 66899999999875 88998988852122223678886  4


Q ss_pred             cceEEEEecCCCeeecCC-CCCCHHHHHHHHHHH
Q 031686          114 SRVIAVASIRKRKKYVLN-GELTLSNVKSFALDF  146 (155)
Q Consensus       114 ~P~v~i~~~~~~~kY~~~-~~~t~~~I~~Fi~~f  146 (155)
                      +|++.++.......-.++ +.-+.++|..||+.+
T Consensus       429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~  462 (463)
T TIGR00424       429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL  462 (463)
T ss_pred             cceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence            899999986432222345 468999999999864

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=97.67  E-value=0.00083  Score=44.21  Aligned_cols=86  Identities=17%  Similarity=0.232  Sum_probs=59.8

Q ss_pred             hhcCC-CceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeec
Q 031686           54 ILNSP-LKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYV  129 (155)
Q Consensus        54 i~~~~-~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~  129 (155)
                      .+..+ .++++.|....  .-.. ...+.++++++.+++.|..+|.+.  ...+.+.+|+.  ..|++.+++. +.....
T Consensus         8 ~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~--~~~l~~~~~v~--~vPt~~i~~~-g~~v~~   82 (97)
T cd02949           8 LYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE--DQEIAEAAGIM--GTPTVQFFKD-KELVKE   82 (97)
T ss_pred             HHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC--CHHHHHHCCCe--eccEEEEEEC-CeEEEE
Confidence            33444 34455555443  2244 677889999998889999999986  56788899986  4899999973 223444


Q ss_pred             CCCCCCHHHHHHHHH
Q 031686          130 LNGELTLSNVKSFAL  144 (155)
Q Consensus       130 ~~~~~t~~~I~~Fi~  144 (155)
                      +.+..+.+++.+|++
T Consensus        83 ~~g~~~~~~~~~~l~   97 (97)
T cd02949          83 ISGVKMKSEYREFIE   97 (97)
T ss_pred             EeCCccHHHHHHhhC
Confidence            566677888888763

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.67  E-value=0.00035  Score=46.72  Aligned_cols=104  Identities=15%  Similarity=0.179  Sum_probs=72.6

Q ss_pred             CeEecC-CCchhhhhcCCCceEEEEeecC-ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcce-E
Q 031686           42 PMITYS-RETTPLILNSPLKLLWLFAAVH-DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRV-I  117 (155)
Q Consensus        42 ~v~e~~-~~~~~~i~~~~~~~v~lf~~~~-~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~-v  117 (155)
                      ++..++ ...+.+++.....++++|.... +-+. .+.|+++|+..+|.-+.+|+|-.+.+...+.+.+-+++..-|. +
T Consensus         2 ~ie~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~   81 (112)
T cd03067           2 LIEDISDHKDFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPV   81 (112)
T ss_pred             ccccccchHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcc
Confidence            333443 3557788888877888887664 4455 8899999999999999999998765578888998887544442 2


Q ss_pred             EEEecCCCeee-cCCCCCCHHHHHHHHHH
Q 031686          118 AVASIRKRKKY-VLNGELTLSNVKSFALD  145 (155)
Q Consensus       118 ~i~~~~~~~kY-~~~~~~t~~~I~~Fi~~  145 (155)
                      .+.+..+|... .++-.+|..++..|++|
T Consensus        82 ~LkHYKdG~fHkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          82 ELKHYKDGDFHTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             hhhcccCCCccccccchhhHHHHHHHhhC
Confidence            34444444222 23446899999999875

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=97.66  E-value=0.00083  Score=44.64  Aligned_cols=93  Identities=14%  Similarity=0.090  Sum_probs=62.1

Q ss_pred             chhhhhcCCCceEEEEeecC--ChhH-HHHH---HHHHHhhcCceEEEEEeCCCcc--hhhhhhhhCCCCCCcceEEEEe
Q 031686           50 TTPLILNSPLKLLWLFAAVH--DSEA-KSIF---QETARAFKGKLLFVYSQIYPKL--KGQIFDYFGVTCYTSRVIAVAS  121 (155)
Q Consensus        50 ~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~---~~vA~~~~~~i~F~~vd~~~~~--~~~~~~~~gl~~~~~P~v~i~~  121 (155)
                      .+.+....++++++.|....  .-.. ...+   .++++.+++.+.++.+|.+...  ...+++.+|+..  +|++.+++
T Consensus         3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~--~Pti~~~~   80 (104)
T cd02953           3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFG--PPTYLFYG   80 (104)
T ss_pred             HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCC--CCEEEEEC
Confidence            34555666767766666542  1222 2233   4677777778999999976421  456778889864  89999998


Q ss_pred             c-CCCeeecCCCCCCHHHHHHHHH
Q 031686          122 I-RKRKKYVLNGELTLSNVKSFAL  144 (155)
Q Consensus       122 ~-~~~~kY~~~~~~t~~~I~~Fi~  144 (155)
                      . +....+.+.|..+.++|.++++
T Consensus        81 ~~~g~~~~~~~G~~~~~~l~~~l~  104 (104)
T cd02953          81 PGGEPEPLRLPGFLTADEFLEALE  104 (104)
T ss_pred             CCCCCCCcccccccCHHHHHHHhC
Confidence            6 3333456678889999988863

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=97.60  E-value=0.00085  Score=55.52  Aligned_cols=103  Identities=11%  Similarity=0.129  Sum_probs=77.1

Q ss_pred             CeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC---ceEEEEEeCCCcchhhhhhhhCCCCCCcc
Q 031686           42 PMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG---KLLFVYSQIYPKLKGQIFDYFGVTCYTSR  115 (155)
Q Consensus        42 ~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~---~i~F~~vd~~~~~~~~~~~~~gl~~~~~P  115 (155)
                      .|.+++.+++........+.++.|...-  .... ...+.++|+.+++   ++.|+.+|.+.  +.++.+.+|+.+  .|
T Consensus         2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~--~P   77 (462)
T TIGR01130         2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE--EKDLAQKYGVSG--YP   77 (462)
T ss_pred             CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC--cHHHHHhCCCcc--cc
Confidence            3667888999988887766666676542  2344 5678888887764   38999999986  578889999974  89


Q ss_pred             eEEEEecCCCe-eecCCCCCCHHHHHHHHHHHHcC
Q 031686          116 VIAVASIRKRK-KYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus       116 ~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                      ++.++... .. .+.+.|..+.++|.+|+++....
T Consensus        78 t~~~~~~g-~~~~~~~~g~~~~~~l~~~i~~~~~~  111 (462)
T TIGR01130        78 TLKIFRNG-EDSVSDYNGPRDADGIVKYMKKQSGP  111 (462)
T ss_pred             EEEEEeCC-ccceeEecCCCCHHHHHHHHHHhcCC
Confidence            99988742 22 35667788999999999987654

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=97.58  E-value=0.00096  Score=45.20  Aligned_cols=83  Identities=8%  Similarity=0.064  Sum_probs=60.7

Q ss_pred             CCCceEEEEeecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCe-eecCC
Q 031686           57 SPLKLLWLFAAVH--DSEA-KSIFQETARAFKG-KLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRK-KYVLN  131 (155)
Q Consensus        57 ~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~-kY~~~  131 (155)
                      .++|.++.|...-  .-.. ...+.++++++++ ++.|+.+|.+.  ...+.+.+|+.  ..|++++++.  |+ .....
T Consensus        23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--~~~l~~~~~V~--~~Pt~~i~~~--g~~~~~~~   96 (111)
T cd02963          23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--ERRLARKLGAH--SVPAIVGIIN--GQVTFYHD   96 (111)
T ss_pred             CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc--cHHHHHHcCCc--cCCEEEEEEC--CEEEEEec
Confidence            3456666676553  2244 6678899999976 48899999886  46788899996  4899998873  33 23346


Q ss_pred             CCCCHHHHHHHHHH
Q 031686          132 GELTLSNVKSFALD  145 (155)
Q Consensus       132 ~~~t~~~I~~Fi~~  145 (155)
                      |..+.+.|.+||++
T Consensus        97 G~~~~~~l~~~i~~  110 (111)
T cd02963          97 SSFTKQHVVDFVRK  110 (111)
T ss_pred             CCCCHHHHHHHHhc
Confidence            77899999999975

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=97.53  E-value=0.0016  Score=52.61  Aligned_cols=123  Identities=14%  Similarity=0.071  Sum_probs=78.5

Q ss_pred             EEEeccCCcCHHHHHHHHHhCCCCCeEecCCCchhhhhcC--CCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeC
Q 031686           18 CFIFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNS--PLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQI   95 (155)
Q Consensus        18 ~~~~y~g~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~--~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~   95 (155)
                      -.+.|+|.++++-|..||..---.+|..++.+.-.+.|..  ..+.++.++..++++..+.|.++|..|+..+.|..+-.
T Consensus       123 ~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~FeeAAe~F~p~IkFfAtfd  202 (383)
T PF01216_consen  123 EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKEFEEAAEHFQPYIKFFATFD  202 (383)
T ss_dssp             EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHHHHHHHHHCTTTSEEEEE-S
T ss_pred             cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHHHHHHHHhhcCceeEEEEec
Confidence            4568999999999999999987788988987554433332  23558888877654558899999999999998887633


Q ss_pred             CCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCC-CCCHHHHHHHHHHHHc
Q 031686           96 YPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNG-ELTLSNVKSFALDFLG  148 (155)
Q Consensus        96 ~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~-~~t~~~I~~Fi~~f~~  148 (155)
                           +.+++.+|++   +--|-.+.+-..+.-.+++ ..|.+.|.+||++-..
T Consensus       203 -----~~vAk~L~lK---~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~r  248 (383)
T PF01216_consen  203 -----KKVAKKLGLK---LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKR  248 (383)
T ss_dssp             -----HHHHHHHT-S---TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S
T ss_pred             -----chhhhhcCcc---ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhch
Confidence                 4678889986   3445555542222222233 5688999999987543

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=97.53  E-value=0.002  Score=40.58  Aligned_cols=88  Identities=15%  Similarity=0.147  Sum_probs=60.8

Q ss_pred             chhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCe
Q 031686           50 TTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRK  126 (155)
Q Consensus        50 ~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~  126 (155)
                      ++........+.++.|....  .-.. ...+.+++++ .+++.|+.+|.+.  ...+.+.||+..  .|++++.... ..
T Consensus         2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~--~~~~~~~~~v~~--~P~~~~~~~g-~~   75 (93)
T cd02947           2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDE--NPELAEEYGVRS--IPTFLFFKNG-KE   75 (93)
T ss_pred             chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCC--ChhHHHhcCccc--ccEEEEEECC-EE
Confidence            34455555556666666553  2345 6788888887 6679999999886  467888899864  8999988742 22


Q ss_pred             eecCCCCCCHHHHHHHH
Q 031686          127 KYVLNGELTLSNVKSFA  143 (155)
Q Consensus       127 kY~~~~~~t~~~I~~Fi  143 (155)
                      ...+.+..+.+.|.+||
T Consensus        76 ~~~~~g~~~~~~l~~~i   92 (93)
T cd02947          76 VDRVVGADPKEELEEFL   92 (93)
T ss_pred             EEEEecCCCHHHHHHHh
Confidence            33345556778888887

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=97.51  E-value=0.00085  Score=44.71  Aligned_cols=81  Identities=19%  Similarity=0.195  Sum_probs=59.0

Q ss_pred             CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCC
Q 031686           57 SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGE  133 (155)
Q Consensus        57 ~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~  133 (155)
                      .+++.++.|...-  .-.. ...|.++|+++++ +.|+.+|.+. .+..+.+.||+.  .+|++.+++..  ....+.|.
T Consensus        17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~-~~~~l~~~~~V~--~~PT~~lf~~g--~~~~~~G~   90 (100)
T cd02999          17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESS-IKPSLLSRYGVV--GFPTILLFNST--PRVRYNGT   90 (100)
T ss_pred             CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCC-CCHHHHHhcCCe--ecCEEEEEcCC--ceeEecCC
Confidence            3445566666542  2345 6788999999875 7888898872 156788999986  48999999853  44556788


Q ss_pred             CCHHHHHHHH
Q 031686          134 LTLSNVKSFA  143 (155)
Q Consensus       134 ~t~~~I~~Fi  143 (155)
                      .+.++|.+||
T Consensus        91 ~~~~~l~~f~  100 (100)
T cd02999          91 RTLDSLAAFY  100 (100)
T ss_pred             CCHHHHHhhC
Confidence            8999999985

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.0017  Score=51.45  Aligned_cols=103  Identities=16%  Similarity=0.172  Sum_probs=76.5

Q ss_pred             CCCeEecCCCchhhhh--cCC-CceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCC
Q 031686           40 IPPMITYSRETTPLIL--NSP-LKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYT  113 (155)
Q Consensus        40 ~P~v~e~~~~~~~~i~--~~~-~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~  113 (155)
                      .|.+.++|..|++...  ++. .|+++.|..+-  ...+ ...+..++.+++|++.++.+|.|.  ...+...||+.  .
T Consensus        22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~--~p~vAaqfgiq--s   97 (304)
T COG3118          22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA--EPMVAAQFGVQ--S   97 (304)
T ss_pred             cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc--chhHHHHhCcC--c
Confidence            4558888988877532  233 47788887662  4566 888999999999999999999997  57889999997  4


Q ss_pred             cceEEEEecCCCeee-cCCCCCCHHHHHHHHHHHHc
Q 031686          114 SRVIAVASIRKRKKY-VLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       114 ~P~v~i~~~~~~~kY-~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +|+++.+.  .|+.- -+.|-...+.|++|+..+..
T Consensus        98 IPtV~af~--dGqpVdgF~G~qPesqlr~~ld~~~~  131 (304)
T COG3118          98 IPTVYAFK--DGQPVDGFQGAQPESQLRQFLDKVLP  131 (304)
T ss_pred             CCeEEEee--CCcCccccCCCCcHHHHHHHHHHhcC
Confidence            89988765  23211 12344567799999998764

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=97.46  E-value=0.0022  Score=43.52  Aligned_cols=96  Identities=11%  Similarity=0.109  Sum_probs=65.7

Q ss_pred             CCeEecCCCchhhhhcCC---CceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           41 PPMITYSRETTPLILNSP---LKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~~---~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      -.+.+++.+++.......   .+.++.|....  .-.. ...+.++|+++. ++.|+.+|.+.  . .+.+.|++.  .+
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~--~-~l~~~~~i~--~~   77 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEK--A-FLVNYLDIK--VL   77 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchh--h-HHHHhcCCC--cC
Confidence            346677777776655443   45666776653  2345 778999999986 48899999985  4 778889986  48


Q ss_pred             ceEEEEecCCCeeecC------C-CCCCHHHHHHHH
Q 031686          115 RVIAVASIRKRKKYVL------N-GELTLSNVKSFA  143 (155)
Q Consensus       115 P~v~i~~~~~~~kY~~------~-~~~t~~~I~~Fi  143 (155)
                      |+++++... .....+      . .+++.+.|++++
T Consensus        78 Pt~~~f~~G-~~v~~~~G~~~~~~~~~~~~~l~~~l  112 (113)
T cd02957          78 PTLLVYKNG-ELIDNIVGFEELGGDDFTTEDLEKFL  112 (113)
T ss_pred             CEEEEEECC-EEEEEEecHHHhCCCCCCHHHHHHHh
Confidence            999988742 111111      1 257888888775

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=97.39  E-value=0.0033  Score=41.76  Aligned_cols=91  Identities=16%  Similarity=0.122  Sum_probs=62.5

Q ss_pred             CchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC---ceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686           49 ETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG---KLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI  122 (155)
Q Consensus        49 ~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~---~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~  122 (155)
                      +++..+ ....+.++.|...-  .-.. ...+.++|+++++   .+.+..+|.+.  +..+.+.+|+..  +|++.+++.
T Consensus         7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~I~~--~Pt~~l~~~   81 (104)
T cd03000           7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA--YSSIASEFGVRG--YPTIKLLKG   81 (104)
T ss_pred             hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc--CHhHHhhcCCcc--ccEEEEEcC
Confidence            344543 33334555555442  1234 5578888888853   48888888875  567788899864  899999864


Q ss_pred             CCCeeecCCCCCCHHHHHHHHHHH
Q 031686          123 RKRKKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       123 ~~~~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                        +..+.+.|..+.++|.+|++++
T Consensus        82 --~~~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          82 --DLAYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             --CCceeecCCCCHHHHHHHHHhh
Confidence              3345566788999999999875

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=97.32  E-value=0.0021  Score=43.47  Aligned_cols=94  Identities=18%  Similarity=0.181  Sum_probs=57.7

Q ss_pred             EecC-CCchhhhhcCC-CceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEe
Q 031686           44 ITYS-RETTPLILNSP-LKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVAS  121 (155)
Q Consensus        44 ~e~~-~~~~~~i~~~~-~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~  121 (155)
                      .+++ .+.++.+.... ...++.|+...+.+..+.|.++|..+|+++.|.+...+     .+.+.++++   .|.++++.
T Consensus         3 ~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~~~-----~~~~~~~~~---~~~vvl~r   74 (107)
T cd03068           3 KQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTFDS-----EIFKSLKVS---PGQLVVFQ   74 (107)
T ss_pred             eEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEChH-----HHHHhcCCC---CCceEEEC
Confidence            3443 34456555544 44466676554322378899999999999999886554     345666765   46778885


Q ss_pred             cCC------CeeecCCCC-CCHHH-HHHHHHH
Q 031686          122 IRK------RKKYVLNGE-LTLSN-VKSFALD  145 (155)
Q Consensus       122 ~~~------~~kY~~~~~-~t~~~-I~~Fi~~  145 (155)
                      +.-      .....+++. .+.++ |.+|+++
T Consensus        75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~  106 (107)
T cd03068          75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE  106 (107)
T ss_pred             cHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence            421      111223444 56655 9999874

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=97.31  E-value=0.0014  Score=47.52  Aligned_cols=67  Identities=24%  Similarity=0.273  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCC-CCHHHHHHHHHHHHc
Q 031686           74 KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGE-LTLSNVKSFALDFLG  148 (155)
Q Consensus        74 ~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~-~t~~~I~~Fi~~f~~  148 (155)
                      .+.|.++|+.+++.+.|+.+...     .+.+.+|++.   |++++.....++...++++ ++.+.|.+||..-.-
T Consensus         9 ~~~f~~~A~~~~~~~~F~~~~~~-----~~~~~~~~~~---p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~   76 (184)
T PF13848_consen    9 FEIFEEAAEKLKGDYQFGVTFNE-----ELAKKYGIKE---PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF   76 (184)
T ss_dssp             HHHHHHHHHHHTTTSEEEEEE-H-----HHHHHCTCSS---SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHhCcCCcEEEEEcHH-----HHHHHhCCCC---CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc
Confidence            78999999999999999998644     4667788863   9999998743444556765 899999999987543

...

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=97.30  E-value=0.0029  Score=41.14  Aligned_cols=88  Identities=17%  Similarity=0.134  Sum_probs=58.8

Q ss_pred             CchhhhhcCC--CceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecC
Q 031686           49 ETTPLILNSP--LKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIR  123 (155)
Q Consensus        49 ~~~~~i~~~~--~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~  123 (155)
                      +++..+....  .++++.|....  .... ...+.++++++...+.|+.+|.+.  ...+.+.||+..  +|++.+++. 
T Consensus         3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~--~Pt~~~~~~-   77 (97)
T cd02984           3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE--LPEISEKFEITA--VPTFVFFRN-   77 (97)
T ss_pred             HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc--CHHHHHhcCCcc--ccEEEEEEC-
Confidence            3455555544  55566666543  2344 678889999877789999999885  567889999864  899999873 


Q ss_pred             CCee-ecCCCCCCHHHHHHHH
Q 031686          124 KRKK-YVLNGELTLSNVKSFA  143 (155)
Q Consensus       124 ~~~k-Y~~~~~~t~~~I~~Fi  143 (155)
                       |+. ..+.| .+.+.|.+.|
T Consensus        78 -g~~~~~~~g-~~~~~l~~~~   96 (97)
T cd02984          78 -GTIVDRVSG-ADPKELAKKV   96 (97)
T ss_pred             -CEEEEEEeC-CCHHHHHHhh
Confidence             332 22222 4567776654

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PLN02309 5'-adenylylsulfate reductase

Probab=97.18  E-value=0.0064  Score=51.23  Aligned_cols=103  Identities=12%  Similarity=0.106  Sum_probs=73.0

Q ss_pred             CCeEecCCCchhhhhc---CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcchhhhhh-hhCCCCC
Q 031686           41 PPMITYSRETTPLILN---SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYPKLKGQIFD-YFGVTCY  112 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~---~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~~~~~~~-~~gl~~~  112 (155)
                      +.|.+++.+++.++..   .+.+.++.|...-  .-.. ...|.++|+++.+. +.|+.+|.+.. ...+.. .|++.  
T Consensus       345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~-~~~la~~~~~I~--  421 (457)
T PLN02309        345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD-QKEFAKQELQLG--  421 (457)
T ss_pred             CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc-chHHHHhhCCCc--
Confidence            5788999999888763   4555566666552  2344 66899999999764 99999998831 345554 68886  


Q ss_pred             CcceEEEEecCCCeeecCCC-CCCHHHHHHHHHHH
Q 031686          113 TSRVIAVASIRKRKKYVLNG-ELTLSNVKSFALDF  146 (155)
Q Consensus       113 ~~P~v~i~~~~~~~kY~~~~-~~t~~~I~~Fi~~f  146 (155)
                      .+|++.++.......-.+.+ .-+.++|..||+.+
T Consensus       422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            48999999753322223443 57899999999875

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=97.14  E-value=0.0074  Score=40.09  Aligned_cols=91  Identities=11%  Similarity=0.083  Sum_probs=63.5

Q ss_pred             CCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686           47 SRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI  122 (155)
Q Consensus        47 ~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~  122 (155)
                      |.+++..+.+.+.+.++.|...-  .-.. ...|.++++++.++ +.|+.+|.+.   ...++.|++..  .|++.++..
T Consensus         6 ~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~---~~~~~~~~v~~--~Pt~~~~~~   80 (102)
T cd02948           6 NQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT---IDTLKRYRGKC--EPTFLFYKN   80 (102)
T ss_pred             CHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC---HHHHHHcCCCc--CcEEEEEEC
Confidence            44566677666766666666542  2345 66888899998854 7899999883   46788999874  799988873


Q ss_pred             CCCe-eecCCCCCCHHHHHHHHHH
Q 031686          123 RKRK-KYVLNGELTLSNVKSFALD  145 (155)
Q Consensus       123 ~~~~-kY~~~~~~t~~~I~~Fi~~  145 (155)
                        |+ ...+.| .+++.|.++|..
T Consensus        81 --g~~~~~~~G-~~~~~~~~~i~~  101 (102)
T cd02948          81 --GELVAVIRG-ANAPLLNKTITE  101 (102)
T ss_pred             --CEEEEEEec-CChHHHHHHHhh
Confidence              33 333444 478888888864

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=97.12  E-value=0.012  Score=44.49  Aligned_cols=116  Identities=12%  Similarity=0.003  Sum_probs=77.4

Q ss_pred             eccCCcCHHHHHHHHHhCC--CCCeEecCCCchhhhhcCCCce-EEEEeecC-C-hhH-HHHHHHHHHhhcCceEEEEEe
Q 031686           21 FSDVSFTISVIDDFISLNK--IPPMITYSRETTPLILNSPLKL-LWLFAAVH-D-SEA-KSIFQETARAFKGKLLFVYSQ   94 (155)
Q Consensus        21 ~y~g~~~~~~l~~fI~~~~--~P~v~e~~~~~~~~i~~~~~~~-v~lf~~~~-~-~~~-~~~~~~vA~~~~~~i~F~~vd   94 (155)
                      .|.|..+.+++.+||+...  -+.-..+++++.+.+-..+.|. +.+|.... . -.. ...+.+++.++ +++.+..+|
T Consensus        93 ~~~G~~~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD  171 (215)
T TIGR02187        93 RYTGIPAGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIE  171 (215)
T ss_pred             EEeecCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEe
Confidence            5667677788888887662  2233456666666655556677 55566543 2 234 55677777663 578899999


Q ss_pred             CCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHH
Q 031686           95 IYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD  145 (155)
Q Consensus        95 ~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~  145 (155)
                      .+.  +..+.+.+|+..  .|++++.+.  +..  +.|..+.+.+.+|+.+
T Consensus       172 ~~~--~~~~~~~~~V~~--vPtl~i~~~--~~~--~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       172 ANE--NPDLAEKYGVMS--VPKIVINKG--VEE--FVGAYPEEQFLEYILS  214 (215)
T ss_pred             CCC--CHHHHHHhCCcc--CCEEEEecC--CEE--EECCCCHHHHHHHHHh
Confidence            886  677888999864  899998652  333  3455677888888764

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=97.08  E-value=0.016  Score=42.58  Aligned_cols=101  Identities=10%  Similarity=0.110  Sum_probs=70.5

Q ss_pred             CCCCCeEecCC-CchhhhhcCCC---ceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCC
Q 031686           38 NKIPPMITYSR-ETTPLILNSPL---KLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVT  110 (155)
Q Consensus        38 ~~~P~v~e~~~-~~~~~i~~~~~---~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~  110 (155)
                      ..+-.+.+++. +++........   ++++.|....  .-.. ...|.++|++|. .+.|+.+|.+.  . .+.+.|++.
T Consensus        59 ~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~--~-~l~~~f~v~  134 (175)
T cd02987          59 RRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASA--T-GASDEFDTD  134 (175)
T ss_pred             CCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccc--h-hhHHhCCCC
Confidence            34567788887 77777665432   4555555442  2344 678999999985 59999999995  3 677888886


Q ss_pred             CCCcceEEEEecCCCe---ee-cC----CCCCCHHHHHHHHHHH
Q 031686          111 CYTSRVIAVASIRKRK---KY-VL----NGELTLSNVKSFALDF  146 (155)
Q Consensus       111 ~~~~P~v~i~~~~~~~---kY-~~----~~~~t~~~I~~Fi~~f  146 (155)
                        .+|+++++..  |+   .+ .+    ..+++.+.|+.|+..+
T Consensus       135 --~vPTlllyk~--G~~v~~~vG~~~~~g~~f~~~~le~~L~~~  174 (175)
T cd02987         135 --ALPALLVYKG--GELIGNFVRVTEDLGEDFDAEDLESFLVEY  174 (175)
T ss_pred             --CCCEEEEEEC--CEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence              4899999884  32   12 11    1279999999998763

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=97.08  E-value=0.011  Score=40.28  Aligned_cols=72  Identities=14%  Similarity=0.056  Sum_probs=53.5

Q ss_pred             hH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCC-CeeecCCCCCCHHHHHHHHHHHHc
Q 031686           72 EA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRK-RKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus        72 ~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~-~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      .. ...+.++|.++ +++.|..+|.+.  ++.+.+.+|+..  .|++.+.+... .....+.|-.+...+.+||+++.+
T Consensus        38 ~~~~~~l~~la~~~-~~i~~~~vd~d~--~~~l~~~~~v~~--vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~i~~  111 (113)
T cd02975          38 EVTKQLLEELSELS-DKLKLEIYDFDE--DKEKAEKYGVER--VPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDIVR  111 (113)
T ss_pred             HHHHHHHHHHHHhc-CceEEEEEeCCc--CHHHHHHcCCCc--CCEEEEEeCCeecceEEEEecCchHHHHHHHHHHHh
Confidence            45 67888888887 679999999986  678889999874  89999987421 111233455678899999998764

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=97.01  E-value=0.016  Score=39.63  Aligned_cols=95  Identities=13%  Similarity=0.135  Sum_probs=61.6

Q ss_pred             hhcCC-CceEEEEeecC-C-hhH-HHHH---HHHHHhhcCceEEEEEeCCCc-----------chhhhhhhhCCCCCCcc
Q 031686           54 ILNSP-LKLLWLFAAVH-D-SEA-KSIF---QETARAFKGKLLFVYSQIYPK-----------LKGQIFDYFGVTCYTSR  115 (155)
Q Consensus        54 i~~~~-~~~v~lf~~~~-~-~~~-~~~~---~~vA~~~~~~i~F~~vd~~~~-----------~~~~~~~~~gl~~~~~P  115 (155)
                      ....+ +|+++.|.... . -.. ...+   .++++.+++++.++.+|.+..           ....+...||+..  +|
T Consensus         9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~--~P   86 (125)
T cd02951           9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF--TP   86 (125)
T ss_pred             HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc--cc
Confidence            34455 66666665443 1 122 2222   245555666788888887642           1246678888864  89


Q ss_pred             eEEEEecC-CCeeecCCCCCCHHHHHHHHHHHHcCC
Q 031686          116 VIAVASIR-KRKKYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       116 ~v~i~~~~-~~~kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      ++++++.. ......+.|..+.+.+.++++.++++-
T Consensus        87 t~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~  122 (125)
T cd02951          87 TVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKA  122 (125)
T ss_pred             EEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhh
Confidence            99999975 223445667788999999999998873

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=96.68  E-value=0.033  Score=37.61  Aligned_cols=68  Identities=16%  Similarity=0.214  Sum_probs=49.5

Q ss_pred             HHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec-CCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686           79 ETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI-RKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus        79 ~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~-~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      ++.+..+..++++.+|....+...+++.++..  .+|.++++++ +....+.+.|.++++.+.+-++.+..
T Consensus        44 ~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~--~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~  112 (114)
T cd02958          44 SVKEFIRENFIFWQCDIDSSEGQRFLQSYKVD--KYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE  112 (114)
T ss_pred             HHHHHHHhCEEEEEecCCCccHHHHHHHhCcc--CCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence            45555555677777888765566778888875  4999999998 43345667788899988887777654

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=96.66  E-value=0.034  Score=34.76  Aligned_cols=76  Identities=16%  Similarity=0.169  Sum_probs=54.1

Q ss_pred             EEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHH
Q 031686           62 LWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSN  138 (155)
Q Consensus        62 v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~  138 (155)
                      +.+|....  .-.. ...+.++|++++..+.+..+|.++  .....+.+|+..  .|++.+ +   ++ ..+.|..+.+.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~--vPt~~~-~---g~-~~~~G~~~~~~   73 (82)
T TIGR00411         3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME--NPQKAMEYGIMA--VPAIVI-N---GD-VEFIGAPTKEE   73 (82)
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc--CHHHHHHcCCcc--CCEEEE-C---CE-EEEecCCCHHH
Confidence            34455442  2345 778888999988889999999876  567778899874  799876 3   32 23456668899


Q ss_pred             HHHHHHHH
Q 031686          139 VKSFALDF  146 (155)
Q Consensus       139 I~~Fi~~f  146 (155)
                      |.++++..
T Consensus        74 l~~~l~~~   81 (82)
T TIGR00411        74 LVEAIKKR   81 (82)
T ss_pred             HHHHHHhh
Confidence            99888764

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=96.66  E-value=0.016  Score=39.85  Aligned_cols=61  Identities=5%  Similarity=-0.042  Sum_probs=46.9

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI  122 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~  122 (155)
                      +.++++-|...-  .-.. ...|.++|.++.+.+.|+.+|.+.  ++.+.+.+|+..  +|++.++..
T Consensus        14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~--~~~la~~~~V~~--iPTf~~fk~   77 (114)
T cd02954          14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE--VPDFNKMYELYD--PPTVMFFFR   77 (114)
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC--CHHHHHHcCCCC--CCEEEEEEC
Confidence            334455554432  2345 678999999999889999999997  688999999975  899999884

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PTZ00051 thioredoxin; Provisional

Probab=96.65  E-value=0.015  Score=37.76  Aligned_cols=74  Identities=12%  Similarity=0.163  Sum_probs=53.1

Q ss_pred             eEecC-CCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           43 MITYS-RETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        43 v~e~~-~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      |.+++ .+.+..+.+.+.+.++.|....  .... ...+.++|+++. ++.|+.+|.+.  ...+.+.||+..  +|+++
T Consensus         2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~--~~~~~~~~~v~~--~Pt~~   76 (98)
T PTZ00051          2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDE--LSEVAEKENITS--MPTFK   76 (98)
T ss_pred             eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcc--hHHHHHHCCCce--eeEEE
Confidence            34444 4566777776666677776553  2344 677888888865 48999999986  578889999964  89998


Q ss_pred             EEe
Q 031686          119 VAS  121 (155)
Q Consensus       119 i~~  121 (155)
                      ++.
T Consensus        77 ~~~   79 (98)
T PTZ00051         77 VFK   79 (98)
T ss_pred             EEe
Confidence            886

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=96.56  E-value=0.038  Score=36.72  Aligned_cols=90  Identities=10%  Similarity=-0.036  Sum_probs=56.1

Q ss_pred             chhhhhcC--CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcc-hhhhhhhhCCCCCCcceEEEEecC
Q 031686           50 TTPLILNS--PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKL-KGQIFDYFGVTCYTSRVIAVASIR  123 (155)
Q Consensus        50 ~~~~i~~~--~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~-~~~~~~~~gl~~~~~P~v~i~~~~  123 (155)
                      .+......  ++++++-|...-  .-.. ...+.++|+++ +.+.|+.+|.+... ...+++.+++..  +|+++++.. 
T Consensus         5 ~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~--~Pt~~~~~~-   80 (103)
T cd02985           5 ELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIE--VPHFLFYKD-   80 (103)
T ss_pred             HHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCc--CCEEEEEeC-
Confidence            34444443  444566665442  2344 67888999998 67999999988521 236788899874  899888852 


Q ss_pred             CCe-eecCCCCCCHHHHHHHHHH
Q 031686          124 KRK-KYVLNGELTLSNVKSFALD  145 (155)
Q Consensus       124 ~~~-kY~~~~~~t~~~I~~Fi~~  145 (155)
                       |+ ...+.| ..++.|.+-+..
T Consensus        81 -G~~v~~~~G-~~~~~l~~~~~~  101 (103)
T cd02985          81 -GEKIHEEEG-IGPDELIGDVLY  101 (103)
T ss_pred             -CeEEEEEeC-CCHHHHHHHHHh
Confidence             33 233334 456666665543

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=96.48  E-value=0.026  Score=40.70  Aligned_cols=79  Identities=15%  Similarity=0.124  Sum_probs=57.6

Q ss_pred             CeEecCCCchhhhhcCC--CceEEEEeecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCcchhhhhhhhCCCC----
Q 031686           42 PMITYSRETTPLILNSP--LKLLWLFAAVH--DSEA-KSIFQETARAFKG-KLLFVYSQIYPKLKGQIFDYFGVTC----  111 (155)
Q Consensus        42 ~v~e~~~~~~~~i~~~~--~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~~~~~~~~~gl~~----  111 (155)
                      .+.+++++++.......  .+.++.|....  .-.. ...+.++|+++.+ ++.|+.+|.+.  +..+.+.|++..    
T Consensus        29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~--~~~la~~~~V~~~~~v  106 (152)
T cd02962          29 HIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR--FPNVAEKFRVSTSPLS  106 (152)
T ss_pred             ccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC--CHHHHHHcCceecCCc
Confidence            56778888888766432  34466666543  2344 6789999999875 59999999986  678889999864    


Q ss_pred             CCcceEEEEec
Q 031686          112 YTSRVIAVASI  122 (155)
Q Consensus       112 ~~~P~v~i~~~  122 (155)
                      ..+|+++++..
T Consensus       107 ~~~PT~ilf~~  117 (152)
T cd02962         107 KQLPTIILFQG  117 (152)
T ss_pred             CCCCEEEEEEC
Confidence            34899998874

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=96.41  E-value=0.082  Score=39.51  Aligned_cols=102  Identities=13%  Similarity=0.079  Sum_probs=68.0

Q ss_pred             HhCCCCCeEecCCCchhh-hhcCCC--ceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCC
Q 031686           36 SLNKIPPMITYSRETTPL-ILNSPL--KLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGV  109 (155)
Q Consensus        36 ~~~~~P~v~e~~~~~~~~-i~~~~~--~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl  109 (155)
                      ++..+..|.+++.+++.. +...+.  ++++-|+...  .-.. ...|.++|++|. .+.|+.++++.     ....|++
T Consensus        77 ~~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~-----~~~~~~i  150 (192)
T cd02988          77 EKSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQ-----CIPNYPD  150 (192)
T ss_pred             hhCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHH-----hHhhCCC
Confidence            344577888888877764 333332  4555555442  2345 678999999986 58999999884     2467777


Q ss_pred             CCCCcceEEEEecCCC-eee----cCCC-CCCHHHHHHHHHH
Q 031686          110 TCYTSRVIAVASIRKR-KKY----VLNG-ELTLSNVKSFALD  145 (155)
Q Consensus       110 ~~~~~P~v~i~~~~~~-~kY----~~~~-~~t~~~I~~Fi~~  145 (155)
                      .  .+|+++++....- ..+    .+.| .+|.++|+.++..
T Consensus       151 ~--~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         151 K--NLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             C--CCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence            5  4999999984211 122    1123 6999999998875

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=96.36  E-value=0.034  Score=37.76  Aligned_cols=80  Identities=16%  Similarity=0.104  Sum_probs=56.0

Q ss_pred             CeEecCCCchhhhhcCCC-ceEEEEeecC--ChhH-HHHHHHHHHhhcC---ceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           42 PMITYSRETTPLILNSPL-KLLWLFAAVH--DSEA-KSIFQETARAFKG---KLLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        42 ~v~e~~~~~~~~i~~~~~-~~v~lf~~~~--~~~~-~~~~~~vA~~~~~---~i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      .+.+++.++++....... +.++.|...-  .-.. ...|.++|+++++   .+.|+.+|.+...+..+.+.||+.  ..
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~--~~   79 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVT--GY   79 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCC--CC
Confidence            367889889888766654 4466666543  2234 6678889988763   588888886532256678889986  48


Q ss_pred             ceEEEEecC
Q 031686          115 RVIAVASIR  123 (155)
Q Consensus       115 P~v~i~~~~  123 (155)
                      |++.++...
T Consensus        80 Pt~~lf~~~   88 (114)
T cd02992          80 PTLRYFPPF   88 (114)
T ss_pred             CEEEEECCC
Confidence            999999863

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>smart00594 UAS UAS domain

Probab=96.20  E-value=0.072  Score=36.61  Aligned_cols=62  Identities=11%  Similarity=0.280  Sum_probs=43.9

Q ss_pred             HHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCe-ee----cCCCCCCHHHHHHHH
Q 031686           80 TARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRK-KY----VLNGELTLSNVKSFA  143 (155)
Q Consensus        80 vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~-kY----~~~~~~t~~~I~~Fi  143 (155)
                      +.+-.+.++++..+|....+..++++.+++.  .+|.++++++.+++ .+    ..+|.++++.+..++
T Consensus        55 V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~--~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       55 VKSLIRENFIFWQVDVDTSEGQRVSQFYKLD--SFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             HHHHHHcCEEEEEecCCChhHHHHHHhcCcC--CCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence            3344444677777887765667788888886  49999999986542 22    345788999888775

>PHA02278 thioredoxin-like protein

Probab=96.19  E-value=0.067  Score=35.90  Aligned_cols=90  Identities=8%  Similarity=0.039  Sum_probs=57.8

Q ss_pred             CchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcc--hhhhhhhhCCCCCCcceEEEEecC
Q 031686           49 ETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKL--KGQIFDYFGVTCYTSRVIAVASIR  123 (155)
Q Consensus        49 ~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~--~~~~~~~~gl~~~~~P~v~i~~~~  123 (155)
                      +.+.++...+.+.++-|...-  .-.. ...+.++|+++..+..|+.+|.+...  ...+.+.|++..  +|++++++. 
T Consensus         5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~--iPT~i~fk~-   81 (103)
T PHA02278          5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMS--TPVLIGYKD-   81 (103)
T ss_pred             HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCcc--ccEEEEEEC-
Confidence            345556666666665565442  2234 56788888876556678888887521  256788999974  899999984 


Q ss_pred             CCe-eecCCCCCCHHHHHHH
Q 031686          124 KRK-KYVLNGELTLSNVKSF  142 (155)
Q Consensus       124 ~~~-kY~~~~~~t~~~I~~F  142 (155)
                       |+ .-.+.|..+.+.|.++
T Consensus        82 -G~~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         82 -GQLVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             -CEEEEEEeCCCCHHHHHhh
Confidence             32 2244566777777654

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=96.12  E-value=0.12  Score=36.79  Aligned_cols=89  Identities=7%  Similarity=-0.027  Sum_probs=54.3

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCC--
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNG--  132 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~--  132 (155)
                      +.++++=|...-  .-.. ...|.++|+++.+...|+.+|.++  ++.+.+.|++.. ..|.+.+.+..........|  
T Consensus        23 ~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe--~~dla~~y~I~~-~~t~~~ffk~g~~~vd~~tG~~   99 (142)
T PLN00410         23 ERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE--VPDFNTMYELYD-PCTVMFFFRNKHIMIDLGTGNN   99 (142)
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC--CHHHHHHcCccC-CCcEEEEEECCeEEEEEecccc
Confidence            334455554432  2234 568999999999889999999997  789999999972 24455466532111122223  


Q ss_pred             ------CCCHHHHHHHHHHHHcC
Q 031686          133 ------ELTLSNVKSFALDFLGD  149 (155)
Q Consensus       133 ------~~t~~~I~~Fi~~f~~G  149 (155)
                            ..+.+++.+=++.+..|
T Consensus       100 ~k~~~~~~~k~~l~~~i~~~~~~  122 (142)
T PLN00410        100 NKINWALKDKQEFIDIVETVYRG  122 (142)
T ss_pred             cccccccCCHHHHHHHHHHHHHH
Confidence                  24566655555555443

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.2  Score=40.07  Aligned_cols=117  Identities=15%  Similarity=0.189  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhCCCCCeEecCCCchhhhhcCCCce--EEEEeecC--C-----hhH-HHHHHHHHHhhcC--------ceE
Q 031686           28 ISVIDDFISLNKIPPMITYSRETTPLILNSPLKL--LWLFAAVH--D-----SEA-KSIFQETARAFKG--------KLL   89 (155)
Q Consensus        28 ~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~--v~lf~~~~--~-----~~~-~~~~~~vA~~~~~--------~i~   89 (155)
                      .+++.+-+.-.+-.-|..++.+++.++...+.+.  ++.++...  .     -.+ .+.|.-+|..++.        ++.
T Consensus        27 s~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklF  106 (331)
T KOG2603|consen   27 SNKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLF  106 (331)
T ss_pred             HHHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEE
Confidence            3456665553444558899999999988765333  44444432  1     123 6778888887652        689


Q ss_pred             EEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeec---CCC---CCCHHHHHHHHHHHHc
Q 031686           90 FVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYV---LNG---ELTLSNVKSFALDFLG  148 (155)
Q Consensus        90 F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~---~~~---~~t~~~I~~Fi~~f~~  148 (155)
                      |+.||-++  .++..+.|++.  .+|.+.+..+..+.+=.   +++   ...+|++.+|+.+.-+
T Consensus       107 F~~Vd~~e--~p~~Fq~l~ln--~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk  167 (331)
T KOG2603|consen  107 FCMVDYDE--SPQVFQQLNLN--NVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK  167 (331)
T ss_pred             EEEEeccc--cHHHHHHhccc--CCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence            99999996  67889999996  48999999875442211   221   2568999999998643

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=95.79  E-value=0.032  Score=37.16  Aligned_cols=85  Identities=14%  Similarity=0.177  Sum_probs=49.5

Q ss_pred             CCCceEEEEeecC-C----hhH-HHHHHHHHHhhcCceEEEEEeCCCcc------------------hhhhhhhhCCCCC
Q 031686           57 SPLKLLWLFAAVH-D----SEA-KSIFQETARAFKGKLLFVYSQIYPKL------------------KGQIFDYFGVTCY  112 (155)
Q Consensus        57 ~~~~~v~lf~~~~-~----~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~------------------~~~~~~~~gl~~~  112 (155)
                      .+++.+++|.+.. .    ..+ .....++++..++++.++.++.+...                  ...+++.+|+.+ 
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g-   82 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG-   82 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S-
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc-
Confidence            3456677777654 2    122 23333566666666777777666421                  134678889875 


Q ss_pred             CcceEEEEecCCCeeecCCCCCCHHHHHHHH
Q 031686          113 TSRVIAVASIRKRKKYVLNGELTLSNVKSFA  143 (155)
Q Consensus       113 ~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi  143 (155)
                       .|++++++.+....+.+.|-.+++++.+++
T Consensus        83 -tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   83 -TPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             -SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             -cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence             799999985433345567778888887764

...

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=95.70  E-value=0.068  Score=42.76  Aligned_cols=117  Identities=10%  Similarity=0.061  Sum_probs=76.4

Q ss_pred             EeccCCcCHHHHHHHHHhCCCCCeEecCC-CchhhhhcCCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCCc
Q 031686           20 IFSDVSFTISVIDDFISLNKIPPMITYSR-ETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPK   98 (155)
Q Consensus        20 ~~y~g~~~~~~l~~fI~~~~~P~v~e~~~-~~~~~i~~~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~~   98 (155)
                      -.|-|.+..+.|.+||++..--.+.|+.. +..+.+...++..+++.+...++...+.++.||.-.|++..|...-++..
T Consensus        87 rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr~dc~f~V~~gD~~  166 (375)
T KOG0912|consen   87 REYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLRDDCVFLVGFGDLL  166 (375)
T ss_pred             hhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHhhccEEEeeccccc
Confidence            36788899999999999997777888864 45666666566667777765443446688999999999999888766631


Q ss_pred             chhhhhhhhCCCCCCcceEEEEecCCCee-ecCCCCC-CHHHHHHHHHH
Q 031686           99 LKGQIFDYFGVTCYTSRVIAVASIRKRKK-YVLNGEL-TLSNVKSFALD  145 (155)
Q Consensus        99 ~~~~~~~~~gl~~~~~P~v~i~~~~~~~k-Y~~~~~~-t~~~I~~Fi~~  145 (155)
                        ..      ......+ +.+.+++.... ..+.|.+ +-+.|.+||++
T Consensus       167 --~~------~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~d  206 (375)
T KOG0912|consen  167 --KP------HEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQD  206 (375)
T ss_pred             --cC------CCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHh
Confidence              00      1111122 34455432211 1345554 56888888876

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=95.61  E-value=0.33  Score=34.71  Aligned_cols=87  Identities=15%  Similarity=0.176  Sum_probs=55.6

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcc--------------------hhhhhhhhCCCCCC
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYPKL--------------------KGQIFDYFGVTCYT  113 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~--------------------~~~~~~~~gl~~~~  113 (155)
                      +++.++.|....  .-.. ...+.++++++.+. +.++.++.+...                    ...+.+.||+.  .
T Consensus        61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~--~  138 (173)
T PRK03147         61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVG--P  138 (173)
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC--C
Confidence            445566666443  2244 66788888888653 666666554211                    23455777775  4


Q ss_pred             cceEEEEecCCCeeecCCCCCCHHHHHHHHHHH
Q 031686          114 SRVIAVASIRKRKKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       114 ~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      .|...+++.+..-.+...|..+.+.+.++++++
T Consensus       139 ~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        139 LPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             cCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence            799998986533334456778999999998865

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=95.22  E-value=0.28  Score=36.99  Aligned_cols=72  Identities=11%  Similarity=0.051  Sum_probs=49.6

Q ss_pred             hH-HHHHHHHHHhhcC-ceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHH
Q 031686           72 EA-KSIFQETARAFKG-KLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus        72 ~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      .. ...+.++|+++.+ ++.++-+|.+.  ...+.+.+|+..  .|++++++........+.|..+.+.+.+||+.++
T Consensus        38 ~~~~p~l~~la~~~~~~~i~~v~vd~~~--~~~l~~~~~V~~--~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~  111 (215)
T TIGR02187        38 KETEQLLEELSEVSPKLKLEIYDFDTPE--DKEEAEKYGVER--VPTTIILEEGKDGGIRYTGIPAGYEFAALIEDIV  111 (215)
T ss_pred             HHHHHHHHHHHhhCCCceEEEEecCCcc--cHHHHHHcCCCc--cCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHHH
Confidence            45 6788899998842 24455555554  678899999974  8999998742111123456677888999998884

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=94.97  E-value=0.31  Score=39.16  Aligned_cols=117  Identities=9%  Similarity=-0.007  Sum_probs=66.8

Q ss_pred             EEEeccCCcCHHHHHHHHHhCCCCCeEecCCCchh-hhhcCCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCC
Q 031686           18 CFIFSDVSFTISVIDDFISLNKIPPMITYSRETTP-LILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIY   96 (155)
Q Consensus        18 ~~~~y~g~~~~~~l~~fI~~~~~P~v~e~~~~~~~-~i~~~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~   96 (155)
                      ....|.|+++.++|..|......|++.+++....+ .-+.....+.++|+...+..-.++|.++|.+.   +..+..-+.
T Consensus       111 ~a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~PL~d~fidAASe~---~~~a~FfSa  187 (468)
T KOG4277|consen  111 HAIDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTGEGPLFDAFIDAASEK---FSVARFFSA  187 (468)
T ss_pred             eeeecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCCCCcHHHHHHHHhhhh---eeeeeeecc
Confidence            34578999999999999999999999999873322 12233333444444433222266888888752   333332222


Q ss_pred             Ccchhhhh-hhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHH
Q 031686           97 PKLKGQIF-DYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD  145 (155)
Q Consensus        97 ~~~~~~~~-~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~  145 (155)
                      .   .+++ ++  .+....|++++.+-   +.|....+-..+.|.+||+.
T Consensus       188 s---eeVaPe~--~~~kempaV~VFKD---etf~i~de~dd~dLseWinR  229 (468)
T KOG4277|consen  188 S---EEVAPEE--NDAKEMPAVAVFKD---ETFEIEDEGDDEDLSEWINR  229 (468)
T ss_pred             c---cccCCcc--cchhhccceEEEcc---ceeEEEecCchhHHHHHHhH
Confidence            1   0111 11  11124799988873   33433323345667777754

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=94.66  E-value=0.52  Score=32.45  Aligned_cols=98  Identities=10%  Similarity=0.020  Sum_probs=58.4

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCc---------chhhhhhhhCCC
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPK---------LKGQIFDYFGVT  110 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~---------~~~~~~~~~gl~  110 (155)
                      +.+++.+.+.+....+...++.|....  .=.. ...|.+++++.+  ..+..+|.+..         +...+.+.+++.
T Consensus         8 ~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~--~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~   85 (122)
T TIGR01295         8 LEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTK--APIYYIDSENNGSFEMSSLNDLTAFRSRFGIP   85 (122)
T ss_pred             ceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcC--CcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence            455676677777777766555554432  2234 567888888744  45666666531         112444556643


Q ss_pred             --CCCcceEEEEecCCCe-eecCCC-CCCHHHHHHHHH
Q 031686          111 --CYTSRVIAVASIRKRK-KYVLNG-ELTLSNVKSFAL  144 (155)
Q Consensus       111 --~~~~P~v~i~~~~~~~-kY~~~~-~~t~~~I~~Fi~  144 (155)
                        -...|++++++.  |+ .-...| ..+.++|.+|+.
T Consensus        86 ~~i~~~PT~v~~k~--Gk~v~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        86 TSFMGTPTFVHITD--GKQVSVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             ccCCCCCEEEEEeC--CeEEEEEeCCCCCHHHHHHHhh
Confidence              234899998884  32 223344 568999999874

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>TIGR02740 TraF-like TraF-like protein

Probab=94.42  E-value=0.74  Score=36.22  Aligned_cols=88  Identities=11%  Similarity=0.021  Sum_probs=58.0

Q ss_pred             CceEEEEeecC-C-hhH-HHHHHHHHHhhcCceEEEEEeCCCc-------chhhhhhhhCCCCCCcceEEEEecCCCeee
Q 031686           59 LKLLWLFAAVH-D-SEA-KSIFQETARAFKGKLLFVYSQIYPK-------LKGQIFDYFGVTCYTSRVIAVASIRKRKKY  128 (155)
Q Consensus        59 ~~~v~lf~~~~-~-~~~-~~~~~~vA~~~~~~i~F~~vd~~~~-------~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY  128 (155)
                      .+.++.|.... . -.. ...+.++++++.-.+.++.+|+...       ....+.+.||+..  +|++.+++..++...
T Consensus       167 k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~--vPtl~Lv~~~~~~v~  244 (271)
T TIGR02740       167 KSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRT--VPAVFLADPDPNQFT  244 (271)
T ss_pred             CeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCc--CCeEEEEECCCCEEE
Confidence            34555555442 1 234 6688899999875666666665421       0134678889864  899999997544444


Q ss_pred             cC-CCCCCHHHHHHHHHHHHc
Q 031686          129 VL-NGELTLSNVKSFALDFLG  148 (155)
Q Consensus       129 ~~-~~~~t~~~I~~Fi~~f~~  148 (155)
                      .. .|.++.+.|.+.+.....
T Consensus       245 ~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       245 PIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             EEEeCCCCHHHHHHHHHHHhc
Confidence            33 367899999999887754

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=94.22  E-value=0.78  Score=39.49  Aligned_cols=106  Identities=9%  Similarity=0.023  Sum_probs=66.2

Q ss_pred             CCCCeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCC-----C------------
Q 031686           39 KIPPMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG-KLLFVYSQIY-----P------------   97 (155)
Q Consensus        39 ~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~-----~------------   97 (155)
                      .+|.+.-.+.+--....+.++++++-|...-  .-.. ...+.+++++++. ++.++.+..+     .            
T Consensus        37 ~lP~f~l~D~dG~~v~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~  116 (521)
T PRK14018         37 TLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGL  116 (521)
T ss_pred             CCCCeEeecCCCceeeccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhC
Confidence            4677766655444444556666766666442  2233 6678888888863 4555544320     0            


Q ss_pred             ---------cchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHH
Q 031686           98 ---------KLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus        98 ---------~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                               .....+.+.||+.  .+|+.+|++.+....+.+.|.++.+.|.++|+.-
T Consensus       117 ~y~~~pV~~D~~~~lak~fgV~--giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~  172 (521)
T PRK14018        117 DYPKLPVLTDNGGTLAQSLNIS--VYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP  172 (521)
T ss_pred             CCcccceeccccHHHHHHcCCC--CcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence                     0023455677775  4899999987543456667888999999999943

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=93.87  E-value=0.59  Score=32.26  Aligned_cols=66  Identities=14%  Similarity=0.169  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhhcCceEEEEEeCCCcc-----hhhhhhhhCCCCCCcceEEEEecCCCeeecCCCC-CCHHHHHHHH
Q 031686           74 KSIFQETARAFKGKLLFVYSQIYPKL-----KGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGE-LTLSNVKSFA  143 (155)
Q Consensus        74 ~~~~~~vA~~~~~~i~F~~vd~~~~~-----~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~-~t~~~I~~Fi  143 (155)
                      ...+.+++.++.+++.|+.+|.+...     ...+...+++. ..+|++.+++.  +.+- .+++ ++.+.+..|.
T Consensus        47 ~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~-~~iPT~~~~~~--~~~l-~~~~c~~~~~~~~~~  118 (119)
T cd02952          47 EPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLT-TGVPTLLRWKT--PQRL-VEDECLQADLVEMFF  118 (119)
T ss_pred             chhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcc-cCCCEEEEEcC--Ccee-cchhhcCHHHHHHhh
Confidence            56788899999878999999987411     34667778886 45999999963  3222 1223 5667777665

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.59  E-value=1.2  Score=36.48  Aligned_cols=96  Identities=16%  Similarity=0.198  Sum_probs=70.1

Q ss_pred             hhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCee
Q 031686           51 TPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKK  127 (155)
Q Consensus        51 ~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~k  127 (155)
                      .........+.++.|..+-  .-.+ ...++++|+.+++.+.++.+|.+.  ...+.+.+++.+  +|++.+.... .+.
T Consensus        40 ~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~--~~~~~~~y~i~g--fPtl~~f~~~-~~~  114 (383)
T KOG0191|consen   40 FDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDE--HKDLCEKYGIQG--FPTLKVFRPG-KKP  114 (383)
T ss_pred             HHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchh--hHHHHHhcCCcc--CcEEEEEcCC-Cce
Confidence            3344455556677776652  2234 678889999999999999999986  678899999975  8999998864 233


Q ss_pred             ecCCCCCCHHHHHHHHHHHHcCCC
Q 031686          128 YVLNGELTLSNVKSFALDFLGDKL  151 (155)
Q Consensus       128 Y~~~~~~t~~~I~~Fi~~f~~Gkl  151 (155)
                      ..+.+.-+.+.+..|+...+...+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~  138 (383)
T KOG0191|consen  115 IDYSGPRNAESLAEFLIKELEPSV  138 (383)
T ss_pred             eeccCcccHHHHHHHHHHhhcccc
Confidence            345566788999999888765543

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=93.41  E-value=1.7  Score=29.70  Aligned_cols=68  Identities=9%  Similarity=0.064  Sum_probs=46.5

Q ss_pred             HHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCe---eecCCCCCCHHHHHHHHHHHHcC
Q 031686           80 TARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRK---KYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus        80 vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~---kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                      +.+-....+++.-.|....+..++...++..  .+|.++++.+.+++   .-.+.|.++++++..-++.+.+.
T Consensus        45 v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~--~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~  115 (116)
T cd02991          45 VIEYINTRMLFWACSVAKPEGYRVSQALRER--TYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA  115 (116)
T ss_pred             HHHHHHcCEEEEEEecCChHHHHHHHHhCCC--CCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence            3333444576666777765566777888776  59999999764332   22456789999998888877653

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=92.96  E-value=1.3  Score=30.38  Aligned_cols=61  Identities=10%  Similarity=0.028  Sum_probs=45.2

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI  122 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~  122 (155)
                      ++++++=|...-  .-.. ...|.++|+++++...|..+|.++  .+.+.+.+++..  .|+.+++..
T Consensus        14 ~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe--v~dva~~y~I~a--mPtfvffkn   77 (114)
T cd02986          14 EKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK--VPVYTQYFDISY--IPSTIFFFN   77 (114)
T ss_pred             CCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc--cHHHHHhcCcee--CcEEEEEEC
Confidence            334455554432  2344 578999999998779999999997  788999999963  698887763

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=92.59  E-value=3.5  Score=33.82  Aligned_cols=130  Identities=10%  Similarity=0.045  Sum_probs=82.9

Q ss_pred             eEEEeccCCcCHHHHHHHHHhCCCCC--------eEecCCCchhhhhcCC-CceEEEEeecC--ChhH-HHHHHHHHHhh
Q 031686           17 FCFIFSDVSFTISVIDDFISLNKIPP--------MITYSRETTPLILNSP-LKLLWLFAAVH--DSEA-KSIFQETARAF   84 (155)
Q Consensus        17 ~~~~~y~g~~~~~~l~~fI~~~~~P~--------v~e~~~~~~~~i~~~~-~~~v~lf~~~~--~~~~-~~~~~~vA~~~   84 (155)
                      .-...|.|..+.+.+..|+....-|.        +.+++.+++...-... ...++.|..+.  .-.. ...+.++|+.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~  191 (383)
T KOG0191|consen  112 KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLL  191 (383)
T ss_pred             CceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHh
Confidence            34567888889999999988876554        4445555555433333 23344443332  1233 56788888877


Q ss_pred             c--CceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCC
Q 031686           85 K--GKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus        85 ~--~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      +  ..+....+|.+.  .....+.+++.  .+|++.+......--+.+++.-+.+.|.+|+++...-.
T Consensus       192 ~~~~~v~~~~~d~~~--~~~~~~~~~v~--~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~  255 (383)
T KOG0191|consen  192 KSKENVELGKIDATV--HKSLASRLEVR--GYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN  255 (383)
T ss_pred             ccCcceEEEeeccch--HHHHhhhhccc--CCceEEEecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence            5  457777777664  45667788886  48999877753220122344568999999999886553

>PF13728 TraF: F plasmid transfer operon protein

Probab=91.98  E-value=1.9  Score=32.73  Aligned_cols=78  Identities=17%  Similarity=0.225  Sum_probs=53.3

Q ss_pred             EEEEeecC-Ch-hH-HHHHHHHHHhhcCceEEEEEeCCCc-------chhhhhhhhCCCCCCcceEEEEecCCCeeecCC
Q 031686           62 LWLFAAVH-DS-EA-KSIFQETARAFKGKLLFVYSQIYPK-------LKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLN  131 (155)
Q Consensus        62 v~lf~~~~-~~-~~-~~~~~~vA~~~~~~i~F~~vd~~~~-------~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~  131 (155)
                      +++|+... .+ .. ...++.+|++|.=.+..+.+|+...       ....+.+.||+.  ..|++.+++..++..+++.
T Consensus       124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~--~~Pal~Lv~~~~~~~~pv~  201 (215)
T PF13728_consen  124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVK--VTPALFLVNPNTKKWYPVS  201 (215)
T ss_pred             EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCC--cCCEEEEEECCCCeEEEEe
Confidence            56666554 22 34 6788889999865677777775310       024567789986  5899999998765566655


Q ss_pred             -CCCCHHHHHH
Q 031686          132 -GELTLSNVKS  141 (155)
Q Consensus       132 -~~~t~~~I~~  141 (155)
                       |-++.++|.+
T Consensus       202 ~G~~s~~~L~~  212 (215)
T PF13728_consen  202 QGFMSLDELED  212 (215)
T ss_pred             eecCCHHHHHH
Confidence             6788888764

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=91.45  E-value=2.7  Score=36.55  Aligned_cols=67  Identities=6%  Similarity=0.101  Sum_probs=48.3

Q ss_pred             HHHHHhhcCceEEEEEeCCCc--chhhhhhhhCCCCCCcceEEEEecCCCe--eecCCCCCCHHHHHHHHHHHH
Q 031686           78 QETARAFKGKLLFVYSQIYPK--LKGQIFDYFGVTCYTSRVIAVASIRKRK--KYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus        78 ~~vA~~~~~~i~F~~vd~~~~--~~~~~~~~~gl~~~~~P~v~i~~~~~~~--kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      .+++++++ ++.++.+|.+..  ....+++.||+..  .|++++++.+...  .+...|..+++++.+++++..
T Consensus       500 ~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g--~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~  570 (571)
T PRK00293        500 PQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLG--LPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ  570 (571)
T ss_pred             HHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCC--CCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence            35566665 588888887642  2457788899875  8999999864332  255667889999999998754

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=90.85  E-value=3.8  Score=32.08  Aligned_cols=83  Identities=13%  Similarity=0.115  Sum_probs=55.0

Q ss_pred             EEEEeecC-Ch-hH-HHHHHHHHHhhcCceEEEEEeCCCc-c------hhhhhhhhCCCCCCcceEEEEecCCCeeecCC
Q 031686           62 LWLFAAVH-DS-EA-KSIFQETARAFKGKLLFVYSQIYPK-L------KGQIFDYFGVTCYTSRVIAVASIRKRKKYVLN  131 (155)
Q Consensus        62 v~lf~~~~-~~-~~-~~~~~~vA~~~~~~i~F~~vd~~~~-~------~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~  131 (155)
                      +++|+... .. .+ .-.++..|++|.=.+..+.+|+... .      ...+++.||++  ..|++.+++..++..+++.
T Consensus       154 L~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~--~~Pal~Lv~~~t~~~~pv~  231 (256)
T TIGR02739       154 LFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVK--YFPALYLVNPKSQKMSPLA  231 (256)
T ss_pred             EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCc--cCceEEEEECCCCcEEEEe
Confidence            55555543 22 33 6677888888876777888887631 0      12356788885  4899999998766666665


Q ss_pred             -CCCCHHHHHHHHHHH
Q 031686          132 -GELTLSNVKSFALDF  146 (155)
Q Consensus       132 -~~~t~~~I~~Fi~~f  146 (155)
                       |-+|.++|.+=|..+
T Consensus       232 ~G~iS~deL~~Ri~~v  247 (256)
T TIGR02739       232 YGFISQDELKERILNV  247 (256)
T ss_pred             eccCCHHHHHHHHHHH
Confidence             678888775544433

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=90.23  E-value=2  Score=28.90  Aligned_cols=78  Identities=12%  Similarity=0.131  Sum_probs=51.8

Q ss_pred             ceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCC-eeecCCCCCC
Q 031686           60 KLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKR-KKYVLNGELT  135 (155)
Q Consensus        60 ~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~-~kY~~~~~~t  135 (155)
                      ++++-|+..-  .-.. .-.+.++|.+|.+ +.|+.+|.++  ...+++.+++..  .|++.++..... .++.   .-+
T Consensus        23 liVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde--~~~~~~~~~V~~--~PTf~f~k~g~~~~~~v---Ga~   94 (106)
T KOG0907|consen   23 LVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE--LEEVAKEFNVKA--MPTFVFYKGGEEVDEVV---GAN   94 (106)
T ss_pred             eEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc--CHhHHHhcCceE--eeEEEEEECCEEEEEEe---cCC
Confidence            3355454331  2244 6689999999998 9999999997  678889999874  899999874211 1221   124


Q ss_pred             HHHHHHHHHH
Q 031686          136 LSNVKSFALD  145 (155)
Q Consensus       136 ~~~I~~Fi~~  145 (155)
                      ++.+++.+..
T Consensus        95 ~~~l~~~i~~  104 (106)
T KOG0907|consen   95 KAELEKKIAK  104 (106)
T ss_pred             HHHHHHHHHh
Confidence            5566665544

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=90.15  E-value=6.1  Score=31.05  Aligned_cols=102  Identities=12%  Similarity=0.114  Sum_probs=55.1

Q ss_pred             CCCCeEecCC-CchhhhhcCCCc---eEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCC
Q 031686           39 KIPPMITYSR-ETTPLILNSPLK---LLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTC  111 (155)
Q Consensus        39 ~~P~v~e~~~-~~~~~i~~~~~~---~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~  111 (155)
                      ++--|.+++. +.+-.......+   +|+.|+..+  .... .+.|..+|++|.. +.|+-+.+..  . .+...|..  
T Consensus       123 ~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~--~-~~~~~f~~--  196 (265)
T PF02114_consen  123 RFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASK--C-PASENFPD--  196 (265)
T ss_dssp             ---SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECG--C-CTTTTS-T--
T ss_pred             cCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhc--c-CcccCCcc--
Confidence            3556677754 444444443222   344455443  2456 7889999999875 8899887764  1 24444544  


Q ss_pred             CCcceEEEEecCCC-eee-cC----CCCCCHHHHHHHHHHH
Q 031686          112 YTSRVIAVASIRKR-KKY-VL----NGELTLSNVKSFALDF  146 (155)
Q Consensus       112 ~~~P~v~i~~~~~~-~kY-~~----~~~~t~~~I~~Fi~~f  146 (155)
                      ..+|++.++....- ..+ .+    ..+++.++|+.|+..+
T Consensus       197 ~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~  237 (265)
T PF02114_consen  197 KNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY  237 (265)
T ss_dssp             TC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred             cCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence            45999999984210 123 12    1279999999999853

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=90.15  E-value=4.5  Score=27.69  Aligned_cols=85  Identities=9%  Similarity=0.031  Sum_probs=51.2

Q ss_pred             CceEEEEeecC-C--hhH-HHHHHHHHHhhcC-ce-EEEEEeCCCcchh-----------hhhhhhCCCCCCcceEEEEe
Q 031686           59 LKLLWLFAAVH-D--SEA-KSIFQETARAFKG-KL-LFVYSQIYPKLKG-----------QIFDYFGVTCYTSRVIAVAS  121 (155)
Q Consensus        59 ~~~v~lf~~~~-~--~~~-~~~~~~vA~~~~~-~i-~F~~vd~~~~~~~-----------~~~~~~gl~~~~~P~v~i~~  121 (155)
                      .+++++|++.. +  +.. .+.+.+....+.. ++ +|+.++...  ..           .+.+.|++++.. -.++++.
T Consensus        10 ~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~--~~~~~~~~~~~~~~lr~~l~~~~~~-f~~vLiG   86 (118)
T PF13778_consen   10 NRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGA--RSPGKPLSPEDIQALRKRLRIPPGG-FTVVLIG   86 (118)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcc--ccccCcCCHHHHHHHHHHhCCCCCc-eEEEEEe
Confidence            45677787654 3  233 5555553334432 34 444444432  23           667888888654 5566667


Q ss_pred             cCCCeeecCCCCCCHHHHHHHHHHH
Q 031686          122 IRKRKKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       122 ~~~~~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      .+.+.|-..++.++.+.|.+.|...
T Consensus        87 KDG~vK~r~~~p~~~~~lf~~ID~M  111 (118)
T PF13778_consen   87 KDGGVKLRWPEPIDPEELFDTIDAM  111 (118)
T ss_pred             CCCcEEEecCCCCCHHHHHHHHhCC
Confidence            6666666666778999998888653

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=90.11  E-value=2.6  Score=29.14  Aligned_cols=97  Identities=6%  Similarity=-0.029  Sum_probs=55.4

Q ss_pred             CCCchhhhhcCCCceEEEEeecC--ChhH--HHHHH--HHHHhhcCceEEEEEeCCCcchhhhhh--------hhCCCCC
Q 031686           47 SRETTPLILNSPLKLLWLFAAVH--DSEA--KSIFQ--ETARAFKGKLLFVYSQIYPKLKGQIFD--------YFGVTCY  112 (155)
Q Consensus        47 ~~~~~~~i~~~~~~~v~lf~~~~--~~~~--~~~~~--~vA~~~~~~i~F~~vd~~~~~~~~~~~--------~~gl~~~  112 (155)
                      +++.+...-+.++|+++.|...-  .=..  ...|.  ++++....+++++.+|.+.  ...+.+        .+|..  
T Consensus         4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~--~~~~~~~~~~~~~~~~~~~--   79 (124)
T cd02955           4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE--RPDVDKIYMNAAQAMTGQG--   79 (124)
T ss_pred             CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc--CcHHHHHHHHHHHHhcCCC--
Confidence            34455555666766655554321  1111  22233  4666655678999999875  222222        24554  


Q ss_pred             CcceEEEEecCCCeee-----cCCCCCCHHHHHHHHHHHH
Q 031686          113 TSRVIAVASIRKRKKY-----VLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       113 ~~P~v~i~~~~~~~kY-----~~~~~~t~~~I~~Fi~~f~  147 (155)
                      ..|++++++.+....|     +...+++...+.++++.+.
T Consensus        80 G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (124)
T cd02955          80 GWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIR  119 (124)
T ss_pred             CCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHH
Confidence            4899999998643333     2223577777888877764

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=90.01  E-value=4.8  Score=31.37  Aligned_cols=87  Identities=13%  Similarity=0.078  Sum_probs=57.8

Q ss_pred             EEEEeecC-Ch-hH-HHHHHHHHHhhcCceEEEEEeCCCc-c------hhhhhhhhCCCCCCcceEEEEecCCCeeecCC
Q 031686           62 LWLFAAVH-DS-EA-KSIFQETARAFKGKLLFVYSQIYPK-L------KGQIFDYFGVTCYTSRVIAVASIRKRKKYVLN  131 (155)
Q Consensus        62 v~lf~~~~-~~-~~-~~~~~~vA~~~~~~i~F~~vd~~~~-~------~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~  131 (155)
                      +++|+... .+ .+ .-.++..|++|.=.+..+.+|+... .      .....+.+|++  ..|++.+++..+++.+++.
T Consensus       147 L~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~--~~PAl~Lv~~~t~~~~pv~  224 (248)
T PRK13703        147 LMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVK--YFPALMLVDPKSGSVRPLS  224 (248)
T ss_pred             EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCc--ccceEEEEECCCCcEEEEe
Confidence            55555443 22 33 6678888888877788888887421 1      12244677875  4899999998766666665


Q ss_pred             -CCCCHHHHHHHHHHHHcCC
Q 031686          132 -GELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       132 -~~~t~~~I~~Fi~~f~~Gk  150 (155)
                       |-++.++|.+=|..+..|.
T Consensus       225 ~G~iS~deL~~Ri~~v~t~~  244 (248)
T PRK13703        225 YGFITQDDLAKRFLNVSTDF  244 (248)
T ss_pred             eccCCHHHHHHHHHHHHhcc
Confidence             7789988876666555553

>PTZ00062 glutaredoxin; Provisional

Probab=88.72  E-value=6.6  Score=29.65  Aligned_cols=59  Identities=10%  Similarity=0.055  Sum_probs=39.3

Q ss_pred             hhhhhcCCCce-EEEEeec--CChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686           51 TPLILNSPLKL-LWLFAAV--HDSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI  122 (155)
Q Consensus        51 ~~~i~~~~~~~-v~lf~~~--~~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~  122 (155)
                      +.++.+++... ++.|...  .+-.. ...+.++|++|. ++.|+.+|.+          +++.  ..|+++++..
T Consensus         9 ~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d----------~~V~--~vPtfv~~~~   71 (204)
T PTZ00062          9 KDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA----------DANN--EYGVFEFYQN   71 (204)
T ss_pred             HHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc----------cCcc--cceEEEEEEC
Confidence            34444433233 5455333  24566 889999999985 5999999876          5565  4899998874

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=88.54  E-value=3.7  Score=26.51  Aligned_cols=59  Identities=5%  Similarity=-0.104  Sum_probs=43.0

Q ss_pred             cCCCce-EEEEeecC-C-hhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEE
Q 031686           56 NSPLKL-LWLFAAVH-D-SEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAV  119 (155)
Q Consensus        56 ~~~~~~-v~lf~~~~-~-~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i  119 (155)
                      +-..|+ +.+|.... . =.. .+.+.++++.+ +++.|..+|.++  +....+.+|+..  .|++++
T Consensus         9 ~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~--~~e~a~~~~V~~--vPt~vi   71 (89)
T cd03026           9 RLNGPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGAL--FQDEVEERGIMS--VPAIFL   71 (89)
T ss_pred             hcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHh--CHHHHHHcCCcc--CCEEEE
Confidence            345566 77777653 2 245 67788888775 369999999886  567889999864  899975

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=88.15  E-value=3.2  Score=30.02  Aligned_cols=44  Identities=14%  Similarity=-0.084  Sum_probs=30.9

Q ss_pred             hhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          103 IFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       103 ~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +.+.||+.  ..|...+++.+..-.|...|.++.+.+.+.++.++.
T Consensus       129 ~~~~~~v~--~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       129 LGLDLGVY--GAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             hHHhcCCe--eCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence            33445553  369888888653346666678899999999998873

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=87.86  E-value=5.2  Score=25.46  Aligned_cols=64  Identities=16%  Similarity=0.125  Sum_probs=37.1

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhc-CceEEEEEeCCCc--c-------------------hhhhhhhhCCCCC
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFK-GKLLFVYSQIYPK--L-------------------KGQIFDYFGVTCY  112 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~-~~i~F~~vd~~~~--~-------------------~~~~~~~~gl~~~  112 (155)
                      +++.++.|....  .-.. ...+.++.+++. .++.++.++.+..  +                   ...+.+.||+.  
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   96 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVR--   96 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcC--
Confidence            344555555432  1233 567777777775 3466777666641  0                   13455666765  


Q ss_pred             CcceEEEEecC
Q 031686          113 TSRVIAVASIR  123 (155)
Q Consensus       113 ~~P~v~i~~~~  123 (155)
                      ..|.+.|++.+
T Consensus        97 ~~P~~~l~d~~  107 (116)
T cd02966          97 GLPTTFLIDRD  107 (116)
T ss_pred             ccceEEEECCC
Confidence            47888888764

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=87.08  E-value=4.5  Score=23.96  Aligned_cols=42  Identities=12%  Similarity=0.035  Sum_probs=31.2

Q ss_pred             HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEE
Q 031686           74 KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVA  120 (155)
Q Consensus        74 ~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~  120 (155)
                      ...+.+++..+ +++.|..+|.+.  ...+.+.+|+.  ..|++.+-
T Consensus        18 ~~~l~~l~~~~-~~i~~~~id~~~--~~~l~~~~~i~--~vPti~i~   59 (67)
T cd02973          18 VQAANRIAALN-PNISAEMIDAAE--FPDLADEYGVM--SVPAIVIN   59 (67)
T ss_pred             HHHHHHHHHhC-CceEEEEEEccc--CHhHHHHcCCc--ccCEEEEC
Confidence            56677777653 468999999885  46778889985  38998763

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=86.93  E-value=3.2  Score=30.43  Aligned_cols=43  Identities=14%  Similarity=0.009  Sum_probs=30.6

Q ss_pred             hhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCC
Q 031686          106 YFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       106 ~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      .||+.  ..|...+++.+..-.|...|+++.+.+++.++..+...
T Consensus       137 ~~gv~--~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~  179 (185)
T PRK15412        137 DLGVY--GAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKY  179 (185)
T ss_pred             hcCCC--cCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence            34443  37988888865333566667889999999999887653

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=84.26  E-value=9.8  Score=25.25  Aligned_cols=38  Identities=18%  Similarity=0.253  Sum_probs=27.6

Q ss_pred             hhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHH
Q 031686          101 GQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKS  141 (155)
Q Consensus       101 ~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~  141 (155)
                      ..+.+.|++..  .|++.+++... ..|...|-.+++.|.+
T Consensus        83 ~~~~~~~~i~~--~P~~~vid~~g-i~~~~~g~~~~~~~~~  120 (123)
T cd03011          83 GVISARWGVSV--TPAIVIVDPGG-IVFVTTGVTSEWGLRL  120 (123)
T ss_pred             cHHHHhCCCCc--ccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence            35677888864  89999999753 5666667778887753

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=82.64  E-value=9.1  Score=25.91  Aligned_cols=76  Identities=17%  Similarity=0.175  Sum_probs=49.6

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecC----ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVH----DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI  117 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~----~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v  117 (155)
                      ..+++.+++......+...+++|....    +... .-.+=|+.+.+.+.+...++..+.  ...+...||+..  .|++
T Consensus        11 ~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~--e~~L~~r~gv~~--~PaL   86 (107)
T PF07449_consen   11 WPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAA--ERALAARFGVRR--WPAL   86 (107)
T ss_dssp             EEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHH--HHHHHHHHT-TS--SSEE
T ss_pred             CeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchh--HHHHHHHhCCcc--CCeE
Confidence            345567778887777544455554432    2223 446678899999988888887443  457778999864  8999


Q ss_pred             EEEec
Q 031686          118 AVASI  122 (155)
Q Consensus       118 ~i~~~  122 (155)
                      ++...
T Consensus        87 vf~R~   91 (107)
T PF07449_consen   87 VFFRD   91 (107)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            98873

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=82.23  E-value=8.5  Score=26.07  Aligned_cols=71  Identities=15%  Similarity=0.021  Sum_probs=37.4

Q ss_pred             hhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecC
Q 031686           52 PLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIR  123 (155)
Q Consensus        52 ~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~  123 (155)
                      +.....++|+++.|...-  .-.. ...+.+.+........|+.++.+.. .....+.+++.+..+|++++++.+
T Consensus        13 ~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~-~~~~~~~~~~~g~~vPt~~f~~~~   86 (117)
T cd02959          13 KEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDD-EEPKDEEFSPDGGYIPRILFLDPS   86 (117)
T ss_pred             HHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCC-CCchhhhcccCCCccceEEEECCC
Confidence            333445566666565431  1123 3445555443333334555555532 123345677765459999999864

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=81.71  E-value=11  Score=23.86  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=11.4

Q ss_pred             HHHHHHHHHhhc--CceEEEEEeCC
Q 031686           74 KSIFQETARAFK--GKLLFVYSQIY   96 (155)
Q Consensus        74 ~~~~~~vA~~~~--~~i~F~~vd~~   96 (155)
                      ...+.++.++++  +++.|+.+..+
T Consensus        20 ~~~l~~l~~~~~~~~~v~~v~Vs~d   44 (95)
T PF13905_consen   20 LPKLKELYKKYKKKDDVEFVFVSLD   44 (95)
T ss_dssp             HHHHHHHHHHHTTTTTEEEEEEE-S
T ss_pred             HHHHHHHHHHhCCCCCEEEEEEEeC
Confidence            445555555555  44555544444

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	155
2k18_A	228	Solution Structure Of Bb' Domains Of Human Protein		6e-08
3uem_A	361	Crystal Structure Of Human Pdi Bb'a' Domains Length		6e-08
3bj5_A	147	Alternative Conformations Of The X Region Of Human		8e-06

>pdb|2K18|A Chain A, Solution Structure Of Bb' Domains Of Human Protein Disulfide Isomerase Length = 228

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 8/127 (6%)
Query: 33  DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
           DFI  N++P +I ++ +T P I    +K   LL+L  +V D + K S F+  A +FKGK+
Sbjct: 98  DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKI 157
Query: 89  LFVYSQIYPKLKGQIFDYFGV---TCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD 145
           LF++         +I ++FG+    C   R+I +     + K   + ELT   +  F   
Sbjct: 158 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPE-SEELTAERITEFCHR 216
Query: 146 FLGDKLR 152
           FL  K++
Sbjct: 217 FLEGKIK 223

>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains Length = 361

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 8/127 (6%)
Query: 33  DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
           DFI  N++P +I ++ +T P I    +K   LL+L  +V D + K S F+  A +FKGK+
Sbjct: 109 DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKI 168
Query: 89  LFVYSQIYPKLKGQIFDYFGV---TCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD 145
           LF++         +I ++FG+    C   R+I +     + K   + ELT   +  F   
Sbjct: 169 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYK-PESEELTAERITEFCHR 227
Query: 146 FLGDKLR 152
           FL  K++
Sbjct: 228 FLEGKIK 234

>pdb|3BJ5|A Chain A, Alternative Conformations Of The X Region Of Human Protein Disulphide- Isomerase Modulate Exposure Of The Substrate Binding B' Domain Length = 147

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 38  NKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKLLFVYS 93
           N++P +I ++ +T P I    +K   LL+L  +V D + K S F+  A +FKGK+LF + 
Sbjct: 11  NQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFI 70
Query: 94  QIYPKLKGQIFDYFGV---TCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDK 150
                   +I ++FG+    C   R+I +     + K   + ELT   +  F   FL  K
Sbjct: 71  DSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPE-SEELTAERITEFCHRFLEGK 129
Query: 151 LR 152
           ++
Sbjct: 130 IK 131

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	9e-15
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	1e-14
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	1e-14
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	1e-12
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	3e-12
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	9e-10
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	4e-09
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	4e-05

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens} Length = 147

 Score = 66.2 bits (161), Expect = 9e-15
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 31  IDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEA----KSIFQETARAFKG 86
               +  N++P +I ++ +T P I    +K   L              S F+  A +FKG
Sbjct: 4   HHHHMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG 63

Query: 87  KLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVL--NGELTLSNVKSFAL 144
           K+LF +         +I ++FG+       + + ++ +        + ELT   +  F  
Sbjct: 64  KILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCH 123

Query: 145 DFLGDKL 151
            FL  K+
Sbjct: 124 RFLEGKI 130

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 68.9 bits (168), Expect = 1e-14
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 7/138 (5%)

Query: 19  FIFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEA----K 74
            ++        V  ++I    +P +   + E    +    L  L LF    D+E+    +
Sbjct: 197 MVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQ 256

Query: 75  SIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKY-VLNGE 133
           +       + KG + F+++            +   T     VIA+ S R    +      
Sbjct: 257 NEVARQLISEKGTINFLHAD--CDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDV 314

Query: 134 LTLSNVKSFALDFLGDKL 151
           L    +K F  D    KL
Sbjct: 315 LIPGKLKQFVFDLHSGKL 332

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A Length = 133

 Score = 65.6 bits (160), Expect = 1e-14
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 40  IPPMITYSRETTPLILNSPLKLLWLFAAVHDS--EAKSIFQETARAFKGKLLFVYSQIYP 97
            P +     ET    +++ + L ++FA   +   E     +  A A +G + F    I  
Sbjct: 5   SPLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGT--IDA 62

Query: 98  KLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVL--NGELTLSNVKSFALDFLGDKL 151
           K  G       +        A+  + K +K+      E+T   +K+F  DF+  K+
Sbjct: 63  KAFGAHAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKI 118

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 63.2 bits (153), Expect = 1e-12
 Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 13/146 (8%)

Query: 19  FIFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDS-----EA 73
               D  +T   + +F+  ++ P +     E         L  + + A    S     E 
Sbjct: 204 IAIPDKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEF 263

Query: 74  KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTS------RVIAVASIRKRKK 127
             I ++ AR            I P     +  Y+  T           V+ V        
Sbjct: 264 LEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVNVTDADSVWM 323

Query: 128 YVLN--GELTLSNVKSFALDFLGDKL 151
            + +     T   ++ +  D L  K+
Sbjct: 324 EIPDDDDLPTAEELEDWIEDVLSGKI 349

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 61.9 bits (150), Expect = 3e-12
 Identities = 16/145 (11%), Positives = 40/145 (27%), Gaps = 13/145 (8%)

Query: 20  IFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDS-----EAK 74
              D   +   I +F+  ++   +     E+        +  + + A   ++     E  
Sbjct: 207 TIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFL 266

Query: 75  SIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTS------RVIAVASIRKRKKY 128
            I +  A+            I P     +  Y+  T           V+ V         
Sbjct: 267 EILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWME 326

Query: 129 V--LNGELTLSNVKSFALDFLGDKL 151
           +       +   ++ +  D L  ++
Sbjct: 327 MDDEEDLPSAEELEDWLEDVLEGEI 351

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 54.7 bits (131), Expect = 9e-10
 Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 6/136 (4%)

Query: 23  DVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLF----AAVHDSEAKSIFQ 78
           +   T   + DFI  N++P +I ++ +T P I    +K   L     +        S F+
Sbjct: 99  EGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFK 158

Query: 79  ETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVL--NGELTL 136
             A +FKGK+LF++         +I ++FG+       + + ++ +        + ELT 
Sbjct: 159 TAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTA 218

Query: 137 SNVKSFALDFLGDKLR 152
             +  F   FL  K++
Sbjct: 219 ERITEFCHRFLEGKIK 234

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens} Length = 252

 Score = 52.8 bits (126), Expect = 4e-09
 Identities = 22/142 (15%), Positives = 43/142 (30%), Gaps = 9/142 (6%)

Query: 19  FIFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDS-----EA 73
             +++   T   I  FI  N        + +   LI    L + +       +       
Sbjct: 92  VAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGKDLLIAYYDVDYEKNAKGSNYW 151

Query: 74  KSIFQETARAFKG-KLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI-RKRKKYVLN 131
           ++     A+ F        ++    K        FG+      +  VA    K +K+V+ 
Sbjct: 152 RNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQ 211

Query: 132 GE--LTLSNVKSFALDFLGDKL 151
            E       ++ F  D+    L
Sbjct: 212 EEFSRDGKALERFLQDYFDGNL 233

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus} Length = 250

 Score = 51.3 bits (122), Expect = 1e-08
 Identities = 20/135 (14%), Positives = 43/135 (31%), Gaps = 11/135 (8%)

Query: 25  SFTISVIDDFISLNKIPPMITYSRETTPLILNS-PLKLLWLFAAVHDSEA------KSIF 77
           S   S I D++  + +P +            +  PL +++                ++  
Sbjct: 100 STEASAIKDYVVKHALPLVGHRKTSNDAKRYSKRPLVVVYYSVDFSFDYRTATQFWRNKV 159

Query: 78  QETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNG-ELTL 136
            E A+ F     + ++    +         G++     V A       KK+ +   E   
Sbjct: 160 LEVAKDFPE---YTFAIADEEDYATEVKDLGLSESGGDVNAAILDESGKKFAMEPEEFDS 216

Query: 137 SNVKSFALDFLGDKL 151
             ++ F + F   KL
Sbjct: 217 DALREFVMAFKKGKL 231

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 26/156 (16%), Positives = 47/156 (30%), Gaps = 29/156 (18%)

Query: 27  TISVIDDFISLNKIPPMI---TYSRETTPLILNSPLKLLWL-----FAAVHDSEAKSIFQ 78
            + V   +    K+   I         +P  +   L+ L       + +  D  + +I  
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-SSNIKL 225

Query: 79  ETARAFKGKLLFVYSQIYPK-L-------KGQIFDYFGVTC---YTSR---VIAVASIRK 124
                       + S+ Y   L         + ++ F ++C    T+R   V    S   
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 125 RKKYVLNGE---LTLSNVKSFALDFLG---DKLRNQ 154
                L+     LT   VKS  L +L      L  +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 41.4 bits (96), Expect = 4e-05
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 18/141 (12%)

Query: 25  SFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDS--EAKSIFQETAR 82
                V + ++ +  +P             + S L L +LF    +   E K +F E A+
Sbjct: 205 IADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAK 264

Query: 83  AFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLN----------- 131
             +G + FV   I  +  G+      +      + A+  + +  KY L            
Sbjct: 265 KNRGLMNFVS--IDARKFGRHAGNLNMK-EQFPLFAIHDMTEDLKYGLPQLSEEAFDELS 321

Query: 132 --GELTLSNVKSFALDFLGDK 150
               L    ++S   DFL   
Sbjct: 322 DKIVLESKAIESLVKDFLKGD 342

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	99.93
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.92
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.91
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.91
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.85
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.83
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.83
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.81
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.81
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.79
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.76
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.28
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	98.96
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	98.88
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.84
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	98.83
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.74
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	98.73
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	98.63
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	98.62
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	98.61
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	98.6
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	98.59
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	98.59
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	98.58
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	98.57
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	98.56
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	98.56
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	98.55
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	98.55
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	98.55
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	98.53
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	98.53
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	98.52
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	98.5
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	98.49
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	98.47
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	98.47
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	98.46
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	98.46
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	98.46
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	98.44
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	98.43
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	98.42
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	98.4
2l57_A	126	Uncharacterized protein; structural genomics, unkn	98.39
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	98.39
1mek_A	120	Protein disulfide isomerase; electron transport, r	98.38
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.38
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	98.33
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	98.33
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	98.33
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	98.3
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	98.29
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	98.29
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	98.28
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.27
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	98.27
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	98.25
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.24
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	98.23
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	98.22
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	98.22
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.21
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	98.2
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.19
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	98.19
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	98.18
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.18
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	98.17
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	98.15
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.14
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	98.11
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	98.1
2qsi_A	137	Putative hydrogenase expression/formation protein;	98.09
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	98.08
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	98.07
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	98.07
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	98.06
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	98.03
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	98.02
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.0
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	97.96
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	97.94
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	97.94
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	97.94
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	97.93
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	97.92
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	97.92
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	97.92
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	97.91
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	97.91
2kuc_A	130	Putative disulphide-isomerase; structural genomics	97.89
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	97.09
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	97.85
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	97.79
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	97.76
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	97.71
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	97.7
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	97.67
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	97.66
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	97.66
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	97.64
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	97.62
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	97.61
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	97.6
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	97.58
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	97.58
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	97.52
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	97.52
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	97.51
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	97.51
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	97.5
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	97.38
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	97.38
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	97.37
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	97.35
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	97.33
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	97.32
3raz_A	151	Thioredoxin-related protein; structural genomics,	97.32
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	97.29
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	97.21
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	97.16
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	96.18
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	97.1
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	97.05
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	97.04
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	97.0
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	96.97
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	96.92
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	96.87
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	96.86
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	96.86
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	96.86
4evm_A	138	Thioredoxin family protein; structural genomics, n	96.78
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	96.77
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	96.69
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	96.69
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	96.66
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	96.6
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	96.51
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	96.3
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	96.3
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	96.26
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	96.24
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	96.22
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	96.17
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	96.16
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	96.1
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	96.02
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	95.93
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	95.82
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	95.72
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	95.68
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	95.52
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	95.37
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	95.36
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	95.3
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	95.18
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	95.15
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	94.81
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	94.7
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	94.0
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	93.96
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	93.57
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	93.52
2lrt_A	152	Uncharacterized protein; structural genomics, thio	93.31
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	92.93
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	92.03
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	91.63
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	91.39
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	91.3
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	91.25
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	91.15
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	91.04
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	90.83
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	90.67
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	90.54
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	90.32
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	89.96
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	89.81
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	89.42
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	88.71
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	88.6
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	88.54
1ttz_A	87	Conserved hypothetical protein; structural genomic	87.76
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	87.57
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	87.32
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	87.24
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	85.88
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	85.68
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	85.69
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	85.31
3ira_A	173	Conserved protein; methanosarcina mazei,structural	84.54
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	83.82
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	83.63
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	81.88
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	80.6
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	80.41

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=99.93  E-value=1.4e-25  Score=160.04  Aligned_cols=121  Identities=26%  Similarity=0.479  Sum_probs=98.8

Q ss_pred             HHHhCCCCCeEecCCCchhhhhcCCCceEEE-EeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCC
Q 031686           34 FISLNKIPPMITYSRETTPLILNSPLKLLWL-FAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGV  109 (155)
Q Consensus        34 fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~l-f~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl  109 (155)
                      -++.+++|+|+++|.+|+.+|++++.+.+++ |...+  +.+. ++.++++|++|+++++|+++|++...+.+.+++||+
T Consensus         7 ~~~~~~~PLV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~~~~l~~fGl   86 (147)
T 3bj5_A            7 HMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGL   86 (147)
T ss_dssp             --------CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGGHHHHHHTTC
T ss_pred             chhhccCCeeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhHHHHHHHcCC
Confidence            4678999999999999999999999998544 55433  3567 899999999999999999999954347789999999


Q ss_pred             CCCCcceEEEEec-CCCeeecCC-CCCCHHHHHHHHHHHHcCCCccC
Q 031686          110 TCYTSRVIAVASI-RKRKKYVLN-GELTLSNVKSFALDFLGDKLRNQ  154 (155)
Q Consensus       110 ~~~~~P~v~i~~~-~~~~kY~~~-~~~t~~~I~~Fi~~f~~Gkl~p~  154 (155)
                      +++++|+++|++. ..++||.++ +++|.++|++|+++|++|||+||
T Consensus        87 ~~~~~P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~GkL~p~  133 (147)
T 3bj5_A           87 KKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPH  133 (147)
T ss_dssp             CGGGCSEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTTCSCEE
T ss_pred             CcccCCEEEEEecccccccCCCCcccCCHHHHHHHHHHHHcCCcccc
Confidence            9888999999987 556799886 68999999999999999999997

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.92  E-value=3.7e-24  Score=161.76  Aligned_cols=131  Identities=22%  Similarity=0.355  Sum_probs=114.7

Q ss_pred             EeccC----CcCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCce-EEEEeecC--ChhH-HHHHHHHHHhhcCceEEE
Q 031686           20 IFSDV----SFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKL-LWLFAAVH--DSEA-KSIFQETARAFKGKLLFV   91 (155)
Q Consensus        20 ~~y~g----~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~-v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~   91 (155)
                      ..|+|    +++.++|.+||+.+++|+|+++|++|+..+++.+.|. +++|.+..  +.+. .+.++++|+++++++.|+
T Consensus        88 ~~~~~~~~g~~~~~~l~~fi~~~~~plv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~  167 (227)
T 4f9z_D           88 LNLEDEDIESIDATKLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFI  167 (227)
T ss_dssp             EEECHHHHHTCCHHHHHHHHHHHCCCSEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEE
T ss_pred             ccccccccCCCCHHHHHHHHHHhCCCceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEE
Confidence            56774    7999999999999999999999999999999999888 45565643  4566 899999999999999999


Q ss_pred             EEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCC-CCCCHHHHHHHHHHHHcCC
Q 031686           92 YSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLN-GELTLSNVKSFALDFLGDK  150 (155)
Q Consensus        92 ~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~-~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      |+|++...+.+++++||+++.++|+++|++...+.+|.++ +++|.++|.+|+++|++||
T Consensus       168 ~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~Gk  227 (227)
T 4f9z_D          168 LVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLSGK  227 (227)
T ss_dssp             EEETTSGGGHHHHHHTTCCGGGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHHHTTC
T ss_pred             EeCCccHhHHHHHHHcCCCcccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHHhCCC
Confidence            9999854477899999998778999999998766678776 6899999999999999997

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.91  E-value=1.2e-23  Score=161.20  Aligned_cols=130  Identities=16%  Similarity=0.219  Sum_probs=110.5

Q ss_pred             Eecc--CCcCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCceEEEEeecC-------ChhH-HHHHHHHHHhhcCceE
Q 031686           20 IFSD--VSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVH-------DSEA-KSIFQETARAFKGKLL   89 (155)
Q Consensus        20 ~~y~--g~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~-------~~~~-~~~~~~vA~~~~~~i~   89 (155)
                      ..|+  |+++.++|.+||+.+++|+|+++|.+|+..++. +.|++++|...+       +.+. ++.++++|++|| +++
T Consensus        93 ~~y~g~~~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~~~-~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~k-ki~  170 (250)
T 3ec3_A           93 HVMDVQGSTEASAIKDYVVKHALPLVGHRKTSNDAKRYS-KRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFP-EYT  170 (250)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHSSCTEEEECTTTHHHHSC-SSSEEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCT-TSE
T ss_pred             eeccCCCCCCHHHHHHHHHHcCCCceeecCccchhhhhc-cCccEEEEEecccccccchhHHHHHHHHHHHHHhhc-cee
Confidence            4677  579999999999999999999999999999985 678876776421       2355 789999999999 999


Q ss_pred             EEEEeCCCcchhhhhhhhCCCCCCc-ceEEEEecCCCeeecCC-CCCCHHHHHHHHHHHHcCCCccC
Q 031686           90 FVYSQIYPKLKGQIFDYFGVTCYTS-RVIAVASIRKRKKYVLN-GELTLSNVKSFALDFLGDKLRNQ  154 (155)
Q Consensus        90 F~~vd~~~~~~~~~~~~~gl~~~~~-P~v~i~~~~~~~kY~~~-~~~t~~~I~~Fi~~f~~Gkl~p~  154 (155)
                      |+|+|++.  +.+.+++||+++... |.+++++ ..+.||.++ +++|.++|.+|+++|++||++|+
T Consensus       171 F~~~d~~~--~~~~l~~fgl~~~~~~p~~~~~~-~~~~ky~~~~~~~t~~~i~~Fv~~~~~Gkl~p~  234 (250)
T 3ec3_A          171 FAIADEED--YATEVKDLGLSESGGDVNAAILD-ESGKKFAMEPEEFDSDALREFVMAFKKGKLKPV  234 (250)
T ss_dssp             EEEEETTT--THHHHHHTTCSSCSCSCEEEEEC-TTSCEEECCCCSCCHHHHHHHHHHHHTTCCCCC
T ss_pred             EEEEcHHH--HHHHHHHcCCCccCCCcEEEEEc-CCCceecCCcccCCHHHHHHHHHHHHCCCccce
Confidence            99999986  678899999986544 5787777 446799987 68999999999999999999997

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.91  E-value=6.4e-24  Score=162.79  Aligned_cols=131  Identities=21%  Similarity=0.283  Sum_probs=111.8

Q ss_pred             EEec-cCCcCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCceEEEEeec--CC----hhH-HHHHHHHHHhhcCc---
Q 031686           19 FIFS-DVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAV--HD----SEA-KSIFQETARAFKGK---   87 (155)
Q Consensus        19 ~~~y-~g~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~--~~----~~~-~~~~~~vA~~~~~~---   87 (155)
                      .+.| +|+++.++|.+||..+++|+|+++|.+|+..+++.  |++++|+..  ..    .+. ++.++++|++++++   
T Consensus        91 ~~~y~~g~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~  168 (252)
T 2h8l_A           91 TVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGK--DLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHK  168 (252)
T ss_dssp             EEECCCSSCCHHHHHHHHHHHSSCSSCEECTTTHHHHSSS--SEEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccccCCCCcCHHHHHHHHHhcccCCeeecccccHhhhcCC--CeEEEEeecchhhcchhHHHHHHHHHHHHHHccccCce
Confidence            4678 99999999999999999999999999999998655  454455432  21    335 78899999999987   


Q ss_pred             eEEEEEeCCCcchhhhhhhhCC--CCCCcceEEEEecCCCeeecCCCCCCHHH--HHHHHHHHHcCCCccC
Q 031686           88 LLFVYSQIYPKLKGQIFDYFGV--TCYTSRVIAVASIRKRKKYVLNGELTLSN--VKSFALDFLGDKLRNQ  154 (155)
Q Consensus        88 i~F~~vd~~~~~~~~~~~~~gl--~~~~~P~v~i~~~~~~~kY~~~~~~t~~~--I~~Fi~~f~~Gkl~p~  154 (155)
                      +.|+|+|++.  +.+++++||+  +..++|+++|++. .+.+|.+++++|.++  |.+|+++|++|+++|+
T Consensus       169 ~~F~~~d~~~--~~~~~~~fgl~~~~~~~P~v~i~~~-~~~ky~~~~~~t~~~~~i~~F~~~~~~Gkl~~~  236 (252)
T 2h8l_A          169 LNFAVASRKT--FSHELSDFGLESTAGEIPVVAIRTA-KGEKFVMQEEFSRDGKALERFLQDYFDGNLKRY  236 (252)
T ss_dssp             CEEEEEETTT--THHHHGGGTCCCCSCSSCEEEEECT-TSCEEECCSCCCTTSHHHHHHHHHHHHTCSCCC
T ss_pred             EEEEEEchHH--HHHHHHHcCCCCccCCCCEEEEEeC-cCcEecCCcccCcchHHHHHHHHHHHCCCcccc
Confidence            9999999986  6789999999  5578999999986 467998888899998  9999999999999997

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.85  E-value=1.7e-20  Score=150.89  Aligned_cols=132  Identities=11%  Similarity=0.097  Sum_probs=110.5

Q ss_pred             EeccCC-cCHHHHHHHHHhCCCCCeEecCCCchhhhhcCC--CceEEEEeecCC--hhH-HHHHHHHHHhhcC--ceEEE
Q 031686           20 IFSDVS-FTISVIDDFISLNKIPPMITYSRETTPLILNSP--LKLLWLFAAVHD--SEA-KSIFQETARAFKG--KLLFV   91 (155)
Q Consensus        20 ~~y~g~-~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~--~~~v~lf~~~~~--~~~-~~~~~~vA~~~~~--~i~F~   91 (155)
                      ..|+|. ++.++|.+||..+++|+|+++|++|+.+++.++  .+.+++|++.++  .+. .+.|+++|++|++  ++.|+
T Consensus       206 ~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~  285 (367)
T 3us3_A          206 VTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSII  285 (367)
T ss_dssp             EECSSSSCCHHHHHHHHHHTCSCSEEECCGGGHHHHHHSCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHTTTCTTCCEE
T ss_pred             eecCCCCCCHHHHHHHHHHcCccceeecChhhHHHHHhhccCCcEEEEEEcCCChhHHHHHHHHHHHHHHcCCCCceEEE
Confidence            578884 899999999999999999999999998888864  245777887543  456 8889999999998  79999


Q ss_pred             EEeCCCcchhhhhh----hhCCCCCCcceEEEEecCCC--eeecCCC---CCCHHHHHHHHHHHHcCCCccC
Q 031686           92 YSQIYPKLKGQIFD----YFGVTCYTSRVIAVASIRKR--KKYVLNG---ELTLSNVKSFALDFLGDKLRNQ  154 (155)
Q Consensus        92 ~vd~~~~~~~~~~~----~~gl~~~~~P~v~i~~~~~~--~kY~~~~---~~t~~~I~~Fi~~f~~Gkl~p~  154 (155)
                      |+|.+.  +.+.++    .||++ .++|+++|++..++  ++|.+++   ++|.++|.+|+++|++||++|.
T Consensus       286 ~id~~~--~~~~l~~~~~~fgl~-~~~P~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~~~~~~Gkl~p~  354 (367)
T 3us3_A          286 WIDPDD--FPLLVPYWEKTFDID-LSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLEGEINTE  354 (367)
T ss_dssp             EECGGG--CTTTHHHHHHHHTCC-TTSCEEEEEETTTCCEEECCCCTTSCCCCHHHHHHHHHHHHHTSSCC-
T ss_pred             EECCcc--chhHHHHHHHhcCCC-CCCCeEEEEecccccceeecCCcccccCCHHHHHHHHHHHHcCCcCcc
Confidence            999996  555554    59998 46999999998655  4777764   6999999999999999999985

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.83  E-value=1.6e-19  Score=143.99  Aligned_cols=135  Identities=26%  Similarity=0.455  Sum_probs=117.2

Q ss_pred             EeccCCcCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCce-EEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeC
Q 031686           20 IFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKL-LWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQI   95 (155)
Q Consensus        20 ~~y~g~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~-v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~   95 (155)
                      ..|+|+++.++|.+||+.+..|+|.+++++++.+++..+.+. +++|+...  +... ...++++|+++++++.|+++|.
T Consensus        96 ~~~~g~~~~~~i~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~  175 (361)
T 3uem_A           96 NNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDS  175 (361)
T ss_dssp             EECCSCCCHHHHHHHHHHHSSCSEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECT
T ss_pred             cccCCcCCHHHHHHHHHHcCCCcceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecC
Confidence            467899999999999999999999999999999999988776 66777653  4567 8899999999999999999999


Q ss_pred             CCcchhhhhhhhCCCCCCcceEEEEec-CCCeeecCC-CCCCHHHHHHHHHHHHcCCCccC
Q 031686           96 YPKLKGQIFDYFGVTCYTSRVIAVASI-RKRKKYVLN-GELTLSNVKSFALDFLGDKLRNQ  154 (155)
Q Consensus        96 ~~~~~~~~~~~~gl~~~~~P~v~i~~~-~~~~kY~~~-~~~t~~~I~~Fi~~f~~Gkl~p~  154 (155)
                      +...+.+++++||++..++|++++++. ....+|.++ +.++.++|.+|++++++|+++|+
T Consensus       176 ~~~~~~~~~~~fgi~~~~~P~~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~  236 (361)
T 3uem_A          176 DHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPH  236 (361)
T ss_dssp             TSGGGHHHHHHTTCCTTTCSEEEEEECC--CCEECCSSCCCCHHHHHHHHHHHHTTCSCCC
T ss_pred             ChHHHHHHHHHcCCCccCCccEEEEEcCCcccccCCCccccCHHHHHHHHHHHhcCCCccc
Confidence            843378999999999778999999987 334688876 58999999999999999999885

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.83  E-value=5.6e-20  Score=128.12  Aligned_cols=116  Identities=18%  Similarity=0.264  Sum_probs=101.5

Q ss_pred             CCCCCeEecCCCchhhhhcCCCceEEEEeec-CChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcc
Q 031686           38 NKIPPMITYSRETTPLILNSPLKLLWLFAAV-HDSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSR  115 (155)
Q Consensus        38 ~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~-~~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P  115 (155)
                      .++|+|.++|.+|+.++++++.|+++.|... ..... ...|.++|++|++++.|+++|.+.  +.++++.||+..+++|
T Consensus         3 c~~plv~~~t~~~f~~~~~~~~pv~v~f~a~~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~--~~~~a~~~gi~~~~iP   80 (133)
T 2djk_A            3 LGSPLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKA--FGAHAGNLNLKTDKFP   80 (133)
T ss_dssp             CSCCCSEECCHHHHHHHHHTTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTT--TGGGTTTTTCCSSSSS
T ss_pred             cccCceeccChHHHHHHhcCCCCEEEEEecChhhHHHHHHHHHHHHHHhCCeEEEEEEchHH--hHHHHHHcCCCcccCC
Confidence            5789999999999999998888888777755 33455 789999999999999999999996  6789999999987899


Q ss_pred             eEEEEecCCCeeecCC--CCCCHHHHHHHHHHHHcCCCccCC
Q 031686          116 VIAVASIRKRKKYVLN--GELTLSNVKSFALDFLGDKLRNQK  155 (155)
Q Consensus       116 ~v~i~~~~~~~kY~~~--~~~t~~~I~~Fi~~f~~Gkl~p~~  155 (155)
                      ++++++..++++|.+.  |.++.++|++|++++++|+|+||.
T Consensus        81 tl~i~~~~~g~~~~~~~~g~~~~~~l~~fi~~~l~Gkl~p~~  122 (133)
T 2djk_A           81 AFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPSI  122 (133)
T ss_dssp             EEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCCCCSS
T ss_pred             EEEEEecCcCcccCCCCccccCHHHHHHHHHHHHcCCcCccc
Confidence            9999986446788875  889999999999999999999983

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.81  E-value=1.1e-19  Score=146.69  Aligned_cols=131  Identities=21%  Similarity=0.217  Sum_probs=111.4

Q ss_pred             EeccCCc-CHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCceEEEEeecCC---hhH-HHHHHHHHHhhcCceEEEEEe
Q 031686           20 IFSDVSF-TISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHD---SEA-KSIFQETARAFKGKLLFVYSQ   94 (155)
Q Consensus        20 ~~y~g~~-~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~~---~~~-~~~~~~vA~~~~~~i~F~~vd   94 (155)
                      ..|+|++ +.++|.+||..+++|+|.++|.+|+..++..+.+++++|+..++   .+. .+.+.++|.++++++.|+|+|
T Consensus       197 ~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~id  276 (382)
T 2r2j_A          197 MVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHAD  276 (382)
T ss_dssp             EECCSCTTCHHHHHHHHHHHHSCSSEECCHHHHHHHHTTCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTTTSEEEEEE
T ss_pred             cccCCCCCCHHHHHHHHHhcccCceEecChhhHHHHhcCCCcEEEEEecCCchHHHHHHHHHHHHHHHHhCCeeEEEEEc
Confidence            5688988 89999999999999999999999999999999888888887643   233 566677788899999999999


Q ss_pred             CCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCC---CCCCHHHHHHHHHHHHcCCCccC
Q 031686           95 IYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLN---GELTLSNVKSFALDFLGDKLRNQ  154 (155)
Q Consensus        95 ~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~---~~~t~~~I~~Fi~~f~~Gkl~p~  154 (155)
                      ++.  +.+.+++||+++.++|+++|.+..  ..|.++   +.+++++|.+|+++|++|+|+|+
T Consensus       277 ~~~--~~~~~~~~gl~~~~~P~i~i~~~~--~~y~~~~~~~~~~~~~i~~F~~d~~~Gkl~p~  335 (382)
T 2r2j_A          277 CDK--FRHPLLHIQKTPADCPVIAIDSFR--HMYVFGDFKDVLIPGKLKQFVFDLHSGKLHRE  335 (382)
T ss_dssp             TTT--THHHHHHTTCCGGGCSEEEEECSS--CEEECCCSGGGGSTTHHHHHHHHHHHTTTSSC
T ss_pred             hHH--hHHHHHHcCCCccCCCEEEEEcch--hcCCCCccccccCHHHHHHHHHHHHCCCcccc
Confidence            996  778899999998789999998753  335543   35688999999999999999997

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.81  E-value=6.8e-19  Score=140.37  Aligned_cols=130  Identities=16%  Similarity=0.177  Sum_probs=108.3

Q ss_pred             EeccCC-cCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCC-ce-EEEEeecCC--hhH-HHHHHHHHHhhcC--ceEEE
Q 031686           20 IFSDVS-FTISVIDDFISLNKIPPMITYSRETTPLILNSPL-KL-LWLFAAVHD--SEA-KSIFQETARAFKG--KLLFV   91 (155)
Q Consensus        20 ~~y~g~-~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~-~~-v~lf~~~~~--~~~-~~~~~~vA~~~~~--~i~F~   91 (155)
                      ..|+|+ ++.++|.+||..++.|+|+++|.+|+..+++++. +. +++|.+..+  ... .+.++++|+++++  ++.|+
T Consensus       204 ~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~  283 (350)
T 1sji_A          204 IAIPDKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIV  283 (350)
T ss_dssp             EECSSSSCCHHHHHHHHHHHCCCSEEECCTTTHHHHHHSCSSSEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCEE
T ss_pred             eecCCCCCCHHHHHHHHHHcCccchhhcChhhHHHHhcCCCCCcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEEE
Confidence            578887 8999999999999999999999999999998865 55 555655433  356 8899999999987  89999


Q ss_pred             EEeCCCcchhhhh----hhhCCCCCCcceEEEEecCCCeeec--CC---CCCCHHHHHHHHHHHHcCCCc
Q 031686           92 YSQIYPKLKGQIF----DYFGVTCYTSRVIAVASIRKRKKYV--LN---GELTLSNVKSFALDFLGDKLR  152 (155)
Q Consensus        92 ~vd~~~~~~~~~~----~~~gl~~~~~P~v~i~~~~~~~kY~--~~---~~~t~~~I~~Fi~~f~~Gkl~  152 (155)
                      |+|.+.  +.+.+    +.||++ .+.|+++|++.+++.+|.  ++   +++|.++|.+|++++++|+|+
T Consensus       284 ~id~~~--~~~~~~~~~~~~gi~-~~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d~~~Gkl~  350 (350)
T 1sji_A          284 WIDPDD--FPLLVAYWEKTFKID-LFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLSGKIN  350 (350)
T ss_dssp             EECGGG--CHHHHHHHHHHCCSC-TTSCEEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHHHHTSCC-
T ss_pred             EECchh--hHHHHHHHHhhcCCC-ccCCcEEEEecccccccccCCCcccccCCHHHHHHHHHHHhcCccC
Confidence            999986  56777    789998 468999999986555665  44   379999999999999999985

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.79  E-value=1.1e-18  Score=143.95  Aligned_cols=130  Identities=20%  Similarity=0.273  Sum_probs=109.9

Q ss_pred             Eecc-CCcCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCceEEEEeecC--C----hhH-HHHHHHHHHhhcCc---e
Q 031686           20 IFSD-VSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVH--D----SEA-KSIFQETARAFKGK---L   88 (155)
Q Consensus        20 ~~y~-g~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~----~~~-~~~~~~vA~~~~~~---i   88 (155)
                      ..|+ |.++.++|.+||+.+++|+|+++|.+|+..+++.+  .+++|...+  .    .+. ++.++++|++++++   +
T Consensus       196 ~~y~~~~~~~~~l~~fi~~~~~p~v~e~t~~n~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~i  273 (481)
T 3f8u_A          196 VAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGKD--LLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKL  273 (481)
T ss_dssp             EECCCSSCCHHHHHHHHHHHTTTTSCEECTTTHHHHTTSS--EEEEEECCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             cccCCCCCCHHHHHHHHHHhCCCCccccChhHHHHhcCCC--ceEEEEecccccchhhHHHHHHHHHHHHHHhcCCCceE
Confidence            5677 78999999999999999999999999999998654  544444332  1    233 57789999999988   9


Q ss_pred             EEEEEeCCCcchhhhhhhhCCC--CCCcceEEEEecCCCeeecCCCCCCHH--HHHHHHHHHHcCCCccC
Q 031686           89 LFVYSQIYPKLKGQIFDYFGVT--CYTSRVIAVASIRKRKKYVLNGELTLS--NVKSFALDFLGDKLRNQ  154 (155)
Q Consensus        89 ~F~~vd~~~~~~~~~~~~~gl~--~~~~P~v~i~~~~~~~kY~~~~~~t~~--~I~~Fi~~f~~Gkl~p~  154 (155)
                      .|+++|.+.  +.+.+++||++  ..+.|+++|.+ ..+.+|.+++++|.+  +|.+|++++++|+++|+
T Consensus       274 ~F~~~D~~~--~~~~l~~~gl~~~~~~~P~~~i~~-~~~~ky~~~~~~t~e~~~l~~f~~~~~~g~~~~~  340 (481)
T 3f8u_A          274 NFAVASRKT--FSHELSDFGLESTAGEIPVVAIRT-AKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRY  340 (481)
T ss_dssp             EEEEEETTT--THHHHGGGTCCCCTTCSCEEEEEC-SSSCEEECCSCCCTTSHHHHHHHHHHHHTCCCCC
T ss_pred             EEEEEcHHH--HHHHHHHcCCCcccCCCcEEEEEc-CCCcccCCCcccCccHHHHHHHHHHHhcCCcccc
Confidence            999999886  78899999998  45799999998 446799988889999  99999999999999986

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.76  E-value=2.7e-18  Score=142.67  Aligned_cols=134  Identities=19%  Similarity=0.232  Sum_probs=118.4

Q ss_pred             EEEeccCC-c---CHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCceEEEEeecC-ChhH-HHHHHHHHHhhcCceEEE
Q 031686           18 CFIFSDVS-F---TISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVH-DSEA-KSIFQETARAFKGKLLFV   91 (155)
Q Consensus        18 ~~~~y~g~-~---~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~-~~~~-~~~~~~vA~~~~~~i~F~   91 (155)
                      ....|+|+ +   +.++|.+||..+.+|+++++|.+|+..+++.+.+++++|.+.. +.+. .+.++++|+++++++.|+
T Consensus       194 ~~~~~~g~~~~~~~~~~l~~fi~~~~~p~v~~~t~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~a~~~~~~i~F~  273 (504)
T 2b5e_A          194 EPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFV  273 (504)
T ss_dssp             EEEECCSCHHHHTSHHHHHHHHHHHSSCSSCBCCHHHHHHHHHTTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTTCEEE
T ss_pred             cccccCCcccccCCHHHHHHHHHhcccCCcccCCHhHHHHHhcCCCcEEEEEecCcccHHHHHHHHHHHHHhcCCeeEEE
Confidence            45578898 7   9999999999999999999999999999999988877777653 2355 889999999999999999


Q ss_pred             EEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCC--CC-----------CCHHHHHHHHHHHHcCCCccC
Q 031686           92 YSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLN--GE-----------LTLSNVKSFALDFLGDKLRNQ  154 (155)
Q Consensus        92 ~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~--~~-----------~t~~~I~~Fi~~f~~Gkl~p~  154 (155)
                      |+|.+.  +.+++++||+ +.+.|+++|++...+.+|.++  ++           ++.+.|.+|+.++..|++.|+
T Consensus       274 ~id~~~--~~~~~~~~gl-~~~~P~v~i~~~~~~~ky~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~g~~~p~  346 (504)
T 2b5e_A          274 SIDARK--FGRHAGNLNM-KEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPI  346 (504)
T ss_dssp             EEEHHH--HTTHHHHTTC-CSCSSEEEEEETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCCC
T ss_pred             EEehhh--hHHHHHHcCC-cccCCEEEEEeCCcCcccCCCCCccchhhccccccccCHHHHHHHHHHHHcCCCChh
Confidence            999885  7789999999 778999999998667789876  55           899999999999999999886

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.28  E-value=5.8e-11  Score=103.17  Aligned_cols=125  Identities=12%  Similarity=0.061  Sum_probs=105.4

Q ss_pred             EEeccCCcCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeC
Q 031686           19 FIFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQI   95 (155)
Q Consensus        19 ~~~y~g~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~   95 (155)
                      +..|+|+++.++|.+|+..+..|+|.++|.+++..+  .+.++++.|...-  .-.. ...+.++|+++++++.|+.+|.
T Consensus       418 ~~~~~g~~~~~~i~~f~~~~~~~~v~~l~~~~~~~~--~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~v~~~~vd~  495 (780)
T 3apo_A          418 YEIHHGKKILYDILAFAKESVNSHVTTLGPQNFPAS--DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDC  495 (780)
T ss_dssp             EEECCSCCCHHHHHHHHHHHHTSCEEECCTTTSCTT--CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEET
T ss_pred             eeecccHhhHHHHHHHhhhccCCCCEecCHHHHHHc--CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEeC
Confidence            566889999999999999999999999999999987  5556766676542  2345 7889999999999999999999


Q ss_pred             CCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCCC
Q 031686           96 YPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKL  151 (155)
Q Consensus        96 ~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gkl  151 (155)
                      +.  ...+++.||++.  +|++++++.  +++|.+.|..+.++|.+|++++++..+
T Consensus       496 ~~--~~~~~~~~~v~~--~Pt~~~~~~--g~~~~~~g~~~~~~l~~fi~~~~~~~v  545 (780)
T 3apo_A          496 TI--HEGLCNMYNIQA--YPTTVVFNQ--SSIHEYEGHHSAEQILEFIEDLRNPSV  545 (780)
T ss_dssp             TT--CHHHHHHTTCCS--SSEEEEEET--TEEEEECSCSCHHHHHHHHHHHHSCSE
T ss_pred             CC--CHHHHHHcCCCc--CCeEEEEcC--CceeeecCcccHHHHHHHHHhhcccce
Confidence            86  578899999985  999999864  566777888999999999999987543

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=98.96  E-value=2.7e-08  Score=77.73  Aligned_cols=122  Identities=16%  Similarity=0.118  Sum_probs=91.4

Q ss_pred             EEeccCCcCHHHHHHHHHhCCCCCeEecC-CCchhhhhcCC-CceEEEEeecCChhH-HHHHHHHHHhhcCceEEEEEeC
Q 031686           19 FIFSDVSFTISVIDDFISLNKIPPMITYS-RETTPLILNSP-LKLLWLFAAVHDSEA-KSIFQETARAFKGKLLFVYSQI   95 (155)
Q Consensus        19 ~~~y~g~~~~~~l~~fI~~~~~P~v~e~~-~~~~~~i~~~~-~~~v~lf~~~~~~~~-~~~~~~vA~~~~~~i~F~~vd~   95 (155)
                      ...|.|.++.+.|.+|+....-|.+.+++ .+.++.+.... .+.+++| +..+  . ...|+++|..+++++.|+.++.
T Consensus       121 ~~~y~G~r~~~~i~~fl~~~~~~~v~~i~~~~~l~~~l~~~~~~~vi~f-s~~~--~~~~~f~~~A~~~~~~~~F~~v~~  197 (298)
T 3ed3_A          121 NEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLF-SKQD--KISPVYKSIALDWLGKFDFYSISN  197 (298)
T ss_dssp             EEECCSCCSHHHHHHHHHTTCCCCEEECSCGGGHHHHHTSCSSEEEEEE-ESSS--SCCHHHHHHHHHTBTTEEEEEEEG
T ss_pred             ceeecCCcCHHHHHHHHHHhcccccEEcCCHHHHHHHHhcCCceEEEEE-cCCC--cchHHHHHHHHHhhcCcEEEEEcc
Confidence            56899999999999999999999999995 46788877764 3446665 3322  3 5689999999999999999987


Q ss_pred             CCcchhhhh--hhhCC----------------CCCCcceEEEEecCCCeeecCCC-CCCHHHHHHHHHH
Q 031686           96 YPKLKGQIF--DYFGV----------------TCYTSRVIAVASIRKRKKYVLNG-ELTLSNVKSFALD  145 (155)
Q Consensus        96 ~~~~~~~~~--~~~gl----------------~~~~~P~v~i~~~~~~~kY~~~~-~~t~~~I~~Fi~~  145 (155)
                      +..  ....  +.|+.                .....|++++++...++.+.+++ .++.+.|.+||.+
T Consensus       198 ~~~--a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~~i~~fi~~  264 (298)
T 3ed3_A          198 KKL--KQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFWEYEGNSINKNDISKFLRD  264 (298)
T ss_dssp             GGC--CCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEEETTTTEEEECCCSSCCHHHHHHHHHH
T ss_pred             hHh--hhhhhhhhhcccCcchhhhhhcccccccccCCCeEEEEcCCCCceEEeccccCCHHHHHHHHHh
Confidence            641  2222  23331                11458999999876565667775 7999999999985

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=98.88  E-value=2.5e-08  Score=79.06  Aligned_cols=122  Identities=14%  Similarity=0.084  Sum_probs=94.2

Q ss_pred             EeccCCcCHHHHHHHHHhCCCCCeEecC-CCchhhhhc-CCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCC
Q 031686           20 IFSDVSFTISVIDDFISLNKIPPMITYS-RETTPLILN-SPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYP   97 (155)
Q Consensus        20 ~~y~g~~~~~~l~~fI~~~~~P~v~e~~-~~~~~~i~~-~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~   97 (155)
                      ..|.|.++.+.|.+||.+...|.+.+++ .+++..+.+ .....++.|+...+......|.++|+.+++++.|+.+..  
T Consensus       102 ~~~~G~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~~~~~A~~~~~~~~f~~~~~--  179 (350)
T 1sji_A          102 IEFDGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSEESEYYKAFEEAAEHFQPYIKFFATFD--  179 (350)
T ss_dssp             EEECSCCCHHHHHHHHHTTSSCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTSHHHHHHHHHHHHTTTTSEEEEECC--
T ss_pred             EEecCCCCHHHHHHHHHHhcCCcceeccchHHHHHHhccCCCcEEEEEECCCCcHHHHHHHHHHHhhccCcEEEEECC--
Confidence            3789999999999999999999999996 567777766 454556777665332226789999999999999998743  


Q ss_pred             cchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCC-CCHHHHHHHHHHHHcC
Q 031686           98 KLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGE-LTLSNVKSFALDFLGD  149 (155)
Q Consensus        98 ~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~-~t~~~I~~Fi~~f~~G  149 (155)
                         +.+.+.+|++   .|++++..........++|+ ++.++|.+|++...-.
T Consensus       180 ---~~~~~~~~v~---~p~i~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p  226 (350)
T 1sji_A          180 ---KGVAKKLSLK---MNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQRP  226 (350)
T ss_dssp             ---HHHHHHHTCC---TTCEEEECTTCSSCEECSSSSCCHHHHHHHHHHHCCC
T ss_pred             ---HHHHHHcCCC---CCcEEEEeCCCCCceecCCCCCCHHHHHHHHHHcCcc
Confidence               3578889997   79999988633333345675 8999999999986443

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.84  E-value=1.1e-07  Score=70.76  Aligned_cols=122  Identities=13%  Similarity=0.140  Sum_probs=97.3

Q ss_pred             eccCCcCHHHHHHHHHhCCCC-------CeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc---
Q 031686           21 FSDVSFTISVIDDFISLNKIP-------PMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK---   87 (155)
Q Consensus        21 ~y~g~~~~~~l~~fI~~~~~P-------~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~---   87 (155)
                      .|.|.++.++|.+|+....-|       .+..++.+++..+...+.+.++.|...-  .-.. ...+.++|++++++   
T Consensus       103 ~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~  182 (241)
T 3idv_A          103 DYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPP  182 (241)
T ss_dssp             ECCSCSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSC
T ss_pred             cccCcccHHHHHHHHhhccCcccccccccceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCc
Confidence            478999999999999987655       4777889999998887766677776543  2234 66888999998765   


Q ss_pred             eEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686           88 LLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus        88 i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +.|+.+|.+.  ...+.+.||+..  +|++++++.  |+...+.|..+.++|.+|+++...
T Consensus       183 v~~~~vd~~~--~~~l~~~~~v~~--~Pt~~~~~~--g~~~~~~g~~~~~~l~~~l~~~~~  237 (241)
T 3idv_A          183 IPLAKVDATA--ETDLAKRFDVSG--YPTLKIFRK--GRPYDYNGPREKYGIVDYMIEQSG  237 (241)
T ss_dssp             CCEEEEETTT--CHHHHHHTTCCS--SSEEEEEET--TEEEECCSCCSHHHHHHHHHHHTT
T ss_pred             EEEEEEECCC--CHHHHHHcCCcc--cCEEEEEEC--CeEEEecCCCCHHHHHHHHHhhhC
Confidence            9999999986  578899999974  899999874  455556788999999999998754

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=98.83  E-value=3.2e-08  Score=79.19  Aligned_cols=120  Identities=14%  Similarity=0.082  Sum_probs=93.0

Q ss_pred             EeccCCcCHHHHHHHHHhCCCCCeEecC-CCchhhhhc-CCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCC
Q 031686           20 IFSDVSFTISVIDDFISLNKIPPMITYS-RETTPLILN-SPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYP   97 (155)
Q Consensus        20 ~~y~g~~~~~~l~~fI~~~~~P~v~e~~-~~~~~~i~~-~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~   97 (155)
                      ..|.|.++.+.|.+||.++..|.+.+++ .+++..+.. .....+++|+...+......|.++|..+++++.|+.+... 
T Consensus       104 ~~y~G~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~-  182 (367)
T 3us3_A          104 IEYDGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFATFDS-  182 (367)
T ss_dssp             EECCSCCSHHHHHHHHHHHHSCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTCHHHHHHHHHHHHHTTTSCEEEECCH-
T ss_pred             EEeCCCCCHHHHHHHHHHhcCCCcEEcCCHHHHHHHhccCCCcEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEECCH-
Confidence            4799999999999999999999999996 477888777 4444577776553322267899999999999999987543 


Q ss_pred             cchhhhhhhhCCCCCCcceEEEEecCCCeeecCCC-CCCHHHHHHHHHHHH
Q 031686           98 KLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNG-ELTLSNVKSFALDFL  147 (155)
Q Consensus        98 ~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~-~~t~~~I~~Fi~~f~  147 (155)
                          .+++.+|++   .|++++.....+....++| .++.+.|.+||+.-.
T Consensus       183 ----~~~~~~~v~---~p~i~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~  226 (367)
T 3us3_A          183 ----KVAKKLTLK---LNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHR  226 (367)
T ss_dssp             ----HHHHHHTCC---TTCEEEECTTCSSCEECSSSSCCHHHHHHHHHHTC
T ss_pred             ----HHHHHcCCC---CCeEEEEcCCCCCCeecCCCCCCHHHHHHHHHHcC
Confidence                578889997   4999988763333344566 489999999998754

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.74  E-value=1.1e-07  Score=82.67  Aligned_cols=127  Identities=16%  Similarity=0.133  Sum_probs=100.3

Q ss_pred             EeccCCcCHHHHHHHHHhCCCCCeEecCCCchhhhhcCC---CceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEE
Q 031686           20 IFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSP---LKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYS   93 (155)
Q Consensus        20 ~~y~g~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~---~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~v   93 (155)
                      ..|.|.++.++|.+||+...-|.|.+++.+++..+....   .+.++.|..+.  .-.. ...+.++|+++++++.|+.+
T Consensus       522 ~~~~g~~~~~~l~~fi~~~~~~~v~~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~v~~~~v  601 (780)
T 3apo_A          522 HEYEGHHSAEQILEFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSV  601 (780)
T ss_dssp             EEECSCSCHHHHHHHHHHHHSCSEEECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred             eeecCcccHHHHHHHHHhhcccceeecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCCeEEEEE
Confidence            467899999999999999999999999999999877652   23366665543  2245 77899999999999999999


Q ss_pred             eCCCcchhhhhhhhCCCCCCcceEEEEecCCCe--ee-cCCC-CCCHHHHHHHHHHHHcCC
Q 031686           94 QIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRK--KY-VLNG-ELTLSNVKSFALDFLGDK  150 (155)
Q Consensus        94 d~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~--kY-~~~~-~~t~~~I~~Fi~~f~~Gk  150 (155)
                      |.+.  +..+.+.+|++.  .|++++.......  +| .++| ..+.++|.+|+++...+.
T Consensus       602 d~~~--~~~l~~~~~v~~--~Pti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~~~  658 (780)
T 3apo_A          602 DCGQ--YHSFCTQENVQR--YPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQA  658 (780)
T ss_dssp             ETTT--THHHHHHTTCCS--SSEEEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTSCCC
T ss_pred             ECcc--hHHHHHHcCCCC--CCeEEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhcccc
Confidence            9986  567788999975  8999998763221  23 3677 789999999999886543

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.73  E-value=1.5e-07  Score=61.28  Aligned_cols=103  Identities=16%  Similarity=0.148  Sum_probs=81.0

Q ss_pred             CCCeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           40 IPPMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        40 ~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      -+.+..++.+++......+.+.++.|....  .-.. ...+.++++++.+++.|+.+|.+.  ...+.+.||+..  .|+
T Consensus         3 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~--~Pt   78 (109)
T 3tco_A            3 EDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDE--NQKIADKYSVLN--IPT   78 (109)
T ss_dssp             CCCCEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT--CHHHHHHTTCCS--SSE
T ss_pred             CCeEEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEcccc--CHHHHHhcCccc--CCE
Confidence            366888999999999888877777777653  2344 678899999999899999999986  578889999974  899


Q ss_pred             EEEEecCCCeeecCCCCCCHHHHHHHHHHHH
Q 031686          117 IAVASIRKRKKYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       117 v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      ++++. ++...+.+.|..+.+.|.+|+++++
T Consensus        79 ~~~~~-~g~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           79 TLIFV-NGQLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EEEEE-TTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEEEc-CCcEEEeeeccCCHHHHHHHHHHHh
Confidence            99884 3222344567789999999999875

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=98.63  E-value=3.5e-07  Score=59.41  Aligned_cols=101  Identities=18%  Similarity=0.132  Sum_probs=77.0

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEE
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAV  119 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i  119 (155)
                      +.+++.+++......+.+.++.|....  .-.. ...+.++++++.+++.|+.+|.+.  ...+.+.||+..  .|++++
T Consensus         3 v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~--~Pt~~~   78 (109)
T 2yzu_A            3 PIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDE--NPKTAMRYRVMS--IPTVIL   78 (109)
T ss_dssp             CEECCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTT--CHHHHHHTTCCS--SSEEEE
T ss_pred             ceEccHhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCC--CHhHHHhCCCCc--CCEEEE
Confidence            578899999888877777777777553  2244 678899999999889999999986  567889999874  899998


Q ss_pred             EecCCCe-eecCCCCCCHHHHHHHHHHHHcC
Q 031686          120 ASIRKRK-KYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus       120 ~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                      +.  .|+ .+.+.|..+.+.|.+|+++.+..
T Consensus        79 ~~--~g~~~~~~~g~~~~~~l~~~l~~~l~~  107 (109)
T 2yzu_A           79 FK--DGQPVEVLVGAQPKRNYQAKIEKHLPA  107 (109)
T ss_dssp             EE--TTEEEEEEESCCCHHHHHHHHHTTC--
T ss_pred             Ee--CCcEeeeEeCCCCHHHHHHHHHHHhhh
Confidence            84  243 33455778899999999987653

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=98.62  E-value=1.2e-06  Score=57.07  Aligned_cols=100  Identities=18%  Similarity=0.175  Sum_probs=75.1

Q ss_pred             CeEecCCCchhhh-hcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686           42 PMITYSRETTPLI-LNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI  117 (155)
Q Consensus        42 ~v~e~~~~~~~~i-~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v  117 (155)
                      .|.+++.+++... ...+++.++.|....  .-.. ...+.++|+++.+++.|+.+|.+.  ...+.+.+|+..  .|++
T Consensus         3 ~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~--~Pt~   78 (108)
T 2trx_A            3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRG--IPTL   78 (108)
T ss_dssp             TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT--CTTHHHHTTCCS--SSEE
T ss_pred             cceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCC--CHHHHHHcCCcc--cCEE
Confidence            4778999998854 455556676776553  1244 677889999998889999999986  567889999874  8999


Q ss_pred             EEEecCCCe-eecCCCCCCHHHHHHHHHHHH
Q 031686          118 AVASIRKRK-KYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       118 ~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      +++.  .|+ .+.+.|..+.+.|.+|++..+
T Consensus        79 ~~~~--~G~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           79 LLFK--NGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EEEE--TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEe--CCEEEEEEecCCCHHHHHHHHHHhh
Confidence            9884  343 334557789999999999875

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=98.61  E-value=1.4e-06  Score=57.23  Aligned_cols=103  Identities=15%  Similarity=0.165  Sum_probs=77.9

Q ss_pred             CCeEecCCCchhhhh-cCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           41 PPMITYSRETTPLIL-NSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        41 P~v~e~~~~~~~~i~-~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      ..+.+++.+++.... ..+.+.++.|....  .-.. ...+.++++++.+++.|+.+|.+.  ...+.+.+|+..  .|+
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~--~Pt   82 (115)
T 1thx_A            7 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP--NPTTVKKYKVEG--VPA   82 (115)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTT--CHHHHHHTTCCS--SSE
T ss_pred             CceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCC--CHHHHHHcCCCc--eeE
Confidence            348889999988654 45556677776653  2345 778899999998889999999986  567889999874  899


Q ss_pred             EEEEecCCCe-eecCCCCCCHHHHHHHHHHHHcC
Q 031686          117 IAVASIRKRK-KYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus       117 v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                      ++++.  .|+ .+.+.|..+.+.|.+|++..+.+
T Consensus        83 ~~~~~--~G~~~~~~~g~~~~~~l~~~l~~~l~~  114 (115)
T 1thx_A           83 LRLVK--GEQILDSTEGVISKDKLLSFLDTHLNN  114 (115)
T ss_dssp             EEEEE--TTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEEc--CCEEEEEecCCCCHHHHHHHHHHHhcC
Confidence            99884  343 33455778999999999998764

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=98.60  E-value=7.8e-07  Score=57.57  Aligned_cols=98  Identities=11%  Similarity=0.047  Sum_probs=76.0

Q ss_pred             CeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           42 PMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        42 ~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      .+.+++.+++.... .+.+.++.|....  .-.. ...+.++++++.+++.|+.+|.+.  ...+.+.||+..  .|+++
T Consensus         4 ~v~~l~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~--~Pt~~   78 (106)
T 3die_A            4 AIVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDE--NPSTAAKYEVMS--IPTLI   78 (106)
T ss_dssp             CCEECCTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCS--BSEEE
T ss_pred             ceEECCHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCc--CHHHHHhCCCcc--cCEEE
Confidence            47788999999888 5656677776553  2345 778899999999889999999986  578889999974  89999


Q ss_pred             EEecCCCe-eecCCCCCCHHHHHHHHHHH
Q 031686          119 VASIRKRK-KYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       119 i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      +++  .|+ ...+.|..+.++|.+|+++.
T Consensus        79 ~~~--~G~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           79 VFK--DGQPVDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             EEE--TTEEEEEEESCCCHHHHHHHHHTT
T ss_pred             EEe--CCeEEEEEeCCCCHHHHHHHHHHh
Confidence            886  343 33455778999999999864

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=98.59  E-value=4.5e-07  Score=58.81  Aligned_cols=99  Identities=14%  Similarity=0.116  Sum_probs=75.8

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEE
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAV  119 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i  119 (155)
                      |.+++.+++......+++.++.|....  .-.. ...+.++++++.+++.|+.+|.+.  ...+.+.+|+..  .|++++
T Consensus         2 v~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~--~Pt~~~   77 (105)
T 1nsw_A            2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE--NPETTSQFGIMS--IPTLIL   77 (105)
T ss_dssp             CEEECTTTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTT--CHHHHHHTTCCS--SSEEEE
T ss_pred             ceeccHHhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcC--CHHHHHHcCCcc--ccEEEE
Confidence            568899999988887777777777553  1244 667889999998889999999986  567889999974  899998


Q ss_pred             EecCCCe-eecCCCCCCHHHHHHHHHHHH
Q 031686          120 ASIRKRK-KYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       120 ~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      +. + |+ .+.+.|..+.+.+.+|+++.+
T Consensus        78 ~~-~-G~~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           78 FK-G-GRPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EE-T-TEEEEEEESCCCHHHHHHHTTTTT
T ss_pred             Ee-C-CeEEEEEecCCCHHHHHHHHHHHh
Confidence            84 2 43 334457778899999987654

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=98.59  E-value=7.7e-07  Score=57.13  Aligned_cols=99  Identities=15%  Similarity=0.096  Sum_probs=75.7

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEE
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAV  119 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i  119 (155)
                      |.+++.+++......+.+.++.|....  .-.. ...+.++++++.+ +.|+.+|.+.  ...+.+.+|+..  .|++.+
T Consensus         1 V~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~--~~~~~~~~~v~~--~Pt~~~   75 (104)
T 2e0q_A            1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDE--NPDIAARYGVMS--LPTVIF   75 (104)
T ss_dssp             CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT--CHHHHHHTTCCS--SCEEEE
T ss_pred             CeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCC--CHHHHHhCCccc--cCEEEE
Confidence            467889999888877766677776553  2244 6788899999887 9999999986  567889999874  899998


Q ss_pred             EecCCCe-eecCCCCCCHHHHHHHHHHHHc
Q 031686          120 ASIRKRK-KYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       120 ~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +.  .|+ .+.+.|..+.+.+.+|++..+.
T Consensus        76 ~~--~g~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           76 FK--DGEPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             EE--TTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EE--CCeEhhhccCCCCHHHHHHHHHHHhc
Confidence            84  243 3344577889999999998764

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.58  E-value=1.7e-06  Score=58.30  Aligned_cols=104  Identities=17%  Similarity=0.092  Sum_probs=78.9

Q ss_pred             CCeEecCCCchhh-hhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           41 PPMITYSRETTPL-ILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        41 P~v~e~~~~~~~~-i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      +.+.+++.+++.. +...+++.++.|....  .-.. ...+.++|+++++.+.|+.+|.+.  ...+.+.||+..  +|+
T Consensus        17 ~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~--~Pt   92 (130)
T 2dml_A           17 DDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADK--HQSLGGQYGVQG--FPT   92 (130)
T ss_dssp             SSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTT--CHHHHHHHTCCS--SSE
T ss_pred             CCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCC--CHHHHHHcCCCc--cCE
Confidence            3478899999887 4455666677776553  2244 678899999998889999999986  567889999874  899


Q ss_pred             EEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          117 IAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       117 v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +++++......+.+.|..+.++|.+|+.+.+.
T Consensus        93 ~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~  124 (130)
T 2dml_A           93 IKIFGANKNKPEDYQGGRTGEAIVDAALSALR  124 (130)
T ss_dssp             EEEESSCTTSCEECCSCCSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCeEEEeecCCCHHHHHHHHHHHHh
Confidence            99998532224556677899999999988763

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=98.57  E-value=6.7e-07  Score=58.48  Aligned_cols=100  Identities=14%  Similarity=0.231  Sum_probs=77.3

Q ss_pred             eEecCCCchhhhh-cCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           43 MITYSRETTPLIL-NSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        43 v~e~~~~~~~~i~-~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      +.+++.+++.... ..+.+.++.|....  .-.. ...+.++++++.+++.|+.+|.+.  ...+.+.||+..  +|+++
T Consensus         6 v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~--~Pt~~   81 (111)
T 3gnj_A            6 LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEE--EKTLFQRFSLKG--VPQIL   81 (111)
T ss_dssp             SEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT--CHHHHHHTTCCS--SCEEE
T ss_pred             ceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCc--ChhHHHhcCCCc--CCEEE
Confidence            6678888888877 56666677776553  2244 678899999999889999999996  678889999974  89999


Q ss_pred             EEecCCCe-eecCCCCCCHHHHHHHHHHHHc
Q 031686          119 VASIRKRK-KYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       119 i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      ++.  .|+ ...+.|..+.+.|.+|+++.+.
T Consensus        82 ~~~--~g~~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           82 YFK--DGEYKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             EEE--TTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEE--CCEEEEEEeccCCHHHHHHHHHHHhc
Confidence            885  243 3345577899999999998764

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=98.56  E-value=1.7e-06  Score=59.95  Aligned_cols=103  Identities=22%  Similarity=0.243  Sum_probs=81.6

Q ss_pred             CeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           42 PMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        42 ~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      .+..++.+++......+++.++.|....  .-.. ...+.++++++.+++.|+.+|.+.  ...+.+.||+..  +|+++
T Consensus        39 ~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~--~Pt~~  114 (148)
T 3p2a_A           39 EVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEA--EPALSTRFRIRS--IPTIM  114 (148)
T ss_dssp             CCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCS--SSEEE
T ss_pred             CceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcC--CHHHHHHCCCCc--cCEEE
Confidence            4778899999988877777777777553  2244 678999999998899999999986  678889999974  89999


Q ss_pred             EEecCCCe-eecCCCCCCHHHHHHHHHHHHcCC
Q 031686          119 VASIRKRK-KYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       119 i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      +++  .|+ ...+.|..+.+.|.+|+++.+...
T Consensus       115 ~~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~  145 (148)
T 3p2a_A          115 LYR--NGKMIDMLNGAVPKAPFDNWLDEQLSRD  145 (148)
T ss_dssp             EEE--TTEEEEEESSCCCHHHHHHHHHHHHHSC
T ss_pred             EEE--CCeEEEEEeCCCCHHHHHHHHHHHhccc
Confidence            886  243 344567889999999999988653

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.56  E-value=2.1e-06  Score=58.66  Aligned_cols=107  Identities=10%  Similarity=0.072  Sum_probs=82.5

Q ss_pred             CCeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc---eEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           41 PPMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK---LLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~---i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      ..+.+++.+++......+++.++.|....  .-.. ...+.+++++++++   +.|+.+|.+.  ...+.+.||+..  +
T Consensus        17 ~~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~--~   92 (140)
T 2dj1_A           17 NGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS--ASMLASKFDVSG--Y   92 (140)
T ss_dssp             TTEEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTT--CHHHHHHTTCCS--S
T ss_pred             CCCEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcc--cHHHHHHCCCCc--c
Confidence            35788899999988887766677776553  1234 66788899988775   9999999986  567889999874  8


Q ss_pred             ceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCCCcc
Q 031686          115 RVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKLRN  153 (155)
Q Consensus       115 P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gkl~p  153 (155)
                      |+++++.  .|+...+.|..+.+.|.+|++..+.....+
T Consensus        93 Pt~~~~~--~G~~~~~~g~~~~~~l~~~l~~~~~~~~~~  129 (140)
T 2dj1_A           93 PTIKILK--KGQAVDYDGSRTQEEIVAKVREVSQPDWTP  129 (140)
T ss_dssp             SEEEEEE--TTEEEECCSCCCHHHHHHHHHHHHSSSCCC
T ss_pred             CeEEEEE--CCcEEEcCCCCCHHHHHHHHHHhcCCCCCC
Confidence            9999885  344445667889999999999998765543

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=98.55  E-value=8.9e-07  Score=72.65  Aligned_cols=123  Identities=15%  Similarity=0.072  Sum_probs=91.7

Q ss_pred             EEeccCCcCHHHHHHHHHhCCCCCeEecC-CCchhhhhcCCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCC
Q 031686           19 FIFSDVSFTISVIDDFISLNKIPPMITYS-RETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYP   97 (155)
Q Consensus        19 ~~~y~g~~~~~~l~~fI~~~~~P~v~e~~-~~~~~~i~~~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~   97 (155)
                      ...|.|.++.+.|.+|+.+...|.+.+++ .+.+..+.+.....+++|+...+.+..+.|.++|..+++++.|+.+... 
T Consensus        88 ~~~~~G~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~f~~~a~~~~~~~~F~~~~~~-  166 (481)
T 3f8u_A           88 AGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVE-  166 (481)
T ss_dssp             EEECCSCSSHHHHHHHHHHHTSCSEEEECSHHHHHHHTTSSSCEEEEEESCTTCHHHHHHHHHHHHHTTTSCEEEECCH-
T ss_pred             eeeecCccCHHHHHHHHHhhcccCceecCCHHHHHHHHhcCCcEEEEEECCCccchHHHHHHHHHHhccCceEEEECCH-
Confidence            35789999999999999999999999995 5667777666655566676543322278999999999999999987443 


Q ss_pred             cchhhhhhhhCCCCCCcceEEEEec------CCCeeecCC-CCCCHHHHHHHHHHHHcC
Q 031686           98 KLKGQIFDYFGVTCYTSRVIAVASI------RKRKKYVLN-GELTLSNVKSFALDFLGD  149 (155)
Q Consensus        98 ~~~~~~~~~~gl~~~~~P~v~i~~~------~~~~kY~~~-~~~t~~~I~~Fi~~f~~G  149 (155)
                          .+++.+|++.   |.+++..+      ..+....++ +.++.+.|.+||+.-.-.
T Consensus       167 ----~~~~~~~v~~---~~i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~~~p  218 (481)
T 3f8u_A          167 ----SLVNEYDDNG---EGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFG  218 (481)
T ss_dssp             ----HHHHHHCSSS---EEEEEECCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHHTTT
T ss_pred             ----HHHHHhCCCC---CcEEEEecccccCccCCcccccCCCCCCHHHHHHHHHHhCCC
Confidence                5778899874   44666662      122344566 678999999999886543

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=98.55  E-value=1.5e-06  Score=56.24  Aligned_cols=99  Identities=15%  Similarity=0.104  Sum_probs=74.1

Q ss_pred             CeEecCCCchhhhh-cCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686           42 PMITYSRETTPLIL-NSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI  117 (155)
Q Consensus        42 ~v~e~~~~~~~~i~-~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v  117 (155)
                      .+.+++.+++.... ..+.+.++.|....  .-.. ...+.++++++.+++.|+.+|.+.  ...+.+.+|+..  .|++
T Consensus         3 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~--~Pt~   78 (107)
T 2i4a_A            3 HTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDD--NPETPNAYQVRS--IPTL   78 (107)
T ss_dssp             CEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTT--CCHHHHHTTCCS--SSEE
T ss_pred             ceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCC--CHHHHHhcCCCc--cCEE
Confidence            47788999987654 45556677776553  1244 677889999998889999999986  567889999864  8999


Q ss_pred             EEEecCCCe-eecCCCCCCHHHHHHHHHHH
Q 031686          118 AVASIRKRK-KYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       118 ~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      +++.  .|+ .+.+.|..+.+.|.+|+++.
T Consensus        79 ~~~~--~G~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           79 MLVR--DGKVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             EEEE--TTEEEEEEESCCCHHHHHHHHHHT
T ss_pred             EEEe--CCEEEEEecCCCCHHHHHHHHHhc
Confidence            9884  343 33455778999999999875

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=98.55  E-value=1.5e-06  Score=57.40  Aligned_cols=101  Identities=14%  Similarity=0.085  Sum_probs=76.9

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEE
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAV  119 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i  119 (155)
                      +.+++.+++.... .+++.++.|....  .-.. ...+.++|+++++++.|+.+|.+.  ...+.+.||+..  .|++++
T Consensus         3 v~~l~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~--~Pt~~~   77 (112)
T 2voc_A            3 IVKATDQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE--NQETAGKYGVMS--IPTLLV   77 (112)
T ss_dssp             CEECCTTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTT--CCSHHHHTTCCS--BSEEEE
T ss_pred             eEEecHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCC--CHHHHHHcCCCc--ccEEEE
Confidence            5678999998877 6666676776543  2244 677889999998889999999986  567889999874  899998


Q ss_pred             EecCCCe-eecCCCCCCHHHHHHHHHHHHcCC
Q 031686          120 ASIRKRK-KYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       120 ~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      +. + |+ .+.+.|..+.++|.+|+++.....
T Consensus        78 ~~-~-G~~~~~~~G~~~~~~l~~~l~~~~~~~  107 (112)
T 2voc_A           78 LK-D-GEVVETSVGFKPKEALQELVNKHLLEH  107 (112)
T ss_dssp             EE-T-TEEEEEEESCCCHHHHHHHHHTTSCSC
T ss_pred             Ee-C-CEEEEEEeCCCCHHHHHHHHHHHHHhh
Confidence            84 3 43 344567789999999998876544

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=98.53  E-value=1.6e-06  Score=59.07  Aligned_cols=99  Identities=18%  Similarity=0.182  Sum_probs=74.4

Q ss_pred             eEecCCCchhhh-hcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           43 MITYSRETTPLI-LNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        43 v~e~~~~~~~~i-~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      |.+++.+++... .+.+++.++.|....  .-.. ...+.++++++.+++.|+.+|.+.  ...+.+.||+..  +|+++
T Consensus        24 v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~--~Pt~~   99 (128)
T 2o8v_B           24 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRG--IPTLL   99 (128)
T ss_dssp             SEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTT--CCTTSGGGTCCS--SSEEE
T ss_pred             cEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCc--cCEEE
Confidence            677888888854 455556666676553  1244 678899999998889999999986  567888899874  89999


Q ss_pred             EEecCCCe-eecCCCCCCHHHHHHHHHHHH
Q 031686          119 VASIRKRK-KYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       119 i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      ++.  .|+ .+.+.|..+.+.|.+|+++.+
T Consensus       100 ~~~--~G~~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B          100 LFK--NGEVAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             EEE--TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEe--CCEEEEEEcCCCCHHHHHHHHHHhh
Confidence            884  343 344567789999999999876

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=1.6e-06  Score=58.54  Aligned_cols=107  Identities=17%  Similarity=0.158  Sum_probs=79.7

Q ss_pred             CCeEecCCCchhhhh-cCCCceEEEEeecC--ChhH-HHHHHHHHHhhc----CceEEEEEeCCCcchhhhhhhhCCCCC
Q 031686           41 PPMITYSRETTPLIL-NSPLKLLWLFAAVH--DSEA-KSIFQETARAFK----GKLLFVYSQIYPKLKGQIFDYFGVTCY  112 (155)
Q Consensus        41 P~v~e~~~~~~~~i~-~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~----~~i~F~~vd~~~~~~~~~~~~~gl~~~  112 (155)
                      ..+.+++.+++.... ..+.+.++.|....  .-.. ...+.++|++++    +++.|+.+|.+.  ...+.+.||+.. 
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~-   83 (133)
T 1x5d_A            7 GDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV--NQVLASRYGIRG-   83 (133)
T ss_dssp             CSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT--CCHHHHHHTCCS-
T ss_pred             CcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC--CHHHHHhCCCCe-
Confidence            347889999988765 45555566676553  1234 667888898887    789999999986  567889999974 


Q ss_pred             CcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCCCc
Q 031686          113 TSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKLR  152 (155)
Q Consensus       113 ~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gkl~  152 (155)
                       +|++++++. ......+.|..+.++|.+|+++.+.....
T Consensus        84 -~Pt~~~~~~-g~~~~~~~G~~~~~~l~~~l~~~~~~~~~  121 (133)
T 1x5d_A           84 -FPTIKIFQK-GESPVDYDGGRTRSDIVSRALDLFSDNAP  121 (133)
T ss_dssp             -SSEEEEEET-TEEEEEECSCCSHHHHHHHHHHHHHHHSC
T ss_pred             -eCeEEEEeC-CCceEEecCCCCHHHHHHHHHHHhhccCC
Confidence             899999985 22334556778999999999998876443

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=98.52  E-value=1.3e-06  Score=59.90  Aligned_cols=104  Identities=14%  Similarity=0.127  Sum_probs=66.1

Q ss_pred             CCeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686           41 PPMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI  117 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v  117 (155)
                      +.+.+++.+++........+.++.|....  .-.. ...+.++++++.+++.|+.+|.+.  ...+.+.||+..  +|++
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~--~Pt~  108 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDE--HPGLAARYGVRS--VPTL  108 (140)
T ss_dssp             ----------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCS--SSEE
T ss_pred             CccccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCC--CHHHHHHCCCCc--cCEE
Confidence            56778888888876555444555565443  1244 678889999998889999999986  567888999864  8999


Q ss_pred             EEEecCCCe-eecCCCCCCHHHHHHHHHHHHcCC
Q 031686          118 AVASIRKRK-KYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       118 ~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      +++.  .|+ .+.+.|..+.+.|.+|++.++.|+
T Consensus       109 ~~~~--~G~~~~~~~G~~~~~~l~~~i~~~l~~~  140 (140)
T 1v98_A          109 VLFR--RGAPVATWVGASPRRVLEERLRPYLEGR  140 (140)
T ss_dssp             EEEE--TTEEEEEEESCCCHHHHHHHHHHHHTCC
T ss_pred             EEEe--CCcEEEEEeCCCCHHHHHHHHHHHHccC
Confidence            9885  343 334557788999999999999874

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=98.50  E-value=1.3e-06  Score=61.54  Aligned_cols=102  Identities=15%  Similarity=0.099  Sum_probs=77.9

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEE
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAV  119 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i  119 (155)
                      +.+++.+++......+.+.++.|....  .-.. ...|.++|+++.+++.|+.+|.+.  ...+.+.||+..  +|++++
T Consensus        49 ~~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~--~~~l~~~~~i~~--~Pt~~~  124 (155)
T 2ppt_A           49 VAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQA--HPAVAGRHRIQG--IPAFIL  124 (155)
T ss_dssp             EEECCHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT--STHHHHHTTCCS--SSEEEE
T ss_pred             CccCCHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCc--cHHHHHHcCCCc--CCEEEE
Confidence            677888888887766667777777553  2244 678899999999889999999986  567889999974  899998


Q ss_pred             EecCCCe-eecCCCCCCHHHHHHHHHHHHcCC
Q 031686          120 ASIRKRK-KYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       120 ~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      +.  .|+ .+.+.|..+.+.|.+|++..+..+
T Consensus       125 ~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~  154 (155)
T 2ppt_A          125 FH--KGRELARAAGARPASELVGFVRGKLGAR  154 (155)
T ss_dssp             EE--TTEEEEEEESCCCHHHHHHHHHHHHC--
T ss_pred             Ee--CCeEEEEecCCCCHHHHHHHHHHHhccC
Confidence            85  243 334567789999999999988653

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=98.49  E-value=1.8e-06  Score=57.67  Aligned_cols=103  Identities=10%  Similarity=0.051  Sum_probs=76.6

Q ss_pred             CCCCeEecCCCchhhh-hcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           39 KIPPMITYSRETTPLI-LNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        39 ~~P~v~e~~~~~~~~i-~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      .-+.+...+.+++.+. .+.+++.++.|....  .-.. ...+.++++++.+++.|+.+|.+.  ...+.+.||+..  .
T Consensus        11 ~~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~--~   86 (119)
T 1w4v_A           11 GSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDD--HTDLAIEYEVSA--V   86 (119)
T ss_dssp             CCSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTT--THHHHHHTTCCS--S
T ss_pred             CceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC--CHHHHHHcCCCc--c
Confidence            3456778888888764 455566677776553  1244 667889999998889999999986  567889999974  8


Q ss_pred             ceEEEEecCCCe-eecCCCCCCHHHHHHHHHHHH
Q 031686          115 RVIAVASIRKRK-KYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       115 P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      |+++++.  .|+ .+.+.|..+.+.|.+|+++++
T Consensus        87 Pt~~~~~--~G~~~~~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           87 PTVLAMK--NGDVVDKFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             SEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             cEEEEEe--CCcEEEEEcCCCCHHHHHHHHHHHh
Confidence            9999884  343 334557779999999999875

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=98.47  E-value=1.9e-06  Score=59.01  Aligned_cols=105  Identities=15%  Similarity=0.180  Sum_probs=77.8

Q ss_pred             CCCeEecCCCchhhhhcC------------CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhh
Q 031686           40 IPPMITYSRETTPLILNS------------PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIF  104 (155)
Q Consensus        40 ~P~v~e~~~~~~~~i~~~------------~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~  104 (155)
                      -+.+.+++.+++......            +.+.++.|....  .-.. ...+.++++++.+++.|+.+|.+.  ...+.
T Consensus        21 ~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~   98 (141)
T 3hxs_A           21 QSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDK--EPELA   98 (141)
T ss_dssp             --CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHH
T ss_pred             CCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCC--CHHHH
Confidence            345777887777765554            556677776553  2344 778899999999899999999986  57889


Q ss_pred             hhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcC
Q 031686          105 DYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus       105 ~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                      +.||+..  +|++++++.. ++...+.|..+.+.|.+||+.++..
T Consensus        99 ~~~~v~~--~Pt~~~~~~~-g~~~~~~G~~~~~~l~~~l~~~l~k  140 (141)
T 3hxs_A           99 RDFGIQS--IPTIWFVPMK-GEPQVNMGALSKEQLKGYIDKVLLK  140 (141)
T ss_dssp             HHTTCCS--SSEEEEECSS-SCCEEEESCCCHHHHHHHHHHTTC-
T ss_pred             HHcCCCC--cCEEEEEeCC-CCEEEEeCCCCHHHHHHHHHHHHcc
Confidence            9999974  8999999754 3333445778999999999988754

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=98.47  E-value=2.6e-06  Score=54.96  Aligned_cols=99  Identities=12%  Similarity=0.135  Sum_probs=73.0

Q ss_pred             eEecCCCchhhhh-cCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           43 MITYSRETTPLIL-NSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        43 v~e~~~~~~~~i~-~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      |..++.+++.... ..+.+.++.|....  .-.. ...+.++++++++++.|+.+|.+.  ...+.+.+|+..  .|+++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~--~Pt~~   77 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE--APGIATQYNIRS--IPTVL   77 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCS--SSEEE
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcc--hHHHHHhCCCCc--ccEEE
Confidence            4678888888754 44556677776553  1244 677889999998889999999986  567889999874  89998


Q ss_pred             EEecCCCe-eecCCCCCCHHHHHHHHHHHH
Q 031686          119 VASIRKRK-KYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       119 i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      +..  .|+ ...+.|..+.+.+.+++++++
T Consensus        78 ~~~--~g~~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           78 FFK--NGERKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             EEE--TTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EEe--CCeEEEEEecCCCHHHHHHHHHhhC
Confidence            875  243 334456788999999998763

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=98.46  E-value=1.2e-06  Score=60.35  Aligned_cols=102  Identities=17%  Similarity=0.202  Sum_probs=78.6

Q ss_pred             CCeEecCCCchh-hhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           41 PPMITYSRETTP-LILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        41 P~v~e~~~~~~~-~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      +.+.+++.+++. .+...+.+.++.|....  .-.. ...+.++|+++.+++.|+.+|.+.  ...+.+.||+..  +|+
T Consensus         6 ~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~--~Pt   81 (140)
T 3hz4_A            6 SSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIAT--NPWTAEKYGVQG--TPT   81 (140)
T ss_dssp             TTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTT--CHHHHHHHTCCE--ESE
T ss_pred             cceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCc--CHhHHHHCCCCc--CCE
Confidence            468889988888 56666666677776553  2244 678899999999999999999986  578889999974  899


Q ss_pred             EEEEecCCCe-eecCCCCCCHHHHHHHHHHHHc
Q 031686          117 IAVASIRKRK-KYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       117 v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      ++++..  |+ .+.+.|..+.+.|.+|++.++.
T Consensus        82 ~~~~~~--G~~~~~~~G~~~~~~l~~~l~~~l~  112 (140)
T 3hz4_A           82 FKFFCH--GRPVWEQVGQIYPSILKNAVRDMLQ  112 (140)
T ss_dssp             EEEEET--TEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEEEeC--CcEEEEEcCCCCHHHHHHHHHHHhc
Confidence            998852  43 3345677899999999998874

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=98.46  E-value=5.8e-06  Score=55.70  Aligned_cols=103  Identities=13%  Similarity=0.105  Sum_probs=76.5

Q ss_pred             CCCeEecCCCchhhhhc-CCCceEEEEeecC--ChhH-HHHHHHHHHhhc-----CceEEEEEeCCCcchhhhhhhhCCC
Q 031686           40 IPPMITYSRETTPLILN-SPLKLLWLFAAVH--DSEA-KSIFQETARAFK-----GKLLFVYSQIYPKLKGQIFDYFGVT  110 (155)
Q Consensus        40 ~P~v~e~~~~~~~~i~~-~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~-----~~i~F~~vd~~~~~~~~~~~~~gl~  110 (155)
                      -+.|.+++.+++..... .+.+.++.|...-  .-.. ...+.++|+++.     +.+.|+.+|.+.  +..+.+.||+.
T Consensus        14 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~   91 (127)
T 3h79_A           14 PSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEK--YPDVIERMRVS   91 (127)
T ss_dssp             CCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTT--CHHHHHHTTCC
T ss_pred             CCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccc--cHhHHHhcCCc
Confidence            34588999999998775 4556677776543  2234 667888887653     569999999996  67888999997


Q ss_pred             CCCcceEEEEecCCC-eeecCCCCCCHHHHHHHHHHH
Q 031686          111 CYTSRVIAVASIRKR-KKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       111 ~~~~P~v~i~~~~~~-~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      .  +|++.+++.... ..+.+.|..+.++|.+||++.
T Consensus        92 ~--~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           92 G--FPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             S--SSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             c--CCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            4  899999975321 124567889999999999864

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=98.46  E-value=2.3e-06  Score=55.58  Aligned_cols=100  Identities=17%  Similarity=0.167  Sum_probs=73.2

Q ss_pred             eEecCCCchhhhh-cCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           43 MITYSRETTPLIL-NSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        43 v~e~~~~~~~~i~-~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      |.+++.+++.... ..+++.++.|....  .-.. ...+.++++++.+++.|+.+|.+.  ...+.+.+|+..  .|+++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~--~Pt~~   78 (107)
T 1dby_A            3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE--SPNVASEYGIRS--IPTIM   78 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHHTCCS--SCEEE
T ss_pred             cEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCC--CHHHHHHCCCCc--CCEEE
Confidence            5667877877744 45556676776543  1244 677889999998889999999986  567889999874  89988


Q ss_pred             EEecCCCeeecCCCCCCHHHHHHHHHHHH
Q 031686          119 VASIRKRKKYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       119 i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      +.. ++...+.+.|..+.+.+.+++++++
T Consensus        79 ~~~-~G~~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           79 VFK-GGKKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             EES-SSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEe-CCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            874 2223344557788999999999875

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=3.7e-06  Score=56.47  Aligned_cols=106  Identities=10%  Similarity=0.016  Sum_probs=80.3

Q ss_pred             CCCeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCcchhhhhhhhCCCCCCcc
Q 031686           40 IPPMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG-KLLFVYSQIYPKLKGQIFDYFGVTCYTSR  115 (155)
Q Consensus        40 ~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~~~~~~~~~gl~~~~~P  115 (155)
                      -..+.+++.+++.++...  +.++.|....  .-.. ...+.++|+++.+ ++.|+.+|.+.  ...+.+.||+..  +|
T Consensus         6 ~~~v~~l~~~~f~~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~--~P   79 (126)
T 1x5e_A            6 SGNVRVITDENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTE--QPGLSGRFIINA--LP   79 (126)
T ss_dssp             CCSEEECCTTTHHHHTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTT--CHHHHHHTTCCS--SS
T ss_pred             CCccEEecHHHHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcC--CHHHHHHcCCcc--cC
Confidence            345888999999987654  3555665443  2244 6778889998886 79999999986  567889999864  89


Q ss_pred             eEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCCCcc
Q 031686          116 VIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKLRN  153 (155)
Q Consensus       116 ~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gkl~p  153 (155)
                      +++++.  .|+...+.|..+.+.|.+|+++.+...++|
T Consensus        80 t~~~~~--~G~~~~~~G~~~~~~l~~~l~~~~~~~~~~  115 (126)
T 1x5e_A           80 TIYHCK--DGEFRRYQGPRTKKDFINFISDKEWKSIEP  115 (126)
T ss_dssp             EEEEEE--TTEEEECCSCCCHHHHHHHHHTCGGGGSCE
T ss_pred             EEEEEe--CCeEEEeecCCCHHHHHHHHHHHhhccCCC
Confidence            999884  355555677889999999999988766665

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=98.43  E-value=4.6e-06  Score=54.63  Aligned_cols=101  Identities=14%  Similarity=0.130  Sum_probs=75.1

Q ss_pred             CeEecCCCchhh-hhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686           42 PMITYSRETTPL-ILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI  117 (155)
Q Consensus        42 ~v~e~~~~~~~~-i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v  117 (155)
                      .|.+++.+++.. +...+++.++.|....  .-.. ...+.++++++.+++.|+.+|.+.  ...+.+.||+..  .|++
T Consensus         6 ~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~--~Pt~   81 (112)
T 1t00_A            6 TLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDE--NPGTAAKYGVMS--IPTL   81 (112)
T ss_dssp             CCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCS--SSEE
T ss_pred             eEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCC--CHHHHHhCCCCc--ccEE
Confidence            367888888865 4455556677776553  1244 667889999998889999999986  567889999874  8999


Q ss_pred             EEEecCCCe-eecCCCCCCHHHHHHHHHHHHc
Q 031686          118 AVASIRKRK-KYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       118 ~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      ++..  .|+ .+.+.|..+.+.|.+|++.+++
T Consensus        82 ~~~~--~G~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           82 NVYQ--GGEVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             EEEE--TTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             EEEe--CCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence            8875  343 3445677889999999998865

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=98.42  E-value=1.1e-05  Score=58.57  Aligned_cols=116  Identities=15%  Similarity=0.171  Sum_probs=85.5

Q ss_pred             HHHHHHhCCCCCeEecCCCchhhhhcCC--CceEEEEeec---C--C----hhH-HHHHHHHHHhhc-----CceEEEEE
Q 031686           31 IDDFISLNKIPPMITYSRETTPLILNSP--LKLLWLFAAV---H--D----SEA-KSIFQETARAFK-----GKLLFVYS   93 (155)
Q Consensus        31 l~~fI~~~~~P~v~e~~~~~~~~i~~~~--~~~v~lf~~~---~--~----~~~-~~~~~~vA~~~~-----~~i~F~~v   93 (155)
                      +.+.+....-..|.++|.+|+.++...+  .++++.|...   .  .    =.. .-.|.++|+++.     +++.|+.+
T Consensus         8 ~~~l~~l~~~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kv   87 (178)
T 3ga4_A            8 IDDILQLKDDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTV   87 (178)
T ss_dssp             CHHHHTTCCTTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred             HHHHHHhhccCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEE
Confidence            4455555556679999999999987543  3456666651   1  1    134 678999999998     88999999


Q ss_pred             eCCCcchhhhhhhhCCCCCCcceEEEEecCCCe-------------eecCC-C-CCCHHHHHHHHHHHHcCC
Q 031686           94 QIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRK-------------KYVLN-G-ELTLSNVKSFALDFLGDK  150 (155)
Q Consensus        94 d~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~-------------kY~~~-~-~~t~~~I~~Fi~~f~~Gk  150 (155)
                      |.++  ++.+.+.||+..  +|++.++....+.             .|.+. + ..+++.|.+||.+-..-+
T Consensus        88 D~d~--~~~la~~~~I~s--iPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~  155 (178)
T 3ga4_A           88 DVNE--VPQLVKDLKLQN--VPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNIS  155 (178)
T ss_dssp             ETTT--CHHHHHHTTCCS--SCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCC
T ss_pred             ECcc--CHHHHHHcCCCC--CCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCC
Confidence            9997  789999999974  8999999864221             34444 4 688999999999865533

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=98.40  E-value=4.6e-06  Score=57.02  Aligned_cols=104  Identities=15%  Similarity=0.196  Sum_probs=76.3

Q ss_pred             CeEecCCCchhhhhc------------CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhh
Q 031686           42 PMITYSRETTPLILN------------SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDY  106 (155)
Q Consensus        42 ~v~e~~~~~~~~i~~------------~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~  106 (155)
                      .+.+++.+++.....            .+++.++.|....  .-.. ...+.++|+++++++.|+.+|.+.  ...+.+.
T Consensus        10 ~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~--~~~l~~~   87 (136)
T 2l5l_A           10 KVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEK--EQELAGA   87 (136)
T ss_dssp             SEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHH
T ss_pred             ceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCC--CHHHHHH
Confidence            466677777766544            3456676776553  2244 677889999998889999999986  5678899


Q ss_pred             hCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCC
Q 031686          107 FGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       107 ~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      ||+..  +|++++++.+ |+...+.|..+.+.|.+||+......
T Consensus        88 ~~v~~--~Pt~~~~~~~-G~~~~~~G~~~~~~l~~~l~~~~~~~  128 (136)
T 2l5l_A           88 FGIRS--IPSILFIPME-GKPEMAQGAMPKASFKKAIDEFLLKK  128 (136)
T ss_dssp             TTCCS--SCEEEEECSS-SCCEEEESCCCHHHHHHHHHHHHTSC
T ss_pred             cCCCC--CCEEEEECCC-CcEEEEeCCCCHHHHHHHHHHHhhcc
Confidence            99874  8999999654 33323456789999999999987653

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=98.39  E-value=5.8e-06  Score=55.50  Aligned_cols=104  Identities=9%  Similarity=0.071  Sum_probs=74.6

Q ss_pred             eEecCCCchh-----hhhcCCCceEEEEeecC-C-hhH-HHHHHHHHHhhcCceEEEEEe--CCCcchhhhhhhhCCCCC
Q 031686           43 MITYSRETTP-----LILNSPLKLLWLFAAVH-D-SEA-KSIFQETARAFKGKLLFVYSQ--IYPKLKGQIFDYFGVTCY  112 (155)
Q Consensus        43 v~e~~~~~~~-----~i~~~~~~~v~lf~~~~-~-~~~-~~~~~~vA~~~~~~i~F~~vd--~~~~~~~~~~~~~gl~~~  112 (155)
                      +..++.+++.     .....+++.++.|.... . -.. ...+.++++++++++.|+.+|  .+.  ...+.+.||+.. 
T Consensus         6 ~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~--~~~~~~~~~v~~-   82 (126)
T 2l57_A            6 IKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEK--NIDLAYKYDANI-   82 (126)
T ss_dssp             SSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSH--HHHHHHHTTCCS-
T ss_pred             cCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc--hHHHHHHcCCcc-
Confidence            4555655555     44455666676676543 1 234 667889999998889999999  664  567889999864 


Q ss_pred             CcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCC
Q 031686          113 TSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       113 ~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                       +|++++++.++...+.+.|..+.+.|.++++......
T Consensus        83 -~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~~  119 (126)
T 2l57_A           83 -VPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVKE  119 (126)
T ss_dssp             -SSEEEEECTTCCEEEEEESCCCHHHHHHHHHHHCCCC
T ss_pred             -eeEEEEECCCCCEEEEecCCCCHHHHHHHHHHHhccc
Confidence             8999999854333444567789999999999987554

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=98.39  E-value=2.7e-06  Score=56.45  Aligned_cols=106  Identities=12%  Similarity=0.054  Sum_probs=76.7

Q ss_pred             CCCCCeEecCCCchhhh-hcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCC
Q 031686           38 NKIPPMITYSRETTPLI-LNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYT  113 (155)
Q Consensus        38 ~~~P~v~e~~~~~~~~i-~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~  113 (155)
                      ..-..+.+++.+++... ...+.+.++.|....  .-.. ...+.++|+++.+++.|+.+|.+.  ...+.+.+|+..  
T Consensus         9 ~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~--   84 (121)
T 2i1u_A            9 SEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDT--NPETARNFQVVS--   84 (121)
T ss_dssp             ---CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCS--
T ss_pred             hhcccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC--CHHHHHhcCCCc--
Confidence            33455788999888754 455666677776553  2244 677899999998889999999986  567889999874  


Q ss_pred             cceEEEEecCCCe-eecCCCCCCHHHHHHHHHHHHcC
Q 031686          114 SRVIAVASIRKRK-KYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus       114 ~P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                      .|+++++.  .|+ .+.+.|..+.+.|.+|++..+.+
T Consensus        85 ~Pt~~~~~--~g~~~~~~~G~~~~~~l~~~l~~~l~~  119 (121)
T 2i1u_A           85 IPTLILFK--DGQPVKRIVGAKGKAALLRELSDVVPN  119 (121)
T ss_dssp             SSEEEEEE--TTEEEEEEESCCCHHHHHHHTCSCCCC
T ss_pred             CCEEEEEE--CCEEEEEecCCCCHHHHHHHHHHHHhh
Confidence            89998886  343 33455778899999999876543

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=98.38  E-value=3.4e-06  Score=55.51  Aligned_cols=102  Identities=12%  Similarity=0.104  Sum_probs=77.4

Q ss_pred             CeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhc---CceEEEEEeCCCcchhhhhhhhCCCCCCcc
Q 031686           42 PMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFK---GKLLFVYSQIYPKLKGQIFDYFGVTCYTSR  115 (155)
Q Consensus        42 ~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~---~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P  115 (155)
                      .+.+++.+++......+.+.++.|....  .-.. ...+.+++++++   ..+.|+.+|.+.  ...+.+.+|+..  .|
T Consensus         8 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~--~P   83 (120)
T 1mek_A            8 HVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE--ESDLAQQYGVRG--YP   83 (120)
T ss_dssp             TEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT--CCSSHHHHTCCS--SS
T ss_pred             CcEEechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCC--CHHHHHHCCCCc--cc
Confidence            4788999999998887777777776653  2234 677888998886   368999999986  457888999874  89


Q ss_pred             eEEEEecCCCee---ecCCCCCCHHHHHHHHHHHHcC
Q 031686          116 VIAVASIRKRKK---YVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus       116 ~v~i~~~~~~~k---Y~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                      +++++..  |+.   ..+.|..+.+.|.+|+++.++.
T Consensus        84 t~~~~~~--g~~~~~~~~~g~~~~~~l~~~l~~~~~~  118 (120)
T 1mek_A           84 TIKFFRN--GDTASPKEYTAGREADDIVNWLKKRTGP  118 (120)
T ss_dssp             EEEEEES--SCSSSCEECCCCSSHHHHHHHHHTTSCC
T ss_pred             EEEEEeC--CCcCCcccccCccCHHHHHHHHHhccCC
Confidence            9998853  322   4556778999999999887654

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.38  E-value=7.2e-06  Score=60.84  Aligned_cols=108  Identities=17%  Similarity=0.160  Sum_probs=83.4

Q ss_pred             CCCeEecCCCchhh-hhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcc
Q 031686           40 IPPMITYSRETTPL-ILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSR  115 (155)
Q Consensus        40 ~P~v~e~~~~~~~~-i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P  115 (155)
                      -+.+..+|.+++.. +..++++.++.|...-  .-.. ...+.++|+++++++.|+.+|.+.  ...+.+.||+..  +|
T Consensus        11 ~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~--~P   86 (222)
T 3dxb_A           11 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRG--IP   86 (222)
T ss_dssp             SCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CTTTGGGGTCCS--BS
T ss_pred             CCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCC--CHHHHHHcCCCc--CC
Confidence            35678899999987 5666666777777553  2244 778999999999889999999986  567889999974  89


Q ss_pred             eEEEEecCCCe-eecCCCCCCHHHHHHHHHHHHcCCCcc
Q 031686          116 VIAVASIRKRK-KYVLNGELTLSNVKSFALDFLGDKLRN  153 (155)
Q Consensus       116 ~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~Gkl~p  153 (155)
                      ++++++.  |+ ...+.|..+.+.|.+|+++.+.+...+
T Consensus        87 t~~~~~~--G~~~~~~~G~~~~~~l~~~l~~~l~~~~~~  123 (222)
T 3dxb_A           87 TLLLFKN--GEVAATKVGALSKGQLKEFLDANLAGSAME  123 (222)
T ss_dssp             EEEEEET--TEEEEEEESCCCHHHHHHHHHHHSCCSCCB
T ss_pred             EEEEEEC--CeEEEEeccccChHHHHHHHHhhccccccc
Confidence            9999862  43 334457789999999999999876543

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=98.33  E-value=7.6e-06  Score=52.77  Aligned_cols=97  Identities=8%  Similarity=0.027  Sum_probs=71.2

Q ss_pred             eEecCC-Cchhhhhc--CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           43 MITYSR-ETTPLILN--SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        43 v~e~~~-~~~~~i~~--~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      |.+++. +++.....  .+.+.++.|....  .-.. ...+.++++++++++.|+.+|.+.  ...+.+.+|+..  .|+
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~--~Pt   77 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE--CEDIAMEYNISS--MPT   77 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCS--SSE
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccc--hHHHHHHcCCCc--ccE
Confidence            566776 77777776  5556676776653  2244 677889999998889999999986  567889999874  899


Q ss_pred             EEEEecCCCe-eecCCCCCCHHHHHHHHHHH
Q 031686          117 IAVASIRKRK-KYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       117 v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      +++..  .|+ ...+.| .+.+.|.+|++++
T Consensus        78 ~~~~~--~G~~~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           78 FVFLK--NGVKVEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             EEEEE--TTEEEEEEES-CCHHHHHHHHHHT
T ss_pred             EEEEc--CCcEEEEEcC-CCHHHHHHHHHHh
Confidence            88875  243 233445 6889999999875

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=98.33  E-value=1.8e-06  Score=58.42  Aligned_cols=100  Identities=18%  Similarity=0.187  Sum_probs=67.0

Q ss_pred             eEecCCCchhh-hhcCCCceEEEEeec--C--------------ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhh
Q 031686           43 MITYSRETTPL-ILNSPLKLLWLFAAV--H--------------DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIF  104 (155)
Q Consensus        43 v~e~~~~~~~~-i~~~~~~~v~lf~~~--~--------------~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~  104 (155)
                      +.+++.+++.. +...+++.++.|...  .              .-.. ...+.++++++.+++.|+.+|.+.  ...+.
T Consensus         5 v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~--~~~l~   82 (123)
T 1oaz_A            5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTA   82 (123)
T ss_dssp             CEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTS--CTTTG
T ss_pred             cEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCC--CHHHH
Confidence            67889899874 445666667777654  2              2233 567888888888889999999986  56788


Q ss_pred             hhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHH
Q 031686          105 DYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       105 ~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      +.+|+..  +|+++++. ++.....+.|..+.++|.+|++..+
T Consensus        83 ~~~~v~~--~Pt~~~~~-~G~~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           83 PKYGIRG--IPTLLLFK-NGEVAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             GGGTCCB--SSEEEEEE-SSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred             HHcCCCc--cCEEEEEE-CCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            9999975  89999884 3222334567788999999997653

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=98.33  E-value=6.6e-06  Score=60.43  Aligned_cols=107  Identities=16%  Similarity=0.160  Sum_probs=82.4

Q ss_pred             CCeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686           41 PPMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI  117 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v  117 (155)
                      +.+..++.+++......+.+.++.|...-  .-.. ...+.++|+++.+++.|+.+|.+.  ...+.+.+|+..  +|++
T Consensus        97 ~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~--~Pt~  172 (210)
T 3apq_A           97 PEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGD--DRMLCRMKGVNS--YPSL  172 (210)
T ss_dssp             TTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTT--CHHHHHHTTCCS--SSEE
T ss_pred             CceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCc--cHHHHHHcCCCc--CCeE
Confidence            45778888888877777777777777653  2244 678899999999889999999986  567889999974  8999


Q ss_pred             EEEecCCCeeecCCCCCCHHHHHHHHHHHHcCCCc
Q 031686          118 AVASIRKRKKYVLNGELTLSNVKSFALDFLGDKLR  152 (155)
Q Consensus       118 ~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gkl~  152 (155)
                      +++. .+.....+.|..+.+.|.+|++..+...+.
T Consensus       173 ~~~~-~G~~~~~~~G~~~~~~l~~~i~~~l~~~~~  206 (210)
T 3apq_A          173 FIFR-SGMAAVKYNGDRSKESLVAFAMQHVRSTVT  206 (210)
T ss_dssp             EEEC-TTSCCEECCSCCCHHHHHHHHHHHHHCCSS
T ss_pred             EEEE-CCCceeEecCCCCHHHHHHHHHHhCcccce
Confidence            9883 222234566788999999999999877654

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=98.30  E-value=3.9e-06  Score=55.87  Aligned_cols=102  Identities=16%  Similarity=0.096  Sum_probs=75.3

Q ss_pred             eEecCCCchh-hhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           43 MITYSRETTP-LILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        43 v~e~~~~~~~-~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      +.+++.+++. .+...+.+.++.|....  .-.. ...+.++|+++.+++.|+.+|.+.  ...+.+.||+..  +|+++
T Consensus         5 v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~--~Pt~~   80 (122)
T 3aps_A            5 SIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQA--YPQTCQKAGIKA--YPSVK   80 (122)
T ss_dssp             SEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT--CHHHHHHTTCCS--SSEEE
T ss_pred             hhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcC--CHHHHHHcCCCc--cceEE
Confidence            6778888884 46666666777776553  2244 678889999999889999999986  567889999974  89999


Q ss_pred             EEecCCCeeecCCC----CCCHHHHHHHHHHHHcC
Q 031686          119 VASIRKRKKYVLNG----ELTLSNVKSFALDFLGD  149 (155)
Q Consensus       119 i~~~~~~~kY~~~~----~~t~~~I~~Fi~~f~~G  149 (155)
                      +++.. +....+.|    ..+.+.|.+|++..++.
T Consensus        81 ~~~~~-~~~~~~~g~~~~~~~~~~l~~~l~~~l~~  114 (122)
T 3aps_A           81 LYQYE-RAKKSIWEEQINSRDAKTIAALIYGKLET  114 (122)
T ss_dssp             EEEEE-GGGTEEEEEEECCSCHHHHHHHHHHHHHC
T ss_pred             EEeCC-CccceeeccccCcCCHHHHHHHHHHHHHh
Confidence            98753 22222223    37999999999998753

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=98.29  E-value=7.1e-06  Score=53.59  Aligned_cols=99  Identities=15%  Similarity=0.221  Sum_probs=72.1

Q ss_pred             eEec-CCCchhhhhcC----CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           43 MITY-SRETTPLILNS----PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        43 v~e~-~~~~~~~i~~~----~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      +.++ +.+++......    +++.++.|....  .-.. ...+.++++++.+++.|+.+|.+.  ...+.+.||+..  +
T Consensus         4 v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~--~   79 (112)
T 1ep7_A            4 VIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA--VAAVAEAAGITA--M   79 (112)
T ss_dssp             EEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT--THHHHHHHTCCB--S
T ss_pred             EEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCc--hHHHHHHcCCCc--c
Confidence            5566 34667766654    566677776553  1244 667889999998889999999986  567889999874  8


Q ss_pred             ceEEEEecCCCe-eecCCCCCCHHHHHHHHHHHHc
Q 031686          115 RVIAVASIRKRK-KYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       115 P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      |++++..  .|+ .+.+.|. +.+.|.+|++.+++
T Consensus        80 Pt~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           80 PTFHVYK--DGVKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             SEEEEEE--TTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             cEEEEEE--CCeEEEEEcCC-CHHHHHHHHHHHhc
Confidence            9988775  243 3344566 89999999998875

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=98.29  E-value=5.9e-06  Score=55.00  Aligned_cols=99  Identities=11%  Similarity=0.120  Sum_probs=72.7

Q ss_pred             CCeEecCCCchhhhhc--CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcc
Q 031686           41 PPMITYSRETTPLILN--SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSR  115 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~--~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P  115 (155)
                      +.....+.+++.++..  .+++.++.|...-  .-.. ...+.++|+++.+ +.|+.+|.+.  ...+.+.||+..  +|
T Consensus        12 ~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~--~~~l~~~~~v~~--~P   86 (116)
T 3qfa_C           12 SVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDD--CQDVASECEVKS--MP   86 (116)
T ss_dssp             CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETTT--THHHHHHTTCCS--SS
T ss_pred             cccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCC--CHHHHHHcCCcc--cc
Confidence            4455566777888777  6666777776553  2244 6788899999877 9999999986  678889999974  89


Q ss_pred             eEEEEecCCCeeecCCCCCCHHHHHHHHHHH
Q 031686          116 VIAVASIRKRKKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       116 ~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      +++++. .+.....+.|. +.+.|.++++++
T Consensus        87 t~~~~~-~G~~~~~~~G~-~~~~l~~~l~~~  115 (116)
T 3qfa_C           87 TFQFFK-KGQKVGEFSGA-NKEKLEATINEL  115 (116)
T ss_dssp             EEEEES-SSSEEEEEESC-CHHHHHHHHHHH
T ss_pred             EEEEEe-CCeEEEEEcCC-CHHHHHHHHHHh
Confidence            999884 22233344566 899999999875

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=98.28  E-value=1.6e-05  Score=51.55  Aligned_cols=98  Identities=10%  Similarity=0.077  Sum_probs=73.6

Q ss_pred             CeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhc---CceEEEEEeCCCcchhhhhhhhCCCCCCcc
Q 031686           42 PMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFK---GKLLFVYSQIYPKLKGQIFDYFGVTCYTSR  115 (155)
Q Consensus        42 ~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~---~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P  115 (155)
                      .+.++|.+++..... +.+.++.|....  .-.. ...+.++|+++.   ..+.|+.+|.+.  ...+.+.||+..  +|
T Consensus         6 ~v~~l~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~--~P   80 (111)
T 3uvt_A            6 TVLALTENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA--ERNICSKYSVRG--YP   80 (111)
T ss_dssp             CSEECCTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTT--CHHHHHHTTCCS--SS
T ss_pred             cceEcChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccc--cHhHHHhcCCCc--cc
Confidence            478899999998887 446666676553  2244 678888998875   469999999986  578889999974  89


Q ss_pred             eEEEEecCCCeeecCCCCCCHHHHHHHHHH
Q 031686          116 VIAVASIRKRKKYVLNGELTLSNVKSFALD  145 (155)
Q Consensus       116 ~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~  145 (155)
                      +++++.. +.....+.|..+.+.|.+|+++
T Consensus        81 t~~~~~~-g~~~~~~~g~~~~~~l~~~l~~  109 (111)
T 3uvt_A           81 TLLLFRG-GKKVSEHSGGRDLDSLHRFVLS  109 (111)
T ss_dssp             EEEEEET-TEEEEEECSCCSHHHHHHHHHH
T ss_pred             EEEEEeC-CcEEEeccCCcCHHHHHHHHHh
Confidence            9998853 2223445677899999999976

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.27  E-value=2.4e-05  Score=57.83  Aligned_cols=105  Identities=10%  Similarity=0.073  Sum_probs=83.1

Q ss_pred             CCeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc---eEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           41 PPMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK---LLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~---i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      ..|.+++.+++......+.+.++.|...-  .-.. ...+.++|+++++.   +.|+.+|.+.  ...+.+.||+..  +
T Consensus        15 ~~v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~--~   90 (241)
T 3idv_A           15 NGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS--ASVLASRFDVSG--Y   90 (241)
T ss_dssp             TTEEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTT--CHHHHHHTTCCS--S
T ss_pred             CCcEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccC--CHHHHHhcCCCc--C
Confidence            45888999999998888877777776553  2244 67889999988876   9999999986  578889999974  8


Q ss_pred             ceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCCC
Q 031686          115 RVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKL  151 (155)
Q Consensus       115 P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gkl  151 (155)
                      |++++++.  |+...+.|..+.+.|.+|+........
T Consensus        91 Pt~~~~~~--g~~~~~~g~~~~~~l~~~i~~~~~~~~  125 (241)
T 3idv_A           91 PTIKILKK--GQAVDYEGSRTQEEIVAKVREVSQPDW  125 (241)
T ss_dssp             SEEEEEET--TEEEECCSCSCHHHHHHHHHHHHSTTC
T ss_pred             CEEEEEcC--CCcccccCcccHHHHHHHHhhccCccc
Confidence            99999873  444456678999999999999887643

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=98.27  E-value=1.3e-05  Score=54.31  Aligned_cols=100  Identities=15%  Similarity=0.128  Sum_probs=75.3

Q ss_pred             CeEecCC-CchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686           42 PMITYSR-ETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI  117 (155)
Q Consensus        42 ~v~e~~~-~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v  117 (155)
                      .+.+++. +++......+.+.++.|....  .-.. ...+.++++++. ++.|+.+|.+.  ...+.+.||+..  +|++
T Consensus        20 mv~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~--~~~l~~~~~v~~--~Pt~   94 (125)
T 1r26_A           20 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADN--NSEIVSKCRVLQ--LPTF   94 (125)
T ss_dssp             CCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTT--CHHHHHHTTCCS--SSEE
T ss_pred             ceEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCC--CHHHHHHcCCCc--ccEE
Confidence            4788888 888888877777777777553  2244 667888999884 59999999986  567889999874  8998


Q ss_pred             EEEecCCCe-eecCCCCCCHHHHHHHHHHHHcC
Q 031686          118 AVASIRKRK-KYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus       118 ~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                      +++.  .|+ ...+.| .+.+.|.+||+.++..
T Consensus        95 ~i~~--~G~~~~~~~G-~~~~~l~~~l~~~l~~  124 (125)
T 1r26_A           95 IIAR--SGKMLGHVIG-ANPGMLRQKLRDIIKD  124 (125)
T ss_dssp             EEEE--TTEEEEEEES-SCHHHHHHHHHHHHHC
T ss_pred             EEEe--CCeEEEEEeC-CCHHHHHHHHHHHhcC
Confidence            8874  243 233445 6889999999998753

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=98.25  E-value=1.2e-05  Score=64.45  Aligned_cols=119  Identities=12%  Similarity=0.091  Sum_probs=74.6

Q ss_pred             eccCCcCHHHHHHHHHhCCCCCeEecCC-CchhhhhcCCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCCcc
Q 031686           21 FSDVSFTISVIDDFISLNKIPPMITYSR-ETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKL   99 (155)
Q Consensus        21 ~y~g~~~~~~l~~fI~~~~~P~v~e~~~-~~~~~i~~~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~~~   99 (155)
                      .|.|.++.+.|.+||.+..-|.+.+++. +.+.. +....+.++.|+...+....+.|.++|..+++++.|+.+..+   
T Consensus        98 ~~~G~~~~~~l~~~i~~~~~~~v~~l~~~~~l~~-l~~~~~~~v~ff~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~---  173 (382)
T 2r2j_A           98 EYRGQRSVKALADYIRQQKSDPIQEIRDLAEITT-LDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGD---  173 (382)
T ss_dssp             ECCSCCSHHHHHHHHHHHHSCCCEEC-------------CCEEEEEESCSSSHHHHHHHHHHHHHTTTCEEEEEESC---
T ss_pred             eecCcchHHHHHHHHHHhccCCceecCCHHHHHH-hcCCCCEEEEEECCCCChhHHHHHHHHHHhhccceEEEEehh---
Confidence            5899999999999999999999999964 55666 555556566776554322267899999999999998887653   


Q ss_pred             hhhhhhhhCCCCCCcceEEEEecC-CCeeecCCCCC-CHHHHHHHHHHHHcC
Q 031686          100 KGQIFDYFGVTCYTSRVIAVASIR-KRKKYVLNGEL-TLSNVKSFALDFLGD  149 (155)
Q Consensus       100 ~~~~~~~~gl~~~~~P~v~i~~~~-~~~kY~~~~~~-t~~~I~~Fi~~f~~G  149 (155)
                         +.+.+|++.  .| ++..... ......++|++ +.++|.+||+...-.
T Consensus       174 ---~~~~~~v~~--~p-i~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p  219 (382)
T 2r2j_A          174 ---VSKPERYSG--DN-IIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVP  219 (382)
T ss_dssp             ---C----------CE-EEEECSSSSSCCEECCSCTTCHHHHHHHHHHHHSC
T ss_pred             ---hHHhhCCCC--Cc-eEECCCCCCCcCcccCCCCCCHHHHHHHHHhcccC
Confidence               345566653  57 5444331 12234567788 899999999986543

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.24  E-value=5.5e-06  Score=61.32  Aligned_cols=120  Identities=11%  Similarity=0.020  Sum_probs=89.9

Q ss_pred             EeccCCcCHHHHHHHHHhCC--CCCeEecCCCchhhhhcCCCce-EEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEE
Q 031686           20 IFSDVSFTISVIDDFISLNK--IPPMITYSRETTPLILNSPLKL-LWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYS   93 (155)
Q Consensus        20 ~~y~g~~~~~~l~~fI~~~~--~P~v~e~~~~~~~~i~~~~~~~-v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~v   93 (155)
                      ..|.|..+.+++.+|+....  -+.+.+++.+++..+...+.+. ++.|....  .-.. ...+.++|+++ +++.|+.+
T Consensus        95 ~~~~G~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~-~~v~~~~v  173 (229)
T 2ywm_A           95 IRYIGLPAGLEFTTLINGIFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAN-DYITSKVI  173 (229)
T ss_dssp             EEEESCCCTTHHHHHHHHHHHHHTTCCSCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHC-TTEEEEEE
T ss_pred             ceecCCccHHHHHHHHHHHHhccCCccCCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHC-CCeEEEEE
Confidence            45778888899999988742  1346778888888877666677 55576553  2244 67888899988 57999999


Q ss_pred             eCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686           94 QIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus        94 d~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      |.+.  +..+.+.||+..  +|++++ +   |+...+.|..+.+.|.+|++..+.
T Consensus       174 d~~~--~~~l~~~~~v~~--~Pt~~~-~---G~~~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          174 DASE--NQDLAEQFQVVG--VPKIVI-N---KGVAEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             EGGG--CHHHHHHTTCCS--SSEEEE-G---GGTEEEESCCCHHHHHHHHHHHHH
T ss_pred             ECCC--CHHHHHHcCCcc--cCEEEE-C---CEEEEeeCCCCHHHHHHHHHHHhh
Confidence            9986  577889999974  899988 3   333334577889999999998764

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=98.23  E-value=1.5e-05  Score=51.15  Aligned_cols=96  Identities=9%  Similarity=0.066  Sum_probs=68.3

Q ss_pred             EecCC-Cchhhhhc--CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686           44 ITYSR-ETTPLILN--SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI  117 (155)
Q Consensus        44 ~e~~~-~~~~~i~~--~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v  117 (155)
                      .+++. +++.....  .+++.++.|....  .-.. ...+.++++++. ++.|+.+|.+.  ...+.+.+|+..  .|++
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~--~~~~~~~~~v~~--~Pt~   76 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQ--NEEAAAKYSVTA--MPTF   76 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTT--CHHHHHHTTCCS--SSEE
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEeccC--CHHHHHHcCCcc--ccEE
Confidence            45555 66777776  4556666676553  2244 667888998886 69999999986  567889999864  8999


Q ss_pred             EEEecCCCe-eecCCCCCCHHHHHHHHHHHH
Q 031686          118 AVASIRKRK-KYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       118 ~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      ++.+  .|+ .....| .+.+.|.+|+++++
T Consensus        77 ~~~~--~g~~~~~~~G-~~~~~l~~~l~~~l  104 (104)
T 2vim_A           77 VFIK--DGKEVDRFSG-ANETKLRETITRHK  104 (104)
T ss_dssp             EEEE--TTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             EEEe--CCcEEEEEeC-CCHHHHHHHHHhhC
Confidence            8886  243 233445 68999999998763

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=98.22  E-value=1.3e-05  Score=53.69  Aligned_cols=101  Identities=11%  Similarity=0.090  Sum_probs=74.6

Q ss_pred             CCCeEecCC-CchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           40 IPPMITYSR-ETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        40 ~P~v~e~~~-~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      .+.+.+++. +++....+.+++.++.|....  .-.. ...+.++++++.++ +.|+.+|.+.  ...+.+.+|+..  +
T Consensus        14 ~~~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~--~~~~~~~~~v~~--~   89 (121)
T 2j23_A           14 RGSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE--QSQIAQEVGIRA--M   89 (121)
T ss_dssp             CCCEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTT--CHHHHHHHTCCS--S
T ss_pred             CcceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcC--CHHHHHHcCCCc--c
Confidence            345666765 778888877777777776553  2344 67788899988876 9999999986  567889999874  8


Q ss_pred             ceEEEEecCCCe-eecCCCCCCHHHHHHHHHHHH
Q 031686          115 RVIAVASIRKRK-KYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       115 P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      |+++++.  .|+ .+.+.|. +.+.|.+|+++.+
T Consensus        90 Pt~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           90 PTFVFFK--NGQKIDTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             SEEEEEE--TTEEEEEEESS-CHHHHHHHHHHHT
T ss_pred             cEEEEEE--CCeEEeeEcCC-CHHHHHHHHHHhh
Confidence            9998885  243 3344555 8999999999875

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=98.22  E-value=2.1e-05  Score=62.04  Aligned_cols=117  Identities=14%  Similarity=0.122  Sum_probs=86.2

Q ss_pred             CCcCHHHHHHHHHhCC------------------CCCeEecCCCchhhhh-cCCCceEEEEeecC--ChhH-HHHHHHHH
Q 031686           24 VSFTISVIDDFISLNK------------------IPPMITYSRETTPLIL-NSPLKLLWLFAAVH--DSEA-KSIFQETA   81 (155)
Q Consensus        24 g~~~~~~l~~fI~~~~------------------~P~v~e~~~~~~~~i~-~~~~~~v~lf~~~~--~~~~-~~~~~~vA   81 (155)
                      |.++.++|.+|++...                  -..|..++.+++..+. ..+++.++.|...-  .-.. ...+.++|
T Consensus       214 ~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la  293 (361)
T 3uem_A          214 EELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLG  293 (361)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTTSSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHhcCCCcccccCCCCCcccccCCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHH
Confidence            7899999999998731                  1237788888988876 35555577776553  2344 67899999


Q ss_pred             HhhcCc--eEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCC-eeecCCCCCCHHHHHHHHHHH
Q 031686           82 RAFKGK--LLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKR-KKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus        82 ~~~~~~--i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~-~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      ++++++  +.|+.+|.+..  .  .+.+|+.+  +|++.++...++ ....+.|..+.+.|.+||++-
T Consensus       294 ~~~~~~~~v~~~~vd~~~~--~--~~~~~v~~--~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~  355 (361)
T 3uem_A          294 ETYKDHENIVIAKMDSTAN--E--VEAVKVHS--FPTLKFFPASADRTVIDYNGERTLDGFKKFLESG  355 (361)
T ss_dssp             HHTTTCSSEEEEEEETTTC--B--CSSCCCCS--SSEEEEECSSSSCCCEECCSCSSHHHHHHHHTTT
T ss_pred             HHhccCCcEEEEEEECCcc--c--hhhcCCcc--cCeEEEEECCCCcceeEecCCCCHHHHHHHHHhc
Confidence            999875  99999999852  2  56778864  899999964323 235567889999999999754

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.21  E-value=5.5e-06  Score=56.68  Aligned_cols=102  Identities=11%  Similarity=0.080  Sum_probs=73.9

Q ss_pred             HHhCCCCCeEe--cC-CCchhhhhcCCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCC
Q 031686           35 ISLNKIPPMIT--YS-RETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTC  111 (155)
Q Consensus        35 I~~~~~P~v~e--~~-~~~~~~i~~~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~  111 (155)
                      +++.+.|....  ++ .+.++.+.+.....++.|+...+.+..+.|.++|+.+ +++.|+.++..     .+++.+|++ 
T Consensus        13 m~kq~gP~~~~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~~~~F~~~A~~~-~d~~F~~t~~~-----~v~~~~~v~-   85 (124)
T 2l4c_A           13 SSDGPGAAQEPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPAVPILHSMVQKF-PGVSFGISTDS-----EVLTHYNIT-   85 (124)
T ss_dssp             SCCCSCCSCCCEECCSHHHHHHHHHTSSEEEEEECSCTTSTHHHHHHHHHHHC-TTSEEEEECCH-----HHHHHTTCC-
T ss_pred             HHhccCCCCcceEcCCHHHHHHHHhcCCCEEEEEECCCCChhHHHHHHHHHhC-CCceEEEEChH-----HHHHHcCCC-
Confidence            34667788755  64 4567777776655588888664433377899999999 88999988543     578889987 


Q ss_pred             CCcceEEEEecCCCeeecCCC----CCCHHHHHHHHHH
Q 031686          112 YTSRVIAVASIRKRKKYVLNG----ELTLSNVKSFALD  145 (155)
Q Consensus       112 ~~~P~v~i~~~~~~~kY~~~~----~~t~~~I~~Fi~~  145 (155)
                        .|+++++..-...+-.+++    +++.+.|.+||+.
T Consensus        86 --~~~vvlfkkfde~~~~~~g~~~~~~~~~~L~~FI~~  121 (124)
T 2l4c_A           86 --GNTICLFRLVDNEQLNLEDEDIESIDATKLSRFIEI  121 (124)
T ss_dssp             --SSCEEEEETTTTEEEEECHHHHTTCCHHHHHHHHHH
T ss_pred             --CCeEEEEEcCCCCceeecCcccCCCCHHHHHHHHHH
Confidence              6889999863323333454    6899999999985

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.20  E-value=1.2e-05  Score=54.17  Aligned_cols=109  Identities=16%  Similarity=0.179  Sum_probs=78.1

Q ss_pred             CCCeEecCCCchhhhhcC-CCceEEEEeecC-C-hhH-HHHHHHHHHhhc--CceEEEEEeCCCcchhhhhhhhCCCCCC
Q 031686           40 IPPMITYSRETTPLILNS-PLKLLWLFAAVH-D-SEA-KSIFQETARAFK--GKLLFVYSQIYPKLKGQIFDYFGVTCYT  113 (155)
Q Consensus        40 ~P~v~e~~~~~~~~i~~~-~~~~v~lf~~~~-~-~~~-~~~~~~vA~~~~--~~i~F~~vd~~~~~~~~~~~~~gl~~~~  113 (155)
                      -+.|.+++.+++...... +.+.++.|.... . -.. ...|.++|++++  +++.|+.+|.+.  ...+.+.||+..  
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~--   81 (133)
T 2dj3_A            6 SGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATA--NDITNDQYKVEG--   81 (133)
T ss_dssp             SCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTT--SCCCCSSCCCSS--
T ss_pred             CCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCc--CHHHHhhcCCCc--
Confidence            456888999888876654 555566776543 2 244 667899999987  569999999885  456667788864  


Q ss_pred             cceEEEEecCCC-eeecCC-CCCCHHHHHHHHHHHHcCCCc
Q 031686          114 SRVIAVASIRKR-KKYVLN-GELTLSNVKSFALDFLGDKLR  152 (155)
Q Consensus       114 ~P~v~i~~~~~~-~kY~~~-~~~t~~~I~~Fi~~f~~Gkl~  152 (155)
                      +|++++++.... ....+. +..+.+.|.+||+..+.....
T Consensus        82 ~Pt~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~~~  122 (133)
T 2dj3_A           82 FPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSR  122 (133)
T ss_dssp             SSEEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSCSS
T ss_pred             CCEEEEEeCCCcccceEecCCCcCHHHHHHHHHHhcccccC
Confidence            899999875321 122345 568999999999998876543

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.19  E-value=1.4e-05  Score=51.47  Aligned_cols=98  Identities=9%  Similarity=0.113  Sum_probs=69.2

Q ss_pred             eEecC-CCchhhhhc--CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           43 MITYS-RETTPLILN--SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        43 v~e~~-~~~~~~i~~--~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      +.+++ .+++.....  .+++.++.|....  .-.. ...+.++|+++.+ +.|+.+|.+.  ...+.+.+|+..  .|+
T Consensus         2 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~--~~~~~~~~~v~~--~Pt   76 (105)
T 3m9j_A            2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDD--CQDVASESEVKS--MPT   76 (105)
T ss_dssp             CEECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTT--CHHHHHHTTCCB--SSE
T ss_pred             eEEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhh--hHHHHHHcCCCc--CcE
Confidence            34453 456666666  5556676776553  2344 6788899999876 9999999986  578889999974  899


Q ss_pred             EEEEecCCCeeecCCCCCCHHHHHHHHHHHH
Q 031686          117 IAVASIRKRKKYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       117 v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      ++++.. +.....+.|. +.+.|.+|+++.+
T Consensus        77 ~~~~~~-g~~~~~~~g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           77 FQFFKK-GQKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             EEEEET-TEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             EEEEEC-CeEEEEEeCC-CHHHHHHHHHHhC
Confidence            999853 2223334556 8999999998753

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=98.19  E-value=9.7e-06  Score=54.71  Aligned_cols=101  Identities=7%  Similarity=0.074  Sum_probs=71.6

Q ss_pred             CCCeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           40 IPPMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        40 ~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      .|.+...+.+........+++.++.|...-  .-.. ...+.++++++++++.|+.+|.+.  ...+.+.||+..  +|+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~--~Pt   99 (128)
T 3ul3_B           24 VPRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDK--NESLARKFSVKS--LPT   99 (128)
T ss_dssp             --CCCCCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGG--CHHHHHHTTCCS--SSE
T ss_pred             CCccccCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCC--cCE
Confidence            444544555555555566666677776553  2244 678899999998889999999986  578889999974  899


Q ss_pred             EEEEecCCCeeecCCCCCCHHHHHHHHHH
Q 031686          117 IAVASIRKRKKYVLNGELTLSNVKSFALD  145 (155)
Q Consensus       117 v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~  145 (155)
                      +++++ ++.....+.|..+.++|.+|+++
T Consensus       100 ~~~~~-~G~~~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B          100 IILLK-NKTMLARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             EEEEE-TTEEEEEESSCCCHHHHHHHHTT
T ss_pred             EEEEE-CCEEEEEecCCCCHHHHHHHHHh
Confidence            99985 22223445677899999999864

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=98.18  E-value=1.8e-05  Score=52.62  Aligned_cols=102  Identities=13%  Similarity=0.118  Sum_probs=74.1

Q ss_pred             CCCeEecCCCchhhhhcC----CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCC
Q 031686           40 IPPMITYSRETTPLILNS----PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCY  112 (155)
Q Consensus        40 ~P~v~e~~~~~~~~i~~~----~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~  112 (155)
                      .|.+...+.+++......    +++.++.|....  .-.. ...+.++++++.+ +.|+.+|.+.  ...+.+.||+.. 
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~--~~~~~~~~~v~~-   87 (122)
T 2vlu_A           12 AEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDE--LKPIAEQFSVEA-   87 (122)
T ss_dssp             CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT--CHHHHHHTTCCS-
T ss_pred             CcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCC--CHHHHHHcCCCc-
Confidence            456677777777776653    556677776543  1234 6678899999887 9999999986  567889999874 


Q ss_pred             CcceEEEEecCCCe-eecCCCCCCHHHHHHHHHHHHcC
Q 031686          113 TSRVIAVASIRKRK-KYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus       113 ~~P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                       +|++++..  .|+ .+.+.|.. .+.|.+|++..+.+
T Consensus        88 -~Pt~~~~~--~G~~~~~~~G~~-~~~l~~~l~~~l~~  121 (122)
T 2vlu_A           88 -MPTFLFMK--EGDVKDRVVGAI-KEELTAKVGLHAAA  121 (122)
T ss_dssp             -SSEEEEEE--TTEEEEEEESSC-HHHHHHHHHHHHSC
T ss_pred             -ccEEEEEe--CCEEEEEEeCcC-HHHHHHHHHHHhcc
Confidence             89988874  343 33445655 99999999998764

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.18  E-value=1.3e-05  Score=59.08  Aligned_cols=123  Identities=13%  Similarity=-0.006  Sum_probs=89.2

Q ss_pred             EeccCCcCHHHHHHHHHhCCC--CCeEecCCCchhhhhcCCCce-EEEEeecC--ChhH-HHHHHHHHHhhc----CceE
Q 031686           20 IFSDVSFTISVIDDFISLNKI--PPMITYSRETTPLILNSPLKL-LWLFAAVH--DSEA-KSIFQETARAFK----GKLL   89 (155)
Q Consensus        20 ~~y~g~~~~~~l~~fI~~~~~--P~v~e~~~~~~~~i~~~~~~~-v~lf~~~~--~~~~-~~~~~~vA~~~~----~~i~   89 (155)
                      ..|.|..+.+++.+|+.....  .....++.+++..+...+.+. ++.|...-  .-.. ...+.++|+++.    +++.
T Consensus        93 ~~~~G~~~~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~  172 (226)
T 1a8l_A           93 VRYFGLPAGHEFAAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKIL  172 (226)
T ss_dssp             EEEESCCCTTHHHHHHHHHHHHHHTCCCCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred             EEEeccCcHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEE
Confidence            456777778888998876321  124567777777776677777 77776553  2244 677888999887    6899


Q ss_pred             EEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHH
Q 031686           90 FVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus        90 F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      |+.+|.+.  +..+.+.||+..  +|+++++.. +.....+.|..+.+.|.+|++..+
T Consensus       173 ~~~vd~~~--~~~l~~~~~v~~--~Pt~~~~~~-G~~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          173 GDMVEAIE--YPEWADQYNVMA--VPKIVIQVN-GEDRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             EEEEEGGG--CHHHHHHTTCCS--SCEEEEEET-TEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEEccc--CHHHHHhCCCcc--cCeEEEEeC-CceeEEEcCCCCHHHHHHHHHHhh
Confidence            99999986  567889999974  899988762 222334567788999999998875

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=98.17  E-value=4.2e-05  Score=50.56  Aligned_cols=102  Identities=14%  Similarity=0.155  Sum_probs=74.6

Q ss_pred             CCeEecCCCchhhhh-cCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC-----ceEEEEEeCCCcchhhhhhhhCCCC
Q 031686           41 PPMITYSRETTPLIL-NSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG-----KLLFVYSQIYPKLKGQIFDYFGVTC  111 (155)
Q Consensus        41 P~v~e~~~~~~~~i~-~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~-----~i~F~~vd~~~~~~~~~~~~~gl~~  111 (155)
                      +.|.+++.+++.... ..+.+.++.|...-  .-.. ...+.++|+++++     .+.|+.+|.+..   .+.+  ++. 
T Consensus         7 ~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~---~~~~--~v~-   80 (121)
T 2djj_A            7 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN---DVPD--EIQ-   80 (121)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS---CCSS--CCS-
T ss_pred             CCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccc---cccc--ccC-
Confidence            457889999988764 55666677776553  2344 6788999999987     799999999852   2334  664 


Q ss_pred             CCcceEEEEecCCCe--eecCCCCCCHHHHHHHHHHHHcCC
Q 031686          112 YTSRVIAVASIRKRK--KYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       112 ~~~P~v~i~~~~~~~--kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                       .+|++++++.. ++  ...+.|..+.+.|.+|+++....+
T Consensus        81 -~~Pt~~~~~~~-~~~~~~~~~G~~~~~~l~~~i~~~~~~~  119 (121)
T 2djj_A           81 -GFPTIKLYPAG-AKGQPVTYSGSRTVEDLIKFIAENGKYK  119 (121)
T ss_dssp             -SSSEEEEECSS-CTTSCCCCCCCSCHHHHHHHHHHTSSSC
T ss_pred             -cCCeEEEEeCc-CCCCceEecCCCCHHHHHHHHHhccCcC
Confidence             48999999853 22  445567889999999999876543

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=98.15  E-value=9.8e-06  Score=52.66  Aligned_cols=94  Identities=9%  Similarity=0.016  Sum_probs=59.8

Q ss_pred             CCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecC
Q 031686           47 SRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIR  123 (155)
Q Consensus        47 ~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~  123 (155)
                      |.+++......+.+.++.|...-  .-.. ...+.++|+++ +++.|+.+|.+.  ...+.+.||+..  +|++++++  
T Consensus         7 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~-~~~~~~~vd~~~--~~~l~~~~~v~~--~Pt~~~~~--   79 (105)
T 4euy_A            7 TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENY-NYVEKIEILLQD--MQEIAGRYAVFT--GPTVLLFY--   79 (105)
T ss_dssp             ---CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTC-TTEEEEEEEECC--C---------CC--CCEEEEEE--
T ss_pred             CHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHc-CCceEEEEECCC--CHHHHHhcCCCC--CCEEEEEe--
Confidence            34566666666666677776653  2244 67888999988 479999999986  567888999874  89999986  


Q ss_pred             CCe-eecCCCCCCHHHHHHHHHHHH
Q 031686          124 KRK-KYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       124 ~~~-kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      .|+ ...+.|..+.+.|.++++.++
T Consensus        80 ~G~~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           80 NGKEILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             TTEEEEEEESSCCHHHHHHHHHTTC
T ss_pred             CCeEEEEEeCCcCHHHHHHHHHHhh
Confidence            243 334456779999999998764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.14  E-value=3.2e-05  Score=59.07  Aligned_cols=103  Identities=11%  Similarity=0.209  Sum_probs=79.2

Q ss_pred             CCCCeEecCCCchhhhhcC--CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCC
Q 031686           39 KIPPMITYSRETTPLILNS--PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYT  113 (155)
Q Consensus        39 ~~P~v~e~~~~~~~~i~~~--~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~  113 (155)
                      ..|.|.++|.+++..+...  ++++++.|...-  .-.. ...+.++++++.+++.|+.+|.+.  ...+.+.||+..  
T Consensus         5 ~~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~--   80 (287)
T 3qou_A            5 SVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDA--EQMIAAQFGLRA--   80 (287)
T ss_dssp             -CTTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTT--CHHHHHTTTCCS--
T ss_pred             CCCccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCcc--CHHHHHHcCCCC--
Confidence            3577999999999998864  566677776552  2344 678899999999899999999986  578889999974  


Q ss_pred             cceEEEEecCCCe-eecCCCCCCHHHHHHHHHHHH
Q 031686          114 SRVIAVASIRKRK-KYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       114 ~P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      +|++.++.  .|+ ...+.|..+.+.+.+|+...+
T Consensus        81 ~Pt~~~~~--~G~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           81 IPTVYLFQ--NGQPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             SSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             CCeEEEEE--CCEEEEEeeCCCCHHHHHHHHHHHc
Confidence            89999885  243 223456778999999998875

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=98.11  E-value=4.8e-05  Score=50.19  Aligned_cols=95  Identities=12%  Similarity=0.202  Sum_probs=69.7

Q ss_pred             eEecCC-Cchhhhhc--CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           43 MITYSR-ETTPLILN--SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        43 v~e~~~-~~~~~i~~--~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      +.+++. +++.....  .+++.++.|....  .-.. ...+.++|+++  ++.|+.+|.+.  ...+.+.+|+..  +|+
T Consensus        15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~~--~~~~~~~~~v~~--~Pt   88 (117)
T 2xc2_A           15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDK--LEETARKYNISA--MPT   88 (117)
T ss_dssp             EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETTT--SHHHHHHTTCCS--SSE
T ss_pred             eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECCc--cHHHHHHcCCCc--cce
Confidence            778887 88887777  5666676676553  2244 66788888888  79999999986  567889999874  899


Q ss_pred             EEEEecCCCe-eecCCCCCCHHHHHHHHHHH
Q 031686          117 IAVASIRKRK-KYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       117 v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      +++..  .|+ ...+.| .+.+.|.++++++
T Consensus        89 ~~~~~--~G~~~~~~~G-~~~~~l~~~l~~~  116 (117)
T 2xc2_A           89 FIAIK--NGEKVGDVVG-ASIAKVEDMIKKF  116 (117)
T ss_dssp             EEEEE--TTEEEEEEES-SCHHHHHHHHHHH
T ss_pred             EEEEe--CCcEEEEEeC-CCHHHHHHHHHHh
Confidence            88875  243 233345 6889999999875

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=98.10  E-value=2.3e-05  Score=59.27  Aligned_cols=103  Identities=15%  Similarity=0.151  Sum_probs=73.0

Q ss_pred             hCCCCCeEecC-CCchhhhhcCCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcc
Q 031686           37 LNKIPPMITYS-RETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSR  115 (155)
Q Consensus        37 ~~~~P~v~e~~-~~~~~~i~~~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P  115 (155)
                      .++.|.+.+++ .+.+..+.+.....++.|+...+.+..+.|.++|..+|+++.|+.+..     ..+++.++++   .|
T Consensus         2 ~~~gP~v~~l~s~~~~~~~l~~~~v~vvgff~~~~~~~~~~f~~~A~~lr~~~~F~~~~~-----~~v~~~~~~~---~p   73 (252)
T 2h8l_A            2 PLGSPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNV-----ESLVNEYDDN---GE   73 (252)
T ss_dssp             ----CCEEECCSHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHTTTTSCEEEECC-----HHHHHHHCSS---SE
T ss_pred             CcCCCCceeecCHHHHHHHhhcCCeEEEEEECCCCChHHHHHHHHHHhcccCcEEEEECh-----HHHHHHhCCC---CC
Confidence            35689999996 466777776665557777765432336799999999999999988743     3578888987   39


Q ss_pred             eEEEEecC------CCeeecC-CCCCCHHHHHHHHHHHH
Q 031686          116 VIAVASIR------KRKKYVL-NGELTLSNVKSFALDFL  147 (155)
Q Consensus       116 ~v~i~~~~------~~~kY~~-~~~~t~~~I~~Fi~~f~  147 (155)
                      ++++....      ......+ +|+++.+.|.+||+.-.
T Consensus        74 ~i~~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~  112 (252)
T 2h8l_A           74 GIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENI  112 (252)
T ss_dssp             EEEEECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHS
T ss_pred             cEEEEcchhhcccccccccccCCCCcCHHHHHHHHHhcc
Confidence            99888742      1223345 77899999999999854

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=98.09  E-value=4.8e-05  Score=52.95  Aligned_cols=105  Identities=15%  Similarity=0.135  Sum_probs=74.8

Q ss_pred             HHhCCCCCeEecCCCchhhhhcCCC-ceEEEEeecC----ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhC
Q 031686           35 ISLNKIPPMITYSRETTPLILNSPL-KLLWLFAAVH----DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFG  108 (155)
Q Consensus        35 I~~~~~P~v~e~~~~~~~~i~~~~~-~~v~lf~~~~----~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~g  108 (155)
                      +.++.+|   ++|.+++........ |.++.|...-    .-.. .-.+.++|++|.+++.|+.+|.++  +..+...||
T Consensus        12 ~~~~g~~---~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe--~~~la~~yg   86 (137)
T 2qsi_A           12 ARPNAPT---LVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEA--ERGLMARFG   86 (137)
T ss_dssp             -----CE---EECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGG--HHHHHHHHT
T ss_pred             HHhcCCc---ccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCC--CHHHHHHcC
Confidence            3444444   678888887665554 6666665432    1233 557889999999999999999996  788999999


Q ss_pred             CCCCCcceEEEEecCCCe-eecCCCCCCHHHHHHHHHHHHc
Q 031686          109 VTCYTSRVIAVASIRKRK-KYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       109 l~~~~~P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +..  +|+++++..  |+ .-.+.|-.+.+.|.++|+.+++
T Consensus        87 V~s--iPTlilFkd--G~~v~~~vG~~~k~~l~~~l~~~l~  123 (137)
T 2qsi_A           87 VAV--CPSLAVVQP--ERTLGVIAKIQDWSSYLAQIGAMLA  123 (137)
T ss_dssp             CCS--SSEEEEEEC--CEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred             Ccc--CCEEEEEEC--CEEEEEEeCCCCHHHHHHHHHHHhc
Confidence            974  899999973  42 2234466788899999998773

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=98.08  E-value=2.3e-05  Score=51.45  Aligned_cols=98  Identities=14%  Similarity=0.176  Sum_probs=71.7

Q ss_pred             CeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           42 PMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        42 ~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      .....+.+++......+++.++.|....  .-.. ...+.++++++. ++.|+.+|.+.  ...+.+.+|+..  +|+++
T Consensus        10 ~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~--~~~~~~~~~v~~--~Pt~~   84 (112)
T 1syr_A           10 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDE--VSEVTEKENITS--MPTFK   84 (112)
T ss_dssp             CEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTT--THHHHHHTTCCS--SSEEE
T ss_pred             EEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCC--CHHHHHHcCCCc--ccEEE
Confidence            3455677888888877766777776553  2244 677888998886 49999999986  567888999864  89988


Q ss_pred             EEecCCCe-eecCCCCCCHHHHHHHHHHHH
Q 031686          119 VASIRKRK-KYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       119 i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      +..  .|+ .+.+.|. +.+.|.+|+++++
T Consensus        85 ~~~--~G~~~~~~~G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           85 VYK--NGSSVDTLLGA-NDSALKQLIEKYA  111 (112)
T ss_dssp             EEE--TTEEEEEEESC-CHHHHHHHHHTTC
T ss_pred             EEE--CCcEEEEEeCC-CHHHHHHHHHHhh
Confidence            875  243 3344566 8999999998754

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=98.07  E-value=0.00015  Score=47.22  Aligned_cols=103  Identities=8%  Similarity=0.093  Sum_probs=71.9

Q ss_pred             CCCeEecCCCchhhhhcC--CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           40 IPPMITYSRETTPLILNS--PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        40 ~P~v~e~~~~~~~~i~~~--~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      ...|.+++.+++......  +++.++.|....  .-.. ...+.++++++.+ +.|+.+|.+.. ...+.+.||+..  +
T Consensus         4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~-~~~~~~~~~v~~--~   79 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD-VIFLKLDCNQE-NKTLAKELGIRV--V   79 (111)
T ss_dssp             TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSST-THHHHHHHCCSB--S
T ss_pred             cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC-eEEEEEecCcc-hHHHHHHcCCCe--e
Confidence            345888999999887763  556666676543  2244 6678889998875 99999998731 567889999974  8


Q ss_pred             ceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          115 RVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       115 P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      |++++.. ++.....+.|. +.+.|.++++++++
T Consensus        80 Pt~~~~~-~G~~~~~~~G~-~~~~l~~~l~~~~~  111 (111)
T 2pu9_C           80 PTFKILK-ENSVVGEVTGA-KYDKLLEAIQAARS  111 (111)
T ss_dssp             SEEEEES-SSSEEEEEESS-CHHHHHHHHHHHHC
T ss_pred             eEEEEEe-CCcEEEEEcCC-CHHHHHHHHHHhhC
Confidence            9976653 22222333443 58899999998753

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=98.07  E-value=1.6e-05  Score=60.18  Aligned_cols=102  Identities=12%  Similarity=0.137  Sum_probs=72.6

Q ss_pred             CCCCCeEecCC-CchhhhhcC-CCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcc
Q 031686           38 NKIPPMITYSR-ETTPLILNS-PLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSR  115 (155)
Q Consensus        38 ~~~P~v~e~~~-~~~~~i~~~-~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P  115 (155)
                      .+.|.|.+++. +.++.+.+. ....++.|+...+.+..+.|.++|..+|+++.|+.+...     .+++.+|++.   |
T Consensus         3 ~~gP~v~~l~s~~~~~~~~~~~~~v~vVgff~~~~~~~~~~F~~~A~~lr~~~~F~~t~~~-----~v~~~~~v~~---p   74 (250)
T 3ec3_A            3 LGSPPSKEILTLKQVQEFLKDGDDVVILGVFQGVGDPGYLQYQDAANTLREDYKFHHTFST-----EIAKFLKVSL---G   74 (250)
T ss_dssp             --CCSSEECCCHHHHHHHHHHCSSCEEEEECSCTTCHHHHHHHHHHHHHTTTCCEEEECCH-----HHHHHHTCCS---S
T ss_pred             CCCCCceecCCHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHHHHHHhhhcCcEEEEECcH-----HHHHHcCCCC---C
Confidence            46799999965 777777666 544577777654433378999999999999999987433     5677888864   9


Q ss_pred             eEEEEecC------CCeeecCC--CCCCHHHHHHHHHHHH
Q 031686          116 VIAVASIR------KRKKYVLN--GELTLSNVKSFALDFL  147 (155)
Q Consensus       116 ~v~i~~~~------~~~kY~~~--~~~t~~~I~~Fi~~f~  147 (155)
                      +|++..+.      ......++  ++++.+.|.+||+.-.
T Consensus        75 ~ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~  114 (250)
T 3ec3_A           75 KLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHA  114 (250)
T ss_dssp             EEEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHS
T ss_pred             eEEEEecchhhccccccceeccCCCCCCHHHHHHHHHHcC
Confidence            99988752      11122334  4689999999998753

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=98.06  E-value=3.6e-05  Score=50.45  Aligned_cols=94  Identities=7%  Similarity=0.028  Sum_probs=68.0

Q ss_pred             cCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686           46 YSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI  122 (155)
Q Consensus        46 ~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~  122 (155)
                      -+.+++......+++.++.|...-  .-.. ...+.++++++.+ +.|+.+|.+.  ...+.+.+|+..  +|++++++ 
T Consensus        12 ~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~vd~~~--~~~l~~~~~v~~--~Pt~~~~~-   85 (109)
T 3f3q_A           12 KTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDE--LGDVAQKNEVSA--MPTLLLFK-   85 (109)
T ss_dssp             CSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT--CHHHHHHTTCCS--SSEEEEEE-
T ss_pred             CCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC-CEEEEEECCC--CHHHHHHcCCCc--cCEEEEEE-
Confidence            345667777777777777776553  2244 6788889998865 8999999986  578889999974  89999987 


Q ss_pred             CCCeeecCCCCCCHHHHHHHHHHH
Q 031686          123 RKRKKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       123 ~~~~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      .+.....+.|. +++.|+++|+++
T Consensus        86 ~G~~~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           86 NGKEVAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             TTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             CCEEEEEEeCC-CHHHHHHHHHhh
Confidence            32222333444 789999999875

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=98.03  E-value=1.5e-05  Score=55.47  Aligned_cols=102  Identities=13%  Similarity=0.075  Sum_probs=66.2

Q ss_pred             CeEecCCCchhhhhcCCCceEEEEeecC----ChhH-HHHHHHHHHhhcCceE--EEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           42 PMITYSRETTPLILNSPLKLLWLFAAVH----DSEA-KSIFQETARAFKGKLL--FVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        42 ~v~e~~~~~~~~i~~~~~~~v~lf~~~~----~~~~-~~~~~~vA~~~~~~i~--F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      -+.+++.+++..........++.|....    .-.. ...+.++|+++ +++.  |+.+|.+.  ...+.+.||+..  +
T Consensus        18 ~~~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~--~~~la~~~~V~~--i   92 (142)
T 2es7_A           18 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQ--SEAIGDRFNVRR--F   92 (142)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHH--HHHHHHTTTCCS--S
T ss_pred             cCcccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCC--CHHHHHhcCCCc--C
Confidence            4678888999888776655555554221    1123 56788999999 8888  99999885  678889999974  8


Q ss_pred             ceEEEEecCCCe-eecCCCCCCHHHHHHHHHHHHcCC
Q 031686          115 RVIAVASIRKRK-KYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       115 P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      |+++++.  .|+ ...+.|..+.+.|.+|++..++..
T Consensus        93 PT~~~fk--~G~~v~~~~G~~~~~~l~~~i~~~l~~~  127 (142)
T 2es7_A           93 PATLVFT--DGKLRGALSGIHPWAELLTLMRSIVDTP  127 (142)
T ss_dssp             SEEEEES--CC----CEESCCCHHHHHHHHHHHHC--
T ss_pred             CeEEEEe--CCEEEEEEeCCCCHHHHHHHHHHHhccc
Confidence            9999984  343 334456778999999999988653

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=98.02  E-value=9.3e-05  Score=48.26  Aligned_cols=99  Identities=14%  Similarity=0.190  Sum_probs=69.9

Q ss_pred             eEecCC-CchhhhhcC---CCceEEEEeecC--ChhH-HHHHHHHHHhhc-CceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           43 MITYSR-ETTPLILNS---PLKLLWLFAAVH--DSEA-KSIFQETARAFK-GKLLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        43 v~e~~~-~~~~~i~~~---~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~-~~i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      |.+++. +++......   +++.++.|....  .-.. ...+.+++++++ .++.|+.+|.+.  ...+.+.+|+..  +
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~--~   77 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE--NSEISELFEISA--V   77 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTT--CHHHHHHTTCCS--S
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEeccc--CHHHHHHcCCCc--c
Confidence            566776 778877765   556666676553  2344 677888998853 459999999986  567888999864  8


Q ss_pred             ceEEEEecCCCe-eecCCCCCCHHHHHHHHHHHHc
Q 031686          115 RVIAVASIRKRK-KYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       115 P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      |+++++.  .|+ ...+.|. +.+.|.+++++++.
T Consensus        78 Pt~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~~~  109 (112)
T 3d6i_A           78 PYFIIIH--KGTILKELSGA-DPKEYVSLLEDCKN  109 (112)
T ss_dssp             SEEEEEE--TTEEEEEECSC-CHHHHHHHHHHHHH
T ss_pred             cEEEEEE--CCEEEEEecCC-CHHHHHHHHHHHHh
Confidence            9998885  343 2334444 55679999998764

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.00  E-value=9.2e-05  Score=56.09  Aligned_cols=106  Identities=11%  Similarity=0.065  Sum_probs=76.8

Q ss_pred             CCeEecCCCchhhhhcCCCceEEEEeecCChh-HHHHHHHHHHhhc--CceEEEEEeCCC---cchhhhhhhhCCCCCCc
Q 031686           41 PPMITYSRETTPLILNSPLKLLWLFAAVHDSE-AKSIFQETARAFK--GKLLFVYSQIYP---KLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~~~~~v~lf~~~~~~~-~~~~~~~vA~~~~--~~i~F~~vd~~~---~~~~~~~~~~gl~~~~~  114 (155)
                      ..|.+++.+++..+.....+.++.|+...++= ....|.++|+.++  +++.|+.+|.+.   ..+..+.+.||+.++.+
T Consensus         5 ~~v~~Lt~~nF~~~i~~~~~vlV~FyA~~pWCgl~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~~~~~   84 (240)
T 2qc7_A            5 KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESY   84 (240)
T ss_dssp             TTCEECCTTHHHHHGGGCSEEEEEECCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCCGGGC
T ss_pred             CCceECCHHHHHHHHcCCCCEEEEEeCCCCCCcchHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCCCCCC
Confidence            45788999999988877766677776511111 2457888999886  469999999542   12578899999974359


Q ss_pred             ceEEEEecCC-CeeecCCCCCCHHHHHHHHHHH
Q 031686          115 RVIAVASIRK-RKKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       115 P~v~i~~~~~-~~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      |++.++.... .....+.|..+.++|.+||+..
T Consensus        85 PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~  117 (240)
T 2qc7_A           85 PVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQ  117 (240)
T ss_dssp             SEEEEEETTCSSCCEECCSCSCHHHHHHHHHHT
T ss_pred             CEEEEEeCCCcCcceeecCCCCHHHHHHHHHHh
Confidence            9999987422 1134556788999999999987

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=97.96  E-value=0.0002  Score=46.27  Aligned_cols=97  Identities=7%  Similarity=-0.008  Sum_probs=68.0

Q ss_pred             eEec-CCCchhhhh--cCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           43 MITY-SRETTPLIL--NSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        43 v~e~-~~~~~~~i~--~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      +.++ +.+++....  ..+++.++.|....  .-.. ...+.++|+++ +++.|+.+|.+.  ...+.+.||+..  +|+
T Consensus         3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~~vd~~~--~~~~~~~~~v~~--~Pt   77 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVHQ--CQGTAATNNISA--TPT   77 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHC-TTSEEEEEETTT--SHHHHHHTTCCS--SSE
T ss_pred             eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHC-CCcEEEEEECcc--CHHHHHhcCCCc--ccE
Confidence            4455 457787777  45666676776553  2244 67788899998 569999999986  567888999874  899


Q ss_pred             EEEEecCCCe-eecCCCCCCHHHHHHHHHHHH
Q 031686          117 IAVASIRKRK-KYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       117 v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      ++++..  |+ ...+.| .+.++|.+|+++.+
T Consensus        78 ~~~~~~--G~~~~~~~G-~~~~~l~~~l~~~l  106 (107)
T 1gh2_A           78 FQFFRN--KVRIDQYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             EEEEET--TEEEEEEES-SCHHHHHHHHHHHH
T ss_pred             EEEEEC--CeEEEEEeC-CCHHHHHHHHHHhc
Confidence            988852  43 223344 45566999998875

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=97.94  E-value=8.7e-05  Score=57.65  Aligned_cols=108  Identities=16%  Similarity=0.170  Sum_probs=80.5

Q ss_pred             CCCCeEecCCCchhhhhc-CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           39 KIPPMITYSRETTPLILN-SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        39 ~~P~v~e~~~~~~~~i~~-~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      .-+.|.++|.+++..... .+.++++.|...-  .-.. ...+.++|+++.+.+.++.++.+......+++.||+..  +
T Consensus        15 ~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~--~   92 (298)
T 3ed3_A           15 SDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNG--F   92 (298)
T ss_dssp             SCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCB--S
T ss_pred             CCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCc--c
Confidence            346689999999998874 4556677776553  2244 67889999999988889999887433678889999974  8


Q ss_pred             ceEEEEecCC----------------CeeecCCCCCCHHHHHHHHHHHHc
Q 031686          115 RVIAVASIRK----------------RKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       115 P~v~i~~~~~----------------~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      |++.++....                .....+.|..+.+.|.+|+.+...
T Consensus        93 Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~  142 (298)
T 3ed3_A           93 PTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIR  142 (298)
T ss_dssp             SEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCC
T ss_pred             ceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcc
Confidence            9999988532                013455778899999999987653

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=97.94  E-value=3.2e-05  Score=54.02  Aligned_cols=101  Identities=14%  Similarity=0.069  Sum_probs=75.6

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecC----ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVH----DSEA-KSIFQETARAFKGK-LLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~----~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      +.++|.++++....++.++++.|.-.-    .-.. .-.+.++|++|.++ +.|+.+|.|+  +..+...||+..  +|+
T Consensus        19 ~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe--~~~lA~~ygV~s--IPT   94 (140)
T 2qgv_A           19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQ--SEAIGDRFGAFR--FPA   94 (140)
T ss_dssp             CEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHH--HHHHHHHHTCCS--SSE
T ss_pred             CccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCC--CHHHHHHcCCcc--CCE
Confidence            447788888877766667766554221    1123 56888999999999 9999999996  788999999974  899


Q ss_pred             EEEEecCCCe-eecCCCCCCHHHHHHHHHHHHcC
Q 031686          117 IAVASIRKRK-KYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus       117 v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                      ++++..  |+ .-...|-.+.+.|.++|+.+++.
T Consensus        95 lilFk~--G~~v~~~~G~~~k~~l~~~i~~~l~~  126 (140)
T 2qgv_A           95 TLVFTG--GNYRGVLNGIHPWAELINLMRGLVEP  126 (140)
T ss_dssp             EEEEET--TEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEEEC--CEEEEEEecCCCHHHHHHHHHHHhcC
Confidence            999974  43 22344667889999999998854

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=97.94  E-value=6.4e-05  Score=49.28  Aligned_cols=99  Identities=4%  Similarity=0.052  Sum_probs=68.6

Q ss_pred             EecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEE
Q 031686           44 ITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVA  120 (155)
Q Consensus        44 ~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~  120 (155)
                      ..++.+++ .....+.+.++.|....  .-.. ...+.++++++. ++.|+.+|.+.  ...+.+.+|+..  +|+++++
T Consensus         6 ~~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~--~~~l~~~~~v~~--~Pt~~~~   79 (110)
T 2l6c_A            6 DITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEA--RPELMKELGFER--VPTLVFI   79 (110)
T ss_dssp             BCGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEGGG--CHHHHHHTTCCS--SCEEEEE
T ss_pred             ecCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcCcC--CHHHHHHcCCcc--cCEEEEE
Confidence            45667788 44555656666776553  2344 677888888875 68899999875  567888999874  8999988


Q ss_pred             ecCCCeeecCCCCCCHHHHHHHHHHHHcC
Q 031686          121 SIRKRKKYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus       121 ~~~~~~kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                      . ++.....+.|..+++.|.++++.+..+
T Consensus        80 ~-~G~~v~~~~G~~~~~~l~~~~~~~~~~  107 (110)
T 2l6c_A           80 R-DGKVAKVFSGIMNPRELQALYASIHHH  107 (110)
T ss_dssp             E-SSSEEEEEESCCCHHHHHHHHHTC---
T ss_pred             E-CCEEEEEEcCCCCHHHHHHHHHHHhhh
Confidence            4 222233445778999999999988654

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=97.93  E-value=0.00011  Score=51.10  Aligned_cols=105  Identities=10%  Similarity=0.081  Sum_probs=73.7

Q ss_pred             CCCeEecC-CCchhhhhcC--CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCC
Q 031686           40 IPPMITYS-RETTPLILNS--PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYT  113 (155)
Q Consensus        40 ~P~v~e~~-~~~~~~i~~~--~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~  113 (155)
                      ...+.+++ .+++..+...  +.+.++.|....  .-.. ...+.++++++ +++.|+.+|.+.  ...+.+.||+..  
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~vd~~~--~~~l~~~~~v~~--   85 (153)
T 2wz9_A           11 VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL-PQVSFVKLEAEG--VPEVSEKYEISS--   85 (153)
T ss_dssp             -CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTT--SHHHHHHTTCCS--
T ss_pred             cCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHc-CCeEEEEEECCC--CHHHHHHcCCCC--
Confidence            34466665 4677777766  666677776553  2244 66788888887 469999999986  567889999874  


Q ss_pred             cceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCCC
Q 031686          114 SRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKL  151 (155)
Q Consensus       114 ~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gkl  151 (155)
                      +|++++++ ++.....+.| .+.+.|.+||++++...-
T Consensus        86 ~Pt~~~~~-~G~~~~~~~G-~~~~~l~~~i~~~l~~~~  121 (153)
T 2wz9_A           86 VPTFLFFK-NSQKIDRLDG-AHAPELTKKVQRHASSGS  121 (153)
T ss_dssp             SSEEEEEE-TTEEEEEEES-SCHHHHHHHHHHHSCTTS
T ss_pred             CCEEEEEE-CCEEEEEEeC-CCHHHHHHHHHHHhcccc
Confidence            89999998 3222223344 578899999999987643

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=97.92  E-value=0.00014  Score=59.99  Aligned_cols=104  Identities=9%  Similarity=0.046  Sum_probs=82.2

Q ss_pred             CCeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           41 PPMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      ..|.++|.+++......+.+.++.|...-  .-.. ...+.++|+++++. +.|+.+|.+.  ...+.+.||+.+  +|+
T Consensus        14 ~~v~~l~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~--~Pt   89 (504)
T 2b5e_A           14 SAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE--NQDLCMEHNIPG--FPS   89 (504)
T ss_dssp             SSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT--CHHHHHHTTCCS--SSE
T ss_pred             CCcEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCC--CHHHHHhcCCCc--CCE
Confidence            35888999999998887766677777653  2244 67899999999985 9999999986  578889999975  899


Q ss_pred             EEEEecCCCe--eecCCCCCCHHHHHHHHHHHHcC
Q 031686          117 IAVASIRKRK--KYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus       117 v~i~~~~~~~--kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                      +.++... ..  ...+.|..+.+.|.+|+.+....
T Consensus        90 ~~~~~~g-~~~~~~~~~G~~~~~~l~~~l~~~~~~  123 (504)
T 2b5e_A           90 LKIFKNS-DVNNSIDYEGPRTAEAIVQFMIKQSQP  123 (504)
T ss_dssp             EEEEETT-CTTCEEECCSCCSHHHHHHHHHHHTSC
T ss_pred             EEEEeCC-ccccceeecCCCCHHHHHHHHHHhcCC
Confidence            9998742 22  45567888999999999987754

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=97.92  E-value=5e-05  Score=49.42  Aligned_cols=98  Identities=13%  Similarity=0.134  Sum_probs=68.3

Q ss_pred             eEec-CCCchhhhhcC----CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           43 MITY-SRETTPLILNS----PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        43 v~e~-~~~~~~~i~~~----~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      +.++ +.+++......    +.+.++.|....  .-.. ...+.++++++. ++.|+.+|.+.  ...+.+.||+..  .
T Consensus         6 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~--~~~~~~~~~v~~--~   80 (113)
T 1ti3_A            6 VIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDE--LKAVAEEWNVEA--M   80 (113)
T ss_dssp             EEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTT--CHHHHHHHHCSS--T
T ss_pred             eeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEccc--cHHHHHhCCCCc--c
Confidence            4555 44666665553    555566666553  2244 667888998886 69999999986  567888999874  8


Q ss_pred             ceEEEEecCCCe-eecCCCCCCHHHHHHHHHHHHc
Q 031686          115 RVIAVASIRKRK-KYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       115 P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      |+++++.  .|+ .+.+.| .+.+.|.+++++++.
T Consensus        81 Pt~~~~~--~G~~~~~~~g-~~~~~l~~~l~~~~~  112 (113)
T 1ti3_A           81 PTFIFLK--DGKLVDKTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             TEEEEEE--TTEEEEEEEC-CCTTHHHHHHHHHHH
T ss_pred             cEEEEEe--CCEEEEEEec-CCHHHHHHHHHHhhc
Confidence            9998885  343 233345 688899999998874

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=97.92  E-value=0.00029  Score=53.62  Aligned_cols=106  Identities=12%  Similarity=0.043  Sum_probs=76.4

Q ss_pred             CCeEecCCCchhhhhcCCCceEEEEeecCChh-HHHHHHHHHHhhc---CceEEEEEeCCC---cchhhhhhhhCCCCCC
Q 031686           41 PPMITYSRETTPLILNSPLKLLWLFAAVHDSE-AKSIFQETARAFK---GKLLFVYSQIYP---KLKGQIFDYFGVTCYT  113 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~~~~~v~lf~~~~~~~-~~~~~~~vA~~~~---~~i~F~~vd~~~---~~~~~~~~~~gl~~~~  113 (155)
                      +.|.+++.+|+..+.....++++.|+....+= ....|.++|+++.   +++.|+.+|.+.   ..+..+.+.||+.++.
T Consensus        16 ~~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCgl~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V~~~~   95 (248)
T 2c0g_A           16 TGCVDLDELSFEKTVERFPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKN   95 (248)
T ss_dssp             TTCEECCTTTHHHHHTTSSEEEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTS
T ss_pred             CCcEECCHHHHHHHHhcCCCEEEEEECCCCCCccHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCCCcCC
Confidence            45788999999998877766676776211111 2457888898884   479999999764   1256788999998445


Q ss_pred             cceEEEEecCC-CeeecC--CCCCCHHHHHHHHHHHH
Q 031686          114 SRVIAVASIRK-RKKYVL--NGELTLSNVKSFALDFL  147 (155)
Q Consensus       114 ~P~v~i~~~~~-~~kY~~--~~~~t~~~I~~Fi~~f~  147 (155)
                      +|++.++. .. .....+  .|..+.++|.+||+...
T Consensus        96 ~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~  131 (248)
T 2c0g_A           96 FPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANT  131 (248)
T ss_dssp             CCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred             CCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhh
Confidence            99999987 32 112334  67889999999999874

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=97.91  E-value=9.4e-05  Score=49.69  Aligned_cols=99  Identities=14%  Similarity=0.122  Sum_probs=69.0

Q ss_pred             CCeEec-CCCchhhhhcC----CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCC
Q 031686           41 PPMITY-SRETTPLILNS----PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCY  112 (155)
Q Consensus        41 P~v~e~-~~~~~~~i~~~----~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~  112 (155)
                      ..|.++ +.+++......    +++.++.|....  .-.. ...+.++++++. ++.|+.+|.+.  ...+.+.||+.. 
T Consensus        16 ~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d~--~~~l~~~~~v~~-   91 (124)
T 1xfl_A           16 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDE--LKSVASDWAIQA-   91 (124)
T ss_dssp             SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTT--SHHHHHHTTCCS-
T ss_pred             CcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECcc--CHHHHHHcCCCc-
Confidence            345666 44666665553    555666666543  1234 667888999886 69999999986  567889999874 


Q ss_pred             CcceEEEEecCCCe-eecCCCCCCHHHHHHHHHHHH
Q 031686          113 TSRVIAVASIRKRK-KYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       113 ~~P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                       +|+++++.  .|+ .+.+.| .+.+.|.++|++++
T Consensus        92 -~Pt~~~~~--~G~~~~~~~G-~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           92 -MPTFMFLK--EGKILDKVVG-AKKDELQSTIAKHL  123 (124)
T ss_dssp             -SSEEEEEE--TTEEEEEEES-CCHHHHHHHHHHHC
T ss_pred             -cCEEEEEE--CCEEEEEEeC-CCHHHHHHHHHHhc
Confidence             89998874  343 333445 58999999998875

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=97.91  E-value=0.00011  Score=48.07  Aligned_cols=101  Identities=11%  Similarity=0.183  Sum_probs=70.7

Q ss_pred             CCeEec-CCCchhhhhcC----CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCC
Q 031686           41 PPMITY-SRETTPLILNS----PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCY  112 (155)
Q Consensus        41 P~v~e~-~~~~~~~i~~~----~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~  112 (155)
                      ..+.++ +.+++......    +++.++.|....  .-.. ...+.++++++. ++.|+.+|.+.  ...+.+.||+.. 
T Consensus         6 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~--~~~~~~~~~v~~-   81 (118)
T 2vm1_A            6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVDE--LKDVAEAYNVEA-   81 (118)
T ss_dssp             CCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTT--SHHHHHHTTCCS-
T ss_pred             CceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEccc--CHHHHHHcCCCc-
Confidence            345666 35666666654    556676676553  1244 677888999887 69999999986  567889999874 


Q ss_pred             CcceEEEEecCCCe-eecCCCCCCHHHHHHHHHHHHcC
Q 031686          113 TSRVIAVASIRKRK-KYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus       113 ~~P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                       .|+++++.  .|+ ...+.| .+.+.|.++++.+++.
T Consensus        82 -~Pt~~~~~--~g~~~~~~~g-~~~~~l~~~l~~~~~~  115 (118)
T 2vm1_A           82 -MPTFLFIK--DGEKVDSVVG-GRKDDIHTKIVALMGS  115 (118)
T ss_dssp             -BSEEEEEE--TTEEEEEEES-CCHHHHHHHHHHHHC-
T ss_pred             -CcEEEEEe--CCeEEEEecC-CCHHHHHHHHHHHhcc
Confidence             89998875  243 233345 5889999999998764

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=97.89  E-value=0.00012  Score=49.00  Aligned_cols=106  Identities=10%  Similarity=0.034  Sum_probs=71.3

Q ss_pred             eEecCCCchhhhhc----CCCceEEEEeecC-C-hhH-HHHH---HHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCC
Q 031686           43 MITYSRETTPLILN----SPLKLLWLFAAVH-D-SEA-KSIF---QETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCY  112 (155)
Q Consensus        43 v~e~~~~~~~~i~~----~~~~~v~lf~~~~-~-~~~-~~~~---~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~  112 (155)
                      ...++..++.....    .+++.++.|.... . -.. ...+   .++++.+...+.++.+|.+......+.+.||+.. 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~-   86 (130)
T 2kuc_A            8 GIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHA-   86 (130)
T ss_dssp             CCCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCS-
T ss_pred             CCCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCC-
Confidence            34456667766552    4556677776543 1 122 3344   4555555567889999887433567889999874 


Q ss_pred             CcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCC
Q 031686          113 TSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       113 ~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                       .|++++++.+....+.+.|..+.+.|.+|++..+.+.
T Consensus        87 -~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~~  123 (130)
T 2kuc_A           87 -YPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESE  123 (130)
T ss_dssp             -SCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSCC
T ss_pred             -CCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHhc
Confidence             8999999754333445567778999999999998764

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=97.09  E-value=1.9e-06  Score=55.43  Aligned_cols=99  Identities=17%  Similarity=0.142  Sum_probs=68.4

Q ss_pred             eEecCCCchhhh-hcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           43 MITYSRETTPLI-LNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        43 v~e~~~~~~~~i-~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      +.+++.+++... ...+++.++.|....  .-.. ...+.++++++.+++.|+.+|.+.  ...+.+.+|+..  .|+++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~--~Pt~~   78 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDE--NPNTAAQYGIRS--IPTLL   78 (106)
Confidence            456777777643 345556666666543  2234 667888899888889999999885  567788888864  89998


Q ss_pred             EEecCCCeeecCCCCCCHHHHHHHHHHH
Q 031686          119 VASIRKRKKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       119 i~~~~~~~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      ++. ++...+.+.|..+.+++.+|++..
T Consensus        79 ~~~-~g~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           79 LFK-NGQVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            874 222233445667888899988764

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=97.85  E-value=0.00033  Score=46.46  Aligned_cols=101  Identities=7%  Similarity=0.092  Sum_probs=71.4

Q ss_pred             CCCeEecCCCchhhhhc--CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           40 IPPMITYSRETTPLILN--SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        40 ~P~v~e~~~~~~~~i~~--~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      ...+.+++.+++.....  .+++.++.|....  .-.. ...+.++++++.+ +.|+.+|.+.. ...+.+.+|+..  .
T Consensus        17 ~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~-~~~~~~~~~v~~--~   92 (124)
T 1faa_A           17 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQE-NKTLAKELGIRV--V   92 (124)
T ss_dssp             TTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSST-THHHHHHHCCSS--S
T ss_pred             CCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC-CEEEEEecCcc-hHHHHHHcCCCe--e
Confidence            45688899999887766  4556676776543  2244 6678889998874 89999998732 567888999974  8


Q ss_pred             ceEEEEecCCCe-eecCCCCCCHHHHHHHHHHHH
Q 031686          115 RVIAVASIRKRK-KYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       115 P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      |++++..  .|+ ...+.|. ..+.|.++++.++
T Consensus        93 Pt~~~~~--~G~~~~~~~G~-~~~~l~~~i~~~~  123 (124)
T 1faa_A           93 PTFKILK--ENSVVGEVTGA-KYDKLLEAIQAAR  123 (124)
T ss_dssp             SEEEEEE--TTEEEEEEESS-CHHHHHHHHHHHT
T ss_pred             eEEEEEe--CCcEEEEEcCC-CHHHHHHHHHHhh
Confidence            9987765  243 2233443 4889999998875

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=97.79  E-value=8.5e-05  Score=49.18  Aligned_cols=95  Identities=13%  Similarity=0.097  Sum_probs=67.0

Q ss_pred             eEecCC-CchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           43 MITYSR-ETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        43 v~e~~~-~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      +.+++. +.+..+.+.+++.++.|....  .-.. ...+.++++++.+ +.|+.+|.+.  ...+.+.+|+..  +|+++
T Consensus        14 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~--~~~l~~~~~v~~--~Pt~~   88 (114)
T 2oe3_A           14 ITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDE--SPDIAKECEVTA--MPTFV   88 (114)
T ss_dssp             SCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTT--CHHHHHHTTCCS--BSEEE
T ss_pred             eeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCC--CHHHHHHCCCCc--ccEEE
Confidence            445543 556677777767777776543  2244 6678899999877 9999999986  567889999874  89998


Q ss_pred             EEecCCCe-eecCCCCCCHHHHHHHHHH
Q 031686          119 VASIRKRK-KYVLNGELTLSNVKSFALD  145 (155)
Q Consensus       119 i~~~~~~~-kY~~~~~~t~~~I~~Fi~~  145 (155)
                      +..  .|+ ...+.|.. .+.|.+++++
T Consensus        89 ~~~--~G~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           89 LGK--DGQLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             EEE--TTEEEEEEESSC-HHHHHHHHHT
T ss_pred             EEe--CCeEEEEEeCCC-HHHHHHHHHh
Confidence            874  243 23344545 8899999874

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=97.76  E-value=0.00028  Score=47.81  Aligned_cols=101  Identities=12%  Similarity=0.101  Sum_probs=71.1

Q ss_pred             eEec-CCCchhhhhc----CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           43 MITY-SRETTPLILN----SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        43 v~e~-~~~~~~~i~~----~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      +.++ +.+++.....    .+++.++.|....  .-.. ...+.++++++. ++.|+.+|.+.  ...+.+.||+..  +
T Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~v~~~~--~~~~~~~~~v~~--~  100 (139)
T 3d22_A           26 VHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDE--LSDFSASWEIKA--T  100 (139)
T ss_dssp             CEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTT--SHHHHHHTTCCE--E
T ss_pred             EEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEeCcc--cHHHHHHcCCCc--c
Confidence            4445 4567766553    3556666676543  2234 667888998884 69999999986  578889999974  8


Q ss_pred             ceEEEEecCCCe-eecCCCCCCHHHHHHHHHHHHcCCC
Q 031686          115 RVIAVASIRKRK-KYVLNGELTLSNVKSFALDFLGDKL  151 (155)
Q Consensus       115 P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~Gkl  151 (155)
                      |+++++.  .|+ .+.+.|. +.+.|.++++.++.+..
T Consensus       101 Pt~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~~~~~~  135 (139)
T 3d22_A          101 PTFFFLR--DGQQVDKLVGA-NKPELHKKITAILDSLP  135 (139)
T ss_dssp             SEEEEEE--TTEEEEEEESC-CHHHHHHHHHHHHHTSC
T ss_pred             cEEEEEc--CCeEEEEEeCC-CHHHHHHHHHHHhccCC
Confidence            9998874  243 3334455 88999999999988753

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=97.71  E-value=0.00039  Score=42.73  Aligned_cols=77  Identities=16%  Similarity=0.151  Sum_probs=57.3

Q ss_pred             eEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHH
Q 031686           61 LLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLS  137 (155)
Q Consensus        61 ~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~  137 (155)
                      .++.|....  .-.. ...+.++++++.+++.|+.+|.+.  ...+.+.+|+..  .|++++ +   |+. .+.|..+.+
T Consensus         5 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~--~Pt~~~-~---G~~-~~~G~~~~~   75 (85)
T 1fo5_A            5 KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVME--NPQKAMEYGIMA--VPTIVI-N---GDV-EFIGAPTKE   75 (85)
T ss_dssp             EEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSS--SCCTTTSTTTCC--SSEEEE-T---TEE-ECCSSSSSH
T ss_pred             EEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCC--CHHHHHHCCCcc--cCEEEE-C---CEE-eeecCCCHH
Confidence            355665543  2234 678889999998889999999986  457788888864  899988 3   443 455667899


Q ss_pred             HHHHHHHHH
Q 031686          138 NVKSFALDF  146 (155)
Q Consensus       138 ~I~~Fi~~f  146 (155)
                      .|.+++++.
T Consensus        76 ~l~~~l~~~   84 (85)
T 1fo5_A           76 ALVEAIKKR   84 (85)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999875

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=97.70  E-value=0.0003  Score=47.34  Aligned_cols=90  Identities=12%  Similarity=0.171  Sum_probs=62.9

Q ss_pred             cCCCceEEEEeecC--ChhH-HHHHH--HHHHhhcCceEEEEEeC---CCcchhhhhhhhCCCC-CCcceEEEEecCCCe
Q 031686           56 NSPLKLLWLFAAVH--DSEA-KSIFQ--ETARAFKGKLLFVYSQI---YPKLKGQIFDYFGVTC-YTSRVIAVASIRKRK  126 (155)
Q Consensus        56 ~~~~~~v~lf~~~~--~~~~-~~~~~--~vA~~~~~~i~F~~vd~---~~~~~~~~~~~~gl~~-~~~P~v~i~~~~~~~  126 (155)
                      ..++++++.|...-  .-.. ...|.  ++++++++++.|+.+|.   +.  ...+.+.||+.. ..+|++++++.++..
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~--~~~l~~~~~v~~~~~~Pt~~~~d~~G~~  104 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDR--NLELSQAYGDPIQDGIPAVVVVNSDGKV  104 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTS--SHHHHHHTTCGGGGCSSEEEEECTTSCE
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccc--hHHHHHHhCCccCCccceEEEECCCCCE
Confidence            34566666666442  1233 55677  88888877899999998   54  678889999921 248999999765433


Q ss_pred             eecCCC-------CCCHHHHHHHHHHHH
Q 031686          127 KYVLNG-------ELTLSNVKSFALDFL  147 (155)
Q Consensus       127 kY~~~~-------~~t~~~I~~Fi~~f~  147 (155)
                      .+...+       ..+.++|.+|++.+.
T Consensus       105 ~~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A          105 RYTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             EEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             EEEecCCcccccccCCHHHHHHHHHHhc
Confidence            444444       478999999999875

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=97.67  E-value=0.0011  Score=44.71  Aligned_cols=102  Identities=13%  Similarity=0.043  Sum_probs=67.9

Q ss_pred             cCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCC-------------------------
Q 031686           46 YSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYP-------------------------   97 (155)
Q Consensus        46 ~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~-------------------------   97 (155)
                      ++.+++..---.+++.++.|....  .-.. ...+.++++++.+++.|+.++.+.                         
T Consensus        17 ~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (148)
T 2b5x_A           17 LNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFV   96 (148)
T ss_dssp             ESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEE
T ss_pred             ccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEE
Confidence            344443332224556676776543  1234 677888888988778888887542                         


Q ss_pred             cchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcC
Q 031686           98 KLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus        98 ~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                      .....+.+.||+..  .|++++++.+....+...|..+.+.+.++|+..+++
T Consensus        97 d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~  146 (148)
T 2b5x_A           97 DSDHALTDAFENEY--VPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLAE  146 (148)
T ss_dssp             CSSCHHHHHTCCCC--SSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred             CCchhHHHHhCCCC--CCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence            11346778888864  899999986533344455667899999999998875

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=97.66  E-value=0.00029  Score=46.47  Aligned_cols=101  Identities=8%  Similarity=0.050  Sum_probs=68.6

Q ss_pred             CCeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCC--cchhhhhhhhCCCCCCcc
Q 031686           41 PPMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYP--KLKGQIFDYFGVTCYTSR  115 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~--~~~~~~~~~~gl~~~~~P  115 (155)
                      ..+..++.+++......+.+.++.|...-  .-.. ...+.++++++..++.++-++...  .....+.+.+|+..  .|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~--~P   89 (118)
T 1zma_A           12 KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPT--VP   89 (118)
T ss_dssp             TTSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCS--SC
T ss_pred             hhhhcCCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCC--CC
Confidence            44667788888887777777777776553  2234 667888898887677666544332  11346678899974  89


Q ss_pred             eEEEEecCCCeeecCCCCCCHHHHHHHHH
Q 031686          116 VIAVASIRKRKKYVLNGELTLSNVKSFAL  144 (155)
Q Consensus       116 ~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~  144 (155)
                      +++++.. +.....+.|..+.+.|.+|++
T Consensus        90 t~~~~~~-G~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           90 GFVHITD-GQINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             EEEEEET-TEEEEECCTTCCHHHHHHHHT
T ss_pred             eEEEEEC-CEEEEEecCCCCHHHHHHHhh
Confidence            9998862 222334567889999999985

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=97.66  E-value=0.00017  Score=49.02  Aligned_cols=99  Identities=12%  Similarity=0.057  Sum_probs=70.4

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeC---------CCcchhhhhhhhCCC
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQI---------YPKLKGQIFDYFGVT  110 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~---------~~~~~~~~~~~~gl~  110 (155)
                      +.+++.+++......  +.++.|...-  .-.. ...+.++++++.  +.|+.+|.         +.  ...+.+.||+.
T Consensus        18 v~~l~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~--~~~l~~~~~v~   91 (135)
T 3emx_A           18 LIYITPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSA--ARLEMNKAGVE   91 (135)
T ss_dssp             EEECCHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHH--HHHHHHHHTCC
T ss_pred             eeecCHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhh--hHHHHHHcCCc
Confidence            667777777777765  6676776553  2234 667888888886  88888888         43  66778899997


Q ss_pred             CCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCC
Q 031686          111 CYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       111 ~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      .  +|++++++ .+.....+.|..+.+.+.++++...++.
T Consensus        92 ~--~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~i~~~~~~~  128 (135)
T 3emx_A           92 G--TPTLVFYK-EGRIVDKLVGATPWSLKVEKAREIYGGE  128 (135)
T ss_dssp             S--SSEEEEEE-TTEEEEEEESCCCHHHHHHHHHHHC---
T ss_pred             e--eCeEEEEc-CCEEEEEEeCCCCHHHHHHHHHHHhCCC
Confidence            4  89999988 3223344567789999999999988663

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=97.64  E-value=0.00086  Score=47.70  Aligned_cols=101  Identities=7%  Similarity=0.010  Sum_probs=70.3

Q ss_pred             eEecCC-Cchhhhh--cCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           43 MITYSR-ETTPLIL--NSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        43 v~e~~~-~~~~~i~--~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      +.+++. +++++..  +++.++++=|...-  .=.. ...|.++|+++.+++.|+.+|.++  ++.+.+.||+.  ..|+
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe--~~e~a~~y~V~--siPT   98 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITE--VPDFNTMYELY--DPVS   98 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT--CCTTTTTTTCC--SSEE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCC--CHHHHHHcCCC--CCCE
Confidence            556654 5665444  35556666665442  1234 668999999999999999999997  78899999997  4899


Q ss_pred             EEEEecCCCeee----------cCCCCCC-HHHHHHHHHHHHcC
Q 031686          117 IAVASIRKRKKY----------VLNGELT-LSNVKSFALDFLGD  149 (155)
Q Consensus       117 v~i~~~~~~~kY----------~~~~~~t-~~~I~~Fi~~f~~G  149 (155)
                      +.++..  |+.-          .+.|-.+ .+.|.++|+.++.|
T Consensus        99 ~~fFk~--G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~  140 (160)
T 2av4_A           99 VMFFYR--NKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRG  140 (160)
T ss_dssp             EEEEET--TEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHH
T ss_pred             EEEEEC--CEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHH
Confidence            987763  3322          2334455 88888888777654

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=97.62  E-value=0.00033  Score=46.45  Aligned_cols=102  Identities=20%  Similarity=0.237  Sum_probs=68.0

Q ss_pred             CCeEec--CCCchh-hhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           41 PPMITY--SRETTP-LILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        41 P~v~e~--~~~~~~-~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      |.+..+  +.+++. .+.+.+.+.++.|....  .-.. ...+.++|+++ +++.|+.+|.+.  ...+.+.||+..  +
T Consensus         3 ~~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~--~~~~~~~~~i~~--~   77 (118)
T 2f51_A            3 DPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDK--NGNAADAYGVSS--I   77 (118)
T ss_dssp             CCSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTT--CHHHHHHTTCCS--S
T ss_pred             CcceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCC--CHHHHHhcCCCC--C
Confidence            345566  345665 44455666677776553  2244 66788899988 789999999986  567889999874  8


Q ss_pred             ceEEEEecC--CCe-eecCCCCCCHHHHHHHHHHHHc
Q 031686          115 RVIAVASIR--KRK-KYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       115 P~v~i~~~~--~~~-kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      |++++++..  .|+ ...+.| ...+.|++.+..+..
T Consensus        78 Pt~~~~~~~~~~G~~~~~~~G-~~~~~l~~~~~~~~~  113 (118)
T 2f51_A           78 PALFFVKKEGNEIKTLDQFVG-ADVSRIKADIEKFKH  113 (118)
T ss_dssp             SEEEEEEEETTEEEEEEEEES-CCHHHHHHHHHHHC-
T ss_pred             CEEEEEeCCCCcceEEEeecC-CCHHHHHHHHHHhhh
Confidence            999988741  132 222333 345679999887753

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=97.61  E-value=0.002  Score=47.98  Aligned_cols=107  Identities=11%  Similarity=0.087  Sum_probs=77.4

Q ss_pred             CeEecCCCchhhhhcC-CCceEEEEeecC--ChhH-HHHHHHHHHhhcC---ceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           42 PMITYSRETTPLILNS-PLKLLWLFAAVH--DSEA-KSIFQETARAFKG---KLLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        42 ~v~e~~~~~~~~i~~~-~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~---~i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      .|.+++.+++...... +.+.++.|...-  .-.. ...+.++|+++++   .+.|+.+|.+...+..+.+.||+..  +
T Consensus        13 ~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~--~   90 (244)
T 3q6o_A           13 PLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPG--F   90 (244)
T ss_dssp             SSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCS--S
T ss_pred             CceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCc--c
Confidence            4788999998875544 455566676543  2244 6789999999887   7999999985434678899999974  8


Q ss_pred             ceEEEEecCC----CeeecCCCCCCHHHHHHHHHHHHcCCC
Q 031686          115 RVIAVASIRK----RKKYVLNGELTLSNVKSFALDFLGDKL  151 (155)
Q Consensus       115 P~v~i~~~~~----~~kY~~~~~~t~~~I~~Fi~~f~~Gkl  151 (155)
                      |++++++...    +..+.+.| .+.+.|.+|+.+++....
T Consensus        91 Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~  130 (244)
T 3q6o_A           91 PTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHH  130 (244)
T ss_dssp             SEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCT
T ss_pred             CEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhcc
Confidence            9999998521    22233334 589999999999886543

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.60  E-value=5.4e-05  Score=51.55  Aligned_cols=79  Identities=11%  Similarity=0.088  Sum_probs=58.8

Q ss_pred             CCeEecCCCchhhhhcCCC--ceEEEEeecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCcchhhhhhhhCCCC---
Q 031686           41 PPMITYSRETTPLILNSPL--KLLWLFAAVH--DSEA-KSIFQETARAFKG-KLLFVYSQIYPKLKGQIFDYFGVTC---  111 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~~~--~~v~lf~~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~~~~~~~~~gl~~---  111 (155)
                      ..+.+++.+++........  +.++.|...-  .-.. ...+.++|+++++ ++.|+.+|.+.  ...+.+.|++..   
T Consensus         7 ~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~~~   84 (137)
T 2dj0_A            7 GYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGR--YTDVSTRYKVSTSPL   84 (137)
T ss_dssp             SCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTT--CHHHHHHTTCCCCSS
T ss_pred             ceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCcc--CHHHHHHccCcccCC
Confidence            3578889999887776554  4566666542  2244 6788999999986 79999999986  577889999861   


Q ss_pred             -CCcceEEEEe
Q 031686          112 -YTSRVIAVAS  121 (155)
Q Consensus       112 -~~~P~v~i~~  121 (155)
                       ..+|+++++.
T Consensus        85 ~~~~Pt~~~~~   95 (137)
T 2dj0_A           85 TKQLPTLILFQ   95 (137)
T ss_dssp             SSCSSEEEEES
T ss_pred             cCCCCEEEEEE
Confidence             1489999885

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=97.58  E-value=0.00084  Score=43.98  Aligned_cols=96  Identities=11%  Similarity=0.111  Sum_probs=64.4

Q ss_pred             eEecC-CCchhhhhcC--CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           43 MITYS-RETTPLILNS--PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        43 v~e~~-~~~~~~i~~~--~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      |.+++ .+++.+....  ++++++-|...-  .-.. ...+.++|+++. ++.|+.+|.+.  ++.+.+.||+..  +|+
T Consensus         2 V~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~d~--~~~l~~~~~V~~--~PT   76 (105)
T 3zzx_A            2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-DVVFLKVDVDE--CEDIAQDNQIAC--MPT   76 (105)
T ss_dssp             CEECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TEEEEEEETTT--CHHHHHHTTCCB--SSE
T ss_pred             eEEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccC-CeEEEEEeccc--CHHHHHHcCCCe--ecE
Confidence            34454 3556665543  334455555432  2244 667888888875 58899999986  678999999975  899


Q ss_pred             EEEEecCCCe-eecCCCCCCHHHHHHHHHHH
Q 031686          117 IAVASIRKRK-KYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       117 v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      ++++..  |+ ...+.| .+++.|.+||++.
T Consensus        77 ~~~~~~--G~~v~~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           77 FLFMKN--GQKLDSLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             EEEEET--TEEEEEEES-CCHHHHHHHHHHH
T ss_pred             EEEEEC--CEEEEEEeC-cCHHHHHHHHHhc
Confidence            998863  43 333445 4789999999864

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=97.58  E-value=0.0002  Score=47.94  Aligned_cols=98  Identities=14%  Similarity=0.160  Sum_probs=66.2

Q ss_pred             CeEecCCCchhhhhcC--CCceEEEEeec-------C--ChhH-HHHHHHHHHhhcCceEEEEEeC-------CCcchhh
Q 031686           42 PMITYSRETTPLILNS--PLKLLWLFAAV-------H--DSEA-KSIFQETARAFKGKLLFVYSQI-------YPKLKGQ  102 (155)
Q Consensus        42 ~v~e~~~~~~~~i~~~--~~~~v~lf~~~-------~--~~~~-~~~~~~vA~~~~~~i~F~~vd~-------~~~~~~~  102 (155)
                      .+...+.+++......  +.++++.|...       -  .-.. ...+.++++++.+++.|+.+|.       +.  ...
T Consensus         6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~--~~~   83 (123)
T 1wou_A            6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDP--NND   83 (123)
T ss_dssp             EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCT--TCH
T ss_pred             eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhch--hHH
Confidence            3445566667666654  55666667655       2  1234 6678889999988899999998       43  567


Q ss_pred             hhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHH
Q 031686          103 IFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD  145 (155)
Q Consensus       103 ~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~  145 (155)
                      +.+.||+..  +|++++++.  +.+..-....+++.|++|+++
T Consensus        84 ~~~~~~i~~--~Pt~~~~~~--~~~~~g~~~~~~~~l~~~i~~  122 (123)
T 1wou_A           84 FRKNLKVTA--VPTLLKYGT--PQKLVESECLQANLVEMLFSE  122 (123)
T ss_dssp             HHHHHCCCS--SSEEEETTS--SCEEEGGGGGCHHHHHHHHHC
T ss_pred             HHHHCCCCe--eCEEEEEcC--CceEeccccCCHHHHHHHHhc
Confidence            788899974  899998875  323221112578889998863

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=97.52  E-value=0.00061  Score=46.22  Aligned_cols=102  Identities=11%  Similarity=0.144  Sum_probs=68.3

Q ss_pred             CeEecCC-CchhhhhcCC--CceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcc
Q 031686           42 PMITYSR-ETTPLILNSP--LKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSR  115 (155)
Q Consensus        42 ~v~e~~~-~~~~~i~~~~--~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P  115 (155)
                      .+.+++. +++..+....  ++.++.|...-  .-.. ...+.++++++  ++.|+.+|.+.  ...+.+.||+..  +|
T Consensus        21 ~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~~--~~~l~~~~~v~~--~P   94 (133)
T 3cxg_A           21 IYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDI--HPKLNDQHNIKA--LP   94 (133)
T ss_dssp             EEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETTT--CHHHHHHTTCCS--SS
T ss_pred             cEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEeccc--hHHHHHhcCCCC--CC
Confidence            4667764 7777777654  34566665543  1234 56677777776  58999999886  567888999864  89


Q ss_pred             eEEEEe-cCCC--eeecCCCCCCHHHHHHHHHHHHcCC
Q 031686          116 VIAVAS-IRKR--KKYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       116 ~v~i~~-~~~~--~kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      +++++. .++.  ....+.|. +.+.|.++|+.++..+
T Consensus        95 t~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~~~  131 (133)
T 3cxg_A           95 TFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCLEK  131 (133)
T ss_dssp             EEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSEEC
T ss_pred             EEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHHhh
Confidence            999883 2211  22333454 8999999999987543

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=97.52  E-value=0.00047  Score=42.36  Aligned_cols=77  Identities=13%  Similarity=0.104  Sum_probs=56.8

Q ss_pred             EEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHH
Q 031686           62 LWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSN  138 (155)
Q Consensus        62 v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~  138 (155)
                      ++.|....  .-.. ...+.++++++.+++.|+.+|.+.  ...+.+.+|+..  .|++++ +   |+. .+.|..+.+.
T Consensus         5 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~--~Pt~~~-~---G~~-~~~G~~~~~~   75 (85)
T 1nho_A            5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMV--DREKAIEYGLMA--VPAIAI-N---GVV-RFVGAPSREE   75 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTT--CGGGGGGTCSSC--SSEEEE-T---TTE-EEECSSCCHH
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCC--CHHHHHhCCcee--eCEEEE-C---CEE-EEccCCCHHH
Confidence            45565442  2234 668889999998889999999986  567888899864  899988 3   333 3345568899


Q ss_pred             HHHHHHHHH
Q 031686          139 VKSFALDFL  147 (155)
Q Consensus       139 I~~Fi~~f~  147 (155)
                      |.+++++.+
T Consensus        76 l~~~l~~~l   84 (85)
T 1nho_A           76 LFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            999998765

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=97.51  E-value=0.00052  Score=47.71  Aligned_cols=98  Identities=9%  Similarity=0.038  Sum_probs=68.4

Q ss_pred             CCCchhhhh--cCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEe
Q 031686           47 SRETTPLIL--NSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVAS  121 (155)
Q Consensus        47 ~~~~~~~i~--~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~  121 (155)
                      +.+++....  +.+.++++-|...-  .-.. ...+.++|+++.+++.|+.+|.+.  ...+.+.||+..  +|++++..
T Consensus        10 ~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~--~~~l~~~~~v~~--~Pt~~~~~   85 (149)
T 3gix_A           10 SKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQ--TAVYTQYFDISY--IPSTVFFF   85 (149)
T ss_dssp             SHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTT--CCHHHHHTTCCS--SSEEEEEE
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCc--CHHHHHHcCCCc--cCeEEEEE
Confidence            345566555  34556666665442  2234 668889999998889999999986  678889999974  89998665


Q ss_pred             cCCCee---------ecCCC-CCCHHHHHHHHHHHHcC
Q 031686          122 IRKRKK---------YVLNG-ELTLSNVKSFALDFLGD  149 (155)
Q Consensus       122 ~~~~~k---------Y~~~~-~~t~~~I~~Fi~~f~~G  149 (155)
                      . ....         ..+.| ..+.+.|.++++.+..|
T Consensus        86 ~-G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~  122 (149)
T 3gix_A           86 N-GQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRG  122 (149)
T ss_dssp             T-TEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHH
T ss_pred             C-CeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHH
Confidence            3 2222         33345 57889999999988654

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=97.51  E-value=0.0016  Score=54.37  Aligned_cols=107  Identities=11%  Similarity=0.092  Sum_probs=77.7

Q ss_pred             CeEecCCCchhhhh-cCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC---ceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           42 PMITYSRETTPLIL-NSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG---KLLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        42 ~v~e~~~~~~~~i~-~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~---~i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      .|.+++.+++.... +++++.++.|...-  .-.. ...+.++|+++++   .+.|+.+|.+......+.+.||+..  +
T Consensus        13 ~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~--~   90 (519)
T 3t58_A           13 PLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAG--F   90 (519)
T ss_dssp             SSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCS--B
T ss_pred             CcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcc--c
Confidence            47889999988755 44455566676542  2244 6788999999887   7999999986434678899999974  8


Q ss_pred             ceEEEEecC--CCe-eecCCCCCCHHHHHHHHHHHHcCC
Q 031686          115 RVIAVASIR--KRK-KYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       115 P~v~i~~~~--~~~-kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      |++++++..  .|+ .....+..+.+.|.+||.+++...
T Consensus        91 PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~  129 (519)
T 3t58_A           91 PTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESH  129 (519)
T ss_dssp             SEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTC
T ss_pred             CEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhc
Confidence            999999851  121 122234579999999999988653

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=97.50  E-value=7.5e-05  Score=49.88  Aligned_cols=105  Identities=10%  Similarity=0.161  Sum_probs=71.3

Q ss_pred             CCeEec-CCCchhhhhcC----CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCC
Q 031686           41 PPMITY-SRETTPLILNS----PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCY  112 (155)
Q Consensus        41 P~v~e~-~~~~~~~i~~~----~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~  112 (155)
                      +.+.++ +.+++......    +++.++.|....  .-.. ...+.+++++++ ++.|+.+|.+.  ...+.+.||+.. 
T Consensus        14 ~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~--~~~~~~~~~v~~-   89 (130)
T 1wmj_A           14 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVDE--LKEVAEKYNVEA-   89 (130)
T ss_dssp             SSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTTT--SGGGHHHHTCCS-
T ss_pred             cceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEeccc--hHHHHHHcCCCc-
Confidence            345566 34666665553    555666666542  2234 667888998886 68999999886  567889999874 


Q ss_pred             CcceEEEEecCCCe-eecCCCCCCHHHHHHHHHHHHcCCCcc
Q 031686          113 TSRVIAVASIRKRK-KYVLNGELTLSNVKSFALDFLGDKLRN  153 (155)
Q Consensus       113 ~~P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~Gkl~p  153 (155)
                       .|+++++.  .|+ ...+.| .+.+.|.+|+++++...-.+
T Consensus        90 -~Pt~~~~~--~g~~~~~~~g-~~~~~l~~~l~~~~~~~~~~  127 (130)
T 1wmj_A           90 -MPTFLFIK--DGAEADKVVG-ARKDDLQNTIVKHVGATAAS  127 (130)
T ss_dssp             -SCCCCBCT--TTTCCBCCCT-TCTTTHHHHHHHHTSSSCSS
T ss_pred             -cceEEEEe--CCeEEEEEeC-CCHHHHHHHHHHHHhccCCC
Confidence             89988763  232 233445 57889999999998765443

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=97.38  E-value=0.0045  Score=46.39  Aligned_cols=121  Identities=11%  Similarity=-0.022  Sum_probs=81.3

Q ss_pred             EeccCCcCHHHHHHHHHhC---CCCCeEecCCCchhhhhcCCCce-EEEEeecC--ChhH-HHHHHHHHHhhc----Cce
Q 031686           20 IFSDVSFTISVIDDFISLN---KIPPMITYSRETTPLILNSPLKL-LWLFAAVH--DSEA-KSIFQETARAFK----GKL   88 (155)
Q Consensus        20 ~~y~g~~~~~~l~~fI~~~---~~P~v~e~~~~~~~~i~~~~~~~-v~lf~~~~--~~~~-~~~~~~vA~~~~----~~i   88 (155)
                      ..|.|..+.+++.+|+...   ..+. ..+++++.+.+-+...+. ++.|....  .-.. ...+.++|.+++    +++
T Consensus        97 ~~~~G~~~~~~l~~fv~~~l~~~~~~-~~l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v  175 (243)
T 2hls_A           97 VRWTGIPAGEEIRALVEVIMRLSEDE-SGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVI  175 (243)
T ss_dssp             EEEESCCCTTHHHHHHHHHHHHHTTC-CCCCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred             eeEcCCCcHHHHHHHHHHHHhccCCC-CCCCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcE
Confidence            3466766677888887653   1111 234555555554444455 55566543  2345 778888998883    579


Q ss_pred             EEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCC
Q 031686           89 LFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus        89 ~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      .+..+|.+.  +..+.+.+|+..  +|++.+ +   |+. .+.|..+.+.|.+|+...+...
T Consensus       176 ~~~~vd~~~--~~~~~~~~~V~~--vPt~~i-~---G~~-~~~G~~~~~~l~~~l~~~~~~~  228 (243)
T 2hls_A          176 LSEAVEAYE--NPDIADKYGVMS--VPSIAI-N---GYL-VFVGVPYEEDFLDYVKSAAEGR  228 (243)
T ss_dssp             EEEEEETTT--CHHHHHHTTCCS--SSEEEE-T---TEE-EEESCCCHHHHHHHHHHHHTTC
T ss_pred             EEEEEECcc--CHHHHHHcCCee--eCeEEE-C---CEE-EEeCCCCHHHHHHHHHHHhhcc
Confidence            999999986  567788899864  899987 3   332 2457788999999999987643

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=97.38  E-value=0.0016  Score=44.78  Aligned_cols=96  Identities=8%  Similarity=-0.002  Sum_probs=66.0

Q ss_pred             CCchhh-hhc-CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686           48 RETTPL-ILN-SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI  122 (155)
Q Consensus        48 ~~~~~~-i~~-~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~  122 (155)
                      .+++.. +.. ++.++++.|...-  .-.. ...+.++|+++++++.|+.+|.+.  ...+.+.||+..  +|+++++..
T Consensus        11 ~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~~~~~~~i~~--~Pt~~~~~~   86 (142)
T 1qgv_A           11 GWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITE--VPDFNKMYELYD--PCTVMFFFR   86 (142)
T ss_dssp             HHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT--CCTTTTSSCSCS--SCEEEEEET
T ss_pred             HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEcccc--CHHHHHHcCCCC--CCEEEEEEC
Confidence            455554 333 4556666666542  2234 667889999998889999999986  567888899874  899988863


Q ss_pred             CCCeee----------cCCCCCC-HHHHHHHHHHHHcC
Q 031686          123 RKRKKY----------VLNGELT-LSNVKSFALDFLGD  149 (155)
Q Consensus       123 ~~~~kY----------~~~~~~t-~~~I~~Fi~~f~~G  149 (155)
                        |+.-          .+.+.++ .+.+.++++.+++|
T Consensus        87 --G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~  122 (142)
T 1qgv_A           87 --NKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRG  122 (142)
T ss_dssp             --TEEEEEECC------CCSCCSCHHHHHHHHHHHHHH
T ss_pred             --CcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHH
Confidence              3221          2233454 88999999998876

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=97.37  E-value=0.0014  Score=44.34  Aligned_cols=105  Identities=7%  Similarity=-0.004  Sum_probs=68.1

Q ss_pred             CCCeEecC-CCchhhhhcC--CCceEEEEeecC-C-hhH-HHHH---HHHHHhhcCceEEEEEeCCCc--chhhhhhhhC
Q 031686           40 IPPMITYS-RETTPLILNS--PLKLLWLFAAVH-D-SEA-KSIF---QETARAFKGKLLFVYSQIYPK--LKGQIFDYFG  108 (155)
Q Consensus        40 ~P~v~e~~-~~~~~~i~~~--~~~~v~lf~~~~-~-~~~-~~~~---~~vA~~~~~~i~F~~vd~~~~--~~~~~~~~~g  108 (155)
                      .|.+..++ .+++......  ++++++.|...- . -.. ...+   .++++++++ +.|+.+|.+..  ....+.+.||
T Consensus        10 ~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~-~~~~~vd~~~~~~~~~~l~~~~~   88 (134)
T 2fwh_A           10 HLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLN   88 (134)
T ss_dssp             CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTT
T ss_pred             CCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-cEEEEEeCCCCcchHHHHHHHcC
Confidence            45555443 3444444432  556666676542 1 122 3344   677888775 99999998531  2567788999


Q ss_pred             CCCCCcceEEEEecCCCee--ecCCCCCCHHHHHHHHHHHH
Q 031686          109 VTCYTSRVIAVASIRKRKK--YVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       109 l~~~~~P~v~i~~~~~~~k--Y~~~~~~t~~~I~~Fi~~f~  147 (155)
                      +..  +|++++++.++...  +.+.|..+.+.|.++++...
T Consensus        89 v~~--~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~  127 (134)
T 2fwh_A           89 VLG--LPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQ  127 (134)
T ss_dssp             CCS--SSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC-
T ss_pred             CCC--CCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcC
Confidence            974  89999997643222  55678889999999998764

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=97.35  E-value=0.0054  Score=41.58  Aligned_cols=93  Identities=9%  Similarity=-0.019  Sum_probs=64.5

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCcc---------------------hhhhhhhhCCCCC
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKG-KLLFVYSQIYPKL---------------------KGQIFDYFGVTCY  112 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~---------------------~~~~~~~~gl~~~  112 (155)
                      ++++++.|....  .-.. ...+.++++++.+ .+.|+.++.+...                     ...+.+.||+.  
T Consensus        30 gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~--  107 (152)
T 2lja_A           30 GKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLIN--  107 (152)
T ss_dssp             TSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCC--
T ss_pred             CCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcC--
Confidence            445666666442  2244 6778888888876 4888888776421                     12566778876  


Q ss_pred             CcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCCCc
Q 031686          113 TSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKLR  152 (155)
Q Consensus       113 ~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gkl~  152 (155)
                      ..|++++++.+....+...+..+.+.|.++|+...++.=+
T Consensus       108 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~~  147 (152)
T 2lja_A          108 GIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGLEGH  147 (152)
T ss_dssp             SSCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTCCSS
T ss_pred             CCCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhccccc
Confidence            4899999996543455556778899999999999877544

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=97.33  E-value=0.0041  Score=41.01  Aligned_cols=88  Identities=15%  Similarity=0.194  Sum_probs=59.2

Q ss_pred             CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCc---------------------chhhhhhhhCCCCC
Q 031686           57 SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPK---------------------LKGQIFDYFGVTCY  112 (155)
Q Consensus        57 ~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~---------------------~~~~~~~~~gl~~~  112 (155)
                      .+++.++.|....  .-.. ...+.++++++. ++.|+.++.+..                     ....+.+.||+.  
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~--  100 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVT--  100 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCC--
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCC--
Confidence            4456666676443  1244 677888888887 788888886531                     134566777875  


Q ss_pred             CcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          113 TSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       113 ~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      ..|++++++.++... .+.|..+.+.|.++++..++
T Consensus       101 ~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A          101 QQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             SSSEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred             CCceEEEECCCCCEE-EEecCCCHHHHHHHHHHHhc
Confidence            489999998653222 34567789999999988753

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=97.32  E-value=0.0065  Score=41.70  Aligned_cols=93  Identities=14%  Similarity=0.109  Sum_probs=59.7

Q ss_pred             CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcc--hhhhhhhh-----------------------
Q 031686           57 SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYPKL--KGQIFDYF-----------------------  107 (155)
Q Consensus        57 ~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~--~~~~~~~~-----------------------  107 (155)
                      .++++++.|....  .-.. ...+.+++++++++ +.|+.++.+...  ..+.++.+                       
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG  112 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence            3455666666442  1234 66788888898875 888888876421  22222222                       


Q ss_pred             CCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCCC
Q 031686          108 GVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKL  151 (155)
Q Consensus       108 gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gkl  151 (155)
                      |+.  ..|++++++.+....+.+.|..+.+.+.++|+..+...-
T Consensus       113 ~i~--~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~  154 (165)
T 3or5_A          113 GIT--GIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGAKA  154 (165)
T ss_dssp             CSC--SSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC---
T ss_pred             CCC--CCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhhhc
Confidence            443  489999998754334555677899999999999987543

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=97.32  E-value=0.0074  Score=41.09  Aligned_cols=96  Identities=9%  Similarity=-0.030  Sum_probs=63.6

Q ss_pred             CCCceEEEEeecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCc----------------------chhhhhhhhCCC
Q 031686           57 SPLKLLWLFAAVH--DSEA-KSIFQETARAFKG-KLLFVYSQIYPK----------------------LKGQIFDYFGVT  110 (155)
Q Consensus        57 ~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~----------------------~~~~~~~~~gl~  110 (155)
                      .++++++.|....  .-.. ...+.++++++++ .+.++.++.+..                      ....+.+.||..
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT  102 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence            3445566666442  1234 6678888888854 588888776521                      123455667732


Q ss_pred             CCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCCCc
Q 031686          111 CYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKLR  152 (155)
Q Consensus       111 ~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gkl~  152 (155)
                      -..+|++.+++.+....+.+.|..+.+.|.++|+...+++-+
T Consensus       103 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~~~~  144 (151)
T 3raz_A          103 VGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKCRE  144 (151)
T ss_dssp             SCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC---
T ss_pred             cCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHHhhc
Confidence            345899999997644466677888999999999999988644

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=97.29  E-value=0.0058  Score=40.40  Aligned_cols=87  Identities=11%  Similarity=0.092  Sum_probs=59.0

Q ss_pred             CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCc--------------------chhhhhhhhCCCCCC
Q 031686           57 SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPK--------------------LKGQIFDYFGVTCYT  113 (155)
Q Consensus        57 ~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~--------------------~~~~~~~~~gl~~~~  113 (155)
                      .+++.++.|....  .-.. ...+.++++++. ++.|+.++.+..                    ....+.+.||+..  
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~--   99 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPW--   99 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCS--
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCC--
Confidence            4456676776443  1234 667888888887 788888877641                    1245667788764  


Q ss_pred             cceEEEEecCCCeeecCC---CCCCHHHHHHHHHHHH
Q 031686          114 SRVIAVASIRKRKKYVLN---GELTLSNVKSFALDFL  147 (155)
Q Consensus       114 ~P~v~i~~~~~~~kY~~~---~~~t~~~I~~Fi~~f~  147 (155)
                      .|++.+++.++... .+.   |..+.+.|.+++++++
T Consensus       100 ~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A          100 QPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             SSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             CCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence            89999998653323 344   6789999999998765

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=97.21  E-value=0.0036  Score=42.60  Aligned_cols=93  Identities=12%  Similarity=0.102  Sum_probs=61.7

Q ss_pred             CCCceEEEEeecC-C-hhH-HHHHHHHHHhhcC-ceEEEEEeCCCcc--------------------hhhhhhhhCCCCC
Q 031686           57 SPLKLLWLFAAVH-D-SEA-KSIFQETARAFKG-KLLFVYSQIYPKL--------------------KGQIFDYFGVTCY  112 (155)
Q Consensus        57 ~~~~~v~lf~~~~-~-~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~--------------------~~~~~~~~gl~~~  112 (155)
                      .++++++.|.... . -.. ...+.++++++.+ .+.|+.++.+...                    ...+.+.||+.. 
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-  103 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP-  103 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCS-
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCC-
Confidence            3455666666442 1 234 6678888888876 4777777665311                    235667788864 


Q ss_pred             CcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCCC
Q 031686          113 TSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKL  151 (155)
Q Consensus       113 ~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gkl  151 (155)
                       .|++++++.+....+.+.|..+.+.|.++|+..+++.-
T Consensus       104 -~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~~  141 (151)
T 2f9s_A          104 -LPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGET  141 (151)
T ss_dssp             -SCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC--
T ss_pred             -CCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhhhh
Confidence             89999998653334445577899999999999988764

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=97.16  E-value=0.0029  Score=42.30  Aligned_cols=86  Identities=13%  Similarity=0.119  Sum_probs=58.8

Q ss_pred             CCCceEEEEeecC--ChhH-HHHHHHHHHhhc-CceEEEEEeCCC-----------------------cchhhhhhhhCC
Q 031686           57 SPLKLLWLFAAVH--DSEA-KSIFQETARAFK-GKLLFVYSQIYP-----------------------KLKGQIFDYFGV  109 (155)
Q Consensus        57 ~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~-~~i~F~~vd~~~-----------------------~~~~~~~~~~gl  109 (155)
                      .++++++.|....  .-.. ...+.+++++++ .++.|+.++.+.                       .....+.+.||+
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  112 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI  112 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence            4556666676443  1244 678888999987 568888887753                       113466788888


Q ss_pred             CCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHH
Q 031686          110 TCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFAL  144 (155)
Q Consensus       110 ~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~  144 (155)
                      ..  .|++++++.+....+.+.|..+.+.|.++|+
T Consensus       113 ~~--~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  145 (145)
T 3erw_A          113 IT--IPTSFLLNEKGEIEKTKIGPMTAEQLKEWTE  145 (145)
T ss_dssp             CE--ESEEEEECTTCCEEEEEESCCCHHHHHHHHC
T ss_pred             Cc--cCeEEEEcCCCcEEEEEcCCcCHHHHHHhhC
Confidence            64  8999999875333445567789999998873

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=96.18  E-value=7.5e-05  Score=50.10  Aligned_cols=98  Identities=7%  Similarity=0.011  Sum_probs=64.6

Q ss_pred             hhhhhcCCCceEEEEeecC--ChhH-HHHH---HHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCC
Q 031686           51 TPLILNSPLKLLWLFAAVH--DSEA-KSIF---QETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRK  124 (155)
Q Consensus        51 ~~~i~~~~~~~v~lf~~~~--~~~~-~~~~---~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~  124 (155)
                      +......++++++.|...-  .-.. ...+   .++++.+.+++.|+.+|.+......+.+.||+..  +|++++++...
T Consensus        12 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~--~Pt~~~~d~~~   89 (130)
T 2lst_A           12 LALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPG--TPTFVFLVPKA   89 (130)
Confidence            3333344555565665442  1122 3445   6777777777889988885433567788899864  89999997543


Q ss_pred             Cee---ecCCCCCCHHHHHHHHHHHHcCC
Q 031686          125 RKK---YVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       125 ~~k---Y~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      |+.   ..+.|..+.+.|.++++.++++.
T Consensus        90 G~~~~~~~~~G~~~~~~l~~~l~~~~~~~  118 (130)
T 2lst_A           90 GAWEEVGRLFGSRPRAEFLKELRQVCVKG  118 (130)
Confidence            432   34556778899999999987654

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=97.10  E-value=0.0041  Score=41.68  Aligned_cols=98  Identities=12%  Similarity=0.030  Sum_probs=66.3

Q ss_pred             CCCeEecCCCchhhhhcC-CC--ceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCC
Q 031686           40 IPPMITYSRETTPLILNS-PL--KLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYT  113 (155)
Q Consensus        40 ~P~v~e~~~~~~~~i~~~-~~--~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~  113 (155)
                      +..+.++|.+++...... +.  ++++-|....  .-.. ...+.++|++|. ++.|+.+|.+.  .   .+.|++.  .
T Consensus         2 ~G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-~v~f~kvd~d~--~---~~~~~v~--~   73 (118)
T 3evi_A            2 FGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-ETKFVKAIVNS--C---IQHYHDN--C   73 (118)
T ss_dssp             CCSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-TSEEEEEEGGG--T---STTCCGG--G
T ss_pred             CcceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CCEEEEEEhHH--h---HHHCCCC--C
Confidence            456788888888775543 32  4566665543  2344 678899999986 59999999985  2   4667775  4


Q ss_pred             cceEEEEecCCC-eee-cCC---C-CCCHHHHHHHHHH
Q 031686          114 SRVIAVASIRKR-KKY-VLN---G-ELTLSNVKSFALD  145 (155)
Q Consensus       114 ~P~v~i~~~~~~-~kY-~~~---~-~~t~~~I~~Fi~~  145 (155)
                      +|++.++..... .++ -..   + +++.++|+.++..
T Consensus        74 ~PT~~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           74 LPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             CSEEEEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred             CCEEEEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence            899999884210 122 121   2 6899999999975

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=97.05  E-value=0.0032  Score=47.25  Aligned_cols=90  Identities=11%  Similarity=0.082  Sum_probs=61.2

Q ss_pred             hhhhhcC-CCce-EEEEeec--C-ChhH-HHHHHHHHHh---hcCc--eEEEEEeCCCcchhhhhhhhCCCCCCcceEEE
Q 031686           51 TPLILNS-PLKL-LWLFAAV--H-DSEA-KSIFQETARA---FKGK--LLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAV  119 (155)
Q Consensus        51 ~~~i~~~-~~~~-v~lf~~~--~-~~~~-~~~~~~vA~~---~~~~--i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i  119 (155)
                      +..+++. +.|+ +.+|.+.  . .... ...+.++|+.   ++++  +.|+.+|.+.  ++++.+.||++  ..|++.+
T Consensus        17 l~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~--~~~~~~~~gv~--~~Pt~~i   92 (243)
T 2hls_A           17 LRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRES--DSDKFSEFKVE--RVPTVAF   92 (243)
T ss_dssp             HHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTT--THHHHHHTTCC--SSSEEEE
T ss_pred             HHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCc--CHHHHHhcCCC--cCCEEEE
Confidence            4445543 2455 4444443  2 2455 7788899988   5555  9999999886  67889999998  5899998


Q ss_pred             EecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          120 ASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       120 ~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      .+.  ..+|.  |.-+.+.+..|+..+++
T Consensus        93 ~~g--~~~~~--G~~~~~~l~~fv~~~l~  117 (243)
T 2hls_A           93 LGG--EVRWT--GIPAGEEIRALVEVIMR  117 (243)
T ss_dssp             TTT--TEEEE--SCCCTTHHHHHHHHHHH
T ss_pred             ECC--ceeEc--CCCcHHHHHHHHHHHHh
Confidence            742  44562  22355788899888775

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.04  E-value=0.011  Score=40.10  Aligned_cols=94  Identities=11%  Similarity=-0.035  Sum_probs=61.9

Q ss_pred             CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCC---------------------cchhhhhhhhCCCC
Q 031686           57 SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYP---------------------KLKGQIFDYFGVTC  111 (155)
Q Consensus        57 ~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~---------------------~~~~~~~~~~gl~~  111 (155)
                      .+++.++.|....  .-.. ...+.++++++.++ +.++.++.+.                     .....+.+.||+..
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  106 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV  106 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence            3455666666442  2234 66788888888754 7776655220                     01345677888864


Q ss_pred             CCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCCCc
Q 031686          112 YTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKLR  152 (155)
Q Consensus       112 ~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gkl~  152 (155)
                        .|++++++.+....+.+.|..+.+.|.++|+..+.+.-.
T Consensus       107 --~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~~  145 (153)
T 2l5o_A          107 --YPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNSDA  145 (153)
T ss_dssp             --SSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHHCCSS
T ss_pred             --cCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHhhhh
Confidence              899999986533334445678899999999999887644

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=97.00  E-value=0.0026  Score=47.01  Aligned_cols=95  Identities=11%  Similarity=0.097  Sum_probs=64.7

Q ss_pred             Eec-CCCchhhhhcCCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686           44 ITY-SRETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI  122 (155)
Q Consensus        44 ~e~-~~~~~~~i~~~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~  122 (155)
                      .++ |.++++.+.+.....++.|+...+.+..+.|.++|+.++ ++.|+.+..     ..+++.+|++   .|+|++...
T Consensus        12 ~~l~s~~~~~~~l~~~~v~vVgff~~~~~~~~~~f~~~A~~l~-~~~F~~t~~-----~~v~~~~~v~---~p~i~lfk~   82 (227)
T 4f9z_D           12 TWLTDVPAAMEFIAATEVAVIGFFQDLEIPAVPILHSMVQKFP-GVSFGISTD-----SEVLTHYNIT---GNTICLFRL   82 (227)
T ss_dssp             EECCSHHHHHHHHHTSSEEEEEECSCSCSTHHHHHHHHTTTCT-TSEEEEECC-----HHHHHHTTCC---SSEEEEEET
T ss_pred             eeeCCHHHHHHHHhcCCeEEEEEecCCCchhHHHHHHHHHhCC-CceEEEECC-----HHHHHHcCCC---CCeEEEEEe
Confidence            344 446777766665444777776543222778999999995 788988643     3577888886   399998885


Q ss_pred             CCCeeecCC----CCCCHHHHHHHHHHHH
Q 031686          123 RKRKKYVLN----GELTLSNVKSFALDFL  147 (155)
Q Consensus       123 ~~~~kY~~~----~~~t~~~I~~Fi~~f~  147 (155)
                      .....-.++    +.++.+.|.+||+.-.
T Consensus        83 ~~~~~~~~~~~~~g~~~~~~l~~fi~~~~  111 (227)
T 4f9z_D           83 VDNEQLNLEDEDIESIDATKLSRFIEINS  111 (227)
T ss_dssp             TTTEEEEECHHHHHTCCHHHHHHHHHHHC
T ss_pred             cCcccccccccccCCCCHHHHHHHHHHhC
Confidence            332222334    3689999999998753

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=96.97  E-value=0.0037  Score=45.60  Aligned_cols=96  Identities=13%  Similarity=0.109  Sum_probs=62.7

Q ss_pred             chhhhh-c-CCCce-EEEEeec-C-C-hhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686           50 TTPLIL-N-SPLKL-LWLFAAV-H-D-SEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI  122 (155)
Q Consensus        50 ~~~~i~-~-~~~~~-v~lf~~~-~-~-~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~  122 (155)
                      .+..++ . ...++ ++.|... . . -.. ...+.++|+. .+++.|+.+|.+.+++.++.+.||+.  ..|+++++..
T Consensus        11 ~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~--~~Pt~~~~~~   87 (226)
T 1a8l_A           11 VIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRID--RAPATTITQD   87 (226)
T ss_dssp             HHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCC--SSSEEEEEET
T ss_pred             HHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CCceEEEEEeCCCcccHHHHHHcCCC--cCceEEEEcC
Confidence            344555 2 23455 4566554 3 2 345 6778888865 67899999998853357889999997  4899999864


Q ss_pred             CCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          123 RKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       123 ~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      .......+.|..+.+.+.+|+..++.
T Consensus        88 g~~~~~~~~G~~~~~~l~~~l~~~l~  113 (226)
T 1a8l_A           88 GKDFGVRYFGLPAGHEFAAFLEDIVD  113 (226)
T ss_dssp             TBCCSEEEESCCCTTHHHHHHHHHHH
T ss_pred             CceeeEEEeccCcHHHHHHHHHHHHh
Confidence            21111223345567788999888764

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=96.92  E-value=0.019  Score=38.36  Aligned_cols=88  Identities=10%  Similarity=0.020  Sum_probs=58.8

Q ss_pred             CCCceEEEEeecC--ChhH-HHHHHHHHHhh-cCc-eEEEEEeCCCcc-----------------------hhhhhhhhC
Q 031686           57 SPLKLLWLFAAVH--DSEA-KSIFQETARAF-KGK-LLFVYSQIYPKL-----------------------KGQIFDYFG  108 (155)
Q Consensus        57 ~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~-~~~-i~F~~vd~~~~~-----------------------~~~~~~~~g  108 (155)
                      .++++++.|....  .-.. ...+.++++++ .++ +.++.++.+...                       ...+.+.||
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            3455666666442  2344 67888899998 664 888888766422                       236678888


Q ss_pred             CCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcC
Q 031686          109 VTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus       109 l~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                      +.  .+|++++++.+....+..   .+.+.+.++++.+++.
T Consensus       112 v~--~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~ll~~  147 (148)
T 3fkf_A          112 IL--TLPTNILLSPTGKILARD---IQGEALTGKLKELLKT  147 (148)
T ss_dssp             CC--SSSEEEEECTTSBEEEES---CCHHHHHHHHHHHC--
T ss_pred             CC--CcCEEEEECCCCeEEEec---CCHHHHHHHHHHHHcc
Confidence            86  489999998753333432   2889999999988754

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.87  E-value=0.008  Score=40.68  Aligned_cols=99  Identities=13%  Similarity=0.040  Sum_probs=65.5

Q ss_pred             CCCCeEecCCCchhhhhcCC---CceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCC
Q 031686           39 KIPPMITYSRETTPLILNSP---LKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCY  112 (155)
Q Consensus        39 ~~P~v~e~~~~~~~~i~~~~---~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~  112 (155)
                      ....+.+++.+++.......   +++++.|...-  .-.. ...+.++|+++. ++.|+.+|.+.  .   .+.|++.  
T Consensus         8 ~~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~~~--~---~~~~~i~--   79 (135)
T 2dbc_A            8 KFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-ETKFVKAIVNS--C---IEHYHDN--   79 (135)
T ss_dssp             CCCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-SEEEEEECCSS--S---CSSCCSS--
T ss_pred             CCCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CcEEEEEEhhc--C---cccCCCC--
Confidence            45567778877777655432   34566665442  2244 667888999885 59999999885  2   2567776  


Q ss_pred             CcceEEEEecCCCeeecCCC-------CCCHHHHHHHHHHH
Q 031686          113 TSRVIAVASIRKRKKYVLNG-------ELTLSNVKSFALDF  146 (155)
Q Consensus       113 ~~P~v~i~~~~~~~kY~~~~-------~~t~~~I~~Fi~~f  146 (155)
                      .+|++++++. ......+.|       +++.+.|++++...
T Consensus        80 ~~Pt~~~~~~-G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           80 CLPTIFVYKN-GQIEGKFIGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             CCSEEEEESS-SSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEEC-CEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence            4899998873 211111111       46899999999986

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=96.86  E-value=0.0095  Score=41.19  Aligned_cols=90  Identities=11%  Similarity=-0.062  Sum_probs=59.8

Q ss_pred             CCCceEEEEe-ecC-C-hhH-HHHH---HHHHHhhcCceEEEEEeCCCc---------chhhhhhhhCCCCCCcceEEEE
Q 031686           57 SPLKLLWLFA-AVH-D-SEA-KSIF---QETARAFKGKLLFVYSQIYPK---------LKGQIFDYFGVTCYTSRVIAVA  120 (155)
Q Consensus        57 ~~~~~v~lf~-~~~-~-~~~-~~~~---~~vA~~~~~~i~F~~vd~~~~---------~~~~~~~~~gl~~~~~P~v~i~  120 (155)
                      .++++++.|. ..- . -.. ...+   .++++....++.++.+|.+..         ....+.+.||+..  +|+++++
T Consensus        46 ~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~--~Pt~~~~  123 (154)
T 2ju5_A           46 DHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTG--FPELVFI  123 (154)
T ss_dssp             HCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCS--SSEEEEE
T ss_pred             CCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCC--CCEEEEE
Confidence            3556666665 332 1 122 3333   455555555789999998752         1246778899875  8999999


Q ss_pred             ecCCCeeecCCCCC--CHHHHHHHHHHHHcC
Q 031686          121 SIRKRKKYVLNGEL--TLSNVKSFALDFLGD  149 (155)
Q Consensus       121 ~~~~~~kY~~~~~~--t~~~I~~Fi~~f~~G  149 (155)
                      +.++...+.. |..  +.+.+.++++.++..
T Consensus       124 d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~~  153 (154)
T 2ju5_A          124 DAEGKQLARM-GFEPGGGAAYVSKVKSALKL  153 (154)
T ss_dssp             CTTCCEEEEE-CCCTTCHHHHHHHHHHHHTC
T ss_pred             cCCCCEEEEe-cCCCCCHHHHHHHHHHHHhc
Confidence            8654445556 755  899999999998764

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=96.86  E-value=0.028  Score=38.17  Aligned_cols=91  Identities=11%  Similarity=0.004  Sum_probs=61.5

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcc-----------------------hhhhhhhhCCC
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYPKL-----------------------KGQIFDYFGVT  110 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~-----------------------~~~~~~~~gl~  110 (155)
                      ++++++.|....  .-.. ...+.++++++.++ +.++.++.+...                       ...+.+.||+.
T Consensus        29 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  108 (152)
T 2lrn_A           29 GKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIV  108 (152)
T ss_dssp             TSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCC
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCCC
Confidence            445666666442  2234 66788888888765 888888776411                       24566788886


Q ss_pred             CCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCCCcc
Q 031686          111 CYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKLRN  153 (155)
Q Consensus       111 ~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gkl~p  153 (155)
                      .  .|++++++.+....+..   ++.+.|.++++.++++..+.
T Consensus       109 ~--~P~~~lid~~G~i~~~~---~~~~~l~~~l~~l~~~~~~~  146 (152)
T 2lrn_A          109 G--FPHIILVDPEGKIVAKE---LRGDDLYNTVEKFVNGAKEG  146 (152)
T ss_dssp             S--SCEEEEECTTSEEEEEC---CCTTHHHHHHHHHHTSSSSC
T ss_pred             c--CCeEEEECCCCeEEEee---CCHHHHHHHHHHHHhhcccc
Confidence            4  89999998653323332   46789999999998876654

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=96.86  E-value=0.011  Score=43.21  Aligned_cols=93  Identities=11%  Similarity=0.039  Sum_probs=62.6

Q ss_pred             hhhhh--cCCCce-EEEEeec--CC----hhH-HHHHHHHHHhh--cCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           51 TPLIL--NSPLKL-LWLFAAV--HD----SEA-KSIFQETARAF--KGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        51 ~~~i~--~~~~~~-v~lf~~~--~~----~~~-~~~~~~vA~~~--~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      +..++  +...|+ +++|.+.  ..    -.. ...+.++|+++  .+++.|+.+|.+.  ...+.+.||++.  .|++.
T Consensus        11 l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~--~Ptl~   86 (229)
T 2ywm_A           11 LKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFT--HKEETEKYGVDR--VPTIV   86 (229)
T ss_dssp             HHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTT--CHHHHHHTTCCB--SSEEE
T ss_pred             HHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcc--cHHHHHHcCCCc--CcEEE
Confidence            34445  344566 4555443  22    233 56677788777  6789999999886  678899999974  89999


Q ss_pred             EEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          119 VASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       119 i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +... +.....+.|..+.+.+.+|+.....
T Consensus        87 ~~~~-~~~~~~~~G~~~~~~l~~~~~~~~~  115 (229)
T 2ywm_A           87 IEGD-KDYGIRYIGLPAGLEFTTLINGIFH  115 (229)
T ss_dssp             EESS-SCCCEEEESCCCTTHHHHHHHHHHH
T ss_pred             EECC-CcccceecCCccHHHHHHHHHHHHh
Confidence            9863 1222334566677889999888753

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=96.78  E-value=0.022  Score=37.19  Aligned_cols=88  Identities=13%  Similarity=0.038  Sum_probs=57.8

Q ss_pred             CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCC--------------------------cchhhhhhhh
Q 031686           57 SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYP--------------------------KLKGQIFDYF  107 (155)
Q Consensus        57 ~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~--------------------------~~~~~~~~~~  107 (155)
                      .++++++.|....  .-.. ...+.++++++.+++.++.++...                          .....+.+.|
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  100 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY  100 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence            3455666666442  1234 667888888877788888884211                          0023466778


Q ss_pred             CCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHH
Q 031686          108 GVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       108 gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      |+..  .|++++++.++.-.+...|..+.+.+.++++.+
T Consensus       101 ~v~~--~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A          101 GVRS--YPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             TCCS--SSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             Cccc--CCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            8754  899999987543344555778899999998764

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=96.77  E-value=0.0088  Score=40.64  Aligned_cols=89  Identities=12%  Similarity=-0.036  Sum_probs=59.7

Q ss_pred             CceEEEEeecC-C-hhH-HHHHHHHHHhhcCceEEEEEeCC--C-----------------------cchhhhhhhhCCC
Q 031686           59 LKLLWLFAAVH-D-SEA-KSIFQETARAFKGKLLFVYSQIY--P-----------------------KLKGQIFDYFGVT  110 (155)
Q Consensus        59 ~~~v~lf~~~~-~-~~~-~~~~~~vA~~~~~~i~F~~vd~~--~-----------------------~~~~~~~~~~gl~  110 (155)
                      +++++.|.... . -.. ...+.++++++  ++.|+.++.+  .                       .....+.+.||+.
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  108 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET--GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVL  108 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH--CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBC
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCC
Confidence            45666666443 1 234 66788888888  5666666661  1                       0145667788886


Q ss_pred             CCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCCC
Q 031686          111 CYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKL  151 (155)
Q Consensus       111 ~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gkl  151 (155)
                        ..|++++++.+....+...|..+.+.|.++|++...+.=
T Consensus       109 --~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~  147 (154)
T 3ia1_A          109 --GQPWTFVVDREGKVVALFAGRAGREALLDALLLAGADLE  147 (154)
T ss_dssp             --SSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC-
T ss_pred             --cccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCccc
Confidence              489999998653334455677899999999999887653

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=96.69  E-value=0.026  Score=38.08  Aligned_cols=93  Identities=15%  Similarity=0.089  Sum_probs=58.9

Q ss_pred             CCceEEEEeecC-C-hhH-HHHHHHHHHhhcCc-eEEEEEeCCCcc--h------------------hhhhhhhCCCCCC
Q 031686           58 PLKLLWLFAAVH-D-SEA-KSIFQETARAFKGK-LLFVYSQIYPKL--K------------------GQIFDYFGVTCYT  113 (155)
Q Consensus        58 ~~~~v~lf~~~~-~-~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~--~------------------~~~~~~~gl~~~~  113 (155)
                      ++++++.|.... . -.. ...+.+++++++++ +.++.++.+...  .                  ..+.+.||+.  .
T Consensus        28 gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~--~  105 (152)
T 3gl3_A           28 GSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVK--G  105 (152)
T ss_dssp             TSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCC--S
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCC--C
Confidence            445566666442 2 234 66788888888875 788887766421  0                  1455668886  4


Q ss_pred             cceEEEEecCCCeeecCCC--CCCHHHHHHHHHHHHcCCCc
Q 031686          114 SRVIAVASIRKRKKYVLNG--ELTLSNVKSFALDFLGDKLR  152 (155)
Q Consensus       114 ~P~v~i~~~~~~~kY~~~~--~~t~~~I~~Fi~~f~~Gkl~  152 (155)
                      .|++++++.+....+...+  ..+.+.|.++|++.+.+.=.
T Consensus       106 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~~~  146 (152)
T 3gl3_A          106 MPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGNEG  146 (152)
T ss_dssp             SSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC----
T ss_pred             CCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHccccc
Confidence            8999999875333344333  35678999999998877543

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=96.69  E-value=0.03  Score=38.47  Aligned_cols=88  Identities=13%  Similarity=0.241  Sum_probs=58.1

Q ss_pred             CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCC------------------Ccc--h-------------
Q 031686           57 SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIY------------------PKL--K-------------  100 (155)
Q Consensus        57 ~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~------------------~~~--~-------------  100 (155)
                      .+++.++.|....  .-.. ...+.++++++. ++.|+.++.+                  ...  .             
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWI  114 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSE
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCee
Confidence            3455666676543  2244 678888889988 7888888776                  210  1             


Q ss_pred             -----hhhhhhhCCCCCCcceEEEEecCCCeeecCCCCC-CHHHHHHHHHHHHcC
Q 031686          101 -----GQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGEL-TLSNVKSFALDFLGD  149 (155)
Q Consensus       101 -----~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~-t~~~I~~Fi~~f~~G  149 (155)
                           ..+.+.||+.  ..|++++++.+....+  .+.. +.+.|.++|+..+.|
T Consensus       115 ~~~d~~~~~~~~~v~--~~P~~~lid~~G~i~~--~g~~~~~~~l~~~l~~l~~g  165 (165)
T 3ha9_A          115 MVMDDGSLVEKFNVR--SIDYIVIMDKSSNVLY--AGTTPSLGELESVIKSVQGG  165 (165)
T ss_dssp             EEECCSHHHHHTTCC--SSSEEEEEETTCCEEE--EEESCCHHHHHHHHHHC---
T ss_pred             EEeChHHHHHHhCCC--CceEEEEEcCCCcEEE--eCCCCCHHHHHHHHHHHhcC
Confidence                 2455667765  4899999997533344  5556 899999999998876

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=96.66  E-value=0.023  Score=38.45  Aligned_cols=96  Identities=14%  Similarity=0.045  Sum_probs=58.4

Q ss_pred             CCCceEEEEeecC-C-hhH-HHHHHHHHHhhcC-ceEEEEEeCCCcc---------------------hhhhhhhhCCCC
Q 031686           57 SPLKLLWLFAAVH-D-SEA-KSIFQETARAFKG-KLLFVYSQIYPKL---------------------KGQIFDYFGVTC  111 (155)
Q Consensus        57 ~~~~~v~lf~~~~-~-~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~---------------------~~~~~~~~gl~~  111 (155)
                      .++++++.|.... . -.. ...+.++++++.+ .+.++.++.+...                     ...+.+.||+..
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG  106 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence            3455666666443 1 234 6678888889876 5777777776420                     123667788864


Q ss_pred             CCcceEEEEecCCCeeecCCC--CCCHHHHHHHHHHHHcCCCccC
Q 031686          112 YTSRVIAVASIRKRKKYVLNG--ELTLSNVKSFALDFLGDKLRNQ  154 (155)
Q Consensus       112 ~~~P~v~i~~~~~~~kY~~~~--~~t~~~I~~Fi~~f~~Gkl~p~  154 (155)
                        .|++++++.+..-.+.+.+  +.+.+.+.++|+.+..+.-.++
T Consensus       107 --~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~~~~~  149 (154)
T 3kcm_A          107 --VPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSKAREGH  149 (154)
T ss_dssp             --BCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC--------
T ss_pred             --CCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHHHhhhcc
Confidence              8999999875333444444  4578899999999877655443

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=96.60  E-value=0.0035  Score=41.95  Aligned_cols=94  Identities=12%  Similarity=0.022  Sum_probs=63.2

Q ss_pred             EecC-CCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhh----hhhhhCCCCCCcc
Q 031686           44 ITYS-RETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQ----IFDYFGVTCYTSR  115 (155)
Q Consensus        44 ~e~~-~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~----~~~~~gl~~~~~P  115 (155)
                      .+++ .+.++.+.+.+.|.++.|...-  .... ...|.+.+.+  +++.|+.+|.+.  ++.    +.+.||+.. ..|
T Consensus         9 ~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~v~~~~vdVde--~r~~Sn~IA~~~~V~h-~sP   83 (112)
T 3iv4_A            9 IKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE--RDMDGYYLIVQQ--ERDLSDYIAKKTNVKH-ESP   83 (112)
T ss_dssp             EECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH--HTCCEEEEEGGG--GHHHHHHHHHHHTCCC-CSS
T ss_pred             eecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc--CCceEEEEEeec--CchhhHHHHHHhCCcc-CCC
Confidence            3443 3557777777666666665542  2444 6677777774  578999999986  433    789999973 379


Q ss_pred             eEEEEecCCCeeecCC-CCCCHHHHHHHH
Q 031686          116 VIAVASIRKRKKYVLN-GELTLSNVKSFA  143 (155)
Q Consensus       116 ~v~i~~~~~~~kY~~~-~~~t~~~I~~Fi  143 (155)
                      ++.++.. +...|.-. +.++.+.|.+++
T Consensus        84 q~il~k~-G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           84 QAFYFVN-GEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             EEEEEET-TEEEEEEEGGGCSHHHHHHHT
T ss_pred             eEEEEEC-CEEEEEeeccccCHHHHHHhh
Confidence            9999874 22345422 579999988765

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=96.51  E-value=0.029  Score=39.35  Aligned_cols=92  Identities=11%  Similarity=0.049  Sum_probs=58.4

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-e------EEEEEeCCC-c--chhhhhhhhCC---------------
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-L------LFVYSQIYP-K--LKGQIFDYFGV---------------  109 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i------~F~~vd~~~-~--~~~~~~~~~gl---------------  109 (155)
                      ++++++.|....  .-.. ...+.+++++++++ +      .|+.++.+. .  ...++++.+|+               
T Consensus        59 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  138 (183)
T 3lwa_A           59 NQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAAS  138 (183)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGGG
T ss_pred             CCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHHH
Confidence            445566666432  1234 66788888888754 6      888887764 1  12333333343               


Q ss_pred             ----CCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcC
Q 031686          110 ----TCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus       110 ----~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                          ....+|..++++.+....+.+.+..+.+.|.++|+.+++.
T Consensus       139 ~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~  182 (183)
T 3lwa_A          139 LGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVDE  182 (183)
T ss_dssp             TTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHHHC
T ss_pred             hccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhc
Confidence                2235899889987543455556778999999999988753

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=96.30  E-value=0.063  Score=36.40  Aligned_cols=91  Identities=9%  Similarity=0.030  Sum_probs=59.1

Q ss_pred             CCceEEEEeecC-C--hhH-HHHHHHHHHhhcCc-eEEEEEeCC-------C-------------------cchhh----
Q 031686           58 PLKLLWLFAAVH-D--SEA-KSIFQETARAFKGK-LLFVYSQIY-------P-------------------KLKGQ----  102 (155)
Q Consensus        58 ~~~~v~lf~~~~-~--~~~-~~~~~~vA~~~~~~-i~F~~vd~~-------~-------------------~~~~~----  102 (155)
                      ++++++.|.... .  ..+ ...+.+++++++++ +.|+.++.+       .                   .....    
T Consensus        30 gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  109 (160)
T 3lor_A           30 GKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRI  109 (160)
T ss_dssp             TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCSS
T ss_pred             CCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccchh
Confidence            445566665442 1  232 45677788888764 777777642       0                   00112    


Q ss_pred             --hhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCC
Q 031686          103 --IFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       103 --~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                        +.+.||+..  .|++.+++.+..-.+.+.|..+.+.|.+.|+..++.+
T Consensus       110 ~~~~~~~~v~~--~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~~  157 (160)
T 3lor_A          110 PSTMKKYRLEG--TPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSET  157 (160)
T ss_dssp             CHHHHHTTCCS--SSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTCC
T ss_pred             hhHHHhcccCc--cceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhcc
Confidence              667788764  8999999875433555567789999999999998753

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=96.30  E-value=0.0072  Score=44.69  Aligned_cols=99  Identities=11%  Similarity=0.038  Sum_probs=68.4

Q ss_pred             CCCeEec-CCCchhhhhcCC---CceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCC
Q 031686           40 IPPMITY-SRETTPLILNSP---LKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCY  112 (155)
Q Consensus        40 ~P~v~e~-~~~~~~~i~~~~---~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~  112 (155)
                      +..|.++ +.+++.......   .++++.|+...  .-.. ...+.++|++|. .+.|+.+|.+   ...+.+.|++.. 
T Consensus        98 ~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~~---~~~l~~~~~i~~-  172 (217)
T 2trc_P           98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRAS---NTGAGDRFSSDV-  172 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHH---HHTCSTTSCGGG-
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEECC---cHHHHHHCCCCC-
Confidence            4567888 677777766433   45666666553  2345 778899999985 7999999987   356777788764 


Q ss_pred             CcceEEEEecCCCe-eecCC-------CCCCHHHHHHHHHHH
Q 031686          113 TSRVIAVASIRKRK-KYVLN-------GELTLSNVKSFALDF  146 (155)
Q Consensus       113 ~~P~v~i~~~~~~~-kY~~~-------~~~t~~~I~~Fi~~f  146 (155)
                       +|+++++..  |+ ...+.       .+++.+.|.+|+...
T Consensus       173 -~PTl~~~~~--G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          173 -LPTLLVYKG--GELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             -CSEEEEEET--TEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             -CCEEEEEEC--CEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence             899998873  32 11121       157789999999864

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=96.26  E-value=0.051  Score=44.87  Aligned_cols=106  Identities=11%  Similarity=0.099  Sum_probs=73.1

Q ss_pred             CCeEecCCCchhhhhcCC--CceEEEEeecC--ChhH-HHHHHHHHHhhc---C-----ceEEEEEeCCCcchhhhhhhh
Q 031686           41 PPMITYSRETTPLILNSP--LKLLWLFAAVH--DSEA-KSIFQETARAFK---G-----KLLFVYSQIYPKLKGQIFDYF  107 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~~--~~~v~lf~~~~--~~~~-~~~~~~vA~~~~---~-----~i~F~~vd~~~~~~~~~~~~~  107 (155)
                      ..|.+++.+++..+....  +++++.|...-  .-.. ...+.++|+++.   +     ++.|+.+|.+.  +..+.+.|
T Consensus        23 ~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~--~~~la~~y  100 (470)
T 3qcp_A           23 SSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCAS--EVDLCRKY  100 (470)
T ss_dssp             TTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTT--CHHHHHHT
T ss_pred             CCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCC--CHHHHHHc
Confidence            358899999999887654  45666666542  1234 668899999987   2     59999999986  57889999


Q ss_pred             CCCCCCcceEEEEecCCC-eeecCCC------------CCCHHHHHHHHHHHHcCC
Q 031686          108 GVTCYTSRVIAVASIRKR-KKYVLNG------------ELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       108 gl~~~~~P~v~i~~~~~~-~kY~~~~------------~~t~~~I~~Fi~~f~~Gk  150 (155)
                      |+..  +|++++++...+ ....+.|            .++.+.+++-++.+++.+
T Consensus       101 ~V~~--~PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Link~  154 (470)
T 3qcp_A          101 DINF--VPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVNKH  154 (470)
T ss_dssp             TCCS--SCEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCc--cCeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHhhhc
Confidence            9974  899999875322 1112222            256777777777665443

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=96.24  E-value=0.011  Score=40.60  Aligned_cols=106  Identities=11%  Similarity=0.008  Sum_probs=63.8

Q ss_pred             CCeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCCC-------------------
Q 031686           41 PPMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG-KLLFVYSQIYP-------------------   97 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~-------------------   97 (155)
                      |.+...+.+.+...-..+++.++.|....  .-.. ...+.+++++++. .+.++.+..+.                   
T Consensus        21 p~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~  100 (164)
T 2h30_A           21 STMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNY  100 (164)
T ss_dssp             TTCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred             CccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCC
Confidence            34455555555443334556666666432  1233 5677778877642 35554444210                   


Q ss_pred             -------cchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686           98 -------KLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus        98 -------~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                             .....+.+.||+.  .+|++++++.+....+.+.|..+.+.|.++|+..+.
T Consensus       101 ~~~~~~~d~~~~~~~~~~v~--~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~  156 (164)
T 2h30_A          101 PKLPVVTDNGGTIAQNLNIS--VYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNA  156 (164)
T ss_dssp             TTSCEEECTTCHHHHHTTCC--SSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred             CcceEEEcCchHHHHHcCCC--ccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence                   0023556677775  389999998754344555677899999999998875

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=96.22  E-value=0.036  Score=38.55  Aligned_cols=99  Identities=8%  Similarity=0.021  Sum_probs=59.0

Q ss_pred             cCCCchhhhh----cCCCceEEEEeecC-C--hhH-HHHH--HHHHHhhcCceEEEEEeCCCcchhhh------------
Q 031686           46 YSRETTPLIL----NSPLKLLWLFAAVH-D--SEA-KSIF--QETARAFKGKLLFVYSQIYPKLKGQI------------  103 (155)
Q Consensus        46 ~~~~~~~~i~----~~~~~~v~lf~~~~-~--~~~-~~~~--~~vA~~~~~~i~F~~vd~~~~~~~~~------------  103 (155)
                      .+..++...+    ..++++++-|...- .  ... ...+  .++++.+++++.|+.+|.+..  ..+            
T Consensus        31 ~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~--~~~~~~~~~~~~~~~  108 (172)
T 3f9u_A           31 AKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNK--TPLTEPVKIMENGTE  108 (172)
T ss_dssp             CCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCC--CEEEEEEEEEETTEE
T ss_pred             cchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcc--cccchhhhhhhcchh
Confidence            3444555444    45666666665432 1  111 1111  445555555799999998752  222            


Q ss_pred             --------------hhhhCCCCCCcceEEEEecCCCeeecCCCCCC-HHHHHHHHHHHHc
Q 031686          104 --------------FDYFGVTCYTSRVIAVASIRKRKKYVLNGELT-LSNVKSFALDFLG  148 (155)
Q Consensus       104 --------------~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t-~~~I~~Fi~~f~~  148 (155)
                                    .+.||+..  +|++++++.+....+...|..+ .+.+.++++..++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~v~~--~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~  166 (172)
T 3f9u_A          109 RTLRTVGDKWSYLQRVKFGANA--QPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLE  166 (172)
T ss_dssp             EEEEEHHHHHHHHHHHHHSCCC--SSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHHHHHHcCCCC--cceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHH
Confidence                          57788874  8999999875333444457667 8888888877653

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=96.17  E-value=0.074  Score=37.52  Aligned_cols=89  Identities=10%  Similarity=0.065  Sum_probs=58.3

Q ss_pred             eEEEEeecC-C-hhH-HHHHHHHHHhhcCc-eEEEEEeCCCc---------------------------chhhhhhhhCC
Q 031686           61 LLWLFAAVH-D-SEA-KSIFQETARAFKGK-LLFVYSQIYPK---------------------------LKGQIFDYFGV  109 (155)
Q Consensus        61 ~v~lf~~~~-~-~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~---------------------------~~~~~~~~~gl  109 (155)
                      +++.|.... . -.. ...+.+++++++++ +.++.++.+..                           ....+.+.||+
T Consensus        49 vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  128 (196)
T 2ywi_A           49 TVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYDA  128 (196)
T ss_dssp             EEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHTC
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHhCC
Confidence            566665432 1 233 66777888888764 77777776310                           12355667777


Q ss_pred             CCCCcceEEEEecCCCeeec---------CCCCCCHHHHHHHHHHHHcCCC
Q 031686          110 TCYTSRVIAVASIRKRKKYV---------LNGELTLSNVKSFALDFLGDKL  151 (155)
Q Consensus       110 ~~~~~P~v~i~~~~~~~kY~---------~~~~~t~~~I~~Fi~~f~~Gkl  151 (155)
                      .  ..|++.+++.+..-.|.         +.+..+.+.|.+.|+..++++-
T Consensus       129 ~--~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~  177 (196)
T 2ywi_A          129 A--CTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRP  177 (196)
T ss_dssp             C--EESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCC
T ss_pred             C--CCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCC
Confidence            5  37999999875333443         3456789999999999998754

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=96.16  E-value=0.1  Score=38.51  Aligned_cols=115  Identities=10%  Similarity=-0.021  Sum_probs=68.1

Q ss_pred             ccCCcCHHHHHHHHHhC----C------CCCeEecCCCchhhhhcCC--CceEEEEeecCChhHHHHHHHHHHhhc--Cc
Q 031686           22 SDVSFTISVIDDFISLN----K------IPPMITYSRETTPLILNSP--LKLLWLFAAVHDSEAKSIFQETARAFK--GK   87 (155)
Q Consensus        22 y~g~~~~~~l~~fI~~~----~------~P~v~e~~~~~~~~i~~~~--~~~v~lf~~~~~~~~~~~~~~vA~~~~--~~   87 (155)
                      +.| .+.+.|.+||.+.    .      .|.+...+.+++..++...  .+++++|.+.+.    ...++++..+.  ..
T Consensus       110 ~~g-~~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~l~~~~~~~~~~~~al~f~~~~~----~~~~~~~~d~~~~~~  184 (244)
T 3q6o_A          110 VAG-ADVQTLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGS----YLAREVALDLSQHKG  184 (244)
T ss_dssp             CTT-CCHHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHHHHTHHHHCCCSEEEEEEECTTC----CHHHHHHHHTTTCTT
T ss_pred             cCC-CCHHHHHHHHHHHHHhccccCCCCCCCcccccHHHHHHHhhcCCCceEEEEEEECCc----chHHHHHHHhccCCc
Confidence            444 5778777776553    2      1233444556666666433  344566655432    13444555555  45


Q ss_pred             eEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCC-CCCCHHHHHHHHHHHH
Q 031686           88 LLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLN-GELTLSNVKSFALDFL  147 (155)
Q Consensus        88 i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~-~~~t~~~I~~Fi~~f~  147 (155)
                      +.+..++..+   ..+++.||++.  +|++++++.. ++.-.+. ..-+.+-+..|++.+.
T Consensus       185 i~v~~~~~~~---~~l~~~f~v~~--~Pslvl~~~~-g~~~~~~~~~~~r~~~~~~l~~~~  239 (244)
T 3q6o_A          185 VAVRRVLNTE---ANVVRKFGVTD--FPSCYLLFRN-GSVSRVPVLMESRSFYTAYLQRLS  239 (244)
T ss_dssp             EEEEEEETTC---HHHHHHHTCCC--SSEEEEEETT-SCEEECCCSSSSHHHHHHHHHTC-
T ss_pred             eEEEEEeCch---HHHHHHcCCCC--CCeEEEEeCC-CCeEeeccccccHHHHHHHHHhCC
Confidence            7777777663   57899999985  8999999964 3322222 2345666777666553

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=96.10  E-value=0.033  Score=42.03  Aligned_cols=99  Identities=13%  Similarity=0.017  Sum_probs=68.2

Q ss_pred             CCCeEec-CCCchhhhhcC---CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCC
Q 031686           40 IPPMITY-SRETTPLILNS---PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCY  112 (155)
Q Consensus        40 ~P~v~e~-~~~~~~~i~~~---~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~  112 (155)
                      ...|.++ +.+++......   +.++++.|+..-  .-.. ...|.++|++|.+ +.|+.+|.+.   ..+.+.|++.  
T Consensus       111 ~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~-v~f~kVd~d~---~~l~~~~~I~--  184 (245)
T 1a0r_P          111 YGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM-VKFCKIKASN---TGAGDRFSSD--  184 (245)
T ss_dssp             CCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT-SEEEEEEHHH---HCCTTSSCTT--
T ss_pred             CCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC-CEEEEEeCCc---HHHHHHCCCC--
Confidence            4467888 67777776643   445566666542  2345 6788999999875 9999999874   4567778876  


Q ss_pred             CcceEEEEecCCCee-ecCC------C-CCCHHHHHHHHHHH
Q 031686          113 TSRVIAVASIRKRKK-YVLN------G-ELTLSNVKSFALDF  146 (155)
Q Consensus       113 ~~P~v~i~~~~~~~k-Y~~~------~-~~t~~~I~~Fi~~f  146 (155)
                      .+|+++++..  |+. ..+.      + +++.+.|..|+...
T Consensus       185 ~~PTll~~~~--G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          185 VLPTLLVYKG--GELLSNFISVTEQLAEEFFTGDVESFLNEY  224 (245)
T ss_dssp             TCSEEEEEET--TEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred             CCCEEEEEEC--CEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence            4899998873  322 1111      2 47889999999875

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=96.02  E-value=0.09  Score=34.92  Aligned_cols=85  Identities=12%  Similarity=0.057  Sum_probs=51.1

Q ss_pred             CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcch--hh---------------------hhhhhCC
Q 031686           57 SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYPKLK--GQ---------------------IFDYFGV  109 (155)
Q Consensus        57 ~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~~--~~---------------------~~~~~gl  109 (155)
                      .++++++.|....  .-.. ...+.+++++++++ +.|+.++.+....  ..                     +.+.||+
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i  109 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI  109 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence            3455666666442  2233 66788888888775 8888887774211  11                     6667777


Q ss_pred             CCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHH
Q 031686          110 TCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       110 ~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      .  ..|++++++.+....+...+.   +++.++++.+
T Consensus       110 ~--~~P~~~lid~~G~i~~~~~g~---~~~~~~l~~l  141 (148)
T 3hcz_A          110 Y--ATPVLYVLDKNKVIIAKRIGY---ENLDDFLVQY  141 (148)
T ss_dssp             C--SSCEEEEECTTCBEEEESCCG---GGHHHHHHHH
T ss_pred             C--CCCEEEEECCCCcEEEecCCH---HHHHHHHHHH
Confidence            5  389999998754334444333   4455555444

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=95.93  E-value=0.21  Score=33.58  Aligned_cols=86  Identities=13%  Similarity=0.062  Sum_probs=57.8

Q ss_pred             CCceEEEEeecC--C--hhH-HHHHHHHHHhh-cCc-eEEEEEeCCCcc-----------------------hhhhhhhh
Q 031686           58 PLKLLWLFAAVH--D--SEA-KSIFQETARAF-KGK-LLFVYSQIYPKL-----------------------KGQIFDYF  107 (155)
Q Consensus        58 ~~~~v~lf~~~~--~--~~~-~~~~~~vA~~~-~~~-i~F~~vd~~~~~-----------------------~~~~~~~~  107 (155)
                      ++++++.|....  .  -.. ...+.++++++ +++ +.++.++.+...                       ...+.+.|
T Consensus        33 gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  112 (150)
T 3fw2_A           33 QKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQY  112 (150)
T ss_dssp             TSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHT
T ss_pred             CCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHHc
Confidence            455666666542  4  355 77888999998 654 888887776421                       12566778


Q ss_pred             CCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          108 GVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       108 gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      |+.  ..|++.+++.+..-.+..   .+.+.+.+.|+.+++
T Consensus       113 ~v~--~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~ll~  148 (150)
T 3fw2_A          113 SIY--KIPANILLSSDGKILAKN---LRGEELKKKIENIVE  148 (150)
T ss_dssp             TCC--SSSEEEEECTTSBEEEES---CCHHHHHHHHHHHHH
T ss_pred             CCC--ccCeEEEECCCCEEEEcc---CCHHHHHHHHHHHHh
Confidence            876  489999998753333432   378889888887764

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=95.82  E-value=0.011  Score=41.39  Aligned_cols=96  Identities=13%  Similarity=-0.015  Sum_probs=55.9

Q ss_pred             hhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhh-hhhhhCCCCCCcceEEEEecCCCe
Q 031686           51 TPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQ-IFDYFGVTCYTSRVIAVASIRKRK  126 (155)
Q Consensus        51 ~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~-~~~~~gl~~~~~P~v~i~~~~~~~  126 (155)
                      +......++++++.|...-  .-.. ...|.++++.+...+.|+.++.+.  ... ....+++....+|++++++.+...
T Consensus        39 ~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~--~~~~~~~~~~~~~~~~Pt~~~~d~~G~~  116 (164)
T 1sen_A           39 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLED--EEEPKDEDFSPDGGYIPRILFLDPSGKV  116 (164)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEG--GGSCSCGGGCTTCSCSSEEEEECTTSCB
T ss_pred             HHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecC--CchHHHHHhcccCCcCCeEEEECCCCCE
Confidence            3344445667776676442  1123 445666555544445566666553  223 566777765569999999754322


Q ss_pred             eecCCC----------CCCHHHHHHHHHHHHc
Q 031686          127 KYVLNG----------ELTLSNVKSFALDFLG  148 (155)
Q Consensus       127 kY~~~~----------~~t~~~I~~Fi~~f~~  148 (155)
                      ...+.|          ..+.+.|.++|+..++
T Consensus       117 ~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~  148 (164)
T 1sen_A          117 HPEIINENGNPSYKYFYVSAEQVVQGMKEAQE  148 (164)
T ss_dssp             CTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCccchhcccCCHHHHHHHHHHHHH
Confidence            333333          2678888888887764

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=95.72  E-value=0.076  Score=35.75  Aligned_cols=87  Identities=17%  Similarity=0.090  Sum_probs=53.7

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCc---------------------chhhhhhhhCCCCCC
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPK---------------------LKGQIFDYFGVTCYT  113 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~---------------------~~~~~~~~~gl~~~~  113 (155)
                      +++.++.|....  .-.. ...+.+++++  +++.|+.++.+..                     ....+.+.||+..  
T Consensus        42 gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--  117 (156)
T 1kng_A           42 GKVSLVNVWASWCVPCHDEAPLLTELGKD--KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYG--  117 (156)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHTTC--TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCS--
T ss_pred             CCEEEEEEEcccCHhHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCc--
Confidence            456666666543  1233 5556666655  4577777664321                     0234566778763  


Q ss_pred             cceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          114 SRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       114 ~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +|++.+++.+....+.+.|..+.+.+.++++..++
T Consensus       118 ~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~  152 (156)
T 1kng_A          118 VPETFVVGREGTIVYKLVGPITPDNLRSVLLPQME  152 (156)
T ss_dssp             SCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred             cCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHH
Confidence            89888888653334445577889999999988764

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=95.68  E-value=0.11  Score=36.46  Aligned_cols=93  Identities=12%  Similarity=0.124  Sum_probs=58.9

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCc---------------------------chhhhhhhh
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPK---------------------------LKGQIFDYF  107 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~---------------------------~~~~~~~~~  107 (155)
                      ++++++.|....  .-.. ...+.++++++++++.++.++.+..                           ....+.+.|
T Consensus        33 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  112 (188)
T 2cvb_A           33 EPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAY  112 (188)
T ss_dssp             SSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHT
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHHc
Confidence            345566666432  1233 6678888888887677777776310                           123456677


Q ss_pred             CCCCCCcceEEEEecCCCeeec--C------CCCCCHHHHHHHHHHHHcCCCc
Q 031686          108 GVTCYTSRVIAVASIRKRKKYV--L------NGELTLSNVKSFALDFLGDKLR  152 (155)
Q Consensus       108 gl~~~~~P~v~i~~~~~~~kY~--~------~~~~t~~~I~~Fi~~f~~Gkl~  152 (155)
                      |+.  ..|++.+++.+..-.|.  .      .+..+.+.|.+.|+..++|+-.
T Consensus       113 ~v~--~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~  163 (188)
T 2cvb_A          113 RAL--RTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEEP  163 (188)
T ss_dssp             TCC--EESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCCC
T ss_pred             CCC--CCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCCCC
Confidence            775  37999999865333343  1      1234788999999999988643

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=95.52  E-value=0.19  Score=35.02  Aligned_cols=94  Identities=11%  Similarity=0.006  Sum_probs=58.6

Q ss_pred             CCceEEEEeecC-C-hhH-HHHHHHHHHhhc-CceEEEEEeCCCc---chhhhhhhhCCCC-------------------
Q 031686           58 PLKLLWLFAAVH-D-SEA-KSIFQETARAFK-GKLLFVYSQIYPK---LKGQIFDYFGVTC-------------------  111 (155)
Q Consensus        58 ~~~~v~lf~~~~-~-~~~-~~~~~~vA~~~~-~~i~F~~vd~~~~---~~~~~~~~~gl~~-------------------  111 (155)
                      ++++++.|.... . -.. ...+.+++++++ ..+.++.++.+..   ....+++.+|++.                   
T Consensus        60 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  139 (186)
T 1jfu_A           60 GKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIG  139 (186)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTT
T ss_pred             CCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhcccc
Confidence            445566666432 1 234 667888888887 4577777766532   1345566666630                   


Q ss_pred             --CCcceEEEEecCCCeeecCCC--CCCHHHHHHHHHHHHcCCC
Q 031686          112 --YTSRVIAVASIRKRKKYVLNG--ELTLSNVKSFALDFLGDKL  151 (155)
Q Consensus       112 --~~~P~v~i~~~~~~~kY~~~~--~~t~~~I~~Fi~~f~~Gkl  151 (155)
                        ..+|++.+++.+..-.+.+.|  +.+.+.+.++|+..+.++.
T Consensus       140 ~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~~a  183 (186)
T 1jfu_A          140 RALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGKAA  183 (186)
T ss_dssp             CCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC---
T ss_pred             ccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhcccc
Confidence              158999999875433444444  3468899999999988753

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=95.37  E-value=0.28  Score=35.62  Aligned_cols=93  Identities=15%  Similarity=0.183  Sum_probs=61.4

Q ss_pred             CCc-eEEEEeecC-C-hhH-HHHHHHHHHhhcCc-eEEEEEeCCCc---------------------------chhhhhh
Q 031686           58 PLK-LLWLFAAVH-D-SEA-KSIFQETARAFKGK-LLFVYSQIYPK---------------------------LKGQIFD  105 (155)
Q Consensus        58 ~~~-~v~lf~~~~-~-~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~---------------------------~~~~~~~  105 (155)
                      +++ +++.|.... . -.. ...+.+++++++++ +.|+.++.+..                           ....+.+
T Consensus        58 gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  137 (218)
T 3u5r_E           58 DSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAK  137 (218)
T ss_dssp             TCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHH
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHH
Confidence            344 455565432 1 234 67888899999875 88887777411                           1245667


Q ss_pred             hhCCCCCCcceEEEEecCCCeeec--CC-------CCCCHHHHHHHHHHHHcCCCc
Q 031686          106 YFGVTCYTSRVIAVASIRKRKKYV--LN-------GELTLSNVKSFALDFLGDKLR  152 (155)
Q Consensus       106 ~~gl~~~~~P~v~i~~~~~~~kY~--~~-------~~~t~~~I~~Fi~~f~~Gkl~  152 (155)
                      .||+..  .|++.+++.+..-.|.  ++       +..+.+.|++.|+.+++|+-.
T Consensus       138 ~~~v~~--~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~~  191 (218)
T 3u5r_E          138 AYGAAC--TPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDV  191 (218)
T ss_dssp             HHTCCE--ESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCCC
T ss_pred             HcCCCC--CCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcCCCC
Confidence            788763  7999999875333442  11       246789999999999998643

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=95.36  E-value=0.051  Score=38.02  Aligned_cols=67  Identities=10%  Similarity=0.144  Sum_probs=48.7

Q ss_pred             HHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCe-eecCCCCCCHHHHHHHHHHHHc
Q 031686           79 ETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRK-KYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus        79 ~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +|++..+.+++++.+|.+..+...+++.|++..  .|++++++..+++ ...+.+ ++++.+.++++.+++
T Consensus        69 ~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~--~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l~  136 (153)
T 2dlx_A           69 AVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGD--FPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLG  136 (153)
T ss_dssp             HHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCS--SSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCC--CCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHHHHH
Confidence            455444457899999997655667889999864  8999999986442 222345 899998888888864

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=95.30  E-value=0.27  Score=40.90  Aligned_cols=94  Identities=10%  Similarity=0.039  Sum_probs=60.3

Q ss_pred             eccCCcCHHHHHHHHHhC----C------CCCeEecCCCchhhhhcCCC--ceEEEEeecCChhHHHHHHHHHHhhc--C
Q 031686           21 FSDVSFTISVIDDFISLN----K------IPPMITYSRETTPLILNSPL--KLLWLFAAVHDSEAKSIFQETARAFK--G   86 (155)
Q Consensus        21 ~y~g~~~~~~l~~fI~~~----~------~P~v~e~~~~~~~~i~~~~~--~~v~lf~~~~~~~~~~~~~~vA~~~~--~   86 (155)
                      .+.|..+.++|.+||.+.    .      .|.+..++.+++..++....  +++++|.+.+.    ...++++..+.  .
T Consensus       108 ~~~g~~~~~~L~~~l~~~l~~~~~~~P~~~p~l~~it~~~l~~~l~~~~~~~vallF~~~~s----~~~~~~~ldl~~~~  183 (519)
T 3t58_A          108 LPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDS----YLGREVTLDLSQYH  183 (519)
T ss_dssp             ECCSSCCHHHHHHHHHHHHTTCCSCCCTTCCCCSBCCHHHHTTGGGSCCCSEEEEEEECTTC----CHHHHHHHHTTTCT
T ss_pred             EecCCCCHHHHHHHHHHHHhhccccCCCCCCccCcCCHHHHHHHhccCCCCeEEEEecCCch----HHHHHHHHHhhccC
Confidence            345667888888777553    2      23345566667777776543  33555554432    13455666665  3


Q ss_pred             ceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecC
Q 031686           87 KLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIR  123 (155)
Q Consensus        87 ~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~  123 (155)
                      .+.+..++..+   ..+++.||++.  +|++++++..
T Consensus       184 ~v~v~~v~~~~---~~l~~kfgV~~--~Pslvl~~~n  215 (519)
T 3t58_A          184 AVAVRRVLNTE---SDLVNKFGVTD--FPSCYLLLRN  215 (519)
T ss_dssp             TEEEEEEETTC---HHHHHHHTCCC--SSEEEEEETT
T ss_pred             CeeEEEecCch---HHHHHHcCCCC--CCeEEEEeCC
Confidence            47777776653   57889999984  8999999864

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=95.18  E-value=0.21  Score=33.66  Aligned_cols=91  Identities=9%  Similarity=0.019  Sum_probs=58.2

Q ss_pred             CCceEEEEeecC-C--hhH-HHHHHHHHHhhcC-ceEEEEEeCCCc--------------------------chh-----
Q 031686           58 PLKLLWLFAAVH-D--SEA-KSIFQETARAFKG-KLLFVYSQIYPK--------------------------LKG-----  101 (155)
Q Consensus        58 ~~~~v~lf~~~~-~--~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~--------------------------~~~-----  101 (155)
                      ++++++.|.... .  ... ...+.++++++++ .+.|+.++.+..                          ...     
T Consensus        28 gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  107 (158)
T 3eyt_A           28 GKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMP  107 (158)
T ss_dssp             TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSSC
T ss_pred             CCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhhH
Confidence            445555565432 1  222 4567777888874 477777664200                          001     


Q ss_pred             hhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCC
Q 031686          102 QIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       102 ~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      .+.+.||+..  .|++.+++.+..-.+...|..+.+.|.+.|+..++.+
T Consensus       108 ~~~~~~~v~~--~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~~  154 (158)
T 3eyt_A          108 RTMAAYQMRG--TPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLGEA  154 (158)
T ss_dssp             HHHHHTTCCS--SSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHTSC
T ss_pred             HHHHHcCCCC--CCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhccC
Confidence            4677888754  8999999875333455557789999999999998764

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=95.15  E-value=0.35  Score=32.73  Aligned_cols=86  Identities=15%  Similarity=0.179  Sum_probs=54.3

Q ss_pred             CCCceEEEEeecC-C-hhH-HHHHHHHHHhhc-CceEEEEEeCCCc-----------------chhhhhhhhCCCCCCcc
Q 031686           57 SPLKLLWLFAAVH-D-SEA-KSIFQETARAFK-GKLLFVYSQIYPK-----------------LKGQIFDYFGVTCYTSR  115 (155)
Q Consensus        57 ~~~~~v~lf~~~~-~-~~~-~~~~~~vA~~~~-~~i~F~~vd~~~~-----------------~~~~~~~~~gl~~~~~P  115 (155)
                      .++++++.|.... . -.. ...+.++++++. ..+.|+.++.+..                 ....+.+.||+..  .|
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--~P  117 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANR--LP  117 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCS--SS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCC--cc
Confidence            3456666676443 1 234 677888999987 5688888887641                 1246678888864  89


Q ss_pred             eEEEEecCCCeeecCCC--CCCHHHHHHHHH
Q 031686          116 VIAVASIRKRKKYVLNG--ELTLSNVKSFAL  144 (155)
Q Consensus       116 ~v~i~~~~~~~kY~~~~--~~t~~~I~~Fi~  144 (155)
                      ++++++.+..-.+.+.|  +.+..++.+.+.
T Consensus       118 ~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~  148 (158)
T 3hdc_A          118 DTFIVDRKGIIRQRVTGGIEWDAPKVVSYLK  148 (158)
T ss_dssp             EEEEECTTSBEEEEEESCCCTTSHHHHHHHH
T ss_pred             eEEEEcCCCCEEEEEeCCCccchHHHHHHHH
Confidence            99999875433444444  345555555444

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=94.81  E-value=0.18  Score=29.74  Aligned_cols=57  Identities=14%  Similarity=0.083  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCee-ecCCCCC-CHHHHHHHH
Q 031686           74 KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKK-YVLNGEL-TLSNVKSFA  143 (155)
Q Consensus        74 ~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~k-Y~~~~~~-t~~~I~~Fi  143 (155)
                      ...+.++++++.+++.++.+| +    ..+.+.+|+..  .|++++ +   |+. +.  |.. +.+.|.+++
T Consensus        18 ~~~l~~~~~~~~~~~~~~~v~-~----~~~~~~~~v~~--~Pt~~~-~---G~~~~~--G~~~~~~~l~~~l   76 (77)
T 1ilo_A           18 EKNAREAVKELGIDAEFEKIK-E----MDQILEAGLTA--LPGLAV-D---GELKIM--GRVASKEEIKKIL   76 (77)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEC-S----HHHHHHHTCSS--SSCEEE-T---TEEEEC--SSCCCHHHHHHHC
T ss_pred             HHHHHHHHHHcCCceEEEEec-C----HHHHHHCCCCc--CCEEEE-C---CEEEEc--CCCCCHHHHHHHh
Confidence            677889999998889999988 2    46778899874  899988 3   432 32  665 888888875

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=94.70  E-value=0.16  Score=34.85  Aligned_cols=87  Identities=11%  Similarity=-0.028  Sum_probs=51.8

Q ss_pred             CCCceEEEEeecC-C-hhH-HHHHHHHHHhhcCceEEEEEeCCC---------------------cchhhhhhhhCCCCC
Q 031686           57 SPLKLLWLFAAVH-D-SEA-KSIFQETARAFKGKLLFVYSQIYP---------------------KLKGQIFDYFGVTCY  112 (155)
Q Consensus        57 ~~~~~v~lf~~~~-~-~~~-~~~~~~vA~~~~~~i~F~~vd~~~---------------------~~~~~~~~~~gl~~~  112 (155)
                      .++++++.|.... . -.. ...+.+++++   ++.++.++.+.                     .....+.+.||+.. 
T Consensus        50 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-  125 (168)
T 2b1k_A           50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG-  125 (168)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCS-
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccc-
Confidence            4556666666432 1 123 5556666665   45555554221                     01235667778764 


Q ss_pred             CcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          113 TSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       113 ~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                       .|+..+++.+....+.+.|..+.+.+.++++..++
T Consensus       126 -~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  160 (168)
T 2b1k_A          126 -APETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWE  160 (168)
T ss_dssp             -SSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHHH
T ss_pred             -cCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence             89888888653334555567888888888887654

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=94.00  E-value=0.4  Score=37.90  Aligned_cols=89  Identities=10%  Similarity=-0.020  Sum_probs=59.1

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCc-------------------------chhhhhhhhC
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKG-KLLFVYSQIYPK-------------------------LKGQIFDYFG  108 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~-------------------------~~~~~~~~~g  108 (155)
                      ++++++.|....  .-.. ...+.++++++++ .+.++.++.+..                         ....+.+.||
T Consensus        82 GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~yg  161 (352)
T 2hyx_A           82 GKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNYR  161 (352)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHTT
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHcC
Confidence            455666666432  1234 6678888999876 488888765320                         0134566677


Q ss_pred             CCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          109 VTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       109 l~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +.  ..|++.+++.+....+.+.+..+.+.|.++|+..+.
T Consensus       162 V~--~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL~  199 (352)
T 2hyx_A          162 NR--YWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLN  199 (352)
T ss_dssp             CC--EESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHHH
T ss_pred             CC--ccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHh
Confidence            75  379999998754334555566789999999998875

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=93.96  E-value=0.53  Score=31.77  Aligned_cols=89  Identities=12%  Similarity=0.086  Sum_probs=52.7

Q ss_pred             CCceEEEEeecC--C-hhH-HHHHHHHHHhhcC-----ceEEEEEeCCCc-c-------------------------hhh
Q 031686           58 PLKLLWLFAAVH--D-SEA-KSIFQETARAFKG-----KLLFVYSQIYPK-L-------------------------KGQ  102 (155)
Q Consensus        58 ~~~~v~lf~~~~--~-~~~-~~~~~~vA~~~~~-----~i~F~~vd~~~~-~-------------------------~~~  102 (155)
                      ++++++.|....  . -.. ...+.++++++++     ++.++.++.+.. +                         ...
T Consensus        23 gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  102 (164)
T 2ggt_A           23 GQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQ  102 (164)
T ss_dssp             TCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHHH
T ss_pred             CCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence            345555555432  2 234 6667777777653     566666555421 0                         113


Q ss_pred             hhhhhCCCCCCcc---------------eEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          103 IFDYFGVTCYTSR---------------VIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       103 ~~~~~gl~~~~~P---------------~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +.+.||+..  .|               ++.+++.+..-.+.+.+..+.+.|.+.|+..+.
T Consensus       103 ~~~~~~v~~--~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  161 (164)
T 2ggt_A          103 VARAYRVYY--SPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  161 (164)
T ss_dssp             HHHTTTCCE--EEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHG
T ss_pred             HHHhcCeEE--EecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            556677653  46               788888754334444566788999999988764

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=93.57  E-value=0.69  Score=32.64  Aligned_cols=97  Identities=13%  Similarity=0.094  Sum_probs=55.4

Q ss_pred             CCceEEEEe-ecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCcc-----------------------hhhhhhhhCC
Q 031686           58 PLKLLWLFA-AVH--DSEA-KSIFQETARAFKG-KLLFVYSQIYPKL-----------------------KGQIFDYFGV  109 (155)
Q Consensus        58 ~~~~v~lf~-~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~-----------------------~~~~~~~~gl  109 (155)
                      ++++++.|. ...  .-.. ...+.++++++++ .+.++.++.+...                       ...+.+.||+
T Consensus        45 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  124 (195)
T 2bmx_A           45 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGV  124 (195)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTC
T ss_pred             CCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhCC
Confidence            345566665 322  1233 6677777777765 4777776665310                       1245566777


Q ss_pred             CC---CCcceEEEEecCCCeeecCCC----CCCHHHHHHHHHHHHcCCCccC
Q 031686          110 TC---YTSRVIAVASIRKRKKYVLNG----ELTLSNVKSFALDFLGDKLRNQ  154 (155)
Q Consensus       110 ~~---~~~P~v~i~~~~~~~kY~~~~----~~t~~~I~~Fi~~f~~Gkl~p~  154 (155)
                      ..   ...|++.+++.+..-.+...+    +-+.+.|.+.|+.+..|...|-
T Consensus       125 ~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~~~~p~  176 (195)
T 2bmx_A          125 LNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQSDELCAS  176 (195)
T ss_dssp             BCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHC------
T ss_pred             cccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhCCCcCc
Confidence            51   147999999875332333322    2378999999999998877663

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=93.52  E-value=0.48  Score=31.19  Aligned_cols=85  Identities=9%  Similarity=0.086  Sum_probs=47.9

Q ss_pred             CCceEEEEeecC-C-hhH-HHHHHH---HHHhhcC-ceEEEEEeCCCcc--hhhh--------------------hhhhC
Q 031686           58 PLKLLWLFAAVH-D-SEA-KSIFQE---TARAFKG-KLLFVYSQIYPKL--KGQI--------------------FDYFG  108 (155)
Q Consensus        58 ~~~~v~lf~~~~-~-~~~-~~~~~~---vA~~~~~-~i~F~~vd~~~~~--~~~~--------------------~~~~g  108 (155)
                      ++++++.|.... . -.. ...+.+   +++++++ .+.++.++.+...  ....                    .+.||
T Consensus        27 gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  106 (142)
T 3ewl_A           27 AQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYD  106 (142)
T ss_dssp             CSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCSC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHcC
Confidence            445566665432 1 122 333444   6777654 3777777766321  1111                    22566


Q ss_pred             CCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHH
Q 031686          109 VTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       109 l~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      +.  ..|++.+++.+..-.+   +..+.++|++++++..
T Consensus       107 v~--~~P~~~lid~~G~i~~---~~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A          107 IR--ATPTIYLLDGRKRVIL---KDTSMEQLIDYLATQA  140 (142)
T ss_dssp             CC--SSSEEEEECTTCBEEE---CSCCHHHHHHHHHC--
T ss_pred             CC--CCCeEEEECCCCCEEe---cCCCHHHHHHHHHHHc
Confidence            65  4899999986532233   3578999999998754

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=93.31  E-value=1.2  Score=30.00  Aligned_cols=88  Identities=10%  Similarity=0.040  Sum_probs=53.0

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcch------------------h---hhhhhhCCCCC
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYPKLK------------------G---QIFDYFGVTCY  112 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~~------------------~---~~~~~~gl~~~  112 (155)
                      ++++++.|....  .-.. ...+.+++++++++ +.++.++.+....                  .   .+.+.||+.. 
T Consensus        35 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~-  113 (152)
T 2lrt_A           35 GKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTN-  113 (152)
T ss_dssp             GSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCS-
T ss_pred             CCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCccc-
Confidence            345666666442  1234 67788888888765 8888887764210                  0   1667788863 


Q ss_pred             CcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCC
Q 031686          113 TSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       113 ~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                       .|++++++.+..-.+...|..+   +++-+..-++|.
T Consensus       114 -~P~~~lid~~G~i~~~~~g~~~---~e~~~~~~~~~~  147 (152)
T 2lrt_A          114 -LPSVFLVNRNNELSARGENIKD---LDEAIKKLLEGH  147 (152)
T ss_dssp             -CSEEEEEETTTEEEEETTTCSC---HHHHHHHHHGGG
T ss_pred             -CceEEEECCCCeEEEecCCHHH---HHHHHHHHHhcc
Confidence             8999999975333444444333   444445555553

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=92.93  E-value=1.4  Score=29.79  Aligned_cols=91  Identities=12%  Similarity=0.058  Sum_probs=54.6

Q ss_pred             CCceEEEEeecC--C-hhH-HHHHHHHHHhhc-----CceEEEEEeCCCc-c-------------------------hhh
Q 031686           58 PLKLLWLFAAVH--D-SEA-KSIFQETARAFK-----GKLLFVYSQIYPK-L-------------------------KGQ  102 (155)
Q Consensus        58 ~~~~v~lf~~~~--~-~~~-~~~~~~vA~~~~-----~~i~F~~vd~~~~-~-------------------------~~~  102 (155)
                      ++++++.|....  . -.. ...+.+++++++     .++.++.++.+.. +                         ...
T Consensus        26 gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~  105 (171)
T 2rli_A           26 GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQ  105 (171)
T ss_dssp             TSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHHH
T ss_pred             CCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence            345555555442  2 244 667788888774     3677776665520 0                         124


Q ss_pred             hhhhhCCCCC-------------CcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          103 IFDYFGVTCY-------------TSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       103 ~~~~~gl~~~-------------~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +.+.||+...             ..|++.+++.+..-.+.+.+..+.+.|.+.|+..+.
T Consensus       106 ~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  164 (171)
T 2rli_A          106 ASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMA  164 (171)
T ss_dssp             HHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             HHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            5667777521             123888888754334444566788889888888765

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=92.03  E-value=1.4  Score=29.65  Aligned_cols=37  Identities=5%  Similarity=-0.015  Sum_probs=27.4

Q ss_pred             cceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCC
Q 031686          114 SRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       114 ~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      .|...+++.+..-.+.+.+..+++.|.+.|+..+++|
T Consensus       133 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~k  169 (169)
T 2v1m_A          133 NFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLEKK  169 (169)
T ss_dssp             TTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHHHCC
T ss_pred             cceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHhccC
Confidence            4788888875433455566778899999999988764

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=91.63  E-value=0.69  Score=32.12  Aligned_cols=45  Identities=7%  Similarity=-0.083  Sum_probs=32.2

Q ss_pred             hhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          102 QIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       102 ~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      .+.+.||+.  ..|+..+++.+..-.+.+.+..+.+.+.+++..+++
T Consensus       123 ~~~~~~~v~--~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  167 (176)
T 3kh7_A          123 TLGLDLGVY--GAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQ  167 (176)
T ss_dssp             HHHHHHTCC--SSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHHH
T ss_pred             hHHHHcCCC--CCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            455667775  379999998754345555667888888888888765

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=91.39  E-value=2  Score=29.42  Aligned_cols=64  Identities=6%  Similarity=0.074  Sum_probs=42.9

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhcC--ceEEEEEeCCCcch----------------------hhhhhhhCCC
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKG--KLLFVYSQIYPKLK----------------------GQIFDYFGVT  110 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~--~i~F~~vd~~~~~~----------------------~~~~~~~gl~  110 (155)
                      ++++++.|...-  .-.. ...+.++++++++  ++.++.++.+....                      ..+.+.||+.
T Consensus        48 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~  127 (165)
T 3s9f_A           48 GKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVE  127 (165)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCC
T ss_pred             CCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCCC
Confidence            455666666432  1234 6778889999875  67777776654211                      4667788886


Q ss_pred             CCCcceEEEEecC
Q 031686          111 CYTSRVIAVASIR  123 (155)
Q Consensus       111 ~~~~P~v~i~~~~  123 (155)
                        .+|++++++.+
T Consensus       128 --~~Pt~~lid~~  138 (165)
T 3s9f_A          128 --SIPTLIGLNAD  138 (165)
T ss_dssp             --SSSEEEEEETT
T ss_pred             --CCCEEEEEeCC
Confidence              48999999964

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=91.30  E-value=2.8  Score=34.42  Aligned_cols=113  Identities=9%  Similarity=-0.050  Sum_probs=73.4

Q ss_pred             eccCCcCHHHHHHHHHh----CCCCCeEecCCCchhhhhcCCCce-EEEEeecC--ChhH-HHHHHHHHHhhcCceEEEE
Q 031686           21 FSDVSFTISVIDDFISL----NKIPPMITYSRETTPLILNSPLKL-LWLFAAVH--DSEA-KSIFQETARAFKGKLLFVY   92 (155)
Q Consensus        21 ~y~g~~~~~~l~~fI~~----~~~P~v~e~~~~~~~~i~~~~~~~-v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~   92 (155)
                      .|.|-=.-.++..||..    ...|  ..+++++.+++-+...+. +.+|....  .=.. ...+.++|.++. ++.|..
T Consensus        77 ~f~g~p~g~e~~s~~~~l~~~~~~~--~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-~v~~~~  153 (521)
T 1hyu_A           77 RFAGSPLGHEFTSLVLALLWTGGHP--SKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTA  153 (521)
T ss_dssp             EEESCCCGGGHHHHHHHHHHHTTCC--CCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEE
T ss_pred             EEeccCcchhHHHHHHHHHhhcCCC--CCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-ceEEEE
Confidence            44442223344444433    4445  567778888876655566 66665543  2234 667888888876 799999


Q ss_pred             EeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHH
Q 031686           93 SQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD  145 (155)
Q Consensus        93 vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~  145 (155)
                      +|.+.  ++++.+.+|+..  .|++.+ +   ++.. ..|..+.+.|.+++..
T Consensus       154 vd~~~--~~~~~~~~~i~s--vPt~~i-~---g~~~-~~G~~~~~~l~~~l~~  197 (521)
T 1hyu_A          154 IDGGT--FQNEITERNVMG--VPAVFV-N---GKEF-GQGRMTLTEIVAKVDT  197 (521)
T ss_dssp             EETTT--CHHHHHHTTCCS--SSEEEE-T---TEEE-EESCCCHHHHHHHHCC
T ss_pred             Eechh--hHHHHHHhCCCc--cCEEEE-C---CEEE-ecCCCCHHHHHHHHhh
Confidence            99986  688899999864  899977 3   3222 1256788888888754

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=91.25  E-value=1.8  Score=30.24  Aligned_cols=35  Identities=6%  Similarity=0.043  Sum_probs=24.7

Q ss_pred             eEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCC
Q 031686          116 VIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDK  150 (155)
Q Consensus       116 ~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gk  150 (155)
                      +..+++.+..-.+.+.+..+++.|.+.|+..++|.
T Consensus       151 ~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL~~~  185 (187)
T 3dwv_A          151 TSFLIDRDGVPVERFSPGASVKDIEEKLIPLLGSA  185 (187)
T ss_dssp             CEEEECTTSCEEEEECTTCCHHHHHHHHHHHC---
T ss_pred             eEEEECCCCCEEEEECCCCCHHHHHHHHHHHHhcC
Confidence            88888875433455566788999999999988763

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=91.15  E-value=2.8  Score=29.26  Aligned_cols=93  Identities=6%  Similarity=0.003  Sum_probs=55.4

Q ss_pred             CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCC--------c-chhhhh-hhhCCC------------
Q 031686           57 SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYP--------K-LKGQIF-DYFGVT------------  110 (155)
Q Consensus        57 ~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~--------~-~~~~~~-~~~gl~------------  110 (155)
                      .++++++.|....  .-.. ...+.+++++++++ +.++.++.+.        . ....++ +.++++            
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~  126 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  126 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence            3456666665432  2234 67788888888765 7777776541        0 122233 333221            


Q ss_pred             ---------------CCCcc------eEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcC
Q 031686          111 ---------------CYTSR------VIAVASIRKRKKYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus       111 ---------------~~~~P------~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                                     ....|      +..+++.+..-.+.+.+..+.+.|.+.|+..++.
T Consensus       127 ~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  186 (190)
T 2vup_A          127 NAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLES  186 (190)
T ss_dssp             TBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence                           01256      7888886543345556677899999999988764

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=91.04  E-value=2.5  Score=28.46  Aligned_cols=92  Identities=8%  Similarity=-0.080  Sum_probs=55.5

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCC--------c-chhhhhh-hhCCC-------------
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYP--------K-LKGQIFD-YFGVT-------------  110 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~--------~-~~~~~~~-~~gl~-------------  110 (155)
                      ++++++.|....  .-.. ...+.+++++++++ +.++.++.+.        . ....+++ .++++             
T Consensus        32 gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  111 (170)
T 2p5q_A           32 GKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGEN  111 (170)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSSTT
T ss_pred             CCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCCc
Confidence            455566665432  2234 67788888888765 7777776531        0 1222333 33321             


Q ss_pred             ----------------CCCcc---eEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcC
Q 031686          111 ----------------CYTSR---VIAVASIRKRKKYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus       111 ----------------~~~~P---~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                                      ...+|   +..+++.+..-.+.+.+..+++.|.+.|+..++.
T Consensus       112 ~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  169 (170)
T 2p5q_A          112 ASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLEI  169 (170)
T ss_dssp             BCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHTTC
T ss_pred             hHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHhhc
Confidence                            02367   8888887543345556677888999999887653

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=90.83  E-value=2.2  Score=28.00  Aligned_cols=64  Identities=11%  Similarity=0.046  Sum_probs=42.4

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhc--CceEEEEEeCCCcc----------------------hhhhhhhhCCC
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFK--GKLLFVYSQIYPKL----------------------KGQIFDYFGVT  110 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~--~~i~F~~vd~~~~~----------------------~~~~~~~~gl~  110 (155)
                      ++++++.|...-  .-.. ...+.+++++++  +++.++.++.+...                      ...+.+.||+.
T Consensus        28 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  107 (144)
T 1i5g_A           28 GKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVK  107 (144)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCCC
Confidence            445566665442  1234 667888889887  46777777766411                      24566788886


Q ss_pred             CCCcceEEEEe-cC
Q 031686          111 CYTSRVIAVAS-IR  123 (155)
Q Consensus       111 ~~~~P~v~i~~-~~  123 (155)
                        .+|++++++ .+
T Consensus       108 --~~P~~~lid~~~  119 (144)
T 1i5g_A          108 --SIPTLVGVEADS  119 (144)
T ss_dssp             --SSSEEEEEETTT
T ss_pred             --CCCEEEEEECCC
Confidence              489999998 54

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=90.67  E-value=2.5  Score=27.86  Aligned_cols=64  Identities=11%  Similarity=0.095  Sum_probs=42.2

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhc--CceEEEEEeCCCcc----------------------hhhhhhhhCCC
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFK--GKLLFVYSQIYPKL----------------------KGQIFDYFGVT  110 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~--~~i~F~~vd~~~~~----------------------~~~~~~~~gl~  110 (155)
                      ++++++.|...-  .-.. ...+.+++++++  +++.++.++.+...                      ...+.+.||+.
T Consensus        28 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  107 (146)
T 1o8x_A           28 GKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVE  107 (146)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCC
T ss_pred             CCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCCC
Confidence            445566665432  1234 667888899887  46777777766421                      24567788886


Q ss_pred             CCCcceEEEEe-cC
Q 031686          111 CYTSRVIAVAS-IR  123 (155)
Q Consensus       111 ~~~~P~v~i~~-~~  123 (155)
                      .  +|++++++ .+
T Consensus       108 ~--~Pt~~lid~~~  119 (146)
T 1o8x_A          108 S--IPTLIGVDADS  119 (146)
T ss_dssp             S--SSEEEEEETTT
T ss_pred             C--CCEEEEEECCC
Confidence            4  89999999 54

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=90.54  E-value=2.5  Score=27.63  Aligned_cols=64  Identities=11%  Similarity=0.087  Sum_probs=41.8

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhc--CceEEEEEeCCCcc----------------------hhhhhhhhCCC
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFK--GKLLFVYSQIYPKL----------------------KGQIFDYFGVT  110 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~--~~i~F~~vd~~~~~----------------------~~~~~~~~gl~  110 (155)
                      ++++++.|....  .-.. ...+.+++++++  +++.++.++.+...                      ...+.+.||+.
T Consensus        28 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  107 (144)
T 1o73_A           28 GKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVE  107 (144)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCC
T ss_pred             CCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCCC
Confidence            445566665432  1234 667888888887  46777777766421                      23566778886


Q ss_pred             CCCcceEEEEe-cC
Q 031686          111 CYTSRVIAVAS-IR  123 (155)
Q Consensus       111 ~~~~P~v~i~~-~~  123 (155)
                      .  +|++++++ .+
T Consensus       108 ~--~Pt~~lid~~~  119 (144)
T 1o73_A          108 S--IPTLITINADT  119 (144)
T ss_dssp             S--SSEEEEEETTT
T ss_pred             C--CCEEEEEECCC
Confidence            4  89999999 44

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=90.32  E-value=1.8  Score=28.48  Aligned_cols=83  Identities=11%  Similarity=0.029  Sum_probs=49.2

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCcc--h----------------------hhhhhhhCC
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKG-KLLFVYSQIYPKL--K----------------------GQIFDYFGV  109 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~--~----------------------~~~~~~~gl  109 (155)
                      ++++++.|...-  .-.. ...+.++++++++ .+.++.++.+...  .                      ..+.+.||+
T Consensus        32 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  111 (143)
T 4fo5_A           32 GRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDL  111 (143)
T ss_dssp             CCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTTG
T ss_pred             CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcCC
Confidence            345565665442  1234 6678888888874 4777777665311  1                      234455666


Q ss_pred             CCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHH
Q 031686          110 TCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD  145 (155)
Q Consensus       110 ~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~  145 (155)
                      .  ..|+..+++.+..-.+.   ..+.+++++++++
T Consensus       112 ~--~~P~~~lid~~G~i~~~---~~~~~~l~~~l~~  142 (143)
T 4fo5_A          112 R--KGFKNFLINDEGVIIAA---NVTPEKLTEILKA  142 (143)
T ss_dssp             G--GCCCEEEECTTSBEEEE---SCCHHHHHHHHTC
T ss_pred             C--CCCcEEEECCCCEEEEc---cCCHHHHHHHHHh
Confidence            5  37988888865322333   2567888887753

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=89.96  E-value=2.8  Score=27.42  Aligned_cols=82  Identities=10%  Similarity=0.004  Sum_probs=47.7

Q ss_pred             CCceEEEEeecC-C-hhH-HHHHHH---HHHhhcC-ceEEEEEeCCCcc--hhh--------------------hhhhhC
Q 031686           58 PLKLLWLFAAVH-D-SEA-KSIFQE---TARAFKG-KLLFVYSQIYPKL--KGQ--------------------IFDYFG  108 (155)
Q Consensus        58 ~~~~v~lf~~~~-~-~~~-~~~~~~---vA~~~~~-~i~F~~vd~~~~~--~~~--------------------~~~~~g  108 (155)
                      ++++++.|.... . -.. ...+.+   +++++++ .+.++.++.+...  ..+                    +.+.||
T Consensus        31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  110 (142)
T 3eur_A           31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYD  110 (142)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcC
Confidence            345566665432 1 133 556777   7777754 5777777776421  111                    244555


Q ss_pred             CCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHH
Q 031686          109 VTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFAL  144 (155)
Q Consensus       109 l~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~  144 (155)
                      +.  .+|++.+++.+..-.+.   ..+.+.|++|++
T Consensus       111 v~--~~P~~~lid~~G~i~~~---~~~~~~l~~~l~  141 (142)
T 3eur_A          111 LR--AIPTLYLLDKNKTVLLK---DATLQKVEQYLA  141 (142)
T ss_dssp             CT--TCSEEEEECTTCBEEEE---EECHHHHHHHHH
T ss_pred             CC--cCCeEEEECCCCcEEec---CCCHHHHHHHHh
Confidence            54  47999999864322332   246888998885

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=89.81  E-value=1.3  Score=30.05  Aligned_cols=88  Identities=11%  Similarity=0.131  Sum_probs=52.7

Q ss_pred             CCceEEEEeecC--C-hhH-HHHHHHHHHhhcC----ceEEEEEeCCCc-c----h---------------------hhh
Q 031686           58 PLKLLWLFAAVH--D-SEA-KSIFQETARAFKG----KLLFVYSQIYPK-L----K---------------------GQI  103 (155)
Q Consensus        58 ~~~~v~lf~~~~--~-~~~-~~~~~~vA~~~~~----~i~F~~vd~~~~-~----~---------------------~~~  103 (155)
                      ++++++.|....  . -.. ...+.++++++++    ++.++.++.+.. +    .                     ..+
T Consensus        35 gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~~  114 (172)
T 2k6v_A           35 DKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREA  114 (172)
T ss_dssp             TSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHHH
T ss_pred             CCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHHH
Confidence            445566665442  2 244 6778888888773    577777776521 0    0                     234


Q ss_pred             hhhhCCCC-------------CCcceEEEEecCCCeeecCCCCC--CHHHHHHHHHHH
Q 031686          104 FDYFGVTC-------------YTSRVIAVASIRKRKKYVLNGEL--TLSNVKSFALDF  146 (155)
Q Consensus       104 ~~~~gl~~-------------~~~P~v~i~~~~~~~kY~~~~~~--t~~~I~~Fi~~f  146 (155)
                      .+.||+..             ...|++.+++ +..-.+.+.+..  +.+.|.+.|+..
T Consensus       115 ~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          115 AQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCCCCCHHHHHHHHHHh
Confidence            45566421             2369999999 533344444444  888898888764

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=89.42  E-value=0.4  Score=31.90  Aligned_cols=58  Identities=12%  Similarity=-0.056  Sum_probs=40.5

Q ss_pred             eEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686           88 LLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus        88 i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +.++.+|.+......+...+++.  ..|++++++ +..+...+.|-..++.+.++++..+.
T Consensus        53 ~~l~~vdv~~~~~~~la~~~~V~--g~PT~i~f~-~G~ev~Ri~G~~~~~~f~~~L~~~l~  110 (116)
T 3dml_A           53 APVQRLQMRDPLPPGLELARPVT--FTPTFVLMA-GDVESGRLEGYPGEDFFWPMLARLIG  110 (116)
T ss_dssp             SCEEEEETTSCCCTTCBCSSCCC--SSSEEEEEE-TTEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCchhHHHHCCCC--CCCEEEEEE-CCEEEeeecCCCCHHHHHHHHHHHHh
Confidence            66777777752233555666775  489999998 33344556677899999999988764

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=88.71  E-value=1.4  Score=30.95  Aligned_cols=96  Identities=8%  Similarity=0.022  Sum_probs=54.8

Q ss_pred             CCceEEEEe-ecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCcc--------------------------hhhhhhh
Q 031686           58 PLKLLWLFA-AVH--DSEA-KSIFQETARAFKG-KLLFVYSQIYPKL--------------------------KGQIFDY  106 (155)
Q Consensus        58 ~~~~v~lf~-~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~--------------------------~~~~~~~  106 (155)
                      ++++++.|. ...  .-.. ...+.++++++++ .+.++.++.+...                          ...+.+.
T Consensus        33 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  112 (198)
T 1zof_A           33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRD  112 (198)
T ss_dssp             SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHH
T ss_pred             CCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHHH
Confidence            345566666 221  1123 5567777777754 3666666655310                          1345566


Q ss_pred             hCCCCC---CcceEEEEecCCCeeecCCC----CCCHHHHHHHHHHHH----cCCCcc
Q 031686          107 FGVTCY---TSRVIAVASIRKRKKYVLNG----ELTLSNVKSFALDFL----GDKLRN  153 (155)
Q Consensus       107 ~gl~~~---~~P~v~i~~~~~~~kY~~~~----~~t~~~I~~Fi~~f~----~Gkl~p  153 (155)
                      ||+...   ..|+..+++.+..-.+...+    ..+.+.|.+.|+...    .|...|
T Consensus       113 ~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~~~~~~~~p  170 (198)
T 1zof_A          113 YDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCP  170 (198)
T ss_dssp             TTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHHHHHSSCCCCC
T ss_pred             hCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHHHhhccCCccC
Confidence            776511   47999999975322333322    236788999998887    455444

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=88.60  E-value=0.77  Score=29.99  Aligned_cols=72  Identities=8%  Similarity=0.058  Sum_probs=48.0

Q ss_pred             EEEEeecC-C-hhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHH
Q 031686           62 LWLFAAVH-D-SEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSN  138 (155)
Q Consensus        62 v~lf~~~~-~-~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~  138 (155)
                      +++|.... . =.. ...+.++|.++.  +.|..+|.+.  ...+.+.+|+.   +|++++..  +|+. ...+.++++.
T Consensus        32 vv~y~~~~C~~C~~a~~~L~~l~~e~~--i~~~~vDId~--d~~l~~~ygv~---VP~l~~~~--dG~~-v~~g~~~~~~  101 (107)
T 2fgx_A           32 LVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDG--NEHLTRLYNDR---VPVLFAVN--EDKE-LCHYFLDSDV  101 (107)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHSC--CCCEEEETTT--CHHHHHHSTTS---CSEEEETT--TTEE-EECSSCCCHH
T ss_pred             EEEEeCCCChhHHHHHHHHHHHHHhcC--CeEEEEECCC--CHHHHHHhCCC---CceEEEEE--CCEE-EEecCCCHHH
Confidence            55665443 1 134 667778887764  8888999985  45677888873   89886543  2332 2235688899


Q ss_pred             HHHHH
Q 031686          139 VKSFA  143 (155)
Q Consensus       139 I~~Fi  143 (155)
                      |++|+
T Consensus       102 L~~~L  106 (107)
T 2fgx_A          102 IGAYL  106 (107)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99887

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=88.54  E-value=2.4  Score=29.46  Aligned_cols=91  Identities=10%  Similarity=-0.117  Sum_probs=54.3

Q ss_pred             CCceEEEEe-ecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCcc-----------------------hhhhhhhhCC
Q 031686           58 PLKLLWLFA-AVH--DSEA-KSIFQETARAFKG-KLLFVYSQIYPKL-----------------------KGQIFDYFGV  109 (155)
Q Consensus        58 ~~~~v~lf~-~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~-----------------------~~~~~~~~gl  109 (155)
                      ++++++.|. ...  .-.. ...+.++++++++ .+.++.++.+...                       ...+.+.||+
T Consensus        31 gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  110 (187)
T 1we0_A           31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDV  110 (187)
T ss_dssp             SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTC
T ss_pred             CCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhCC
Confidence            445566666 321  1233 6677777777764 4677776665310                       2345567777


Q ss_pred             CCC----CcceEEEEecCCCeeecCCC----CCCHHHHHHHHHHHHc
Q 031686          110 TCY----TSRVIAVASIRKRKKYVLNG----ELTLSNVKSFALDFLG  148 (155)
Q Consensus       110 ~~~----~~P~v~i~~~~~~~kY~~~~----~~t~~~I~~Fi~~f~~  148 (155)
                      ...    ..|++.+++.+..-.+...+    +-+.+.|.+.|+.+..
T Consensus       111 ~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  157 (187)
T 1we0_A          111 LNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQY  157 (187)
T ss_dssp             EETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred             CcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            511    47999999875332333222    2367888888888775

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=87.76  E-value=2.4  Score=26.23  Aligned_cols=50  Identities=8%  Similarity=0.067  Sum_probs=34.9

Q ss_pred             EEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcC
Q 031686           90 FVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus        90 F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                      |..+|.+.  .+.+.+.+|+.   +|++.+  . +|+..  .+.++++.|+++++.++..
T Consensus        29 ~~~vdid~--~~~l~~~~g~~---vPtl~~--~-~G~~v--~g~~~~~~L~~~l~~~~~~   78 (87)
T 1ttz_A           29 FFSVFIDD--DAALESAYGLR---VPVLRD--P-MGREL--DWPFDAPRLRAWLDAAPHA   78 (87)
T ss_dssp             EEEEECTT--CHHHHHHHTTT---CSEEEC--T-TCCEE--ESCCCHHHHHHHHHTCC--
T ss_pred             eEEEECCC--CHHHHHHhCCC---cCeEEE--E-CCEEE--eCCCCHHHHHHHHHHHHHH
Confidence            67788885  46788888873   898876  2 23322  1568899999999876654

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=87.57  E-value=1.2  Score=31.27  Aligned_cols=88  Identities=7%  Similarity=-0.050  Sum_probs=49.2

Q ss_pred             ceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCC-CCCcceEEEEecCCCe--eecCCCC
Q 031686           60 KLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVT-CYTSRVIAVASIRKRK--KYVLNGE  133 (155)
Q Consensus        60 ~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~-~~~~P~v~i~~~~~~~--kY~~~~~  133 (155)
                      +.++.|...-  +-.. ...+.++|+++. ++.|+.++.+.  ...+++.|+-. ...+|++++++.....  .+.....
T Consensus        56 ~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-~v~~~~v~~d~--~~~~~~~~~~~~v~~iPt~i~~~~~G~~~~~~g~~p~  132 (167)
T 1z6n_A           56 YRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGR--AEDDLRQRLALERIAIPLVLVLDEEFNLLGRFVERPQ  132 (167)
T ss_dssp             EEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHH--HHHHTTTTTTCSSCCSSEEEEECTTCCEEEEEESSCH
T ss_pred             EEEEEEECCCChhHHHHHHHHHHHHHHCC-CcEEEEEECCC--CHHHHHHHHHcCCCCcCeEEEECCCCCEEEEEcCCCH
Confidence            3355554331  2234 667888888875 68899998875  45666666511 1358999999853221  2211011


Q ss_pred             CCHHHHHHHHHHHHcCC
Q 031686          134 LTLSNVKSFALDFLGDK  150 (155)
Q Consensus       134 ~t~~~I~~Fi~~f~~Gk  150 (155)
                      -..+.+.++...|.+|.
T Consensus       133 ~~~~~i~~~~~~~~~~~  149 (167)
T 1z6n_A          133 AVLDGGPQALAAYKAGD  149 (167)
T ss_dssp             HHHHHCHHHHHHHHTTT
T ss_pred             HHHHhHHHHHHHHHccc
Confidence            11234445566666664

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=87.32  E-value=5  Score=26.98  Aligned_cols=87  Identities=11%  Similarity=0.112  Sum_probs=49.2

Q ss_pred             eEEEEe-ecC-C-hhH-HHHHHHHHHhhcCc-eEEEEEeCCCc-------------------chhhhhhhhCCCC--CCc
Q 031686           61 LLWLFA-AVH-D-SEA-KSIFQETARAFKGK-LLFVYSQIYPK-------------------LKGQIFDYFGVTC--YTS  114 (155)
Q Consensus        61 ~v~lf~-~~~-~-~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~-------------------~~~~~~~~~gl~~--~~~  114 (155)
                      +++.|. ... . -.. ...+.+++++++++ +.++.++.+..                   ....+.+.||+.+  ...
T Consensus        32 vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~  111 (161)
T 3drn_A           32 IVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGFILPA  111 (161)
T ss_dssp             EEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCSSSCC
T ss_pred             EEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCcCccc
Confidence            566665 222 1 233 66777788888754 66766666521                   1235667788763  237


Q ss_pred             ceEEEEecCCCeeecCCC----CCCHHHHHHHHHHHH
Q 031686          115 RVIAVASIRKRKKYVLNG----ELTLSNVKSFALDFL  147 (155)
Q Consensus       115 P~v~i~~~~~~~kY~~~~----~~t~~~I~~Fi~~f~  147 (155)
                      |+..+++.+..-.+...+    +-..+.+.+.++...
T Consensus       112 P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l~  148 (161)
T 3drn_A          112 RITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIK  148 (161)
T ss_dssp             CEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHHhh
Confidence            999999975333333333    223445666665554

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=87.24  E-value=5.2  Score=27.13  Aligned_cols=33  Identities=6%  Similarity=-0.080  Sum_probs=24.6

Q ss_pred             eEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          116 VIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       116 ~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +..+++.+..-.+.+.+..+.+.|.+.|+..++
T Consensus       136 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (171)
T 3cmi_A          136 EKFLVDKKGKVYERYSSLTKPSSLSETIEELLK  168 (171)
T ss_dssp             CEEEECSSSCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred             eEEEECCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence            888888754334555667788999999988875

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=85.88  E-value=2.5  Score=29.23  Aligned_cols=32  Identities=0%  Similarity=-0.347  Sum_probs=21.8

Q ss_pred             cceEEEEecCCCeeecCCCCCCHHHHHHHHHH
Q 031686          114 SRVIAVASIRKRKKYVLNGELTLSNVKSFALD  145 (155)
Q Consensus       114 ~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~  145 (155)
                      .|+..+++.+..-.+.+.+..+++.|.+.|+.
T Consensus       150 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~  181 (183)
T 2obi_A          150 NFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPH  181 (183)
T ss_dssp             TTCEEEECTTSCEEEEECTTSCTHHHHTTSGG
T ss_pred             cceEEEECCCCCEEEEeCCCCCHHHHHHHHHH
Confidence            48888998754334555666778888776654

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=85.68  E-value=6.2  Score=26.53  Aligned_cols=38  Identities=11%  Similarity=-0.080  Sum_probs=25.1

Q ss_pred             CcceEEEEecCCCeeecCCCC--CCHHHHHHHHHHHHcCC
Q 031686          113 TSRVIAVASIRKRKKYVLNGE--LTLSNVKSFALDFLGDK  150 (155)
Q Consensus       113 ~~P~v~i~~~~~~~kY~~~~~--~t~~~I~~Fi~~f~~Gk  150 (155)
                      ..|+..+++.+..-.+.+.+.  .+.+.|.+.|+..++.|
T Consensus       135 ~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~k  174 (174)
T 1xzo_A          135 HQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSASTLK  174 (174)
T ss_dssp             SCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHTCCC
T ss_pred             eeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHHhcC
Confidence            368888888653323333332  35889999999887654

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=85.69  E-value=0.16  Score=34.45  Aligned_cols=50  Identities=6%  Similarity=-0.083  Sum_probs=31.0

Q ss_pred             hhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCCCcc
Q 031686          103 IFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKLRN  153 (155)
Q Consensus       103 ~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gkl~p  153 (155)
                      +.+.||+....+|++++++.+....+...+ .+++++.++++.+.++.-++
T Consensus       104 ~~~~~~~~~~~~P~~~lid~~G~i~~~~~g-~~~~~l~~~l~~l~~~~~~~  153 (159)
T 2ls5_A          104 IFAKYALRDAGITRNVLIDREGKIVKLTRL-YNEEEFASLVQQINEMLKEG  153 (159)
Confidence            344455433348999988864322333333 56778999998887765544

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=85.31  E-value=3.6  Score=28.40  Aligned_cols=90  Identities=10%  Similarity=-0.010  Sum_probs=52.8

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCC---------cchhhhhhh-hCCC----------C--
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYP---------KLKGQIFDY-FGVT----------C--  111 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~---------~~~~~~~~~-~gl~----------~--  111 (155)
                      ++++++.|....  .-.. ...|.+++++++++ +.++.++.+.         ....++++. +|++          +  
T Consensus        49 Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~~  128 (181)
T 2p31_A           49 GSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTG  128 (181)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTT
T ss_pred             CCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCcc
Confidence            445566665432  2233 66788899998765 7777776542         012233343 4422          0  


Q ss_pred             ---------CCcc-------eEEEEecCCCeeecCCCCCCHHHHHHHHHHHH
Q 031686          112 ---------YTSR-------VIAVASIRKRKKYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       112 ---------~~~P-------~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                               ...|       +..+++.+..-.+.+.+..+++.|.+.|+..+
T Consensus       129 ~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  180 (181)
T 2p31_A          129 AHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV  180 (181)
T ss_dssp             SCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred             chhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence                     1246       77788865433445556778899998887654

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=84.54  E-value=1.8  Score=30.67  Aligned_cols=72  Identities=8%  Similarity=0.016  Sum_probs=44.7

Q ss_pred             CCchhhhhcCCCceEEEEeecC-Ch-hH--HHHH--HHHHHhhcCceEEEEEeCCCcchhhhhhhh--------CCCCCC
Q 031686           48 RETTPLILNSPLKLLWLFAAVH-DS-EA--KSIF--QETARAFKGKLLFVYSQIYPKLKGQIFDYF--------GVTCYT  113 (155)
Q Consensus        48 ~~~~~~i~~~~~~~v~lf~~~~-~~-~~--~~~~--~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~--------gl~~~~  113 (155)
                      .+.+......++|+++-|.-.- .. ..  .+.|  .++|+.+.++++++.+|.+.  ...+.+.+        |+.+  
T Consensus        29 ~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de--~~~l~~~y~~~~q~~~gv~g--  104 (173)
T 3ira_A           29 EEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREE--RPDIDNIYMTVCQIILGRGG--  104 (173)
T ss_dssp             HHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTT--CHHHHHHHHHHHHHHHSCCC--
T ss_pred             HHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcc--cCcHHHHHHHHHHHHcCCCC--
Confidence            4556666666777766665331 10 11  2222  35666666679999999985  34554444        7754  


Q ss_pred             cceEEEEecC
Q 031686          114 SRVIAVASIR  123 (155)
Q Consensus       114 ~P~v~i~~~~  123 (155)
                      .|++++++.+
T Consensus       105 ~Pt~v~l~~d  114 (173)
T 3ira_A          105 WPLNIIMTPG  114 (173)
T ss_dssp             SSEEEEECTT
T ss_pred             CcceeeECCC
Confidence            8999999865

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=83.82  E-value=3.5  Score=28.28  Aligned_cols=56  Identities=5%  Similarity=-0.110  Sum_probs=31.4

Q ss_pred             ceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCC-------CCHHHHHHHHHHHH
Q 031686           87 KLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGE-------LTLSNVKSFALDFL  147 (155)
Q Consensus        87 ~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~-------~t~~~I~~Fi~~f~  147 (155)
                      .++.+-+|.+.   ......+++.  .+|++++++.++...+...|.       .+++++.++++...
T Consensus        79 ~fv~V~vD~e~---~~~~~~~~v~--~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~  141 (151)
T 3ph9_A           79 KFIMLNLMHET---TDKNLSPDGQ--YVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMK  141 (151)
T ss_dssp             TCEEEEESSCC---SCGGGCTTCC--CSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHH
T ss_pred             CeEEEEecCCc---hhhHhhcCCC--CCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHH
Confidence            45555555332   2344555654  489999998643334444342       55666666666554

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=83.63  E-value=2.6  Score=26.87  Aligned_cols=71  Identities=14%  Similarity=0.142  Sum_probs=43.7

Q ss_pred             EEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCc--chhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCH
Q 031686           62 LWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPK--LKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTL  136 (155)
Q Consensus        62 v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~--~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~  136 (155)
                      ++.|...-  .-.. ...|.++|+++.    ++-++.+..  ....+.+.||+..  +|++++ +   |+.|  .|..+.
T Consensus        16 vV~F~A~WC~~C~~~~p~~~~~a~~~~----~v~~~~~~~~~~~~~l~~~~~V~~--~PT~~i-~---G~~~--~G~~~~   83 (106)
T 3kp8_A           16 GTMYGAYWCPHCQDQKELFGAAFDQVP----YVECSPNGPGTPQAQECTEAGITS--YPTWII-N---GRTY--TGVRSL   83 (106)
T ss_dssp             CEEEECTTCHHHHHHHHHHGGGGGGSC----EEESCTTCTTSCCCHHHHHTTCCS--SSEEEE-T---TEEE--ESCCCH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHhCC----EEEEecccccchhHHHHHHcCCeE--eCEEEE-C---CEEe--cCCCCH
Confidence            55555432  1233 556666666553    444443321  2567889999974  899887 3   4443  577889


Q ss_pred             HHHHHHHH
Q 031686          137 SNVKSFAL  144 (155)
Q Consensus       137 ~~I~~Fi~  144 (155)
                      +.|.+|+.
T Consensus        84 ~~l~~~~~   91 (106)
T 3kp8_A           84 EALAVASG   91 (106)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhC
Confidence            99998863

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=81.88  E-value=0.36  Score=34.82  Aligned_cols=41  Identities=20%  Similarity=0.241  Sum_probs=29.1

Q ss_pred             hhhhhhhCCCCCCcceEEEEecCCCeeecCC-CCCCHHHHHHHHHHHHc
Q 031686          101 GQIFDYFGVTCYTSRVIAVASIRKRKKYVLN-GELTLSNVKSFALDFLG  148 (155)
Q Consensus       101 ~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~-~~~t~~~I~~Fi~~f~~  148 (155)
                      .+.++.+|+++  .|+++| +   + +|.++ ++++.+++.+|+++|++
T Consensus        40 ~~~a~~~gi~g--vP~fvi-n---g-k~~~~~~~~~~~~~~~f~~~~~~   81 (197)
T 1un2_A           40 EKAAADVQLRG--VPAMFV-N---G-KYQLNPQGMDTSNMDVFVQQYAD   81 (197)
T ss_dssp             HHHHHHTTCCS--SSEEEE-T---T-TEEECGGGSCCSSHHHHHHHHHH
T ss_pred             HHHHHHcCCCc--CCEEEE-c---c-eEecCccccccccHHHHHHHHHH
Confidence            45578889986  899976 2   3 66555 45777778888887765

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=80.60  E-value=11  Score=25.70  Aligned_cols=38  Identities=11%  Similarity=-0.059  Sum_probs=23.5

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeC
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQI   95 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~   95 (155)
                      ++++++.|...-  .-.. ...+.+++++++++ +.++.+..
T Consensus        38 Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~   79 (180)
T 3kij_A           38 GKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPC   79 (180)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEEC
T ss_pred             CCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEEC
Confidence            445555555432  2234 66788899998875 77776653

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=80.41  E-value=7.6  Score=26.78  Aligned_cols=33  Identities=0%  Similarity=-0.285  Sum_probs=21.6

Q ss_pred             cceEEEEecCCCeeecCCCCCCHHHHHHHHHHH
Q 031686          114 SRVIAVASIRKRKKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       114 ~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      .|+..+++.+..-.+.+.+..+++.|.+.|+..
T Consensus       152 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  184 (185)
T 2gs3_A          152 NFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  184 (185)
T ss_dssp             SCCEEEECTTSCEEEEECTTSCGGGGGGGHHHH
T ss_pred             cceEEEECCCCCEEEeeCCCCCHHHHHHHHHHh
Confidence            378888886543345455666777777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	155
d2djka1	133	c.47.1.2 (A:1-133) Protein disulfide isomerase, PD	6e-14
d2b5ea3	125	c.47.1.2 (A:240-364) Protein disulfide isomerase,	2e-10

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 62.6 bits (152), Expect = 6e-14
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 40  IPPMITYSRETTPLILNSPLKLLWLFAAVHDS--EAKSIFQETARAFKGKLLFVYSQIYP 97
            P +     ET    +++ + L ++FA   +   E     +  A A +G + F    I  
Sbjct: 5   SPLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGT--IDA 62

Query: 98  KLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVL--NGELTLSNVKSFALDFLGDKL 151
           K  G       +        A+  + K +K+      E+T   +K+F  DF+  K+
Sbjct: 63  KAFGAHAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKI 118

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 125

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (127), Expect = 2e-10
 Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 18/121 (14%)

Query: 46  YSRETTPLILNSPLKLLWLFAAVHDS--EAKSIFQETARAFKGKLLFVYSQIYPKLKGQI 103
                    + S L L +LF    +   E K +F E A+  +G + FV      +  G+ 
Sbjct: 5   IDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDA--RKFGRH 62

Query: 104 FDYFGVTCYTSRVIAVASIRKRKKYVLN-------------GELTLSNVKSFALDFLGDK 150
                +      + A+  + +  KY L                L    ++S   DFL   
Sbjct: 63  AGNLNMKEQFP-LFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGD 121

Query: 151 L 151
            
Sbjct: 122 A 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	99.92
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	99.9
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.0
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.85
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.77
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.75
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	98.74
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	98.65
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.63
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.54
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.53
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	98.34
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	98.34
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.26
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	98.15
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	98.15
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	98.14
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	98.09
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.08
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.91
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	97.86
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	97.77
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	97.75
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	97.71
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	97.69
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	97.69
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	97.68
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	97.67
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	97.65
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	97.58
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	97.56
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	97.41
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	97.21
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	96.73
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	96.43
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	96.39
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	95.4
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	94.97
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	94.8
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	94.54
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	93.91
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	92.72
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	92.1
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	91.85
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	91.28
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	91.16
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	89.72
d1wjka_	100	Thioredoxin-like structure containing protein C330	89.5
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	80.81

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.92  E-value=2.4e-25  Score=154.33  Aligned_cols=116  Identities=18%  Similarity=0.260  Sum_probs=104.9

Q ss_pred             CCCCCeEecCCCchhhhhcCCCceEEEEeecC-ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcc
Q 031686           38 NKIPPMITYSRETTPLILNSPLKLLWLFAAVH-DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSR  115 (155)
Q Consensus        38 ~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~-~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P  115 (155)
                      ..+|+|+++|.+|+..|++.++|++|+|.+.+ +.++ .+.++++|++||++++|+|+|++.  +.+.+++||++.+++|
T Consensus         3 ~~lPLv~e~~~~n~~~~~~~~~pl~~lf~~~~~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~--~~~~l~~~gl~~~~~P   80 (133)
T d2djka1           3 LGSPLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKA--FGAHAGNLNLKTDKFP   80 (133)
T ss_dssp             CSCCCSEECCHHHHHHHHHTTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTT--TGGGTTTTTCCSSSSS
T ss_pred             CCCCceeccChhhHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHHHHHhcCceEEEEEeHHH--hHHHHHHhcCCcccCC
Confidence            36899999999999999999999999998765 5677 999999999999999999999886  7899999999988999


Q ss_pred             eEEEEecCCCeeecCC--CCCCHHHHHHHHHHHHcCCCccCC
Q 031686          116 VIAVASIRKRKKYVLN--GELTLSNVKSFALDFLGDKLRNQK  155 (155)
Q Consensus       116 ~v~i~~~~~~~kY~~~--~~~t~~~I~~Fi~~f~~Gkl~p~~  155 (155)
                      +++|++...+.+|++.  +++|.++|.+||++|++|||+||.
T Consensus        81 ~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gkl~p~~  122 (133)
T d2djka1          81 AFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPSI  122 (133)
T ss_dssp             EEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCCCCSS
T ss_pred             cEEEEEcCCCceecCCccccCCHHHHHHHHHHHHcCCCCccc
Confidence            9999998767788765  479999999999999999999984

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=2.8e-24  Score=147.77  Aligned_cols=109  Identities=21%  Similarity=0.216  Sum_probs=98.5

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecC-ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEE
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVH-DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVA  120 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~-~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~  120 (155)
                      .+|++++|+.+|++++.|++++|++.+ ++++ ++.++++|++||+++.|+|+|.+.  +.+.+++||+++ ++|+++|+
T Consensus         2 ~gei~~~~~~~y~~~~~Pl~~~f~~~~~~~~~~~~~~~~vAk~fkgki~Fv~~D~~~--~~~~l~~fgl~e-~~P~~~i~   78 (125)
T d2b5ea3           2 FGEIDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARK--FGRHAGNLNMKE-QFPLFAIH   78 (125)
T ss_dssp             SCBCCHHHHHHHHHTTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTTCEEEEEEHHH--HTTHHHHTTCCS-CSSEEEEE
T ss_pred             CCccCHHHHHHHHhcCCCEEEEEeCChHHHHHHHHHHHHHHHHhcCeeEEEEEchHH--hHHHHHHcCCCc-cCCcEEEE
Confidence            579999999999999999999998875 5677 999999999999999999999985  789999999985 69999999


Q ss_pred             ecCCCeeecCC-------------CCCCHHHHHHHHHHHHcCCCccC
Q 031686          121 SIRKRKKYVLN-------------GELTLSNVKSFALDFLGDKLRNQ  154 (155)
Q Consensus       121 ~~~~~~kY~~~-------------~~~t~~~I~~Fi~~f~~Gkl~p~  154 (155)
                      +.+++.+|+++             +++|.++|.+|+++|++|||+|-
T Consensus        79 ~~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GKlkPi  125 (125)
T d2b5ea3          79 DMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPI  125 (125)
T ss_dssp             ETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCCC
T ss_pred             ecccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCCcCCC
Confidence            98878899874             36999999999999999999993

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.00  E-value=5e-09  Score=68.22  Aligned_cols=102  Identities=16%  Similarity=0.172  Sum_probs=80.4

Q ss_pred             CeEecCCCchhh-hhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686           42 PMITYSRETTPL-ILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI  117 (155)
Q Consensus        42 ~v~e~~~~~~~~-i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v  117 (155)
                      -|.++|.++++. +.+++.|.++.|...-  .-.. ...+.++|.++.+.+.|+.+|.+.  +..+.+.||+..  +|++
T Consensus         3 ~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~I~~--~Pt~   78 (108)
T d1thxa_           3 GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP--NPTTVKKYKVEG--VPAL   78 (108)
T ss_dssp             SEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTT--CHHHHHHTTCCS--SSEE
T ss_pred             CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccc--cHHHHHHhcccC--CCEE
Confidence            388999999876 5566677777776553  2345 778899999999999999999996  678899999974  8999


Q ss_pred             EEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          118 AVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       118 ~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      .+++. +.....+.|..+.++|.+||+.+++
T Consensus        79 ~~~~~-g~~v~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          79 RLVKG-EQILDSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             EEEET-TEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEC-CEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            99973 2233445678899999999999874

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.85  E-value=1.2e-08  Score=66.04  Aligned_cols=100  Identities=14%  Similarity=0.101  Sum_probs=80.8

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEE
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAV  119 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i  119 (155)
                      ..++|.+++++..++++|.++.|...-  .-.. ...+.++|+++.+++.|+.+|.+.  ++.+.+.||+..  +|++++
T Consensus         2 ~i~lt~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~--~~~~~~~~~V~~--~Pt~~~   77 (105)
T d1nw2a_           2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE--NPETTSQFGIMS--IPTLIL   77 (105)
T ss_dssp             CEEECTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT--CHHHHHHTTCCB--SSEEEE
T ss_pred             EEEECHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCC--CcccHHHCCcce--eeEEEE
Confidence            467899999999998888877787653  2345 778999999999999999999996  678899999975  899999


Q ss_pred             EecCCCeeecCCCCCCHHHHHHHHHHHH
Q 031686          120 ASIRKRKKYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       120 ~~~~~~~kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      +.. +.....+.|..+.+.|+++|++++
T Consensus        78 ~~~-G~~~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          78 FKG-GEPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EET-TEEEEEEESCCCHHHHHHHTTTTC
T ss_pred             EEC-CEEEEEEECCCCHHHHHHHHHHHh
Confidence            973 223445567789999999998765

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=98.77  E-value=5.6e-08  Score=62.54  Aligned_cols=99  Identities=12%  Similarity=0.123  Sum_probs=77.0

Q ss_pred             eEecCCCchhhhh-cCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           43 MITYSRETTPLIL-NSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        43 v~e~~~~~~~~i~-~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      |.++|.+++++.. ++++|+++.|...-  .-.. ...+.++++++.++..++.+|.+.  ++.+.+.||+..  +|+++
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~--~~~l~~~~~V~~--~Pt~~   76 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE--APGIATQYNIRS--IPTVL   76 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCS--SSEEE
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEeccc--chhhhhhcceee--eeEEE
Confidence            5689999998744 55666677777653  2345 778999999999999999999996  678899999975  89999


Q ss_pred             EEecCCCe-eecCCCCCCHHHHHHHHHHHH
Q 031686          119 VASIRKRK-KYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       119 i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      ++..  |+ ...+.|..+.+.|.+||++++
T Consensus        77 ~~~~--G~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          77 FFKN--GERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             EEET--TEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EEEc--CeEEEEEeCCCCHHHHHHHHHHhC
Confidence            8863  43 334557779999999999864

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.75  E-value=4.3e-08  Score=63.47  Aligned_cols=101  Identities=18%  Similarity=0.162  Sum_probs=77.4

Q ss_pred             eEecCCCchhhh-hcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           43 MITYSRETTPLI-LNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        43 v~e~~~~~~~~i-~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      ++.+|.+++++. .++++|+++.|...-  .-.. ...+.++++++.+++.|+.+|.+.  +..+.+.|++..  +|+++
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~V~~--~Pt~~   78 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE--SPNVASEYGIRS--IPTIM   78 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHHTCCS--SCEEE
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEeccc--chhHHHHhcccc--eEEEE
Confidence            456788888765 455667776676553  2344 668889999999999999999996  678899999975  89999


Q ss_pred             EEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          119 VASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       119 i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +++. +.....+.|..+.+.|.+||+.+++
T Consensus        79 ~~~~-G~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          79 VFKG-GKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             EESS-SSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             EEEC-CeEEEEEeCCCCHHHHHHHHHHhhC
Confidence            9973 2234455677899999999999874

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=1.5e-07  Score=62.13  Aligned_cols=102  Identities=8%  Similarity=0.055  Sum_probs=79.2

Q ss_pred             CCeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           41 PPMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG-KLLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      +.|.+++.++++++..+..+.++.|...-  .-.. ...+.++|+.+++ .+.|+.+|.+.  +..+.+.|++..  +|+
T Consensus        10 s~v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~--~Pt   85 (119)
T d2b5ea4          10 SAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE--NQDLCMEHNIPG--FPS   85 (119)
T ss_dssp             SSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT--CHHHHHHTTCCS--SSE
T ss_pred             CccEEcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccc--hHHHHHHhcccc--CCe
Confidence            46889999999999887766677776653  2345 7789999999875 59999999996  678889999864  899


Q ss_pred             EEEEec-CCCeeecCCCCCCHHHHHHHHHHH
Q 031686          117 IAVASI-RKRKKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       117 v~i~~~-~~~~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      +.++.. .....+.+.|+.+.++|.+||++.
T Consensus        86 i~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~  116 (119)
T d2b5ea4          86 LKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQ  116 (119)
T ss_dssp             EEEEETTCTTCEEECCSCCSHHHHHHHHHHH
T ss_pred             EEEEECCEEeeeEEecCCCCHHHHHHHHHHh
Confidence            998853 122344567788999999999975

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=3.9e-07  Score=58.77  Aligned_cols=101  Identities=18%  Similarity=0.185  Sum_probs=77.2

Q ss_pred             CeEecCCCchhh-hhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686           42 PMITYSRETTPL-ILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI  117 (155)
Q Consensus        42 ~v~e~~~~~~~~-i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v  117 (155)
                      -|.++|.+++.+ +.+.+.+.++.|...-  .-.. ...+.++|.++.+++.++.+|.+.  ++.+.+.||+..  +|++
T Consensus         3 ~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~--~~~l~~~~~v~~--~PT~   78 (108)
T d2trxa_           3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRG--IPTL   78 (108)
T ss_dssp             TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT--CTTHHHHTTCCS--SSEE
T ss_pred             CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccc--hhhHHHHhCCCc--EEEE
Confidence            478899999976 4555655566666442  2234 677889999999999999999986  678899999974  8999


Q ss_pred             EEEecCCCe-eecCCCCCCHHHHHHHHHHHHc
Q 031686          118 AVASIRKRK-KYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       118 ~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +++..  |+ ...+.|..+.+.|.+||+.-++
T Consensus        79 ~~~~~--G~~v~~~~G~~~~~~l~~~i~~~Ls  108 (108)
T d2trxa_          79 LLFKN--GEVAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             EEEET--TEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEC--CEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            98873  43 3345678899999999998664

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.63  E-value=4.4e-07  Score=60.19  Aligned_cols=102  Identities=18%  Similarity=0.188  Sum_probs=79.0

Q ss_pred             CCeEecCCCchhhhhcCCCceEEEEeecC-C-------hhH-HHHHHHHHHhhcC-ceEEEEEeCCCcchhhhhhhhCCC
Q 031686           41 PPMITYSRETTPLILNSPLKLLWLFAAVH-D-------SEA-KSIFQETARAFKG-KLLFVYSQIYPKLKGQIFDYFGVT  110 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~~~~~v~lf~~~~-~-------~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~~~~~~~~~gl~  110 (155)
                      +.|.++|.+|++++..+....++.|+..- .       ... ...+..+|+..++ .+.|+.+|.+.  +..+.+.+++.
T Consensus        11 ~~V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~--~~~l~~~~~I~   88 (124)
T d1a8ya1          11 DRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK--DAAVAKKLGLT   88 (124)
T ss_dssp             CCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTT--SHHHHHTTTCC
T ss_pred             CccEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeec--ccchhhccccc
Confidence            34889999999999888766677776552 1       233 4566677777655 49999999986  67888999997


Q ss_pred             CCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          111 CYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       111 ~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +  .|++.++..  ++...+.|..+.++|.+|+.+.++
T Consensus        89 ~--yPTi~~f~~--g~~~~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          89 E--EDSIYVFKE--DEVIEYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             S--TTCEEEEES--SSEEECCSCCSHHHHHHHHHHHHS
T ss_pred             c--CCcEEEecc--CccEEeeCCCCHHHHHHHHHHhcC
Confidence            5  899998874  455567788999999999999875

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.54  E-value=5.1e-07  Score=58.55  Aligned_cols=102  Identities=12%  Similarity=0.136  Sum_probs=74.8

Q ss_pred             eEecCCCchhhhhcCCCc--eEEEEeecCC--hhH-HHHHHHHHHhhcC--ceEEEEEeCCCcchhhhh----hhhCCCC
Q 031686           43 MITYSRETTPLILNSPLK--LLWLFAAVHD--SEA-KSIFQETARAFKG--KLLFVYSQIYPKLKGQIF----DYFGVTC  111 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~--~v~lf~~~~~--~~~-~~~~~~vA~~~~~--~i~F~~vd~~~~~~~~~~----~~~gl~~  111 (155)
                      ...+..+++..+.+.+..  .++.|+..++  .-+ .+.++++|+.+.+  ++.|+|+|.+.  ++-+.    +.||++-
T Consensus         2 lrKl~~e~m~e~W~dd~~g~~IvAFaee~d~dG~eFl~ilk~vA~~nt~n~~LsivWIDPD~--FPlm~~yWe~tF~IDl   79 (119)
T d1a8ya3           2 LRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDD--FPLLVPYWEKTFDIDL   79 (119)
T ss_dssp             EEECCTTTHHHHHTCCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHSTTCSSCCEEEECGGG--CTTTHHHHHHHHTCCT
T ss_pred             ccccchHHHHHHHhcccCCceEEEEecCCCccHHHHHHHHHHHHHHcCcCCCceEEEECCcc--cchHHHHHHHhcCCCC
Confidence            456788888888888743  2777777653  445 8899999999875  49999999997  55444    4578886


Q ss_pred             CCcceEEEEecCCC--eeecCCC--C-CCHHHHHHHHHHHH
Q 031686          112 YTSRVIAVASIRKR--KKYVLNG--E-LTLSNVKSFALDFL  147 (155)
Q Consensus       112 ~~~P~v~i~~~~~~--~kY~~~~--~-~t~~~I~~Fi~~f~  147 (155)
                      . -|++.|++.+..  --|.+++  + -|.+.|++||.+++
T Consensus        80 ~-~PqIGVVdv~dadSvW~~~~~~~d~~t~~~Le~WiedVl  119 (119)
T d1a8ya3          80 S-APQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVL  119 (119)
T ss_dssp             T-SCEEEEEETTTCCEEECC-------CCHHHHHHHHHHHC
T ss_pred             C-CCceeeEecccCcceeeecccccccccHHHHHHHHHHhC
Confidence            5 599999998543  3566643  3 49999999999874

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.53  E-value=2.2e-07  Score=60.10  Aligned_cols=87  Identities=14%  Similarity=0.095  Sum_probs=65.5

Q ss_pred             hhhhhcCCCce-EEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeec
Q 031686           51 TPLILNSPLKL-LWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYV  129 (155)
Q Consensus        51 ~~~i~~~~~~~-v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~  129 (155)
                      ++.+......+ ++.|++..+.+..+.|.++|..+|+++.|+++...     .+++.+|++   .|+|+++.+-...+..
T Consensus        10 ~~~F~~~~d~v~VvGfF~~~~~~~~~~F~~~A~~~rd~~~F~~t~d~-----~va~~~~v~---~~~vvlfr~fde~~~~   81 (102)
T d1a8ya2          10 LQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFATFDS-----KVAKKLTLK---LNEIDFYEAFMEEPVT   81 (102)
T ss_dssp             HHHHTTCCSSCEEEEECSSTTCHHHHHHHHHHHHHTTTSCEEEECCH-----HHHHHHCCC---TTCEEEECTTCSSEEE
T ss_pred             HHHHhccCCCEEEEEEECCCCcHHHHHHHHHHHHcCCCceEEEECCH-----HHHHHcCCC---CCCEEEeeecCCCcee
Confidence            45554433334 78888654433388999999999999999998554     678889996   5999999874444566


Q ss_pred             CCC-CCCHHHHHHHHHH
Q 031686          130 LNG-ELTLSNVKSFALD  145 (155)
Q Consensus       130 ~~~-~~t~~~I~~Fi~~  145 (155)
                      +++ ++|.++|.+||++
T Consensus        82 ~~~~~~t~~~i~~Fi~~   98 (102)
T d1a8ya2          82 IPDKPNSEEEIVNFVEE   98 (102)
T ss_dssp             CSSSSCCHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHH
Confidence            776 5999999999985

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.7e-06  Score=55.63  Aligned_cols=102  Identities=11%  Similarity=0.083  Sum_probs=76.7

Q ss_pred             CCeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC---ceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           41 PPMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG---KLLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~---~i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      ..|..+|.++++++.++..++++.|...-  .-.. ...+.++++++++   ++.|+.+|.+.  +..+.+.|++..  +
T Consensus         7 ~~V~~l~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~--~   82 (120)
T d1meka_           7 DHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE--ESDLAQQYGVRG--Y   82 (120)
T ss_dssp             TTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT--CCSSHHHHTCCS--S
T ss_pred             CCeEEcCHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeecccccc--chhHHHHhCCcc--C
Confidence            45788999999999888877777777552  2344 6678888888754   48899999986  568889999975  8


Q ss_pred             ceEEEEecCC-CeeecCCCCCCHHHHHHHHHHH
Q 031686          115 RVIAVASIRK-RKKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       115 P~v~i~~~~~-~~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      |++.++.... .....+.|..+.++|.+||++.
T Consensus        83 Pt~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~  115 (120)
T d1meka_          83 PTIKFFRNGDTASPKEYTAGREADDIVNWLKKR  115 (120)
T ss_dssp             SEEEEEESSCSSSCEECCCCSSHHHHHHHHHTT
T ss_pred             CeEEEEECCeEeeeEEecCCCCHHHHHHHHHHh
Confidence            9998886421 1233456788999999999874

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.34  E-value=1.2e-05  Score=52.90  Aligned_cols=105  Identities=12%  Similarity=0.042  Sum_probs=74.8

Q ss_pred             CCeEecCCCchhhhhcCCCceEEEEeecC-ChhHHHHHHHHHHhh---cCceEEEEEeCCCc---chhhhhhhhCCCCCC
Q 031686           41 PPMITYSRETTPLILNSPLKLLWLFAAVH-DSEAKSIFQETARAF---KGKLLFVYSQIYPK---LKGQIFDYFGVTCYT  113 (155)
Q Consensus        41 P~v~e~~~~~~~~i~~~~~~~v~lf~~~~-~~~~~~~~~~vA~~~---~~~i~F~~vd~~~~---~~~~~~~~~gl~~~~  113 (155)
                      |=+.+++++|+.++..+..-.++.|...- ..-+...|.++|++.   ..++.++-+|.+..   .+..+.+.|++....
T Consensus         2 ~g~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~   81 (122)
T d2c0ga2           2 TGCVDLDELSFEKTVERFPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKN   81 (122)
T ss_dssp             TTCEECCTTTHHHHHTTSSEEEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTS
T ss_pred             CceEEcChHhHHHHHhcCCcEEEEEECCCCCcccCHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccCC
Confidence            34679999999999987744466776552 111134566666654   45688988886532   256788999997667


Q ss_pred             cceEEEEecCCC--eeecCCCCCCHHHHHHHHHH
Q 031686          114 SRVIAVASIRKR--KKYVLNGELTLSNVKSFALD  145 (155)
Q Consensus       114 ~P~v~i~~~~~~--~kY~~~~~~t~~~I~~Fi~~  145 (155)
                      +|++.++.....  ..|.+.++.|.++|.+|+++
T Consensus        82 ~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~  115 (122)
T d2c0ga2          82 FPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSA  115 (122)
T ss_dssp             CCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHH
T ss_pred             CCcEEEEeCCcccccccccCCCCCHHHHHHHHHH
Confidence            999999875322  35666788999999999986

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.26  E-value=4.3e-06  Score=54.31  Aligned_cols=100  Identities=16%  Similarity=0.211  Sum_probs=70.0

Q ss_pred             eEec-CCCchhhhhc----CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           43 MITY-SRETTPLILN----SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        43 v~e~-~~~~~~~i~~----~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      |..+ |.+++.+.+.    .++++++.|...-  .-.. ...+.++|+++.+++.|+.+|.+.  ++.+.+.||+..  +
T Consensus         4 v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~--~   79 (112)
T d1ep7a_           4 VIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA--VAAVAEAAGITA--M   79 (112)
T ss_dssp             EEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT--THHHHHHHTCCB--S
T ss_pred             EEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccc--cccccccccccC--C
Confidence            4455 3344444443    3456666666443  2244 678899999999999999999986  678899999974  8


Q ss_pred             ceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          115 RVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       115 P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      |+++++.. +.....+.| .+.+.|++||+.+.+
T Consensus        80 Pt~~~~~~-G~~v~~~~G-~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          80 PTFHVYKD-GVKADDLVG-ASQDKLKALVAKHAA  111 (112)
T ss_dssp             SEEEEEET-TEEEEEEES-CCHHHHHHHHHHHHC
T ss_pred             CEEEEEEC-CEEEEEEeC-cCHHHHHHHHHHHhC
Confidence            99998873 222333444 489999999998753

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=8.2e-06  Score=52.97  Aligned_cols=95  Identities=14%  Similarity=0.134  Sum_probs=66.4

Q ss_pred             CchhhhhcCCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeee
Q 031686           49 ETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKY  128 (155)
Q Consensus        49 ~~~~~i~~~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY  128 (155)
                      +.++.+..+....++.|+...+....+.|.++|+.++ ++.|+++...     .+++.+|++   .|.|++..+....+-
T Consensus         9 ~~~e~f~~~~~v~VVGfF~~~~~~~~~~F~~~A~~~~-d~~F~~t~~~-----~v~~~~~v~---~~~Ivl~k~~de~~~   79 (110)
T d1bjxa_           9 AAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAID-DIPFGITSNS-----DVFSKYQLD---KDGVVLFKKFDEGRN   79 (110)
T ss_dssp             HHHHHHHHHSSEEEEEECTTTTSHHHHHHHHHHHHCS-SSCEEEECCS-----HHHHHTTCS---SCEEEEEESSSSSBC
T ss_pred             HHHHHHhccCCeEEEEEEcCCCchHHHHHHHHHHhCc-CceEEEECCH-----HHHHHcCCC---CCeEEEeccCCcccc
Confidence            4455566555444778876543233789999999985 5888887554     467888886   499999987433232


Q ss_pred             cCCCCCCHHHHHHHHHHHHcCCCc
Q 031686          129 VLNGELTLSNVKSFALDFLGDKLR  152 (155)
Q Consensus       129 ~~~~~~t~~~I~~Fi~~f~~Gkl~  152 (155)
                      .++++++.++|.+||+.-.-.-+.
T Consensus        80 ~~~~~~~~~~l~~fi~~~~~PlV~  103 (110)
T d1bjxa_          80 NFEGEVTKENLLDFIKHNQLPLVI  103 (110)
T ss_dssp             CCCSCCCHHHHHHHHHHHSSCCCS
T ss_pred             ccCCCCCHHHHHHHHHHcCcCcEE
Confidence            346789999999999987654443

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.15  E-value=1.2e-05  Score=52.25  Aligned_cols=103  Identities=15%  Similarity=0.127  Sum_probs=75.7

Q ss_pred             CCCCCeEecC-CCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCC
Q 031686           38 NKIPPMITYS-RETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYT  113 (155)
Q Consensus        38 ~~~P~v~e~~-~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~  113 (155)
                      ...|.+.+++ .+.+.++.+.+.+.++.|...-  .-.. ...+.++|+++. ++.|+.+|.+.  +..+.+.||+..  
T Consensus         5 ~~~p~vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~--~~~l~~~~~V~~--   79 (113)
T d1r26a_           5 ARYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADN--NSEIVSKCRVLQ--   79 (113)
T ss_dssp             SCCSCCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTT--CHHHHHHTTCCS--
T ss_pred             cCCCceEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceeccccccccc-ccccccccccc--chhhHHHccccC--
Confidence            4578888884 5778888888766666665442  2345 678899999985 69999999986  678999999974  


Q ss_pred             cceEEEEecCCCe-eecCCCCCCHHHHHHHHHHHHc
Q 031686          114 SRVIAVASIRKRK-KYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       114 ~P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +|++.++..  |+ ...+.| .+++.+.+.|++++.
T Consensus        80 ~Pt~~~~~~--G~~v~~~~G-~~~~~l~~~l~~~ik  112 (113)
T d1r26a_          80 LPTFIIARS--GKMLGHVIG-ANPGMLRQKLRDIIK  112 (113)
T ss_dssp             SSEEEEEET--TEEEEEEES-SCHHHHHHHHHHHHH
T ss_pred             CCEEEEEEC--CEEEEEEeC-CCHHHHHHHHHHHhc
Confidence            899998873  42 333344 467888888887753

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.14  E-value=1.2e-05  Score=54.01  Aligned_cols=102  Identities=14%  Similarity=0.132  Sum_probs=73.1

Q ss_pred             CCCCeEecCCCchhhhh-cCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC---ceEEEEEeCCCcchhhhhhhhCCCC
Q 031686           39 KIPPMITYSRETTPLIL-NSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG---KLLFVYSQIYPKLKGQIFDYFGVTC  111 (155)
Q Consensus        39 ~~P~v~e~~~~~~~~i~-~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~---~i~F~~vd~~~~~~~~~~~~~gl~~  111 (155)
                      .-+.|.+++.+|+.++. +.+.+.++.|..+-  .-.. ...|.++|+.+++   .+.++.+|...    .+++.+++. 
T Consensus        10 ~~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~----~~~~~~~v~-   84 (140)
T d2b5ea1          10 QDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE----NDVRGVVIE-   84 (140)
T ss_dssp             CSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG----CCCSSCCCS-
T ss_pred             CCCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccc----hhccccccc-
Confidence            34679999999999976 44556677776553  2244 6788899988764   46777776653    567788886 


Q ss_pred             CCcceEEEEecCC-CeeecCCCCCCHHHHHHHHHHH
Q 031686          112 YTSRVIAVASIRK-RKKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       112 ~~~P~v~i~~~~~-~~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                       .+|++.++.... .....+.|..|.++|.+||++-
T Consensus        85 -~~Ptl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~  119 (140)
T d2b5ea1          85 -GYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKEN  119 (140)
T ss_dssp             -SSSEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHH
T ss_pred             -cCCeEEEEECCEEcceeEeCCCCCHHHHHHHHHHc
Confidence             499999886421 2234557788999999999874

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.09  E-value=1.8e-06  Score=56.97  Aligned_cols=101  Identities=10%  Similarity=0.034  Sum_probs=68.5

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecCChhH-HHHHHHHHHhhcC--ceEE-----EEEeCCCcchhhhhhhhCCCCCCc
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVHDSEA-KSIFQETARAFKG--KLLF-----VYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~~~~~-~~~~~~vA~~~~~--~i~F-----~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      +.++|.+|+.++.......++.|.-.-.... ...++++|+.+.+  +...     ..+|.+  .+..+.+.++++-..+
T Consensus         6 ~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~~~~~~~la~~~~~~~~~~~~~V~~~~vd~~--~n~~l~~~~~~~I~~y   83 (122)
T d1g7ea_           6 ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDK--LNMELSEKYKLDKESY   83 (122)
T ss_dssp             SCSCSHHHHHHHGGGSSEEEEEEECSSCCTTTTHHHHHHHHHGGGCSSEEEEEEESCCTTSC--HHHHHHHHHTCSSSSC
T ss_pred             eEECCHHhHHHHHhhCCeEEEEEecCCcCcccCHHHHHHHHHHHHHHHHhhhccceeecccc--ccHHHHHhhcccccCC
Confidence            6789999999999887666677754432222 4578888888764  2333     223333  2667778888776679


Q ss_pred             ceEEEEecCCC-eeecCCCCCCHHHHHHHHHH
Q 031686          115 RVIAVASIRKR-KKYVLNGELTLSNVKSFALD  145 (155)
Q Consensus       115 P~v~i~~~~~~-~kY~~~~~~t~~~I~~Fi~~  145 (155)
                      |++.++..... ....++|+.|.++|.+||++
T Consensus        84 PTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~  115 (122)
T d1g7ea_          84 PVFYLFRDGDFENPVPYSGAVKVGAIQRWLKG  115 (122)
T ss_dssp             EEEEEEESSCCCCCEEEESCCCHHHHHHHHHT
T ss_pred             CeEEEEecCcccCceecCCCCCHHHHHHHHHh
Confidence            99998875221 12234678999999999986

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=98.08  E-value=5.9e-05  Score=48.71  Aligned_cols=101  Identities=7%  Similarity=0.064  Sum_probs=72.5

Q ss_pred             CCCeEecCCCchhhhhcC--CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           40 IPPMITYSRETTPLILNS--PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        40 ~P~v~e~~~~~~~~i~~~--~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      ..-|.++|.+++......  +++.++.|....  .-.. ...+.++|+++.+ +.|+.+|.+. .++.+.+.||+..  +
T Consensus         5 ~g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-v~~~~vd~~~-~~~~l~~~~~V~~--~   80 (112)
T d1f9ma_           5 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQ-ENKTLAKELGIRV--V   80 (112)
T ss_dssp             TTSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSS-TTHHHHHHHCCSS--S
T ss_pred             ceeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc-ceeecccccc-cchhhHhheeecc--C
Confidence            346899999999988765  345566665543  2244 6688999999875 7789998864 2577889999974  8


Q ss_pred             ceEEEEecCCCe-eecCCCCCCHHHHHHHHHHHH
Q 031686          115 RVIAVASIRKRK-KYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       115 P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      |++.++..  |+ ...+.| .+++.+.++|+..+
T Consensus        81 Pt~~~~k~--G~~v~~~~G-~~~~~l~e~i~~~~  111 (112)
T d1f9ma_          81 PTFKILKE--NSVVGEVTG-AKYDKLLEAIQAAR  111 (112)
T ss_dssp             SEEEEEET--TEEEEEEES-SCHHHHHHHHHHHH
T ss_pred             CEEEEEEC--CEEEEEEeC-CCHHHHHHHHHHcc
Confidence            99999963  32 223344 36789999998765

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.91  E-value=8.8e-05  Score=47.03  Aligned_cols=98  Identities=16%  Similarity=0.078  Sum_probs=68.1

Q ss_pred             cCCCchhhhhcCCCceEE-EEeecC--ChhH-HHHHHHHHHh----hcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686           46 YSRETTPLILNSPLKLLW-LFAAVH--DSEA-KSIFQETARA----FKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI  117 (155)
Q Consensus        46 ~~~~~~~~i~~~~~~~v~-lf~~~~--~~~~-~~~~~~vA~~----~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v  117 (155)
                      ++.++.+.+-..+.++++ .|....  .=.. ...+.++|.+    +.+.+.+..+|.+.  ++++.+.||+..  .|++
T Consensus         2 l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~--~~~l~~~~~V~~--vPTi   77 (107)
T d1a8la2           2 LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE--YPEWADQYNVMA--VPKI   77 (107)
T ss_dssp             CCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG--CHHHHHHTTCCS--SCEE
T ss_pred             CCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccc--cccccccccccc--ceEE
Confidence            556666777777778744 466542  2233 5566677654    44568999999986  678899999975  8998


Q ss_pred             EEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          118 AVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       118 ~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      ++.. ++.....+.|..+.+.+.++|.+-++
T Consensus        78 ~i~~-~G~~~~~~~G~~~~~~~~~~i~~al~  107 (107)
T d1a8la2          78 VIQV-NGEDRVEFEGAYPEKMFLEKLLSALS  107 (107)
T ss_dssp             EEEE-TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEe-CCeEEEEEECCCCHHHHHHHHHHhhC
Confidence            7654 22234455678899999999988653

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.86  E-value=3.6e-05  Score=50.49  Aligned_cols=101  Identities=12%  Similarity=0.060  Sum_probs=65.0

Q ss_pred             eEecCCCchhhhhcCCCceEEEEe-ecC---ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           43 MITYSRETTPLILNSPLKLLWLFA-AVH---DSEA-KSIFQETARAFKG-KLLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~-~~~---~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      +.+++..+++.+.+.....++++. ...   +-.. ...+.+++++|.+ ++.++.+|.+.  +..+.+.||++.  +|+
T Consensus        13 ~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~--~~~l~~~~~V~~--~Pt   88 (119)
T d2es7a1          13 WQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQ--SEAIGDRFNVRR--FPA   88 (119)
T ss_dssp             CEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHH--HHHHHHTTTCCS--SSE
T ss_pred             CceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCC--CHHHHHhcCcCc--ceE
Confidence            456677777776666544444432 221   2344 6789999999987 69999999885  678899999974  899


Q ss_pred             EEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          117 IAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       117 v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +.++.. +.....+.|..+.+++.++|+..++
T Consensus        89 ~~~~~~-G~~v~~~~G~~~~~~l~~~i~~lLd  119 (119)
T d2es7a1          89 TLVFTD-GKLRGALSGIHPWAELLTLMRSIVD  119 (119)
T ss_dssp             EEEESC-C----CEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEEc-CeEEEEeeCCCCHHHHHHHHHHHhC
Confidence            999863 2223345677899999999998764

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.77  E-value=8.2e-05  Score=48.04  Aligned_cols=98  Identities=8%  Similarity=0.065  Sum_probs=70.1

Q ss_pred             eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCc--chhhhhhhhCCCCCCcceE
Q 031686           43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPK--LKGQIFDYFGVTCYTSRVI  117 (155)
Q Consensus        43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~--~~~~~~~~~gl~~~~~P~v  117 (155)
                      +...|.+.+.+..+.+.+.++.|..+.  .=.. ...+.++|+++..++.|+.++....  ..+.+.+.+|+..  .|++
T Consensus        11 ~~~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~--~PTl   88 (115)
T d1zmaa1          11 LEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPT--VPGF   88 (115)
T ss_dssp             SEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCS--SCEE
T ss_pred             eeeCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeeccccccccccccccccccc--ccEE
Confidence            445566778888888877776776543  2244 6788899999988887776654321  1346778899974  8999


Q ss_pred             EEEecCCCe-eecCCCCCCHHHHHHHHH
Q 031686          118 AVASIRKRK-KYVLNGELTLSNVKSFAL  144 (155)
Q Consensus       118 ~i~~~~~~~-kY~~~~~~t~~~I~~Fi~  144 (155)
                      ++++.  |+ ...+.|..++++|++|+.
T Consensus        89 i~~~~--gk~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          89 VHITD--GQINVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             EEEET--TEEEEECCTTCCHHHHHHHHT
T ss_pred             EEEEC--CEEEEEEcCCCCHHHHHHHHc
Confidence            98873  43 345678899999999983

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.75  E-value=7.1e-05  Score=47.37  Aligned_cols=91  Identities=12%  Similarity=0.156  Sum_probs=65.1

Q ss_pred             CCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCC
Q 031686           48 RETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRK  124 (155)
Q Consensus        48 ~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~  124 (155)
                      .+.+.++.+++.+.++.|...-  .-.. ...+.++|+++.+ ..|+.+|.+.  +.++.+.||+..  +|+++++..  
T Consensus         8 ~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~vd~d~--~~~~~~~~~V~~--~Pt~i~~k~--   80 (103)
T d1syra_           8 QAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDE--VSEVTEKENITS--MPTFKVYKN--   80 (103)
T ss_dssp             HHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT--THHHHHHTTCCS--SSEEEEEET--
T ss_pred             HHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhcccc-eEEEeecccc--Ccceeeeeeeec--ceEEEEEEC--
Confidence            4556666776666666676553  2344 6688899999864 6799999986  678899999974  899998873  


Q ss_pred             Ce-eecCCCCCCHHHHHHHHHHH
Q 031686          125 RK-KYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       125 ~~-kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      |+ ...+.| .+.+.|.+||+.+
T Consensus        81 G~~v~~~~G-~~~~~l~~~i~k~  102 (103)
T d1syra_          81 GSSVDTLLG-ANDSALKQLIEKY  102 (103)
T ss_dssp             TEEEEEEES-CCHHHHHHHHHTT
T ss_pred             CEEEEEEeC-cCHHHHHHHHHhh
Confidence            43 233344 4688999999864

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.71  E-value=0.00024  Score=45.34  Aligned_cols=98  Identities=8%  Similarity=0.028  Sum_probs=68.4

Q ss_pred             CCeEecC-CCchhhhhc--CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686           41 PPMITYS-RETTPLILN--SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTS  114 (155)
Q Consensus        41 P~v~e~~-~~~~~~i~~--~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~  114 (155)
                      .+|.++. .+++...+.  +++++++-|...-  .-.. ...+.++|+++++.+.++.++.+.  ++.+.+.||+..  .
T Consensus         5 ~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~--~~~l~~~~~V~~--~   80 (111)
T d1xwaa_           5 AMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE--CEDIAMEYNISS--M   80 (111)
T ss_dssp             CCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCS--S
T ss_pred             CeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeec--CcchhhcCCCcc--c
Confidence            4566664 355655443  3445555565442  2245 778999999999999999999986  678899999974  8


Q ss_pred             ceEEEEecCCCe-eecCCCCCCHHHHHHHHHH
Q 031686          115 RVIAVASIRKRK-KYVLNGELTLSNVKSFALD  145 (155)
Q Consensus       115 P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~  145 (155)
                      |++.++..  |+ ...+.| .++++|++||+.
T Consensus        81 Pt~~~~~~--G~~v~~~~G-~~~~~l~~~I~~  109 (111)
T d1xwaa_          81 PTFVFLKN--GVKVEEFAG-ANAKRLEDVIKA  109 (111)
T ss_dssp             SEEEEEET--TEEEEEEES-CCHHHHHHHHHH
T ss_pred             cEEEEEEC--CEEEEEEeC-CCHHHHHHHHHh
Confidence            99998863  33 333444 367889999875

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=8e-05  Score=49.71  Aligned_cols=102  Identities=16%  Similarity=0.103  Sum_probs=72.9

Q ss_pred             ecCCCchhhhhcCCCceEEEE-eecC---ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686           45 TYSRETTPLILNSPLKLLWLF-AAVH---DSEA-KSIFQETARAFKGK-LLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA  118 (155)
Q Consensus        45 e~~~~~~~~i~~~~~~~v~lf-~~~~---~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~  118 (155)
                      .++.++++....+....++++ +...   .-.. .-.+.++|+++.+. +.++.+|.+.  +..+.+.||+..  +|+++
T Consensus        21 ~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~--~~~la~~~~V~~--~PT~~   96 (132)
T d2hfda1          21 PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--SEAIGDRFGVFR--FPATL   96 (132)
T ss_dssp             EECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHH--HHHHHHHHTCCS--CCEEE
T ss_pred             ccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecC--CHHHHHhhccCc--ceeEE
Confidence            456666766555543333333 2221   2344 67899999999875 7788999885  678899999975  89999


Q ss_pred             EEecCCCe-eecCCCCCCHHHHHHHHHHHHcCCCc
Q 031686          119 VASIRKRK-KYVLNGELTLSNVKSFALDFLGDKLR  152 (155)
Q Consensus       119 i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~Gkl~  152 (155)
                      ++..  |+ ...+.|..+.+.+.+||+.++...-+
T Consensus        97 ~~~~--G~~v~~~~G~~~~~~l~~~i~~ll~~~~e  129 (132)
T d2hfda1          97 VFTG--GNYRGVLNGIHPWAELINLMRGLVEPQQE  129 (132)
T ss_dssp             EEET--TEEEEEECCCSCHHHHHHHHHHHHSCSSC
T ss_pred             EEEc--CcEeeeecCCCCHHHHHHHHHHHhCcccc
Confidence            9863  43 33567889999999999999887644

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.00027  Score=45.10  Aligned_cols=95  Identities=8%  Similarity=0.003  Sum_probs=66.0

Q ss_pred             CCCchhhhhcC--CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEe
Q 031686           47 SRETTPLILNS--PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVAS  121 (155)
Q Consensus        47 ~~~~~~~i~~~--~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~  121 (155)
                      |.+.+++....  ++++++.|...-  .-.. ...|.++|+++.+ +.|+.+|.+.  ++.+.+.+|+..  +|++.++.
T Consensus         8 s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~-~~f~~vd~d~--~~~l~~~~~v~~--~Pt~~~~~   82 (107)
T d1gh2a_           8 SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ-AVFLEVDVHQ--CQGTAATNNISA--TPTFQFFR   82 (107)
T ss_dssp             SGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT--SHHHHHHTTCCS--SSEEEEEE
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhcccccccc-cccccccccc--chhhhhhcCcee--ceEEEEEE
Confidence            44566665543  333455565442  2345 7788999999875 8899999986  678889999974  89999986


Q ss_pred             cCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          122 IRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       122 ~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      . +.....+.| .+++.|++.|+.++.
T Consensus        83 ~-G~~v~~~~G-~~~~~l~~~i~k~le  107 (107)
T d1gh2a_          83 N-KVRIDQYQG-ADAVGLEEKIKQHLE  107 (107)
T ss_dssp             T-TEEEEEEES-SCHHHHHHHHHHHHC
T ss_pred             C-CEEEEEEeC-CCHHHHHHHHHHhhC
Confidence            3 222334445 478999999998763

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.68  E-value=0.00026  Score=45.53  Aligned_cols=95  Identities=14%  Similarity=0.099  Sum_probs=65.1

Q ss_pred             CCCchhhhh----cCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEE
Q 031686           47 SRETTPLIL----NSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAV  119 (155)
Q Consensus        47 ~~~~~~~i~----~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i  119 (155)
                      |.+++.+.+    ..+.++++.|...-  .-.. ...+.++++.+.+ +.|+.+|.+.  +..+.+.||+..  +|++.+
T Consensus        13 s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~~~--~~~l~~~~~V~~--~Pt~~~   87 (114)
T d1xfla_          13 TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDE--LKSVASDWAIQA--MPTFMF   87 (114)
T ss_dssp             SHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS-EEEEEEETTT--SHHHHHHTTCCS--SSEEEE
T ss_pred             CHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccc-cceeEEEeee--ceeeccccceee--eEEEEE
Confidence            444444433    34445566666542  2244 6688889988865 8899999996  678899999975  899998


Q ss_pred             EecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          120 ASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       120 ~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      +.. +.....+.| .+++.|.+||+.+++
T Consensus        88 ~~~-G~~v~~~~G-~~~~~l~~~i~k~la  114 (114)
T d1xfla_          88 LKE-GKILDKVVG-AKKDELQSTIAKHLA  114 (114)
T ss_dssp             EET-TEEEEEEES-CCHHHHHHHHHHHCC
T ss_pred             EEC-CEEEEEEeC-cCHHHHHHHHHHhhC
Confidence            863 222334444 478999999998864

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.67  E-value=0.00043  Score=44.15  Aligned_cols=98  Identities=13%  Similarity=0.112  Sum_probs=65.5

Q ss_pred             CCeEecCCCchhhh-hcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-----eEEEEEeCCCcchhhhhhhhCCCC
Q 031686           41 PPMITYSRETTPLI-LNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-----LLFVYSQIYPKLKGQIFDYFGVTC  111 (155)
Q Consensus        41 P~v~e~~~~~~~~i-~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-----i~F~~vd~~~~~~~~~~~~~gl~~  111 (155)
                      +.|.+++.+|+.++ .+++++.++.|..+-  .-.. ...+.++|+.+.+.     +.+...+...     ....+++. 
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~-   75 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATA-----NDVPDEIQ-   75 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTT-----SCCSSCCS-
T ss_pred             cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccch-----hhhccccc-
Confidence            35788999999875 466667777777653  2345 77889999988653     3444444442     22345665 


Q ss_pred             CCcceEEEEecC-CCeeecCCCCCCHHHHHHHHHH
Q 031686          112 YTSRVIAVASIR-KRKKYVLNGELTLSNVKSFALD  145 (155)
Q Consensus       112 ~~~P~v~i~~~~-~~~kY~~~~~~t~~~I~~Fi~~  145 (155)
                       .+|++.++... ......+.|..+.++|.+||++
T Consensus        76 -~~Pti~~f~~g~~~~~~~~~g~~~~~~l~~fi~~  109 (116)
T d2djja1          76 -GFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE  109 (116)
T ss_dssp             -SSSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHH
T ss_pred             -CCCEEEEEECCccCceEEecCCCCHHHHHHHHHH
Confidence             48999988542 1223345677899999999986

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=7.3e-06  Score=53.21  Aligned_cols=31  Identities=26%  Similarity=0.384  Sum_probs=28.0

Q ss_pred             eccCCcCHHHHHHHHHhCCCCCeEecCCCch
Q 031686           21 FSDVSFTISVIDDFISLNKIPPMITYSRETT   51 (155)
Q Consensus        21 ~y~g~~~~~~l~~fI~~~~~P~v~e~~~~~~   51 (155)
                      .|+|+++.++|.+||+.+++|+|+|+|++|+
T Consensus        80 ~~~~~~~~~~l~~fi~~~~~PlV~e~~~e~A  110 (110)
T d1bjxa_          80 NFEGEVTKENLLDFIKHNQLPLVIEFTEQTA  110 (110)
T ss_dssp             CCCSCCCHHHHHHHHHHHSSCCCSSCCCTTC
T ss_pred             ccCCCCCHHHHHHHHHHcCcCcEEecCCCCC
Confidence            3568899999999999999999999999874

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00026  Score=44.79  Aligned_cols=97  Identities=9%  Similarity=0.148  Sum_probs=66.2

Q ss_pred             eEecC-CCchhhhhcC--CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686           43 MITYS-RETTPLILNS--PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRV  116 (155)
Q Consensus        43 v~e~~-~~~~~~i~~~--~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~  116 (155)
                      |.+++ .+.+++..+.  ++++++.|...-  .-.. ...+.++++++.+ ..|+.+|.+.  +..+.+.+|+..  +|+
T Consensus         2 v~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~d~--~~~~~~~~~V~~--~Pt   76 (105)
T d2ifqa1           2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDD--CQDVASECEVKC--MPT   76 (105)
T ss_dssp             CEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT--CHHHHHHTTCCB--SSE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhcccccc-ceeeeccccc--CHhHHHHcCceE--EEE
Confidence            44553 3556666543  334555566542  2344 6788889988865 6799999996  678899999974  899


Q ss_pred             EEEEecCCCe-eecCCCCCCHHHHHHHHHHHH
Q 031686          117 IAVASIRKRK-KYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       117 v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      +.++..  |+ ...+.| .+++.|+++|++++
T Consensus        77 ~~~~~~--G~~v~~~~G-~~~~~l~~~i~~~l  105 (105)
T d2ifqa1          77 FQFFKK--GQKVGEFSG-ANKEKLEATINELV  105 (105)
T ss_dssp             EEEEET--TEEEEEEES-CCHHHHHHHHHHHC
T ss_pred             EEEEEC--CEEEEEEeC-CCHHHHHHHHHhhC
Confidence            999863  32 233445 47899999999864

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=97.56  E-value=0.00026  Score=45.46  Aligned_cols=89  Identities=13%  Similarity=0.085  Sum_probs=62.5

Q ss_pred             hhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCe-
Q 031686           51 TPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRK-  126 (155)
Q Consensus        51 ~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~-  126 (155)
                      +.+..++++++++-|...-  .-.. ...|.++|+++.+ ..|+.+|.+.  .+.+.+.||+..  +|+++++..  |+ 
T Consensus        19 l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d~--~~~l~~~~~I~~--~Pt~~~~k~--G~~   91 (113)
T d1ti3a_          19 FEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDE--LKAVAEEWNVEA--MPTFIFLKD--GKL   91 (113)
T ss_dssp             HHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS-EEEEEEETTT--CHHHHHHHHCSS--TTEEEEEET--TEE
T ss_pred             HHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCC-ceEEeeeeec--cccccccCeecc--cceEEEEEC--CEE
Confidence            3444445555566666442  2344 6688899998864 7899999986  678899999975  899999873  43 


Q ss_pred             eecCCCCCCHHHHHHHHHHHH
Q 031686          127 KYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       127 kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      ...+.| .+++.|.+||+.+.
T Consensus        92 v~~~~G-~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          92 VDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEEEC-CCTTHHHHHHHHHH
T ss_pred             EEEEcC-CCHHHHHHHHHHHh
Confidence            233344 47789999999874

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.41  E-value=0.0002  Score=43.69  Aligned_cols=77  Identities=13%  Similarity=0.121  Sum_probs=57.6

Q ss_pred             EEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHH
Q 031686           62 LWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSN  138 (155)
Q Consensus        62 v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~  138 (155)
                      +.+|....  .=.. ...+.++|+++.+++.|+.+|.+.  ++.+.+.||+..  +|++.+ +.  ..+|  .|..+++.
T Consensus         5 v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~--~~~l~~~~~V~~--~Pt~~~-~~--~~~~--~G~~~~~~   75 (85)
T d1nhoa_           5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMV--DREKAIEYGLMA--VPAIAI-NG--VVRF--VGAPSREE   75 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTT--CGGGGGGTCSSC--SSEEEE-TT--TEEE--ECSSCCHH
T ss_pred             EEEEECCCCcchHHHHHHHhhhccccccccccccccccc--chhhHHhcCceE--eCEEEE-CC--cEEE--EcCCCHHH
Confidence            44555442  2234 678899999999999999999986  678899999974  899865 32  1244  36679999


Q ss_pred             HHHHHHHHH
Q 031686          139 VKSFALDFL  147 (155)
Q Consensus       139 I~~Fi~~f~  147 (155)
                      |.+||++-+
T Consensus        76 l~~~i~~~l   84 (85)
T d1nhoa_          76 LFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999998754

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.21  E-value=0.001  Score=40.08  Aligned_cols=77  Identities=17%  Similarity=0.204  Sum_probs=56.0

Q ss_pred             EEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHH
Q 031686           62 LWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSN  138 (155)
Q Consensus        62 v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~  138 (155)
                      +++|...-  .=.. ...+.++|+++.+.+.++.+|.+.  +.++++.||+.+  +|++++..  .+ +|  .|..+.+.
T Consensus         6 v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~--~~~la~~~~V~~--~Pt~~i~~--~g-~~--~G~~~~~~   76 (85)
T d1fo5a_           6 IELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVME--NPQKAMEYGIMA--VPTIVING--DV-EF--IGAPTKEA   76 (85)
T ss_dssp             EEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSS--SCCTTTSTTTCC--SSEEEETT--EE-EC--CSSSSSHH
T ss_pred             EEEEECCCCcChHhhhhhccccccccccccccccccccc--cccccccCCceE--eeEEEEEC--Cc-EE--ECCCCHHH
Confidence            55565442  2233 567888999998889999999886  678889999974  89986532  23 33  36678999


Q ss_pred             HHHHHHHHH
Q 031686          139 VKSFALDFL  147 (155)
Q Consensus       139 I~~Fi~~f~  147 (155)
                      |.+||++.+
T Consensus        77 l~~~i~~~L   85 (85)
T d1fo5a_          77 LVEAIKKRL   85 (85)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            999998763

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.73  E-value=0.014  Score=35.89  Aligned_cols=83  Identities=10%  Similarity=-0.047  Sum_probs=56.6

Q ss_pred             hhhhcCCCce-EEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCee
Q 031686           52 PLILNSPLKL-LWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKK  127 (155)
Q Consensus        52 ~~i~~~~~~~-v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~k  127 (155)
                      +++-+.+.+. +++|+...  .=.. ...+.++|..+ .++.|..+|.+.  +.++++.+|+..  +|++.+ +   ++ 
T Consensus         8 e~ik~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~-~~i~~~~vd~~~--~~~l~~~~~I~~--vPt~~~-n---g~-   77 (96)
T d1hyua4           8 EQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLN-PRIKHTAIDGGT--FQNEITERNVMG--VPAVFV-N---GK-   77 (96)
T ss_dssp             HHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC-TTEEEEEEETTT--CHHHHHHTTCCS--SSEEEE-T---TE-
T ss_pred             HHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhC-CceEEEEEeccc--chHHHhhccccc--ccEEEE-C---CE-
Confidence            3444444556 55676553  2244 67788888775 469999999996  688999999975  899854 3   32 


Q ss_pred             ecCCCCCCHHHHHHHHH
Q 031686          128 YVLNGELTLSNVKSFAL  144 (155)
Q Consensus       128 Y~~~~~~t~~~I~~Fi~  144 (155)
                      ....|..+.++|.++|+
T Consensus        78 ~~~~G~~~~~~l~~~le   94 (96)
T d1hyua4          78 EFGQGRMTLTEIVAKVD   94 (96)
T ss_dssp             EEEESCCCHHHHHHHHC
T ss_pred             EEEecCCCHHHHHHHHh
Confidence            22346778888887763

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0083  Score=39.69  Aligned_cols=59  Identities=7%  Similarity=-0.014  Sum_probs=46.6

Q ss_pred             ceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686           60 KLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI  122 (155)
Q Consensus        60 ~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~  122 (155)
                      ++++-|...-  .-.. ...+.++|+++.+.+.|+.+|.+.  ++.+.+.|++..  .|++.++..
T Consensus        24 ~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~--~~~la~~~~I~~--~PT~~~f~~   85 (137)
T d1qgva_          24 VVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITE--VPDFNKMYELYD--PCTVMFFFR   85 (137)
T ss_dssp             EEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT--CCTTTTSSCSCS--SCEEEEEET
T ss_pred             EEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccc--cchhhhhcCeee--EEEEEEEeC
Confidence            3355565543  2345 778999999999999999999996  678999999974  899998874

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0041  Score=41.68  Aligned_cols=64  Identities=14%  Similarity=0.201  Sum_probs=47.3

Q ss_pred             hcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcC
Q 031686           84 FKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGD  149 (155)
Q Consensus        84 ~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~G  149 (155)
                      ...+++++.++.+..+...+.+.|++..  +|+++++++.+++....-+.+++++..+.++.|+..
T Consensus        74 l~~~fV~~~v~~~~~e~~~~~~~y~v~~--~Pti~~idp~~ge~v~~~~~~~~~~fl~~L~~fl~~  137 (147)
T d2dlxa1          74 IREHFIFWQVYHDSEEGQRYIQFYKLGD--FPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGE  137 (147)
T ss_dssp             HHHTEEEEEEESSSHHHHHHHHHHTCCS--SSEEEEECTTTCCCCEEESSCCHHHHHHHHHHHHHH
T ss_pred             HhhheeEeeecccchhhhhhhhheecCc--eeEEEEEeCCCCeEecccCCCCHHHHHHHHHHHHhh
Confidence            3446889999988766778889999874  999999998666543333457888877777777753

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.05  Score=34.61  Aligned_cols=66  Identities=18%  Similarity=0.228  Sum_probs=46.6

Q ss_pred             HHHHHHHHHhhcCceEEEEEeCCCc-----chhhhhhhhCCCCCCcceEEEEecCCCeeecCCCC-CCHHHHHHHHH
Q 031686           74 KSIFQETARAFKGKLLFVYSQIYPK-----LKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGE-LTLSNVKSFAL  144 (155)
Q Consensus        74 ~~~~~~vA~~~~~~i~F~~vd~~~~-----~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~-~t~~~I~~Fi~  144 (155)
                      ...+.++|+++++++.|+.+|.+..     .+..+.+.||+..  +|++.+++.  +++-. ..+ .+++.|++|++
T Consensus        47 ~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~V~~--iPT~i~~~~--g~~l~-~~~~~~~~ll~~~~~  118 (119)
T d1woua_          47 EPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTA--VPTLLKYGT--PQKLV-ESECLQANLVEMLFS  118 (119)
T ss_dssp             HHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCS--SSEEEETTS--SCEEE-GGGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCCeEE--EEEEEEEEC--CeEEe-eeecCCHHHHHHHhc
Confidence            6678889999998999999997531     1345778899975  899988763  32221 112 46777888875

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.11  Score=32.21  Aligned_cols=65  Identities=8%  Similarity=0.103  Sum_probs=43.0

Q ss_pred             HHHHHhhcCceEEEEEeCCC--cchhhhhhhhCCCCCCcceEEEEecCCCe--eecCCCCCCHHHHHHHHHH
Q 031686           78 QETARAFKGKLLFVYSQIYP--KLKGQIFDYFGVTCYTSRVIAVASIRKRK--KYVLNGELTLSNVKSFALD  145 (155)
Q Consensus        78 ~~vA~~~~~~i~F~~vd~~~--~~~~~~~~~~gl~~~~~P~v~i~~~~~~~--kY~~~~~~t~~~I~~Fi~~  145 (155)
                      .++++.. +++.++.++...  .....+++.+|+.+  .|++++++.++..  .+.+.|..+++.+.+++++
T Consensus        48 ~~v~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~v~~--~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          48 PQVQKAL-ADTVLLQANVTANDAQDVALLKHLNVLG--LPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             HHHHHHT-TTSEEEEEECTTCCHHHHHHHHHTTCCS--SSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             HHHHHhc-cceEEEecccccchhHHHHHHhhhehhh--ceEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence            3444443 345666666532  12456778899975  8999999865322  2455678899999999875

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.80  E-value=0.25  Score=31.39  Aligned_cols=43  Identities=16%  Similarity=0.217  Sum_probs=30.8

Q ss_pred             hhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHH
Q 031686          102 QIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       102 ~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      .+.+.||+.  ..|.+.+++.+..-.|...|.++.+.++++++.+
T Consensus        93 ~~~~~~~v~--~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~l  135 (137)
T d1st9a_          93 QVLDAYDVS--PLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLI  135 (137)
T ss_dssp             HHHHHTTCC--SSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred             hhhhhhhcc--ccceEEEECCCCEEEEEEECCCCHHHHHHHHHhh
Confidence            344556654  3699999997643456667888999999988765

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.54  E-value=0.088  Score=37.05  Aligned_cols=101  Identities=11%  Similarity=0.057  Sum_probs=65.0

Q ss_pred             CCCeEecCC-CchhhhhcC-CCc--eEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCC
Q 031686           40 IPPMITYSR-ETTPLILNS-PLK--LLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCY  112 (155)
Q Consensus        40 ~P~v~e~~~-~~~~~i~~~-~~~--~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~  112 (155)
                      +-.|.+++. +.+...... +..  +++-|+...  .-.. ...|.++|++|.+ +.|+.++++.  . .+...|++.  
T Consensus        98 ~G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~-vkF~ki~~~~--~-~~~~~~~i~--  171 (217)
T d2trcp_          98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM-VKFCKIRASN--T-GAGDRFSSD--  171 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT-SEEEEEEHHH--H-TCSTTSCGG--
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc-ceEEEEcccc--c-hhHHhCCCC--
Confidence            456888864 656555443 322  344455443  2355 7789999999865 9999999874  2 355667765  


Q ss_pred             CcceEEEEecCCC-eee-cCC----CCCCHHHHHHHHHHH
Q 031686          113 TSRVIAVASIRKR-KKY-VLN----GELTLSNVKSFALDF  146 (155)
Q Consensus       113 ~~P~v~i~~~~~~-~kY-~~~----~~~t~~~I~~Fi~~f  146 (155)
                      .+|+++++....- ..+ .+.    .+++.+.|+.|+.++
T Consensus       172 ~lPtl~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         172 VLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             GCSEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             CCCeEEEEECCEEEEEEECccccccccCCHHHHHHHHHHc
Confidence            4899999974210 122 121    268999999998764

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=93.91  E-value=0.4  Score=30.66  Aligned_cols=62  Identities=19%  Similarity=0.109  Sum_probs=41.8

Q ss_pred             HHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686           81 ARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus        81 A~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      ..++......+..|.+    ..+.+.||+..  +|+.++++.++.-.|...|..+.+++++.|++.++
T Consensus        80 ~~~~~~~~~~~~~d~~----~~~~~~~~v~~--~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l~  141 (144)
T d1knga_          80 LGRYGNPFGRVGVDAN----GRASIEWGVYG--VPETFVVGREGTIVYKLVGPITPDNLRSVLLPQME  141 (144)
T ss_dssp             HHHHCCCCSEEEEETT----SHHHHHTTCCS--SCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred             HHHcCCcccccccccc----chhhhhcCccc--cceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence            3444444433444544    35778888864  89999999764445666678899999888877553

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.72  E-value=0.68  Score=29.33  Aligned_cols=85  Identities=14%  Similarity=0.180  Sum_probs=52.2

Q ss_pred             CCce-EEEEeecCC---hhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCC--CeeecC
Q 031686           58 PLKL-LWLFAAVHD---SEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRK--RKKYVL  130 (155)
Q Consensus        58 ~~~~-v~lf~~~~~---~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~--~~kY~~  130 (155)
                      ..|+ +++|.+.++   .+. ++-+.++|.- .+++.+...+.+.+.++...+.+|++  ..|+++|.+...  +-+|  
T Consensus        21 ~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-Sdki~~~~~~~~~~e~~~~~~~~~ve--r~Ps~~i~~~g~~~gIrF--   95 (119)
T d1a8la1          21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRID--RAPATTITQDGKDFGVRY--   95 (119)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCC--SSSEEEEEETTBCCSEEE--
T ss_pred             CCCEEEEEEecCCCchhHHHHHHHHHHHHhh-CCCeEEEEeccCcchhhhHHHhhccc--cCceEEEecCCcccceEE--
Confidence            3466 677775432   345 5566666643 56899988888765466788899996  489999887421  2233  


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 031686          131 NGELTLSNVKSFALDFL  147 (155)
Q Consensus       131 ~~~~t~~~I~~Fi~~f~  147 (155)
                      -|-..-..+..||.+++
T Consensus        96 ~GiP~GhEf~SlilaIl  112 (119)
T d1a8la1          96 FGLPAGHEFAAFLEDIV  112 (119)
T ss_dssp             ESCCCTTHHHHHHHHHH
T ss_pred             EeccCchhHHHHHHHHH
Confidence            12123344556666554

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=92.10  E-value=0.18  Score=32.24  Aligned_cols=45  Identities=9%  Similarity=0.087  Sum_probs=33.8

Q ss_pred             hhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686          102 QIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG  148 (155)
Q Consensus       102 ~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~  148 (155)
                      .+.+.||+..  +|++++++.++.-.+...|.++.+.+.+++++..+
T Consensus        97 ~~~~~~~v~~--~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~~a  141 (143)
T d2fy6a1          97 TIAQSLNISV--YPSWALIGKDGDVQRIVKGSINEAQALALIRDPNA  141 (143)
T ss_dssp             HHHHHTTCCS--SSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTS
T ss_pred             HHHHHcCCCc--cCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHhc
Confidence            4567777754  89999999753335555688999999999987654

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=91.85  E-value=0.76  Score=28.90  Aligned_cols=44  Identities=11%  Similarity=-0.050  Sum_probs=31.4

Q ss_pred             hhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHH
Q 031686          102 QIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFL  147 (155)
Q Consensus       102 ~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~  147 (155)
                      .+.+.||+..  +|+.++++.+..-.+...|.++.+.+.+.|+.++
T Consensus        85 ~~~~~~~v~~--~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll  128 (136)
T d1z5ye1          85 MLGLDLGVYG--APETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW  128 (136)
T ss_dssp             HHHHHHTCCS--BSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHH
T ss_pred             hHHHhcccCC--cceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHH
Confidence            5778888864  8999999976433555567788877766666554

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=91.28  E-value=1.4  Score=29.67  Aligned_cols=94  Identities=13%  Similarity=0.132  Sum_probs=55.1

Q ss_pred             CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCc---------ch------------------hhhhhhh
Q 031686           58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPK---------LK------------------GQIFDYF  107 (155)
Q Consensus        58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~---------~~------------------~~~~~~~  107 (155)
                      ++++++.|....  .-.. ...+.+++++|++++.|+.+.+...         ..                  ..+.+.|
T Consensus        32 Gk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~~  111 (187)
T d2cvba1          32 EPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAY  111 (187)
T ss_dssp             SSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHT
T ss_pred             CCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhcccc
Confidence            345555555332  1123 5667777888877777776653210         01                  1233334


Q ss_pred             CCCCCCcceEEEEecCCCeeec--CCC------CCCHHHHHHHHHHHHcCCCcc
Q 031686          108 GVTCYTSRVIAVASIRKRKKYV--LNG------ELTLSNVKSFALDFLGDKLRN  153 (155)
Q Consensus       108 gl~~~~~P~v~i~~~~~~~kY~--~~~------~~t~~~I~~Fi~~f~~Gkl~p  153 (155)
                      |+.  ..|.+.+++.+..-.|.  +++      +.+...|+.=|++.++|+--+
T Consensus       112 ~v~--~~P~~~liD~~G~i~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~g~~~~  163 (187)
T d2cvba1         112 RAL--RTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEEPP  163 (187)
T ss_dssp             TCC--EESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCCCC
T ss_pred             ccc--ceeeEEEEcCCCeEEEEeeecCCCCCCCCCCHHHHHHHHHHHHcCCCCC
Confidence            443  26999999975333552  321      356678999999999997544

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=91.16  E-value=1  Score=28.54  Aligned_cols=41  Identities=10%  Similarity=-0.024  Sum_probs=27.6

Q ss_pred             hhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHH
Q 031686          103 IFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD  145 (155)
Q Consensus       103 ~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~  145 (155)
                      +.+.||+.  ..|++++++.+..-.|...|..+.+.+++-+++
T Consensus       102 ~~~~~~v~--~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1         102 LTDAFENE--YVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             HHHHTCCC--CSSEEEEECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred             hHHHcCCC--cCCEEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence            44455553  379999998764335655677788888877765

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.72  E-value=1.4  Score=27.37  Aligned_cols=42  Identities=14%  Similarity=0.249  Sum_probs=29.5

Q ss_pred             hhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHH
Q 031686          102 QIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDF  146 (155)
Q Consensus       102 ~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f  146 (155)
                      .+.+.||+..  +|..++++.+..-.| ..|..+.+.|.+.|+..
T Consensus        92 ~~~~~~~v~~--~P~~~iiD~~G~i~~-~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1          92 SVWANFGVTQ--QPAYAFVDPHGNVDV-VRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             HHHHHTTCCS--SSEEEEECTTCCEEE-EESCCCHHHHHHHHHHH
T ss_pred             hHHHhcCCCc--cCeEEEECCCCeEEE-EECCCCHHHHHHHHHhh
Confidence            4556667653  799999987533344 24678999999988764

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.50  E-value=0.74  Score=27.85  Aligned_cols=80  Identities=15%  Similarity=0.147  Sum_probs=45.1

Q ss_pred             CCCceEEEEeecC-Ch-hH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCC
Q 031686           57 SPLKLLWLFAAVH-DS-EA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGE  133 (155)
Q Consensus        57 ~~~~~v~lf~~~~-~~-~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~  133 (155)
                      ...|.+++|.... .. +. ...|.+++.++.  ..++.+|.+  ....+.+.||..   .|.+.| +.  ...  +-+.
T Consensus        14 ~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~--~~~v~vd~~--~~~~l~~~y~~~---VPvl~i-dg--~~~--~~g~   81 (100)
T d1wjka_          14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI--LQEVDITLP--ENSTWYERYKFD---IPVFHL-NG--QFL--MMHR   81 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE--EEEEETTSS--TTHHHHHHSSSS---CSEEEE-SS--SEE--EESS
T ss_pred             CCCCEEEEEECCCCCChHHHHHHHHHhhhhcc--eEEEecccc--cCHHHHHHhccc---CCceee-cC--ceE--EeCC
Confidence            3455666665443 11 22 334444443332  334444444  367888899974   897765 32  122  2245


Q ss_pred             CCHHHHHHHHHHHHc
Q 031686          134 LTLSNVKSFALDFLG  148 (155)
Q Consensus       134 ~t~~~I~~Fi~~f~~  148 (155)
                      ++.+.|+++++++..
T Consensus        82 ~d~~~L~~~L~~l~~   96 (100)
T d1wjka_          82 VNTSKLEKQLRKLSG   96 (100)
T ss_dssp             CCHHHHHHHHHSSSC
T ss_pred             CCHHHHHHHHHHHhc
Confidence            889999999987644

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.81  E-value=0.5  Score=29.54  Aligned_cols=20  Identities=5%  Similarity=0.099  Sum_probs=18.1

Q ss_pred             EeccCCcCHHHHHHHHHhCC
Q 031686           20 IFSDVSFTISVIDDFISLNK   39 (155)
Q Consensus        20 ~~y~g~~~~~~l~~fI~~~~   39 (155)
                      ..|+|++|.++|.+||+++.
T Consensus        98 ~~y~G~rt~~~l~~fi~~~~  117 (122)
T d1g7ea_          98 VPYSGAVKVGAIQRWLKGQG  117 (122)
T ss_dssp             EEEESCCCHHHHHHHHHTTS
T ss_pred             eecCCCCCHHHHHHHHHhcc
Confidence            46899999999999999985