Citrus Sinensis ID: 031726

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTKNPWSPKSTRLRQQ
cccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccEEEEcccccccccEEEEEccHHHHHHHHHcccccccHHHHHHHHHcHHHHHHHHHHHcEEEEcHHHHHHcccccccccccccccccccccccccHHHHHHHHcc
cccccHHHHHHHHHHHHHHcHHHcccccEEEEEEEEEEccccccccccccEEEEcccccccccEEEEEccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccccccccccccccHHHHHHHHHcc
MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIglknydpqkdkrfsgsvklphiprpkmkvcmlgDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPrllgpglnkagnslpllltknpwspkstrlrqq
MSKLQSDALREAVSSIvqysketkkrnftetielqiglknydpqkdkrfsgsvklphiprpKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSlpllltknpwspkstrlrqq
MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGlkklnknkklvkklakkYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTKNPWSPKSTRLRQQ
****************************TETIELQIGLK**********************KMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLL***************
*SKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLL****PWSPKSTRLR**
**********EAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTKNPW**********
****QSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTKNPWSPKSTR**Q*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTKNPWSPKSTRLRQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query154 2.2.26 [Sep-21-2011]
P59231217 60S ribosomal protein L10 yes no 0.902 0.640 0.857 4e-55
Q8VZB9216 60S ribosomal protein L10 no no 0.896 0.638 0.842 5e-52
P59230216 60S ribosomal protein L10 no no 0.896 0.638 0.828 5e-51
Q7RZS0217 60S ribosomal protein L10 N/A no 0.857 0.608 0.659 3e-40
Q9VTP4217 60S ribosomal protein L10 yes no 0.889 0.631 0.712 5e-40
Q963B6217 60S ribosomal protein L10 N/A no 0.889 0.631 0.719 8e-40
Q9SW75213 60S ribosomal protein L10 N/A no 0.902 0.652 0.690 1e-39
Q9UVJ4217 60S ribosomal protein L10 N/A no 0.857 0.608 0.666 7e-39
P0CX44217 60S ribosomal protein L1- yes no 0.857 0.608 0.659 6e-38
P0CX43217 60S ribosomal protein L1- yes no 0.857 0.608 0.659 6e-38
>sp|P59231|R10A3_ARATH 60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=2 SV=1 Back     alignment and function desciption
 Score =  213 bits (541), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 120/140 (85%), Positives = 131/140 (93%), Gaps = 1/140 (0%)

Query: 1   MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
           MSKLQS+A+REA+SSI+ + KETK RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 61  PKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI 120
           PKMK+CMLGDAQHVEEAEKIGL+ MDVE LKKLNKNKKLVKKLAKK+HAFLASESVIKQI
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 121 PRLLGPGLNKAGNSLPLLLT 140
           PRLLGPGLNKAG   P L++
Sbjct: 121 PRLLGPGLNKAGK-FPTLVS 139

Arabidopsis thaliana (taxid: 3702)
>sp|Q8VZB9|R10A1_ARATH 60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1 Back     alignment and function description
>sp|P59230|R10A2_ARATH 60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1 Back     alignment and function description
>sp|Q7RZS0|RL10A_NEUCR 60S ribosomal protein L10a OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-10a PE=3 SV=1 Back     alignment and function description
>sp|Q9VTP4|R10AB_DROME 60S ribosomal protein L10a-2 OS=Drosophila melanogaster GN=RpL10Ab PE=2 SV=2 Back     alignment and function description
>sp|Q963B6|RL10A_SPOFR 60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1 Back     alignment and function description
>sp|Q9SW75|RL10A_CHLRE 60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A PE=2 SV=1 Back     alignment and function description
>sp|Q9UVJ4|RL10A_CANAL 60S ribosomal protein L10a OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPL10A PE=3 SV=2 Back     alignment and function description
>sp|P0CX44|RL1B_YEAST 60S ribosomal protein L1-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL1B PE=1 SV=1 Back     alignment and function description
>sp|P0CX43|RL1A_YEAST 60S ribosomal protein L1-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL1A PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query154
359479518216 PREDICTED: 60S ribosomal protein L10a-1- 0.896 0.638 0.907 3e-55
147789820 920 hypothetical protein VITISV_004804 [Viti 0.844 0.141 0.938 1e-54
226501466 382 uncharacterized protein LOC100272335 [Ze 0.896 0.361 0.821 2e-53
192910762216 ribosomal protein L10a [Elaeis guineensi 0.896 0.638 0.878 2e-53
449463066216 PREDICTED: 60S ribosomal protein L10a-1- 0.896 0.638 0.885 2e-53
15242248217 60S ribosomal protein L10a-3 [Arabidopsi 0.902 0.640 0.857 2e-53
449443440216 PREDICTED: 60S ribosomal protein L10a-1- 0.896 0.638 0.878 4e-53
225440890216 PREDICTED: 60S ribosomal protein L10a-1- 0.896 0.638 0.878 4e-53
195605856216 60S ribosomal protein L10a-1 [Zea mays] 0.896 0.638 0.821 5e-53
224028625215 unknown [Zea mays] 0.896 0.641 0.821 5e-53
>gi|359479518|ref|XP_002274218.2| PREDICTED: 60S ribosomal protein L10a-1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/140 (90%), Positives = 133/140 (95%), Gaps = 2/140 (1%)

Query: 1   MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
           MSKLQSDALREA+++IV  SKE KKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR
Sbjct: 1   MSKLQSDALREAITNIVNESKE-KKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 59

Query: 61  PKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI 120
           PKMKVCMLGDAQHVEEAEKIGL+YMDVEGLKKLNKNKKLVKKLAKKYHAFLASE+VIKQI
Sbjct: 60  PKMKVCMLGDAQHVEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 119

Query: 121 PRLLGPGLNKAGNSLPLLLT 140
           PRLLGPGLNKAG   P L+T
Sbjct: 120 PRLLGPGLNKAG-KFPTLVT 138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147789820|emb|CAN67239.1| hypothetical protein VITISV_004804 [Vitis vinifera] Back     alignment and taxonomy information
>gi|226501466|ref|NP_001140290.1| uncharacterized protein LOC100272335 [Zea mays] gi|194698874|gb|ACF83521.1| unknown [Zea mays] Back     alignment and taxonomy information
>gi|192910762|gb|ACF06489.1| ribosomal protein L10a [Elaeis guineensis] Back     alignment and taxonomy information
>gi|449463066|ref|XP_004149255.1| PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis sativus] gi|449516181|ref|XP_004165126.1| PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15242248|ref|NP_197636.1| 60S ribosomal protein L10a-3 [Arabidopsis thaliana] gi|145334533|ref|NP_001078612.1| 60S ribosomal protein L10a-3 [Arabidopsis thaliana] gi|297812373|ref|XP_002874070.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|27923990|sp|P59231.1|R10A3_ARATH RecName: Full=60S ribosomal protein L10a-3 gi|9757825|dbj|BAB08343.1| 60S ribosomal protein L10A [Arabidopsis thaliana] gi|14335148|gb|AAK59854.1| AT5g22440/MWD9_24 [Arabidopsis thaliana] gi|18655359|gb|AAL76135.1| AT5g22440/MWD9_24 [Arabidopsis thaliana] gi|297319907|gb|EFH50329.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|332005643|gb|AED93026.1| 60S ribosomal protein L10a-3 [Arabidopsis thaliana] gi|332005644|gb|AED93027.1| 60S ribosomal protein L10a-3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449443440|ref|XP_004139485.1| PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225440890|ref|XP_002282641.1| PREDICTED: 60S ribosomal protein L10a-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|195605856|gb|ACG24758.1| 60S ribosomal protein L10a-1 [Zea mays] gi|195605912|gb|ACG24786.1| 60S ribosomal protein L10a-1 [Zea mays] gi|195618532|gb|ACG31096.1| 60S ribosomal protein L10a-1 [Zea mays] gi|195623048|gb|ACG33354.1| 60S ribosomal protein L10a-1 [Zea mays] gi|195657523|gb|ACG48229.1| 60S ribosomal protein L10a-1 [Zea mays] gi|414870104|tpg|DAA48661.1| TPA: ribosomal protein isoform 1 [Zea mays] gi|414870105|tpg|DAA48662.1| TPA: ribosomal protein isoform 2 [Zea mays] Back     alignment and taxonomy information
>gi|224028625|gb|ACN33388.1| unknown [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query154
TAIR|locus:2176337217 AT5G22440 [Arabidopsis thalian 0.902 0.640 0.735 9.5e-50
TAIR|locus:2201811216 AT1G08360 [Arabidopsis thalian 0.896 0.638 0.721 4.2e-47
TAIR|locus:2042087216 PGY1 "PIGGYBACK1" [Arabidopsis 0.896 0.638 0.714 8.8e-47
FB|FBgn0036213217 RpL10Ab "Ribosomal protein L10 0.889 0.631 0.597 1.1e-37
GENEDB_PFALCIPARUM|PF14_0391217 PF14_0391 "ribosomal protein L 0.909 0.645 0.549 1.9e-35
UNIPROTKB|Q8IL58217 PF14_0391 "60S ribosomal prote 0.909 0.645 0.549 1.9e-35
CGD|CAL0005037217 RPL10A [Candida albicans (taxi 0.915 0.649 0.521 3.1e-35
ZFIN|ZDB-GENE-030131-2025216 rpl10a "ribosomal protein L10a 0.909 0.648 0.570 4e-35
SGD|S000006141217 RPL1A "Ribosomal 60S subunit p 0.915 0.649 0.521 6.5e-35
SGD|S000003103217 RPL1B "Ribosomal 60S subunit p 0.915 0.649 0.521 6.5e-35
TAIR|locus:2176337 AT5G22440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 103/140 (73%), Positives = 114/140 (81%)

Query:     1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
             MSKLQS+A+REA+SSI+ + KETK RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct:     1 MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query:    61 PKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQI 120
             PKMK+CMLGDAQHVEEAEKIGL+ MDVE                  +HAFLASESVIKQI
Sbjct:    61 PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query:   121 PRLLGPGLNKAGNSLPLLLT 140
             PRLLGPGLNKAG   P L++
Sbjct:   121 PRLLGPGLNKAGK-FPTLVS 139
GO:0003723 "RNA binding" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0015934 "large ribosomal subunit" evidence=IEA
GO:0005730 "nucleolus" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
TAIR|locus:2201811 AT1G08360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042087 PGY1 "PIGGYBACK1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0036213 RpL10Ab "Ribosomal protein L10Ab" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF14_0391 PF14_0391 "ribosomal protein L1, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IL58 PF14_0391 "60S ribosomal protein L1, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
CGD|CAL0005037 RPL10A [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2025 rpl10a "ribosomal protein L10a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
SGD|S000006141 RPL1A "Ribosomal 60S subunit protein L1A" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
SGD|S000003103 RPL1B "Ribosomal 60S subunit protein L1B" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P53026RL10A_MOUSENo assigned EC number0.65240.90250.6405yesno
P53027RL10A_PIGNo assigned EC number0.64530.90250.8424yesno
O14363RL1A_SCHPONo assigned EC number0.67420.85060.6064yesno
P0CX43RL1A_YEASTNo assigned EC number0.65900.85710.6082yesno
Q6FRF5RL10A_CANGANo assigned EC number0.64390.85710.6082yesno
Q755D9RL10A_ASHGONo assigned EC number0.65150.85710.6082yesno
P0CX44RL1B_YEASTNo assigned EC number0.65900.85710.6082yesno
Q86L05RL10A_DICDINo assigned EC number0.57440.89610.6359yesno
Q6PC69RL10A_DANRENo assigned EC number0.69010.90900.6481yesno
P62907RL10A_RATNo assigned EC number0.65950.90250.6405yesno
P62906RL10A_HUMANNo assigned EC number0.65950.90250.6405yesno
Q5E9E6RL10A_BOVINNo assigned EC number0.65950.90250.6405yesno
Q963B6RL10A_SPOFRNo assigned EC number0.71940.88960.6313N/Ano
Q9VTP4R10AB_DROMENo assigned EC number0.71220.88960.6313yesno
Q9N4I4RL10A_CAEELNo assigned EC number0.62850.89610.6388yesno
P59231R10A3_ARATHNo assigned EC number0.85710.90250.6405yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query154
PTZ00029216 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Pr 2e-72
PTZ00225214 PTZ00225, PTZ00225, 60S ribosomal protein L10a; Pr 2e-42
cd00403208 cd00403, Ribosomal_L1, Ribosomal protein L1 6e-40
pfam00687200 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10 7e-36
COG0081228 COG0081, RplA, Ribosomal protein L1 [Translation, 6e-27
PRK04203215 PRK04203, rpl1P, 50S ribosomal protein L1P; Review 4e-22
TIGR01169227 TIGR01169, rplA_bact, ribosomal protein L1, bacter 6e-04
PRK05424230 PRK05424, rplA, 50S ribosomal protein L1; Validate 0.001
>gnl|CDD|185405 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Provisional Back     alignment and domain information 
 Score =  215 bits (550), Expect = 2e-72
 Identities = 101/142 (71%), Positives = 124/142 (87%), Gaps = 2/142 (1%)

Query: 1   MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
           MSKL S+ALR+A++ I++ S+E KKR F ET+ELQIGLK+YD QKDKRFSGSVKLP++P+
Sbjct: 1   MSKLSSEALRKAIAEILEGSEE-KKRKFVETVELQIGLKDYDTQKDKRFSGSVKLPNVPK 59

Query: 61  PKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI 120
           P +KVC+LGDA H +EA+K+GLD+MD+EGLKK NKNKKLVKKLAKKY AFLAS+S++ QI
Sbjct: 60  PNLKVCVLGDAVHCDEAKKLGLDFMDIEGLKKFNKNKKLVKKLAKKYDAFLASQSLLPQI 119

Query: 121 PRLLGPGLNKAGNSLPLLLTKN 142
           PRLLGPGLNKAG   P L+T N
Sbjct: 120 PRLLGPGLNKAGK-FPTLITHN 140

Length = 216
>gnl|CDD|140252 PTZ00225, PTZ00225, 60S ribosomal protein L10a; Provisional Back     alignment and domain information
>gnl|CDD|238235 cd00403, Ribosomal_L1, Ribosomal protein L1 Back     alignment and domain information
>gnl|CDD|216061 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e family Back     alignment and domain information
>gnl|CDD|223159 COG0081, RplA, Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235254 PRK04203, rpl1P, 50S ribosomal protein L1P; Reviewed Back     alignment and domain information
>gnl|CDD|211630 TIGR01169, rplA_bact, ribosomal protein L1, bacterial/chloroplast Back     alignment and domain information
>gnl|CDD|180071 PRK05424, rplA, 50S ribosomal protein L1; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 154
PTZ00225214 60S ribosomal protein L10a; Provisional 100.0
PTZ00029216 60S ribosomal protein L10a; Provisional 100.0
PRK04203215 rpl1P 50S ribosomal protein L1P; Reviewed 100.0
COG0081228 RplA Ribosomal protein L1 [Translation, ribosomal 100.0
CHL00129229 rpl1 ribosomal protein L1; Reviewed 100.0
PRK05424230 rplA 50S ribosomal protein L1; Validated 100.0
TIGR01169227 rplA_bact ribosomal protein L1, bacterial/chloropl 100.0
TIGR01170141 rplA_mito ribosomal protein L1, mitochondrial. Thi 100.0
KOG1570218 consensus 60S ribosomal protein L10A [Translation, 99.98
cd00403208 Ribosomal_L1 Ribosomal protein L1. The L1 protein, 99.96
PF00687220 Ribosomal_L1: Ribosomal protein L1p/L10e family; I 99.91
KOG1569323 consensus 50S ribosomal protein L1 [Translation, r 99.83
KOG1685 343 consensus Uncharacterized conserved protein [Funct 98.53
PF13003133 MRL1: Ribosomal protein L1; InterPro: IPR024663 Th 96.46
TIGR01170141 rplA_mito ribosomal protein L1, mitochondrial. Thi 96.45
CHL00129229 rpl1 ribosomal protein L1; Reviewed 95.94
COG0081228 RplA Ribosomal protein L1 [Translation, ribosomal 95.58
TIGR01169227 rplA_bact ribosomal protein L1, bacterial/chloropl 95.56
PRK05424230 rplA 50S ribosomal protein L1; Validated 95.54
PRK04203215 rpl1P 50S ribosomal protein L1P; Reviewed 88.8
>PTZ00225 60S ribosomal protein L10a; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.4e-47  Score=304.06  Aligned_cols=151  Identities=50%  Similarity=0.807  Sum_probs=145.1

Q ss_pred             CCcccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCCCCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHc
Q 031726            1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKI   80 (154)
Q Consensus         1 ~~~~~~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~a   80 (154)
                      |||++++.+.+||+.+++..   ++++|+||||++|+|||+||++++++||+|.|||++|+..+|||||+++++++|+++
T Consensus         1 m~k~~~~~i~~Av~~~lk~~---~~~kF~Etvdl~v~Lk~iDp~kd~~irg~v~LPhg~gk~~kV~v~~~~~~~~~Ak~a   77 (214)
T PTZ00225          1 MSKIPPQTLSEAIQAVLKVD---KERKFKESIDLQVNLKNYDPQKDKRFSGSLKLPNVCRPRMTVCLLCDLVHEDIAKKE   77 (214)
T ss_pred             CCcCCHHHHHHHHHHHHHhc---ccCCCCceEEEEEeccCcCCCcCcccceeEECCCCCCCCcEEEEECChHHHHHHHHC
Confidence            89999999999999988644   889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCCCCChHHHHHHHhcC
Q 031726           81 GLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTKNPWSPKSTRLRQQ  154 (154)
Q Consensus        81 Ga~~vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~~~dl~~~i~~~k~~  154 (154)
                      ||+++|.+||++++++++.+|||+.+||+|||+|+|||.|||+|||.|+|++|||+++++++|+.+.|++++++
T Consensus        78 Gad~v~~e~l~~l~k~~~~~kkl~~~fD~fiA~~~~m~~lgk~LGp~~~p~gK~P~~~~~~~dl~~~i~~~k~~  151 (214)
T PTZ00225         78 GVPTMNQEELKKLNKNKKLVKKMCNQYDAFLCSESIIKTVPRLVGPHMHRMGKFPTVCSPSESLPDKVVELRST  151 (214)
T ss_pred             CCCEECHHHHHHHHhccHHHHHHHhhCCEEEECHHHHHhhhhhcCCCCCcCCCCCcccCCccCHHHHHHHHhhe
Confidence            99999999999999999999999999999999999999999999998889999999999999999999999863

>PTZ00029 60S ribosomal protein L10a; Provisional Back     alignment and domain information
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed Back     alignment and domain information
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00129 rpl1 ribosomal protein L1; Reviewed Back     alignment and domain information
>PRK05424 rplA 50S ribosomal protein L1; Validated Back     alignment and domain information
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast Back     alignment and domain information
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial Back     alignment and domain information
>KOG1570 consensus 60S ribosomal protein L10A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00403 Ribosomal_L1 Ribosomal protein L1 Back     alignment and domain information
>PF00687 Ribosomal_L1: Ribosomal protein L1p/L10e family; InterPro: IPR002143 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG1569 consensus 50S ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1685 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13003 MRL1: Ribosomal protein L1; InterPro: IPR024663 This entry represents a ribosomal protein L1 domain found mainly in chordates Back     alignment and domain information
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial Back     alignment and domain information
>CHL00129 rpl1 ribosomal protein L1; Reviewed Back     alignment and domain information
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast Back     alignment and domain information
>PRK05424 rplA 50S ribosomal protein L1; Validated Back     alignment and domain information
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query154
3izr_A216 Localization Of The Large Subunit Ribosomal Protein 3e-52
1s1i_A217 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 1e-38
2noq_G213 Structure Of Ribosome-Bound Cricket Paralysis Virus 6e-37
3zf7_J214 High-resolution Cryo-electron Microscopy Structure 1e-28
3j21_A216 Promiscuous Behavior Of Proteins In Archaeal Riboso 9e-08
3qoy_A242 Crystal Structure Of Ribosomal Protein L1 From Aqui 7e-06
1cjs_A219 Crystal Structure Of Ribosomal Protein L1 From Meth 9e-05
1u63_A219 The Structure Of A Ribosomal Protein L1-Mrna Comple 2e-04
3umy_A228 Crystal Structure Of Mutant Ribosomal Protein T217a 3e-04
2v49_C229 Structure Of The Ribosome Recycling Factor Bound To 3e-04
2j01_C229 Structure Of The Thermus Thermophilus 70s Ribosome 3e-04
4f9t_A229 Ribosomal Protein L1 From Thermus Thermophilus With 3e-04
1zho_A228 The Structure Of A Ribosomal Protein L1 In Complex 3e-04
3u42_A229 Mutant Ribosomal Protein L1 From Thermus Thermophil 3e-04
2hgj_C229 Fitting Of Components With Known Structure Into An 3e-04
1ml5_c228 Crystal Structure Of The Ribosome At 5.5 A Resoluti 3e-04
2hw8_A228 Structure Of Ribosomal Protein L1-Mrna Complex At 2 4e-04
3tg8_A228 Mutant Ribosomal Protein L1 Lacking Ala158 From The 4e-04
3zvp_C229 Crystal Structure Of The Hybrid State Of Ribosome I 4e-04
487d_H224 Seven Ribosomal Proteins Fitted To A Cryo-Electron 4e-04
1ad2_A228 Ribosomal Protein L1 Mutant With Serine 179 Replace 4e-04
3fin_C191 T. Thermophilus 70s Ribosome In Complex With Mrna, 8e-04
>pdb|3IZR|A Chain A, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 216 Back     alignment and structure 
Iteration: 1

 Score =  200 bits (508), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/140 (69%), Positives = 113/140 (80%), Gaps = 2/140 (1%)
Query: 1   MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
           MSKLQSDA+++A++ IV  ++E KKR FTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPR
Sbjct: 1   MSKLQSDAVKDAITQIVGEARE-KKRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPR 59
Query: 61  PKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQI 120
           PKM+VCMLGDAQHV++AEK+GLDYMDVE                  YHAFLASE++IKQI
Sbjct: 60  PKMRVCMLGDAQHVDQAEKMGLDYMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQI 119
Query: 121 PRLLGPGLNKAGNSLPLLLT 140
           PRLLGPGLNKAG   P L++
Sbjct: 120 PRLLGPGLNKAGK-FPTLVS 138
>pdb|1S1I|A Chain A, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 217 Back     alignment and structure
>pdb|2NOQ|G Chain G, Structure Of Ribosome-Bound Cricket Paralysis Virus Ires Rna Length = 213 Back     alignment and structure
>pdb|3ZF7|J Chain J, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 214 Back     alignment and structure
>pdb|3J21|A Chain A, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 216 Back     alignment and structure
>pdb|3QOY|A Chain A, Crystal Structure Of Ribosomal Protein L1 From Aquifex Aeolicus Length = 242 Back     alignment and structure
>pdb|1CJS|A Chain A, Crystal Structure Of Ribosomal Protein L1 From Methanococcus Jannaschii Length = 219 Back     alignment and structure
>pdb|1U63|A Chain A, The Structure Of A Ribosomal Protein L1-Mrna Complex Length = 219 Back     alignment and structure
>pdb|3UMY|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217a Tthl1 In Complex With 80nt 23s Rna From Thermus Thermophilus Length = 228 Back     alignment and structure
>pdb|2V49|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 4 Of 4). This File Contains The 50s Subunit Of Molecule 2 Length = 229 Back     alignment and structure
>pdb|2J01|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 229 Back     alignment and structure
>pdb|4F9T|A Chain A, Ribosomal Protein L1 From Thermus Thermophilus With Substitution Thr217ala Length = 229 Back     alignment and structure
>pdb|1ZHO|A Chain A, The Structure Of A Ribosomal Protein L1 In Complex With Mrna Length = 228 Back     alignment and structure
>pdb|3U42|A Chain A, Mutant Ribosomal Protein L1 From Thermus Thermophilus With Threonine 217 Replaced By Valine Length = 229 Back     alignment and structure
>pdb|2HGJ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. Length = 229 Back     alignment and structure
>pdb|1ML5|CC Chain c, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 228 Back     alignment and structure
>pdb|2HW8|A Chain A, Structure Of Ribosomal Protein L1-Mrna Complex At 2.1 Resolution Length = 228 Back     alignment and structure
>pdb|3TG8|A Chain A, Mutant Ribosomal Protein L1 Lacking Ala158 From Thermus Thermophilus Length = 228 Back     alignment and structure
>pdb|3ZVP|C Chain C, Crystal Structure Of The Hybrid State Of Ribosome In Complex With The Guanosine Triphosphatase Release Factor 3 Length = 229 Back     alignment and structure
>pdb|487D|H Chain H, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 224 Back     alignment and structure
>pdb|1AD2|A Chain A, Ribosomal Protein L1 Mutant With Serine 179 Replaced By Cysteine Length = 228 Back     alignment and structure
>pdb|3FIN|C Chain C, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 191 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query154
3o58_A217 L10A, 60S ribosomal protein L1; ribosomal RNA and 8e-60
3iz5_A216 60S ribosomal protein L1 (L1P); eukaryotic ribosom 1e-55
2zkr_5212 60S ribosomal protein L10A; protein-RNA complex, 6 6e-52
1mzp_A217 50S ribosomal protein L1P; ribosome, RNA-protein c 2e-48
1i2a_A219 50S ribosomal protein L1P; primary rRNA-binding pr 6e-47
3qoy_A242 50S ribosomal protein L1; beta-alpha-beta, structu 7e-06
2wwq_5234 50S ribosomal protein L1; ribosomal protein, ribon 2e-05
4f9t_A229 50S ribosomal protein L1; rossman fold, RNA; HET: 2e-05
3bbo_D352 Ribosomal protein L1; large ribosomal subunit, spi 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 3izs_A 1s1i_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A Length = 217 Back     alignment and structure
 Score =  183 bits (466), Expect = 8e-60
 Identities = 89/143 (62%), Positives = 114/143 (79%), Gaps = 1/143 (0%)

Query: 1   MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
           MSK+ S  +RE V  +++YS ETKKRNF ET+ELQ+GLKNYDPQ+DKRFSGS+KLP+ PR
Sbjct: 1   MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPR 60

Query: 61  PKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI 120
           P M +C+ GDA  V+ A+  G+D M V+ LKKLNKNKKL+KKL+KKY+AF+ASE +IKQ+
Sbjct: 61  PNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQV 120

Query: 121 PRLLGPGLNKAGNSLPLLLTKNP 143
           PRLLGP L+KAG   P  ++ N 
Sbjct: 121 PRLLGPQLSKAG-KFPTPVSHND 142
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 212 Back     alignment and structure
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Length = 217 Back     alignment and structure
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Length = 219 Back     alignment and structure
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus} Length = 242 Back     alignment and structure
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2 Length = 234 Back     alignment and structure
>4f9t_A 50S ribosomal protein L1; rossman fold, RNA; HET: MPD; 1.46A {Thermus thermophilus} PDB: 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 2hw8_A 2j01_C 2j03_C 2jl6_C 2jl8_C 2om7_K* 2v47_C ... Length = 229 Back     alignment and structure
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 352 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query154
3iz5_A216 60S ribosomal protein L1 (L1P); eukaryotic ribosom 100.0
3o58_A217 L10A, 60S ribosomal protein L1; ribosomal RNA and 100.0
1i2a_A219 50S ribosomal protein L1P; primary rRNA-binding pr 100.0
1mzp_A217 50S ribosomal protein L1P; ribosome, RNA-protein c 100.0
2zkr_5212 60S ribosomal protein L10A; protein-RNA complex, 6 100.0
3j21_A216 50S ribosomal protein L1P; archaea, archaeal, KINK 100.0
3u42_A229 50S ribosomal protein L1; rossmann fold, rRNA bind 100.0
3qoy_A242 50S ribosomal protein L1; beta-alpha-beta, structu 100.0
2wwq_5234 50S ribosomal protein L1; ribosomal protein, ribon 100.0
3bbo_D352 Ribosomal protein L1; large ribosomal subunit, spi 100.0
2ftc_A189 Mitochondrial ribosomal protein L1; mitochondrial 99.95
2ov7_A137 50S ribosomal protein L1; 2.30A {Thermus thermophi 99.27
3qoy_A242 50S ribosomal protein L1; beta-alpha-beta, structu 94.81
2wwq_5234 50S ribosomal protein L1; ribosomal protein, ribon 94.04
3bbo_D352 Ribosomal protein L1; large ribosomal subunit, spi 93.1
3j21_A216 50S ribosomal protein L1P; archaea, archaeal, KINK 92.01
1i2a_A219 50S ribosomal protein L1P; primary rRNA-binding pr 85.86
1mzp_A217 50S ribosomal protein L1P; ribosome, RNA-protein c 85.64
2zkr_5212 60S ribosomal protein L10A; protein-RNA complex, 6 84.14
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A Back     alignment and structure
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Back     alignment and structure
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Back     alignment and structure
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ... Back     alignment and structure
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus} Back     alignment and structure
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2 Back     alignment and structure
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Back     alignment and structure
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A Back     alignment and structure
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus} Back     alignment and structure
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2 Back     alignment and structure
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Back     alignment and structure
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Back     alignment and structure
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 154
d1mzpa_217 e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfo 3e-26
d1i2aa_212 e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Metha 9e-25
d1ad2a_224 e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermo 1e-12
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 217 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 96.7 bits (240), Expect = 3e-26
 Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 3/150 (2%)

Query: 7   DALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKV 65
           ++L EA+  +   ++   KRNFT+++E+ +  K  D +K D +    V LP  P    +V
Sbjct: 6   ESLIEALK-LALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRV 64

Query: 66  CMLGDAQHVEEAEKIGLD-YMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLL 124
            ++  ++ +E A+K      +  E L+KL   K+ VKKLA++   FL ++  +    R+L
Sbjct: 65  LVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRIL 124

Query: 125 GPGLNKAGNSLPLLLTKNPWSPKSTRLRQQ 154
           GP L   G     L      S    R ++ 
Sbjct: 125 GPALGPRGKFPTPLPNTADISEYINRFKRS 154
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 212 Back     information, alignment and structure
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} Length = 224 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query154
d1i2aa_212 Ribosomal protein L1 {Archaeon Methanococcus janna 100.0
d1mzpa_217 Ribosomal protein L1 {Archaeon Sulfolobus acidocal 100.0
d1ad2a_224 Ribosomal protein L1 {Thermus thermophilus [TaxId: 100.0
d1mzpa_217 Ribosomal protein L1 {Archaeon Sulfolobus acidocal 92.97
d1i2aa_212 Ribosomal protein L1 {Archaeon Methanococcus janna 90.67
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.8e-43  Score=279.33  Aligned_cols=147  Identities=29%  Similarity=0.455  Sum_probs=141.0

Q ss_pred             ccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCC-CCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHcCC
Q 031726            4 LQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGL   82 (154)
Q Consensus         4 ~~~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~-~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~aGa   82 (154)
                      ||+|+|.+||+++++..   ++|||+||||++|+|+|+|+++ ++++||+|.|||++|++.+|||||+++++++|+++||
T Consensus         1 ~~~~~~~~ai~~~~~~~---k~rkF~esvel~i~Lk~iD~kk~d~~irg~v~LPh~~gk~~kV~Vf~~~e~~~~Ak~aga   77 (212)
T d1i2aa_           1 MDREALLQAVKEARELA---KPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGL   77 (212)
T ss_dssp             CCHHHHHHHHHHHHHHS---CCCSSCCEEEEEEEESSCCTTSGGGCCEEEEECTTCCSSCCCEEEECCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhC---CccCCCceEEEEEecCCCCCCcccceeeeEeeCCCCCCCcceEEEEechhhHHHhhhccc
Confidence            68999999999999876   6789999999999999999997 8999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCCCCChHHHHHHHhc
Q 031726           83 DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTKNPWSPKSTRLRQ  153 (154)
Q Consensus        83 ~~vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~~~dl~~~i~~~k~  153 (154)
                      ++||++||.+++++++.+++++.+||+|||||+|||.|+++||+.|+|+++||++++++.|+.++|+++++
T Consensus        78 ~~vg~~el~~~~~~~~~~kk~~~~~D~~iat~~~m~~l~k~lgkiLGpkglmP~p~~~t~di~~~v~~~k~  148 (212)
T d1i2aa_          78 TVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKK  148 (212)
T ss_dssp             EEECHHHHHHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEECTTCCCHHHHHHHHT
T ss_pred             cccCcHHHHHHHhhhhhhhcccccCCeEEecchHHHHHHHHhhhhhhhhhccccCCcccchhhHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999875
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure