Citrus Sinensis ID: 031691

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKADADISAASIQSKTVTSKLKGAAGIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTEEYSVKKQ
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHccccEEEEEcccccEEEcccccccccEEEEEEccccccccccccccccccccccEEEcccccHHHHHHccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHcccEEEEEEccccEEEEEccccccccEEEEEEEcccccccEEEcccccccccccEEEEcccccccHHHcccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHccHHccHccc
Coil and Loop (DISEMBL)
metdgtwagHMELQAASLVTHsnicihrhmsprwyirnfDYHEARMIHLsyhdgehyngvrlkedscigsarpiiikadadisaasiqSKTVTSKLKGAAGIINAGSIKLVMagsgcensEKVEEVLLQVGGDVDAAIEFLIAeqgteeysvkkq
Flexible Loop (DISEMBL)
METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKADADISAASIQSKtvtsklkgaagiINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLiaeqgteeysvkkq
Low Complexity Region (SEG)
METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPiiikadadisaasiQSKTVTSKLKGAAGIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTEEYSVKKQ
Disordered region (IsUnstruct)
******WAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKADADISAASIQSKTVTSKLKGAAGIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE***********
Disordered Region (DISOPRED)
**TDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLK******************************************GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFL**************
Disordered Region (DISEMBL)
********GHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKADADISAASIQSKTVTSKLKGAAGIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG*********
Disordered Region (DISPRO)
*****TWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKADA**********************INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKADADISAASIQSKTVTSKLKGAAGIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTEEYSVKKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
Q5T2D3	398	OTU domain-containing pro	yes	no	0.587	0.228	0.308	0.0001

>sp|Q5T2D3|OTUD3_HUMAN OTU domain-containing protein 3 OS=Homo sapiens GN=OTUD3 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 5   GTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKE 64
           GT+AG+  + A +     N+ IH+  +P W IR  +    R +H++Y  GEHY+ VR   
Sbjct: 131 GTFAGNDAIVAFARNHQLNVVIHQLNAPLWQIRGTEKSSVRELHIAYRYGEHYDSVRRIN 190

Query: 65  DSCIGSARPIIIKADADISAASIQSKTVTSKLKG 98
           D+   S  P  ++ D  +      +K    K KG
Sbjct: 191 DN---SEAPAHLQTDFQMLHQDESNKREKIKTKG 221

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
356565555	382	PREDICTED: OTU domain-containing protein	0.974	0.395	0.751	6e-62
296082384	385	unnamed protein product [Vitis vinifera]	0.961	0.387	0.768	1e-61
225438775	467	PREDICTED: OTU domain-containing protein	0.961	0.319	0.768	3e-61
224081718	349	predicted protein [Populus trichocarpa]	0.974	0.432	0.730	1e-60
255565284	371	OTU domain-containing protein, putative	0.974	0.407	0.712	4e-58
23306370	375	putative protein [Arabidopsis thaliana]	0.954	0.394	0.706	1e-57
10177604	382	unnamed protein product [Arabidopsis tha	0.954	0.387	0.706	2e-57
30698282	375	SEC-C motif-containing protein / OTU-lik	0.954	0.394	0.706	2e-57
42573818	374	SEC-C motif-containing protein / OTU-lik	0.954	0.395	0.706	3e-57
356514204	383	PREDICTED: uncharacterized protein LOC10	0.974	0.394	0.712	2e-56

>gi|356565555|ref|XP_003551005.1| PREDICTED: OTU domain-containing protein 3-like [Glycine max]

 Score =  241 bits (616), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 115/153 (75%), Positives = 127/153 (83%), Gaps = 2/153 (1%)

Query: 1   METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGV 60
           ME DGTWAGHMELQAASLVT SNICIHR+MSPRWYIRNFD    RMIHLSYHDGEHYN V
Sbjct: 101 MENDGTWAGHMELQAASLVTRSNICIHRNMSPRWYIRNFDNRGVRMIHLSYHDGEHYNSV 160

Query: 61  RLKEDSCIGSARPIIIKADADISAASIQSKTVTSKLKGAAG--IINAGSIKLVMAGSGCE 118
           RLK+D C G+ARPI+I+ADAD+S  S Q+K V +K  G AG      GSIKLVMAG+GCE
Sbjct: 161 RLKDDPCDGAARPIVIEADADLSVPSHQTKVVGNKFHGRAGWEAFQPGSIKLVMAGTGCE 220

Query: 119 NSEKVEEVLLQVGGDVDAAIEFLIAEQGTEEYS 151
           N+EKVE++L QV GDVDAAIEFLIAEQGTEE S
Sbjct: 221 NAEKVEQILEQVNGDVDAAIEFLIAEQGTEECS 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082384|emb|CBI21389.3| unnamed protein product [Vitis vinifera]

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/151 (76%), Positives = 128/151 (84%), Gaps = 2/151 (1%)

Query: 1   METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGV 60
           ME DGTWAGHMELQAASLVT SNICIHRHMSPRWYI+NF+   ARMIHLSYHDGEHYN V
Sbjct: 101 MEKDGTWAGHMELQAASLVTRSNICIHRHMSPRWYIQNFNASGARMIHLSYHDGEHYNSV 160

Query: 61  RLKEDSCIGSARPIIIKADADISAASIQSKTVTSKLKGAAG--IINAGSIKLVMAGSGCE 118
           RLKED C G ARPIIIKAD D+S AS Q K  +SK K  AG  II+AGSIKLVM GSGCE
Sbjct: 161 RLKEDPCDGPARPIIIKADTDLSVASHQVKGASSKSKSGAGRNIIDAGSIKLVMVGSGCE 220

Query: 119 NSEKVEEVLLQVGGDVDAAIEFLIAEQGTEE 149
           N+EKVE+VL+++ GDVDAAIE+LIAE+ TEE
Sbjct: 221 NAEKVEQVLVELSGDVDAAIEYLIAERETEE 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438775|ref|XP_002278347.1| PREDICTED: OTU domain-containing protein 3-like [Vitis vinifera]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 116/151 (76%), Positives = 128/151 (84%), Gaps = 2/151 (1%)

Query: 1   METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGV 60
           ME DGTWAGHMELQAASLVT SNICIHRHMSPRWYI+NF+   ARMIHLSYHDGEHYN V
Sbjct: 101 MEKDGTWAGHMELQAASLVTRSNICIHRHMSPRWYIQNFNASGARMIHLSYHDGEHYNSV 160

Query: 61  RLKEDSCIGSARPIIIKADADISAASIQSKTVTSKLKGAAG--IINAGSIKLVMAGSGCE 118
           RLKED C G ARPIIIKAD D+S AS Q K  +SK K  AG  II+AGSIKLVM GSGCE
Sbjct: 161 RLKEDPCDGPARPIIIKADTDLSVASHQVKGASSKSKSGAGRNIIDAGSIKLVMVGSGCE 220

Query: 119 NSEKVEEVLLQVGGDVDAAIEFLIAEQGTEE 149
           N+EKVE+VL+++ GDVDAAIE+LIAE+ TEE
Sbjct: 221 NAEKVEQVLVELSGDVDAAIEYLIAERETEE 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081718|ref|XP_002306480.1| predicted protein [Populus trichocarpa] gi|222855929|gb|EEE93476.1| predicted protein [Populus trichocarpa]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/152 (73%), Positives = 129/152 (84%), Gaps = 1/152 (0%)

Query: 1   METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGV 60
           ME DGTWAGHMELQAASLVTHSNIC+HR+MSPRWYIRNFD H ARM+HLSYHD EHYN V
Sbjct: 100 MEKDGTWAGHMELQAASLVTHSNICVHRYMSPRWYIRNFDQHGARMVHLSYHDEEHYNSV 159

Query: 61  RLKEDSCIGSARPIIIKADADISAASIQSKTVTSKLKG-AAGIINAGSIKLVMAGSGCEN 119
           R K+D C G A+PIIIK DAD+SA S+Q+K V+S   G A    +AGS+KLVMAGSGCEN
Sbjct: 160 RSKDDPCNGPAQPIIIKVDADLSATSVQAKAVSSTKAGIAKDSFDAGSLKLVMAGSGCEN 219

Query: 120 SEKVEEVLLQVGGDVDAAIEFLIAEQGTEEYS 151
           +EKV++VLL+V GDVDAAIEFLIAEQ ++ +S
Sbjct: 220 AEKVKQVLLEVDGDVDAAIEFLIAEQESDSFS 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565284|ref|XP_002523634.1| OTU domain-containing protein, putative [Ricinus communis] gi|223537196|gb|EEF38829.1| OTU domain-containing protein, putative [Ricinus communis]

 Score =  229 bits (583), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 109/153 (71%), Positives = 127/153 (83%), Gaps = 2/153 (1%)

Query: 1   METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGV 60
           ME DGTWAGHMELQAASLVT SNICIH++MSPRWYIRNFD   A M+HLSYHD EHYN V
Sbjct: 101 MEKDGTWAGHMELQAASLVTRSNICIHQYMSPRWYIRNFDERGACMVHLSYHDEEHYNSV 160

Query: 61  RLKEDSCIGSARPIIIKADADISAASIQSKTVTSKLKGAAGI--INAGSIKLVMAGSGCE 118
           RLKED+CIG ARPIIIKADAD+SA + Q+KT  SK KG A    I+  SIK+V+AGSGC+
Sbjct: 161 RLKEDTCIGPARPIIIKADADLSATTCQAKTAASKSKGGAAKNSIDPSSIKVVIAGSGCQ 220

Query: 119 NSEKVEEVLLQVGGDVDAAIEFLIAEQGTEEYS 151
           +++KVE+VLLQV GDVDAAIEFL AE+  ++ S
Sbjct: 221 DAQKVEQVLLQVDGDVDAAIEFLRAEREADDSS 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23306370|gb|AAN17412.1| putative protein [Arabidopsis thaliana] gi|25084238|gb|AAN72203.1| putative protein [Arabidopsis thaliana]

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/150 (70%), Positives = 124/150 (82%), Gaps = 2/150 (1%)

Query: 1   METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGV 60
           M+ DGTWAG+MELQAASLVT SNICIHR+MSPRWYIRNF+    RMIHLSYHDGEHYN V
Sbjct: 99  MDDDGTWAGNMELQAASLVTRSNICIHRNMSPRWYIRNFEDTRTRMIHLSYHDGEHYNSV 158

Query: 61  RLKEDSCIGSARPIIIKADADISAASIQSKTVTSKLKGAAGI--INAGSIKLVMAGSGCE 118
           R KED+C G ARP++I+ADA +SAAS Q+K   SK K  A    +NAG+IK+VM+GS C+
Sbjct: 159 RSKEDACGGPARPVVIEADAKVSAASKQAKATESKSKNKADKCHVNAGAIKVVMSGSCCD 218

Query: 119 NSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148
           N+EK E+VLLQV GDVDAAIEFLIA+QG E
Sbjct: 219 NTEKAEQVLLQVNGDVDAAIEFLIADQGME 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177604|dbj|BAB10951.1| unnamed protein product [Arabidopsis thaliana]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/150 (70%), Positives = 124/150 (82%), Gaps = 2/150 (1%)

Query: 1   METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGV 60
           M+ DGTWAG+MELQAASLVT SNICIHR+MSPRWYIRNF+    RMIHLSYHDGEHYN V
Sbjct: 106 MDDDGTWAGNMELQAASLVTRSNICIHRNMSPRWYIRNFEDTRTRMIHLSYHDGEHYNSV 165

Query: 61  RLKEDSCIGSARPIIIKADADISAASIQSKTVTSKLKGAAGI--INAGSIKLVMAGSGCE 118
           R KED+C G ARP++I+ADA +SAAS Q+K   SK K  A    +NAG+IK+VM+GS C+
Sbjct: 166 RSKEDACGGPARPVVIEADAKVSAASKQAKATESKSKNKADKCHVNAGAIKVVMSGSCCD 225

Query: 119 NSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148
           N+EK E+VLLQV GDVDAAIEFLIA+QG E
Sbjct: 226 NTEKAEQVLLQVNGDVDAAIEFLIADQGME 255

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30698282|ref|NP_201518.2| SEC-C motif-containing protein / OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|332010926|gb|AED98309.1| SEC-C motif-containing protein / OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|407078848|gb|AFS88955.1| OTU-containing deubiquitinating enzyme OTU7 isoform i [Arabidopsis thaliana]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/150 (70%), Positives = 124/150 (82%), Gaps = 2/150 (1%)

Query: 1   METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGV 60
           M+ DGTWAG+MELQAASLVT SNICIHR+MSPRWYIRNF+    RMIHLSYHDGEHYN V
Sbjct: 99  MDDDGTWAGNMELQAASLVTRSNICIHRNMSPRWYIRNFEDTRTRMIHLSYHDGEHYNSV 158

Query: 61  RLKEDSCIGSARPIIIKADADISAASIQSKTVTSKLKGAAGI--INAGSIKLVMAGSGCE 118
           R KED+C G ARP++I+ADA +SAAS Q+K   SK K  A    +NAG+IK+VM+GS C+
Sbjct: 159 RSKEDACGGPARPVVIEADAKVSAASKQAKATESKSKNKADKCHVNAGAIKVVMSGSCCD 218

Query: 119 NSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148
           N+EK E+VLLQV GDVDAAIEFLIA+QG E
Sbjct: 219 NTEKAEQVLLQVNGDVDAAIEFLIADQGME 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573818|ref|NP_975005.1| SEC-C motif-containing protein / OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|332010927|gb|AED98310.1| SEC-C motif-containing protein / OTU-like cysteine protease family protein [Arabidopsis thaliana]

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/150 (70%), Positives = 124/150 (82%), Gaps = 2/150 (1%)

Query: 1   METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGV 60
           M+ DGTWAG+MELQAASLVT SNICIHR+MSPRWYIRNF+    RMIHLSYHDGEHYN V
Sbjct: 98  MDDDGTWAGNMELQAASLVTRSNICIHRNMSPRWYIRNFEDTRTRMIHLSYHDGEHYNSV 157

Query: 61  RLKEDSCIGSARPIIIKADADISAASIQSKTVTSKLKGAAGI--INAGSIKLVMAGSGCE 118
           R KED+C G ARP++I+ADA +SAAS Q+K   SK K  A    +NAG+IK+VM+GS C+
Sbjct: 158 RSKEDACGGPARPVVIEADAKVSAASKQAKATESKSKNKADKCHVNAGAIKVVMSGSCCD 217

Query: 119 NSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148
           N+EK E+VLLQV GDVDAAIEFLIA+QG E
Sbjct: 218 NTEKAEQVLLQVNGDVDAAIEFLIADQGME 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514204|ref|XP_003525796.1| PREDICTED: uncharacterized protein LOC100782446 [Glycine max]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/153 (71%), Positives = 121/153 (79%), Gaps = 2/153 (1%)

Query: 1   METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGV 60
           METDGTWAGHMELQAAS VT SN+CIHR  SPRWYIRNF     RMIHLSYHDGEHYN V
Sbjct: 119 METDGTWAGHMELQAASPVTRSNVCIHRVSSPRWYIRNFGDRGIRMIHLSYHDGEHYNSV 178

Query: 61  RLKEDSCIGSARPIIIKADADISAASIQSKTVTSKLKGAAG--IINAGSIKLVMAGSGCE 118
           RLK+D   G ARPI+IKADAD+S  S Q+K V +K  G AG      GSI++VMAG+GCE
Sbjct: 179 RLKDDPFDGPARPIVIKADADLSVPSHQTKVVDNKPHGRAGREAFQPGSIRMVMAGTGCE 238

Query: 119 NSEKVEEVLLQVGGDVDAAIEFLIAEQGTEEYS 151
           N+EKVE++L QV GDVDAAIEFLIAEQ TEE S
Sbjct: 239 NAEKVEQILEQVNGDVDAAIEFLIAEQRTEECS 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:2155588	375	AT5G67170 [Arabidopsis thalian	0.954	0.394	0.653	9.8e-48
DICTYBASE|DDB_G0267906	438	DDB_G0267906 "OTU domain conta	0.393	0.139	0.548	1.9e-16
ASPGD|ASPL0000061651	472	AN0173 [Emericella nidulans (t	0.832	0.273	0.263	5.4e-05
GENEDB_PFALCIPARUM|PF10_0308	938	PF10_0308 "OTU-like cysteine p	0.380	0.062	0.383	0.00013
UNIPROTKB|Q8IJ91	938	PF10_0308 "OTU-like cysteine p	0.380	0.062	0.383	0.00013

TAIR|locus:2155588 AT5G67170 [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 98/150 (65%), Positives = 112/150 (74%)

Query:     1 METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGV 60
             M+ DGTWAG+MELQAASLVT SNICIHR+MSPRWYIRNF+    RMIHLSYHDGEHYN V
Sbjct:    99 MDDDGTWAGNMELQAASLVTRSNICIHRNMSPRWYIRNFEDTRTRMIHLSYHDGEHYNSV 158

Query:    61 RLKEDSCIGSARPXXXXXXXXXXXXXXQSKTVTSKLKGAAGI--INAGSIKLVMAGSGCE 118
             R KED+C G ARP              Q+K   SK K  A    +NAG+IK+VM+GS C+
Sbjct:   159 RSKEDACGGPARPVVIEADAKVSAASKQAKATESKSKNKADKCHVNAGAIKVVMSGSCCD 218

Query:   119 NSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148
             N+EK E+VLLQV GDVDAAIEFLIA+QG E
Sbjct:   219 NTEKAEQVLLQVNGDVDAAIEFLIADQGME 248

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

DICTYBASE|DDB_G0267906 DDB_G0267906 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 174 (66.3 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
 Identities = 34/62 (54%), Positives = 41/62 (66%)

Query:     1 METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRN-FDYHEARMIHLSYHDGEHYNG 59
             M  D TW GH+E+QAASL  + NI IH+   PRW I N F   + + IHLSYH+ EHYN 
Sbjct:   128 MREDATWGGHVEIQAASLAYNVNITIHQMDQPRWEIVNHFPPEKNKTIHLSYHNDEHYNS 187

Query:    60 VR 61
             VR
Sbjct:   188 VR 189

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000061651 AN0173 [Emericella nidulans (taxid:162425)]

 Score = 105 (42.0 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 39/148 (26%), Positives = 63/148 (42%)

Query:     4 DGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNF-DYH-----EARMIHLSYHDGEHY 57
             +G W G  E+QA       ++ ++      + I+NF D H     E   IH+++HD  HY
Sbjct:   173 NGVWGGAEEIQAFCQSFKKDVNVYT----MYGIQNFRDVHAPADEERETIHIAFHDFHHY 228

Query:    58 NGVRLKEDSCIGSARPXXXXXXXXXXXXXXQSKTVTSKLKGAAGIINAGSIKLVMAGSGC 117
             + VR     C G   P              Q+ T     +G   + +   I  + AG G 
Sbjct:   229 SSVR----HCEG---PHTGLPRIPKAEQSAQTSTAPPD-EGVVNVASPWKISAIQAGLGD 280

Query:   118 E-NSEKVEEVLLQVGGDVDAAIEFLIAE 144
             + + E + EVL Q  G++D A   L+ +
Sbjct:   281 KYDRETIVEVLEQCRGNIDNAFLNLLGD 308

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GENEDB_PFALCIPARUM|PF10_0308 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query:     4 DGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLK 63
             DGTW G +ELQA   +   NI I++       I+N    + + + L Y   EHYN VR K
Sbjct:   115 DGTWGGQLELQAVGEIYKVNILIYQENGCILEIKNHS-DDNKCLQLHYASSEHYNSVRFK 173

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IJ91 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query:     4 DGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLK 63
             DGTW G +ELQA   +   NI I++       I+N    + + + L Y   EHYN VR K
Sbjct:   115 DGTWGGQLELQAVGEIYKVNILIYQENGCILEIKNHS-DDNKCLQLHYASSEHYNSVRFK 173


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      155       141   0.00091  102 3  11 22  0.47    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  583 (62 KB)
  Total size of DFA:  145 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.30u 0.13s 12.43t   Elapsed:  00:00:01
  Total cpu time:  12.30u 0.13s 12.43t   Elapsed:  00:00:01
  Start:  Thu May  9 19:31:56 2013   End:  Thu May  9 19:31:57 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_V000542 hypothetical protein (349 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	155
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	3e-06

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 1   METDGTWAGHMELQAASLVTHSNICIHRHMSPR--WYIRNFDYHE----ARMIHLSYH-- 52
           +  DG W G++E+ A + +    I +++    R   YI+ +  +       +I LSY   
Sbjct: 57  ISKDGAWGGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPLNKKPVIRLSYLGL 116

Query: 53  --DGEHY 57
              G HY
Sbjct: 117 EYTGNHY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.57
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.19
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	97.65
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	97.45
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	97.39
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	97.23
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	97.23
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	97.08
smart00546	43	CUE Domain that may be involved in binding ubiquit	97.05
TIGR00264	116	alpha-NAC-related protein. This hypothetical prote	96.99
PRK06369	115	nac nascent polypeptide-associated complex protein	96.9
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	96.86
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	96.49
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	95.91
PF06972	60	DUF1296: Protein of unknown function (DUF1296); In	95.79
COG1308	122	EGD2 Transcription factor homologous to NACalpha-B	95.62
PF03474	39	DMA: DMRTA motif; InterPro: IPR005173 This region	94.34
TIGR00116	290	tsf translation elongation factor Ts. This protein	91.63
PRK12332	198	tsf elongation factor Ts; Reviewed	91.61
PRK09377	290	tsf elongation factor Ts; Provisional	91.42
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	87.96
KOG3991	256	consensus Uncharacterized conserved protein [Funct	87.55
COG0264	296	Tsf Translation elongation factor Ts [Translation,	86.75
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	82.57
PF02954	42	HTH_8: Bacterial regulatory protein, Fis family; I	81.88
KOG1071	340	consensus Mitochondrial translation elongation fac	81.81

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=1.2e-15  Score=128.55  Aligned_cols=63  Identities=30%  Similarity=0.482  Sum_probs=55.2

Q ss_pred             CCCCCccCCHHHHHHHHhhcCCcEEEEecCCCcEEEcccCCCCCceEEEEeec-----CccccccccCC
Q 031691            1 METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHD-----GEHYNGVRLKE   64 (155)
Q Consensus         1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~~~i~~~~~~~~~~i~LsYh~-----geHYnSvr~~~   64 (155)
                      |++++.|||++||.|+|.+|++||+||+.+.|+..++.. -...++|.|+||+     |+|||||....
T Consensus       232 I~~t~~WGgelEL~AlShvL~~PI~Vy~~~~p~~~~gee-y~kd~pL~lvY~rH~y~LGeHYNS~~~~~  299 (302)
T KOG2606|consen  232 IRNTAAWGGELELKALSHVLQVPIEVYQADGPILEYGEE-YGKDKPLILVYHRHAYGLGEHYNSVTPLK  299 (302)
T ss_pred             hhhhccccchHHHHHHHHhhccCeEEeecCCCceeechh-hCCCCCeeeehHHhHHHHHhhhccccccc
Confidence            578999999999999999999999999999999999852 2235899999996     99999998653

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.19  E-value=2.5e-11  Score=88.39  Aligned_cols=57  Identities=33%  Similarity=0.532  Sum_probs=46.6

Q ss_pred             CCCCCccCCHHHHHHHHhhcCCcEEEEecCCCc--EEEcc----cCCCCCceEEEEeec-----Cccc
Q 031691            1 METDGTWAGHMELQAASLVTHSNICIHRHMSPR--WYIRN----FDYHEARMIHLSYHD-----GEHY   57 (155)
Q Consensus         1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~--~~i~~----~~~~~~~~i~LsYh~-----geHY   57 (155)
                      |+++|+|||++||+|+|.+|+++|.||+...+.  +.+..    .+....++|+|.|+.     ++||
T Consensus        54 ~~~~~~Wg~~~el~a~a~~~~~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   54 MSKPGTWGGEIELQALANVLNRPIIVYSSSDGDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             HTSTTSHEEHHHHHHHHHHHTSEEEEECETTTBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred             hccccccCcHHHHHHHHHHhCCeEEEEEcCCCCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence            789999999999999999999999999885544  23321    123467899999998     9998

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=97.65  E-value=0.00016  Score=44.36  Aligned_cols=39  Identities=28%  Similarity=0.296  Sum_probs=33.1

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ  145 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~  145 (155)
                      .++.++.-.+-.+.+.|+.+|++++||+|.||+.||+.+
T Consensus         4 ~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~~   42 (42)
T PF02845_consen    4 MVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEMS   42 (42)
T ss_dssp             HHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence            456677767778999999999999999999999999864

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=97.45  E-value=0.00026  Score=42.21  Aligned_cols=35  Identities=26%  Similarity=0.504  Sum_probs=29.0

Q ss_pred             hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHH
Q 031691          105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFL  141 (155)
Q Consensus       105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~L  141 (155)
                      ++.++.++.- |+ +.+.++++|+.++||++.|+++|
T Consensus         3 ~~~v~~L~~m-Gf-~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    3 EEKVQQLMEM-GF-SREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             HHHHHHHHHH-TS--HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             HHHHHHHHHc-CC-CHHHHHHHHHHcCCCHHHHHHhC
Confidence            4567777766 74 68899999999999999999987

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.00011  Score=62.61  Aligned_cols=58  Identities=17%  Similarity=0.085  Sum_probs=45.0

Q ss_pred             CCCCCccCCHHHHHHHHhhcCCcEEEEecCCCcEEEcccCCCCCceEEEEee-----cCccccccc
Q 031691            1 METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYH-----DGEHYNGVR   61 (155)
Q Consensus         1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~~~i~~~~~~~~~~i~LsYh-----~geHYnSvr   61 (155)
                      |+-+..||+.+|+||||.++++++-++...+|.+.....  .....+-+.|.     .| ||||.+
T Consensus       243 ~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~ik~n~c--~~~~~~e~~~~~Ha~a~G-H~n~~~  305 (306)
T COG5539         243 VLFDASDGITIEIQQLASLLKNPHYYTNTASPSIKCNIC--GTGFVGEKDYYAHALATG-HYNFGE  305 (306)
T ss_pred             hcccccccchHHHHHHHHHhcCceEEeecCCceEEeecc--ccccchhhHHHHHHHhhc-CccccC
Confidence            567889999999999999999999999998886555432  23445555554     38 999985

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=97.23  E-value=0.00062  Score=41.98  Aligned_cols=40  Identities=18%  Similarity=0.209  Sum_probs=33.0

Q ss_pred             hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691          106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG  146 (155)
Q Consensus       106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~  146 (155)
                      +.|...|.-||| +.+..++.|+.+++|++.||..-++...
T Consensus         2 e~i~~F~~iTg~-~~~~A~~~L~~~~wdle~Av~~y~~~~~   41 (43)
T PF14555_consen    2 EKIAQFMSITGA-DEDVAIQYLEANNWDLEAAVNAYFDDGE   41 (43)
T ss_dssp             HHHHHHHHHH-S-SHHHHHHHHHHTTT-HHHHHHHHHHSS-
T ss_pred             HHHHHHHHHHCc-CHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            367889999999 7899999999999999999999887554

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.00018  Score=63.31  Aligned_cols=63  Identities=21%  Similarity=0.202  Sum_probs=51.8

Q ss_pred             CCCCCccCCHHHHHHHH---hhcCCcEEEEecCCCcEEEcc-cCCCCCceEEEEeecCccccccccC
Q 031691            1 METDGTWAGHMELQAAS---LVTHSNICIHRHMSPRWYIRN-FDYHEARMIHLSYHDGEHYNGVRLK   63 (155)
Q Consensus         1 M~~~gtWGG~~EL~A~s---~~~~~~I~I~q~~~p~~~i~~-~~~~~~~~i~LsYh~geHYnSvr~~   63 (155)
                      |++++.||.|+|+||+|   .....++.|++...+.|.-.+ ...+...++++.|+...||+++|.-
T Consensus       278 kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~n~~~~~h~~~~~~~  344 (371)
T KOG2605|consen  278 KRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIEESVKMEKYNFWVEVHYNTARHS  344 (371)
T ss_pred             cccCCCCcchHHHhhhhhhhhhccccceeecccccceeccCcccccchhhhhhcccchhhhhhcccc
Confidence            78999999999999999   677888899998888776544 2234556688889899999999985

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.00033  Score=59.07  Aligned_cols=73  Identities=22%  Similarity=0.238  Sum_probs=49.6

Q ss_pred             CCCCccCCHHHHHHHHhhcCCcEEEEecCCCcEEEcccCCCCCceEEEEeecCccccccccCC-CCCCCCCccee
Q 031691            2 ETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKE-DSCIGSARPII   75 (155)
Q Consensus         2 ~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~~~i~~~~~~~~~~i~LsYh~geHYnSvr~~~-~~~~gp~~p~~   75 (155)
                      +|.-.|||-+||.-+|..|+|-|+|+-....++.-.+.+.....-+.|-| +|-||+++.... .+..-|....+
T Consensus       173 ~k~dsWGGaIElsILS~~ygveI~vvDiqt~rid~fged~~~~~rv~lly-dGIHYD~l~m~~~~~~~~~~tifp  246 (307)
T KOG3288|consen  173 LKMDSWGGAIELSILSDYYGVEICVVDIQTVRIDRFGEDKNFDNRVLLLY-DGIHYDPLAMNEFKPTDVDNTIFP  246 (307)
T ss_pred             ccccccCceEEeeeehhhhceeEEEEecceeeehhcCCCCCCCceEEEEe-cccccChhhhccCCccCCcccccc
Confidence            57789999999999999999999998876543332222221233455555 599999998765 44444554444

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=97.05  E-value=0.0014  Score=40.20  Aligned_cols=38  Identities=21%  Similarity=0.221  Sum_probs=32.2

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE  144 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~  144 (155)
                      .++.++.-.+-.+...|+.+|++++||+|.||..||..
T Consensus         5 ~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~   42 (43)
T smart00546        5 ALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG   42 (43)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            45566666666799999999999999999999999964

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

>TIGR00264 alpha-NAC-related protein

Probab=96.99  E-value=0.0012  Score=49.55  Aligned_cols=39  Identities=33%  Similarity=0.451  Sum_probs=34.5

Q ss_pred             CChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691          103 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI  142 (155)
Q Consensus       103 ~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll  142 (155)
                      ++++.|..||+.+|| +.+..+++|++|+||+-.||.+|-
T Consensus        77 i~~eDI~lV~eq~gv-s~e~A~~AL~~~~gDl~~AI~~L~  115 (116)
T TIGR00264        77 ITEDDIELVMKQCNV-SKEEARRALEECGGDLAEAIMKLE  115 (116)
T ss_pred             CCHHHHHHHHHHhCc-CHHHHHHHHHHcCCCHHHHHHHhh
Confidence            456678999999999 589999999999999999999873

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.

>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed

Probab=96.90  E-value=0.0016  Score=48.83  Aligned_cols=40  Identities=30%  Similarity=0.380  Sum_probs=35.4

Q ss_pred             cCChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691          102 IINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI  142 (155)
Q Consensus       102 ~~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll  142 (155)
                      .++++.|..||+.+|| +.+..+++|++|+||+-.||.+|-
T Consensus        74 ~i~~edI~lv~~q~gv-s~~~A~~AL~~~~gDl~~AI~~L~  113 (115)
T PRK06369         74 EIPEEDIELVAEQTGV-SEEEARKALEEANGDLAEAILKLS  113 (115)
T ss_pred             CCCHHHHHHHHHHHCc-CHHHHHHHHHHcCCcHHHHHHHHh
Confidence            3556788999999999 589999999999999999999885

>cd00194 UBA Ubiquitin Associated domain

Probab=96.86  E-value=0.0034  Score=37.09  Aligned_cols=34  Identities=21%  Similarity=0.468  Sum_probs=27.9

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI  142 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll  142 (155)
                      .++.++ ..|. +.+.++++|+.++||++.|+++|+
T Consensus         4 ~v~~L~-~mGf-~~~~~~~AL~~~~~d~~~A~~~L~   37 (38)
T cd00194           4 KLEQLL-EMGF-SREEARKALRATNNNVERAVEWLL   37 (38)
T ss_pred             HHHHHH-HcCC-CHHHHHHHHHHhCCCHHHHHHHHh
Confidence            344444 3575 599999999999999999999987

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>smart00165 UBA Ubiquitin associated domain

Probab=96.49  E-value=0.006  Score=35.85  Aligned_cols=33  Identities=27%  Similarity=0.462  Sum_probs=26.7

Q ss_pred             HHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691          108 IKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI  142 (155)
Q Consensus       108 v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll  142 (155)
                      ++.++ ..| .+.+.++++|+.++||++.|+++|+
T Consensus         5 v~~L~-~mG-f~~~~a~~aL~~~~~d~~~A~~~L~   37 (37)
T smart00165        5 IDQLL-EMG-FSREEALKALRAANGNVERAAEYLL   37 (37)
T ss_pred             HHHHH-HcC-CCHHHHHHHHHHhCCCHHHHHHHHC
Confidence            44444 346 6788999999999999999999985

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.91  E-value=0.016  Score=47.43  Aligned_cols=55  Identities=20%  Similarity=0.223  Sum_probs=36.5

Q ss_pred             ccCCHHHHHHHHhhcCCcEEEEecCCC----cEEEccc---CCCCCceEEEEeecCccccccc
Q 031691            6 TWAGHMELQAASLVTHSNICIHRHMSP----RWYIRNF---DYHEARMIHLSYHDGEHYNGVR   61 (155)
Q Consensus         6 tWGG~~EL~A~s~~~~~~I~I~q~~~p----~~~i~~~---~~~~~~~i~LsYh~geHYnSvr   61 (155)
                      .=++|+.|.|||++++++|.|+-.+..    ......+   +....+.|+|-|--| |||-+.
T Consensus       182 ~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~~~~~~~~~~i~LLyrpg-HYdIly  243 (244)
T PF10275_consen  182 KEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFPPDNESQEPQITLLYRPG-HYDILY  243 (244)
T ss_dssp             --B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES-SSTTSS-SEEEEEETB-EEEEEE
T ss_pred             ccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCCCccCCCCCEEEEEEcCC-cccccc
Confidence            346999999999999999999988754    1111112   234678999999988 999654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function

Probab=95.79  E-value=0.021  Score=38.11  Aligned_cols=39  Identities=18%  Similarity=0.400  Sum_probs=34.0

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ  145 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~  145 (155)
                      .|+.+-..+||+.-+-|..+|.+|+.|.+.|+..||..+
T Consensus         8 ~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~qD   46 (60)
T PF06972_consen    8 TVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQD   46 (60)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence            456677778998889999999999999999999999753

>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]

Probab=95.62  E-value=0.027  Score=42.60  Aligned_cols=41  Identities=37%  Similarity=0.472  Sum_probs=36.4

Q ss_pred             CcCChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691          101 GIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI  142 (155)
Q Consensus       101 ~~~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll  142 (155)
                      ..++++.++.||+-+|. +.+.++++|++++||+-.||-.|.
T Consensus        81 ~~i~eeDIkLV~eQa~V-sreeA~kAL~e~~GDlaeAIm~L~  121 (122)
T COG1308          81 SDISEEDIKLVMEQAGV-SREEAIKALEEAGGDLAEAIMKLT  121 (122)
T ss_pred             CCCCHHHHHHHHHHhCC-CHHHHHHHHHHcCCcHHHHHHHhc
Confidence            45677889999999997 699999999999999999998874

>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []

Probab=94.34  E-value=0.053  Score=33.30  Aligned_cols=27  Identities=30%  Similarity=0.393  Sum_probs=23.2

Q ss_pred             CcCCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691          116 GCENSEKVEEVLLQVGGDVDAAIEFLI  142 (155)
Q Consensus       116 Gc~d~~~I~~~L~~~~gdid~Ai~~Ll  142 (155)
                      .-.....+.-+|+.|+||+-.|||.+|
T Consensus        13 P~~kr~~Le~iL~~C~GDvv~AIE~~l   39 (39)
T PF03474_consen   13 PHQKRSVLELILQRCNGDVVQAIEQFL   39 (39)
T ss_pred             CCCChHHHHHHHHHcCCcHHHHHHHhC
Confidence            445778888999999999999999875

DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.

>TIGR00116 tsf translation elongation factor Ts

Probab=91.63  E-value=0.29  Score=41.95  Aligned_cols=39  Identities=23%  Similarity=0.304  Sum_probs=34.4

Q ss_pred             hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691          105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE  144 (155)
Q Consensus       105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~  144 (155)
                      ...|++....||. -....+++|.+++||+|.||++|...
T Consensus         5 a~~IK~LRe~Tga-gm~dCKkAL~e~~gDiekAi~~LRkk   43 (290)
T TIGR00116         5 AQLVKELRERTGA-GMMDCKKALTEANGDFEKAIKNLRES   43 (290)
T ss_pred             HHHHHHHHHHHCC-CHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence            4568889999997 58889999999999999999999764

This protein is found in Bacteria, mitochondria, and chloroplasts.

>PRK12332 tsf elongation factor Ts; Reviewed

Probab=91.61  E-value=0.33  Score=39.40  Aligned_cols=39  Identities=26%  Similarity=0.389  Sum_probs=34.3

Q ss_pred             hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691          105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE  144 (155)
Q Consensus       105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~  144 (155)
                      ...|++....||. -....+++|.+++||+|.||++|...
T Consensus         5 a~~ik~LR~~tga-~~~~ck~AL~~~~gd~~~A~~~lr~~   43 (198)
T PRK12332          5 AKLVKELREKTGA-GMMDCKKALEEANGDMEKAIEWLREK   43 (198)
T ss_pred             HHHHHHHHHHHCC-CHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence            4578889999995 68999999999999999999999764

>PRK09377 tsf elongation factor Ts; Provisional

Probab=91.42  E-value=0.32  Score=41.68  Aligned_cols=40  Identities=25%  Similarity=0.416  Sum_probs=34.8

Q ss_pred             ChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691          104 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE  144 (155)
Q Consensus       104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~  144 (155)
                      ....|++....||. -..-.+++|++++||+|.|+++|...
T Consensus         5 s~~~IK~LR~~Tga-gm~dCKkAL~e~~gD~ekAi~~Lrk~   44 (290)
T PRK09377          5 TAALVKELRERTGA-GMMDCKKALTEADGDIEKAIEWLRKK   44 (290)
T ss_pred             CHHHHHHHHHHHCC-CHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence            34578899999996 58999999999999999999999864

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=87.96  E-value=0.85  Score=40.42  Aligned_cols=37  Identities=30%  Similarity=0.421  Sum_probs=32.0

Q ss_pred             hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      +..|+.||+= | ++++.|+.+|++.-+|.|.||||||.
T Consensus       157 e~~I~~i~eM-G-f~R~qV~~ALRAafNNPdRAVEYL~t  193 (378)
T TIGR00601       157 ETTIEEIMEM-G-YEREEVERALRAAFNNPDRAVEYLLT  193 (378)
T ss_pred             HHHHHHHHHh-C-CCHHHHHHHHHHHhCCHHHHHHHHHh
Confidence            4567777753 5 79999999999999999999999985

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.55  E-value=0.87  Score=38.16  Aligned_cols=54  Identities=20%  Similarity=0.185  Sum_probs=40.1

Q ss_pred             CCHHHHHHHHhhcCCcEEEEecCCCcE-EE--cccCCCCCceEEEEeecCcccccccc
Q 031691            8 AGHMELQAASLVTHSNICIHRHMSPRW-YI--RNFDYHEARMIHLSYHDGEHYNGVRL   62 (155)
Q Consensus         8 GG~~EL~A~s~~~~~~I~I~q~~~p~~-~i--~~~~~~~~~~i~LsYh~geHYnSvr~   62 (155)
                      .||++|-|||+++++.|.|--++...- ..  ..++..+.+.|.|-|.- -||+-+.+
T Consensus       199 sdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fpe~s~P~I~LLYrp-GHYdilY~  255 (256)
T KOG3991|consen  199 SDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFPEASAPEIYLLYRP-GHYDILYK  255 (256)
T ss_pred             cCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCccccCceEEEEecC-CccccccC
Confidence            689999999999999999966643211 12  22555678899999986 49987654

>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]

Probab=86.75  E-value=1.1  Score=38.51  Aligned_cols=38  Identities=26%  Similarity=0.415  Sum_probs=33.3

Q ss_pred             hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      ...|++....||- -.....++|.+++||+|.||++|..
T Consensus         6 a~~VKeLRe~TgA-GMmdCKkAL~E~~Gd~EkAie~LR~   43 (296)
T COG0264           6 AALVKELREKTGA-GMMDCKKALEEANGDIEKAIEWLRE   43 (296)
T ss_pred             HHHHHHHHHHhCC-cHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            4568888889985 5888999999999999999999976

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=82.57  E-value=0.71  Score=40.92  Aligned_cols=141  Identities=12%  Similarity=-0.016  Sum_probs=78.7

Q ss_pred             CCCCCccCCHHHHHHHHhhcCCcEEEEecCCCcEEEcccCCC-CCceEEEEeecCccccccccCCCCCCCCCcceeeccc
Q 031691            1 METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYH-EARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKAD   79 (155)
Q Consensus         1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~~~i~~~~~~-~~~~i~LsYh~geHYnSvr~~~~~~~gp~~p~~~~~d   79 (155)
                      |...++|-|+..++|++.-....+..+-...|.|.+.+..+. ...+.+.+||.+ |++....-..-...++.+.+....
T Consensus       115 ~~~~~~~~g~~~~~a~s~~~~~~~~~~~~~~~~~~~~~~sd~~~~~~~~~~~~~~-~~~~~~~g~~in~y~~~~~~~~~~  193 (371)
T KOG2605|consen  115 MCSFHSRRGNESFQAASFGGLEIDLEVERNSPEWLGQSPSDPLRSVPSMEAIHAR-HPEAKEVGVRINDYNPKVLVPFIN  193 (371)
T ss_pred             CCcccccccccccccccccccccchhhhccCchhccccccccccccccccchhhc-cccchhhcccccCCCccccccccc
Confidence            556789999999999999999999999999999999875443 356889999975 555444333333333332222222


Q ss_pred             cchhhhhhhhhhhhhhccCCCCcCChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691           80 ADISAASIQSKTVTSKLKGAAGIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG  146 (155)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~  146 (155)
                      ..+.+...+.+--....+.. ..+.... ++|-.-.-|....+.-|+..  +.+....+..+...+.
T Consensus       194 ~~~~~~~~~~s~~~~~~~~~-~~~g~e~-~Kv~edGsC~fra~aDQvy~--d~e~~~~~~~~~~dq~  256 (371)
T KOG2605|consen  194 GLPPSEEEPQSAHERSAKRK-KHFGFEY-KKVVEDGSCLFRALADQVYG--DDEQHDHNRRECVDQL  256 (371)
T ss_pred             cCCCchHHHHHHHHHHHHHH-HHhhhhh-hhcccCCchhhhccHHHhhc--CHHHHHHHHHHHHHHH
Confidence            22211111110000000000 1111112 23332234544555555555  7788888888877664

>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]

Probab=81.88  E-value=2.4  Score=25.53  Aligned_cols=23  Identities=26%  Similarity=0.515  Sum_probs=18.7

Q ss_pred             CHHHHHHHHHHhCCCHHHHHHHH
Q 031691          119 NSEKVEEVLLQVGGDVDAAIEFL  141 (155)
Q Consensus       119 d~~~I~~~L~~~~gdid~Ai~~L  141 (155)
                      ..+.|+++|+.++||+-.|-..|
T Consensus         6 E~~~i~~aL~~~~gn~~~aA~~L   28 (42)
T PF02954_consen    6 EKQLIRQALERCGGNVSKAARLL   28 (42)
T ss_dssp             HHHHHHHHHHHTTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHH
Confidence            36789999999999999887665

It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....

>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]

Probab=81.81  E-value=2.4  Score=37.10  Aligned_cols=43  Identities=23%  Similarity=0.315  Sum_probs=36.5

Q ss_pred             hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691          105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE  148 (155)
Q Consensus       105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~  148 (155)
                      ...+++....|| +.+..++++|++|+||++.|.++|-..-+.+
T Consensus        47 ~allk~LR~kTg-as~~ncKkALee~~gDl~~A~~~L~k~aqk~   89 (340)
T KOG1071|consen   47 KALLKKLREKTG-ASMVNCKKALEECGGDLVLAEEWLHKKAQKE   89 (340)
T ss_pred             HHHHHHHHHHcC-CcHHHHHHHHHHhCCcHHHHHHHHHHHHHHh
Confidence            456788888999 5799999999999999999999997665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	2e-16
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	1e-15
3pfy_A	185	OTU domain-containing protein 5; structural genomi	2e-14
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	1e-08
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	7e-04

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 71.2 bits (174), Expect = 2e-16
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 1   METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHE---ARMIHLSYHDGEHY 57
           M +D  W   +E    +      I I    +         + +      ++L +    H+
Sbjct: 95  MLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHF 154

Query: 58  NGVRLKED 65
           + +R+   
Sbjct: 155 DALRILPQ 162

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 70.2 bits (171), Expect = 1e-15
 Identities = 10/94 (10%), Positives = 27/94 (28%), Gaps = 3/94 (3%)

Query: 1   METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHE---ARMIHLSYHDGEHY 57
           M +D  W   +E    +      I I    +         + +      ++L +    H+
Sbjct: 95  MLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHF 154

Query: 58  NGVRLKEDSCIGSARPIIIKADADISAASIQSKT 91
           + +R+       +   + +            S +
Sbjct: 155 DALRILPQFETDTREALSLMDRVIAVDQLTSSSS 188

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score = 66.3 bits (161), Expect = 2e-14
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 1   METDGTWAGHMELQAASLVTHSNICIHRHMSPRW-YIRNFDYHEARMIHLSYHDGEHYNG 59
              +     H+E+QA + + +  + ++++ +           +E   I +SYH   HYN 
Sbjct: 119 KRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNS 178

Query: 60  VRLKEDS 66
           V     +
Sbjct: 179 VVNPNKA 185

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 50.7 bits (121), Expect = 1e-08
 Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 1   METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGV 60
           +    +W G +E+   S      I +    + +    N D  +  ++     +G HY+ +
Sbjct: 80  ILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKFNEDKFDNYILI--LFNGIHYDSL 137

Query: 61  RLKEDSCIGSARPI 74
            + E   + +    
Sbjct: 138 TMNEFKTVFNKNQP 151

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234

 Score = 37.4 bits (86), Expect = 7e-04
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 8/63 (12%)

Query: 1   METDGTWAGHMELQAASLVTHSNICIH-----RHMSPRWYIRNFDYHEARMIHLSYHDGE 55
           +E     + H+ + A  L    ++ I      R          F       ++L Y  G 
Sbjct: 171 VEPMCKESDHIHIIA--LAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPG- 227

Query: 56  HYN 58
           HY+
Sbjct: 228 HYD 230

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.77
3pfy_A	185	OTU domain-containing protein 5; structural genomi	99.76
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.75
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.7
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.4
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.37
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	98.64
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	98.55
1wgl_A	59	TOLL-interacting protein; CUE domain, structural g	97.68
2dhy_A	67	CUE domain-containing protein 1; structural genomi	97.64
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	97.48
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	97.26
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	97.23
1otr_A	49	Protein CUE2; protein-protein complex, cell cycle;	97.21
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	97.11
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	97.07
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	97.01
1p3q_Q	54	VPS9P, vacuolar protein sorting-associated protein	96.99
2dna_A	67	Unnamed protein product; ubiquitin associated doma	96.9
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	96.86
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	96.84
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	96.81
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	96.78
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	96.77
2cp8_A	54	NEXT to BRCA1 gene 1 protein; UBA domain, structur	96.77
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	96.75
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	96.56
1tr8_A	102	Conserved protein (MTH177); chaperones, nascent po	96.56
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	96.55
3e21_A	45	HFAF1, FAS-associated factor 1; UBA, alternative s	96.32
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	96.22
2dam_A	67	ETEA protein; KIAA0887, UBA-like domain, structura	96.2
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	95.88
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	95.74
1v92_A	46	NSFL1 cofactor P47; 3-helix bundle, recombination;	95.45
2dal_A	62	Protein KIAA0794; FAS associted factor 1, UBA-like	95.43
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	95.37
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	95.17
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	94.89
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	94.83
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	94.73
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	94.72
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	94.67
1vdl_A	80	Ubiquitin carboxyl-terminal hydrolase 25; UBA doma	94.64
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	94.58
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	93.9
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	93.8
2dzl_A	66	Protein FAM100B; UBA-like domain, structural genom	93.27
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	93.12
2lva_A	129	Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubi	92.17
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	91.7
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	91.67
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	91.55
1aip_C	196	EF-TS, elongation factor TS; nucleotide exchange,	91.01
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	90.63
1xb2_B	291	EF-TS, elongation factor TS, mitochondrial, EF-TSM	90.14
2di0_A	71	Activating signal cointegrator 1 complex subunit 2	89.55
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	87.05
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	86.85
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	86.45
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	84.73
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	83.33
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	80.92

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.77  E-value=3e-19  Score=144.75  Aligned_cols=76  Identities=14%  Similarity=0.162  Sum_probs=63.9

Q ss_pred             CCCCCccCCHHHHHHHHhhcCCcEEEEecCCC--cEEEccc-CCCCCceEEEEeecCccccccccCCCCCCCCCcceee
Q 031691            1 METDGTWAGHMELQAASLVTHSNICIHRHMSP--RWYIRNF-DYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIII   76 (155)
Q Consensus         1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p--~~~i~~~-~~~~~~~i~LsYh~geHYnSvr~~~~~~~gp~~p~~~   76 (155)
                      |+++|+|||++||+|+|++|+++|+||+.+.+  .+.+..+ +....++|+|+||.|+|||||+++.+.+.+|+.|..|
T Consensus        95 m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~~~~~I~L~Y~g~~HYdSL~~~~d~~~~~~~~~~l  173 (219)
T 3phu_A           95 MLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQFETDTREALSL  173 (219)
T ss_dssp             HHSTTCCCCHHHHHHHHHHTTCCEEEEEESSSSBEEEEEEESSCCTTTSEEEEEETTTEEEEEEECTTTCCSCCCCCCH
T ss_pred             hcCCCccCCHHHHHHHHHHhCCCEEEEEecCCCCceeEEEecCCCCCCeEEEEECCCcCchhheECCCCCCCCCcchhH
Confidence            78999999999999999999999999998876  3333222 2234789999999999999999999999999887665

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=99.76  E-value=4.2e-19  Score=140.55  Aligned_cols=64  Identities=20%  Similarity=0.281  Sum_probs=47.5

Q ss_pred             CCCCCccCCHHHHHHHHhhcCCcEEEEecCCCcEEE-cccCCCCCceEEEEeecCccccccccCC
Q 031691            1 METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYI-RNFDYHEARMIHLSYHDGEHYNGVRLKE   64 (155)
Q Consensus         1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~~~i-~~~~~~~~~~i~LsYh~geHYnSvr~~~   64 (155)
                      |+++|+|||++||+|||++|+++|+||+.+.+.+.| ........++|+|+||+++|||||+...
T Consensus       119 m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p~  183 (185)
T 3pfy_A          119 KRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPN  183 (185)
T ss_dssp             -------CCHHHHHHHHHHHTSCEEEESSCSSCSEEECTTSCCTTSCEEEEEETTTEEEEEECC-
T ss_pred             hhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEecCccCCCCCEEEEEECCCCCcccccCCC
Confidence            889999999999999999999999999998755544 3333345789999999999999998754

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.75  E-value=4.9e-19  Score=139.96  Aligned_cols=76  Identities=14%  Similarity=0.170  Sum_probs=54.7

Q ss_pred             CCCCCccCCHHHHHHHHhhcCCcEEEEecCCCc--EEEccc-CCCCCceEEEEeecCccccccccCCCCCCCCCcceee
Q 031691            1 METDGTWAGHMELQAASLVTHSNICIHRHMSPR--WYIRNF-DYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIII   76 (155)
Q Consensus         1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~--~~i~~~-~~~~~~~i~LsYh~geHYnSvr~~~~~~~gp~~p~~~   76 (155)
                      |+++|+|||++||+|+|++|+++|+||+.+.+.  +.+..+ +....++|+|+||.|+|||||+.+.+.+..+..|+.|
T Consensus        95 m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~~~~~I~L~Y~g~~HYdsl~~~~~~~~~~~~~~~~  173 (185)
T 3phx_A           95 MLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQFETDTREALSL  173 (185)
T ss_dssp             HTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CCBCCEEEEESSCCTTTSEEEEEETTTEEEEEEECGGGC---------
T ss_pred             hhCCCccCcHHHHHHHHHHHCCcEEEEEecCCCCceEEEEcCCCCCCCEEEEEECCCcCchhceECCCCCCCCcccccH
Confidence            789999999999999999999999999987654  222222 2234789999999889999999999888776666554

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.70  E-value=1.6e-17  Score=133.58  Aligned_cols=59  Identities=17%  Similarity=0.241  Sum_probs=51.2

Q ss_pred             CCCCCccCCHHHHHHHHhhcCCcEEEEecC-CCcEEEcccCCCCCceEEEEeecCcccccccc
Q 031691            1 METDGTWAGHMELQAASLVTHSNICIHRHM-SPRWYIRNFDYHEARMIHLSYHDGEHYNGVRL   62 (155)
Q Consensus         1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~-~p~~~i~~~~~~~~~~i~LsYh~geHYnSvr~   62 (155)
                      |+++|+||||+||+|||++|+++|+||+.. .|.+.+.. +. ..++|+|+|| |+|||||+.
T Consensus        80 m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~~~~~~~~-~~-~~~~I~L~Y~-g~HYdsl~~  139 (212)
T 3by4_A           80 ILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKFNE-DK-FDNYILILFN-GIHYDSLTM  139 (212)
T ss_dssp             TTSTTSCCCHHHHHHHHHHHTCEEEEEETTTTEEEEEST-TT-CSEEEEEEEC-SSCEEEEEE
T ss_pred             hcCCCEEccHHHHHHHHHHHCCCEEEEECCCCCeEEeCC-CC-CCCeEEEEEc-CCcceEEec
Confidence            899999999999999999999999999986 45555543 22 5789999999 899999998

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.40  E-value=2.7e-13  Score=110.36  Aligned_cols=63  Identities=17%  Similarity=0.160  Sum_probs=49.4

Q ss_pred             CCCCCccCCHHHHHHHHhhcCCcEEEEecCCCcEEE--cccCCCCCceEEEEeecCccccccccCC
Q 031691            1 METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYI--RNFDYHEARMIHLSYHDGEHYNGVRLKE   64 (155)
Q Consensus         1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~~~i--~~~~~~~~~~i~LsYh~geHYnSvr~~~   64 (155)
                      |+..++||||+||+|||++++++|.|++++.+...+  ..++....+.|||.|+.| |||++++..
T Consensus       168 ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~~~~~~I~LlY~pg-HYdily~~~  232 (234)
T 1tff_A          168 VEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTS-HYNILYAAD  232 (234)
T ss_dssp             TSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSSCSEEEEEETT-EEEEEEECC
T ss_pred             hhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCCCCCCeEEEEECCC-CceecccCC
Confidence            467899999999999999999999999998765323  235555678999999966 999999864

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.37  E-value=5.8e-13  Score=108.24  Aligned_cols=61  Identities=16%  Similarity=0.116  Sum_probs=49.5

Q ss_pred             CCCCCccCCHHHHHHHHhhcCCcEEEEecCCCc---EEEcccCCCCCceEEEEeecCcccccccc
Q 031691            1 METDGTWAGHMELQAASLVTHSNICIHRHMSPR---WYIRNFDYHEARMIHLSYHDGEHYNGVRL   62 (155)
Q Consensus         1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~---~~i~~~~~~~~~~i~LsYh~geHYnSvr~   62 (155)
                      ++..++||||+||+|||++++++|.|++++.+.   +....++....+.|+|.||.| |||++.+
T Consensus       171 ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~~~p~I~LlY~pg-HYdiLy~  234 (234)
T 2zfy_A          171 VEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPG-HYDILYK  234 (234)
T ss_dssp             TSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEESTTCCCSEEEEEETT-EEEEEEC
T ss_pred             hhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCCCCCCeEEEEECCC-CcccCCC
Confidence            456899999999999999999999999997653   443445545678899999976 9999864

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=98.64  E-value=4.8e-08  Score=81.70  Aligned_cols=63  Identities=22%  Similarity=0.220  Sum_probs=47.4

Q ss_pred             CCCCCccCCHHHHHHHHhhcCCcEEEEecCCC------cEE-EcccCCCCCceEEEEeecCccccccccCC
Q 031691            1 METDGTWAGHMELQAASLVTHSNICIHRHMSP------RWY-IRNFDYHEARMIHLSYHDGEHYNGVRLKE   64 (155)
Q Consensus         1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p------~~~-i~~~~~~~~~~i~LsYh~geHYnSvr~~~   64 (155)
                      |+..++||||+||+|||++|+++|.|++++..      ... +........+.|+|-|.- .||+-+.+..
T Consensus       206 Ve~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp~~~~~~~p~I~LLYrp-gHYDILY~~~  275 (284)
T 4dhi_B          206 IEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPSDDQQIAPEITLLYRP-GHYDVIYKKD  275 (284)
T ss_dssp             TSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEESCCCSCCCCSEEEEEET-TEEEEEEECC
T ss_pred             ceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCCCCCCCCCCEEEEeecC-CCccccccCC
Confidence            46789999999999999999999999998642      122 211111234789999997 4999998763

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=98.55  E-value=5e-08  Score=84.39  Aligned_cols=61  Identities=16%  Similarity=0.108  Sum_probs=47.1

Q ss_pred             CCCCCccCCHHHHHHHHhhcCCcEEEEecCCC-c--EEEcccCCCCCceEEEEeecCcccccccc
Q 031691            1 METDGTWAGHMELQAASLVTHSNICIHRHMSP-R--WYIRNFDYHEARMIHLSYHDGEHYNGVRL   62 (155)
Q Consensus         1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p-~--~~i~~~~~~~~~~i~LsYh~geHYnSvr~   62 (155)
                      |...++||||+||+|||++|+++|.|+.++.. .  +....++....+.|+|.|.-| |||.+.+
T Consensus       336 ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~~~~~~I~LLYrPg-HYDiLY~  399 (399)
T 4ddg_A          336 VEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPG-HYDILYK  399 (399)
T ss_dssp             TSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTTTCCCCCEEEEETB-EEEEEEC
T ss_pred             ceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCCCCCCEEEEEEcCC-ccccCCC
Confidence            46789999999999999999999999987542 1  211223445678999999876 9998753

>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=97.68  E-value=7.7e-05  Score=48.59  Aligned_cols=44  Identities=23%  Similarity=0.194  Sum_probs=37.5

Q ss_pred             hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691          105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE  148 (155)
Q Consensus       105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~  148 (155)
                      ++.++.+..-..--|.+.|+.+|++|+||+|+||..||.+....
T Consensus        10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~   53 (59)
T 1wgl_A           10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP   53 (59)
T ss_dssp             HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCC
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCC
Confidence            44566666667778999999999999999999999999987765

>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.64  E-value=9.4e-05  Score=49.43  Aligned_cols=44  Identities=20%  Similarity=0.125  Sum_probs=37.7

Q ss_pred             hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCCc
Q 031691          106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTEE  149 (155)
Q Consensus       106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~~  149 (155)
                      ..++.+..-..--|.+.|+.+|++|+||+|+||+.||.+.....
T Consensus        20 ~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~~   63 (67)
T 2dhy_A           20 QAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLESG   63 (67)
T ss_dssp             HHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCC
Confidence            35666666678789999999999999999999999999886654

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.48  E-value=0.00013  Score=52.58  Aligned_cols=40  Identities=25%  Similarity=0.385  Sum_probs=35.9

Q ss_pred             hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691          105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ  145 (155)
Q Consensus       105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~  145 (155)
                      ++.|+.||.-||| +.+.++.+|.+|+||++.||++||.-.
T Consensus        40 eekVk~L~EmtG~-seeeAr~AL~~~ngDl~~AI~~Lleg~   79 (104)
T 1wj7_A           40 EEKVKQLIDITGK-NQDECVIALHDCNGDVNRAINVLLEGN   79 (104)
T ss_dssp             HHHHHHHHHHTCC-CHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred             HHHHHHHHHhhCC-CHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence            4578999999998 589999999999999999999999655

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=97.26  E-value=0.00042  Score=45.88  Aligned_cols=44  Identities=18%  Similarity=0.177  Sum_probs=37.6

Q ss_pred             CcCChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691          101 GIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ  145 (155)
Q Consensus       101 ~~~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~  145 (155)
                      ..+....|+.++..||. .....+++|++++||++.||++|....
T Consensus         6 ~~it~~~Vk~LRe~TGa-g~~dcKkAL~e~~GDi~~Ai~~Lr~kg   49 (64)
T 2cp9_A            6 SGSSKELLMKLRRKTGY-SFVNCKKALETCGGDLKQAEIWLHKEA   49 (64)
T ss_dssp             SCCCCHHHHHHHHHHCC-CHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence            34455688999999997 599999999999999999999997653

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=97.23  E-value=0.00037  Score=43.01  Aligned_cols=36  Identities=19%  Similarity=0.349  Sum_probs=30.0

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      .++.++ .-|..|.+.++++|+.++||++.||++|+.
T Consensus        10 ~i~~L~-~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~   45 (46)
T 2bwb_A           10 QLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSLLN   45 (46)
T ss_dssp             HHHHHH-HTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            344444 458889999999999999999999999983

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4

Probab=97.21  E-value=0.00067  Score=42.65  Aligned_cols=40  Identities=23%  Similarity=0.338  Sum_probs=33.1

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG  146 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~  146 (155)
                      .++.++.-..-.+...|+.+|+.++||+|.||..||.+..
T Consensus         7 ~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~   46 (49)
T 1otr_A            7 KLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEND   46 (49)
T ss_dssp             HHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence            4555555555558999999999999999999999999944

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=97.11  E-value=0.00078  Score=42.93  Aligned_cols=39  Identities=36%  Similarity=0.492  Sum_probs=31.9

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG  146 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~  146 (155)
                      .+++.+ .-|..|.+.++++|..++||++.||++|+....
T Consensus        12 ~l~~L~-~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~   50 (54)
T 2dah_A           12 QLEQLR-SMGFLNREANLQALIATGGDVDAAVEKLRQSSG   50 (54)
T ss_dssp             HHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred             HHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            344443 348889999999999999999999999997643

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=97.07  E-value=0.00066  Score=43.96  Aligned_cols=36  Identities=19%  Similarity=0.349  Sum_probs=30.2

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      .+++++ .-|..|.+.++++|+.++||++.||++|+.
T Consensus        20 qi~~L~-~MGF~d~~~~~~AL~~~~gnve~Ave~L~~   55 (58)
T 1wr1_B           20 QLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSLLN   55 (58)
T ss_dssp             HHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            344444 348889999999999999999999999986

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=97.01  E-value=0.00085  Score=39.29  Aligned_cols=36  Identities=25%  Similarity=0.424  Sum_probs=29.7

Q ss_pred             hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691          105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI  142 (155)
Q Consensus       105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll  142 (155)
                      ++.|+.++.- |. +.+.++++|..++||++.|+++|+
T Consensus         5 ~~~i~~L~~m-Gf-~~~~a~~AL~~~~~n~e~A~~~L~   40 (40)
T 1z96_A            5 NSKIAQLVSM-GF-DPLEAAQALDAANGDLDVAASFLL   40 (40)
T ss_dssp             HHHHHHHHHT-TC-CHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred             HHHHHHHHHc-CC-CHHHHHHHHHHcCCCHHHHHHHHC
Confidence            3466777764 65 789999999999999999999984

>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A

Probab=96.99  E-value=0.00021  Score=45.88  Aligned_cols=40  Identities=8%  Similarity=0.156  Sum_probs=26.2

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG  146 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~  146 (155)
                      .++.+..=.+--|.+.|+.+|+.++|++|+||++||++.+
T Consensus        15 ~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqms~   54 (54)
T 1p3q_Q           15 TLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSLSE   54 (54)
T ss_dssp             HHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-------
T ss_pred             HHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhhcC
Confidence            4555555567779999999999999999999999999853

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=96.90  E-value=0.0011  Score=44.27  Aligned_cols=34  Identities=32%  Similarity=0.349  Sum_probs=30.0

Q ss_pred             cCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Q 031691          114 GSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT  147 (155)
Q Consensus       114 ~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~  147 (155)
                      .-|-.|.+.+.++|+.++|||++||++|+.-...
T Consensus        28 ~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~   61 (67)
T 2dna_A           28 AMGFVNYNANLQALIATDGDTNAAIYKLKSSQGF   61 (67)
T ss_dssp             HHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred             HcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence            4588899999999999999999999999986543

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.86  E-value=0.0042  Score=40.63  Aligned_cols=45  Identities=18%  Similarity=0.374  Sum_probs=36.1

Q ss_pred             cCChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691          102 IINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE  148 (155)
Q Consensus       102 ~~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~  148 (155)
                      ..+++.|+.++. -| .+.+.++++|+.++||++.|+++|+.-....
T Consensus         7 ~~~~~~I~~L~~-MG-F~~~~a~~AL~~~~~nve~A~e~L~~~~~~~   51 (63)
T 1wji_A            7 GVDEKALKHITE-MG-FSKEASRQALMDNGNNLEAALNVLLTSNKQK   51 (63)
T ss_dssp             SSCHHHHHHHHT-TT-CCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred             CCCHHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence            355667777763 46 5899999999999999999999999876544

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=96.84  E-value=0.0016  Score=41.09  Aligned_cols=36  Identities=33%  Similarity=0.503  Sum_probs=30.3

Q ss_pred             HHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691          108 IKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE  144 (155)
Q Consensus       108 v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~  144 (155)
                      +++++ .-|..|.+.++++|..++||++.||++|+.-
T Consensus        15 l~~L~-~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~   50 (53)
T 2knz_A           15 LEQLN-SMGFINREANLQALIATGGDINAAIERLLGS   50 (53)
T ss_dssp             HHHHH-TTTCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred             HHHHH-HcCCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence            44444 4587799999999999999999999999863

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=96.81  E-value=0.0025  Score=43.03  Aligned_cols=39  Identities=26%  Similarity=0.414  Sum_probs=32.8

Q ss_pred             ChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691          104 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE  144 (155)
Q Consensus       104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~  144 (155)
                      .++.|++++. -| ++.+.++++|+.++||++.|+++|+.-
T Consensus        29 ~ee~I~~L~e-MG-F~r~~a~~AL~~~~~nve~Ave~Ll~~   67 (73)
T 1vg5_A           29 SEEQIQKLVA-MG-FDRTQVEVALAAADDDLTVAVEILMSQ   67 (73)
T ss_dssp             CHHHHHHHHT-TT-CCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             cHHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            3556777764 57 689999999999999999999999964

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=96.78  E-value=0.0023  Score=38.32  Aligned_cols=36  Identities=22%  Similarity=0.319  Sum_probs=29.7

Q ss_pred             hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      +.+++.+. -| .+.+.++++|+.++||++.|+++|+.
T Consensus         6 ~~i~~L~~-MG-F~~~~a~~AL~~~~~n~e~A~~~L~~   41 (43)
T 2g3q_A            6 LAVEELSG-MG-FTEEEAHNALEKCNWDLEAATNFLLD   41 (43)
T ss_dssp             HHHHHHHT-TT-SCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHHHHH-cC-CCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence            45666663 46 57899999999999999999999984

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=96.77  E-value=0.0014  Score=44.48  Aligned_cols=37  Identities=27%  Similarity=0.456  Sum_probs=31.0

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE  144 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~  144 (155)
                      .+++++ .-|..|.+.++++|+.++||++.||++|+.-
T Consensus        32 qi~qL~-eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~   68 (74)
T 1vej_A           32 ELEELK-ALGFANRDANLQALVATDGDIHAAIEMLLGA   68 (74)
T ss_dssp             HHHHHH-HHTCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred             HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            445444 3488899999999999999999999999963

>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.77  E-value=0.0015  Score=41.84  Aligned_cols=37  Identities=11%  Similarity=0.082  Sum_probs=32.9

Q ss_pred             hhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691          112 MAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE  148 (155)
Q Consensus       112 ~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~  148 (155)
                      +..-|..|.++-.++|..++||+++||+.||+...+.
T Consensus        16 L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~~   52 (54)
T 2cp8_A           16 LFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGPS   52 (54)
T ss_dssp             HHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSSC
T ss_pred             HHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCCC
Confidence            3456888999999999999999999999999987764

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.75  E-value=0.0011  Score=41.30  Aligned_cols=37  Identities=22%  Similarity=0.320  Sum_probs=30.6

Q ss_pred             hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      ++.+++++ .-| .+.+.++.+|+.++||++.|+++|+.
T Consensus         9 ~~~i~~L~-~MG-F~~~~a~~AL~~~~~n~e~A~e~L~~   45 (49)
T 1ify_A            9 ETMLTEIM-SMG-YERERVVAALRASYNNPHRAVEYLLT   45 (49)
T ss_dssp             HHHHHHHH-HTT-CCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred             HHHHHHHH-HcC-CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            44566555 346 48999999999999999999999986

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=96.56  E-value=0.0021  Score=40.42  Aligned_cols=36  Identities=33%  Similarity=0.510  Sum_probs=30.2

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      .+++++ .-|.+|.+.++++|..++||++.||++|+.
T Consensus        15 ~l~~L~-~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~   50 (52)
T 2jy5_A           15 QLEQLS-AMGFLNREANLQALIATGGDINAAIERLLG   50 (52)
T ss_dssp             HHHHHH-HTTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHH-HcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            444444 458779999999999999999999999974

>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}

Probab=96.56  E-value=0.0019  Score=46.21  Aligned_cols=38  Identities=37%  Similarity=0.544  Sum_probs=33.6

Q ss_pred             CChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHH
Q 031691          103 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFL  141 (155)
Q Consensus       103 ~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~L  141 (155)
                      .+++.|..||..+|| +.+..+++|++|+||+-.||.+|
T Consensus        64 i~~edi~lv~~q~~v-s~~~A~~aL~~~~gDiv~Ai~~L  101 (102)
T 1tr8_A           64 IPEDDIELVMNQTGA-SREDATRALQETGGDLAEAIMRL  101 (102)
T ss_dssp             CCHHHHHHHHHHHCC-CHHHHHHHHHHTTTCHHHHHHHC
T ss_pred             CCHHHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHh
Confidence            456678999999999 58889999999999999999876

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.55  E-value=0.0039  Score=40.50  Aligned_cols=46  Identities=7%  Similarity=0.201  Sum_probs=36.4

Q ss_pred             CcCChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691          101 GIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE  148 (155)
Q Consensus       101 ~~~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~  148 (155)
                      ...++..+++++. -|. +.+.++++|+.++||++.|+++|+.-....
T Consensus         6 ~~~~~~~v~~L~~-MGF-~~~~a~~AL~~t~~nve~A~e~L~~~~~d~   51 (63)
T 2dak_A            6 SGPPEDCVTTIVS-MGF-SRDQALKALRATNNSLERAVDWIFSHIDDL   51 (63)
T ss_dssp             CCCCHHHHHHHHH-HTC-CHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHH-cCC-CHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence            3455667777764 464 799999999999999999999999865433

>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}

Probab=96.32  E-value=0.0043  Score=38.21  Aligned_cols=35  Identities=29%  Similarity=0.139  Sum_probs=31.6

Q ss_pred             hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHH
Q 031691          106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEF  140 (155)
Q Consensus       106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~  140 (155)
                      +.+...++-||+.|....++.|+.++.|++.|+..
T Consensus         7 e~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~   41 (45)
T 3e21_A            7 MILADFQACTGIENIDEAITLLEQNNWDLVAAING   41 (45)
T ss_dssp             HHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence            46788899999999999999999999999999853

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=96.22  E-value=0.0055  Score=44.35  Aligned_cols=31  Identities=32%  Similarity=0.533  Sum_probs=28.4

Q ss_pred             cCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691          114 GSGCENSEKVEEVLLQVGGDVDAAIEFLIAE  144 (155)
Q Consensus       114 ~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~  144 (155)
                      .-|-.|.+.++++|+.++||++.||++|+.-
T Consensus        75 eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~  105 (108)
T 2cwb_A           75 DMGIQDDELSLRALQATGGDIQAALELIFAG  105 (108)
T ss_dssp             TTTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred             HcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence            5688899999999999999999999999964

>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.20  E-value=0.007  Score=39.97  Aligned_cols=42  Identities=19%  Similarity=0.192  Sum_probs=37.6

Q ss_pred             hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Q 031691          106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT  147 (155)
Q Consensus       106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~  147 (155)
                      +.++..|.-|||.|....++.|+.+++|++.||...++.+..
T Consensus        20 e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~~   61 (67)
T 2dam_A           20 EKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEG   61 (67)
T ss_dssp             HHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSCS
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence            468899999998899999999999999999999998886554

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=95.88  E-value=0.017  Score=38.73  Aligned_cols=40  Identities=18%  Similarity=0.425  Sum_probs=32.2

Q ss_pred             ChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691          104 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ  145 (155)
Q Consensus       104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~  145 (155)
                      ++..|++++. -| .+...++++|+.++||++.|+++|+.-.
T Consensus        29 ~~~~v~~L~~-MG-F~~~~a~~AL~~t~~nve~Ave~L~~~~   68 (73)
T 1wiv_A           29 DQSSVDTLLS-FG-FAEDVARKALKASGGDIEKATDWVFNNS   68 (73)
T ss_dssp             CHHHHHHHHH-HT-CCHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred             CHHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence            4556666653 36 4899999999999999999999999743

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=95.74  E-value=0.039  Score=35.93  Aligned_cols=44  Identities=14%  Similarity=0.308  Sum_probs=34.7

Q ss_pred             CChhhHHHHhhcCCcCCHHHHHHHHHHh-CCCHHHHHHHHHHHhCCC
Q 031691          103 INAGSIKLVMAGSGCENSEKVEEVLLQV-GGDVDAAIEFLIAEQGTE  148 (155)
Q Consensus       103 ~d~~~v~~v~~~tGc~d~~~I~~~L~~~-~gdid~Ai~~Ll~~~~~~  148 (155)
                      .++..+++++. -| .+...++++|..+ ++|++.|+++|+.-....
T Consensus         8 ~~~~~v~~L~~-MG-F~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~   52 (64)
T 1whc_A            8 AELTALESLIE-MG-FPRGRAEKALALTGNQGIEAAMDWLMEHEDDP   52 (64)
T ss_dssp             CCCCHHHHHHT-TT-CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred             CCHHHHHHHHH-cC-CCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCc
Confidence            34557777774 46 4789999999999 799999999999865443

>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3

Probab=95.45  E-value=0.022  Score=34.14  Aligned_cols=37  Identities=16%  Similarity=0.280  Sum_probs=32.7

Q ss_pred             hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      +.++..+.-||| +....++.|+.+++|++.||....+
T Consensus         7 ~~i~~F~~iTg~-~~~~A~~~L~~~~wdle~Ai~~ff~   43 (46)
T 1v92_A            7 DALREFVAVTGA-EEDRARFFLESAGWDLQIALASFYE   43 (46)
T ss_dssp             HHHHHHHHHTCC-CHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred             HHHHHHHHHhCc-CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            467888999999 7999999999999999999987664

>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.43  E-value=0.027  Score=36.40  Aligned_cols=42  Identities=14%  Similarity=0.289  Sum_probs=36.0

Q ss_pred             hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691          106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE  148 (155)
Q Consensus       106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~  148 (155)
                      +.++..|.-|||. ....++.|+.+++|++.||...++.....
T Consensus        17 e~i~qF~~iTg~~-~~~A~~~Le~~~WnLe~Av~~ff~~~~~~   58 (62)
T 2dal_A           17 GLIQQFTTITGAS-ESVGKHMLEACNNNLEMAVTMFLDGGGSG   58 (62)
T ss_dssp             HHHHHHHHHTCCC-HHHHHHHHHTTTSCHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHHcCCCCC
Confidence            4678999999995 88999999999999999999888765443

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.37  E-value=0.039  Score=37.00  Aligned_cols=44  Identities=11%  Similarity=0.284  Sum_probs=35.0

Q ss_pred             CChhhHHHHhhcCCcCCHHHHHHHHHHhCC-CHHHHHHHHHHHhCCC
Q 031691          103 INAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQGTE  148 (155)
Q Consensus       103 ~d~~~v~~v~~~tGc~d~~~I~~~L~~~~g-did~Ai~~Ll~~~~~~  148 (155)
                      .++..+++++. -| .+.+.++++|..++| |++.|+++|+.-....
T Consensus         8 ~~e~~v~~L~~-MG-F~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~   52 (74)
T 2dag_A            8 LDESVIIQLVE-MG-FPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP   52 (74)
T ss_dssp             SCHHHHHHHHH-HS-CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred             CCHHHHHHHHH-cC-CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence            45667777664 46 479999999999997 8999999999865543

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=95.17  E-value=0.011  Score=36.32  Aligned_cols=39  Identities=15%  Similarity=0.220  Sum_probs=30.9

Q ss_pred             ChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691          104 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE  144 (155)
Q Consensus       104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~  144 (155)
                      +.++|+.++ .-| .+..+++++|.+|++|.+.|..+|+.-
T Consensus         4 e~eaI~rL~-~mG-F~~~~a~~Al~a~~~n~e~A~~~Lf~~   42 (47)
T 1dv0_A            4 EKEAIERLK-ALG-FPESLVIQAYFACEKNENLAANFLLSQ   42 (47)
T ss_dssp             CHHHHTTTT-TTT-CCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred             hHHHHHHHH-HcC-CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            445665555 235 689999999999999999999999853

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.89  E-value=0.037  Score=36.09  Aligned_cols=40  Identities=18%  Similarity=0.467  Sum_probs=31.9

Q ss_pred             ChhhHHHHhhcCCcCCHHHHHHHHHHhCC-CHHHHHHHHHHHh
Q 031691          104 NAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQ  145 (155)
Q Consensus       104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~g-did~Ai~~Ll~~~  145 (155)
                      ++..+++++. -| .+.+.++++|..++| |++.|+++|+.-.
T Consensus        19 ~e~~i~~L~~-MG-F~~~~a~~AL~~t~~~nve~A~ewL~~~~   59 (64)
T 2cpw_A           19 HGSALDVLLS-MG-FPRARAQKALASTGGRSVQTACDWLFSHS   59 (64)
T ss_dssp             CCCHHHHHHH-HT-CCHHHHHHHHHHTTTSCHHHHHHHHHSCC
T ss_pred             CHHHHHHHHH-cC-CCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence            3456666664 46 478999999999999 9999999998643

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.83  E-value=0.065  Score=36.73  Aligned_cols=44  Identities=16%  Similarity=0.253  Sum_probs=35.4

Q ss_pred             CChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691          103 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE  148 (155)
Q Consensus       103 ~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~  148 (155)
                      .++..+++++. -| .+...++++|..++||++.|+++|+.-....
T Consensus        28 ~~e~~i~~L~~-MG-F~~~~a~~AL~~t~~nve~A~ewL~~~~~d~   71 (83)
T 2dai_A           28 VDEAALRQLTE-MG-FPENRATKALQLNHMSVPQAMEWLIEHAEDP   71 (83)
T ss_dssp             CCHHHHHHHHH-HT-CCHHHHHHHHHHTTSCHHHHHHHHHHGGGCS
T ss_pred             CCHHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence            45667777764 46 5789999999999999999999999865443

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.73  E-value=0.11  Score=33.89  Aligned_cols=46  Identities=13%  Similarity=0.146  Sum_probs=35.9

Q ss_pred             cCChhhHHHHhhcCCcCCHHHHHHHHHHhCC-CHHHHHHHHHHHhCCCc
Q 031691          102 IINAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQGTEE  149 (155)
Q Consensus       102 ~~d~~~v~~v~~~tGc~d~~~I~~~L~~~~g-did~Ai~~Ll~~~~~~~  149 (155)
                      ..++..+++.+. -| .+.+.++++|..+++ |++.|+++|+.-....+
T Consensus         7 ~~~e~~v~~L~~-MG-F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d   53 (64)
T 2crn_A            7 GSSPSLLEPLLA-MG-FPVHTALKALAATGRKTAEEALAWLHDHCNDPS   53 (64)
T ss_dssp             CCSCSSHHHHHH-TS-CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTT
T ss_pred             CCCHHHHHHHHH-cC-CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence            335556776665 46 578999999999987 99999999998765443

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=94.72  E-value=0.034  Score=38.38  Aligned_cols=39  Identities=26%  Similarity=0.296  Sum_probs=32.6

Q ss_pred             ChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691          104 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE  144 (155)
Q Consensus       104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~  144 (155)
                      +++.|++++. -| .+...++.+|+.++||++.|+++|+.-
T Consensus        29 ~ee~I~~Lv~-MG-F~~~~A~~AL~~t~gdve~A~e~L~sh   67 (83)
T 1veg_A           29 SQESINQLVY-MG-FDTVVAEAALRVFGGNVQLAAQTLAHH   67 (83)
T ss_dssp             CHHHHHHHHH-HS-CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            4566776664 36 589999999999999999999999984

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.67  E-value=0.059  Score=32.67  Aligned_cols=37  Identities=27%  Similarity=0.452  Sum_probs=29.4

Q ss_pred             ChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          104 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      +++.+++++. -| .+.+.++++|..+ ||++.|+++|+.
T Consensus         9 ~~~~v~~L~~-MG-F~~~~a~~AL~~~-~n~e~A~~~L~~   45 (47)
T 2ekk_A            9 NQQQLQQLMD-MG-FTREHAMEALLNT-STMEQATEYLLT   45 (47)
T ss_dssp             CHHHHHHHHH-HH-CCHHHHHHHHHHS-CSHHHHHHHHHT
T ss_pred             CHHHHHHHHH-cC-CCHHHHHHHHHHc-CCHHHHHHHHHc
Confidence            4556766664 46 4679999999999 599999999984

>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1

Probab=94.64  E-value=0.06  Score=36.62  Aligned_cols=42  Identities=17%  Similarity=0.366  Sum_probs=36.4

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE  148 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~  148 (155)
                      ...+..+-||..|.....++|++.+||+..||.+|-+.+-..
T Consensus        27 lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~~~~   68 (80)
T 1vdl_A           27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNAKT   68 (80)
T ss_dssp             HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcccccC
Confidence            345666679999999999999999999999999998876554

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.58  E-value=0.031  Score=38.61  Aligned_cols=41  Identities=24%  Similarity=0.266  Sum_probs=33.0

Q ss_pred             hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Q 031691          105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT  147 (155)
Q Consensus       105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~  147 (155)
                      ++.|++++. -|. +.+.++++|..+++|++.|+++|+.-...
T Consensus        22 ~~~I~qL~~-MGF-~~~~a~~AL~~~n~n~e~A~ewL~~h~~D   62 (85)
T 2dkl_A           22 SRLIKQLTD-MGF-PREPAEEALKSNNMNLDQAMSALLEKKVD   62 (85)
T ss_dssp             HHHHHHHHH-HTC-CHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHH-cCC-CHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence            556666664 475 78999999999999999999999975443

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=93.90  E-value=0.059  Score=39.24  Aligned_cols=30  Identities=37%  Similarity=0.438  Sum_probs=26.8

Q ss_pred             CCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691          115 SGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ  145 (155)
Q Consensus       115 tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~  145 (155)
                      -| .+.++|+++|..++||+|.|++.|+.--
T Consensus        86 MG-F~~~~a~~AL~~~~nd~erAlewL~~~~  115 (118)
T 4ae4_A           86 MG-FELKDIKEVLLLHNNDQDNALEDLMARA  115 (118)
T ss_dssp             TT-CCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred             cC-CCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence            46 6899999999999999999999998753

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=93.80  E-value=0.077  Score=34.80  Aligned_cols=40  Identities=20%  Similarity=0.408  Sum_probs=31.2

Q ss_pred             hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691          105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG  146 (155)
Q Consensus       105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~  146 (155)
                      +..|..++ .-| +..+.++.+|++++||||.|++.|+.-..
T Consensus        20 ~e~V~~Lv-sMG-Fs~~qA~kALKat~~NvErAaDWLFSH~D   59 (63)
T 1wgn_A           20 RQCVETVV-NMG-YSYECVLRAMKKKGENIEQILDYLFAHSG   59 (63)
T ss_dssp             HHHHHHHH-HHH-CCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred             HHHHHHHH-HcC-CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            34555555 335 57889999999999999999999987543

>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.27  E-value=0.1  Score=34.20  Aligned_cols=41  Identities=15%  Similarity=0.319  Sum_probs=34.9

Q ss_pred             hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Q 031691          106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT  147 (155)
Q Consensus       106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~  147 (155)
                      +.+...|.-||| +....++.|+.+++|++.||....+....
T Consensus        19 ~~i~qF~~iTg~-~~~~A~~~Le~~~WdLe~Al~~ff~~~~~   59 (66)
T 2dzl_A           19 VMINQFVLAAGC-AADQAKQLLQAAHWQFETALSTFFQETNI   59 (66)
T ss_dssp             HHHHHHHHHHCC-CHHHHHHHHHTTTTCHHHHHHHHHTCSCC
T ss_pred             HHHHHHHHHcCC-CHHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence            467889999999 67789999999999999999988765443

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=93.12  E-value=0.14  Score=37.11  Aligned_cols=41  Identities=7%  Similarity=0.298  Sum_probs=33.3

Q ss_pred             ChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691          104 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG  146 (155)
Q Consensus       104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~  146 (155)
                      ++..++.++. -|+ +...++++|..++||++.|+++|+.-..
T Consensus        78 ~e~~v~~L~~-MGF-~~~~a~~AL~~~~~~~e~A~e~L~~~~~  118 (126)
T 2lbc_A           78 PEEIVAIITS-MGF-QRNQAIQALRATNNNLERALDWIFSHPE  118 (126)
T ss_dssp             CHHHHHHHHH-HTS-CHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred             CHHHHHHHHH-cCC-CHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            4556776664 475 6999999999999999999999986444

>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=92.17  E-value=0.017  Score=42.73  Aligned_cols=41  Identities=22%  Similarity=0.353  Sum_probs=35.0

Q ss_pred             HHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691          108 IKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE  148 (155)
Q Consensus       108 v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~  148 (155)
                      +.+..+-||..|.+.+.++|++++||+..||.+|-..+...
T Consensus        22 LNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~~~   62 (129)
T 2lva_A           22 LNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKE   62 (129)
Confidence            34555579999999999999999999999999998875544

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=91.70  E-value=0.24  Score=31.41  Aligned_cols=37  Identities=16%  Similarity=0.292  Sum_probs=30.0

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ  145 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~  145 (155)
                      .|++.|. .| +|.+.+.++|...+||+|.|-..|+..-
T Consensus        12 ~I~~L~~-lG-F~r~~ai~AL~~a~nnve~Aa~iL~ef~   48 (53)
T 2d9s_A           12 EIERLMS-QG-YSYQDIQKALVIAHNNIEMAKNILREFS   48 (53)
T ss_dssp             HHHHHHH-HT-CCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHH-cC-CCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            4555552 34 6899999999999999999999998643

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=91.67  E-value=0.47  Score=32.37  Aligned_cols=45  Identities=11%  Similarity=0.280  Sum_probs=34.8

Q ss_pred             CChhhHHHHhhcCCcCCHHHHHHHHHHhC-CCHHHHHHHHHHHhCCCc
Q 031691          103 INAGSIKLVMAGSGCENSEKVEEVLLQVG-GDVDAAIEFLIAEQGTEE  149 (155)
Q Consensus       103 ~d~~~v~~v~~~tGc~d~~~I~~~L~~~~-gdid~Ai~~Ll~~~~~~~  149 (155)
                      .++..+++++. -| .+...++++|...+ +|++.|+++|+.-....+
T Consensus        28 ~~e~~v~~L~~-MG-F~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d   73 (84)
T 1vek_A           28 ANEEIVAQLVS-MG-FSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPD   73 (84)
T ss_dssp             CCHHHHHHHHH-HT-CCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCST
T ss_pred             CCHHHHHHHHH-cC-CCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccc
Confidence            35667777774 46 47899999999885 799999999998665443

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=91.55  E-value=0.26  Score=31.16  Aligned_cols=37  Identities=27%  Similarity=0.288  Sum_probs=30.4

Q ss_pred             hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691          106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE  144 (155)
Q Consensus       106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~  144 (155)
                      +.|++.| +-| +|.+.+.++|...+||++-|-..|+..
T Consensus        13 ~~Ia~Lm-~mG-Fsr~~ai~AL~~a~nnve~AaniLlef   49 (52)
T 2ooa_A           13 AKIAKLM-GEG-YAFEEVKRALEIAQNNVEVARSILREF   49 (52)
T ss_dssp             HHHHHHH-HTT-CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHH-HcC-CCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence            3556666 235 689999999999999999999999864

>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1

Probab=91.01  E-value=0.23  Score=39.27  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=32.8

Q ss_pred             hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691          106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE  144 (155)
Q Consensus       106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~  144 (155)
                      ..|++....||. -..-.+.+|.+++||+|.||++|...
T Consensus         5 ~~VKeLRe~TGa-gmmdCKkAL~e~~GD~ekAie~LR~k   42 (196)
T 1aip_C            5 ELIKKLREATGA-GMMDVKRALEDAGWDEEKAVQLLRER   42 (196)
T ss_dssp             HHHHHHHHHHCC-CHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence            357888889996 58889999999999999999999753

>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1

Probab=90.14  E-value=0.32  Score=40.48  Aligned_cols=37  Identities=19%  Similarity=0.247  Sum_probs=33.1

Q ss_pred             hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      ..|++....||. -..-.+++|.+++||+|.||++|..
T Consensus         6 ~~VKeLRe~TGa-gmmdCKKAL~e~~GD~ekAie~LR~   42 (291)
T 1xb2_B            6 ELLMKLRRKTGY-SFINCKKALETCGGDLKQAESWLHK   42 (291)
T ss_dssp             HHHHHHHHHHCC-CHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            357888889996 5899999999999999999999986

>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=89.55  E-value=0.55  Score=31.38  Aligned_cols=40  Identities=15%  Similarity=-0.069  Sum_probs=31.9

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG  146 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~  146 (155)
                      .|+.|..-..-.-..-|+++|..+++|+|.+|..||+.+-
T Consensus        16 ~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~L   55 (71)
T 2di0_A           16 LISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEERL   55 (71)
T ss_dssp             HHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccCC
Confidence            3455555555556889999999999999999999998654

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=87.05  E-value=1.2  Score=28.45  Aligned_cols=37  Identities=16%  Similarity=0.195  Sum_probs=29.6

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ  145 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~  145 (155)
                      .|...|  +-.+|.+.++++|...++||+.|-..||..-
T Consensus        10 ~Ia~L~--smGfsr~da~~AL~ia~Ndv~~AtNiLlEf~   46 (56)
T 2juj_A           10 EIENLM--SQGYSYQDIQKALVIAQNNIEMAKNILREFV   46 (56)
T ss_dssp             HHHHHH--TTTCCHHHHHHHHHHTTTCSHHHHHHHHHSC
T ss_pred             HHHHHH--HcCCCHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            344444  2237999999999999999999999998754

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=86.85  E-value=0.96  Score=27.79  Aligned_cols=27  Identities=11%  Similarity=0.190  Sum_probs=25.1

Q ss_pred             CCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691          118 ENSEKVEEVLLQVGGDVDAAIEFLIAE  144 (155)
Q Consensus       118 ~d~~~I~~~L~~~~gdid~Ai~~Ll~~  144 (155)
                      +|.+.++++|...++||+.|-..|+..
T Consensus        16 f~~~~~~rAL~ia~Nnie~A~nIL~ef   42 (46)
T 2oo9_A           16 YSYQDIQKALVIAQNNIEMAKNILREF   42 (46)
T ss_dssp             BCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence            799999999999999999999999853

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=86.45  E-value=0.65  Score=36.00  Aligned_cols=36  Identities=25%  Similarity=0.268  Sum_probs=28.9

Q ss_pred             hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      +.|++.+ .-| .|...++++|..+++|++.|+++|+.
T Consensus       165 ekV~~l~-~MG-f~~~~a~~AL~~~~wd~~~A~e~L~~  200 (201)
T 3k9o_A          165 KKIENLC-AMG-FDRNAVIVALSSKSWDVETATELLLS  200 (201)
T ss_dssp             HHHHHHH-TTT-CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHH-HcC-CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            3455444 235 58999999999999999999999985

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=84.73  E-value=2.1  Score=30.69  Aligned_cols=41  Identities=15%  Similarity=0.242  Sum_probs=31.4

Q ss_pred             hhhHHHHhhcCCcCCHHHHHHHHHHhCC-CHHHHHHHHHHHhCC
Q 031691          105 AGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQGT  147 (155)
Q Consensus       105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~g-did~Ai~~Ll~~~~~  147 (155)
                      +..++..+. -| +....++++|..+++ |++.|+++|+.-...
T Consensus         4 ~~~l~~L~~-MG-F~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d   45 (126)
T 2lbc_A            4 ESSVMQLAE-MG-FPLEACRKAVYFTGNMGAEVAFNWIIVHMEE   45 (126)
T ss_dssp             THHHHHHHT-TS-SCCHHHHHHHHHHTSCCHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHH-cC-CCHHHHHHHHHHcCCCCHHHHHHHHHHhccc
Confidence            445555553 45 468999999999966 999999999986553

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=83.33  E-value=0.47  Score=40.49  Aligned_cols=37  Identities=22%  Similarity=0.326  Sum_probs=30.8

Q ss_pred             hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      +..|+.+|+ -| ++.+.|+++|+..+||+|.|++||+.
T Consensus       169 ~~~i~~l~~-MG-f~~~~~~~AL~a~~nn~~~A~e~L~~  205 (368)
T 1oqy_A          169 ETMLTEIMS-MG-YERERVVAALRASYNNPHRAVEYLLT  205 (368)
T ss_dssp             HHHHHHHHT-TT-CCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred             HHHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            456666663 34 78999999999999999999999974

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=80.92  E-value=1.8  Score=31.25  Aligned_cols=37  Identities=19%  Similarity=0.398  Sum_probs=29.5

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ  145 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~  145 (155)
                      .++.++ .-| +....++.+|+.+++|++.|+++|++-+
T Consensus        11 ~v~~l~-~MG-Fp~~~~~kAl~~~g~~~e~amewL~~h~   47 (118)
T 4ae4_A           11 CVETVV-NMG-YSYECVLRAMKAAGANIEQILDYLFAHG   47 (118)
T ss_dssp             HHHHHH-HTT-CCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHH-HcC-CCHHHHHHHHHHHCcCHHHHHHHHHHhc
Confidence            344444 234 5799999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	155
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	2e-08
d2dnaa1	50	a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {M	0.002

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 2e-08
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 1   METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHE--ARMIHLSYHDGEHYN 58
           +E   T   H+++ A S      + +         + +  + E     ++L Y    HYN
Sbjct: 162 VEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTS-HYN 220

Query: 59  GVRLKE 64
            +   +
Sbjct: 221 ILYAAD 226

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.3 bits (74), Expect = 0.002
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 116 GCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 146
           G  N     + L+   GD +AAI  L + QG
Sbjct: 19  GFVNYNANLQALIATDGDTNAAIYKLKSSQG 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.15
d1wgla_	59	Toll-interacting protein {Human (Homo sapiens) [Ta	97.51
d1mn3a_	54	Vacuolar protein sorting-associated protein vps9 {	97.28
d2daha1	41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	97.21
d2bwba1	44	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.12
d2dnaa1	50	Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus	97.05
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	97.04
d1wj7a1	91	Ubiquitin-associated protein 2-like Ubap2l {Mouse	97.03
d1veja1	61	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	96.88
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	96.83
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	96.64
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	96.53
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	96.52
d1v92a_	46	NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {	96.44
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	96.34
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	96.22
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	96.08
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	95.51
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	94.78
d1vdla_	80	Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (M	93.82
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	89.53
d2cp8a1	41	Migration-inducing protein 19 NBR1 {Human (Homo sa	88.49
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	87.48
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	82.12
d1umqa_	60	Photosynthetic apparatus regulatory protein PprA (	81.03
d2di0a1	63	Activating signal cointegrator 1 complex subunit 2	80.36

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2e-11  Score=96.31  Aligned_cols=63  Identities=17%  Similarity=0.159  Sum_probs=48.3

Q ss_pred             CCCCCccCCHHHHHHHHhhcCCcEEEEecCCCcEEEc--ccCCCCCceEEEEeecCccccccccCC
Q 031691            1 METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIR--NFDYHEARMIHLSYHDGEHYNGVRLKE   64 (155)
Q Consensus         1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~~~i~--~~~~~~~~~i~LsYh~geHYnSvr~~~   64 (155)
                      |.+.++||||+||+|+|++|+++|.|+..+.+...+.  .++....++|+|.|+.| |||.+.+.+
T Consensus       162 v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~~~~~~~~I~Lly~pg-HYdiLY~~~  226 (228)
T d1tffa_         162 VEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTS-HYNILYAAD  226 (228)
T ss_dssp             TSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSSCSEEEEEETT-EEEEEEECC
T ss_pred             HccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccCCCCCCCEEEEEeCCC-CcccCccCC
Confidence            5678999999999999999999999999876654443  24445678999999765 999998764

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=4.9e-05  Score=48.13  Aligned_cols=42  Identities=24%  Similarity=0.207  Sum_probs=35.7

Q ss_pred             hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Q 031691          106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT  147 (155)
Q Consensus       106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~  147 (155)
                      ..++.+..-..-.|.+.|+.+|++++||+|.||+.||++...
T Consensus        11 e~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~Msd~   52 (59)
T d1wgla_          11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE   52 (59)
T ss_dssp             HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Confidence            345666666777899999999999999999999999999754

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Vacuolar protein sorting-associated protein vps9
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=0.00014  Score=45.24  Aligned_cols=39  Identities=8%  Similarity=0.160  Sum_probs=33.4

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ  145 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~  145 (155)
                      +++.+..-.+--|.+.|+.+|+.++|++|+||+.||++.
T Consensus        15 ~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~aidaLL~Ms   53 (54)
T d1mn3a_          15 TLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALLSLS   53 (54)
T ss_dssp             HHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence            445555556778999999999999999999999999985

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00021  Score=41.95  Aligned_cols=32  Identities=41%  Similarity=0.522  Sum_probs=28.9

Q ss_pred             hhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          112 MAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       112 ~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      +..-|-.|.++..++|+..+|||++||+.|+.
T Consensus         9 L~~MGF~d~~~Ni~AL~~t~Gdv~~Aie~Ll~   40 (41)
T d2daha1           9 LRSMGFLNREANLQALIATGGDVDAAVEKLRQ   40 (41)
T ss_dssp             HHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            44559999999999999999999999999985

>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.00031  Score=41.81  Aligned_cols=33  Identities=21%  Similarity=0.353  Sum_probs=29.7

Q ss_pred             HhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          111 VMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       111 v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      .+..-|-.|.+...++|+.++|||.+||+.||.
T Consensus        11 qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~   43 (44)
T d2bwba1          11 QLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN   43 (44)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHhC
Confidence            355679999999999999999999999999984

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00033  Score=42.81  Aligned_cols=35  Identities=29%  Similarity=0.322  Sum_probs=30.7

Q ss_pred             HhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691          111 VMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ  145 (155)
Q Consensus       111 v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~  145 (155)
                      .+..-|-.|.++..++|+.++|||++||+.|+.-.
T Consensus        14 qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~~~   48 (50)
T d2dnaa1          14 CLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQ   48 (50)
T ss_dssp             HHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCC
T ss_pred             HHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence            34456999999999999999999999999999743

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.04  E-value=0.00053  Score=44.68  Aligned_cols=42  Identities=24%  Similarity=0.417  Sum_probs=33.9

Q ss_pred             CChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691          103 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG  146 (155)
Q Consensus       103 ~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~  146 (155)
                      .+++.|+.++ .-| .+.+.++++|+.|+||+|.|+++||..+.
T Consensus        28 ~~ee~i~~L~-~MG-F~~~~a~~AL~~~~~n~e~A~~~Ll~~~~   69 (73)
T d1vg5a_          28 ASEEQIQKLV-AMG-FDRTQVEVALAAADDDLTVAVEILMSQSG   69 (73)
T ss_dssp             CCHHHHHHHH-TTT-CCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred             cCHHHHHHHH-HhC-CCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence            3456677666 346 48999999999999999999999997653

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.00034  Score=47.59  Aligned_cols=40  Identities=23%  Similarity=0.361  Sum_probs=34.5

Q ss_pred             hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691          105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ  145 (155)
Q Consensus       105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~  145 (155)
                      ...|++||.-|||+ .+-+.=+|-+|+||++.||.+||...
T Consensus        33 ~~kVkql~e~T~rs-ede~~~ALhDcn~D~~~AIn~lLEg~   72 (91)
T d1wj7a1          33 EEKVKQLIDITGKN-QDECVIALHDCNGDVNRAINVLLEGN   72 (91)
T ss_dssp             HHHHHHHHHHTCCC-HHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHhCCC-HHHHHHHHhcCCccHHHHHHHHHhcC
Confidence            44789999999996 66677799999999999999999654

>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00041  Score=44.00  Aligned_cols=33  Identities=30%  Similarity=0.498  Sum_probs=29.7

Q ss_pred             HhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          111 VMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       111 v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      .+..-|-.|.+...++|+..+|||++||++||+
T Consensus        28 qL~eMGF~d~~~Nl~AL~~t~Gdv~~Aie~Ll~   60 (61)
T d1veja1          28 ELKALGFANRDANLQALVATDGDIHAAIEMLLG   60 (61)
T ss_dssp             HHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            345669999999999999999999999999985

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00054  Score=43.48  Aligned_cols=42  Identities=17%  Similarity=0.303  Sum_probs=33.3

Q ss_pred             cCChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691          102 IINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ  145 (155)
Q Consensus       102 ~~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~  145 (155)
                      +.+++.|+.+|. -| ++.+.++++|+.+++|++.|+++||.-.
T Consensus        17 ~~de~~v~~L~~-MG-F~~~~a~~AL~~~~~n~e~A~~~Lls~~   58 (63)
T d1wgna_          17 PSERQCVETVVN-MG-YSYECVLRAMKKKGENIEQILDYLFAHS   58 (63)
T ss_dssp             HHHHHHHHHHHH-HH-CCHHHHHHHHHHHCSCHHHHHHHHHHHS
T ss_pred             chhHHHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence            334556766663 34 4899999999999999999999999754

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.0013  Score=40.68  Aligned_cols=38  Identities=24%  Similarity=0.349  Sum_probs=33.7

Q ss_pred             hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      ...|++....||+ -+...+++|++++||+|.|+++|..
T Consensus         5 ~~~iK~LR~~Tga-g~~dCKkAL~e~~gD~ekA~e~Lr~   42 (54)
T d1efub3           5 ASLVKELRERTGA-GMMDCKKALTEANGDIELAIENMRK   42 (54)
T ss_dssp             HHHHHHHHHHHCC-CHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            4568888899997 4999999999999999999999964

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=96.53  E-value=0.0014  Score=40.73  Aligned_cols=38  Identities=18%  Similarity=0.255  Sum_probs=33.4

Q ss_pred             hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691          106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE  144 (155)
Q Consensus       106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~  144 (155)
                      +.|++....||. -+...+++|++++||+|.|+++|...
T Consensus         6 ~lvk~LRe~Tga-~~~dcKkAL~e~~gD~ekA~e~Lrkk   43 (56)
T d1xb2b1           6 ELLMKLRRKTGY-SFINCKKALETCGGDLKQAESWLHKQ   43 (56)
T ss_dssp             HHHHHHHHHHCC-CHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            467888889997 59999999999999999999999753

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00052  Score=40.08  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=29.5

Q ss_pred             hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691          106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI  142 (155)
Q Consensus       106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll  142 (155)
                      .+|+.++. -| .+.+.++++|+.++||+|.|+++||
T Consensus         6 ~~i~~L~~-MG-F~~~~a~~AL~~~~~N~e~A~~~Ll   40 (41)
T d1oqya1           6 TMLTEIMS-MG-YERERVVAALRASYNNPHRAVEYLL   40 (41)
T ss_dssp             HHHHHHHT-TT-CCSHHHHHHHHHSCSSTTHHHHTTT
T ss_pred             HHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHh
Confidence            45666663 45 6899999999999999999999997

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.44  E-value=0.002  Score=38.32  Aligned_cols=37  Identities=16%  Similarity=0.280  Sum_probs=33.3

Q ss_pred             hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      +.|++.|+-||| +.+..++.|+.+++|++.||..-++
T Consensus         7 ~lI~qF~~iTg~-~~~~A~~~Le~~~w~Le~Ai~~yfe   43 (46)
T d1v92a_           7 DALREFVAVTGA-EEDRARFFLESAGWDLQIALASFYE   43 (46)
T ss_dssp             HHHHHHHHHTCC-CHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred             HHHHHHHHHHCc-CHHHHHHHHHHcCCcHHHHHHHHHh
Confidence            478899999999 7999999999999999999987664

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.34  E-value=0.0049  Score=39.87  Aligned_cols=42  Identities=21%  Similarity=0.489  Sum_probs=34.0

Q ss_pred             CChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691          103 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG  146 (155)
Q Consensus       103 ~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~  146 (155)
                      .++..|+.++. -| .+.+.++++|+.+++|++.||++||.-..
T Consensus        28 ~d~~~i~~L~~-MG-F~~~~a~~AL~~~~~n~e~Av~~Lls~~~   69 (73)
T d1wiva_          28 IDQSSVDTLLS-FG-FAEDVARKALKASGGDIEKATDWVFNNSG   69 (73)
T ss_dssp             SCHHHHHHHHH-HT-CCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred             CCHHHHHHHHh-cC-CCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence            34566776663 46 58999999999999999999999997543

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0097  Score=37.22  Aligned_cols=46  Identities=17%  Similarity=0.362  Sum_probs=36.9

Q ss_pred             cCChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCCc
Q 031691          102 IINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTEE  149 (155)
Q Consensus       102 ~~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~~  149 (155)
                      ..|+..|+.+|. -| .+...++++|+.+++|++.|+++|+.-....+
T Consensus         7 ~~d~~~v~~L~~-MG-F~~~~a~~AL~~~~~~~e~A~~wL~~~~~~~~   52 (63)
T d1wjia_           7 GVDEKALKHITE-MG-FSKEASRQALMDNGNNLEAALNVLLTSNKQKP   52 (63)
T ss_dssp             SSCHHHHHHHHT-TT-CCHHHHHHHHHHTTSCHHHHHHHHHHHSSCCC
T ss_pred             ccCHHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCCC
Confidence            345667777774 35 68999999999999999999999999765543

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.08  E-value=0.0036  Score=38.24  Aligned_cols=37  Identities=24%  Similarity=0.314  Sum_probs=31.8

Q ss_pred             hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      +.|++....||- -+...+++|++++||+|.|+++|-.
T Consensus         4 elvK~LR~~Tga-~~~dcKkAL~e~~gD~ekA~e~Lr~   40 (52)
T d1aipc1           4 ELIKKLREATGA-GMMDVKRALEDAGWDEEKAVQLLRE   40 (52)
T ss_dssp             HHHHHHHHHHCC-CHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            357777888885 5899999999999999999999964

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=95.51  E-value=0.013  Score=34.21  Aligned_cols=35  Identities=26%  Similarity=0.428  Sum_probs=29.1

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA  143 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~  143 (155)
                      +|++++ +-| .+.+..+++|+.+++|.++|+-+||+
T Consensus         7 ai~eL~-~MG-F~e~~A~~AL~k~~wnleaAtN~LLd   41 (43)
T d2g3qa1           7 AVEELS-GMG-FTEEEAHNALEKCNWDLEAATNFLLD   41 (43)
T ss_dssp             HHHHHH-TTT-SCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHHH-hcC-CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            556655 335 58999999999999999999999985

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.78  E-value=0.055  Score=33.76  Aligned_cols=46  Identities=15%  Similarity=0.343  Sum_probs=36.1

Q ss_pred             CcCChhhHHHHhhcCCcCCHHHHHHHHHHhCC-CHHHHHHHHHHHhCCC
Q 031691          101 GIINAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQGTE  148 (155)
Q Consensus       101 ~~~d~~~v~~v~~~tGc~d~~~I~~~L~~~~g-did~Ai~~Ll~~~~~~  148 (155)
                      ...|+.++++++. -|+ +.+.++++|..+++ ++++|+++|+.-....
T Consensus         6 s~~d~~~l~~L~~-MGF-~~~~a~~AL~~t~n~~~e~A~~Wl~~h~~d~   52 (64)
T d1whca_           6 SGAELTALESLIE-MGF-PRGRAEKALALTGNQGIEAAMDWLMEHEDDP   52 (64)
T ss_dssp             CCCCCCHHHHHHT-TTC-CHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred             CccCHHHHHHHHH-cCC-CHHHHHHHHHHhCCCCHHHHHHHHHHCCCCC
Confidence            3445667888774 464 79999999999977 8999999999866543

>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin carboxyl-terminal hydrolase 25
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.82  E-value=0.038  Score=35.94  Aligned_cols=42  Identities=17%  Similarity=0.366  Sum_probs=36.4

Q ss_pred             hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691          107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE  148 (155)
Q Consensus       107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~  148 (155)
                      ...+..+-||..|.+...++|.+.+||+..||.+|-+.+-..
T Consensus        27 lLNQLrEITGIqD~q~L~~ALkas~Gdl~~AV~~LT~~~~~~   68 (80)
T d1vdla_          27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNAKT   68 (80)
T ss_dssp             HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHhcCCCHHHHHHHHhcCCCCC
Confidence            445666679999999999999999999999999998876554

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.53  E-value=0.21  Score=29.72  Aligned_cols=37  Identities=19%  Similarity=0.488  Sum_probs=28.9

Q ss_pred             hhhHHHHhhcCCcCCHHHHHHHHHHhCC-CHHHHHHHHHH
Q 031691          105 AGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIA  143 (155)
Q Consensus       105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~g-did~Ai~~Ll~  143 (155)
                      +..++..+. -| .+.+..+++|...++ |++.|++.||.
T Consensus        13 ~~~l~~L~~-MG-F~~~~a~~AL~~t~n~~ve~A~~WLl~   50 (51)
T d2cpwa1          13 GSALDVLLS-MG-FPRARAQKALASTGGRSVQTACDWLFS   50 (51)
T ss_dssp             CCHHHHHHH-HT-CCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred             HHHHHHHHH-cC-CCHHHHHHHHHHHCCCCHHHHHHHHHc
Confidence            445665553 35 579999999999887 99999999984

>d2cp8a1 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Migration-inducing protein 19 NBR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.49  E-value=0.27  Score=28.05  Aligned_cols=31  Identities=10%  Similarity=0.016  Sum_probs=28.0

Q ss_pred             cCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691          114 GSGCENSEKVEEVLLQVGGDVDAAIEFLIAE  144 (155)
Q Consensus       114 ~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~  144 (155)
                      .-|..|.++=.+.|+.+++|+..+|-.||++
T Consensus        11 EMGF~DR~lNq~LL~KH~~nl~~vV~eLlq~   41 (41)
T d2cp8a1          11 EMGFCDRQLNLRLLKKHNYNILQVVTELLQL   41 (41)
T ss_dssp             HHTCCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred             HhCcchhHHHHHHHHHccCcHHHHHHHHHcC
Confidence            3477799999999999999999999999984

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.48  E-value=0.77  Score=29.69  Aligned_cols=45  Identities=11%  Similarity=0.280  Sum_probs=34.1

Q ss_pred             CChhhHHHHhhcCCcCCHHHHHHHHHHh-CCCHHHHHHHHHHHhCCCc
Q 031691          103 INAGSIKLVMAGSGCENSEKVEEVLLQV-GGDVDAAIEFLIAEQGTEE  149 (155)
Q Consensus       103 ~d~~~v~~v~~~tGc~d~~~I~~~L~~~-~gdid~Ai~~Ll~~~~~~~  149 (155)
                      .|++.++.++. -| .+...++++|... ++|++.|+++|+.-....+
T Consensus        28 ~d~~~v~~L~~-MG-F~~~~a~~AL~~t~n~~~e~A~~Wl~~h~~d~d   73 (84)
T d1veka_          28 ANEEIVAQLVS-MG-FSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPD   73 (84)
T ss_dssp             CCHHHHHHHHH-HT-CCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCST
T ss_pred             CCHHHHHHHHH-cC-CCHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCC
Confidence            35667776663 45 5799999999885 5699999999998666554

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.12  E-value=1.3  Score=25.93  Aligned_cols=42  Identities=12%  Similarity=0.184  Sum_probs=30.7

Q ss_pred             hhHHHHhhcCCcCCHHHHHHHHHHhC-CCHHHHHHHHHHHhCCCc
Q 031691          106 GSIKLVMAGSGCENSEKVEEVLLQVG-GDVDAAIEFLIAEQGTEE  149 (155)
Q Consensus       106 ~~v~~v~~~tGc~d~~~I~~~L~~~~-gdid~Ai~~Ll~~~~~~~  149 (155)
                      ..++..+ .-| .+....+++|...+ +++++|++.|++-....+
T Consensus         4 ~~v~~L~-~MG-F~~~~a~~Al~~t~n~~ve~A~~Wl~~h~~d~d   46 (51)
T d2crna1           4 SLLEPLL-AMG-FPVHTALKALAATGRKTAEEALAWLHDHCNDPS   46 (51)
T ss_dssp             SSHHHHH-HTS-CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTT
T ss_pred             HHHHHHH-HcC-CCHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcC
Confidence            3455544 235 57899999999875 599999999998665443

>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: FIS-like
domain: Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.03  E-value=0.76  Score=27.58  Aligned_cols=23  Identities=13%  Similarity=0.174  Sum_probs=20.2

Q ss_pred             CHHHHHHHHHHhCCCHHHHHHHH
Q 031691          119 NSEKVEEVLLQVGGDVDAAIEFL  141 (155)
Q Consensus       119 d~~~I~~~L~~~~gdid~Ai~~L  141 (155)
                      ..+.|.++|+.|+||+-.|...|
T Consensus        21 Er~~I~~aL~~~~gn~~~aA~~L   43 (60)
T d1umqa_          21 RWEHIQRIYEMCDRNVSETARRL   43 (60)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHH
Confidence            46789999999999999988766

>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Activating signal cointegrator 1 complex subunit 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.36  E-value=0.58  Score=29.02  Aligned_cols=29  Identities=14%  Similarity=0.009  Sum_probs=25.4

Q ss_pred             CCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691          118 ENSEKVEEVLLQVGGDVDAAIEFLIAEQG  146 (155)
Q Consensus       118 ~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~  146 (155)
                      .-..=|++.|+..++|.|.+|..||+.+-
T Consensus        20 LG~GFi~~~L~~Y~~n~E~vI~~lLe~~L   48 (63)
T d2di0a1          20 LGEGFILACLEYYHYDPEQVINNILEERL   48 (63)
T ss_dssp             SCHHHHHHHHHHTTTCHHHHHHHHHTTCC
T ss_pred             CcHHHHHHHHHHhCCCHHHHHHHHHccCC
Confidence            34678999999999999999999999763