Citrus Sinensis ID: 031744

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
MATIKFKLAIVLSLCLIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFASSVADS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEccccccccEEEEEEEEEEccEEcccEEEEEEEEcEEEEcccccccccccccccccccEEEEEEEEEccccccEEEEEEEEEEEccccEEEEEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHccccccEEcccccccEEEEEEEEEcccccccccEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEcccccHHcccccccccccEEEEEEEEcccccccccEEEEEEEEEcccccEEEEEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
MATIKFKLAIVLSLCLIVDLaratdvkycdknadydvkvhgvdispypvargreatfsisATTDKAISGGKLVIDVSyfgwhihsethdlcdetscpvstgdFVVAhsqvlpgftppgtyslkmkmYDATKKQVLTCITFDFSIGFASSVADS
Flexible Loop (DISEMBL)
MATIKFKLAIVLSLCLIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISattdkaisgGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFASSVADS
Low Complexity Region (SEG)
MATIKFKLAIVLSLCLIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFASSVADS
Disordered region (IsUnstruct)
***IKFKLAIVLSLCLIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFA******
Disordered Region (DISOPRED)
****KFKLAIVLSLCLIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFA******
Disordered Region (DISEMBL)
MATIKFKLAIVLSLCLIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFASSVADS
Disordered Region (DISPRO)
*ATIKFKLAIVLSLCLIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFAS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATIKFKLAIVLSLCLIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFASSVADS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	153	2.2.26 [Sep-21-2011]
Q54SW1	145	Putative phosphatidylglyc	yes	no	0.888	0.937	0.316	1e-14
Q7RZ85	177	Phosphatidylglycerol/phos	N/A	no	0.790	0.683	0.274	3e-08
Q5A8A2	192	Phosphatidylglycerol/phos	N/A	no	0.738	0.588	0.275	8e-08
O94183	175	Phosphatidylglycerol/phos	yes	no	0.732	0.64	0.268	1e-07
Q6CHU5	189	Phosphatidylglycerol/phos	yes	no	0.823	0.666	0.266	1e-07
Q6BV42	196	Phosphatidylglycerol/phos	yes	no	0.712	0.556	0.296	1e-07
Q756Q3	213	Phosphatidylglycerol/phos	yes	no	0.732	0.525	0.272	3e-07
Q6CNE0	173	Phosphatidylglycerol/phos	yes	no	0.718	0.635	0.266	4e-07
Q12408	173	Phosphatidylglycerol/phos	yes	no	0.666	0.589	0.276	6e-07
Q54YD2	141	Putative phosphatidylglyc	no	no	0.633	0.687	0.264	1e-06

>sp|Q54SW1|Y2179_DICDI Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Dictyostelium discoideum GN=DDB_G0282179 PE=3 SV=2

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 6/142 (4%)

Query: 4   IKFKLAIVLSLCLIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATT 63
           IK  L ++++  LI+ +       YCD N +   K++ + + P P   G+E T S+  + 
Sbjct: 2   IKTILLLLINFMLIL-IVNGDIWNYCDGNINPTFKINKLTLLPDPPLVGKEVTISLEGSL 60

Query: 64  DKAISGGKLVIDVSYF---GWHIHSETH-DLCDETSCPVSTGDFVVAHSQVLPGFTPPGT 119
           ++ I+ G  + +V++F   GW      H D+C   SCPVS G F  + S  +P FTP G 
Sbjct: 61  NEQITSGSSIFNVAFFINGGWRQLPTFHNDICKVLSCPVSAGPFTYSTSIKVPIFTPHGQ 120

Query: 120 YSLKMKMYDATKKQVLTCITFD 141
           Y  ++ + D + + V TC+TF 
Sbjct: 121 YKGQLTLTDQSNRNV-TCLTFQ 141

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.
Dictyostelium discoideum (taxid: 44689)

>sp|Q7RZ85|NPC2_NEUCR Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=npc-2 PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 10/131 (7%)

Query: 18  VDLARATDVKYCDKNADYD---VKVHGVDISPYPVARGREATFSISATTDKAISGGKLV- 73
           +D+   + +++CD  AD     V +  V ++P P   G+  T   S    +AI  G  V 
Sbjct: 32  LDVPGKSPLRFCDAAADRKDDIVTIEEVILTPNPPEAGQTLTIEASGIVKEAIEEGAYVN 91

Query: 74  IDVSYFGWHIHSETHDLCDET-----SCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYD 128
           + V Y    + + + DLC E       CP+  G   +  +  LP   PPG Y+++  +Y+
Sbjct: 92  LQVKYGYIRLINTSADLCKEMKNVELECPIKKGRLSITKNVELPKEIPPGKYTVEADVYN 151

Query: 129 ATKKQVLTCIT 139
           +  K + TC+T
Sbjct: 152 SDDKHI-TCLT 161

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q5A8A2|NPC2_CANAL Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=NPC2 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 7/120 (5%)

Query: 26  VKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLV-IDVSYFGWHIH 84
           ++ CD +    + +  V ++P P   G+  TF+   T DK I  G  V ++V Y    + 
Sbjct: 66  IEVCDASEKQLLHLDEVIVTPNPPVAGQNLTFTAVGTLDKTIEEGAYVEVEVRYGFIKLI 125

Query: 85  SETHDLCDET-----SCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCIT 139
            +T+DLC+E       CP+ +G   +  +  +P   PPG Y +  + Y     + +TC+T
Sbjct: 126 HQTYDLCEEIVKVDLQCPIKSGKQTITKNVEIPEEVPPGKYLVVARAY-TKDDEYITCLT 184

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|O94183|NPC2_ASPOR Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=pltp PE=1 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 7/119 (5%)

Query: 26  VKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVI-DVSYFGWHIH 84
           ++YC+  +   + +  VD+SP P   G+    + S T  + I  G  V+ +V Y    + 
Sbjct: 47  LEYCNDPSGDILDIKQVDLSPNPPLPGKTLAITASGTLREKIEDGAYVLLEVKYGLITLV 106

Query: 85  SETHDLCD-----ETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCI 138
            +T DLC+     E  CP+  GD  +     LP   PPG Y+++  ++++  + + TC+
Sbjct: 107 RQTADLCEQLVNVELKCPLGPGDMTLTKQVDLPKQIPPGKYTVQADVFNSDGEHI-TCL 164

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q6CHU5|NPC2_YARLI Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NPC2 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 9/135 (6%)

Query: 19  DLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLV-IDVS 77
           D+   + +  CD   +  +++  + I P P A+G+  T   S    + +  G  + ++V 
Sbjct: 55  DIPGDSPISLCDAEYEQLLEIKHLSIDPNPPAKGQNLTIEASGYLYEDVEEGAYIEVEVR 114

Query: 78  YFGWHIHSETHDLCDET-----SCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMY---DA 129
           Y    + S+T DLC+++     SCP+  GD  +     LP   PPG Y    + Y   D 
Sbjct: 115 YGYIRLISQTLDLCEQSEQVDWSCPIKAGDLKLNKQIELPNEIPPGKYVAVARAYTVDDD 174

Query: 130 TKKQVLTCITFDFSI 144
               +LT +TF  S+
Sbjct: 175 LITCLLTTVTFPASL 189

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q6BV42|NPC2_DEBHA Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=NPC2 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 9/118 (7%)

Query: 29  CDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLV-IDVSYFGWHIHSET 87
           C+ +    + +  V I P P  RG   TF       + I  G  V +DV Y    +  +T
Sbjct: 73  CEASVPQLLNLQSVVIDPNPPLRGENLTFVAKGVLSQDIEDGAYVEVDVRYGFIKLLHQT 132

Query: 88  HDLCDETS-----CPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQV-LTCIT 139
            DLC+E +     CP+S G  V+     +P   PPG Y +  + Y  TK  + +TC++
Sbjct: 133 FDLCEEITKIDLECPISKGQQVIEKKVEIPAEVPPGKYIVSARAY--TKDDIFITCLS 188

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q756Q3|NPC2_ASHGO Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NPC2 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 9/121 (7%)

Query: 29  CDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGW-HIHSET 87
           CD + D+ + V  ++I+P P  RG+  T          +  G  V      G+  + SET
Sbjct: 50  CDLDEDHLLDVQEIEITPNPPHRGKNLTVEARGDLFGPVEDGAYVTVEVRLGYIKLLSET 109

Query: 88  HDLCDETS-------CPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITF 140
            DLC E         CP+  G++ ++ +  +P   PPG Y +  + Y     + +TC+T 
Sbjct: 110 FDLCKELEENDLGLQCPLEEGEYELSKTVEIPQQVPPGRYHVVARAY-TVDDEPITCLTG 168

Query: 141 D 141
           D
Sbjct: 169 D 169

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q6CNE0|NPC2_KLULA Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=NPC2 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 10/120 (8%)

Query: 29  CDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLV-IDVSYFGWHIHSET 87
           CD +    + V  V++ P P  RG   T + +      I  G  + I+V      + S+T
Sbjct: 47  CDVDQSQSLDVTQVNLVPNPPQRGENLTIAAAGVLQTTIEEGAYIDIEVRLGYIKLISQT 106

Query: 88  HDLCDETS--------CPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCIT 139
           +DLC++          CP+  G + +     +P   PPG YS+  + Y+   +Q+ TC+T
Sbjct: 107 YDLCEQLEENDIDGLKCPIEEGVYELNKIVEIPSEVPPGKYSVIARAYNVDDEQI-TCLT 165

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q12408|NPC2_YEAST Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NPC2 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 10/112 (8%)

Query: 37  VKVHGVDISPYPVARGREATFSISATTDKAISGGKLV-IDVSYFGWHIHSETHDLCDET- 94
           V++  V++ P P  RG   T S +    + I  G  + ++V      + S+T DLC+   
Sbjct: 55  VEIKEVNLDPNPPVRGENLTISANGEVFETIEEGAYIDVEVRLGYIRLLSQTFDLCETLE 114

Query: 95  -------SCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCIT 139
                  SCP+  G++ +     +PG  PPG Y +  + Y   K  ++TC+T
Sbjct: 115 DNDIEGLSCPIEPGEYNIKKIVEIPGEVPPGKYVVVARAY-TEKDDLITCLT 165

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q54YD2|Y8295_DICDI Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0278295 OS=Dictyostelium discoideum GN=DDB_G0278295 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 5/102 (4%)

Query: 46  PYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLC---DETSCPVSTGD 102
           P PV +G++ T S S   D+ ++GG + + V Y    + +E   +C   D  +CP++ GD
Sbjct: 42  PTPV-KGQDITISASGILDETVTGGNVAVKVKYGFITLINENVSICSSQDPLACPIAAGD 100

Query: 103 FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSI 144
           +    ++++P   P G Y+  + + D    ++  CI  D ++
Sbjct: 101 YQKNMTEMIPSDAPSGKYTGNVVITDQNNAEI-ACIDVDINL 141

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
255566183	155	Phosphatidylglycerol/phosphatidylinosito	0.993	0.980	0.762	8e-63
351723665	154	uncharacterized protein LOC100306050 pre	0.915	0.909	0.751	2e-57
388502424	152	unknown [Lotus japonicus]	0.986	0.993	0.697	9e-56
388516113	152	unknown [Lotus japonicus]	0.986	0.993	0.684	4e-55
18399355	153	MD-2-related lipid recognition domain-co	0.888	0.888	0.737	2e-54
21554315	153	unknown [Arabidopsis thaliana]	0.888	0.888	0.737	3e-54
225439366	154	PREDICTED: putative phosphatidylglycerol	0.836	0.831	0.775	2e-53
297833968	153	hypothetical protein ARALYDRAFT_478524 [	0.888	0.888	0.737	1e-52
334185263	171	MD-2-related lipid recognition domain-co	0.901	0.807	0.643	3e-51
297810751	153	hypothetical protein ARALYDRAFT_349912 [	0.888	0.888	0.678	9e-49

>gi|255566183|ref|XP_002524079.1| Phosphatidylglycerol/phosphatidylinositol transfer protein precursor, putative [Ricinus communis] gi|223536647|gb|EEF38289.1| Phosphatidylglycerol/phosphatidylinositol transfer protein precursor, putative [Ricinus communis]

 Score =  244 bits (623), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 119/156 (76%), Positives = 134/156 (85%), Gaps = 4/156 (2%)

Query: 1   MATIKFKLAI---VLSLCLIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATF 57
           MA I++K  +   +LSLCLIV   RATDV+YCDK ADYDVKV GV+ISP PV RG++ATF
Sbjct: 1   MAIIEYKPVLSVFLLSLCLIVPFTRATDVRYCDKKADYDVKVKGVEISPNPVVRGQQATF 60

Query: 58  SISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPP 117
           SISA+T KAISGGKL+I+VSYFGWHIHSETHDLCDETSCPVS G+F+V+HSQVLPGFTPP
Sbjct: 61  SISASTGKAISGGKLIIEVSYFGWHIHSETHDLCDETSCPVSDGNFIVSHSQVLPGFTPP 120

Query: 118 GTYSLKMKMYDATKKQVLTCITFDFSIGFASSVADS 153
           G+YSL MKMYD  KK  LTCI FDFSIGFASSV DS
Sbjct: 121 GSYSLTMKMYDG-KKHELTCIAFDFSIGFASSVQDS 155

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723665|ref|NP_001236775.1| uncharacterized protein LOC100306050 precursor [Glycine max] gi|255627393|gb|ACU14041.1| unknown [Glycine max]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/141 (75%), Positives = 122/141 (86%), Gaps = 1/141 (0%)

Query: 13  SLCLIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKL 72
           +LCL+   + ATD+ YCDK ADYDV+V GV+ISP P+ARG+ ATFSI+ATT KA+SGGKL
Sbjct: 15  TLCLLYGFSNATDIHYCDKKADYDVEVKGVEISPDPIARGQPATFSIAATTGKALSGGKL 74

Query: 73  VIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKK 132
           VIDVSYFGWHIHSETHDLC ET+CPVS GDFV+AHSQVLPGFTPPG+Y+LKMKM+D  K 
Sbjct: 75  VIDVSYFGWHIHSETHDLCGETTCPVSAGDFVIAHSQVLPGFTPPGSYTLKMKMFDGNKH 134

Query: 133 QVLTCITFDFSIGFASSVADS 153
           + LTCITF F IGF SSVADS
Sbjct: 135 E-LTCITFGFDIGFGSSVADS 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502424|gb|AFK39278.1| unknown [Lotus japonicus]

 Score =  221 bits (562), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 106/152 (69%), Positives = 121/152 (79%), Gaps = 1/152 (0%)

Query: 1   MATIKFKLAIVLSLCLIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSIS 60
           M   KF L    +LCL+   A ATDV YCDK ADYDV+V GV+ISP PVARG+ ATFSI+
Sbjct: 1   MEIKKFNLLFFSTLCLLHAFATATDVHYCDKKADYDVEVKGVEISPDPVARGQPATFSIA 60

Query: 61  ATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTY 120
           A T +A+SGGKLVIDVSYFGWH++SETHDLC ET CPVS GDFV+AHSQVLPGFTPPG+Y
Sbjct: 61  AATSQALSGGKLVIDVSYFGWHVYSETHDLCGETPCPVSAGDFVIAHSQVLPGFTPPGSY 120

Query: 121 SLKMKMYDATKKQVLTCITFDFSIGFASSVAD 152
           +L MKMYD  K + LTC+ F F IGF SSVAD
Sbjct: 121 ALTMKMYDGNKHE-LTCVKFGFDIGFGSSVAD 151

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516113|gb|AFK46118.1| unknown [Lotus japonicus]

 Score =  219 bits (557), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 121/152 (79%), Gaps = 1/152 (0%)

Query: 1   MATIKFKLAIVLSLCLIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSIS 60
           M   KF L    +LCL+   A ATDV YCDK ADYDV+V GV+ISP PVARG+ ATFSI+
Sbjct: 1   MEIKKFNLLFFSTLCLLHAFATATDVHYCDKKADYDVEVKGVEISPDPVARGQPATFSIA 60

Query: 61  ATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTY 120
           A T +A+SGGKLVID+SYFGWH++SETHDLC ET CPVS G+FV+AHSQVLPGFTPPG+Y
Sbjct: 61  AATSQALSGGKLVIDLSYFGWHVYSETHDLCGETPCPVSAGNFVIAHSQVLPGFTPPGSY 120

Query: 121 SLKMKMYDATKKQVLTCITFDFSIGFASSVAD 152
           +L MKMYD  K + LTC+ F F IGF SSVAD
Sbjct: 121 ALTMKMYDGNKHE-LTCVKFGFDIGFGSSVAD 151

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399355|ref|NP_566400.1| MD-2-related lipid recognition domain-containing protein [Arabidopsis thaliana] gi|6671934|gb|AAF23194.1|AC016795_7 unknown protein [Arabidopsis thaliana] gi|14334430|gb|AAK59413.1| unknown protein [Arabidopsis thaliana] gi|28393843|gb|AAO42329.1| unknown protein [Arabidopsis thaliana] gi|332641577|gb|AEE75098.1| MD-2-related lipid recognition domain-containing protein [Arabidopsis thaliana]

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/137 (73%), Positives = 113/137 (82%), Gaps = 1/137 (0%)

Query: 16  LIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVID 75
           L+  +  ATDV YCD N +Y+VKV GVDI+PYP+ARG  ATF ISA TD  IS GKLVI+
Sbjct: 17  LVSTIVAATDVHYCDNNEEYEVKVQGVDITPYPIARGEPATFRISANTDTEISSGKLVIE 76

Query: 76  VSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVL 135
           VSYFGWHIHSETHDLCDETSCPV+ GDF+VAHSQVLPG+TPPG+YSLKMKM D  KK+ L
Sbjct: 77  VSYFGWHIHSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPGSYSLKMKMLDGRKKE-L 135

Query: 136 TCITFDFSIGFASSVAD 152
           TCI F F IGF SSVAD
Sbjct: 136 TCIKFSFDIGFGSSVAD 152

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554315|gb|AAM63420.1| unknown [Arabidopsis thaliana]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 101/137 (73%), Positives = 113/137 (82%), Gaps = 1/137 (0%)

Query: 16  LIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVID 75
           L+  +  ATDV YCD N +Y+VKV GVDI+PYP+ARG  ATF ISA TD  IS GKLVI+
Sbjct: 17  LVSTIVAATDVHYCDNNEEYEVKVQGVDITPYPIARGEPATFRISANTDTKISSGKLVIE 76

Query: 76  VSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVL 135
           VSYFGWHIHSETHDLCDETSCPV+ GDF+VAHSQVLPG+TPPG+YSLKMKM D  KK+ L
Sbjct: 77  VSYFGWHIHSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPGSYSLKMKMLDGRKKE-L 135

Query: 136 TCITFDFSIGFASSVAD 152
           TCI F F IGF SSVAD
Sbjct: 136 TCIKFSFDIGFGSSVAD 152

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439366|ref|XP_002271535.1| PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 isoform 1 [Vitis vinifera] gi|147819263|emb|CAN73359.1| hypothetical protein VITISV_026937 [Vitis vinifera] gi|296089354|emb|CBI39126.3| unnamed protein product [Vitis vinifera]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/129 (77%), Positives = 112/129 (86%), Gaps = 1/129 (0%)

Query: 25  DVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIH 84
           DV YCDKNADYDV V GV+ISPYPV RG  ATFSISA T + I+GGKLVIDVSYFGWHIH
Sbjct: 27  DVTYCDKNADYDVTVQGVEISPYPVVRGSPATFSISANTGETITGGKLVIDVSYFGWHIH 86

Query: 85  SETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSI 144
           SETHDLC+E+SCPVS+GDFV++H+QVLPGFTPPGTY+LKMK+ D   K+ LTCI FDFSI
Sbjct: 87  SETHDLCEESSCPVSSGDFVISHTQVLPGFTPPGTYNLKMKLVDKKNKE-LTCIGFDFSI 145

Query: 145 GFASSVADS 153
           GF S VADS
Sbjct: 146 GFVSPVADS 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833968|ref|XP_002884866.1| hypothetical protein ARALYDRAFT_478524 [Arabidopsis lyrata subsp. lyrata] gi|297330706|gb|EFH61125.1| hypothetical protein ARALYDRAFT_478524 [Arabidopsis lyrata subsp. lyrata]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/137 (73%), Positives = 111/137 (81%), Gaps = 1/137 (0%)

Query: 16  LIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVID 75
           L+  +  ATDV YCD N +Y+VKV GVDI P PVARG  ATFSISA TD  IS GKLVI+
Sbjct: 17  LVSTIVAATDVHYCDNNEEYEVKVQGVDIIPDPVARGAPATFSISANTDTEISSGKLVIE 76

Query: 76  VSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVL 135
           VSYFGWHIHSETH+LCDETSCPV+ GDFVV HSQVLPG+TPPG+YSLKMKM D  KK+ L
Sbjct: 77  VSYFGWHIHSETHELCDETSCPVAVGDFVVEHSQVLPGYTPPGSYSLKMKMLDGRKKE-L 135

Query: 136 TCITFDFSIGFASSVAD 152
           TCI F F IGF SSVAD
Sbjct: 136 TCIKFSFEIGFLSSVAD 152

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185263|ref|NP_001189862.1| MD-2-related lipid recognition domain-containing protein [Arabidopsis thaliana] gi|332641578|gb|AEE75099.1| MD-2-related lipid recognition domain-containing protein [Arabidopsis thaliana]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/157 (64%), Positives = 113/157 (71%), Gaps = 19/157 (12%)

Query: 14  LCLIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLV 73
             L+  +  ATDV YCD N +Y+VKV GVDI+PYP+ARG  ATF ISA TD  IS GKLV
Sbjct: 15  FLLVSTIVAATDVHYCDNNEEYEVKVQGVDITPYPIARGEPATFRISANTDTEISSGKLV 74

Query: 74  IDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPP---------------- 117
           I+VSYFGWHIHSETHDLCDETSCPV+ GDF+VAHSQVLPG+TPP                
Sbjct: 75  IEVSYFGWHIHSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPTEKRFNLVSIAYYEFH 134

Query: 118 --GTYSLKMKMYDATKKQVLTCITFDFSIGFASSVAD 152
             G+YSLKMKM D  KK+ LTCI F F IGF SSVAD
Sbjct: 135 VEGSYSLKMKMLDGRKKE-LTCIKFSFDIGFGSSVAD 170

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810751|ref|XP_002873259.1| hypothetical protein ARALYDRAFT_349912 [Arabidopsis lyrata subsp. lyrata] gi|297319096|gb|EFH49518.1| hypothetical protein ARALYDRAFT_349912 [Arabidopsis lyrata subsp. lyrata]

 Score =  197 bits (502), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 93/137 (67%), Positives = 109/137 (79%), Gaps = 1/137 (0%)

Query: 16  LIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVID 75
            +  + +A DV YC++NA Y+VKV  VDISP P+A G  ATF+ISA T   IS GKLVI+
Sbjct: 17  FVSPIVQAIDVHYCEENAKYEVKVKEVDISPNPIAPGEPATFTISANTGHEISFGKLVIE 76

Query: 76  VSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVL 135
           VSYFGWH+HSETHDLC ET+CP+ TGDF+VAHSQVLPG+TPPG+YSLKMKM DA KK+ L
Sbjct: 77  VSYFGWHVHSETHDLCTETTCPIQTGDFLVAHSQVLPGYTPPGSYSLKMKMLDAQKKE-L 135

Query: 136 TCITFDFSIGFASSVAD 152
           TCI F F IG  SSVAD
Sbjct: 136 TCIKFAFDIGLRSSVAD 152

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
TAIR|locus:2144078	153	AT5G06480 "AT5G06480" [Arabido	0.934	0.934	0.668	2.9e-48
TAIR|locus:2081368	152	AT3G44100 "AT3G44100" [Arabido	0.915	0.921	0.538	3.2e-33
DICTYBASE|DDB_G0282179	145	DDB_G0282179 "ML domain-contai	0.882	0.931	0.319	2e-15
TAIR|locus:505006248	160	AT2G16005 "AT2G16005" [Arabido	0.954	0.912	0.301	2.2e-11
CGD|CAL0003259	192	orf19.3226 [Candida albicans (	0.725	0.578	0.311	4.1e-10
UNIPROTKB|Q5A8A2	192	NPC2 "Phosphatidylglycerol/pho	0.725	0.578	0.311	4.1e-10
DICTYBASE|DDB_G0278295	141	DDB_G0278295 "ML domain-contai	0.882	0.957	0.237	5.9e-09
DICTYBASE|DDB_G0282107	147	DDB_G0282107 "putative phospho	0.908	0.945	0.268	7.6e-09
SGD|S000002204	173	NPC2 "Functional homolog of hu	0.712	0.630	0.297	1.6e-08
UNIPROTKB|Q52FS9	178	NPC2 "Phosphatidylglycerol/pho	0.738	0.634	0.280	3.3e-08

TAIR|locus:2144078 AT5G06480 "AT5G06480" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 97/145 (66%), Positives = 114/145 (78%)

Query:     8 LAIVLSLCLIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAI 67
             LA V  L L+  +  A DV YC++NA+Y+VKV  VDISP P+A G  ATF+ISA T + I
Sbjct:    10 LAAVFLLLLVSPIV-AIDVHYCEENAEYEVKVKEVDISPNPIAPGEPATFTISANTGREI 68

Query:    68 SGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMY 127
             S GKLVI+VSYFGWH+HSETHDLC ETSCP+ TGDF+VAHSQVLPG+TPPG+Y LKMKM 
Sbjct:    69 SFGKLVIEVSYFGWHVHSETHDLCTETSCPIQTGDFLVAHSQVLPGYTPPGSYLLKMKML 128

Query:   128 DATKKQVLTCITFDFSIGFASSVAD 152
             DA KK+ LTCI F F IG  +SVAD
Sbjct:   129 DAKKKE-LTCIKFSFDIGLRASVAD 152

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2081368 AT3G44100 "AT3G44100" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 77/143 (53%), Positives = 95/143 (66%)

Query:     8 LAIVLSLCLIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAI 67
             L ++LS+  +  L  AT   YCDK  D  VKV GV ISP PV  G  ATF I  +T + I
Sbjct:    10 LLLLLSVFFLPAL-HATSFTYCDKRLD-PVKVTGVKISPDPVVSGAAATFKIFGSTGEDI 67

Query:    68 SGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMY 127
             SGGK+VI V Y G  +H+ETHDLCDET+CPV+ G FV++HSQ LP  TPPGTY+LKM + 
Sbjct:    68 SGGKVVIRVLYVGIPVHTETHDLCDETACPVAPGSFVLSHSQTLPSITPPGTYTLKMTIN 127

Query:   128 DATKKQVLTCITFDFSIGFASSV 150
             D    + LTCI+F F I   S+V
Sbjct:   128 DKNGGR-LTCISFKFKITVGSAV 149

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

DICTYBASE|DDB_G0282179 DDB_G0282179 "ML domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 45/141 (31%), Positives = 75/141 (53%)

Query:     4 IKFKLAIVLSLCLIVDLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATT 63
             IK  L ++++  LI+ +       YCD N +   K++ + + P P   G+E T S+  + 
Sbjct:     2 IKTILLLLINFMLIL-IVNGDIWNYCDGNINPTFKINKLTLLPDPPLVGKEVTISLEGSL 60

Query:    64 DKAISGGKLVIDVSYF---GWHIHSETH-DLCDETSCPVSTGDFVVAHSQVLPGFTPPGT 119
             ++ I+ G  + +V++F   GW      H D+C   SCPVS G F  + S  +P FTP G 
Sbjct:    61 NEQITSGSSIFNVAFFINGGWRQLPTFHNDICKVLSCPVSAGPFTYSTSIKVPIFTPHGQ 120

Query:   120 YSLKMKMYDATKKQVLTCITF 140
             Y  ++ + D + + V TC+TF
Sbjct:   121 YKGQLTLTDQSNRNV-TCLTF 140

GO:0006869 "lipid transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

TAIR|locus:505006248 AT2G16005 "AT2G16005" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 48/159 (30%), Positives = 79/159 (49%)

Query:     1 MATIKFKLAIVLSLCLIVDLARA-TDVKYCDKNADYDVKVHGVDISPYPVARGREATFSI 59
             MA    +L ++L + L    A      + CD   +Y +KV  V+ISP PV R      +I
Sbjct:     1 MAISHTQLLLLLLVSLFFSPALCGPKFQTCDTGKEYPLKVSSVEISPDPVKRSGNGEITI 60

Query:    60 SATTDKAISGGKLV-IDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPG-FTPP 117
             +  T+K IS G  V + ++   + + ++++ LCD T+CPV+ G  V+     LP  FTP 
Sbjct:    61 TGVTNKEISDGVTVNLKLAVGMFPVSTKSYSLCDITACPVAPGPIVLT----LPNIFTPR 116

Query:   118 GT-----YSLKMKMYDATKKQVLTCITFDFSI-GFASSV 150
                    Y++ + + D   K+ + CI F   + G AS +
Sbjct:   117 EKRTAIGYTIIISITDKPLKESMMCILFVVKLTGHASMI 155

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

CGD|CAL0003259 orf19.3226 [Candida albicans (taxid:5476)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 38/122 (31%), Positives = 62/122 (50%)

Query:    26 VKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLV-IDVSY-FGWHI 83
             ++ CD +    + +  V ++P P   G+  TF+   T DK I  G  V ++V Y F   I
Sbjct:    66 IEVCDASEKQLLHLDEVIVTPNPPVAGQNLTFTAVGTLDKTIEEGAYVEVEVRYGFIKLI 125

Query:    84 HSETHDLCDET-----SCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKK-QVLTC 137
             H +T+DLC+E       CP+ +G   +  +  +P   PPG Y +  + Y  TK  + +TC
Sbjct:   126 H-QTYDLCEEIVKVDLQCPIKSGKQTITKNVEIPEEVPPGKYLVVARAY--TKDDEYITC 182

Query:   138 IT 139
             +T
Sbjct:   183 LT 184

GO:0003674 "molecular_function" evidence=ND

GO:0000328 "fungal-type vacuole lumen" evidence=IEA

GO:0032366 "intracellular sterol transport" evidence=IEA

UNIPROTKB|Q5A8A2 NPC2 "Phosphatidylglycerol/phosphatidylinositol transfer protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 38/122 (31%), Positives = 62/122 (50%)

Query:    26 VKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLV-IDVSY-FGWHI 83
             ++ CD +    + +  V ++P P   G+  TF+   T DK I  G  V ++V Y F   I
Sbjct:    66 IEVCDASEKQLLHLDEVIVTPNPPVAGQNLTFTAVGTLDKTIEEGAYVEVEVRYGFIKLI 125

Query:    84 HSETHDLCDET-----SCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKK-QVLTC 137
             H +T+DLC+E       CP+ +G   +  +  +P   PPG Y +  + Y  TK  + +TC
Sbjct:   126 H-QTYDLCEEIVKVDLQCPIKSGKQTITKNVEIPEEVPPGKYLVVARAY--TKDDEYITC 182

Query:   138 IT 139
             +T
Sbjct:   183 LT 184

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0278295 DDB_G0278295 "ML domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 34/143 (23%), Positives = 69/143 (48%)

Query:     8 LAIVLSLCLIVDLARA--TDV-KYCDKNADYDVKVHGVDISPYPVARGREATFSISATTD 64
             + ++L+L  ++ L     T V   C   AD   ++  V + P    +G++ T S S   D
Sbjct:     1 MRLLLALFFVLALVSPSFTQVWSNCGTAAD-KFQITNVVLDPPTPVKGQDITISASGILD 59

Query:    65 KAISGGKLVIDVSYFGWHIHSETHDLC---DETSCPVSTGDFVVAHSQVLPGFTPPGTYS 121
             + ++GG + + V Y    + +E   +C   D  +CP++ GD+    ++++P   P G Y+
Sbjct:    60 ETVTGGNVAVKVKYGFITLINENVSICSSQDPLACPIAAGDYQKNMTEMIPSDAPSGKYT 119

Query:   122 LKMKMYDATKKQVLTCITFDFSI 144
               + + D    ++  CI  D ++
Sbjct:   120 GNVVITDQNNAEI-ACIDVDINL 141

GO:0005615 "extracellular space" evidence=IDA

GO:0006869 "lipid transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0282107 DDB_G0282107 "putative phospholipid transfer protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 40/149 (26%), Positives = 67/149 (44%)

Query:     4 IKFKLAI-VLSLCLIVDLARAT---DV-KYCDKNADYDVKVHGVDISPYPVARGREATFS 58
             +K KL + + S+ +++  A A    D+ K C K+ D   ++  V ISP P  RG+  +  
Sbjct:     1 MKQKLLLFIFSILILLIAAEAKMFKDIWKSCGKSTD-TFQIKNVTISPDPPVRGQTVSIY 59

Query:    59 ISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETS---CPVSTGDFVVAHSQVLPGFT 115
              S      ISGG + I + +    I  ET  +C   +   CP+  GD+  +    +P   
Sbjct:    60 ASGELKDTISGGDVNIQIKFGIITIIRETKPICSSDNPFPCPIQPGDYTHSVDIAIPDNA 119

Query:   116 PPGTYSLKMKMYDATKKQVLTCITFDFSI 144
             P G YS    + D    ++  CI  +  +
Sbjct:   120 PRGKYSGNFVLTDQANDEI-ACINVNMQL 147

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0006869 "lipid transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

SGD|S000002204 NPC2 "Functional homolog of human NPC2/He1" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 36/121 (29%), Positives = 56/121 (46%)

Query:    29 CDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSY-FGW-HIHSE 86
             CD      V++  V++ P P  RG   T S +    + I  G   IDV    G+  + S+
Sbjct:    47 CDILDKQLVEIKEVNLDPNPPVRGENLTISANGEVFETIEEGAY-IDVEVRLGYIRLLSQ 105

Query:    87 THDLCDET--------SCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCI 138
             T DLC+          SCP+  G++ +     +PG  PPG Y +  + Y   K  ++TC+
Sbjct:   106 TFDLCETLEDNDIEGLSCPIEPGEYNIKKIVEIPGEVPPGKYVVVARAY-TEKDDLITCL 164

Query:   139 T 139
             T
Sbjct:   165 T 165

GO:0003674 "molecular_function" evidence=ND

GO:0000328 "fungal-type vacuole lumen" evidence=IDA

GO:0000324 "fungal-type vacuole" evidence=IDA

GO:0005773 "vacuole" evidence=IEA

GO:0032366 "intracellular sterol transport" evidence=IGI;ISS

GO:0006869 "lipid transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|Q52FS9 NPC2 "Phosphatidylglycerol/phosphatidylinositol transfer protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 34/121 (28%), Positives = 54/121 (44%)

Query:    26 VKYCDKNADYDV-KVHGVDISPYPVARGREATFSISA-TTDKAISGGKLVIDVSYFGWHI 83
             +K CD +   D+ K+  VD+SP P   G       S   T K   G  + + V Y    +
Sbjct:    42 LKLCDGDHKDDILKITKVDLSPNPPKAGESLVIKASGDVTQKIEEGAYINLSVKYGLIRL 101

Query:    84 HSETHDLCDETS-----CPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCI 138
              +   DLC++       CP+  G   +  S  LP   PPG Y++   +Y    K++ +C+
Sbjct:   102 INTKADLCEQIKNVDLECPIDEGKLDIVKSVDLPNEIPPGKYTVFADVYTKDNKKI-SCL 160

Query:   139 T 139
             T
Sbjct:   161 T 161

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54SW1	Y2179_DICDI	No assigned EC number	0.3169	0.8888	0.9379	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	153
cd00917	122	cd00917, PG-PI_TP, The phosphatidylinositol/phosph	1e-42
smart00737	119	smart00737, ML, Domain involved in innate immunity	7e-28
pfam02221	132	pfam02221, E1_DerP2_DerF2, ML domain	3e-27
pfam06011	531	pfam06011, TRP, Transient receptor potential (TRP)	4e-05

>gnl|CDD|238459 cd00917, PG-PI_TP, The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure

 Score =  137 bits (346), Expect = 1e-42
 Identities = 47/123 (38%), Positives = 67/123 (54%), Gaps = 7/123 (5%)

Query: 26  VKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGG-KLVIDVSYFGWHIH 84
            +YCDK  +  VKV  V+ISP P A G+  T   S +  K I  G  +V++V Y    + 
Sbjct: 1   FEYCDKGGEDIVKVTSVEISPNPPAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLL 60

Query: 85  SETHDLCDET-----SCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCIT 139
           SET+DLCDET     SCP+  GD  +     LPG  PPG Y++  + Y    ++ +TC++
Sbjct: 61  SETYDLCDETKNVDLSCPIEPGDKFLTKLVDLPGEIPPGKYTVSARAYTKDDEE-ITCLS 119

Query: 140 FDF 142
           F  
Sbjct: 120 FSV 122

These proteins belong to the ML domain family. Length = 122

>gnl|CDD|214796 smart00737, ML, Domain involved in innate immunity and lipid metabolism

 Score = 99.7 bits (249), Expect = 7e-28
 Identities = 45/122 (36%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 26  VKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFG--WHI 83
            K C  N     ++  V ISP P  RG+  T SIS T ++ IS  K+V+ V   G    I
Sbjct: 1   FKDCGSN--DPGQISSVSISPCPPVRGKTLTISISFTLNEDISKLKVVVHVKIGGIEVPI 58

Query: 84  HSETHDLCDET--SCPVSTGDFVVAH-SQVLPGFTPPGTYSLKMKMYDATKKQVLTCITF 140
             ET+DLC  T   CP+  G+ V    S  +PG  PPG Y++K ++ D    + L CI F
Sbjct: 59  PGETYDLCKLTGSKCPIEKGETVNYTNSLTVPGIFPPGKYTVKWELTDE-DGEELACINF 117

Query: 141 DF 142
             
Sbjct: 118 TV 119

ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids. Length = 119

>gnl|CDD|216934 pfam02221, E1_DerP2_DerF2, ML domain

 Score = 98.6 bits (246), Expect = 3e-27
 Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 11/132 (8%)

Query: 23  ATDVKYC-DKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVI-----DV 76
           A   + C  K     V V G +ISP P+ RG   T S   T ++ I+    V+      V
Sbjct: 2   AVPFRDCGGKPEPTSVDVSGCEISPCPLVRGTNLTISADFTANQDITKLTAVVVATLLGV 61

Query: 77  SYFGWHIHSETHDLCDE---TSCPVSTGDFVV-AHSQVLPGFTPPGTYSLKMKMYDATKK 132
                 +  ET D C      SCP+  G+ V    S  +P   PPG Y+++ ++YD    
Sbjct: 62  KIPFITLPGETEDACKGLVGLSCPLKKGETVTYTLSVPIPKEYPPGKYTVEAELYDD-DG 120

Query: 133 QVLTCITFDFSI 144
           +VLTC  FD  I
Sbjct: 121 EVLTCFEFDVKI 132

ML domain - MD-2-related lipid recognition domain. This family consists of proteins from plants, animals and fungi, including dust mite allergen Der P 2. It has been implicate in lipid recognition, particularly in the recognition of pathogen related products. A mutation in Npc2 causes a rare form of Niemann-Pick type C2 disease. Length = 132

>gnl|CDD|218853 pfam06011, TRP, Transient receptor potential (TRP) ion channel

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 21/140 (15%)

Query: 19  DLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGG-KLVIDVS 77
                  +  C  N+         D++  P  R     F +  T+   IS      ++V 
Sbjct: 1   RSLATVSLSTCMDNSQITASS--FDVAFDPDNR--TLKFDVDGTSS--ISNKVTAHVEVD 54

Query: 78  YFGWHIHSETHDLCD---ETSCPVSTGDFVVAHSQVLP-GFT---PPGTY-------SLK 123
            +G+++ SET D CD   +  CP+  G+     +Q +   +    P   Y       +++
Sbjct: 55  AYGFNVISETFDPCDMGLKQLCPLPPGNIANNSTQYISESYVSQIPGIAYTIPDLDATVR 114

Query: 124 MKMYDATKKQVLTCITFDFS 143
           + +Y      VL C+    S
Sbjct: 115 VGIYSTDTGTVLACVQATLS 134

This family of proteins are transient receptor potential (TRP) ion channels. They are essential for cellular viability and are involved in cell growth and cell wall synthesis. The genes for these proteins are homologous to polycystic kidney disease related ion channel genes. Length = 531

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
KOG4680	153	consensus Uncharacterized conserved protein, conta	99.97
cd00917	122	PG-PI_TP The phosphatidylinositol/phosphatidylglyc	99.97
smart00737	118	ML Domain involved in innate immunity and lipid me	99.96
PF02221	134	E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The	99.95
cd00918	120	Der-p2_like Several group 2 allergen proteins belo	99.94
cd00916	123	Npc2_like Niemann-Pick type C2 (Npc2) is a lysosom	99.94
cd00912	127	ML The ML (MD-2-related lipid-recognition) domain	99.93
KOG4063	158	consensus Major epididymal secretory protein HE1 [	99.93
cd00915	130	MD-1_MD-2 MD-1 and MD-2 are cofactors required for	99.86
cd00258	162	GM2-AP GM2 activator protein (GM2-AP) is a non-enz	99.84
PF14558	141	TRP_N: ML-like domain	99.08
PF15418	132	DUF4625: Domain of unknown function (DUF4625)	97.28
smart00697	93	DM8 Repeats found in several Drosophila proteins.	96.68
PF14524	142	Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.	95.66
PF02115	200	Rho_GDI: RHO protein GDP dissociation inhibitor; I	95.2
smart00675	164	DM11 Domains in hypothetical proteins in Drosophil	95.14
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	94.42
PF07705	101	CARDB: CARDB; InterPro: IPR011635 The APHP (acidic	94.32
PF06477	81	DUF1091: Protein of unknown function (DUF1091); In	94.28
PF04234	97	CopC: CopC domain; InterPro: IPR007348 CopC is a b	93.51
PRK10301	124	hypothetical protein; Provisional	92.4
PLN02991	543	oxidoreductase	91.62
PLN02354	552	copper ion binding / oxidoreductase	91.4
PLN00044	596	multi-copper oxidase-related protein; Provisional	91.29
KOG3205	200	consensus Rho GDP-dissociation inhibitor [Signal t	90.1
PF00339	149	Arrestin_N: Arrestin (or S-antigen), N-terminal do	88.88
TIGR02186	261	alph_Pro_TM conserved hypothetical protein. This f	88.29
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	88.21
PLN02835	539	oxidoreductase	87.26
PF09608	236	Alph_Pro_TM: Putative transmembrane protein (Alph_	86.4
PLN02168	545	copper ion binding / pectinesterase	84.36
COG1470	513	Predicted membrane protein [Function unknown]	84.25
KOG1263	563	consensus Multicopper oxidases [Secondary metaboli	83.71
COG2372	127	CopC Uncharacterized protein, homolog of Cu resist	82.22
cd00912	127	ML The ML (MD-2-related lipid-recognition) domain	81.37

>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]

Probab=99.97  E-value=5.3e-31  Score=186.62  Aligned_cols=134  Identities=67%  Similarity=1.090  Sum_probs=126.8

Q ss_pred             hhcccccceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEcccCcCCCCCCCCCC
Q 031744           19 DLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETSCPV   98 (153)
Q Consensus        19 ~~~~~~~~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~~~CPl   98 (153)
                      ....++++.+|..+..+.++|+.|+++|+|+.||++++|++.+...+++..|++.+.+.|+||++..+..|+|+.++||+
T Consensus        20 ~i~~a~~~~yCd~~d~~~VkV~~Vni~PnP~a~Ge~aTf~i~~ntg~tIs~Gk~VIeV~y~gi~ihsethDLCdetsCPV   99 (153)
T KOG4680|consen   20 PINGATPVHYCDINDEYEVKVKEVNISPNPPARGENATFSISGNTGETISEGKYVIEVSYGGIRIHSETHDLCDETSCPV   99 (153)
T ss_pred             cccCCCcchhhhhcccceEEEEEEecCCCCCCCCCccEEEEecccccEeeCCeEEEEEEEeeEEEeeccccccccccCCc
Confidence            34568999999998777999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             CCCeeEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEeecccccCC
Q 031744           99 STGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFASSVADS  153 (153)
Q Consensus        99 ~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~~~~~~~~  153 (153)
                      ++|.|....++.+|.+.|+|+|.++++++|.+|++ ++|++|.++|..-..++++
T Consensus       100 epG~f~~~hsq~LPg~tPPG~Y~lkm~~~d~~~~~-LTCisfsf~i~~g~~v~~~  153 (153)
T KOG4680|consen  100 EPGDFLVAHSQVLPGYTPPGSYVLKMTAYDAKGKE-LTCISFSFDIGFGSSVADQ  153 (153)
T ss_pred             CcCceeeeeeEeccCcCCCceEEEEEEeecCCCCE-EEEEEEEEEeeccceeccC
Confidence            99999999999999999999999999999999999 9999999999988877764

>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure

Probab=99.97  E-value=1.2e-30  Score=185.45  Aligned_cols=116  Identities=41%  Similarity=0.731  Sum_probs=108.8

Q ss_pred             ceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCc-EEEEEEEEceEEEcccCcCCCCCC-----CCCCC
Q 031744           26 VKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGG-KLVIDVSYFGWHIHSETHDLCDET-----SCPVS   99 (153)
Q Consensus        26 ~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~~~~~~~d~C~~~-----~CPl~   99 (153)
                      |++|+++.++.++|++|+++|||++||++++|++.|++++++++| ++++.+++|+++++....|+|+..     +||++
T Consensus         1 ~~~C~~~~~~~~~i~~V~isP~p~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~~~~~DlC~~~~~~g~~CPi~   80 (122)
T cd00917           1 FEYCDKGGEDIVKVTSVEISPNPPAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLLSETYDLCDETKNVDLSCPIE   80 (122)
T ss_pred             CccCCCCCCCeEEEEEEEEECCCcCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEeecccCCcccccccCCCcCCcC
Confidence            889988766789999999999999999999999999999999998 899999999999998889999964     89999


Q ss_pred             CCeeEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEE
Q 031744          100 TGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDF  142 (153)
Q Consensus       100 ~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v  142 (153)
                      +|++.|..+++||+++|+|+|+++|+++|+++++ ++|++|++
T Consensus        81 ~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~-i~Ci~~~~  122 (122)
T cd00917          81 PGDKFLTKLVDLPGEIPPGKYTVSARAYTKDDEE-ITCLSFSV  122 (122)
T ss_pred             CCcEEEEEEeeCCCCCCCceEEEEEEEECCCCCE-EEEEEeeC
Confidence            9998788899999999999999999999999988 99999975

These proteins belong to the ML domain family.

>smart00737 ML Domain involved in innate immunity and lipid metabolism

Probab=99.96  E-value=1.1e-27  Score=168.85  Aligned_cols=113  Identities=38%  Similarity=0.652  Sum_probs=104.4

Q ss_pred             ceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEce--EEEcccCcCCCCCC--CCCCCCC
Q 031744           26 VKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFG--WHIHSETHDLCDET--SCPVSTG  101 (153)
Q Consensus        26 ~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~--~~~~~~~~d~C~~~--~CPl~~G  101 (153)
                      |++|+++   ..++.+++++||+++||+++++++.|.++++++++++++.+.++|  +|++....|+|+..  .||+++|
T Consensus         1 ~~~C~~~---~~~i~~v~v~Pc~~~~g~~~~i~i~f~~~~~~~~~~~~v~~~~~g~~ip~~~~~~d~C~~~~~~CPl~~G   77 (118)
T smart00737        1 FKDCGSN---PGQISSVSISPCPPVRGKTLTISISFTLNEDISKLKVVVHVKIGGIEVPIPGETYDLCKLLGSKCPIEKG   77 (118)
T ss_pred             CccCCCC---CceEEEEEecCCCCCCCCEEEEEEEEEEcccceEEEEEEEEEECCEEEeccCCCCCccccCCCCCCCCCC
Confidence            7899874   569999999999999999999999999999999999999999997  57888889999875  8999999


Q ss_pred             e-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEE
Q 031744          102 D-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDF  142 (153)
Q Consensus       102 ~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v  142 (153)
                      + |.|+.+++||+.+|.|+|+++|+++|+++++ ++|+++++
T Consensus        78 ~~~~~~~~~~v~~~~P~~~~~v~~~l~d~~~~~-i~C~~~~~  118 (118)
T smart00737       78 ETVNYTNSLTVPGIFPPGKYTVKWELTDEDGEE-LACINFTV  118 (118)
T ss_pred             eeEEEEEeeEccccCCCeEEEEEEEEEcCCCCE-EEEEEccC
Confidence            7 6899999999999999999999999999888 99999874

ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.

>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products

Probab=99.95  E-value=4.9e-27  Score=168.07  Aligned_cols=121  Identities=32%  Similarity=0.603  Sum_probs=105.5

Q ss_pred             cccceecCcCCCccEEEEEEEEe-cCCCCCCceEEEEEEE-EeceeecCcEEEEEEEEce-EEEccc----CcCCCCC--
Q 031744           23 ATDVKYCDKNADYDVKVHGVDIS-PYPVARGREATFSISA-TTDKAISGGKLVIDVSYFG-WHIHSE----THDLCDE--   93 (153)
Q Consensus        23 ~~~~~~C~~~~~~~~~i~~v~i~-Pc~~~~G~~~~i~~~~-~~~~~i~~~~~~v~~~~~~-~~~~~~----~~d~C~~--   93 (153)
                      ++.|++|+++.+..++|++++++ ||+++||++++|++.| ...++.+...+++.+.++| +++|..    ..|+|+.  
T Consensus         1 ~v~~~~C~~~~~~~~~v~~v~i~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~g~~~~~d~C~~~~   80 (134)
T PF02221_consen    1 AVNFKDCGDGKDSPGTVTSVDISPPCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFPGLCEYYDLCDNLF   80 (134)
T ss_dssp             EEEEEESSSCTSSCECEEEEEEESSEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEESSSCEEEEEGTSC
T ss_pred             CcEEEECCCcccCCceeEEEEECCCCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccccccCccchhhhcc
Confidence            37899998755557899999998 9999999999999999 7777666668899999997 655443    3399994  


Q ss_pred             ---CCCCCCCCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEE
Q 031744           94 ---TSCPVSTGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSI  144 (153)
Q Consensus        94 ---~~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i  144 (153)
                         .+||+++|+ |+|++++.||+.+|.|+|+++|+++|++|++ ++|++|+++|
T Consensus        81 ~~~~~CPi~~G~~~~~~~~~~i~~~~p~~~~~i~~~l~d~~~~~-i~C~~~~v~I  134 (134)
T PF02221_consen   81 GNGLSCPIKAGEYYTYTYTIPIPKIYPPGKYTIQWKLTDQDGEE-IACFEFPVKI  134 (134)
T ss_dssp             CSSTTSTBTTTEEEEEEEEEEESTTSSSEEEEEEEEEEETTTEE-EEEEEEEEEE
T ss_pred             cccccCccCCCcEEEEEEEEEcccceeeEEEEEEEEEEeCCCCE-EEEEEEEeEC
Confidence               499999997 5999999999999999999999999999888 9999999987

It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....

>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family

Probab=99.94  E-value=6.6e-27  Score=165.68  Aligned_cols=117  Identities=20%  Similarity=0.313  Sum_probs=103.5

Q ss_pred             ceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceE--EEcccCcCCCCCCCCCCCCCe-
Q 031744           26 VKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGW--HIHSETHDLCDETSCPVSTGD-  102 (153)
Q Consensus        26 ~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~--~~~~~~~d~C~~~~CPl~~G~-  102 (153)
                      |++|+++....++|.+|+-.||.++||+++++++.|+++++.++.++++.+.++|+  |+|..+.|+|+.+.||+.+|+ 
T Consensus         1 f~~Cg~~~~~~V~V~~C~~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~   80 (120)
T cd00918           1 FKDCGKGEIKSLEVDGCSGDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQH   80 (120)
T ss_pred             CeeCCCCCcCEEEeCCCCCCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcE
Confidence            68998765456777888888889999999999999999999888888999999996  555557899998899999996 


Q ss_pred             eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEE
Q 031744          103 FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSI  144 (153)
Q Consensus       103 ~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i  144 (153)
                      |+|+++++|++.||..+++|+|+|.|++| . ++|++++.+|
T Consensus        81 ~~y~~~~~V~~~~P~v~~~V~~~L~d~~g-~-~~Cf~~~~~~  120 (120)
T cd00918          81 YDIKYTWNVPAILPKIKAVVKAVLIGDHG-V-LACGIVNGEV  120 (120)
T ss_pred             EEEEEeeeccccCCCeEEEEEEEEEcCCC-c-EEEEEEcCcC
Confidence            89999999999999999999999999888 6 8999998764

They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.

>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes

Probab=99.94  E-value=2.1e-26  Score=163.92  Aligned_cols=116  Identities=22%  Similarity=0.363  Sum_probs=102.2

Q ss_pred             ceecCcCC--CccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEc--ccCcCCCCC--CCCCCC
Q 031744           26 VKYCDKNA--DYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIH--SETHDLCDE--TSCPVS   99 (153)
Q Consensus        26 ~~~C~~~~--~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~--~~~~d~C~~--~~CPl~   99 (153)
                      |++|+++.  ...+.|++|+-.||.++||+++++++.|++++++++.++++.+.++|+++|  ....|+|++  .+||++
T Consensus         1 ~~~Cg~~~~~~~~V~i~~C~~~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~   80 (123)
T cd00916           1 FRDCGSSRPTPSEVRISGCATLPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLS   80 (123)
T ss_pred             CccCCCCCCceeEEEECCCCCCCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCc
Confidence            78998763  235777888888899999999999999999999988888999999997544  447899987  799999


Q ss_pred             CCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEE
Q 031744          100 TGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDF  142 (153)
Q Consensus       100 ~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v  142 (153)
                      +|+ |+|+++++|++.||.++|+++|+|+|++++. ++||++++
T Consensus        81 ~G~~~~y~~~~~v~~~~P~i~~~v~~~L~d~~~~~-~~Cf~~~~  123 (123)
T cd00916          81 AGEDVTYTLSLPVLAPYPGISVTVEWELTDDDGQV-LTCFQIPA  123 (123)
T ss_pred             CCcEEEEEEeeeccccCCCeEEEEEEEEEcCCCCE-EEEEEeeC
Confidence            996 8999999999999999999999999998888 99999975

Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.

>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi

Probab=99.93  E-value=1.7e-24  Score=154.61  Aligned_cols=112  Identities=21%  Similarity=0.398  Sum_probs=99.0

Q ss_pred             ceecCcCCCccEEEEEEEEecC-----CCCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEccc--CcCCCCCC----
Q 031744           26 VKYCDKNADYDVKVHGVDISPY-----PVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSE--THDLCDET----   94 (153)
Q Consensus        26 ~~~C~~~~~~~~~i~~v~i~Pc-----~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~--~~d~C~~~----   94 (153)
                      |++|+++.   ..+.+|+++||     +++||++++++++|+++++++++++++.++++|+++|..  ..|+|+..    
T Consensus         1 ~~~C~~~~---~~i~~V~v~pc~~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~v~~~~~gi~~p~~~~~~d~C~~~~~~~   77 (127)
T cd00912           1 LVDCSDNS---ANIKEVLLSPCDPLPCPDHRGGNYNLSVTGTLREDIKSLYVDLALMSQGIKVLNPDNSYDFCEAGLPKP   77 (127)
T ss_pred             CcccCCCC---CceeEEEeCCCCCCCCcccCCCeEEEEEEEEECccccEEEEEEEEEECCEEeccCCCCCCcccccCccc
Confidence            78998763   35667777776     999999999999999999999999999999999866654  68999864    


Q ss_pred             -CCCCCCC-eeEEEEEEEeCC-CCCCeEEEEEEEEEeCCCceEEEEEEEE
Q 031744           95 -SCPVSTG-DFVVAHSQVLPG-FTPPGTYSLKMKMYDATKKQVLTCITFD  141 (153)
Q Consensus        95 -~CPl~~G-~~~~~~~~~ip~-~~P~g~y~v~~~l~d~~~~~~i~C~~~~  141 (153)
                       .||+++| +|+|+.+++||+ .+|++.|+++|++.|++|++ ++|++++
T Consensus        78 ~~CPl~~G~~~~~~~~~~v~~~~~P~~~~~v~~~l~~~~~~~-v~C~~~~  126 (127)
T cd00912          78 SFCPLRKGQQYSYAKTVNVPEFTIPTIEYQVVLEDVTDKGEV-LACAQAT  126 (127)
T ss_pred             ccCCcCCCCEEEEEEEEecCcccCCCeeEEEEEEEEcCCCCE-EEEEecc
Confidence             8999999 699999999997 89999999999999998888 9999986

These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.

>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]

Probab=99.93  E-value=1.6e-24  Score=155.97  Aligned_cols=126  Identities=21%  Similarity=0.360  Sum_probs=109.6

Q ss_pred             hcccccceecCcCCC--ccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEce-E--EEcccCcCCCCC-
Q 031744           20 LARATDVKYCDKNAD--YDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFG-W--HIHSETHDLCDE-   93 (153)
Q Consensus        20 ~~~~~~~~~C~~~~~--~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~-~--~~~~~~~d~C~~-   93 (153)
                      .+.++.|++|++..+  ..++|.+|.-+||.++||++.+|++.|..+++.+..+..+....+| +  |+|....|+|.. 
T Consensus        21 q~~~t~~k~C~ss~g~~~~V~i~~C~t~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~  100 (158)
T KOG4063|consen   21 QAISTGVKQCGSSDGTPLEVKIDGCPTTPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCG  100 (158)
T ss_pred             cccCcccccccCCCCcceEEEecCCCCCceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccc
Confidence            455899999998543  3688889999999999999999999999999988887666666655 4  677777888875 


Q ss_pred             -----CCCCCCCCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEee
Q 031744           94 -----TSCPVSTGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGF  146 (153)
Q Consensus        94 -----~~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~  146 (153)
                           ..||+.+|+ |+|..+++|-..||.+...++|+|.|++|+. ..||.++++|++
T Consensus       101 ~l~~gv~CPl~age~ytY~~slpI~~~yP~v~v~iew~L~D~d~~~-~~Cf~ipakIk~  158 (158)
T KOG4063|consen  101 NLLHGVYCPLSAGEDYTYLNSLPITENYPEVSVIIEWQLQDQDNEK-AVCFEIPAKIKK  158 (158)
T ss_pred             cccccccCcccCCCceEEEEEeeccccCCceeEEEEEEEecCCCCe-EEEEEEEeeecC
Confidence                 389999997 9999999999999999999999999999998 999999999974

>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors

Probab=99.86  E-value=8.1e-21  Score=135.53  Aligned_cols=113  Identities=14%  Similarity=0.271  Sum_probs=98.3

Q ss_pred             cccceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEcccCcCCCCC-----CCCC
Q 031744           23 ATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDE-----TSCP   97 (153)
Q Consensus        23 ~~~~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~-----~~CP   97 (153)
                      .+.|+.|+.     ++..++++.||.++||++++|++.|++++++++.++++.+..+|+++|.....+|+.     +.||
T Consensus        10 ~~~y~~cd~-----~~~~~~~~~pC~l~rg~n~~I~~~f~~~~d~~~L~~~v~~~~~g~~lP~~~e~~C~~g~~~~s~CP   84 (130)
T cd00915          10 EFSYSSCDP-----MQDFSFSAEPCSTLKGTNGFIRIKFILRRDIKELYFNLSLNVNGIEVLTRSEIICHGYLDKYSFCG   84 (130)
T ss_pred             EEEeeeCCc-----hheeEeecccccceeCCcEEEEEEEEECcccceeEEEEEEEECCccCCCCCcccccCCCcccccCC
Confidence            367899965     345799999999999999999999999999999999999989998777322349996     5899


Q ss_pred             CCCCe-eEEE--EEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEE
Q 031744           98 VSTGD-FVVA--HSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDF  142 (153)
Q Consensus        98 l~~G~-~~~~--~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v  142 (153)
                      +++|+ |+|+  +++++.+ ||.++|+++|+|.|++++. ++|+++.+
T Consensus        85 ~~kGet~~Y~~p~slpi~~-yP~~~y~V~weL~d~~~~~-l~Cf~~ti  130 (130)
T cd00915          85 ALKGETVYYVGPFSFKGIL-IPQGQYRCVAELIVENRET-VACANFTI  130 (130)
T ss_pred             ccCCceEEEeeeecccccc-cCCccEEEEEEEECCCCCE-EEEEEEEC
Confidence            99996 8999  8899989 9999999999999998888 99999853

MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.

>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides

Probab=99.84  E-value=1.3e-19  Score=132.83  Aligned_cols=121  Identities=26%  Similarity=0.481  Sum_probs=99.7

Q ss_pred             cccceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCc-EEEEEEEEc--e-E-EEc------ccC-cCC
Q 031744           23 ATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGG-KLVIDVSYF--G-W-HIH------SET-HDL   90 (153)
Q Consensus        23 ~~~~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~--~-~-~~~------~~~-~d~   90 (153)
                      ...|++|+++. +.+.|++++++|+|+.+++++++++++++++++.++ ++.+.+...  | | .+|      ..+ .|.
T Consensus         2 ~fsW~nCg~~~-dp~~i~sl~l~PdPi~ipg~~tvs~~~~~~~~lsSp~~~~l~v~k~v~g~Wi~iPC~~~~GSCty~d~   80 (162)
T cd00258           2 GFSWSNCDGES-LPAVIKSLTVNPDPINIPGDLTVSTVGSTSVPLSSPLKVILTLEKEVAGLWMKIPCLDNIGSCTYDNA   80 (162)
T ss_pred             CcccccCCCCC-CceEEeeeEEcCCCcccCCcEEEEEEEEEeeEcCCCcEEEEEEEeecccEEEEcccccccCcccccch
Confidence            36799999854 489999999999999999999999999999999998 787777653  2 2 322      233 388


Q ss_pred             CCCC---------------------CCCCCCCeeEEEEE-EEe-----CCCCCCeEEEEEEEEEeCCCceEEEEEEEEEE
Q 031744           91 CDET---------------------SCPVSTGDFVVAHS-QVL-----PGFTPPGTYSLKMKMYDATKKQVLTCITFDFS  143 (153)
Q Consensus        91 C~~~---------------------~CPl~~G~~~~~~~-~~i-----p~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~  143 (153)
                      |+.+                     +||+++|+|+++.+ ++|     |.++++|+|++++.+ +++|++ ++|+++.++
T Consensus        81 C~~l~~~~~~~~~Cp~~l~~~g~pC~CP~~~G~y~lp~s~f~lP~~~LPs~l~~G~Y~i~~~l-~~~g~~-l~C~~~~~s  158 (162)
T cd00258          81 CDLLDTLIPPGQQCPEPLRTYGLPCHCPFKEGVYSLPDSTFTLPNVDLPSWLTNGNYRITGIL-MADGKE-LGCGKFTFS  158 (162)
T ss_pred             hhchhcccCCCCCCCchhhccCCccCCCCCCcceEccceeeecccccCCCccCCCcEEEEEEE-CCCCCE-EEEEEEEEE
Confidence            8853                     69999999987443 356     888999999999998 788899 999999999


Q ss_pred             Eee
Q 031744          144 IGF  146 (153)
Q Consensus       144 i~~  146 (153)
                      +..
T Consensus       159 L~~  161 (162)
T cd00258         159 LES  161 (162)
T ss_pred             Eec
Confidence            874

GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.

>PF14558 TRP_N: ML-like domain

Probab=99.08  E-value=3.6e-09  Score=76.88  Aligned_cols=117  Identities=24%  Similarity=0.438  Sum_probs=82.2

Q ss_pred             cccceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEcccCcCCCCC---CCCCCC
Q 031744           23 ATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDE---TSCPVS   99 (153)
Q Consensus        23 ~~~~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~---~~CPl~   99 (153)
                      ...|.+|.+++....+..+++..|.    .+++.+++.|+.+.+-..-++++++...|........|+|+.   ..||+.
T Consensus         4 t~~f~~Cl~~s~~~~~~Fdv~~~~~----n~tl~~~v~G~s~~~~~~vtl~~~v~ayg~~~~~~~~d~C~~~~~~lCPl~   79 (141)
T PF14558_consen    4 TSSFSNCLDNSYFTASRFDVTYDPD----NRTLVFDVYGNSSISNKYVTLFISVNAYGYTPYNETFDPCDSNVPGLCPLP   79 (141)
T ss_pred             eCChhHcCCccccceEEEeEEEcCC----CCEEEEEEEEEeccCCcEEEEEEEEEeeccccccccCCcccCCCCcccccc
Confidence            4689999988655556666666674    568999999987753221245667766777666888999995   379999


Q ss_pred             CCeeEEEEEEEe-C----CCCC-------CeEEEEEEEEEeC-CCceEEEEEEEEEEE
Q 031744          100 TGDFVVAHSQVL-P----GFTP-------PGTYSLKMKMYDA-TKKQVLTCITFDFSI  144 (153)
Q Consensus       100 ~G~~~~~~~~~i-p----~~~P-------~g~y~v~~~l~d~-~~~~~i~C~~~~v~i  144 (153)
                      +|.+....+..+ |    ..+|       ...-++++++.+. ++++ ++|++..++=
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~ip~iay~~pdl~a~~~v~~~~~~~~~~-iaCv~a~ltn  136 (141)
T PF14558_consen   80 PGFFAIASSQIIVPPSFTSQIPSIAYAFPDLDATVRVILGDTDTGTQ-IACVQATLTN  136 (141)
T ss_pred             ccccccccccccCCHHHhhcCCceeEEcCCceEEEEEEEccCCCCCE-EEEEEEEEEC
Confidence            998655444444 3    2344       4444568888888 5667 9999998863

>PF15418 DUF4625: Domain of unknown function (DUF4625)

Probab=97.28  E-value=0.012  Score=42.28  Aligned_cols=93  Identities=22%  Similarity=0.346  Sum_probs=58.4

Q ss_pred             CCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEcccCcCCCCCC-----CCCCCCC--eeEEEEEEEeCCCCCCeEEE
Q 031744           49 VARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDET-----SCPVSTG--DFVVAHSQVLPGFTPPGTYS  121 (153)
Q Consensus        49 ~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~~-----~CPl~~G--~~~~~~~~~ip~~~P~g~y~  121 (153)
                      .+||+++.+++....+..+.+-.+.+.-.+.+-. -.....-|..-     .=.+..|  .|.++..+.||..+|+|.|.
T Consensus        32 ~~~G~~ihfe~~i~d~~~i~si~VeIH~nfd~H~-h~~~~~~~~~~~~~~~~~~~~~g~~~~~~h~~i~IPa~a~~G~YH  110 (132)
T PF15418_consen   32 ATRGDDIHFEADISDNSAIKSIKVEIHNNFDHHT-HSTEAGECEKPWVFEQDYDIYGGKKNYDFHEHIDIPADAPAGDYH  110 (132)
T ss_pred             EecCCcEEEEEEEEcccceeEEEEEEecCcCccc-ccccccccccCcEEEEEEcccCCcccEeEEEeeeCCCCCCCcceE
Confidence            8899999999988887766443333321111110 00001112210     0023344  58999999999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEEEEEE
Q 031744          122 LKMKMYDATKKQVLTCITFDFSI  144 (153)
Q Consensus       122 v~~~l~d~~~~~~i~C~~~~v~i  144 (153)
                      +.++++|+.|.+  .=....++|
T Consensus       111 ~~i~VtD~~Gn~--~~~~~~i~I  131 (132)
T PF15418_consen  111 FMITVTDAAGNQ--TEEERSIKI  131 (132)
T ss_pred             EEEEEEECCCCE--EEEEEEEEE
Confidence            999999999987  335555544

>smart00697 DM8 Repeats found in several Drosophila proteins

Probab=96.68  E-value=0.0036  Score=41.41  Aligned_cols=36  Identities=28%  Similarity=0.791  Sum_probs=28.5

Q ss_pred             CCCCCCCeeEE---EEE-EEeCCCCCCeEEEEEEEEEeCC
Q 031744           95 SCPVSTGDFVV---AHS-QVLPGFTPPGTYSLKMKMYDAT  130 (153)
Q Consensus        95 ~CPl~~G~~~~---~~~-~~ip~~~P~g~y~v~~~l~d~~  130 (153)
                      .||+.+|.|.+   ..+ ..+|..+|.|.|.+++++...+
T Consensus        41 ~CP~~~g~y~~~n~~l~~~~~p~~lP~G~y~~~~~~~~~~   80 (93)
T smart00697       41 TCPLPKGHYYLRNFRLDENLLPSFLPDGDYRLNLTFFFGK   80 (93)
T ss_pred             CCCCcCCeEEEEeeEeCcccCCccCCCeeEEEEEEEEcCc
Confidence            79999998733   332 3578899999999999988643

>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B

Probab=95.66  E-value=0.21  Score=34.92  Aligned_cols=89  Identities=16%  Similarity=0.266  Sum_probs=53.5

Q ss_pred             cEEEEEEEEec-----C-CCCCCceEEEEEEEEeceeecCcEEEEEEEE-ceEEEcccCcCCCCCCCCCC-CCCeeEEEE
Q 031744           36 DVKVHGVDISP-----Y-PVARGREATFSISATTDKAISGGKLVIDVSY-FGWHIHSETHDLCDETSCPV-STGDFVVAH  107 (153)
Q Consensus        36 ~~~i~~v~i~P-----c-~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~-~~~~~~~~~~d~C~~~~CPl-~~G~~~~~~  107 (153)
                      .++|+++.+..     + .+..|+++.+++...+.+++....+.+.+.- .|..+...+. ......-+. ..|.+++++
T Consensus        12 ~~~I~~v~i~~~~g~~~~~~~~ge~~~i~i~~~~~~~i~~~~~~~~i~~~~g~~v~~~~t-~~~~~~~~~~~~g~~~~~~   90 (142)
T PF14524_consen   12 EARITSVRILDSDGEPTSSFESGEPIRIRIDYEVNEDIDDPVFGFAIRDSDGQRVFGTNT-YDSGFPIPLSEGGTYEVTF   90 (142)
T ss_dssp             SEEEEEEEEEETTEES-SSEETTSEEEEEEEEEESS-EEEEEEEEEEEETT--EEEEEEH-HHHT--EEE-TT-EEEEEE
T ss_pred             CEEEEEEEEEeCCCCEeeEEeCCCEEEEEEEEEECCCCCccEEEEEEEcCCCCEEEEECc-cccCccccccCCCEEEEEE
Confidence            58888888854     2 3778999999999999988876544444432 2444444222 111111122 267787777


Q ss_pred             EEEeCCCCCCeEEEEEEEEE
Q 031744          108 SQVLPGFTPPGTYSLKMKMY  127 (153)
Q Consensus       108 ~~~ip~~~P~g~y~v~~~l~  127 (153)
                      +++.+  +.+|.|.+.+.+.
T Consensus        91 ~i~~~--L~~G~Y~i~v~l~  108 (142)
T PF14524_consen   91 TIPKP--LNPGEYSISVGLG  108 (142)
T ss_dssp             EEE----B-SEEEEEEEEEE
T ss_pred             EEcCc--cCCCeEEEEEEEE
Confidence            77666  7789999999994

>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them

Probab=95.20  E-value=0.27  Score=37.81  Aligned_cols=95  Identities=21%  Similarity=0.315  Sum_probs=58.3

Q ss_pred             CCCCceEEEEEEEEeceeecCc-EEEEEEEEceEEEcccCcCCCCCCCCCCCCCeeEEEEEE-EeC-CCCCCeEEEEEEE
Q 031744           49 VARGREATFSISATTDKAISGG-KLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQ-VLP-GFTPPGTYSLKMK  125 (153)
Q Consensus        49 ~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~~~~~~~~-~ip-~~~P~g~y~v~~~  125 (153)
                      ++-|....+.+.|.+.+++-+| +..-.++.+|+++-....-+ + ...|= ...|++++.- ..| .++-.|+|+++-+
T Consensus       103 IKEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~Vdk~~~mi-G-sy~P~-~e~y~~~~p~eeaPsG~laRG~Y~aks~  179 (200)
T PF02115_consen  103 IKEGSKYRLKITFKVQHEIVSGLKYVQTVKRKGIPVDKREEMI-G-SYAPQ-TEPYEKTFPEEEAPSGMLARGSYTAKSK  179 (200)
T ss_dssp             EETT-EEEEEEEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-E-EE--E-SSEEEEEEEEEE--BSTTT-EEEEEEEE
T ss_pred             ccCCCEEEEEEEEEECCccccCcEEEEEEEECCEeEcccceee-e-ccCCC-CcceEEeCcCccCCCceeEeeeeeEEEE
Confidence            6679999999999999986565 66666777888764433211 1 11232 2235554432 234 4556689999999


Q ss_pred             EEeCCCceEEEEEEEEEEEeec
Q 031744          126 MYDATKKQVLTCITFDFSIGFA  147 (153)
Q Consensus       126 l~d~~~~~~i~C~~~~v~i~~~  147 (153)
                      ++|+++.. ..=++-.+.|+++
T Consensus       180 f~DdD~~~-~l~~~w~feI~Kd  200 (200)
T PF02115_consen  180 FVDDDKNV-HLEWEWSFEIKKD  200 (200)
T ss_dssp             EEETTSSE-CEEEEEEEEEESS
T ss_pred             EEeCCCcE-EEEEEEEEEEecC
Confidence            99988875 5667777777763

The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....

>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329

Probab=95.14  E-value=0.72  Score=34.38  Aligned_cols=106  Identities=13%  Similarity=0.194  Sum_probs=59.7

Q ss_pred             cccceecCcCCC------ccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCc-EEE--EEEEE---ceE-E--EcccC
Q 031744           23 ATDVKYCDKNAD------YDVKVHGVDISPYPVARGREATFSISATTDKAISGG-KLV--IDVSY---FGW-H--IHSET   87 (153)
Q Consensus        23 ~~~~~~C~~~~~------~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~--v~~~~---~~~-~--~~~~~   87 (153)
                      .-.|++|.++++      ..+.+.+++++..    ++.+.++-..+..-+++-+ .+.  +.+..   |-| |  +-...
T Consensus        10 ~~ifs~C~n~~pg~~~i~~~~D~S~l~~~~d----~~~i~vsGn~t~~wdi~P~DrI~~~~~~~~~eRG~W~PTv~s~~~   85 (164)
T smart00675       10 PDLYSPCTDAPPGNIGLREAFDISNLVVDMD----PDGLHISGNITVIWDVQPTDRISARVSVMHFERGTWQPTVFNMAT   85 (164)
T ss_pred             ccccccCCCCCCCccchhhccchhheEEEEc----CCeEEEeeeEEEEEecCCCCeEEEEEEEEEecCCeeeeeEEeeec
Confidence            457899987642      2356667776652    3444444444445566333 443  43333   334 3  33346


Q ss_pred             cCCCCCC-----------------------CCCCCCCe-e---EEEEEEEeCC---CCCCeEEEE--EEEEEeCCCc
Q 031744           88 HDLCDET-----------------------SCPVSTGD-F---VVAHSQVLPG---FTPPGTYSL--KMKMYDATKK  132 (153)
Q Consensus        88 ~d~C~~~-----------------------~CPl~~G~-~---~~~~~~~ip~---~~P~g~y~v--~~~l~d~~~~  132 (153)
                      .|.|+.+                       .||..+|+ +   .|...+.+..   ..-.|+|.+  +++..|+.|.
T Consensus        86 ~dFC~~m~d~~q~WY~~wtk~i~N~~evk~kC~~~~Gtv~~~e~~~~~l~~~n~~~p~~~Gr~K~v~~~~AfD~~~~  162 (164)
T smart00675       86 PDFCKSMFDKNQYWYKYWTKYISNKEEIKEKCLTTKGTVLVYEPFLLKLKLSNVNGPNLRGRYKAVVTFEAFDEKNV  162 (164)
T ss_pred             cChhHHhcCCCcchHHHHHHhcccHHHHHhcCCCCCCeEEEecceeEEEEEeccCCCCcCCcEEEEEEEEeecccCc
Confidence            7999852                       69999996 4   4555555532   223576665  5556666553

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=94.42  E-value=0.32  Score=31.16  Aligned_cols=72  Identities=18%  Similarity=0.440  Sum_probs=38.6

Q ss_pred             CCCceEEEEEEEEecee--ecCcEEEEEEEEceEEEcccCcCCCCCCCCCCCCCe-eEEEEEEEeCCCCCCeEEEEEEEE
Q 031744           50 ARGREATFSISATTDKA--ISGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGD-FVVAHSQVLPGFTPPGTYSLKMKM  126 (153)
Q Consensus        50 ~~G~~~~i~~~~~~~~~--i~~~~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l  126 (153)
                      .+|+.++++++......  +.+..+.+.+ =.||...... .   ... .+.+|+ -++++.+.+|...++|.|.+.+++
T Consensus         2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-P~GW~~~~~~-~---~~~-~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~a   75 (78)
T PF10633_consen    2 TPGETVTVTLTVTNTGTAPLTNVSLSLSL-PEGWTVSASP-A---SVP-SLPPGESVTVTFTVTVPADAAPGTYTVTVTA   75 (78)
T ss_dssp             -TTEEEEEEEEEE--SSS-BSS-EEEEE---TTSE---EE-E---EE---B-TTSEEEEEEEEEE-TT--SEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCceeeEEEEEeC-CCCccccCCc-c---ccc-cCCCCCEEEEEEEEECCCCCCCceEEEEEEE
Confidence            46888888887765542  2222333332 1345411110 0   112 579997 599999999999999999999987


Q ss_pred             E
Q 031744          127 Y  127 (153)
Q Consensus       127 ~  127 (153)
                      .
T Consensus        76 ~   76 (78)
T PF10633_consen   76 R   76 (78)
T ss_dssp             E
T ss_pred             E
Confidence            5

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins

Probab=94.32  E-value=0.87  Score=29.74  Aligned_cols=82  Identities=17%  Similarity=0.402  Sum_probs=51.0

Q ss_pred             cEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEcccCcCCCCCCCCCCCCCe-eEEEEEEEeCCC
Q 031744           36 DVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGD-FVVAHSQVLPGF  114 (153)
Q Consensus        36 ~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~-~~~~~~~~ip~~  114 (153)
                      ++.| .+...|..+..|++++++++..-........+.+.+..++-..-.  ... ..    |.+|+ .++++++..+  
T Consensus         3 DL~v-~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~--~~i-~~----L~~g~~~~v~~~~~~~--   72 (101)
T PF07705_consen    3 DLTV-SITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSVST--VTI-PS----LAPGESETVTFTWTPP--   72 (101)
T ss_dssp             -EEE--EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEE--EEE-SE----B-TTEEEEEEEEEE-S--
T ss_pred             CEEE-EEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCceecc--EEE-CC----cCCCcEEEEEEEEEeC--
Confidence            4667 788889999999999999987666554445567777666643311  111 22    68886 5777777766  


Q ss_pred             CCCeEEEEEEEEEe
Q 031744          115 TPPGTYSLKMKMYD  128 (153)
Q Consensus       115 ~P~g~y~v~~~l~d  128 (153)
                       -+|.|++++.+-.
T Consensus        73 -~~G~~~i~~~iD~   85 (101)
T PF07705_consen   73 -SPGSYTIRVVIDP   85 (101)
T ss_dssp             -S-CEEEEEEEEST
T ss_pred             -CCCeEEEEEEEee
Confidence             4789998887743

; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.

>PF06477 DUF1091: Protein of unknown function (DUF1091); InterPro: IPR010512 This entry contains a number of proteins from Drosophila melanogaster and other insects

Probab=94.28  E-value=0.052  Score=35.07  Aligned_cols=28  Identities=32%  Similarity=0.925  Sum_probs=21.7

Q ss_pred             CCCCCCCeeEE---EEE-EEeCCCCCCeEEEE
Q 031744           95 SCPVSTGDFVV---AHS-QVLPGFTPPGTYSL  122 (153)
Q Consensus        95 ~CPl~~G~~~~---~~~-~~ip~~~P~g~y~v  122 (153)
                      .||+++|.|.+   ..+ -.+|...|.|.|.+
T Consensus        50 ~CP~~~g~Y~~~n~~~~~~~~P~~~p~G~y~i   81 (81)
T PF06477_consen   50 TCPFKKGNYYLRNFTIDEKFLPSFLPEGDYRI   81 (81)
T ss_pred             CCCCCCCEEEEEEEEECcccCCCcCCCeEEEC
Confidence            69999998744   343 45899999999874

Their function is unknown.

>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule

Probab=93.51  E-value=0.51  Score=31.72  Aligned_cols=28  Identities=29%  Similarity=0.497  Sum_probs=22.1

Q ss_pred             EEEEEeCCCCCCeEEEEEEEEEeCCCce
Q 031744          106 AHSQVLPGFTPPGTYSLKMKMYDATKKQ  133 (153)
Q Consensus       106 ~~~~~ip~~~P~g~y~v~~~l~d~~~~~  133 (153)
                      .+.+.+|...++|.|+|+|+....||..
T Consensus        60 ~~~~~l~~~l~~G~YtV~wrvvs~DGH~   87 (97)
T PF04234_consen   60 TLTVPLPPPLPPGTYTVSWRVVSADGHP   87 (97)
T ss_dssp             EEEEEESS---SEEEEEEEEEEETTSCE
T ss_pred             EEEEECCCCCCCceEEEEEEEEecCCCC
Confidence            5677888889999999999999999886

Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.

>PRK10301 hypothetical protein; Provisional

Probab=92.40  E-value=0.37  Score=34.17  Aligned_cols=28  Identities=18%  Similarity=0.270  Sum_probs=23.5

Q ss_pred             EEEEEeCCCCCCeEEEEEEEEEeCCCce
Q 031744          106 AHSQVLPGFTPPGTYSLKMKMYDATKKQ  133 (153)
Q Consensus       106 ~~~~~ip~~~P~g~y~v~~~l~d~~~~~  133 (153)
                      .+.++++...++|.|+|+|+....||..
T Consensus        87 ~~~v~l~~~L~~G~YtV~Wrvvs~DGH~  114 (124)
T PRK10301         87 QLIVPLADSLKPGTYTVDWHVVSVDGHK  114 (124)
T ss_pred             EEEEECCCCCCCccEEEEEEEEecCCCc
Confidence            3466777778999999999999999875

>PLN02991 oxidoreductase

Probab=91.62  E-value=0.91  Score=39.98  Aligned_cols=68  Identities=19%  Similarity=0.274  Sum_probs=37.6

Q ss_pred             ccEEEEEEEEecCC------------------CCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEccc-CcCCCCCCC
Q 031744           35 YDVKVHGVDISPYP------------------VARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSE-THDLCDETS   95 (153)
Q Consensus        35 ~~~~i~~v~i~Pc~------------------~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~-~~d~C~~~~   95 (153)
                      +.++|+..+++|.=                  +.+|.++.|++.=.++    .   ...+.+.|+..... ..|.=..+.
T Consensus        31 ~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~----~---~ttiHWHGi~q~~~~~~DGv~~tQ  103 (543)
T PLN02991         31 FEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLD----E---PFLISWSGIRNWRNSYQDGVYGTT  103 (543)
T ss_pred             EEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCC----C---CccEEECCcccCCCccccCCCCCC
Confidence            46788888888752                  3344444444432111    1   12345555543322 235434468


Q ss_pred             CCCCCCe-eEEEEEE
Q 031744           96 CPVSTGD-FVVAHSQ  109 (153)
Q Consensus        96 CPl~~G~-~~~~~~~  109 (153)
                      |||.+|+ |+|++.+
T Consensus       104 cpI~PG~sftY~F~~  118 (543)
T PLN02991        104 CPIPPGKNYTYALQV  118 (543)
T ss_pred             CccCCCCcEEEEEEe
Confidence            9999996 7777764

>PLN02354 copper ion binding / oxidoreductase

Probab=91.40  E-value=0.82  Score=40.31  Aligned_cols=68  Identities=16%  Similarity=0.255  Sum_probs=36.4

Q ss_pred             ccEEEEEEEEecCC------------------CCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEccc-CcCCCCCCC
Q 031744           35 YDVKVHGVDISPYP------------------VARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSE-THDLCDETS   95 (153)
Q Consensus        35 ~~~~i~~v~i~Pc~------------------~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~-~~d~C~~~~   95 (153)
                      +.++|+..+.+|.-                  +.+|.++.|++.=.+.    .+   ..+.+.|+..... ..|.=.++.
T Consensus        30 y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~----~~---ttiHWHGi~q~~~~~~DGv~~TQ  102 (552)
T PLN02354         30 FTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLD----EP---FLLTWSGIQQRKNSWQDGVPGTN  102 (552)
T ss_pred             EEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCC----CC---cccccccccCCCCcccCCCcCCc
Confidence            46788888888752                  2344444444432221    11   2344445533322 234433378


Q ss_pred             CCCCCCe-eEEEEEE
Q 031744           96 CPVSTGD-FVVAHSQ  109 (153)
Q Consensus        96 CPl~~G~-~~~~~~~  109 (153)
                      ||+.+|+ |+|+++.
T Consensus       103 cpI~PG~sf~Y~F~~  117 (552)
T PLN02354        103 CPIPPGTNFTYHFQP  117 (552)
T ss_pred             CCCCCCCcEEEEEEe
Confidence            9999996 7777763

>PLN00044 multi-copper oxidase-related protein; Provisional

Probab=91.29  E-value=1.4  Score=39.30  Aligned_cols=74  Identities=20%  Similarity=0.341  Sum_probs=36.8

Q ss_pred             CccEEEEEEEEecCC-CCCCceEEEEEEEEece---eecCc-EEEEEE----------EEceEEEccc-CcCCCCCCCCC
Q 031744           34 DYDVKVHGVDISPYP-VARGREATFSISATTDK---AISGG-KLVIDV----------SYFGWHIHSE-THDLCDETSCP   97 (153)
Q Consensus        34 ~~~~~i~~v~i~Pc~-~~~G~~~~i~~~~~~~~---~i~~~-~~~v~~----------~~~~~~~~~~-~~d~C~~~~CP   97 (153)
                      .+.++|+..+++|.- ..+-+  .+.+.|....   ++..| ++.+.+          .+.|+..+.. ..|.=..+.||
T Consensus        29 ~y~~~v~~~~~~pdg~~~~~~--vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcP  106 (596)
T PLN00044         29 YYDWEVSYVSAAPLGGVKKQE--AIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCA  106 (596)
T ss_pred             EEEEEEEEEEEccCCCceeeE--EEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCC
Confidence            456889999999852 11111  2222221111   12233 344443          3334322221 23433347899


Q ss_pred             CCCCe-eEEEEEE
Q 031744           98 VSTGD-FVVAHSQ  109 (153)
Q Consensus        98 l~~G~-~~~~~~~  109 (153)
                      +.+|+ |+|++.+
T Consensus       107 I~PG~sftY~F~~  119 (596)
T PLN00044        107 IPAGWNWTYQFQV  119 (596)
T ss_pred             cCCCCcEEEEEEe
Confidence            99996 7777765

>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]

Probab=90.10  E-value=6.9  Score=29.82  Aligned_cols=91  Identities=25%  Similarity=0.318  Sum_probs=55.8

Q ss_pred             CCCCceEEEEEEEEeceeecCc-EEEEEEEEceEEEcccCcCCCCCCCCCCCCCeeEEEEEEEeC-CCCCC-----eEEE
Q 031744           49 VARGREATFSISATTDKAISGG-KLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLP-GFTPP-----GTYS  121 (153)
Q Consensus        49 ~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~~~~~~~~~ip-~~~P~-----g~y~  121 (153)
                      ++-|+...+.+.|.+.++|-+| ...=.++--|+.+-...+=+=.+  =| ++-.|.|    ..| .++|+     |+|.
T Consensus       101 iKEGs~Y~lki~F~Vq~eIvSGLrY~q~v~r~Gv~VDk~~~MlGSy--~P-~~e~ye~----~~p~eeAPsGmlaRG~Ys  173 (200)
T KOG3205|consen  101 IKEGSEYRLKISFRVQREIVSGLRYVQTVYRTGVKVDKTKYMLGSY--GP-QAEPYEF----VTPEEEAPSGMLARGSYS  173 (200)
T ss_pred             eecCcEEEEEEEEEEeeheeccceeeeEEeecceEEeehhhhcccC--CC-CCcceee----eCCcccCCccceeeccee
Confidence            5668888899999999999888 45445555666554333211111  11 1222433    223 33554     6999


Q ss_pred             EEEEEEeCCCceEEEEEEEEEEEeec
Q 031744          122 LKMKMYDATKKQVLTCITFDFSIGFA  147 (153)
Q Consensus       122 v~~~l~d~~~~~~i~C~~~~v~i~~~  147 (153)
                      ++-.++|+++.. -.=.+-.+.|.++
T Consensus       174 ~~skF~DDDk~~-hLe~~w~~~I~K~  198 (200)
T KOG3205|consen  174 AKSKFTDDDKTC-HLEWNWTFDIKKE  198 (200)
T ss_pred             eeeEEecCCCce-EEEEEEEEEEeec
Confidence            999999988764 4455666666653

>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=88.88  E-value=0.65  Score=32.60  Aligned_cols=32  Identities=22%  Similarity=0.370  Sum_probs=18.4

Q ss_pred             CCCCCCCeeEEEEEEEeCCCCCC--------eEEEEEEEE
Q 031744           95 SCPVSTGDFVVAHSQVLPGFTPP--------GTYSLKMKM  126 (153)
Q Consensus        95 ~CPl~~G~~~~~~~~~ip~~~P~--------g~y~v~~~l  126 (153)
                      ..-+.+|+|+|.+++.+|...|+        +.|.+++.+
T Consensus        87 ~~~l~~G~~~fpF~f~LP~~lP~S~~~~~g~I~Y~l~a~l  126 (149)
T PF00339_consen   87 PNILPPGEYEFPFEFQLPSNLPSSFEGSHGSIRYKLKATL  126 (149)
T ss_dssp             -----C-TTEEEEEE---TTS--SEEEE-SEEEEEEEEEE
T ss_pred             eecccCCCEEEEEEEECCCCCCceEeccCcCEEEEEEEEE
Confidence            35578999999999999988876        478888888

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>TIGR02186 alph_Pro_TM conserved hypothetical protein

Probab=88.29  E-value=2.5  Score=33.86  Aligned_cols=42  Identities=14%  Similarity=0.211  Sum_probs=35.5

Q ss_pred             EEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEeec
Q 031744          104 VVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFA  147 (153)
Q Consensus       104 ~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~~  147 (153)
                      -|..++.+|...|.|.|++++.+.- +|+. ++=.+.++++++-
T Consensus       181 LFra~i~LPAnvp~G~Y~v~v~L~r-~G~v-v~~~~t~l~V~Kv  222 (261)
T TIGR02186       181 LFRATLRLPANVPNGTHEVRAYLFR-GGVF-IARTELALEIVKT  222 (261)
T ss_pred             eEEEeeecCCCCCCceEEEEEEEEe-CCEE-EEEEEeEEEEEEe
Confidence            3567899999999999999999995 6677 8888888888763

This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome.

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=88.21  E-value=0.84  Score=27.85  Aligned_cols=30  Identities=27%  Similarity=0.475  Sum_probs=18.6

Q ss_pred             CCCeEEEEEEEEEeCCCceEEEEEEEEEEE
Q 031744          115 TPPGTYSLKMKMYDATKKQVLTCITFDFSI  144 (153)
Q Consensus       115 ~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i  144 (153)
                      .|+|+|+++++..|.++..+.....+.+.|
T Consensus        36 L~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I   65 (66)
T PF07495_consen   36 LPPGKYTLEVRAKDNNGKWSSDEKSLTITI   65 (66)
T ss_dssp             --SEEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred             CCCEEEEEEEEEECCCCCcCcccEEEEEEE
Confidence            689999999999998876422235555544

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PLN02835 oxidoreductase

Probab=87.26  E-value=4.2  Score=35.77  Aligned_cols=34  Identities=15%  Similarity=0.377  Sum_probs=20.1

Q ss_pred             EEEceEEEcccC-cCCCCCCCCCCCCCe-eEEEEEE
Q 031744           76 VSYFGWHIHSET-HDLCDETSCPVSTGD-FVVAHSQ  109 (153)
Q Consensus        76 ~~~~~~~~~~~~-~d~C~~~~CPl~~G~-~~~~~~~  109 (153)
                      +.+.|+..+... .|.=.++.||+.+|+ |+|++..
T Consensus        84 iHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~  119 (539)
T PLN02835         84 LTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQT  119 (539)
T ss_pred             EEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEE
Confidence            445555444322 344333789999996 7776653

>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids

Probab=86.40  E-value=3.9  Score=32.24  Aligned_cols=42  Identities=14%  Similarity=0.362  Sum_probs=33.8

Q ss_pred             EEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEeec
Q 031744          104 VVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFA  147 (153)
Q Consensus       104 ~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~~  147 (153)
                      -|..++.+|...|.|.|++++-+.- +|+. +.=...++++.+-
T Consensus       156 lFra~i~LPanvp~G~Y~v~v~l~r-dG~v-v~~~~~~l~V~Kv  197 (236)
T PF09608_consen  156 LFRARIPLPANVPPGDYTVRVYLFR-DGQV-VASQETPLRVRKV  197 (236)
T ss_pred             eEEEEeEcCCCCCcceEEEEEEEEE-CCEE-EEEEeeEEEEEEc
Confidence            4678899999999999999999986 5566 7777777777653

They are found predominantly, though not exclusively, in alphaproteobacteria, generally only once in each genome.

>PLN02168 copper ion binding / pectinesterase

Probab=84.36  E-value=7.7  Score=34.23  Aligned_cols=68  Identities=13%  Similarity=0.177  Sum_probs=38.2

Q ss_pred             ccEEEEEEEEecCC------------------CCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEcccC-cCCCCCCC
Q 031744           35 YDVKVHGVDISPYP------------------VARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSET-HDLCDETS   95 (153)
Q Consensus        35 ~~~~i~~v~i~Pc~------------------~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~-~d~C~~~~   95 (153)
                      +.++|+..+..|.-                  +++|.++.|++.=.++    .   ...+.+.|+..+... .|.=.++.
T Consensus        29 ~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~----~---~ttiHWHGl~~~~~~~~DGv~gtQ  101 (545)
T PLN02168         29 YQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLT----E---PFLMTWNGLQLRKNSWQDGVRGTN  101 (545)
T ss_pred             EEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCC----C---CccEeeCCccCCCCCCcCCCCCCc
Confidence            45778888887752                  3345555554432222    1   123455555444332 24432378


Q ss_pred             CCCCCCe-eEEEEEE
Q 031744           96 CPVSTGD-FVVAHSQ  109 (153)
Q Consensus        96 CPl~~G~-~~~~~~~  109 (153)
                      ||+.+|+ |+|++.+
T Consensus       102 cpI~PG~sftY~F~~  116 (545)
T PLN02168        102 CPILPGTNWTYRFQV  116 (545)
T ss_pred             CCCCCCCcEEEEEEe
Confidence            9999996 7777764

>COG1470 Predicted membrane protein [Function unknown]

Probab=84.25  E-value=21  Score=31.04  Aligned_cols=32  Identities=16%  Similarity=0.327  Sum_probs=29.3

Q ss_pred             CCCCee-EEEEEEEeCCCCCCeEEEEEEEEEeC
Q 031744           98 VSTGDF-VVAHSQVLPGFTPPGTYSLKMKMYDA  129 (153)
Q Consensus        98 l~~G~~-~~~~~~~ip~~~P~g~y~v~~~l~d~  129 (153)
                      +++|++ +.+.++.+|+.+++|.|.++++...+
T Consensus       438 L~pge~~tV~ltI~vP~~a~aGdY~i~i~~ksD  470 (513)
T COG1470         438 LEPGESKTVSLTITVPEDAGAGDYRITITAKSD  470 (513)
T ss_pred             cCCCCcceEEEEEEcCCCCCCCcEEEEEEEeec
Confidence            689987 99999999999999999999998875

>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=83.71  E-value=16  Score=32.56  Aligned_cols=35  Identities=20%  Similarity=0.428  Sum_probs=21.0

Q ss_pred             EEEEEceEEEccc-CcCCCCC-CCCCCCCCe-eEEEEEE
Q 031744           74 IDVSYFGWHIHSE-THDLCDE-TSCPVSTGD-FVVAHSQ  109 (153)
Q Consensus        74 v~~~~~~~~~~~~-~~d~C~~-~~CPl~~G~-~~~~~~~  109 (153)
                      +.+.+.|+.-... -.|+ .. +.||+++|+ |+|.+++
T Consensus        81 ~sihWhGv~q~kn~w~DG-~~~TqCPI~Pg~~~tY~F~v  118 (563)
T KOG1263|consen   81 FSIHWHGVRQRKNPWQDG-VYITQCPIQPGENFTYRFTV  118 (563)
T ss_pred             eEEEeccccccCCccccC-CccccCCcCCCCeEEEEEEe
Confidence            3455555532222 2377 55 699999996 7666553

>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]

Probab=82.22  E-value=5.3  Score=28.53  Aligned_cols=37  Identities=16%  Similarity=0.254  Sum_probs=28.1

Q ss_pred             EEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEE
Q 031744          106 AHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSI  144 (153)
Q Consensus       106 ~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i  144 (153)
                      .+.++++..+..|.|++.|++...||..  .=-.+.|++
T Consensus        88 ~l~v~l~~~L~aG~Y~v~WrvvS~DGH~--v~G~~sFsV  124 (127)
T COG2372          88 QLEVPLPQPLKAGVYTVDWRVVSSDGHV--VKGSISFSV  124 (127)
T ss_pred             EEEecCcccCCCCcEEEEEEEEecCCcE--eccEEEEEe
Confidence            4677888889999999999999999875  333344443

>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi

Probab=81.37  E-value=4.5  Score=28.22  Aligned_cols=40  Identities=18%  Similarity=0.254  Sum_probs=31.9

Q ss_pred             CcCCCCCCCCCCCCCe-eEEEEEEEeCCCCCCeEEEEEEEE
Q 031744           87 THDLCDETSCPVSTGD-FVVAHSQVLPGFTPPGTYSLKMKM  126 (153)
Q Consensus        87 ~~d~C~~~~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l  126 (153)
                      ....|...+||+..|. .+++.++.....+..++..+.+++
T Consensus        15 ~v~pc~~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~v~~~~   55 (127)
T cd00912          15 LLSPCDPLPCPDHRGGNYNLSVTGTLREDIKSLYVDLALMS   55 (127)
T ss_pred             EeCCCCCCCCcccCCCeEEEEEEEEECccccEEEEEEEEEE
Confidence            4578888899999995 788888888887777777776654

These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	153
1nep_A	130	EPV20, BNPC2, epididymal secretory protein E1; nie	7e-11
2ag4_A	164	GM2-AP, ganglioside GM2 activator; complex of sing	9e-09
1xwv_A	129	DER F II; beta sheets, allergen; HET: PE3 XPE; 1.8	8e-07

>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A* Length = 130

 Score = 55.4 bits (133), Expect = 7e-11
 Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 7/128 (5%)

Query: 23  ATDVKYCDKNAD--YDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFG 80
               K C        +V V      P  + RG+  + +++ T++      K V+     G
Sbjct: 2   PVKFKDCGSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMG 61

Query: 81  WHIHSET--HDLCD-ETSCPVSTGDFVVAHSQV-LPGFTPPGTYSLKMKMYDATKKQVLT 136
             +       D C     CP+         +++ +    P     ++ ++ D  K Q   
Sbjct: 62  IPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDD-KNQRFF 120

Query: 137 CITFDFSI 144
           C      +
Sbjct: 121 CWQIPIEV 128

>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A* Length = 164

 Score = 50.6 bits (120), Expect = 9e-09
 Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 42/159 (26%)

Query: 25  DVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGG---KLVIDVSYFGW 81
               CD+  D    +  + + P P+      T S+  +T   +S      LV++    G 
Sbjct: 6   SWDNCDEGKD-PAVIRSLTLEPDPIVVPGNVTLSVVGSTSVPLSSPLKVDLVLEKEVAGL 64

Query: 82  HIH--------SETH-DLCDET---------------------SCPVSTGDFVVAHSQV- 110
            I         S T    CD                        CP   G + +  S+  
Sbjct: 65  WIKIPCTDYIGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFV 124

Query: 111 -----LPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSI 144
                LP +   G Y ++  +      + L CI    S+
Sbjct: 125 VPDLELPSWLTTGNYRIESVLSS--SGKRLGCIKIAASL 161

>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A Length = 129

 Score = 44.6 bits (105), Expect = 8e-07
 Identities = 27/116 (23%), Positives = 39/116 (33%), Gaps = 3/116 (2%)

Query: 25  DVKYCDKNADYDVKVHGVDIS-PYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHI 83
           DVK C  N    V V G   S P  + RG+  T       ++     K+ I  S  G  I
Sbjct: 4   DVKDCANNEIKKVMVDGCHGSDPCIIHRGKPFTLEALFDANQNTKTAKIEIKASLDGLEI 63

Query: 84  H--SETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTC 137
                  + C    CP+  G    A          P + ++ + +       VL C
Sbjct: 64  DVPGIDTNACHFMKCPLVKGQQYDAKYTWNVPKIAPKSENVVVTVKLVGDNGVLAC 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	153
1nep_A	130	EPV20, BNPC2, epididymal secretory protein E1; nie	99.96
1xwv_A	129	DER F II; beta sheets, allergen; HET: PE3 XPE; 1.8	99.96
2ag4_A	164	GM2-AP, ganglioside GM2 activator; complex of sing	99.9
3m7o_A	162	Lymphocyte antigen 86; beta sheet, glycoprotein, i	99.84
3mtx_A	151	Protein MD-1; LY86, RP105 associated protein, immu	99.72
3vq2_C	144	Lymphocyte antigen 96; leucine rich repeat MD-2 re	99.61
2e56_A	144	Lymphocyte antigen 96; innate immunity, lipid-bind	99.14
1kmt_A	141	RHO GDP-dissociation inhibitor 1; immunoglobulin f	94.67
1ds6_B	180	RHO GDP-dissociation inhibitor 2; beta sandwhich,	93.97
1doa_B	219	RHO GDI 1, protein (GDP-dissociation inhibitor 1);	93.67
3idu_A	127	Uncharacterized protein; all beta-protein, structu	91.11
2r5o_A	188	Putative ATP binding component of ABC- transporter	90.88
2vtc_A	249	CEL61B, cellulase; hydrolase, glycoside; HET: NAG;	90.67
1lyq_A	104	PCOC copper resistance protein; beta barrel, IG do	90.36
2c9r_A	102	COPC, copper resistance protein C; copper transpor	89.83
1tza_A	134	APAG protein, SOR45; structural genomics, PSI, pro	84.79
1xq4_A	139	Protein APAG; all beta protein, structural genomic	83.95
1xvs_A	126	Protein APAG; MCSG APC26324, midwest center for st	83.59
2f1e_A	127	Protein APAG; APAG protein, xanthomonas axonopodis	83.24
3eja_A	208	Protein GH61E; beta sandwich, fibronectin type III	82.3
4eir_A	223	Polysaccharide monooxygenase-2; GH61, PMO, cellula	81.37

>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*

Probab=99.96  E-value=3.4e-29  Score=178.80  Aligned_cols=123  Identities=15%  Similarity=0.286  Sum_probs=107.1

Q ss_pred             cccceecCcCCC--ccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceEEE--cccCcCCCC-CCCCC
Q 031744           23 ATDVKYCDKNAD--YDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHI--HSETHDLCD-ETSCP   97 (153)
Q Consensus        23 ~~~~~~C~~~~~--~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~--~~~~~d~C~-~~~CP   97 (153)
                      ++.|++|+++.+  ..++|.+|+..||+++||+++++++.|+++++++++++++.+.++|+++  +....|+|+ ++.||
T Consensus         2 ~~~f~~C~~~~~~i~~V~V~~C~~~PC~l~rG~~~~i~i~f~~~~~~~~~~~~v~~~~~gv~vp~~~~~~daC~~g~~CP   81 (130)
T 1nep_A            2 PVKFKDCGSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCP   81 (130)
T ss_dssp             BCCCEESCCCSEEEEEEEEESCSSSSEEEETTCEEEEEEEEEESSCBSCCEEEEEEEETTEEEECCCSCCBGGGTTCCSS
T ss_pred             CcEEEECCCCCCeEeEEEECCCCCCCCEEEcCCeEEEEEEEEcccccceEEEEEEEEECCEEeeccCCCCCcccCCCcCc
Confidence            578999997643  2456666666667799999999999999999999999999999998754  566789997 47999


Q ss_pred             CCCCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEee
Q 031744           98 VSTGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGF  146 (153)
Q Consensus        98 l~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~  146 (153)
                      +++|+ |+|+++++|++.||.++|+++|+|+|++|+. ++|++++++|+.
T Consensus        82 l~~G~~~~y~~~lpV~~~~P~~~~~v~~~L~d~~~~~-l~C~~~~~~I~~  130 (130)
T 1nep_A           82 IEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDDKNQR-FFCWQIPIEVEA  130 (130)
T ss_dssp             BCTTCEEEEEEEEECCTTSCSSEEEEEEEEECTTSCE-EEEEEEEEEEEC
T ss_pred             ccCCcEEEEEEEeEecccCCCccEEEEEEEEcCCCCE-EEEEEEeEEEEC
Confidence            99996 8999999999999999999999999999988 999999999973

>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A

Probab=99.96  E-value=3.8e-29  Score=178.35  Aligned_cols=122  Identities=21%  Similarity=0.346  Sum_probs=108.3

Q ss_pred             cccceecCcCCCccEEEEEE-EEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceE--EEcccCcCCCCCCCCCCC
Q 031744           23 ATDVKYCDKNADYDVKVHGV-DISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGW--HIHSETHDLCDETSCPVS   99 (153)
Q Consensus        23 ~~~~~~C~~~~~~~~~i~~v-~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~--~~~~~~~d~C~~~~CPl~   99 (153)
                      ++.|++|+++....++|.+| +..||+++||+++++++.|++++++++++.++.+.++|+  |++....|+|+++.||++
T Consensus         2 ~~~~~~C~~~~~~~V~V~~C~~~~pC~l~rG~~~~i~~~f~~~~~~~~l~~~v~~~~~g~~ip~p~~~~daC~~~~CPl~   81 (129)
T 1xwv_A            2 QVDVKDCANNEIKKVMVDGCHGSDPCIIHRGKPFTLEALFDANQNTKTAKIEIKASLDGLEIDVPGIDTNACHFMKCPLV   81 (129)
T ss_dssp             BBCCEESSSSCEEEEEETTCCBTSCEEEETTSEEEEEEEEECCSCBSCCEEEEEEEETTEEECCCSCCCBGGGTSCSSBC
T ss_pred             CceEEECcCCCccEEEECCCCCCCCCEEeCCCeEEEEEEEECCCccceEEEEEEEEEcCEEeecCCCCCCccCCccCccc
Confidence            57999999854345677777 677779999999999999999999999999999999887  455677899999999999


Q ss_pred             CCe-eEEEEEEEeCCCCCCeE-EEEEEEEEeCCCceEEEEE-EEEEEEee
Q 031744          100 TGD-FVVAHSQVLPGFTPPGT-YSLKMKMYDATKKQVLTCI-TFDFSIGF  146 (153)
Q Consensus       100 ~G~-~~~~~~~~ip~~~P~g~-y~v~~~l~d~~~~~~i~C~-~~~v~i~~  146 (153)
                      +|+ |+|+++++|++.||.++ |+++|+|+|++| . ++|+ +++++|++
T Consensus        82 ~G~~~~y~~~~~v~~~~P~v~~~~v~~~L~d~~~-~-l~Cf~~~~~~I~~  129 (129)
T 1xwv_A           82 KGQQYDAKYTWNVPKIAPKSENVVVTVKLVGDNG-V-LACAIATHAKIRD  129 (129)
T ss_dssp             TTCEEEEEEEEECCTTSCCBSCEEEEEEEEETTE-E-EEEEEECCEEEEC
T ss_pred             CCEEEEEEEEeEecccCCCCceEEEEEEEEcCCC-c-EEEEecccEEEeC
Confidence            996 89999999999999999 999999999988 7 9999 99999974

>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*

Probab=99.90  E-value=5.7e-23  Score=151.83  Aligned_cols=121  Identities=21%  Similarity=0.408  Sum_probs=105.7

Q ss_pred             ccccceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCc-EEEEEEEE---ce-EEEcccC-------cC
Q 031744           22 RATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGG-KLVIDVSY---FG-WHIHSET-------HD   89 (153)
Q Consensus        22 ~~~~~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~---~~-~~~~~~~-------~d   89 (153)
                      ....|++|+++ .+.++|.+++++|+|+++|+++++++++.+++++++| ++++.+.+   |+ +++|..+       .|
T Consensus         3 ~~~~~~~C~~~-~~~~~i~~v~i~PdP~~~g~~~ti~~~~~l~~~i~~g~k~~v~v~~~~~g~~i~l~~~~~~GSC~y~D   81 (164)
T 2ag4_A            3 SSFSWDNCDEG-KDPAVIRSLTLEPDPIVVPGNVTLSVVGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTFEH   81 (164)
T ss_dssp             CCCEEEESSTT-TCSEEEEEEEEESSSEEESEEEEEEEEEEESSCBCSSCEEEEEEEEEETTEEEECBCBTTBSBCEECC
T ss_pred             ccCEEecCCCC-CceEEEeEEEEeCCCCCCCCceEEEEEEEEeeccCCCCEEEEEEEEEecCceEEeeeeCCcCcccccc
Confidence            35789999885 5689999999999999999999999999999999999 68888776   34 5787776       69


Q ss_pred             CCCCC---------------------CCCCCCCeeEEEEEE------EeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEE
Q 031744           90 LCDET---------------------SCPVSTGDFVVAHSQ------VLPGFTPPGTYSLKMKMYDATKKQVLTCITFDF  142 (153)
Q Consensus        90 ~C~~~---------------------~CPl~~G~~~~~~~~------~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v  142 (153)
                      +|+.+                     +||+++|+|..+.+.      .+|.++|+|+|++++.+.| +|++ ++|+++.+
T Consensus        82 lC~~l~~~~~~~~~~~~~~~~~g~~~~CPi~~G~Y~l~~~~~~lp~~~lP~~l~~G~Y~v~~~~~~-~~~~-l~Ci~~~~  159 (164)
T 2ag4_A           82 FCDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFVVPDLELPSWLTTGNYRIESVLSS-SGKR-LGCIKIAA  159 (164)
T ss_dssp             HHHHHHHHSCTTSCCCTTHHHHTCCCSSCBCSEEEEEEEEEEEECCCCCCTTCSSEEEEEEEEEEE-TTEE-EEEEEEEE
T ss_pred             hhHhhhhhcccccccCcccccCCccccCCCCCcEEEEeeeEeecCcccccCccCCceEEEEEEEec-CCCE-EEEEEEEE
Confidence            99952                     899999999776654      8889999999999999977 7788 99999999


Q ss_pred             EEe
Q 031744          143 SIG  145 (153)
Q Consensus       143 ~i~  145 (153)
                      +|.
T Consensus       160 ~l~  162 (164)
T 2ag4_A          160 SLK  162 (164)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>3m7o_A Lymphocyte antigen 86; beta sheet, glycoprotein, immunity, inflammatory response, I immunity, secreted, immune system; HET: NAG L9R NDG; 1.65A {Mus musculus} PDB: 3t6q_C* 3b2d_C* 3rg1_C*

Probab=99.84  E-value=1.2e-20  Score=137.58  Aligned_cols=113  Identities=21%  Similarity=0.325  Sum_probs=101.2

Q ss_pred             ccceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEcccCcCCCCC-----CCCCC
Q 031744           24 TDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDE-----TSCPV   98 (153)
Q Consensus        24 ~~~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~-----~~CPl   98 (153)
                      +.|++|+...  +   .+++++||++.+|++.++++.+.++++++...+++.+.+++++++..++|+|++     +.||+
T Consensus        40 v~Y~~CD~~q--~---~~vsi~PC~~~~G~nl~i~a~~Ilr~dI~~ly~~l~v~~~~i~l~~~~~~lCe~~~~~~sfCp~  114 (162)
T 3m7o_A           40 VVYQSCDPLQ--D---FGLSIDQCSKQIQSNLNIRFGIILRQDIRKLFLDITLMAKGSSILNYSYPLCEEDQPKFSFCGR  114 (162)
T ss_dssp             EEEEECCTTC--C---CEEEESSCCSEECSSCEEEEEEECSSCCSEEEEEEEEEETTEEEEEEEEEEEETTBSSSSSTTC
T ss_pred             EEEEeCCCCC--C---ceEECCCCCCCCCCcEEEEEEEEEcccceeeEEEEEEEECCEEccccccccccCCCCccccCCc
Confidence            4668897754  2   466999999999999999999999999997678999999999999999999997     37999


Q ss_pred             CCCee-EEEEEEEeCC-CCCCeEEEEEEEEEeCCCceEEEEEEEEE
Q 031744           99 STGDF-VVAHSQVLPG-FTPPGTYSLKMKMYDATKKQVLTCITFDF  142 (153)
Q Consensus        99 ~~G~~-~~~~~~~ip~-~~P~g~y~v~~~l~d~~~~~~i~C~~~~v  142 (153)
                      .+|+. .++..+.+|. .+|+|+|++.+++++++++. ++|.++.+
T Consensus       115 ~KGE~v~~~~~v~~p~~e~P~G~Y~v~aea~~~d~~~-i~Cln~TI  159 (162)
T 3m7o_A          115 RKGEQIYYAGPVNNPGLDVPQGEYQLLLELYNENRAT-VACANATV  159 (162)
T ss_dssp             CTTCEEEEEEECCCCEEECCSEEEEEEEEEEETTCCE-EEEEEEEE
T ss_pred             CCCeEEEEEEEeecCceecCCCcEEEEEEEEcCCCCE-EEEeEEEE
Confidence            99985 8899999998 59999999999999999888 99999965

>3mtx_A Protein MD-1; LY86, RP105 associated protein, immune system; HET: PGT PGE; 2.00A {Gallus gallus} PDB: 3mu3_A*

Probab=99.72  E-value=1.4e-16  Score=114.29  Aligned_cols=119  Identities=14%  Similarity=0.202  Sum_probs=105.9

Q ss_pred             cccceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEcccCcCCCCCC-----CCC
Q 031744           23 ATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDET-----SCP   97 (153)
Q Consensus        23 ~~~~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~~-----~CP   97 (153)
                      .+.|+.|+.-.     -.+++++||+-.+|++..|++.+.+.++++...+++.+.++++.++..++++|++.     -||
T Consensus        18 ei~Y~~CD~~q-----~~~isi~pC~~~~~~~l~I~~~~IlR~dIkelY~~l~v~~~~~~ll~~~e~LCe~~~~~~sfC~   92 (151)
T 3mtx_A           18 EIYYKSCDPQQ-----DFAFSIDRCSDVTTHTFDIRAAMVLRQSIKELYAKVDLIINGKTVLSYSETLCGPGLSKLIFCG   92 (151)
T ss_dssp             EEEEEECCTTC-----CCEEEESCGGGGGGTEEEEEEEEECCSCCSSEEEEEEEEETTEEEEEEEEEEESTTCCCSTTTT
T ss_pred             EEEEEecCCcc-----CcEEEcccCccccCCcEEEEEEEEEhhhhheeEEEEEEEECcEeeeecccccccCCCCcccccC
Confidence            36788996543     34889999999999999999999999999998889999999999999999999973     799


Q ss_pred             CCCCee-EEEEEEEeCC-CCCCeEEEEEEEEEeCCCceEEEEEEEEEEEeec
Q 031744           98 VSTGDF-VVAHSQVLPG-FTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFA  147 (153)
Q Consensus        98 l~~G~~-~~~~~~~ip~-~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~~  147 (153)
                      ..+|+. .++..+.+|. .+|+|+|++-+++++++++. ++|++|.+--..+
T Consensus        93 ~~KGE~i~~~~~v~~pg~~~p~G~Y~vvaea~~~d~~~-I~CLn~Tii~~~~  143 (151)
T 3mtx_A           93 KKKGEHLYYEGPITLGIKEIPQRDYTITARLTNEDRAT-VACADFTVKNYLD  143 (151)
T ss_dssp             CCTTCEEEEEEEEECCCSSCCCEEEEEEEEEEETTSCE-EEEEEEEEEECC-
T ss_pred             ccCCeeEEEEEEeecCceecCCCcEEEEEEEEcCCCCE-EEEeeEEEEEEec
Confidence            999986 9999999998 89999999999999999888 9999998875543

>3vq2_C Lymphocyte antigen 96; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_C* 2z64_C*

Probab=99.61  E-value=1.3e-14  Score=103.71  Aligned_cols=118  Identities=15%  Similarity=0.269  Sum_probs=102.8

Q ss_pred             cccceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEcccCcCCCCCC-----CCC
Q 031744           23 ATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDET-----SCP   97 (153)
Q Consensus        23 ~~~~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~~-----~CP   97 (153)
                      .+.|++|+... .   ..+++++||...+|++..+++.+.+.++++...+++.+..+++++|..++++|.+.     -||
T Consensus        15 eV~Y~~CD~~q-~---~~~isvdpC~~~~gs~~~l~~~~IpR~Dik~Ly~~~~l~~~~~~lp~~~e~iC~g~~~~ySfCg   90 (144)
T 3vq2_C           15 IISYSYCDHLK-F---PISISSEPCIRLRGTNGFVHVEFIPRGNLKYLYFNLFISVNSIELPKRKEVLCHGHDDDYSFCR   90 (144)
T ss_dssp             EEEEEEBTTBC-C---CEEEEEESCCCTTCEEEEEEEEECCSSCCTTEEEEEEEEETTEECCCEEEESCCSSSCSSGGGG
T ss_pred             EEEEEeCCCcc-C---CcEEeccccccccCCCcEEEEEEEEcCcceeEEEEEEEeecccccccCccCcccCCCCcceecc
Confidence            47899998753 1   34569999999999999999999999999988888888888899999999999972     699


Q ss_pred             CCCCe-eEEEEEEEeCCC-CCCeEEEEEEEEEeCC-CceEEEEEEEEEEEe
Q 031744           98 VSTGD-FVVAHSQVLPGF-TPPGTYSLKMKMYDAT-KKQVLTCITFDFSIG  145 (153)
Q Consensus        98 l~~G~-~~~~~~~~ip~~-~P~g~y~v~~~l~d~~-~~~~i~C~~~~v~i~  145 (153)
                      ..+|+ +.|++.+.++.+ +|.|.|++-+++.+++ ... ++|.+|.+-..
T Consensus        91 ~~KGE~i~~~~~~~~~~~~fpkG~Y~~v~e~~~gd~~~~-l~ClnfTii~~  140 (144)
T 3vq2_C           91 ALKGETVNTSIPFSFEGILFPKGHYRCVAEAIAGDTEEK-LFCLNFTIIHR  140 (144)
T ss_dssp             CCTTCCEEEEEEEEECCCCCCSSEEEEEEEEEETTTTEE-EEEEEEEEEC-
T ss_pred             cccCcEEEEEEEeecCcEEccCCcEEEEEEEecCCcccE-EEEeeEEEEEe
Confidence            99996 799999999988 9999999999999988 556 99999988654

>2e56_A Lymphocyte antigen 96; innate immunity, lipid-binding, lipid binding protein; HET: NAG MYR; 2.00A {Homo sapiens} PDB: 2e59_A* 3fxi_C* 3ula_B* 2z65_C*

Probab=99.14  E-value=3.5e-09  Score=74.78  Aligned_cols=120  Identities=14%  Similarity=0.261  Sum_probs=101.1

Q ss_pred             cccceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEcccCcCCCCCC-----CCC
Q 031744           23 ATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDET-----SCP   97 (153)
Q Consensus        23 ~~~~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~~-----~CP   97 (153)
                      .+.|+.|+.-. .   -.+++++||.-.+|.+..+++...+.+++....+++.+...++.+|..++..|.+.     -|-
T Consensus        15 ei~Y~sCD~~q-~---~~sin~~pC~~~~~~~~~l~~~~IpR~Dik~Ly~nl~l~~~~~~~~~~ke~iC~g~dd~ySFC~   90 (144)
T 2e56_A           15 SISYTYCDKMQ-Y---PISINVNPCIELKGSKGLLHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCR   90 (144)
T ss_dssp             EEEEEECSSCC-S---CCEEEEESCCCTTCEEEEEEEEECCSSCCTTCEEEEEEEETTEECCCEEEECSCSSSSSCGGGG
T ss_pred             EEEEeecCccc-C---CcEeccchhhhhccCceEEEEEEEEhhHHHHHhhhheeeeccccccccccccccCCCCCceeec
Confidence            36789997643 1   23788999999999999999999999999999999999999999999999999873     599


Q ss_pred             CCCCe-eEEEEEEEeC-CCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEee
Q 031744           98 VSTGD-FVVAHSQVLP-GFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGF  146 (153)
Q Consensus        98 l~~G~-~~~~~~~~ip-~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~  146 (153)
                      -.+|+ ..++..+..+ ..+|.|.|++.+++++++.++.++|++|.+-...
T Consensus        91 ~lKGEti~t~~p~s~~g~~fpkG~Y~~~~ea~~~~~e~~l~ClNfTii~~~  141 (144)
T 2e56_A           91 ALKGETVNTTISFSFKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQP  141 (144)
T ss_dssp             CCTTCCEEEEEEEEECCCTTCCSEEEEEEEEEETTTTEEEEEEEEEEEECT
T ss_pred             cccCceEEEeeecccCcEecCCCcEEEEEEEecCCchheEEEeeEEEEEcc
Confidence            99997 5677777776 5589999999999999776444999999886543

>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A

Probab=94.67  E-value=0.23  Score=35.09  Aligned_cols=95  Identities=20%  Similarity=0.284  Sum_probs=61.5

Q ss_pred             CCCCceEEEEEEEEeceeecCc-EEEEEEEEceEEEcccCcCCCCCCCCCCCCCeeEEEEEE-EeC-CCCCCeEEEEEEE
Q 031744           49 VARGREATFSISATTDKAISGG-KLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQ-VLP-GFTPPGTYSLKMK  125 (153)
Q Consensus        49 ~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~~~~~~~~-~ip-~~~P~g~y~v~~~  125 (153)
                      ++-|....+.++|.++.++-+| +..-.++-.|+++-....-+=.  ..|- +..|++.... ..| .++-.|+|+++-+
T Consensus        41 iKEG~~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~mlGs--y~P~-~e~y~~~~~~eeaPsG~laRG~Y~a~s~  117 (141)
T 1kmt_A           41 LKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGS--YGPR-AAAYEFLTPVEEAPKGMLARGSYSIKSR  117 (141)
T ss_dssp             EETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEEEEEE--ECCC-SSCEEEECCCEECCCSTTTCEEEEEEEE
T ss_pred             ccCCcEEEEEEEEEEccccccCcEEEEEEEECCEEECcceEeeec--cCCC-CCcceecCCCccCCceeEEeeeeeeeEE
Confidence            5568889999999999887777 5555566678765433221111  1231 2235544321 122 3344579999999


Q ss_pred             EEeCCCceEEEEEEEEEEEeec
Q 031744          126 MYDATKKQVLTCITFDFSIGFA  147 (153)
Q Consensus       126 l~d~~~~~~i~C~~~~v~i~~~  147 (153)
                      +.|+++.. ..=++-.+.|+++
T Consensus       118 F~DDD~~~-hl~~~w~feI~Kd  138 (141)
T 1kmt_A          118 FTDDDKTD-HLSWEWNLTIKKD  138 (141)
T ss_dssp             EECTTCCC-SEEEEEEEEEESC
T ss_pred             EEcCCCcE-EEEEEEeEEEecC
Confidence            99999877 6778888888876

>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A

Probab=93.97  E-value=0.27  Score=36.12  Aligned_cols=95  Identities=21%  Similarity=0.284  Sum_probs=61.3

Q ss_pred             CCCCceEEEEEEEEeceeecCc-EEEEEEEEceEEEcccCcCCCCCCCCCCCCCeeEEEEEE-EeC-CCCCCeEEEEEEE
Q 031744           49 VARGREATFSISATTDKAISGG-KLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQ-VLP-GFTPPGTYSLKMK  125 (153)
Q Consensus        49 ~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~~~~~~~~-~ip-~~~P~g~y~v~~~  125 (153)
                      ++-|....+.++|.+++++-+| +..-.++-.|+++-.... ..+. ..|- ...|++.+.. ..| .++-.|+|+++-+
T Consensus        80 iKEGs~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~-mlGs-y~P~-~e~y~~~~p~eeaPsG~laRG~Y~a~sk  156 (180)
T 1ds6_B           80 LKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATF-MVGS-YGPR-PEEYEFLTPVEEAPKGMLARGTYHNKSF  156 (180)
T ss_dssp             EETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEE-EEEE-ECCC-SSCEEEECCCEECCCSTTTCEEEEEEEE
T ss_pred             ecCCcEEEEEEEEEEecccccCcEEEEEEEECCEEECCceE-eeec-cCCC-CCceeecCCCccCCcceeeeeeeeeeEE
Confidence            4568888889999998877777 555556667776533221 1111 1231 2225544331 122 3344589999999


Q ss_pred             EEeCCCceEEEEEEEEEEEeec
Q 031744          126 MYDATKKQVLTCITFDFSIGFA  147 (153)
Q Consensus       126 l~d~~~~~~i~C~~~~v~i~~~  147 (153)
                      +.|+++.. ..=++-.+.|+++
T Consensus       157 F~DDD~~~-hl~~~wsfeI~Kd  177 (180)
T 1ds6_B          157 FTDDDKQD-HLSWEWNLSIKKE  177 (180)
T ss_dssp             EECTTCCC-CEEEEEEEEEESS
T ss_pred             EEcCCCce-EEEEEEEEEEeeC
Confidence            99999877 7778888888876

>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*

Probab=93.67  E-value=0.29  Score=36.98  Aligned_cols=96  Identities=18%  Similarity=0.294  Sum_probs=61.8

Q ss_pred             CCCCceEEEEEEEEeceeecCc-EEEEEEEEceEEEcccCcCCCCCCCCCCCCCeeEEEEEE-EeC-CCCCCeEEEEEEE
Q 031744           49 VARGREATFSISATTDKAISGG-KLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQ-VLP-GFTPPGTYSLKMK  125 (153)
Q Consensus        49 ~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~~~~~~~~-~ip-~~~P~g~y~v~~~  125 (153)
                      ++-|..+.+.++|.+++++-+| +..-.++..|+++-.... ..+. ..|-. -.|++.+.. ..| .++-.|+|+++-+
T Consensus       119 IKEGs~Y~lki~FkV~~eIVsGLkY~q~VkR~GI~Vdk~~~-MlGS-Y~P~~-e~y~~~~p~EeAPSGmLARG~Y~akSk  195 (219)
T 1doa_B          119 LKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY-MVGS-YGPRA-EEYEFLTPMEEAPKGMLARGSYNIKSR  195 (219)
T ss_dssp             EETTCEEEEEEEECBCSSCEEEEEEEEEEEETTEEEEEEEE-EEEE-ECCCS-SCEEEECCCEECCCTTSCCSEEEEEEE
T ss_pred             ecCCCEEEEEEEEEEecceecCcEEEEEEEECCeEECCcce-eeec-cCCCC-CcccccCCCccCCccceeeeeeeeeEE
Confidence            5568888889999999887677 555566677886643322 1111 12322 125543321 122 3344579999999


Q ss_pred             EEeCCCceEEEEEEEEEEEeecc
Q 031744          126 MYDATKKQVLTCITFDFSIGFAS  148 (153)
Q Consensus       126 l~d~~~~~~i~C~~~~v~i~~~~  148 (153)
                      +.|++++. ..=++-.+.|+++-
T Consensus       196 F~DDD~~~-hL~~eWsfeI~KdW  217 (219)
T 1doa_B          196 FTDDDRTD-HLSWEWNLTIKKEW  217 (219)
T ss_dssp             EECTTCCC-CEEEEEEEEEESST
T ss_pred             EEeCCCce-EEEEEEEEEEecCC
Confidence            99999877 77788889888763

>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A

Probab=91.11  E-value=2.4  Score=29.09  Aligned_cols=79  Identities=15%  Similarity=0.202  Sum_probs=54.8

Q ss_pred             cEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEcccCcCCCCCCCCCCCCCe-eEEEEEEEeCCC
Q 031744           36 DVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGD-FVVAHSQVLPGF  114 (153)
Q Consensus        36 ~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~-~~~~~~~~ip~~  114 (153)
                      .+.+ +++ .|..+..|+..+++++..-......+..++.++.+|-.+-..        .-.+.+|. -++++++. |. 
T Consensus        18 DL~V-~is-~P~~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~--------~v~La~G~s~tv~f~~~-~~-   85 (127)
T 3idu_A           18 DLTV-EIK-GPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNW--------TVSLGPKEEKVLTFNWT-PT-   85 (127)
T ss_dssp             CEEE-EEE-SCSEECTTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEE--------EEEECTTCEEEEEEEEC-CS-
T ss_pred             CeEE-Eec-CCCcccCCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeE--------EeccCCCCeEEEEEEEE-cC-
Confidence            4677 665 788899999999999877666555556778887777543222        11478886 46666654 32 


Q ss_pred             CCCeEEEEEEEEE
Q 031744          115 TPPGTYSLKMKMY  127 (153)
Q Consensus       115 ~P~g~y~v~~~l~  127 (153)
                       ..|.|++++.+-
T Consensus        86 -~~G~~~v~AvVD   97 (127)
T 3idu_A           86 -QEGMYRINATVD   97 (127)
T ss_dssp             -SCEEEEEEEEES
T ss_pred             -CCcEEEEEEEEc
Confidence             389999998754

>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}

Probab=90.88  E-value=3.4  Score=29.79  Aligned_cols=92  Identities=16%  Similarity=0.126  Sum_probs=59.9

Q ss_pred             cEEEEEEEEe-----c-CCCCCCceEEEEEEEEeceeecCcEEEEEEEE-ceEEEcccCcCCCCCCCC-C--CCCCee-E
Q 031744           36 DVKVHGVDIS-----P-YPVARGREATFSISATTDKAISGGKLVIDVSY-FGWHIHSETHDLCDETSC-P--VSTGDF-V  104 (153)
Q Consensus        36 ~~~i~~v~i~-----P-c~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~-~~~~~~~~~~d~C~~~~C-P--l~~G~~-~  104 (153)
                      .++|.++.+.     | ..+..|+++++++...+.+++....+-+.++- .|..+...+... ....= |  +.+|++ .
T Consensus        47 ~a~I~~v~l~d~~G~~~~~~~~Ge~v~l~i~~~~~~~i~~~v~G~~Ik~~~G~~I~g~nT~~-~~~~~~~~~~~~G~~~~  125 (188)
T 2r5o_A           47 GAKIIDYHIQSAGVDFPPSLTGNQQTDFLMKVVFEYDFDCVVPGILIKTLDGLFLYGTNSFL-ASEGRENISVSRGDVRV  125 (188)
T ss_dssp             SEEEEEEEEEETTEESCSSEETTCEEEEEEEEEESSCEEEEEEEEEEEETTCCEEEEEEHHH-HTTTCCCEEECTTCEEE
T ss_pred             cEEEEEEEEEECCCCEeeEEeCCCEEEEEEEEEECCcCCccEEEEEEECCCCCEEEecCccc-ccccccccccCCCCEEE
Confidence            6889999884     2 23789999999999999988765544333322 244554432110 01111 1  478875 6


Q ss_pred             EEEEEEeCCCCCCeEEEEEEEEEeCC
Q 031744          105 VAHSQVLPGFTPPGTYSLKMKMYDAT  130 (153)
Q Consensus       105 ~~~~~~ip~~~P~g~y~v~~~l~d~~  130 (153)
                      ..+.+++  .+.+|.|.+.+.+.+.+
T Consensus       126 v~f~f~l--~L~~G~Y~lsv~i~~~~  149 (188)
T 2r5o_A          126 FKFSLPV--DLNSGDYLLSFGISAGN  149 (188)
T ss_dssp             EEEEEEC--CBCSEEEEEEEEEEEEE
T ss_pred             EEEEEec--ccCCCeEEEEEEEecCC
Confidence            6666664  47799999999998865

>2vtc_A CEL61B, cellulase; hydrolase, glycoside; HET: NAG; 1.6A {Hypocrea jecorina}

Probab=90.67  E-value=0.67  Score=35.63  Aligned_cols=38  Identities=16%  Similarity=0.413  Sum_probs=30.2

Q ss_pred             EEEEEeCCCCCCeEEEEEEEEE-----eC-CCceE-EEEEEEEEE
Q 031744          106 AHSQVLPGFTPPGTYSLKMKMY-----DA-TKKQV-LTCITFDFS  143 (153)
Q Consensus       106 ~~~~~ip~~~P~g~y~v~~~l~-----d~-~~~~~-i~C~~~~v~  143 (153)
                      ++++.||+.+|+|+|-+|+++.     ++ .|.|- +.|+++.|+
T Consensus       160 ~~~~tIP~~l~~G~YLlR~E~iALH~a~~~ggaQfY~~Caqi~Vt  204 (249)
T 2vtc_A          160 KWTVKIPSSLRPGNYVFRHELLAAHGASSANGMQNYPQCVNIAVT  204 (249)
T ss_dssp             EEEEECCTTBCSEEEEEEEEEEECTTTTSTTCCEEEEEEEEEEEE
T ss_pred             eeEEEcCCCCCCcceEEEEEeeeccccccCCCceechhhEEEEEc
Confidence            5678999999999999999988     33 33332 789999886

>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A

Probab=90.36  E-value=0.84  Score=30.29  Aligned_cols=27  Identities=15%  Similarity=0.161  Sum_probs=21.9

Q ss_pred             EEEEEeCCCCCCeEEEEEEEEEeCCCce
Q 031744          106 AHSQVLPGFTPPGTYSLKMKMYDATKKQ  133 (153)
Q Consensus       106 ~~~~~ip~~~P~g~y~v~~~l~d~~~~~  133 (153)
                      .+.++++ -.++|.|+|+|+....||..
T Consensus        68 ~~~~~l~-~L~~G~YtV~WrvvS~DGH~   94 (104)
T 1lyq_A           68 MVIIPRE-PLPAGTYRVDWRAVSSDTHP   94 (104)
T ss_dssp             EEEEESS-CCCSEEEEEEEEECCTTSCC
T ss_pred             EEEEECC-CCCCceEEEEEEEEecCCCc
Confidence            3455566 57899999999999999876

>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A

Probab=89.83  E-value=1  Score=29.74  Aligned_cols=27  Identities=11%  Similarity=0.071  Sum_probs=21.8

Q ss_pred             EEEEEeCCCCCCeEEEEEEEEEeCCCce
Q 031744          106 AHSQVLPGFTPPGTYSLKMKMYDATKKQ  133 (153)
Q Consensus       106 ~~~~~ip~~~P~g~y~v~~~l~d~~~~~  133 (153)
                      .+.++++ ..++|.|+|+|+....||..
T Consensus        66 ~~~~~l~-~L~~G~YtV~WrvvS~DGH~   92 (102)
T 2c9r_A           66 MVITPAS-PLTAGTYKVDWRAVSSDTFP   92 (102)
T ss_dssp             EEEEESS-CCCSEEEEEEEEECCTTCCC
T ss_pred             EEEEECC-CCCCceEEEEEEEEecCCCc
Confidence            3455565 67899999999999999876

>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1

Probab=84.79  E-value=4.7  Score=28.02  Aligned_cols=51  Identities=18%  Similarity=0.265  Sum_probs=37.6

Q ss_pred             CCCC-CCCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEeecc
Q 031744           95 SCPV-STGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFAS  148 (153)
Q Consensus        95 ~CPl-~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~~~  148 (153)
                      .-|+ .+|+ |.|+-...++  .|.|.....+.+.+++|+. +-+---.|.+..+.
T Consensus        71 eqP~L~PGe~F~YtSg~~L~--Tp~G~M~G~y~m~~~~G~~-F~v~Ip~F~L~~P~  123 (134)
T 1tza_A           71 ETPTIPPNTAYQYTSGTVLD--TPFGIMYGTYGMVSESGEH-FNAIIKPFRLATPG  123 (134)
T ss_dssp             BCCEECTTEEEEEEEEEEES--SSEEEEEEEEEEEETTCCE-EEEEEEEEEEECTT
T ss_pred             CCCcCCCCCceEEcCCcCcC--CCceEEEEEEEEEECCCCE-EEEECCCeEccCCC
Confidence            4554 7897 6666665555  5799999999999999987 77666677776554

>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1

Probab=83.95  E-value=4.9  Score=28.09  Aligned_cols=51  Identities=20%  Similarity=0.305  Sum_probs=37.6

Q ss_pred             CCCC-CCCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEeecc
Q 031744           95 SCPV-STGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFAS  148 (153)
Q Consensus        95 ~CPl-~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~~~  148 (153)
                      .-|+ .+|+ |.|+-...++  .|.|.....+.+.+++|+. +-+---.|.+..+.
T Consensus        76 eqPvL~PGe~F~YtSg~~L~--Tp~G~M~G~y~m~~~~G~~-F~v~Ip~F~L~~P~  128 (139)
T 1xq4_A           76 QQPLLAPGETFEYTSGCPLP--TPIGTMRGTYHCVGENGIP-FEVPIAEFLLAMPR  128 (139)
T ss_dssp             CCCEECTTCEEEEEEEEEES--SSEEEEEEEEEEEETTSCE-EEEEEEEEEEECTT
T ss_pred             CCCcCCCCCceEEcCCcCcC--CCceEEEEEEEEEeCCCCE-EEEECCCeEcCCCC
Confidence            5665 7887 6666665555  5799999999999999987 76666667766543

>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1

Probab=83.59  E-value=4.6  Score=27.71  Aligned_cols=51  Identities=20%  Similarity=0.283  Sum_probs=36.9

Q ss_pred             CCCC-CCCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEeecc
Q 031744           95 SCPV-STGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFAS  148 (153)
Q Consensus        95 ~CPl-~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~~~  148 (153)
                      .-|+ .+|+ |.|+-...++  .|.|.....+.+.+++|+. +-+---.|.+..+.
T Consensus        71 ~qP~L~PGe~f~YtSg~~L~--tp~G~M~G~y~m~~~~G~~-F~v~Ip~F~L~~P~  123 (126)
T 1xvs_A           71 EQPRIKANDEYTYSSGTALD--TPVGVMQGQYLMIDEQGES-FTVEIEPFRLAVPH  123 (126)
T ss_dssp             BCCEECTTCEEEEEEEEEES--SSEEEEEEEEEEECTTSCE-EEEEEEEEEEECCC
T ss_pred             CCCcCCCCCceEEeCCcCcC--CCcEEEEEEEEEEECCCCE-EEEECCceEcCCcc
Confidence            4554 7886 6666665555  5789999999999999887 66666666666543

>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}

Probab=83.24  E-value=6  Score=27.15  Aligned_cols=50  Identities=16%  Similarity=0.231  Sum_probs=35.6

Q ss_pred             CCCC-CCCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEeec
Q 031744           95 SCPV-STGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFA  147 (153)
Q Consensus        95 ~CPl-~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~~  147 (153)
                      .-|+ .+|+ |.|+-...++  .|.|.....+.+.+++|+. +-+---.|.+..+
T Consensus        72 ~qP~L~PGe~f~YtSg~~L~--tp~G~M~G~y~m~~~~G~~-F~v~Ip~F~L~~P  123 (127)
T 2f1e_A           72 EQPWLRPGEAFHYTSGVLLE--TEQGQMQGHYDMVADDGTE-FIAPIAAFVLSVP  123 (127)
T ss_dssp             BCCEECTTCEEEEEEEEEES--SSCEEEEEEEEEEETTCCE-EEEEEEEEEEC--
T ss_pred             CCCcCCCCCceEEeCCcCcC--CCcEEEEEEEEEEECCCCE-EEEECCceEcCCC
Confidence            4554 7886 6776666665  5789999999999999887 6666666666544

>3eja_A Protein GH61E; beta sandwich, fibronectin type III fold, metal site, magnes unknown function; HET: NAG; 1.90A {Thielavia terrestris} PDB: 3eii_A*

Probab=82.30  E-value=5.3  Score=29.79  Aligned_cols=39  Identities=15%  Similarity=0.336  Sum_probs=30.1

Q ss_pred             EEEEEEeCCCCCCeEEEEEEEEEeC------CCceE-EEEEEEEEE
Q 031744          105 VAHSQVLPGFTPPGTYSLKMKMYDA------TKKQV-LTCITFDFS  143 (153)
Q Consensus       105 ~~~~~~ip~~~P~g~y~v~~~l~d~------~~~~~-i~C~~~~v~  143 (153)
                      .++++.||+.+|+|.|-+|.++.-=      .+.|- +.|+++.|+
T Consensus       117 ~~~~~~iP~~l~~G~YllR~E~ialh~a~~~~~~qfY~~Caqi~Vt  162 (208)
T 3eja_A          117 SSFAVPIPPCIKSGYYLLRAEQIGLHVAQSVGGAQFYISCAQLSVT  162 (208)
T ss_dssp             CEEEEECCSSBCSEEEEEEEEEEECTTTTSTTCCEEEEEEEEEEEE
T ss_pred             CceEEeccCCCCCcceEEEeeeeeecccccCCCCcccccceEEEEe
Confidence            3567799999999999999987762      23332 689999886

>4eir_A Polysaccharide monooxygenase-2; GH61, PMO, cellulase, biofuels copper monooxygenase, peroxide, superoxide, CBP21, beta-SAN fold, secreted; HET: HIC NAG GOL; 1.10A {Neurospora crassa}

Probab=81.37  E-value=6.7  Score=29.56  Aligned_cols=38  Identities=26%  Similarity=0.525  Sum_probs=29.5

Q ss_pred             EEEEEeCCCCCCeEEEEEEEEEeC------CCceE-EEEEEEEEE
Q 031744          106 AHSQVLPGFTPPGTYSLKMKMYDA------TKKQV-LTCITFDFS  143 (153)
Q Consensus       106 ~~~~~ip~~~P~g~y~v~~~l~d~------~~~~~-i~C~~~~v~  143 (153)
                      ++++.||+.+|+|.|-+|.|+.-=      .+.|- +.|+++.|+
T Consensus       133 ~~~~~iP~~l~~G~YllR~E~Ialh~a~~~g~~qfY~~Caqi~Vt  177 (223)
T 4eir_A          133 RHSIKIPECIAPGQYLLRAEMIALHAASNYPGAQFYMECAQLNVV  177 (223)
T ss_dssp             EEEEECCTTSCCEEEEEEEEEEECTTCSSSSCCEEEEEEEEEEEE
T ss_pred             eEEEECCCCCCCCceEEEEeeeeccccccCCCCcccccceEEEEe
Confidence            567799999999999999987662      23332 689999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	153
d2ag4a1	163	b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator	5e-24
d1nepa_	130	b.1.18.7 (A:) Epididymal secretory protein E1 (Nie	2e-16
d1xwva_	129	b.1.18.7 (A:) Major mite allergen {House-dust mite	6e-14

>d2ag4a1 b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: All beta proteins
fold: Ganglioside M2 (gm2) activator
superfamily: Ganglioside M2 (gm2) activator
family: Ganglioside M2 (gm2) activator
domain: Ganglioside M2 (gm2) activator
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (221), Expect = 5e-24
 Identities = 27/161 (16%), Positives = 47/161 (29%), Gaps = 42/161 (26%)

Query: 23  ATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGG---KLVIDVSYF 79
           +     CD+  D    +  + + P P+      T S+  +T   +S      LV++    
Sbjct: 3   SFSWDNCDEGKD-PAVIRSLTLEPDPIVVPGNVTLSVVGSTSVPLSSPLKVDLVLEKEVA 61

Query: 80  GWHIHS---------ETHDLCDET---------------------SCPVSTGDFVVAHSQ 109
           G  I                CD                        CP   G + +  S+
Sbjct: 62  GLWIKIPCTDYIGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSLPKSE 121

Query: 110 V------LPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSI 144
                  LP +   G Y ++  +      + L CI    S+
Sbjct: 122 FVVPDLELPSWLTTGNYRIESVLSS--SGKRLGCIKIAASL 160

>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Epididymal secretory protein E1 (Niemann-Pick C2 protein)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.8 bits (168), Expect = 2e-16
 Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 7/126 (5%)

Query: 25  DVKYCDKNAD--YDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWH 82
             K C        +V V      P  + RG+  + +++ T++      K V+     G  
Sbjct: 4   KFKDCGSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIP 63

Query: 83  IHSETHDLCDE---TSCPVSTGDFVVAHSQV-LPGFTPPGTYSLKMKMYDATKKQVLTCI 138
           +     +         CP+         +++ +    P     ++ ++ D  K Q   C 
Sbjct: 64  VPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDD-KNQRFFCW 122

Query: 139 TFDFSI 144
                +
Sbjct: 123 QIPIEV 128

>d1xwva_ b.1.18.7 (A:) Major mite allergen {House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]} Length = 129

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Major mite allergen
species: House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]

 Score = 62.2 bits (151), Expect = 6e-14
 Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 6/125 (4%)

Query: 25  DVKYCDKNADYDVKVHG-VDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHI 83
           DVK C  N    V V G     P  + RG+  T       ++     K+ I  S  G  I
Sbjct: 4   DVKDCANNEIKKVMVDGCHGSDPCIIHRGKPFTLEALFDANQNTKTAKIEIKASLDGLEI 63

Query: 84  H--SETHDLCDETSCPVSTG-DFVVAHSQVLPGFTPPG-TYSLKMKMYDATKKQVLTCIT 139
                  + C    CP+  G  +   ++  +P   P      + +K+       +   I 
Sbjct: 64  DVPGIDTNACHFMKCPLVKGQQYDAKYTWNVPKIAPKSENVVVTVKLVGD-NGVLACAIA 122

Query: 140 FDFSI 144
               I
Sbjct: 123 THAKI 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	153
d1nepa_	130	Epididymal secretory protein E1 (Niemann-Pick C2 p	99.96
d1xwva_	129	Major mite allergen {House-dust mite (Dermatophago	99.94
d2ag4a1	163	Ganglioside M2 (gm2) activator {Human (Homo sapien	99.87
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	95.87
d1kmta_	138	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	95.83
d1ds6b_	179	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	95.2
d1g0da1	135	Transglutaminase N-terminal domain {Red sea bream	91.88
d1ix2a_	102	Copper resistance protein C (CopC, PcoC) {Escheric	91.08
d2c9qa1	102	Copper resistance protein C (CopC, PcoC) {Pseudomo	89.9
d1xq4a_	123	ApaG {Bordetella pertussis [TaxId: 520]}	86.83
d1tzaa_	132	ApaG {Shewanella oneidensis [TaxId: 70863]}	85.31
d1vjja1	140	Transglutaminase N-terminal domain {Human (Homo sa	84.6

>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Epididymal secretory protein E1 (Niemann-Pick C2 protein)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=5.4e-30  Score=181.21  Aligned_cols=123  Identities=15%  Similarity=0.283  Sum_probs=108.2

Q ss_pred             cccceecCcCCC--ccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceE--EEcccCcCCCCC-CCCC
Q 031744           23 ATDVKYCDKNAD--YDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGW--HIHSETHDLCDE-TSCP   97 (153)
Q Consensus        23 ~~~~~~C~~~~~--~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~--~~~~~~~d~C~~-~~CP   97 (153)
                      .++|++||+..+  ..++|++|+..||+++||+++++++.|+++++++++++++.+.++|+  |++..+.|+|+. ++||
T Consensus         2 ~v~f~~Cg~~~~~~~~v~I~~C~~~PC~l~rG~~~~i~i~f~~~~~~~~~~~~v~~~~~gi~ip~p~~~~d~C~~g~~CP   81 (130)
T d1nepa_           2 PVKFKDCGSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCP   81 (130)
T ss_dssp             BCCCEESCCCSEEEEEEEEESCSSSSEEEETTCEEEEEEEEEESSCBSCCEEEEEEEETTEEEECCCSCCBGGGTTCCSS
T ss_pred             CcceEeCCCCCCcEEEEEEeCCCCCCCEeeCCCEEEEEEEEEcCcccceEEEEEEEEECCEEecccCCCCcccccCCcCC
Confidence            578999997532  24566666667888999999999999999999999999999999986  666667899985 7999


Q ss_pred             CCCCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEee
Q 031744           98 VSTGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGF  146 (153)
Q Consensus        98 l~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~  146 (153)
                      +++|+ |+|+++++|++.+|.++|+++|+|+|++|++ ++|++++++|+.
T Consensus        82 l~~G~~~~y~~~~~I~~~~P~~~~~v~~~l~d~~~~~-i~Cf~v~~~I~~  130 (130)
T d1nepa_          82 IEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDDKNQR-FFCWQIPIEVEA  130 (130)
T ss_dssp             BCTTCEEEEEEEEECCTTSCSSEEEEEEEEECTTSCE-EEEEEEEEEEEC
T ss_pred             ccCCceEEEEEEEEcchhhccEEEEEEEEEEcCCCCE-EEEEEEeeEEEC
Confidence            99996 8999999999999999999999999999988 999999999973

>d1xwva_ b.1.18.7 (A:) Major mite allergen {House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Major mite allergen
species: House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]

Probab=99.94  E-value=8.6e-28  Score=169.62  Aligned_cols=122  Identities=20%  Similarity=0.322  Sum_probs=107.0

Q ss_pred             cccceecCcCCCccEEEEEEE-EecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceE--EEcccCcCCCCCCCCCCC
Q 031744           23 ATDVKYCDKNADYDVKVHGVD-ISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGW--HIHSETHDLCDETSCPVS   99 (153)
Q Consensus        23 ~~~~~~C~~~~~~~~~i~~v~-i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~--~~~~~~~d~C~~~~CPl~   99 (153)
                      .++|++|+++....++|.+|+ ..||.++||+++++++.|+++++.++.++++.+.++|+  |+|..+.|+|++++||++
T Consensus         2 ~v~~~~Cg~g~~~~V~V~~C~~~~PC~l~rG~~~~~~~~F~~~~d~~~l~~~v~~~~~gv~vP~p~~~~daC~~~~CPl~   81 (129)
T d1xwva_           2 QVDVKDCANNEIKKVMVDGCHGSDPCIIHRGKPFTLEALFDANQNTKTAKIEIKASLDGLEIDVPGIDTNACHFMKCPLV   81 (129)
T ss_dssp             BBCCEESSSSCEEEEEETTCCBTSCEEEETTSEEEEEEEEECCSCBSCCEEEEEEEETTEEECCCSCCCBGGGTSCSSBC
T ss_pred             cceeEECCCCCEEEEEECCCCCCCCCEEECCCeEEEEEEEEcCcccceEEEEEEEEECCEEecCcccCcCCCCCccCCcc
Confidence            578999998654457777776 46888999999999999999999988899999999986  666778899999999999


Q ss_pred             CCe-eEEEEEEEeCCCCCCe-EEEEEEEEEeCCCceEEEEEEEEEEEe
Q 031744          100 TGD-FVVAHSQVLPGFTPPG-TYSLKMKMYDATKKQVLTCITFDFSIG  145 (153)
Q Consensus       100 ~G~-~~~~~~~~ip~~~P~g-~y~v~~~l~d~~~~~~i~C~~~~v~i~  145 (153)
                      +|+ |+|+++++|+++||.+ +++++|+|.|++|.. +.|++|+++|+
T Consensus        82 ~G~~~~y~~~~~V~~~~P~v~~v~v~~~L~~~~g~~-~C~~~~~~~i~  128 (129)
T d1xwva_          82 KGQQYDAKYTWNVPKIAPKSENVVVTVKLVGDNGVL-ACAIATHAKIR  128 (129)
T ss_dssp             TTCEEEEEEEEECCTTSCCBSCEEEEEEEEETTEEE-EEEEECCEEEE
T ss_pred             CCeEEEEEEEeEccccCCCceEEEEEEEEECCCCeE-EEEEEEEEEEe
Confidence            996 9999999999999999 699999999988754 55589999997

>d2ag4a1 b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Ganglioside M2 (gm2) activator
superfamily: Ganglioside M2 (gm2) activator
family: Ganglioside M2 (gm2) activator
domain: Ganglioside M2 (gm2) activator
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.5e-22  Score=144.96  Aligned_cols=121  Identities=23%  Similarity=0.463  Sum_probs=98.1

Q ss_pred             ccccceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCc-EEEEEEEEc--e--EEEccc------Cc-C
Q 031744           22 RATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGG-KLVIDVSYF--G--WHIHSE------TH-D   89 (153)
Q Consensus        22 ~~~~~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~--~--~~~~~~------~~-d   89 (153)
                      ++..|++|+++. +.+.+.+++++|+|+.+|+++++++++.++++++++ ++++.+++.  +  +++|-.      +| |
T Consensus         2 ~~f~w~nC~~~~-d~~~i~~l~l~PdP~~~gg~lti~~~~~~~~~i~~~~~v~l~v~k~~~~~~i~iPC~~~~GSC~y~d   80 (163)
T d2ag4a1           2 SSFSWDNCDEGK-DPAVIRSLTLEPDPIVVPGNVTLSVVGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTFEH   80 (163)
T ss_dssp             CCCEEEESSTTT-CSEEEEEEEEESSSEEESEEEEEEEEEEESSCBCSSCEEEEEEEEEETTEEEECBCBTTBSBCEECC
T ss_pred             CceEeccCCCCC-CceEEeeEEEecCCcCCCceEEEEEEEEEeeecCCCcEEEEEEEEEeccEEEEeeeecccccccchh
Confidence            357899999765 489999999999999999999999999999999998 677777652  2  354422      22 4


Q ss_pred             CCC-------------CC--------CCCCCCCeeEEEEE------EEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEE
Q 031744           90 LCD-------------ET--------SCPVSTGDFVVAHS------QVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDF  142 (153)
Q Consensus        90 ~C~-------------~~--------~CPl~~G~~~~~~~------~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v  142 (153)
                      +|+             ..        +||+++|+|+++.+      +.+|.++|+|+|++++.+ +++|++ ++|+++.+
T Consensus        81 ~C~~~~~~~~~~~~c~~~~~~~~~~c~CPi~~G~y~l~~s~~~ip~v~LP~~l~~G~Y~v~~~~-~~~g~~-l~Ci~~~~  158 (163)
T d2ag4a1          81 FCDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFVVPDLELPSWLTTGNYRIESVL-SSSGKR-LGCIKIAA  158 (163)
T ss_dssp             HHHHHHHHSCTTSCCCTTHHHHTCCCSSCBCSEEEEEEEEEEEECCCCCCTTCSSEEEEEEEEE-EETTEE-EEEEEEEE
T ss_pred             hhhhHhhcccccccCcchhhccCCcccCCcCCcEEEecceeeccccccccCccCCceEEEEEEE-eCCCCE-EEEEEEEE
Confidence            454             31        69999999987664      357888999999999998 557888 99999999


Q ss_pred             EEe
Q 031744          143 SIG  145 (153)
Q Consensus       143 ~i~  145 (153)
                      +|+
T Consensus       159 slk  161 (163)
T d2ag4a1         159 SLK  161 (163)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=95.87  E-value=0.05  Score=34.70  Aligned_cols=76  Identities=18%  Similarity=0.361  Sum_probs=51.8

Q ss_pred             CCCCceEEEEEEEEeceee--cCcEEEEEEEEceEEEcccCcCCCCCCCCCCCCCe-eEEEEEEEeCCCCCCeEEEEEEE
Q 031744           49 VARGREATFSISATTDKAI--SGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGD-FVVAHSQVLPGFTPPGTYSLKMK  125 (153)
Q Consensus        49 ~~~G~~~~i~~~~~~~~~i--~~~~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~  125 (153)
                      ++.|+.+++.++.+.....  .+..+.+.+ =-||......        =++.+|+ .+.++++.+|...++|.|.++++
T Consensus        13 v~pG~~~~~~vtVtN~g~~~~~~~~~~~~~-P~GW~v~~~~--------~~L~pG~s~~~~~~Vt~p~~a~~G~Y~i~~~   83 (103)
T d1w8oa1          13 LEPGQQVTVPVAVTNQSGIAVPKPSLQLDA-SPDWQVQGSV--------EPLMPGRQAKGQVTITVPAGTTPGRYRVGAT   83 (103)
T ss_dssp             ECTTCEEEEEEEEECCSSSCBSSCEEEEEC-CTTSEEEEEE--------CCBCTTCEEEEEEEEECCTTCCCEEEEEEEE
T ss_pred             eCCCCeEEEEEEEEeCCCCceeeeeEEEcC-CCCccccCcc--------eeeCCCCcEEEEEEEECCCCCCCceEEEEEE
Confidence            3449999998887655432  222333332 1355442221        1478997 59999999999999999999999


Q ss_pred             EEeCCCce
Q 031744          126 MYDATKKQ  133 (153)
Q Consensus       126 l~d~~~~~  133 (153)
                      +.++++..
T Consensus        84 a~~~~~~~   91 (103)
T d1w8oa1          84 LRTSAGNA   91 (103)
T ss_dssp             EEETTEEE
T ss_pred             EEeCCcce
Confidence            99877654

>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.029  Score=37.91  Aligned_cols=95  Identities=20%  Similarity=0.290  Sum_probs=62.9

Q ss_pred             CCCCceEEEEEEEEeceeecCc-EEEEEEEEceEEEcccCcCCCCCCCCCCCCCeeEEEEEE-EeC-CCCCCeEEEEEEE
Q 031744           49 VARGREATFSISATTDKAISGG-KLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQ-VLP-GFTPPGTYSLKMK  125 (153)
Q Consensus        49 ~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~~~~~~~~-~ip-~~~P~g~y~v~~~  125 (153)
                      ++-|....+++.|.+++++-+| +..-.++-.|+++-....- .+ ...|-. ..|++.... ..| .++-.|+|+++-+
T Consensus        40 IKEGs~Y~i~i~F~V~~eivsGLky~q~v~r~Gi~Vdk~~~m-vG-sy~P~~-e~y~~~~p~eeaPsG~laRG~Y~a~s~  116 (138)
T d1kmta_          40 LKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYM-VG-SYGPRA-AAYEFLTPVEEAPKGMLARGSYSIKSR  116 (138)
T ss_dssp             EETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEEE-EE-EECCCS-SCEEEECCCEECCCSTTTCEEEEEEEE
T ss_pred             ecCCCEEEEEEEEEEccccccCcEEEEEEEECCEEEcceeEe-ee-ccCCCC-CcEEEeCCCccCCceEEEeeeeeEEEE
Confidence            6679999999999999887666 5555677788876433221 11 123332 235443321 222 3344589999999


Q ss_pred             EEeCCCceEEEEEEEEEEEeec
Q 031744          126 MYDATKKQVLTCITFDFSIGFA  147 (153)
Q Consensus       126 l~d~~~~~~i~C~~~~v~i~~~  147 (153)
                      +.|+++.. ..=++..++|.++
T Consensus       117 f~Ddd~~~-~l~~~w~feI~Kd  137 (138)
T d1kmta_         117 FTDDDKTD-HLSWEWNLTIKKD  137 (138)
T ss_dssp             EECTTCCC-SEEEEEEEEEESC
T ss_pred             EEcCCCcE-EEEEEEEEEEecC
Confidence            99999886 6778888888765

>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.044  Score=38.57  Aligned_cols=95  Identities=21%  Similarity=0.287  Sum_probs=61.9

Q ss_pred             CCCCceEEEEEEEEeceeecCc-EEEEEEEEceEEEcccCcCCCCCCCCCCCCCeeEEEEEE-EeC-CCCCCeEEEEEEE
Q 031744           49 VARGREATFSISATTDKAISGG-KLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQ-VLP-GFTPPGTYSLKMK  125 (153)
Q Consensus        49 ~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~~~~~~~~-~ip-~~~P~g~y~v~~~  125 (153)
                      ++-|..+.+.++|.+.+++-+| +..-.++-.|+++-.... ..+. ..|-.. .|++++.. ..| .++-.|+|+++-+
T Consensus        80 IKEGs~Y~i~i~F~V~~eivsGLkY~q~vkr~Gi~Vdk~~~-mlGs-y~P~~e-~y~~~~p~eeaPsG~laRG~Y~a~s~  156 (179)
T d1ds6b_          80 LKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATF-MVGS-YGPRPE-EYEFLTPVEEAPKGMLARGTYHNKSF  156 (179)
T ss_dssp             EETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEE-EEEE-ECCCSS-CEEEECCCEECCCSTTTCEEEEEEEE
T ss_pred             ecCCCEEEEEEEEEEecccccCcEEEEEEEECCEEEcceeE-eeec-cCCCCC-ceeEeCCCccCCceeEEeecceEEEE
Confidence            5678889999999999887666 566667778887643322 1111 123222 25443321 122 3344589999999


Q ss_pred             EEeCCCceEEEEEEEEEEEeec
Q 031744          126 MYDATKKQVLTCITFDFSIGFA  147 (153)
Q Consensus       126 l~d~~~~~~i~C~~~~v~i~~~  147 (153)
                      +.|+++.. ..=++..+.|.++
T Consensus       157 F~DDD~~~-~l~~~w~feI~Kd  177 (179)
T d1ds6b_         157 FTDDDKQD-HLSWEWNLSIKKE  177 (179)
T ss_dssp             EECTTCCC-CEEEEEEEEEESS
T ss_pred             EEcCCCcE-EEEEEEEEEEecC
Confidence            99999877 7778888888765

>d1g0da1 b.1.18.9 (A:6-140) Transglutaminase N-terminal domain {Red sea bream (Chrysophrys major) [TaxId: 143350]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Transglutaminase N-terminal domain
domain: Transglutaminase N-terminal domain
species: Red sea bream (Chrysophrys major) [TaxId: 143350]

Probab=91.88  E-value=0.77  Score=30.31  Aligned_cols=82  Identities=12%  Similarity=0.094  Sum_probs=50.9

Q ss_pred             CCCCCceEEEEEEEEeceeecCc-EEEEEEEEce-----EEEcccCcCCCCCCCCCCCCCeeEEEEEEEeCCCCCCeEEE
Q 031744           48 PVARGREATFSISATTDKAISGG-KLVIDVSYFG-----WHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYS  121 (153)
Q Consensus        48 ~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~-----~~~~~~~~d~C~~~~CPl~~G~~~~~~~~~ip~~~P~g~y~  121 (153)
                      .++||+.++|.+.+  ++..+.. .+.+.+..|-     .++.....+.-+....=...|. ..+.++..|..+|-|+|+
T Consensus        28 IVRRGQ~F~i~l~f--~R~~~~~d~l~l~~~~G~~p~~~~~~~~~~~~~~~w~a~~~~~~~-~v~vsV~spa~A~VG~y~  104 (135)
T d1g0da1          28 IVRRGQPFSITLQC--SDSLPPKHHLELVLHLGKRDEVVIKVQKEHGARDKWWFNQQGAQD-EILLTLHSPANAVIGHYR  104 (135)
T ss_dssp             EEETTSCEEEEEEE--SSCCCTTCEEEEEEEESTTCSEEEEEBSSSCCSSSCEEEEEECSS-EEEEEEECCTTCCCEEEE
T ss_pred             EEECCCeEEEEEEe--cCCCCCCccEEEEEEECCCCcEEcccccccCCCCcceEEEEcCCC-EEEEEEeCCCCCeEEEEE
Confidence            37899999999987  3444433 5677777763     2333222221111101112333 467888899999999999


Q ss_pred             EEEEEEeCCCc
Q 031744          122 LKMKMYDATKK  132 (153)
Q Consensus       122 v~~~l~d~~~~  132 (153)
                      +.++....+|.
T Consensus       105 L~v~~~~~~~~  115 (135)
T d1g0da1         105 LAVLVMSPDGH  115 (135)
T ss_dssp             EEEEEECTTSC
T ss_pred             EEEEEEecCCc
Confidence            99998766554

>d1ix2a_ b.1.18.17 (A:) Copper resistance protein C (CopC, PcoC) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Copper resistance protein C (CopC, PcoC)
domain: Copper resistance protein C (CopC, PcoC)
species: Escherichia coli [TaxId: 562]

Probab=91.08  E-value=0.36  Score=30.11  Aligned_cols=33  Identities=15%  Similarity=0.384  Sum_probs=24.4

Q ss_pred             EeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEE
Q 031744          110 VLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSI  144 (153)
Q Consensus       110 ~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i  144 (153)
                      ...+..++|.|+|.|++...||.. + =-.|.|.|
T Consensus        69 ~~~~~l~~G~Y~V~wrv~s~DGH~-~-~G~~~F~V  101 (102)
T d1ix2a_          69 IPREPLPAGTYRVDWRAVSSDTHP-I-TGNYTFTV  101 (102)
T ss_dssp             EESSCCCSEEEEEEEEECCTTCCC-E-EEEEEEEE
T ss_pred             eccCCCCCceEEEEEEEEcCCCCe-e-ccEEEEEE
Confidence            345567899999999999999986 3 24555544

>d2c9qa1 b.1.18.17 (A:1-102) Copper resistance protein C (CopC, PcoC) {Pseudomonas syringae [TaxId: 317]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Copper resistance protein C (CopC, PcoC)
domain: Copper resistance protein C (CopC, PcoC)
species: Pseudomonas syringae [TaxId: 317]

Probab=89.90  E-value=0.52  Score=29.25  Aligned_cols=35  Identities=11%  Similarity=0.209  Sum_probs=24.7

Q ss_pred             EEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEE
Q 031744          108 SQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSI  144 (153)
Q Consensus       108 ~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i  144 (153)
                      ....+...++|.|+|.|++...||.. + =-.+.|.+
T Consensus        67 ~~~~~~~l~~G~Y~V~wrvvs~DGH~-~-~G~~~FtV  101 (102)
T d2c9qa1          67 VITPASPLTAGTYKVDWRAVSSDTHP-I-TGSVTFKV  101 (102)
T ss_dssp             EEEESSCCCSEEEEEEEEECCTTCCC-E-EEEEEEEE
T ss_pred             EEecCCCCCCceEEEEEEEEecCCCe-e-ccEEEEEE
Confidence            33455668899999999999999976 2 24444443

>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Bordetella pertussis [TaxId: 520]

Probab=86.83  E-value=2.6  Score=27.23  Aligned_cols=51  Identities=20%  Similarity=0.305  Sum_probs=37.2

Q ss_pred             CCC-CCCCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEeecc
Q 031744           95 SCP-VSTGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFAS  148 (153)
Q Consensus        95 ~CP-l~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~~~  148 (153)
                      ..| |.+|+ |.|+-...+.  .|.|.....+++.+++|+. +-.---.|.+..++
T Consensus        70 ~qPvl~PGe~f~Y~S~~~l~--tp~G~M~G~y~m~~~~g~~-f~v~Ip~F~L~~P~  122 (123)
T d1xq4a_          70 QQPLLAPGETFEYTSGCPLP--TPIGTMRGTYHCVGENGIP-FEVPIAEFLLAMPR  122 (123)
T ss_dssp             CCCEECTTCEEEEEEEEEES--SSEEEEEEEEEEEETTSCE-EEEEEEEEEEECTT
T ss_pred             CcccCCCCCCEEEeCCCCcC--CCCeEEEEEEEEEECCCCE-EEEECCCeEcCCCC
Confidence            788 69997 6777766666  4789999999999988887 55555555555443

>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Shewanella oneidensis [TaxId: 70863]

Probab=85.31  E-value=2.9  Score=27.35  Aligned_cols=52  Identities=17%  Similarity=0.247  Sum_probs=39.1

Q ss_pred             CCCC-CCCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEeeccc
Q 031744           95 SCPV-STGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFASS  149 (153)
Q Consensus        95 ~CPl-~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~~~~  149 (153)
                      ..|+ .+|+ |+|+-...+.  .|.|.....+.+.+++|+. +-..--+|.+..++.
T Consensus        69 ~qPvl~PGe~f~Y~S~~~l~--t~~G~M~G~y~m~~~~g~~-F~v~Ip~F~L~~P~~  122 (132)
T d1tzaa_          69 ETPTIPPNTAYQYTSGTVLD--TPFGIMYGTYGMVSESGEH-FNAIIKPFRLATPGL  122 (132)
T ss_dssp             BCCEECTTEEEEEEEEEEES--SSEEEEEEEEEEEETTCCE-EEEEEEEEEEECTTS
T ss_pred             CcCccCCCCCEEEeCCCCcc--CCceEEEEEEEEEECCCCE-EEEECCCEECCCCch
Confidence            5776 7897 6777776665  5789999999999999887 766666666665543

>d1vjja1 b.1.18.9 (A:1-140) Transglutaminase N-terminal domain {Human (Homo sapiens), TGase E3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Transglutaminase N-terminal domain
domain: Transglutaminase N-terminal domain
species: Human (Homo sapiens), TGase E3 [TaxId: 9606]

Probab=84.60  E-value=3.8  Score=26.90  Aligned_cols=81  Identities=14%  Similarity=0.192  Sum_probs=50.0

Q ss_pred             CCCCCceEEEEEEEEeceeecCc-EEEEEEEEce-----------EEEcccCcCCCCCCCCCCCCCe-eEEEEEEEeCCC
Q 031744           48 PVARGREATFSISATTDKAISGG-KLVIDVSYFG-----------WHIHSETHDLCDETSCPVSTGD-FVVAHSQVLPGF  114 (153)
Q Consensus        48 ~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~-----------~~~~~~~~d~C~~~~CPl~~G~-~~~~~~~~ip~~  114 (153)
                      .++||+.+.|.+.+  ++..+.. .+.+.+..|.           +|+... .+.|=..  =+..-+ -+.+.++..|..
T Consensus        30 IVRRGQ~F~i~l~f--~R~~~~~d~l~l~~~~Gp~P~~~~gT~~~~p~~~~-~~~~W~a--~~~~~~~~~v~v~V~spa~  104 (140)
T d1vjja1          30 ILRRGQNFQVLMIM--NKGLGSNERLEFIVSTGPYPSESAMTKAVFPLSNG-SSGGWSA--VLQASNGNTLTISISSPAS  104 (140)
T ss_dssp             EEETTSCEEEEEEE--SSCCCTTCEEEEEEECSSSCCTTTTSEEEEEEESS-CCSSSEE--EEEEEETTEEEEEEECCTT
T ss_pred             EEeCCCcEEEEEEe--CCCCCCCceEEEEEEeCCCCCcCCCeEEEEecCCC-CCCCCEE--EEEecCCCEEEEEEeCCCC
Confidence            37899999999987  4444444 5667766662           233221 1222110  000101 257788899999


Q ss_pred             CCCeEEEEEEEEEeCCCce
Q 031744          115 TPPGTYSLKMKMYDATKKQ  133 (153)
Q Consensus       115 ~P~g~y~v~~~l~d~~~~~  133 (153)
                      .|-|.|.+.++...+++..
T Consensus       105 A~VG~y~L~v~~~s~~~~~  123 (140)
T d1vjja1         105 APIGRYTMALQIFSQGGIS  123 (140)
T ss_dssp             CCCEEEEEEEEEEETTEEE
T ss_pred             CceEEEEEEEEEEeCCcce
Confidence            9999999999988765543