Citrus Sinensis ID: 031717

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEEVKFEHYKLAVGARLSADVTQHMENCLEKIKILEH
Secondary Structure (PSIPRED)
cccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccHHccccEEEEEEcccccEEEEEEcccHHHHHHHHHHHHHHHccEEEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEEEEccccccccccccEccHHHHHHHHHHHHHHHHcccHHHHHHccEEEEEEcccccEEEEEEccHHHHHHHHHHHHHHHcccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvgfknryMVVEVFldpnkelpvddpviltQFNVSKAIRDSILVNFGecglasslgsfqvkyvnpITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEEVKFEHYKLAVGARLSADVTQHMENCLEKIKILEH
Flexible Loop (DISEMBL)
MVGFKNRYMVVEVFLdpnkelpvddPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEEVKFEHYKLAVGARLSADVTQHMENCLEKIKILEH
Low Complexity Region (SEG)
MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEEVKFEHYKLAVGARLSADVTQHMENCLEKIKILEH
Disordered region (IsUnstruct)
***FKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEEVKFEHYKLAVGARLSADVTQHMENCLEKIKI***
Disordered Region (DISOPRED)
MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEEVK*************************KIKIL**
Disordered Region (DISEMBL)
MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEEVKFEHYKLAVGARLSADVTQHMENCLEKIKILEH
Disordered Region (DISPRO)
MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEEVKFEHYKLAVGARLSADVTQHMENCLEKIKILE*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEEVKFEHYKLAVGARLSADVTQHMENCLEKIKILEH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
Q6AWV1	151	Probable ribonuclease P/M	yes	no	0.974	0.993	0.645	3e-52
Q9UU90	139	Ribonucleases P/MRP prote	yes	no	0.753	0.834	0.344	1e-13
Q54EP3	171	Probable ribonuclease P/M	yes	no	0.733	0.660	0.322	3e-11
Q969H6	163	Ribonuclease P/MRP protei	yes	no	0.675	0.638	0.352	3e-10
Q1JQ92	170	Ribonuclease P/MRP protei	yes	no	0.675	0.611	0.336	4e-09
Q9DB28	169	Ribonuclease P/MRP protei	yes	no	0.688	0.627	0.324	3e-08
P28005	173	Ribonucleases P/MRP prote	yes	no	0.759	0.676	0.303	2e-06

>sp|Q6AWV1|POP5_ARATH Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1687 PE=2 SV=1

 Score =  203 bits (517), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 100/155 (64%), Positives = 127/155 (81%), Gaps = 5/155 (3%)

Query: 1   MVGFKNRYMVVEVFLDPNKELPVDD-PVILTQFNVSKAIRDSILVNFGECGLASSLGSFQ 59
           MVGFKNRYM++EVFLDP+K+L  +  P+ILTQFN+SKAI+DSILVNFGECGL SSLGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 60  VKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCE 119
           VKYVNPITKLCI+R+SRE+ ++VW A+T+V+SIGNC V+ N+LD+SG IRAC++ ALKC+
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 120 EVKFEHYKLAVGARLSADVTQHMENCLEKIKILEH 154
           + KFE         LS +  + M   LEKIK+LE+
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLEN 151

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: 5

>sp|Q9UU90|POP5_SCHPO Ribonucleases P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC830.09c PE=3 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 6/122 (4%)

Query: 1   MVGFKNRYMVVEVFLDPNKELPVDDPVI-----LTQFNVSKAIRDSILVNFGECGLASSL 55
           MV FK+RY++ EV     KE   D P I     +T  ++SK IR  +  NFG+ G+    
Sbjct: 1   MVRFKSRYLLFEVLYPEAKEF-FDYPTIPSDSSITTSSLSKIIRTMVAENFGDVGIGKVA 59

Query: 56  GSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAA 115
            S  VKY +P T   I+R SR+  +  W+A+ ++R +    V+  V+ +SG+I+  + AA
Sbjct: 60  SSLTVKYFSPNTSTGILRVSRQHFRLAWAALVLIRELYGKPVIIRVVRVSGTIKKAELAA 119

Query: 116 LK 117
           ++
Sbjct: 120 IE 121

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP, which cleaves pre-rRNA sequences.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q54EP3|POP5_DICDI Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum GN=pop5 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 5/118 (4%)

Query: 1   MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQV 60
           MV  KNRY++ EV    N++        L QF +S  +++ +    GE    +   + ++
Sbjct: 1   MVRLKNRYLMTEVIWHDNEKSTQLSDSWLFQF-ISNEVKEKL----GELTYEAFKKTLKI 55

Query: 61  KYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKC 118
            YVNP T + IIR S E  + +W+A+T++ S     + F ++ + GSIR C+ AA+K 
Sbjct: 56  IYVNPDTNIFIIRVSFEYYKSLWTALTLITSYYGVPIYFRMVHVGGSIRLCQKAAIKI 113

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q969H6|POP5_HUMAN Ribonuclease P/MRP protein subunit POP5 OS=Homo sapiens GN=POP5 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 15/119 (12%)

Query: 1   MVGFKNRYMVVE-VFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQ 59
           MV FK+RY++ E V  DP   L +DD V+      S  +RD+I    G  G A+    F 
Sbjct: 1   MVRFKHRYLLCELVSDDPRCRLSLDDRVL------SSLVRDTIARVHGTFGAAACSIGFA 54

Query: 60  VKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGN------CLVLFNVLDLSGSIRACK 112
           V+Y+N  T + ++R  +E  Q VWSA+  +  + N      C   FN L + G+IR C+
Sbjct: 55  VRYLNAYTGIVLLRCRKEFYQLVWSALPFITYLENKGHRYPC--FFNTLHVGGTIRTCQ 111

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q1JQ92|POP5_BOVIN Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus GN=POP5 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 15/119 (12%)

Query: 1   MVGFKNRYMVVEVFLD-PNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQ 59
           MV FK+RY++ EV  D P   L ++D V+ T       +RD+I    G  G A+    F 
Sbjct: 1   MVRFKHRYLLCEVVSDDPRCRLTLEDRVLGT------LVRDTIARVHGTFGAAACSIGFA 54

Query: 60  VKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGN------CLVLFNVLDLSGSIRACK 112
           V+Y+N  T + ++R  +E  + VWSA+  + S+ N      C +  N L + G+IR C+
Sbjct: 55  VRYLNAYTGIVLLRCRKEFYRLVWSALPFITSLENKGHRYPCFL--NTLHVGGTIRTCQ 111

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q9DB28|POP5_MOUSE Ribonuclease P/MRP protein subunit POP5 OS=Mus musculus GN=Pop5 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 11/117 (9%)

Query: 1   MVGFKNRYMVVE-VFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQ 59
           MV FK+RY++ E V  D    L +DD V+         +RD+I    G  G A+    F 
Sbjct: 1   MVRFKHRYLLCELVSEDARCRLSLDDRVL------GGLVRDTIARVHGAFGAAACSVGFA 54

Query: 60  VKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGN----CLVLFNVLDLSGSIRACK 112
           V+Y+N  T + ++R  ++  Q VWSA+  +  + N        FN L + G+IR C+
Sbjct: 55  VRYLNAYTGVVLLRCRKDFYQLVWSALPFITYLENKGHRYPCFFNTLHVGGTIRTCQ 111

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|P28005|POP5_YEAST Ribonucleases P/MRP protein subunit POP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POP5 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 15/132 (11%)

Query: 1   MVGFKNRYMVVEVFLDP---NKELPVDDP-VILTQFNVSKA----------IRDSILVNF 46
           MV  K+RY++ E+   P   N E  V    ++L+    S A          IR S+ +N 
Sbjct: 1   MVRLKSRYILFEIIFPPTDTNVEESVSKADILLSHHRASPADVSIKSILQEIRRSLSLNL 60

Query: 47  GECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCL-VLFNVLDLS 105
           G+ G A      Q+KY +  T   IIR  REDC  V  A+ ++  IG+   ++ N + +S
Sbjct: 61  GDYGSAKCNSLLQLKYFSNKTSTGIIRCHREDCDLVIMALMLMSKIGDVDGLIVNPVKVS 120

Query: 106 GSIRACKNAALK 117
           G+I+  +  A++
Sbjct: 121 GTIKKIEQFAMR 132

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP, which cleaves pre-rRNA sequences.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
224132544	154	predicted protein [Populus trichocarpa]	1.0	1.0	0.844	3e-72
118482082	154	unknown [Populus trichocarpa]	1.0	1.0	0.837	5e-72
224135587	154	predicted protein [Populus trichocarpa]	1.0	1.0	0.837	2e-71
224132540	154	predicted protein [Populus trichocarpa]	1.0	1.0	0.831	4e-70
225455163	154	PREDICTED: probable ribonuclease P/MRP p	1.0	1.0	0.798	2e-69
255544312	144	lipoate-protein ligase B, putative [Rici	0.935	1.0	0.826	6e-65
356500813	154	PREDICTED: probable ribonuclease P/MRP p	1.0	1.0	0.759	1e-63
351727563	154	uncharacterized protein LOC100527772 [Gl	1.0	1.0	0.753	6e-63
449443879	154	PREDICTED: probable ribonuclease P/MRP p	1.0	1.0	0.720	4e-60
357490389	153	hypothetical protein MTR_5g068650 [Medic	0.980	0.986	0.701	2e-57

>gi|224132544|ref|XP_002321344.1| predicted protein [Populus trichocarpa] gi|222868340|gb|EEF05471.1| predicted protein [Populus trichocarpa]

 Score =  275 bits (704), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 130/154 (84%), Positives = 144/154 (93%)

Query: 1   MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQV 60
           MVGFKNRYMV+EVFLDPN++L VDDP+I+TQ+NVSKAI+DSILVNFGECGLASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNRDLGVDDPIIITQYNVSKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEE 120
           KYVNPITKLCIIR SRE+ QKVWSA+TMVR IGNC VLFN+LDLSGSI+ACK AALKC+E
Sbjct: 61  KYVNPITKLCIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLSGSIKACKVAALKCDE 120

Query: 121 VKFEHYKLAVGARLSADVTQHMENCLEKIKILEH 154
           +KFEHYKLA GA LS DV QHM+NCLEKIKILEH
Sbjct: 121 MKFEHYKLAAGAPLSTDVNQHMQNCLEKIKILEH 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482082|gb|ABK92972.1| unknown [Populus trichocarpa]

 Score =  275 bits (702), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 129/154 (83%), Positives = 144/154 (93%)

Query: 1   MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQV 60
           MVGFKNRYMV+EVFLDPN++L VDDP+++TQ+NVSKAI+DSILVNFGECGLASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNRDLGVDDPIVITQYNVSKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEE 120
           KYVNPITKLCIIR SRE+ QKVWSA+TMVR IGNC VLFN+LDLSGSI+ACK AALKC+E
Sbjct: 61  KYVNPITKLCIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLSGSIKACKVAALKCDE 120

Query: 121 VKFEHYKLAVGARLSADVTQHMENCLEKIKILEH 154
           +KFEHYKLA GA LS DV QHM+NCLEKIKILEH
Sbjct: 121 MKFEHYKLAAGAPLSTDVNQHMQNCLEKIKILEH 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135587|ref|XP_002327255.1| predicted protein [Populus trichocarpa] gi|222835625|gb|EEE74060.1| predicted protein [Populus trichocarpa]

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 129/154 (83%), Positives = 143/154 (92%)

Query: 1   MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQV 60
           MVGFKNRYMV+EVFLDPN++L VDDP+I+TQ+NVSKAI+DSILVNFGECGLASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNRDLGVDDPIIITQYNVSKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEE 120
           KYVNPITKLCIIR SRE+ QKVWSA+TMVR IGNC VLFN+LDLSGSI+ACK AALKC+E
Sbjct: 61  KYVNPITKLCIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLSGSIKACKVAALKCDE 120

Query: 121 VKFEHYKLAVGARLSADVTQHMENCLEKIKILEH 154
           +KFEHYKLA GA LS DV QHM+NCLEKI ILEH
Sbjct: 121 MKFEHYKLAAGAPLSPDVNQHMQNCLEKINILEH 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132540|ref|XP_002321342.1| predicted protein [Populus trichocarpa] gi|222868338|gb|EEF05469.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (686), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 128/154 (83%), Positives = 142/154 (92%)

Query: 1   MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQV 60
           MVGFKNRYMV+EVFLDPN++L VDDP+I+TQ+NVSKAI+DSILVNF ECGLASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNRDLGVDDPIIITQYNVSKAIKDSILVNFRECGLASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEE 120
           KYVNPITKL IIR SRE+ QKVWSA+TMVR IGNC VLFN+LDLSG I+ACK AALKC+E
Sbjct: 61  KYVNPITKLYIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLSGDIKACKVAALKCDE 120

Query: 121 VKFEHYKLAVGARLSADVTQHMENCLEKIKILEH 154
           +KFEHYKLA GA LSADV QHM+NCLEKIKILEH
Sbjct: 121 MKFEHYKLAAGAPLSADVNQHMQNCLEKIKILEH 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455163|ref|XP_002268478.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Vitis vinifera] gi|302144009|emb|CBI23114.3| unnamed protein product [Vitis vinifera]

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 123/154 (79%), Positives = 142/154 (92%)

Query: 1   MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQV 60
           MVGFKNRYM++EVFLDPN++L VDDP+I+TQFNVSKAI+DSILVNFGECGLASS GSFQV
Sbjct: 1   MVGFKNRYMIMEVFLDPNRDLAVDDPIIITQFNVSKAIKDSILVNFGECGLASSFGSFQV 60

Query: 61  KYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEE 120
           KYVNPITKLCIIRASRE+ QKVWSA+TMV+SIG+C VLFN+LDLSGSIRAC+NAALKC++
Sbjct: 61  KYVNPITKLCIIRASREEYQKVWSAITMVKSIGHCPVLFNLLDLSGSIRACRNAALKCDK 120

Query: 121 VKFEHYKLAVGARLSADVTQHMENCLEKIKILEH 154
            KFE YKL VG RL+ D+   M+NCLE+IKILEH
Sbjct: 121 AKFEQYKLVVGDRLTDDINNQMQNCLERIKILEH 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544312|ref|XP_002513218.1| lipoate-protein ligase B, putative [Ricinus communis] gi|223547716|gb|EEF49209.1| lipoate-protein ligase B, putative [Ricinus communis]

 Score =  251 bits (641), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 119/144 (82%), Positives = 134/144 (93%)

Query: 11  VEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLC 70
           +E+FLDPN++L  DDP+I+TQFNVSKAI++SILVN+GECGLASSLGSFQVKYVNPITKLC
Sbjct: 1   MEIFLDPNRDLNTDDPIIITQFNVSKAIKESILVNYGECGLASSLGSFQVKYVNPITKLC 60

Query: 71  IIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEEVKFEHYKLAV 130
           IIRASRE+ QKVWSA+TMVRSIGNC VLFN+LDLSGSIRACK AALKC+E KFE +KLAV
Sbjct: 61  IIRASREEYQKVWSAVTMVRSIGNCPVLFNLLDLSGSIRACKRAALKCDEAKFEQHKLAV 120

Query: 131 GARLSADVTQHMENCLEKIKILEH 154
           G  LSADVT HM+NCLEKIKILEH
Sbjct: 121 GDHLSADVTLHMQNCLEKIKILEH 144

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500813|ref|XP_003519225.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5-like [Glycine max]

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 117/154 (75%), Positives = 134/154 (87%)

Query: 1   MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQV 60
           MVGF+NRYMV+EVFL+PN++   DD VI+TQFNVSKA+RDSILVNFGECGLASSLGSFQV
Sbjct: 1   MVGFRNRYMVMEVFLNPNRDKGGDDSVIVTQFNVSKAVRDSILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEE 120
           KYVNPIT +CIIRASRE  QKVWSA+TMV +IGNC V+FN+LDLSGSIRACKNAALKCEE
Sbjct: 61  KYVNPITNVCIIRASREQYQKVWSAITMVTNIGNCPVMFNLLDLSGSIRACKNAALKCEE 120

Query: 121 VKFEHYKLAVGARLSADVTQHMENCLEKIKILEH 154
            KFE YKL +G R S+D T  M   L++IK+LEH
Sbjct: 121 SKFEQYKLMLGDRFSSDHTHRMNTYLDRIKVLEH 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727563|ref|NP_001237165.1| uncharacterized protein LOC100527772 [Glycine max] gi|255633176|gb|ACU16944.1| unknown [Glycine max]

 Score =  244 bits (624), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 116/154 (75%), Positives = 134/154 (87%)

Query: 1   MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQV 60
           MVGF+NRYMV+EVFL+PN++   D  VI+TQFNVSKA+RDSILVNFGECGLASSLGSFQV
Sbjct: 1   MVGFRNRYMVMEVFLNPNRDKVGDASVIITQFNVSKAVRDSILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEE 120
           KYVNPIT +CIIRASRE+ QKVW+A+TMV +IGNC V+FN+LDLSGSIRACKNAALKCEE
Sbjct: 61  KYVNPITNVCIIRASREEYQKVWAAITMVTNIGNCPVMFNLLDLSGSIRACKNAALKCEE 120

Query: 121 VKFEHYKLAVGARLSADVTQHMENCLEKIKILEH 154
            KFE YKL +G R SAD T  M   L++IK+LEH
Sbjct: 121 SKFEQYKLMLGDRFSADHTHRMNTYLDRIKVLEH 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443879|ref|XP_004139703.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5-like [Cucumis sativus] gi|449517176|ref|XP_004165622.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5-like [Cucumis sativus]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/154 (72%), Positives = 129/154 (83%)

Query: 1   MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQV 60
           MV FKNRYMV EV LDPNK+L  DDP+I+TQ+NVSKAI+DSIL+NFGECG AS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEE 120
           KYVNPITK+CIIRASRED Q VW+A+TMVRSI NC V+FN+LDLSG+ RACKN AL+ E 
Sbjct: 61  KYVNPITKVCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLEG 120

Query: 121 VKFEHYKLAVGARLSADVTQHMENCLEKIKILEH 154
           +KFE YKL VG  L  +V   M+NCLEKI  LE+
Sbjct: 121 LKFEQYKLMVGHYLPDNVNLQMQNCLEKIATLEN 154

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490389|ref|XP_003615482.1| hypothetical protein MTR_5g068650 [Medicago truncatula] gi|355516817|gb|AES98440.1| hypothetical protein MTR_5g068650 [Medicago truncatula]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 129/151 (85%)

Query: 4   FKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYV 63
           FKNRYMV+EVF++PNK+    D +I+TQFNVS AI+DSILVNFGECGLA+SLGSFQVKYV
Sbjct: 3   FKNRYMVMEVFMNPNKDQAAGDSIIITQFNVSNAIKDSILVNFGECGLAASLGSFQVKYV 62

Query: 64  NPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEEVKF 123
           NPIT +CIIRASRE+ +KVW+++TMVRSIGN  V+FN+LDLSG+++A K AALKCEE KF
Sbjct: 63  NPITNVCIIRASREEYEKVWASITMVRSIGNFPVVFNLLDLSGNLQATKTAALKCEEAKF 122

Query: 124 EHYKLAVGARLSADVTQHMENCLEKIKILEH 154
           E +KL VG RLSA+ T  M N L KI++LEH
Sbjct: 123 EQFKLMVGDRLSAEDTHRMNNHLAKIEVLEH 153

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
TAIR|locus:504956160	151	EMB1687 "AT1G04635" [Arabidops	0.974	0.993	0.645	8.5e-49
POMBASE|SPCC830.09c	139	SPCC830.09c "RNase P and RNase	0.824	0.913	0.323	1e-13
DICTYBASE|DDB_G0291662	171	pop5 "RNase MRP protein subuni	0.720	0.649	0.330	1.7e-11
UNIPROTKB|Q969H6	163	POP5 "Ribonuclease P/MRP prote	0.668	0.631	0.358	9.4e-11
UNIPROTKB|G1K1B6	170	POP5 "Ribonuclease P/MRP prote	0.668	0.605	0.35	5.2e-10
UNIPROTKB|Q1JQ92	170	POP5 "Ribonuclease P/MRP prote	0.668	0.605	0.35	5.2e-10
RGD|1311819	169	Pop5 "processing of precursor	0.688	0.627	0.333	5.2e-10
UNIPROTKB|F1RJI5	167	POP5 "Uncharacterized protein"	0.675	0.622	0.338	4.7e-09
UNIPROTKB|I3LKB0	172	POP5 "Uncharacterized protein"	0.675	0.604	0.338	4.7e-09
MGI|MGI:2151221	169	Pop5 "processing of precursor	0.675	0.615	0.327	5.9e-09

TAIR|locus:504956160 EMB1687 "AT1G04635" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 100/155 (64%), Positives = 128/155 (82%)

Query:     1 MVGFKNRYMVVEVFLDPNKELPVDD-PVILTQFNVSKAIRDSILVNFGECGLASSLGSFQ 59
             MVGFKNRYM++EVFLDP+K+L  +  P+ILTQFN+SKAI+DSILVNFGECGL SSLGSFQ
Sbjct:     1 MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query:    60 VKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCE 119
             VKYVNPITKLCI+R+SRE+ ++VW A+T+V+SIGNC V+ N+LD+SG IRAC++ ALKC+
Sbjct:    61 VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query:   120 EVKFEHYKLAVGARLSADVTQHMENCLEKIKILEH 154
             + KFE    +    LS +  + M   LEKIK+LE+
Sbjct:   121 KEKFEQCSKS----LSEEEIRQMNTSLEKIKLLEN 151

GO:0004526 "ribonuclease P activity" evidence=ISS

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008033 "tRNA processing" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0005773 "vacuole" evidence=IDA

POMBASE|SPCC830.09c SPCC830.09c "RNase P and RNase MRP subunit (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 43/133 (32%), Positives = 72/133 (54%)

Query:     1 MVGFKNRYMVVEVFLDPNKELPVDDPVI-----LTQFNVSKAIRDSILVNFGECGLASSL 55
             MV FK+RY++ EV     KE   D P I     +T  ++SK IR  +  NFG+ G+    
Sbjct:     1 MVRFKSRYLLFEVLYPEAKEF-FDYPTIPSDSSITTSSLSKIIRTMVAENFGDVGIGKVA 59

Query:    56 GSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAA 115
              S  VKY +P T   I+R SR+  +  W+A+ ++R +    V+  V+ +SG+I+  + AA
Sbjct:    60 SSLTVKYFSPNTSTGILRVSRQHFRLAWAALVLIRELYGKPVIIRVVRVSGTIKKAELAA 119

Query:   116 LKCEEVKFEHYKL 128
             ++  + +  +  L
Sbjct:   120 IERNKSEIHNISL 132

GO:0000172 "ribonuclease MRP complex" evidence=ISO

GO:0005655 "nucleolar ribonuclease P complex" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0008033 "tRNA processing" evidence=ISO

GO:0000171 "ribonuclease MRP activity" evidence=ISO

GO:0004526 "ribonuclease P activity" evidence=ISO

DICTYBASE|DDB_G0291662 pop5 "RNase MRP protein subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 39/118 (33%), Positives = 65/118 (55%)

Query:     1 MVGFKNRYMVVEVFLDPN-KELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQ 59
             MV  KNRY++ EV    N K   + D  +  QF +S  +++ +    GE    +   + +
Sbjct:     1 MVRLKNRYLMTEVIWHDNEKSTQLSDSWLF-QF-ISNEVKEKL----GELTYEAFKKTLK 54

Query:    60 VKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALK 117
             + YVNP T + IIR S E  + +W+A+T++ S     + F ++ + GSIR C+ AA+K
Sbjct:    55 IIYVNPDTNIFIIRVSFEYYKSLWTALTLITSYYGVPIYFRMVHVGGSIRLCQKAAIK 112

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA;IC

GO:0005634 "nucleus" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=IEA;ISS

GO:0000171 "ribonuclease MRP activity" evidence=ISS

GO:0006364 "rRNA processing" evidence=IC

GO:0005655 "nucleolar ribonuclease P complex" evidence=ISS

GO:0000172 "ribonuclease MRP complex" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q969H6 POP5 "Ribonuclease P/MRP protein subunit POP5" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 43/120 (35%), Positives = 65/120 (54%)

Query:     1 MVGFKNRYMVVEVFLD-PNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLAS-SLGSF 58
             MV FK+RY++ E+  D P   L +DD V+      S  +RD+I    G  G A+ S+G F
Sbjct:     1 MVRFKHRYLLCELVSDDPRCRLSLDDRVL------SSLVRDTIARVHGTFGAAACSIG-F 53

Query:    59 QVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGN------CLVLFNVLDLSGSIRACK 112
              V+Y+N  T + ++R  +E  Q VWSA+  +  + N      C   FN L + G+IR C+
Sbjct:    54 AVRYLNAYTGIVLLRCRKEFYQLVWSALPFITYLENKGHRYPCF--FNTLHVGGTIRTCQ 111

GO:0004526 "ribonuclease P activity" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|G1K1B6 POP5 "Ribonuclease P/MRP protein subunit POP5" [Bos taurus (taxid:9913)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 42/120 (35%), Positives = 66/120 (55%)

Query:     1 MVGFKNRYMVVEVFLD-PNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLAS-SLGSF 58
             MV FK+RY++ EV  D P   L ++D V+ T       +RD+I    G  G A+ S+G F
Sbjct:     1 MVRFKHRYLLCEVVSDDPRCRLTLEDRVLGT------LVRDTIARVHGTFGAAACSIG-F 53

Query:    59 QVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGN------CLVLFNVLDLSGSIRACK 112
              V+Y+N  T + ++R  +E  + VWSA+  + S+ N      C +  N L + G+IR C+
Sbjct:    54 AVRYLNAYTGIVLLRCRKEFYRLVWSALPFITSLENKGHRYPCFL--NTLHVGGTIRTCQ 111

GO:0008033 "tRNA processing" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=IEA

UNIPROTKB|Q1JQ92 POP5 "Ribonuclease P/MRP protein subunit POP5" [Bos taurus (taxid:9913)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 42/120 (35%), Positives = 66/120 (55%)

Query:     1 MVGFKNRYMVVEVFLD-PNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLAS-SLGSF 58
             MV FK+RY++ EV  D P   L ++D V+ T       +RD+I    G  G A+ S+G F
Sbjct:     1 MVRFKHRYLLCEVVSDDPRCRLTLEDRVLGT------LVRDTIARVHGTFGAAACSIG-F 53

Query:    59 QVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGN------CLVLFNVLDLSGSIRACK 112
              V+Y+N  T + ++R  +E  + VWSA+  + S+ N      C +  N L + G+IR C+
Sbjct:    54 AVRYLNAYTGIVLLRCRKEFYRLVWSALPFITSLENKGHRYPCFL--NTLHVGGTIRTCQ 111

GO:0005730 "nucleolus" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

RGD|1311819 Pop5 "processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 39/117 (33%), Positives = 60/117 (51%)

Query:     1 MVGFKNRYMVVE-VFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQ 59
             MV FK+RY++ E V  DP   L +DD V+         +RD+I    G  G A+    F 
Sbjct:     1 MVRFKHRYLLCELVSEDPRCRLSLDDRVL------GGLVRDTIARVHGAFGAAACSVGFA 54

Query:    60 VKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGN----CLVLFNVLDLSGSIRACK 112
             V+Y+N  T + ++R  ++  Q VWSA+  +  + N        FN L + G+IR C+
Sbjct:    55 VRYLNAYTGVVLLRCRKDFYQLVWSALPFITCLENKGHRYSCFFNTLHVGGTIRTCQ 111

GO:0004526 "ribonuclease P activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=ISO

GO:0008033 "tRNA processing" evidence=IEA;ISO

UNIPROTKB|F1RJI5 POP5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 41/121 (33%), Positives = 64/121 (52%)

Query:     1 MVGFKNRYMVVEVFL-DPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLA-SSLG-S 57
             MV FK+RY++ EV   DP   L ++D V+         +RD+I    G  G A SS+G +
Sbjct:     1 MVRFKHRYLLCEVVSEDPRCRLNLEDRVL------GGLVRDTIARVHGTFGAAASSIGFA 54

Query:    58 FQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGN------CLVLFNVLDLSGSIRAC 111
               V+Y+N  T + ++R  +E  + VWSA+  +  + N      C   FN L + G+IR C
Sbjct:    55 AAVRYLNAYTGIVLLRCRKEFYRLVWSALPFITYLENKGHRYPCF--FNTLHVGGTIRTC 112

Query:   112 K 112
             +
Sbjct:   113 Q 113

GO:0008033 "tRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=IEA

UNIPROTKB|I3LKB0 POP5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 41/121 (33%), Positives = 64/121 (52%)

Query:     1 MVGFKNRYMVVEVFL-DPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLA-SSLG-S 57
             MV FK+RY++ EV   DP   L ++D V+         +RD+I    G  G A SS+G +
Sbjct:     1 MVRFKHRYLLCEVVSEDPRCRLNLEDRVL------GGLVRDTIARVHGTFGAAASSIGFA 54

Query:    58 FQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGN------CLVLFNVLDLSGSIRAC 111
               V+Y+N  T + ++R  +E  + VWSA+  +  + N      C   FN L + G+IR C
Sbjct:    55 AAVRYLNAYTGIVLLRCRKEFYRLVWSALPFITYLENKGHRYPCF--FNTLHVGGTIRTC 112

Query:   112 K 112
             +
Sbjct:   113 Q 113

GO:0008033 "tRNA processing" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=IEA

MGI|MGI:2151221 Pop5 "processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 39/119 (32%), Positives = 60/119 (50%)

Query:     1 MVGFKNRYMVVE-VFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQ 59
             MV FK+RY++ E V  D    L +DD V+         +RD+I    G  G A+    F 
Sbjct:     1 MVRFKHRYLLCELVSEDARCRLSLDDRVL------GGLVRDTIARVHGAFGAAACSVGFA 54

Query:    60 VKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGN------CLVLFNVLDLSGSIRACK 112
             V+Y+N  T + ++R  ++  Q VWSA+  +  + N      C   FN L + G+IR C+
Sbjct:    55 VRYLNAYTGVVLLRCRKDFYQLVWSALPFITYLENKGHRYPCF--FNTLHVGGTIRTCQ 111

GO:0000171 "ribonuclease MRP activity" evidence=ISA

GO:0000172 "ribonuclease MRP complex" evidence=ISA

GO:0004526 "ribonuclease P activity" evidence=IDA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISA

GO:0008033 "tRNA processing" evidence=IDA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6AWV1	POP5_ARATH	3, ., 1, ., 2, 6, ., 5	0.6451	0.9740	0.9933	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.26	0.691
3rd Layer	3.1.26.5	0.737

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	154
pfam01900	103	pfam01900, RNase_P_Rpp14, Rpp14/Pop5 family	5e-34
COG1369	124	COG1369, POP5, RNase P/RNase MRP subunit POP5 [Tra	3e-14
PRK03717	120	PRK03717, PRK03717, ribonuclease P protein compone	1e-05

>gnl|CDD|216773 pfam01900, RNase_P_Rpp14, Rpp14/Pop5 family

 Score =  114 bits (288), Expect = 5e-34
 Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 8/111 (7%)

Query: 7   RYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPI 66
           RY++ E+  +        DP  L++ ++ KAIR+++   FG+ G A +  S  VKY NP 
Sbjct: 1   RYILFEIISE--------DPSSLSRKDLLKAIREAVKELFGDFGAAKAGPSLIVKYFNPK 52

Query: 67  TKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALK 117
           T   I+R  R   + VW+A+T++ SIG   V+  VL +SG+I+ C+   ++
Sbjct: 53  TGTGILRCRRGYVRLVWAALTLITSIGGKPVIIRVLGVSGTIKKCEEKLIR 103

tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule associated with at least eight protein subunits, hPop1, Rpp14, Rpp20, Rpp25, Rpp29, Rpp30, Rpp38, and Rpp40. This protein is known as Pop5 in eukaryotes. Length = 103

>gnl|CDD|224288 COG1369, POP5, RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]

 Score = 64.7 bits (158), Expect = 3e-14
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 12/113 (10%)

Query: 5   KNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVN 64
           + RY+  EV     +E+   +        + + IR S+L   G+ G A +       Y  
Sbjct: 15  RKRYIAFEVI--SEEEITRGE--------LVRLIRRSLLSLLGDVGTAKANPRLVKYY-- 62

Query: 65  PITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALK 117
             T   I+R  RE    V +A+ + R +    V+  VL +SG+I+  K   L+
Sbjct: 63  FSTGTGIVRCRREYVDLVRAALMLAREVNGKRVIIVVLGVSGTIKKAKRKFLR 115

Length = 124

>gnl|CDD|167589 PRK03717, PRK03717, ribonuclease P protein component 2; Provisional

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 12/113 (10%)

Query: 5   KNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVN 64
           KNRY+  +V          + P   T+  + KAI ++ L   GE G A +   F +K+ +
Sbjct: 15  KNRYIAFQVI--------GERP--FTKDEIKKAIWEASLSTLGELGTARAKPWF-IKF-D 62

Query: 65  PITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALK 117
             T+  I+R  R+  +++  A+T+V  I     +   L +SG+I+  K   L 
Sbjct: 63  EKTQTGIVRCDRKHVEELRFALTLVTEINGSKAIIRTLGVSGTIKRLKRKFLS 115

Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
KOG4639	154	consensus RNase P/RNase MRP subunit POP5 [Translat	100.0
PRK03717	120	ribonuclease P protein component 2; Provisional	100.0
PF01900	107	RNase_P_Rpp14: Rpp14/Pop5 family; InterPro: IPR002	100.0
COG1369	124	POP5 RNase P/RNase MRP subunit POP5 [Translation,	99.95

>KOG4639 consensus RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.8e-41  Score=253.23  Aligned_cols=145  Identities=28%  Similarity=0.521  Sum_probs=136.1

Q ss_pred             CCcccceEEEEEEEeCCCCCCCCCCccccCHHHHHHHHHHHHHhhcCccccccccCceeEEEEcCCCceEEEEeCCCchH
Q 031717            1 MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQ   80 (154)
Q Consensus         1 MVR~K~RYi~~ei~~~~~~~~~~~~~~~l~~~~l~~~I~~sv~~lfGd~G~~~~~~~l~Vky~~~~t~~~IIR~~r~~~~   80 (154)
                      |||+|||||+||+.++++.     .+..++...|.+.+++.+.++|||+|+|.+..+|.|+|+|+.|+.+||||.+++++
T Consensus         1 MVRiK~RYilvel~~~~p~-----~~~~~~~siL~~iir~~v~~~~Gd~G~a~~~s~l~VkYl~~~T~v~ilRc~~~~~k   75 (154)
T KOG4639|consen    1 MVRIKNRYILVELLFPDPP-----PDLSLKDSILQSIIRSRVSENYGDFGLAKVKSLLSVKYLNENTSVAILRCAREGCK   75 (154)
T ss_pred             CceeeeeEEEEEEecCCCC-----CCCCcchHHHHHHHHHHHHHHhhhHHHHHhhcceEEEEeCCCCcEEEEEEccccch
Confidence            9999999999999998764     23456778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhCCeeEEEEEEeeechHHHHHHHHHcchHHHHHHHHHHHccCCCHHHHHHHHHHHHHhhhcc
Q 031717           81 KVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEEVKFEHYKLAVGARLSADVTQHMENCLEKIKILE  153 (154)
Q Consensus        81 ~v~aaL~li~~i~~~~~~~~Vl~VSGTIr~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (154)
                      .+|+|||+|++++|.||.|+|++|||||++|++++++++++.+...   +|++.+++++++.++.++.+...+
T Consensus        76 ~v~~aLplI~~i~d~~~~~~tl~Vggtik~cekfiik~nr~el~~~---l~~~t~~~~r~~~~~~v~~~~~~~  145 (154)
T KOG4639|consen   76 LVWAALPLITKIGDVPCIFRTLFVGGTIKKCEKFIIKYNRSELHRI---LGKCTSTEERDQLFEAVHQICGQR  145 (154)
T ss_pred             hHHHHHhHHHhhcCcceEEEEEEEhhhHHHHHHHHHHHhHHHHHHH---HhhcCchhhhhhHHHHHHHHhcch
Confidence            9999999999999999999999999999999999999999999888   999999999999999999887654

>PRK03717 ribonuclease P protein component 2; Provisional

Probab=100.00  E-value=1.3e-34  Score=212.53  Aligned_cols=104  Identities=27%  Similarity=0.371  Sum_probs=96.6

Q ss_pred             CcccceEEEEEEEeCCCCCCCCCCccccCHHHHHHHHHHHHHhhcCccccccccCceeEEEEcCCCceEEEEeCCCchHH
Q 031717            2 VGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQK   81 (154)
Q Consensus         2 VR~K~RYi~~ei~~~~~~~~~~~~~~~l~~~~l~~~I~~sv~~lfGd~G~~~~~~~l~Vky~~~~t~~~IIR~~r~~~~~   81 (154)
                      ||+|||||+|||+++++          +++.+|.++||+++.++|||+|+|.+..  .++|||+.|+.|||||+|++++.
T Consensus        12 lR~K~RYi~~ei~~~~~----------~~~~~l~~~Ir~av~~~fGd~G~~~~~~--~li~f~~~t~~gIlRc~R~~~~~   79 (120)
T PRK03717         12 LRDKNRYIAFQVIGERP----------FTKDEIKKAIWEASLSTLGELGTARAKP--WFIKFDEKTQTGIVRCDRKHVEE   79 (120)
T ss_pred             ccccceEEEEEEEeCCC----------CCHHHHHHHHHHHHHHHcChhhhccccc--eEEEEeCCCCEEEEEcCchhHHH
Confidence            79999999999998753          4788999999999999999999998643  45699999999999999999999


Q ss_pred             HHHHHHhhhhhCCeeEEEEEEeeechHHHHHHHHHc
Q 031717           82 VWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALK  117 (154)
Q Consensus        82 v~aaL~li~~i~~~~~~~~Vl~VSGTIr~~~k~~l~  117 (154)
                      +|+||+++++++|.||.|+|++||||||+|+++++.
T Consensus        80 v~aAL~li~~i~~~~v~ir~l~vSGTIk~~~~k~l~  115 (120)
T PRK03717         80 LRFALTLVTEINGSKAIIRTLGVSGTIKRLKRKFLS  115 (120)
T ss_pred             HHHHHHHHHhCCCeeEEEEEeeccHHHHHHHHHhhh
Confidence            999999999999999999999999999999999885

>PF01900 RNase_P_Rpp14: Rpp14/Pop5 family; InterPro: IPR002759 This family contains proteins found in some eukaryotes and archaebacteria that are related to yeast ribonuclease P

Probab=100.00  E-value=1.5e-34  Score=206.79  Aligned_cols=107  Identities=41%  Similarity=0.658  Sum_probs=90.3

Q ss_pred             eEEEEEEEeCCCCCCCCCCccccCHHHHHHHHHHHHHhhcCccccccccCceeEEEEcCCCceEEEEeCCCchHHHHHHH
Q 031717            7 RYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAM   86 (154)
Q Consensus         7 RYi~~ei~~~~~~~~~~~~~~~l~~~~l~~~I~~sv~~lfGd~G~~~~~~~l~Vky~~~~t~~~IIR~~r~~~~~v~aaL   86 (154)
                      |||+|++.++++.     ++..+++.+|.++|++++.++|||+|+|.+.+++.|+|||+.|+.|||||+|++++.+|+||
T Consensus         1 RYi~~~i~~~~~~-----~~~~~~~~~l~~~I~~a~~~l~G~~G~~~~~~~l~v~~~~~~t~~~IiR~~r~~~~~v~~aL   75 (107)
T PF01900_consen    1 RYIVFEIISEDPS-----DPAELSPSDLKKAIREAVKELFGDFGAAAISPSLQVKYFNPKTGIGIIRCRREYYKKVWSAL   75 (107)
T ss_dssp             EEEEEEEEES----------S---HHHHHHHHHHHHHHHCHHHHHHHH--EEE--EEETTTTEEEEEEEGGGHHHHHHHH
T ss_pred             CEEEEEEEEcccc-----ccCcCCHHHHHHHHHHHHHHHcChhhhhhcccccceeeEcCCCCEEEEEEcchhhhHHHHHH
Confidence            9999999999874     23458999999999999999999999999889999999999999999999999999999999


Q ss_pred             HhhhhhCCeeEEEEEEeeechHHHHHHHHHcc
Q 031717           87 TMVRSIGNCLVLFNVLDLSGSIRACKNAALKC  118 (154)
Q Consensus        87 ~li~~i~~~~~~~~Vl~VSGTIr~~~k~~l~~  118 (154)
                      |++++++|.||.|+|++|||||++|++++++|
T Consensus        76 ~~i~~i~~~~~~~~vl~vSGTir~~~k~~i~~  107 (107)
T PF01900_consen   76 TLITSINGRPCSIRVLHVSGTIRSCQKFIIKY  107 (107)
T ss_dssp             HT--EETTEEEEEEEEEEESSHHHHHHHCTC-
T ss_pred             HHHhccCCceEEEEEEEEChhHHHHHHHHhcC
Confidence            99999999999999999999999999999986

This enzyme is essential for tRNA processing generating 5'-termini of mature tRNA molecules []. tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule associated with at least eight protein subunits, hPop1, Rpp14, Rpp20, Rpp25, Rpp29, Rpp30, Rpp38, and Rpp40 [].; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 2CZV_D 2AV5_B.

>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=4.2e-28  Score=177.37  Aligned_cols=107  Identities=27%  Similarity=0.375  Sum_probs=95.7

Q ss_pred             CcccceEEEEEEEeCCCCCCCCCCccccCHHHHHHHHHHHHHhhcCccccccccCceeEEEEcCCCceEEEEeCCCchHH
Q 031717            2 VGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQK   81 (154)
Q Consensus         2 VR~K~RYi~~ei~~~~~~~~~~~~~~~l~~~~l~~~I~~sv~~lfGd~G~~~~~~~l~Vky~~~~t~~~IIR~~r~~~~~   81 (154)
                      +|.++|||+|+++++++          ++..++.++||+++.++|||+|.|.+ +++.+ +|++.|++|||||.|++++.
T Consensus        12 lr~~kRYiaf~vise~~----------i~~~~l~~~I~~s~l~llG~~gta~~-~~~lv-~~~~~t~~GIvrc~R~~~~~   79 (124)
T COG1369          12 LRPRKRYIAFEVISEEE----------ITRGELVRLIRRSLLSLLGDVGTAKA-NPRLV-KYYFSTGTGIVRCRREYVDL   79 (124)
T ss_pred             cCccceEEEEEEecccc----------CChhHHHHHHHHHHHHHcCccccccc-ceeEE-EEeccCCceEEEEechhHHH
Confidence            68999999999998844          46789999999999999999999985 44444 44666999999999999999


Q ss_pred             HHHHHHhhhhhCCeeEEEEEEeeechHHHHHHHHHcchH
Q 031717           82 VWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEE  120 (154)
Q Consensus        82 v~aaL~li~~i~~~~~~~~Vl~VSGTIr~~~k~~l~~~~  120 (154)
                      +++||+++++++|.|+.++|++||||||+|+++++..+.
T Consensus        80 v~aAL~l~~~~~g~rv~I~~lgvSGTIKka~~~~l~~~~  118 (124)
T COG1369          80 VRAALMLAREVNGKRVIIVVLGVSGTIKKAKRKFLRRNK  118 (124)
T ss_pred             HHHHHHHHHHhCCceEEEEEeeccccHHHHHHHHhccCC
Confidence            999999999999999999999999999999999987643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	154
2av5_A	120	Ribonuclease P protein component 2; hydrolase; 3.1	1e-32
2czv_C	120	Ribonuclease P protein component 2; RNA binding pr	5e-32

>2av5_A Ribonuclease P protein component 2; hydrolase; 3.15A {Pyrococcus furiosus} SCOP: d.58.59.1 Length = 120

 Score =  111 bits (279), Expect = 1e-32
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 12/114 (10%)

Query: 4   FKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYV 63
            K RY+  +V  +              +  + +AI ++ L   GE G A +     +   
Sbjct: 14  DKKRYIAFKVISENQ----------FNKDEIKEAIWNACLRTLGELGTAKA--KPWLIKF 61

Query: 64  NPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALK 117
           +  T+  IIR+ R     V  ++T+V  I     +  VL +SG+I+  K   L 
Sbjct: 62  DETTQTGIIRSDRNHVYDVIFSLTLVSDINGNKAIIKVLGVSGTIKRLKRKFLS 115

>2czv_C Ribonuclease P protein component 2; RNA binding protein, RNA recognition motif, protein-protein complex, hydrolase; HET: BOG; 2.00A {Pyrococcus horikoshii} SCOP: d.58.59.1 Length = 120

 Score =  109 bits (274), Expect = 5e-32
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 12/114 (10%)

Query: 4   FKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYV 63
            KNRY+  E+  D +           T+  V + I  S L   GE G A       +   
Sbjct: 14  DKNRYIAFEIISDGD----------FTKDEVKELIWKSSLEVLGETGTAIV--KPWLIKF 61

Query: 64  NPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALK 117
           +P TK  I+R+ RE  + +  A+ +V       ++   L +SG+I+  K   L 
Sbjct: 62  DPNTKTGIVRSDREYVEYLRFALMLVSEFNGKRLIIRTLGVSGTIKRLKRKFLA 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	154
2av5_A	120	Ribonuclease P protein component 2; hydrolase; 3.1	100.0
2czv_C	120	Ribonuclease P protein component 2; RNA binding pr	100.0

>2av5_A Ribonuclease P protein component 2; hydrolase; 3.15A {Pyrococcus furiosus} SCOP: d.58.59.1

Probab=100.00  E-value=1.3e-37  Score=227.24  Aligned_cols=106  Identities=25%  Similarity=0.344  Sum_probs=96.2

Q ss_pred             CCcccceEEEEEEEeCCCCCCCCCCccccCHHHHHHHHHHHHHhhcCccccccccCceeEEEEcCCCceEEEEeCCCchH
Q 031717            1 MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQ   80 (154)
Q Consensus         1 MVR~K~RYi~~ei~~~~~~~~~~~~~~~l~~~~l~~~I~~sv~~lfGd~G~~~~~~~l~Vky~~~~t~~~IIR~~r~~~~   80 (154)
                      |||+|||||+|||+++++          +++++|.++|+++++++|||+|+|.+.  +.|+|||+.|++|||||+|++++
T Consensus        11 ~vR~K~RYll~ei~~~~~----------l~~~~l~~~I~~av~~~fGd~G~~~~~--~~v~~f~~~t~~~IiRc~r~~~~   78 (120)
T 2av5_A           11 TLRDKKRYIAFKVISENQ----------FNKDEIKEAIWNACLRTLGELGTAKAK--PWLIKFDETTQTGIIRSDRNHVY   78 (120)
T ss_dssp             ----CEEEEEEEEEESSC----------CCHHHHHHHHHHHHHHHHHHHHHHHHC--CEEEEEETTTTEEEEEEEGGGHH
T ss_pred             cccccceEEEEEEEECCC----------CCHHHHHHHHHHHHHHhCCcccccccC--ccEEEEcCCCCEEEEEeCchhHH
Confidence            899999999999999864          588999999999999999999999853  67899999999999999999999


Q ss_pred             HHHHHHHhhhhhCCeeEEEEEEeeechHHHHHHHHHcc
Q 031717           81 KVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKC  118 (154)
Q Consensus        81 ~v~aaL~li~~i~~~~~~~~Vl~VSGTIr~~~k~~l~~  118 (154)
                      .+|+|||++++++|.||.|+|+||||||++|++++++.
T Consensus        79 ~v~aaLtli~~i~~~~~~~~vl~vSGTIr~~~~k~l~~  116 (120)
T 2av5_A           79 DVIFSLTLVSDINGNKAIIKVLGVSGTIKRLKRKFLSQ  116 (120)
T ss_dssp             HHHHHHHTCCEETTEEEEEEEEEEESSHHHHHHHTTTT
T ss_pred             HHHHHHHHHhhCCCEEEEEEEeEEchhHHHHHHHHHhh
Confidence            99999999999999999999999999999999888764

>2czv_C Ribonuclease P protein component 2; RNA binding protein, RNA recognition motif, protein-protein complex, hydrolase; HET: BOG; 2.00A {Pyrococcus horikoshii} SCOP: d.58.59.1

Probab=100.00  E-value=1.9e-37  Score=226.39  Aligned_cols=106  Identities=28%  Similarity=0.338  Sum_probs=100.1

Q ss_pred             CCcccceEEEEEEEeCCCCCCCCCCccccCHHHHHHHHHHHHHhhcCccccccccCceeEEEEcCCCceEEEEeCCCchH
Q 031717            1 MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQ   80 (154)
Q Consensus         1 MVR~K~RYi~~ei~~~~~~~~~~~~~~~l~~~~l~~~I~~sv~~lfGd~G~~~~~~~l~Vky~~~~t~~~IIR~~r~~~~   80 (154)
                      |||+|||||+|||+++++          +++++|.++|+++++++|||+|+|.+  ++.|+|||+.|++|||||+|++++
T Consensus        11 ~vR~K~RYll~ei~~~~~----------l~~~~l~~~I~~av~~~fGd~G~~~~--~~~v~~f~~~t~~~IiRc~r~~~~   78 (120)
T 2czv_C           11 TLRDKNRYIAFEIISDGD----------FTKDEVKELIWKSSLEVLGETGTAIV--KPWLIKFDPNTKTGIVRSDREYVE   78 (120)
T ss_dssp             TTSCCEEEEEEEEECSSC----------CCHHHHHHHHHHHHHHHHHHHHHHHH--CCEEEEEETTTTEEEEEEEGGGHH
T ss_pred             ccccccEEEEEEEEECCC----------CCHHHHHHHHHHHHHHhcCcchhhcc--CceEEEEcCCCCEEEEEeCchhHH
Confidence            799999999999998863          58899999999999999999999986  478999999999999999999999


Q ss_pred             HHHHHHHhhhhhCCeeEEEEEEeeechHHHHHHHHHcc
Q 031717           81 KVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKC  118 (154)
Q Consensus        81 ~v~aaL~li~~i~~~~~~~~Vl~VSGTIr~~~k~~l~~  118 (154)
                      .+|+|||++++++|.||.|+|+||||||++|+++++..
T Consensus        79 ~v~aaLtli~~i~~~~~~~~vl~vSGTIr~~~~k~l~~  116 (120)
T 2czv_C           79 YLRFALMLVSEFNGKRLIIRTLGVSGTIKRLKRKFLAK  116 (120)
T ss_dssp             HHHHHHHTCCEETTEECEEEEEEEESSHHHHHHHHTGG
T ss_pred             HHHHHHHhHhhCCCEEEEEEEeEEChhHHHHHHHHHHH
Confidence            99999999999999999999999999999999888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	154
d2czvc1	118	d.58.59.1 (C:3-120) RNase P protein component 2, R	4e-33
d2av5a1	106	d.58.59.1 (A:15-120) RNase P protein component 2,	5e-33

>d2czvc1 d.58.59.1 (C:3-120) RNase P protein component 2, Rnp2 {Pyrococcus horikoshii [TaxId: 53953]} Length = 118

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Rnp2-like
family: Rpp14/Pop5-like
domain: RNase P protein component 2, Rnp2
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  111 bits (279), Expect = 4e-33
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 12/114 (10%)

Query: 4   FKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYV 63
            KNRY+  E+  D +           T+  V + I  S L   GE G A       +   
Sbjct: 12  DKNRYIAFEIISDGD----------FTKDEVKELIWKSSLEVLGETGTAIV--KPWLIKF 59

Query: 64  NPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALK 117
           +P TK  I+R+ RE  + +  A+ +V       ++   L +SG+I+  K   L 
Sbjct: 60  DPNTKTGIVRSDREYVEYLRFALMLVSEFNGKRLIIRTLGVSGTIKRLKRKFLA 113

>d2av5a1 d.58.59.1 (A:15-120) RNase P protein component 2, Rnp2 {Pyrococcus furiosus [TaxId: 2261]} Length = 106

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Rnp2-like
family: Rpp14/Pop5-like
domain: RNase P protein component 2, Rnp2
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  110 bits (277), Expect = 5e-33
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 12/113 (10%)

Query: 5   KNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVN 64
           K RY+  +V  +              +  + +AI ++ L   GE G A +     +   +
Sbjct: 1   KKRYIAFKVISENQ----------FNKDEIKEAIWNACLRTLGELGTAKA--KPWLIKFD 48

Query: 65  PITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALK 117
             T+  IIR+ R     V  ++T+V  I     +  VL +SG+I+  K   L 
Sbjct: 49  ETTQTGIIRSDRNHVYDVIFSLTLVSDINGNKAIIKVLGVSGTIKRLKRKFLS 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	154
d2czvc1	118	RNase P protein component 2, Rnp2 {Pyrococcus hori	100.0
d2av5a1	106	RNase P protein component 2, Rnp2 {Pyrococcus furi	100.0

>d2czvc1 d.58.59.1 (C:3-120) RNase P protein component 2, Rnp2 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Rnp2-like
family: Rpp14/Pop5-like
domain: RNase P protein component 2, Rnp2
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.8e-37  Score=224.08  Aligned_cols=107  Identities=28%  Similarity=0.326  Sum_probs=99.0

Q ss_pred             CCcccceEEEEEEEeCCCCCCCCCCccccCHHHHHHHHHHHHHhhcCccccccccCceeEEEEcCCCceEEEEeCCCchH
Q 031717            1 MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQ   80 (154)
Q Consensus         1 MVR~K~RYi~~ei~~~~~~~~~~~~~~~l~~~~l~~~I~~sv~~lfGd~G~~~~~~~l~Vky~~~~t~~~IIR~~r~~~~   80 (154)
                      ++|+|||||+|+|+++++          +++++|..+|++++.++|||+|+|.+  +++|+||||.|++|||||+|++++
T Consensus         9 ~lR~K~RYil~~i~~~~~----------~~~~~l~~~I~~~v~~lfGd~G~~~~--~~~v~y~~~~t~~~IiR~~r~~~~   76 (118)
T d2czvc1           9 TLRDKNRYIAFEIISDGD----------FTKDEVKELIWKSSLEVLGETGTAIV--KPWLIKFDPNTKTGIVRSDREYVE   76 (118)
T ss_dssp             TTSCCEEEEEEEEECSSC----------CCHHHHHHHHHHHHHHHHHHHHHHHH--CCEEEEEETTTTEEEEEEEGGGHH
T ss_pred             cccccceEEEEEEEeCCC----------CCHHHHHHHHHHHHHHhCCccceeee--ceeEEEEcCCCCEEEEEecchhHH
Confidence            689999999999987754          47889999999999999999999975  589999999999999999999999


Q ss_pred             HHHHHHHhhhhhCCeeEEEEEEeeechHHHHHHHHHcch
Q 031717           81 KVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCE  119 (154)
Q Consensus        81 ~v~aaL~li~~i~~~~~~~~Vl~VSGTIr~~~k~~l~~~  119 (154)
                      .+|+|||++++++|.||.|+|+||||||++|++++|+.+
T Consensus        77 ~v~aaL~li~~i~~~~~~i~vl~vSGTIk~~~~k~i~~~  115 (118)
T d2czvc1          77 YLRFALMLVSEFNGKRLIIRTLGVSGTIKRLKRKFLAKY  115 (118)
T ss_dssp             HHHHHHHTCCEETTEECEEEEEEEESSHHHHHHHHTGGG
T ss_pred             HHHHHHHHHhhcCCEeEEEEEEEecHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999987666554

>d2av5a1 d.58.59.1 (A:15-120) RNase P protein component 2, Rnp2 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Rnp2-like
family: Rpp14/Pop5-like
domain: RNase P protein component 2, Rnp2
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=4.6e-36  Score=212.98  Aligned_cols=103  Identities=26%  Similarity=0.362  Sum_probs=95.9

Q ss_pred             cceEEEEEEEeCCCCCCCCCCccccCHHHHHHHHHHHHHhhcCccccccccCceeEEEEcCCCceEEEEeCCCchHHHHH
Q 031717            5 KNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWS   84 (154)
Q Consensus         5 K~RYi~~ei~~~~~~~~~~~~~~~l~~~~l~~~I~~sv~~lfGd~G~~~~~~~l~Vky~~~~t~~~IIR~~r~~~~~v~a   84 (154)
                      ||||++|+|+++++          +++.+|.++|++++.++|||+|+|.+  ++.|+||||.|++|||||+|++++.+|+
T Consensus         1 K~RYi~~~i~~~~~----------l~~~~l~~~Ir~~v~~lfGd~G~~~~--~l~v~y~~~~t~~~IlR~~r~~~~~v~a   68 (106)
T d2av5a1           1 KKRYIAFKVISENQ----------FNKDEIKEAIWNACLRTLGELGTAKA--KPWLIKFDETTQTGIIRSDRNHVYDVIF   68 (106)
T ss_dssp             CEEEEEEEEEESSC----------CCHHHHHHHHHHHHHHHHHHHHHHHH--CCEEEEEETTTTEEEEEEEGGGHHHHHH
T ss_pred             CceEEEEEEEECCC----------CCHHHHHHHHHHHHHHhcChhhhccC--CceEEEEeCCCCEEEEEeccHhHHHHHH
Confidence            89999999998754          47899999999999999999999974  6899999999999999999999999999


Q ss_pred             HHHhhhhhCCeeEEEEEEeeechHHHHHHHHHcch
Q 031717           85 AMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCE  119 (154)
Q Consensus        85 aL~li~~i~~~~~~~~Vl~VSGTIr~~~k~~l~~~  119 (154)
                      |||++++++|.||.|+|+|||||||+|++++|+.+
T Consensus        69 aL~li~~i~~~~~~~~vl~vSGTik~~~~k~l~~~  103 (106)
T d2av5a1          69 SLTLVSDINGNKAIIKVLGVSGTIKRLKRKFLSQF  103 (106)
T ss_dssp             HHHTCCEETTEEEEEEEEEEESSHHHHHHHTTTTT
T ss_pred             HHHHHHhcCCEEEEEEEEEeeHHHHHHHHHHHHHh
Confidence            99999999999999999999999999987776653