Citrus Sinensis ID: 031720

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
MKIQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFIVTEEKAAEPATAAAGEETKPEQETTSSSTAAVTEKDDVVVEEEKKEEAPAGPEKTEPAEAAAAPAPTEPLPAAAKEDQPAAAEPPKP
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEcccccEEcccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccHHHHHHHHHHHHccccccHHHHHHHHccccccccccEEEEEEcccEEccccccccccccccccccccccccccccEEccEEEEEEEEEEccccccccccccccccccHccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MKIQTLVKdrkedglkkHSTAVHKLLEELVKiefpgskavseasskfgaasvpgpvfFIFEKVSTFIVTeekaaepataaageetkpeqettssstaavtekddvvveeekkeeapagpektepaeaaaapapteplpaaakedqpaaaeppkp
Flexible Loop (DISEMBL)
mkiqtlvkdrkedglkkhsTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFIVTEEKAAepataaageetkpeqettssstaavtekddvvVEEEkkeeapagpektepaEAAAAPAPTEPLPAAAKedqpaaaeppkp
Low Complexity Region (SEG)
MKIQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFIVteekaaepataaageetkpeQEttssstaavtekddvvveeekkeeapagpektepaeaaaapapteplpaaakedqpaaaeppkp
Disordered region (IsUnstruct)
*********************VHKLLEELVKIEF************FGAASVPGPVFFIFEKVSTFIVT*************************************************************************************
Disordered Region (DISOPRED)
***QT**************TAVHKLLEELVKIEFPG**************SVPGPVFFIFEKVSTF****************************************************************************************
Disordered Region (DISEMBL)
MKIQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGS*********FGAASVPGPVFFIFEKVSTFIVTEE**************************************************************TEPL*****************
Disordered Region (DISPRO)
MKIQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFIVTE***********************SSTAAVTEKDDVVVEEE********************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFIVTEEKAAEPATAAAGEETKPEQETTSSSTAAVTEKDDVVVEEEKKEEAPAGPEKTEPAEAAAAPAPTEPLPAAAKEDQPAAAEPPKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
Q96262	225	Plasma membrane-associate	yes	no	0.727	0.497	0.539	1e-19
Q0JPA6	204	Salt stress root protein	no	no	0.422	0.318	0.469	4e-07
A2WMG6	204	Salt stress root protein	N/A	no	0.422	0.318	0.469	4e-07

>sp|Q96262|PCAP1_ARATH Plasma membrane-associated cation-binding protein 1 OS=Arabidopsis thaliana GN=PCAP1 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/115 (53%), Positives = 73/115 (63%), Gaps = 3/115 (2%)

Query: 3   IQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEK 62
           ++ LV+D K  GLKK+S AV K LEELVKIEFPGSKAVSEASS FGA  V GPV FIFEK
Sbjct: 66  VKALVRDPKVAGLKKNSAAVQKYLEELVKIEFPGSKAVSEASSSFGAGYVAGPVTFIFEK 125

Query: 63  VSTFIVTEEKAAE-PATAAAGEETKPEQETTSSSTAAVTEKDDVVVEEEKKEEAP 116
           VS F+  E K  E P      EE  P +    + T   + + + +VEE KK E P
Sbjct: 126 VSVFLPEEVKTKEIPVEEVKAEE--PAKTEEPAKTEGTSGEKEEIVEETKKGETP 178

May be involved in intracellular signaling through interaction with PtdInsPs and calmodulin (CaM); may keep PtdInsPs attached to the plasma membrane until Ca(2+)-CaM reaches a competitive concentration subsequent to an increase triggered by a stimulus, thus leading to PtdInsPs release and subsequent activation of InsPs-dependent signaling cascade. Interacts competitively at the N-terminus with calcium ions and CaM (in a calcium-dependent manner), and with the phosphatidylinositol phosphates PtdIns(3,4,5)P(3), PtdIns(3,4)P(2), PtdIns(4,5)P(2) and PtdIns(3,5)P(2). Binds also weakly to PtdIns(3)P, PtdIns(4)P and PtdIns(5)P. Negative regulator of hypocotyl cell elongation by destabilizing cortical microtubules in a calcium-dependent manner. Binds directly to and destabilized microtubules to enhance microtubule depolymerization when cytoplasmic calcium increases. In case of Turnip mosaic virus (TuMV) infection, confers sensitivity by promoting viral cell-to-cell movement through interaction with viral P3N-PIPO.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0JPA6|SRS1_ORYSJ Salt stress root protein RS1 OS=Oryza sativa subsp. japonica GN=Os01g0233000 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 3   IQTLVKDRKE-DGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFE 61
           I+ L+KD+K    +KK+  AV K LEEL KI+FPG+K VS+A +K G   +   + FI E
Sbjct: 64  IKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILE 123

Query: 62  KVSTFI 67
           KV+ F+
Sbjct: 124 KVAPFV 129

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WMG6|SRS1_ORYSI Salt stress root protein RS1 OS=Oryza sativa subsp. indica GN=OsI_001009 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 3   IQTLVKDRKE-DGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFE 61
           I+ L+KD+K    +KK+  AV K LEEL KI+FPG+K VS+A +K G   +   + FI E
Sbjct: 64  IKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILE 123

Query: 62  KVSTFI 67
           KV+ F+
Sbjct: 124 KVAPFV 129

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
224072410	192	predicted protein [Populus trichocarpa]	0.597	0.479	0.673	6e-24
217071356	214	unknown [Medicago truncatula] gi|3885008	0.474	0.341	0.767	2e-23
224057896	195	predicted protein [Populus trichocarpa]	0.571	0.451	0.673	4e-23
388493148	223	unknown [Lotus japonicus]	0.564	0.390	0.663	4e-23
388518731	223	unknown [Lotus japonicus]	0.564	0.390	0.663	6e-23
255637925	218	unknown [Glycine max]	0.629	0.444	0.644	1e-22
356556130	218	PREDICTED: salt stress root protein RS1-	0.629	0.444	0.644	2e-22
351724599	207	uncharacterized protein LOC100499895 [Gl	0.616	0.458	0.632	3e-22
2764990	232	plasma membrane polypeptide [Nicotiana t	0.5	0.331	0.727	1e-21
255583930	209	endomembrane-associated protein, putativ	0.487	0.358	0.733	3e-21

>gi|224072410|ref|XP_002303722.1| predicted protein [Populus trichocarpa] gi|222841154|gb|EEE78701.1| predicted protein [Populus trichocarpa]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 70/92 (76%)

Query: 3   IQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEK 62
           I+TLVKD KE GLKK ST+V K L+ELVKIEFPGSK VSE SSK+G A V GP+FF+FEK
Sbjct: 66  IKTLVKDPKEAGLKKQSTSVQKFLDELVKIEFPGSKLVSETSSKYGPAYVSGPIFFVFEK 125

Query: 63  VSTFIVTEEKAAEPATAAAGEETKPEQETTSS 94
           VSTFI  EEKA E    A   ETK E+ TTS+
Sbjct: 126 VSTFIPVEEKAVEAPAPAPAPETKTEEATTST 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071356|gb|ACJ84038.1| unknown [Medicago truncatula] gi|388500800|gb|AFK38466.1| unknown [Medicago truncatula]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 64/73 (87%)

Query: 3   IQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEK 62
           I++LVK+R + GLKK+ST VHK +EELVKI+FPGSKAVSEASSKFG A V GPVFF+FEK
Sbjct: 66  IKSLVKERDQAGLKKNSTEVHKFIEELVKIDFPGSKAVSEASSKFGPALVSGPVFFVFEK 125

Query: 63  VSTFIVTEEKAAE 75
           VSTFIVTEEK  E
Sbjct: 126 VSTFIVTEEKVEE 138

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057896|ref|XP_002299378.1| predicted protein [Populus trichocarpa] gi|222846636|gb|EEE84183.1| predicted protein [Populus trichocarpa]

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 71/92 (77%), Gaps = 4/92 (4%)

Query: 3   IQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEK 62
           I+TLVKD KE GLKK +T+V K L+ELVKIEFPGSK VSEASSKFG A V GP+FF+FEK
Sbjct: 67  IKTLVKDPKEAGLKKQTTSVQKFLDELVKIEFPGSKVVSEASSKFGPAYVSGPIFFVFEK 126

Query: 63  VSTFIVTEEKAAEPATAAAGEETKPEQETTSS 94
           VSTFI  EEKA EP       ETK E+ T+S+
Sbjct: 127 VSTFIPVEEKAVEPPAP----ETKTEEATSST 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493148|gb|AFK34640.1| unknown [Lotus japonicus]

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 71/92 (77%), Gaps = 5/92 (5%)

Query: 3   IQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEK 62
           I++LVK++KE GLKK+ T VHK LEEL KIEFPGSK VSEASSKFG A VPGPV F+FEK
Sbjct: 66  IKSLVKEQKEAGLKKNPTEVHKFLEELAKIEFPGSKVVSEASSKFGPALVPGPVLFVFEK 125

Query: 63  VSTFIVTEEKAAEPATAAAGEETKPEQETTSS 94
           VSTFIVTEEK   P       ETK E+E +++
Sbjct: 126 VSTFIVTEEKVEAPPA-----ETKTEEEASTT 152

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518731|gb|AFK47427.1| unknown [Lotus japonicus]

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 71/92 (77%), Gaps = 5/92 (5%)

Query: 3   IQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEK 62
           I++LVK++KE GLKK+ T VHK LEEL KIEFPGSK VSEASSKFG A VPGPV F+FEK
Sbjct: 66  IKSLVKEQKEAGLKKNPTEVHKFLEELAKIEFPGSKVVSEASSKFGPALVPGPVLFVFEK 125

Query: 63  VSTFIVTEEKAAEPATAAAGEETKPEQETTSS 94
           VSTFIVTEEK   P       ETK E+E +++
Sbjct: 126 VSTFIVTEEKVEAPPA-----ETKTEEEASTT 152

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637925|gb|ACU19279.1| unknown [Glycine max]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 77/104 (74%), Gaps = 7/104 (6%)

Query: 3   IQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEK 62
           I++LVK+ KE GLKK+ST V K LEELVKI+FPGSKA SEASSKFG A   G VFF+FEK
Sbjct: 66  IKSLVKEPKEAGLKKNSTGVQKFLEELVKIDFPGSKAASEASSKFGPALASGSVFFVFEK 125

Query: 63  VSTFIVTEEKAAEPATAAAGEETKPEQETTSSSTAAVTEKDDVV 106
           VSTFIVTEEK  E   A  G ETK E+ET+S     V E++ VV
Sbjct: 126 VSTFIVTEEKDVE---APPGVETKTEEETSS----VVKEREIVV 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556130|ref|XP_003546380.1| PREDICTED: salt stress root protein RS1-like [Glycine max]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 77/104 (74%), Gaps = 7/104 (6%)

Query: 3   IQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEK 62
           I++LVK+ KE GLKK+ST V K LEELVKI+FPGSKA SEASSKFG A   G VFF+FEK
Sbjct: 66  IKSLVKEPKEAGLKKNSTEVQKFLEELVKIDFPGSKAASEASSKFGPALASGSVFFVFEK 125

Query: 63  VSTFIVTEEKAAEPATAAAGEETKPEQETTSSSTAAVTEKDDVV 106
           VSTFIVTEEK  E   A  G ETK E+ET+S     V E++ VV
Sbjct: 126 VSTFIVTEEKDVE---APPGVETKTEEETSS----VVKEREIVV 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724599|ref|NP_001237575.1| uncharacterized protein LOC100499895 [Glycine max] gi|255627491|gb|ACU14090.1| unknown [Glycine max]

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 77/106 (72%), Gaps = 11/106 (10%)

Query: 3   IQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEK 62
           I++LVK+ KE GLKK+ST V K LEELVKI+FPGSKA SEASSKFG A   G VFF+FEK
Sbjct: 66  IKSLVKEPKEAGLKKNSTEVQKFLEELVKIDFPGSKAASEASSKFGPALASGSVFFVFEK 125

Query: 63  VSTFIVTEEKAAE--PATAAAGEETKPEQETTSSSTAAVTEKDDVV 106
           VSTFIVTEEK  E  PA      ETK E+ET+S     V E++ VV
Sbjct: 126 VSTFIVTEEKEVEAPPAV-----ETKTEEETSS----VVKERETVV 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2764990|emb|CAA69900.1| plasma membrane polypeptide [Nicotiana tabacum]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 63/77 (81%)

Query: 1   MKIQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIF 60
           ++I+TLVK+ K  GLKKHST V KLL+ELVKIEFPGSKAVSEASS FG + V GPV F+F
Sbjct: 64  VEIKTLVKEPKVSGLKKHSTEVQKLLDELVKIEFPGSKAVSEASSNFGPSYVCGPVLFVF 123

Query: 61  EKVSTFIVTEEKAAEPA 77
           EKVSTFIVTE K  E A
Sbjct: 124 EKVSTFIVTENKKVEEA 140

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583930|ref|XP_002532713.1| endomembrane-associated protein, putative [Ricinus communis] gi|223527559|gb|EEF29680.1| endomembrane-associated protein, putative [Ricinus communis]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 62/75 (82%)

Query: 1   MKIQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIF 60
           ++++TLVK+ K+ GLKKHS  V K LEEL KIEFPGSK VSEASSKFG A V GPV+FIF
Sbjct: 64  VELKTLVKEPKDAGLKKHSALVQKFLEELAKIEFPGSKPVSEASSKFGPAYVSGPVYFIF 123

Query: 61  EKVSTFIVTEEKAAE 75
           EKVSTFIV EEKA E
Sbjct: 124 EKVSTFIVVEEKAKE 138

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
TAIR|locus:2120402	225	PCAP1 "AT4G20260" [Arabidopsis	0.428	0.293	0.712	1.4e-18

TAIR|locus:2120402 PCAP1 "AT4G20260" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 47/66 (71%), Positives = 53/66 (80%)

Query:     2 KIQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFE 61
             +++ LV+D K  GLKK+S AV K LEELVKIEFPGSKAVSEASS FGA  V GPV FIFE
Sbjct:    65 EVKALVRDPKVAGLKKNSAAVQKYLEELVKIEFPGSKAVSEASSSFGAGYVAGPVTFIFE 124

Query:    62 KVSTFI 67
             KVS F+
Sbjct:   125 KVSVFL 130


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.354    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      154        70   0.00091  102 3  11 22  0.47    28
                                                     29  0.41    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  384 (41 KB)
  Total size of DFA:  65 KB (2060 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.81u 0.22s 10.03t   Elapsed:  00:00:01
  Total cpu time:  9.81u 0.22s 10.03t   Elapsed:  00:00:01
  Start:  Thu May  9 21:23:49 2013   End:  Thu May  9 21:23:50 2013

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0009409 "response to cold" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005509 "calcium ion binding" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0010350 "cellular response to magnesium starvation" evidence=IEP

GO:0035865 "cellular response to potassium ion" evidence=IEP

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0071219 "cellular response to molecule of bacterial origin" evidence=IEP

GO:0071280 "cellular response to copper ion" evidence=IEP

GO:0071281 "cellular response to iron ion" evidence=IEP

GO:0071286 "cellular response to magnesium ion" evidence=IEP

GO:0071325 "cellular response to mannitol stimulus" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0072709 "cellular response to sorbitol" evidence=IEP

GO:0005516 "calmodulin binding" evidence=IDA

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IDA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=IMP

GO:0043325 "phosphatidylinositol-3,4-bisphosphate binding" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005881 "cytoplasmic microtubule" evidence=IDA

GO:0008017 "microtubule binding" evidence=IDA

GO:0031115 "negative regulation of microtubule polymerization" evidence=IDA

GO:0031117 "positive regulation of microtubule depolymerization" evidence=IDA

GO:0043622 "cortical microtubule organization" evidence=IMP;IDA

GO:0051511 "negative regulation of unidimensional cell growth" evidence=IMP

GO:0051592 "response to calcium ion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0075733 "intracellular transport of viral material" evidence=IMP

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	154
pfam05558	201	pfam05558, DREPP, DREPP plasma membrane polypeptid	1e-11
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.001
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.002
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.003
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.003

>gnl|CDD|218637 pfam05558, DREPP, DREPP plasma membrane polypeptide

 Score = 59.7 bits (144), Expect = 1e-11
 Identities = 73/136 (53%), Positives = 86/136 (63%)

Query: 3   IQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEK 62
           I+TLVK++K  GLKK+STAV K LEELVKIEFPGSKAVSEASSK G A V GPVFF+FEK
Sbjct: 66  IKTLVKEKKVSGLKKNSTAVQKFLEELVKIEFPGSKAVSEASSKVGPALVSGPVFFVFEK 125

Query: 63  VSTFIVTEEKAAEPATAAAGEETKPEQETTSSSTAAVTEKDDVVVEEEKKEEAPAGPEKT 122
           VSTFIV E+K  E A AA  E+    +E          E++ V V      +AP    + 
Sbjct: 126 VSTFIVEEKKPEEEAPAAETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEE 185

Query: 123 EPAEAAAAPAPTEPLP 138
            PA+A AAPA      
Sbjct: 186 TPAKAPAAPAAEPQKA 201

This family contains several plant plasma membrane proteins termed DREPPs as they are developmentally regulated plasma membrane polypeptides. Length = 201

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 17/82 (20%), Positives = 18/82 (21%), Gaps = 12/82 (14%)

Query: 73  AAEPATAAAGEETKPEQETTSSSTAAVTEKDDVVVEEEKKEEAPAGPEKTEPAEAAAAPA 132
            A  A AAA            +  A                   A      P  AAAA A
Sbjct: 45  TAAAAAAAAAASAPAAAPAAKAPAAPAPAP------------PAAAAPAAPPKPAAAAAA 92

Query: 133 PTEPLPAAAKEDQPAAAEPPKP 154
              P    A     A A     
Sbjct: 93  AAAPAAPPAAAAAAAPAAAAVE 114

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 17/64 (26%), Positives = 20/64 (31%)

Query: 91  TTSSSTAAVTEKDDVVVEEEKKEEAPAGPEKTEPAEAAAAPAPTEPLPAAAKEDQPAAAE 150
            T+++ AA             K  A   P     A  AA P P     AAA    P AA 
Sbjct: 44  PTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAA 103

Query: 151 PPKP 154
               
Sbjct: 104 AAAA 107

Length = 1228

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 16/87 (18%), Positives = 25/87 (28%)

Query: 68  VTEEKAAEPATAAAGEETKPEQETTSSSTAAVTEKDDVVVEEEKKEEAPAGPEKTEPAEA 127
           V  E   E          +      +     +TE D  V +E  +   P    + E A+ 
Sbjct: 900 VVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADI 959

Query: 128 AAAPAPTEPLPAAAKEDQPAAAEPPKP 154
             A    E + A  +     AA     
Sbjct: 960 EEAAETAEVVVAEPEVVAQPAAPVVAE 986

Length = 1068

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 16/81 (19%), Positives = 23/81 (28%)

Query: 67   IVTEEKAAEPATAAAGEETKPEQETTSSSTAAVTEKDDVVVEEEKKEEAPAGPEKTEPAE 126
            I   + A     A   E     Q+ T+    A    + VV E E   +  A       AE
Sbjct: 931  ITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAE 990

Query: 127  AAAAPAPTEPLPAAAKEDQPA 147
                 A    +  A   +   
Sbjct: 991  VETVTAVEPEVAPAQVPEATV 1011

Length = 1068

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 19/72 (26%), Positives = 22/72 (30%), Gaps = 3/72 (4%)

Query: 83  EETKPEQETTSSSTAAVTEKDDVVVEEEKKEEAPAGPEKTEPAEAAAAPAPTEPLPAAAK 142
            +  P      ++ AA                A   P    PA  AAA     P PAAA 
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAA---SAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA 90

Query: 143 EDQPAAAEPPKP 154
               A A PP  
Sbjct: 91  AAAAAPAAPPAA 102

Length = 1228

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 5/82 (6%)

Query: 73  AAEPATAAAGEETKPEQETTSSSTAAVTEKDDVVVEEEKKEEAPAGPEKTEPAEAAAAPA 132
              PA+A       P  ETTS   AA  +        + K+  PA   +  P       +
Sbjct: 400 PPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARP-----VNS 454

Query: 133 PTEPLPAAAKEDQPAAAEPPKP 154
             E L +           P K 
Sbjct: 455 ALERLASVRPAPSALEKAPAKK 476

Length = 647

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
PF05558	206	DREPP: DREPP plasma membrane polypeptide; InterPro	100.0

>PF05558 DREPP: DREPP plasma membrane polypeptide; InterPro: IPR008469 This family contains several plant plasma membrane proteins termed DREPPs as they are developmentally regulated plasma membrane polypeptides [], including the salt stress root protein RS1

Probab=100.00  E-value=4.6e-45  Score=298.17  Aligned_cols=108  Identities=70%  Similarity=0.937  Sum_probs=92.7

Q ss_pred             ccccccccccccccccchHHHHHHHHHHHhhcCCCchhhhhhhhhcCCccCCCceeEEEecceeeeeccccccccccccC
Q 031720            2 KIQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFIVTEEKAAEPATAAA   81 (154)
Q Consensus         2 eiK~LVKe~k~sglKKnSaaV~KfleELvKIeFPGsK~VSEAsSK~Gpa~vsGPV~fifEKVStFi~~Eek~~E~p~~~~   81 (154)
                      |||+||||||++||||||++||||||||+||||||||+||||+|||||+||||||||||||||||||+|++..+.|+  +
T Consensus        65 eiK~LvKe~k~aglKKns~~V~KfleEL~kIeFPGsk~vsEa~sk~Gp~~~sgpv~fifeKVstfi~eE~k~~e~~~--~  142 (206)
T PF05558_consen   65 EIKTLVKEPKVAGLKKNSAAVQKFLEELVKIEFPGSKAVSEASSKFGPALVSGPVFFIFEKVSTFIPEEEKAEEAPA--P  142 (206)
T ss_pred             HHHHHHhCcchhccccccHHHHHHHHHhhhcCCcchhHhhhhhcccCccccccceeeeeeccccccccccccccCCC--c
Confidence            79999999999999999999999999999999999999999999999999999999999999999998887666553  2


Q ss_pred             CCCCCcccccccCCccccccccchhhhhhhhccCCC
Q 031720           82 GEETKPEQETTSSSTAAVTEKDDVVVEEEKKEEAPA  117 (154)
Q Consensus        82 ~~etktEe~a~~~~~~~~~EK~eivvEeeKKee~~~  117 (154)
                      +.+++++++++     +++|| ++++|++||+++..
T Consensus       143 a~e~~~~ee~~-----~v~ek-e~vvEe~kkee~~~  172 (206)
T PF05558_consen  143 AAEEKKTEEAA-----AVKEK-EIVVEEEKKEEAAA  172 (206)
T ss_pred             ccccccccccc-----ccccc-hhhhhhhhcccccc
Confidence            33444444332     47788 99999888876643

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	154
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-04
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-04

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 3/89 (3%)

Query: 69  TEEKAAEPATAAAGEETKPEQETTSSSTAAVTEKDDVVVE---EEKKEEAPAGPEKTEPA 125
            E         A G  T  E  + +S+ AA TE  +       EEK  E  A     E  
Sbjct: 54  GEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAK 113

Query: 126 EAAAAPAPTEPLPAAAKEDQPAAAEPPKP 154
             +      +P      ++   AAE  K 
Sbjct: 114 PKSDKETEAKPEATNQGDESKPAAEANKT 142

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 16/86 (18%), Positives = 24/86 (27%), Gaps = 1/86 (1%)

Query: 70  EEKAAEPATAAAGEETKPEQETTSSSTAAVTEKDDVVVEEEKKEEAPAGPEKTEPAEA-A 128
                E       E   PE    ++   +   +      +++ E   A   K E AE  A
Sbjct: 10  HHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVA 69

Query: 129 AAPAPTEPLPAAAKEDQPAAAEPPKP 154
            A     P    A   + A A     
Sbjct: 70  TASETASPASNEAATTETAEAASAAK 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00