Citrus Sinensis ID: 031772

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
MLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNRHGGA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccccccccEEEEEEcccccHHccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mlvwdhgstlqacrcplcrrritllipnddslrqrhdpavgDILQKVEsynrifggpttanglfQRIQDLPFLLRRLVRELvdphrslplVIRARVYIAMIFSAVyifspidiiPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNRHGGA
Flexible Loop (DISEMBL)
mlvwdhgstlqacrcplcRRRITLlipnddslrqrhDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELvdphrslplvIRARVYIAMIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNRHGGA
Low Complexity Region (SEG)
MLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEallgivgllddlliallCFLHVAALYRAVLYNRHGGA
Disordered region (IsUnstruct)
**VWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYN*****
Disordered Region (DISOPRED)
MLVWDHGSTLQACRCPLCRRRITLLIPN***************LQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNR****
Disordered Region (DISEMBL)
MLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNRHGGA
Disordered Region (DISPRO)
MLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNRH***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNRHGGA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	153	2.2.26 [Sep-21-2011]
F1MK05	259	E3 ubiquitin-protein liga	yes	no	0.921	0.544	0.369	2e-20
Q28DS3	257	E3 ubiquitin-protein liga	yes	no	0.915	0.544	0.363	1e-19
Q8CBG9	286	E3 ubiquitin-protein liga	yes	no	0.921	0.493	0.369	3e-19
Q96K19	258	E3 ubiquitin-protein liga	yes	no	0.921	0.546	0.363	3e-19
Q7SZN2	266	E3 ubiquitin-protein liga	yes	no	0.954	0.548	0.344	1e-18
Q5PPX5	257	E3 ubiquitin-protein liga	N/A	no	0.915	0.544	0.390	5e-15

>sp|F1MK05|RN170_BOVIN E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3 SV=2

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 81/146 (55%), Gaps = 5/146 (3%)

Query: 4   WDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGL 63
           W +GS L A  CP+CR+ +TLL+P      Q  D  V  + Q +  YNR F G      +
Sbjct: 116 WRYGSWLGAISCPICRQTVTLLLPVFGENDQSQD--VVSLHQDISDYNRRFSG--QPRSI 171

Query: 64  FQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVG 123
            +RI DLP LLR   RE+      L  + R R+ + ++ +  Y+ SP+D +PEAL GI+G
Sbjct: 172 MERIMDLPTLLRHAFREMFSVG-GLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILG 230

Query: 124 LLDDLLIALLCFLHVAALYRAVLYNR 149
            LDD  +  L  ++++ +YR V+  R
Sbjct: 231 FLDDFFVIFLLLIYISIMYREVITQR 256

E3 ubiquitin-protein ligase. Plays an essential role in stimulus-induced inositol 1,4,5-trisphosphate receptor type 1 (ITPR1) ubiquitination and degradation via the endoplasmic reticulum-associated degradation (ERAD) pathway. Also involved in ITPR1 turnover in resting cells.
Bos taurus (taxid: 9913)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q28DS3|RN170_XENTR E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis GN=rnf170 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 6/146 (4%)

Query: 4   WDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGL 63
           W +GS L A  CP+CR+ +TL+ P   +  Q       +IL++   YNR F G      L
Sbjct: 115 WRYGSWLGAINCPICRQTVTLIFPLFQATEQEDS---QNILREAIGYNRRFSG--QPRSL 169

Query: 64  FQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVG 123
             RI DLP LLR   RE+      L  + R R+ + ++ +  Y+ SP+DIIPEA+ G++G
Sbjct: 170 MDRIMDLPTLLRHAFREMFSVG-GLFWMFRIRIVLCLLGALFYLVSPLDIIPEAVFGLLG 228

Query: 124 LLDDLLIALLCFLHVAALYRAVLYNR 149
            LDD  +  L  ++++ +YR V+  R
Sbjct: 229 FLDDFFVLFLLLIYISIMYREVVTQR 254

Xenopus tropicalis (taxid: 8364)

>sp|Q8CBG9|RN170_MOUSE E3 ubiquitin-protein ligase RNF170 OS=Mus musculus GN=Rnf170 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 80/146 (54%), Gaps = 5/146 (3%)

Query: 4   WDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGL 63
           W +GS L A  CP+CR+ +TLL+       Q  D  V  + Q V  YNR F G      +
Sbjct: 143 WRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQD--VIRLRQDVNDYNRRFSG--QPRSI 198

Query: 64  FQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVG 123
            +RI DLP LLR   RE+      L  + R R+ + ++ +  Y+ SP+D +PEAL GI+G
Sbjct: 199 MERIMDLPTLLRHAFREVFSVG-GLFWMFRIRIMLCLMGAFFYLISPLDFVPEALFGILG 257

Query: 124 LLDDLLIALLCFLHVAALYRAVLYNR 149
            LDD  +  L  ++++ +YR V+  R
Sbjct: 258 FLDDFFVIFLLLIYISIMYREVITQR 283

Mus musculus (taxid: 10090)

>sp|Q96K19|RN170_HUMAN E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1 SV=2

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 5/146 (3%)

Query: 4   WDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGL 63
           W +GS L A  CP+CR+ +TLL+       Q  D  V  + Q +  YNR F G      +
Sbjct: 115 WRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQD--VLRLHQDINDYNRRFSG--QPRSI 170

Query: 64  FQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVG 123
            +RI DLP LLR   RE+      L  + R R+ + ++ +  Y+ SP+D +PEAL GI+G
Sbjct: 171 MERIMDLPTLLRHAFREMFSVG-GLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILG 229

Query: 124 LLDDLLIALLCFLHVAALYRAVLYNR 149
            LDD  +  L  ++++ +YR V+  R
Sbjct: 230 FLDDFFVIFLLLIYISIMYREVITQR 255

Homo sapiens (taxid: 9606)

>sp|Q7SZN2|RN170_DANRE E3 ubiquitin-protein ligase RNF170 OS=Danio rerio GN=rnf170 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 8/154 (5%)

Query: 4   WDHGSTLQACRCPLCRRRITLLIP----NDDSLRQRHDPAVGD-ILQKVESYNRIFGGPT 58
           W +G+ L A  CP+CR+ +TLL P    ++ S      P     IL  +  YNR F G  
Sbjct: 116 WRYGTWLGAISCPICRQMVTLLFPLFQDSEQSAVAADSPVEPTLILTDISDYNRRFSG-- 173

Query: 59  TANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEAL 118
               L  R++D+P LLR   RE+      L  + R R+ + +  +  Y+ SP+D +PE +
Sbjct: 174 QPRSLLDRLRDVPTLLRHAFREMFSVG-GLFWMFRVRILLCVCGALAYLVSPLDFLPEGV 232

Query: 119 LGIVGLLDDLLIALLCFLHVAALYRAVLYNRHGG 152
           LG++G LDD  + LL F++++ +YR V+  R  G
Sbjct: 233 LGLLGFLDDFFVILLLFIYISIMYREVVTQRLAG 266

Danio rerio (taxid: 7955)

>sp|Q5PPX5|RN170_XENLA E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 83/146 (56%), Gaps = 6/146 (4%)

Query: 4   WDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGL 63
           W +G+ L A  CP+CR+ +TLL P   +  Q       +ILQ+   YNR F G      L
Sbjct: 115 WRYGTWLGAINCPICRQTVTLLFPLFGATDQED---AQNILQEATGYNRRFSG--QPRSL 169

Query: 64  FQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVG 123
             RI DLP LLR   RE+      L  + R R+ + ++ + +Y+ SP+DIIPEAL GI+G
Sbjct: 170 MDRIMDLPTLLRHAFREMFSVG-GLFWMFRIRIVLCLLGALLYLVSPLDIIPEALFGILG 228

Query: 124 LLDDLLIALLCFLHVAALYRAVLYNR 149
            LDDL +  L  ++++ +YR V+  R
Sbjct: 229 FLDDLFVLFLLLIYISIMYREVVTQR 254

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
351727639	186	uncharacterized protein LOC100306204 [Gl	0.980	0.806	0.668	8e-54
224135683	185	predicted protein [Populus trichocarpa]	0.986	0.816	0.705	6e-49
224146326	185	predicted protein [Populus trichocarpa]	0.986	0.816	0.705	6e-49
18410010	185	C3HC4-type RING finger protein [Arabidop	0.986	0.816	0.705	5e-48
388493190	188	unknown [Lotus japonicus]	0.986	0.803	0.662	2e-47
449441207	185	PREDICTED: E3 ubiquitin-protein ligase R	0.986	0.816	0.660	9e-47
334182767	203	C3HC4-type RING finger protein [Arabidop	0.986	0.743	0.692	3e-43
21554064	185	unknown [Arabidopsis thaliana]	0.986	0.816	0.692	1e-42
18395127	185	C3HC4-type RING finger protein [Arabidop	0.986	0.816	0.692	1e-42
357455561	192	RING finger protein [Medicago truncatula	0.960	0.765	0.588	2e-42

>gi|351727639|ref|NP_001235376.1| uncharacterized protein LOC100306204 [Glycine max] gi|255627857|gb|ACU14273.1| unknown [Glycine max]

 Score =  214 bits (545), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 103/154 (66%), Positives = 127/154 (82%), Gaps = 4/154 (2%)

Query: 1   MLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGG-PTT 59
           MLVW HGS   +C+CPLCRR I+LL+P ++SLRQ+ DP V  IL K+ +YNR FGG PTT
Sbjct: 36  MLVWQHGSVGCSCKCPLCRRAISLLVPTEESLRQQQDPEVSQILSKIHAYNRFFGGQPTT 95

Query: 60  ANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALL 119
              L+QR++DLPFLL RL+RE + PHRSLPL+IRARV++ MI S +Y+FSPIDIIPE +L
Sbjct: 96  ---LYQRLRDLPFLLHRLLREFLHPHRSLPLLIRARVFVVMIASVIYLFSPIDIIPEGIL 152

Query: 120 GIVGLLDDLLIALLCFLHVAALYRAVLYNRHGGA 153
           G+VG LDDLLI L+CFLHVAALYR+VLY RHGG+
Sbjct: 153 GVVGFLDDLLIVLICFLHVAALYRSVLYLRHGGS 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135683|ref|XP_002327279.1| predicted protein [Populus trichocarpa] gi|222835649|gb|EEE74084.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (504), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 108/153 (70%), Positives = 133/153 (86%), Gaps = 2/153 (1%)

Query: 1   MLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTA 60
           MLVW HGS LQ C+CPLCRR+ITLL+P + SLR+R+DP V ++L K+E YN +FGG T++
Sbjct: 35  MLVWHHGSVLQPCKCPLCRRQITLLVPGEASLRERNDPHVAEVLGKIERYNHLFGGNTSS 94

Query: 61  NGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLG 120
             L QR+QDLPFLLRRL+RE++DP RSLP+VI+ARVYIAM+ SAVYI SP+DIIPE +LG
Sbjct: 95  --LVQRMQDLPFLLRRLLREIMDPQRSLPVVIKARVYIAMVLSAVYIISPVDIIPEGILG 152

Query: 121 IVGLLDDLLIALLCFLHVAALYRAVLYNRHGGA 153
           IVGLLDDLLI L+CFLHVAA+YR+VLY RHGG+
Sbjct: 153 IVGLLDDLLIVLICFLHVAAIYRSVLYYRHGGS 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146326|ref|XP_002325966.1| predicted protein [Populus trichocarpa] gi|222862841|gb|EEF00348.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (503), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 108/153 (70%), Positives = 132/153 (86%), Gaps = 2/153 (1%)

Query: 1   MLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTA 60
           MLVW HGS LQ C+CPLCRR+ITLL+P + SLR+R DP V ++L K+E YN +FGG T+ 
Sbjct: 35  MLVWHHGSVLQPCKCPLCRRQITLLVPGEASLRERSDPDVAEVLGKIERYNHLFGGNTS- 93

Query: 61  NGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLG 120
            GL QR+QDLPFLLRRL+RE++DP RSLPLVIRARVYIA++ SA+Y+ SPIDIIPE +LG
Sbjct: 94  -GLIQRMQDLPFLLRRLLREIMDPQRSLPLVIRARVYIAVVLSAIYVISPIDIIPEGILG 152

Query: 121 IVGLLDDLLIALLCFLHVAALYRAVLYNRHGGA 153
           IVGLLDDLL+ L+CFLHVAA+YRAVL+ RHGG+
Sbjct: 153 IVGLLDDLLVVLICFLHVAAIYRAVLHYRHGGS 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410010|ref|NP_565037.1| C3HC4-type RING finger protein [Arabidopsis thaliana] gi|13878189|gb|AAK44172.1|AF370357_1 unknown protein [Arabidopsis thaliana] gi|16323398|gb|AAL15193.1| unknown protein [Arabidopsis thaliana] gi|21536916|gb|AAM61248.1| unknown [Arabidopsis thaliana] gi|332197164|gb|AEE35285.1| C3HC4-type RING finger protein [Arabidopsis thaliana]

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 108/153 (70%), Positives = 134/153 (87%), Gaps = 2/153 (1%)

Query: 1   MLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTA 60
           MLVW HGSTLQ C+CPLCRR I+LL+P++D++R R+D  V ++L  +E+YNR+FGG +++
Sbjct: 35  MLVWRHGSTLQPCKCPLCRRHISLLVPSEDTIRDRNDATVKEVLGNLETYNRLFGGRSSS 94

Query: 61  NGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLG 120
             L QR+QDLPFLLRRL+RE++DP R+LPLVIRARVYIAMI SAVYI SPIDIIPE +LG
Sbjct: 95  --LVQRMQDLPFLLRRLLREMMDPQRTLPLVIRARVYIAMILSAVYIISPIDIIPEGVLG 152

Query: 121 IVGLLDDLLIALLCFLHVAALYRAVLYNRHGGA 153
           +VGLLDDLLIAL+CFLHVAALYR+VLY RH G+
Sbjct: 153 VVGLLDDLLIALICFLHVAALYRSVLYFRHAGS 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493190|gb|AFK34661.1| unknown [Lotus japonicus]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/154 (66%), Positives = 124/154 (80%), Gaps = 3/154 (1%)

Query: 1   MLVWDHGSTLQACRCPLCRRRITLLIPND-DSLRQRHDPAVGDILQKVESYNRIFGGPTT 59
           MLVW+HGS +Q C+CPLCRR ITLL+P + DS   R +P V  +L ++++YNR FG    
Sbjct: 37  MLVWNHGSAIQPCKCPLCRRPITLLVPTEQDSASHRQEPEVAHVLSQIQTYNRFFGA--R 94

Query: 60  ANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALL 119
           ++G  QR+ DLPFLLRRL RE +DP RSLPLVIRARVYIAMI SA+Y+FSPIDIIPE + 
Sbjct: 95  SSGPLQRMLDLPFLLRRLAREFLDPQRSLPLVIRARVYIAMIISAIYVFSPIDIIPEGIW 154

Query: 120 GIVGLLDDLLIALLCFLHVAALYRAVLYNRHGGA 153
           G+VGLLDDLLI L+ FLHVAALYR+VLY RHGG+
Sbjct: 155 GVVGLLDDLLIMLIFFLHVAALYRSVLYRRHGGS 188

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441207|ref|XP_004138374.1| PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis sativus]

 Score =  191 bits (485), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 101/153 (66%), Positives = 123/153 (80%), Gaps = 2/153 (1%)

Query: 1   MLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTA 60
           MLVWDHGS L  C+CPLCRR ITLL+P++ S  Q+ DP V  +L  + +YNR FGG +T 
Sbjct: 35  MLVWDHGSPLHPCKCPLCRRSITLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNST- 93

Query: 61  NGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLG 120
             L QR+QDLPFLLRRL+REL +P RSLPLVIR RVYIAM+ S +Y  SPIDIIPEALLG
Sbjct: 94  -DLSQRLQDLPFLLRRLLRELHNPQRSLPLVIRTRVYIAMVLSVIYTVSPIDIIPEALLG 152

Query: 121 IVGLLDDLLIALLCFLHVAALYRAVLYNRHGGA 153
           + GL+DD+LI L+CFL++AA+YR+VLYNRHGG 
Sbjct: 153 LFGLMDDILILLICFLYIAAMYRSVLYNRHGGT 185

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182767|ref|NP_001185064.1| C3HC4-type RING finger protein [Arabidopsis thaliana] gi|332192129|gb|AEE30250.1| C3HC4-type RING finger protein [Arabidopsis thaliana]

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 106/153 (69%), Positives = 136/153 (88%), Gaps = 2/153 (1%)

Query: 1   MLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTA 60
           MLVW HGSTL+ C+CPLCRR I+LL+P+++++R R+D  V ++L  VE+YNR+FGG ++ 
Sbjct: 53  MLVWRHGSTLRPCKCPLCRRPISLLVPSEETVRSRNDATVSEVLHDVETYNRVFGGQSS- 111

Query: 61  NGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLG 120
            GL QR+QDLPFLLRRL+RE++DP R+LPLVIRARVYIA+I SA+YI SPIDIIPE +LG
Sbjct: 112 -GLIQRMQDLPFLLRRLLREMMDPQRTLPLVIRARVYIALILSAIYIISPIDIIPEGVLG 170

Query: 121 IVGLLDDLLIALLCFLHVAALYRAVLYNRHGGA 153
           ++GLLDDLLIAL+CFLHVAALYR+VLY+RHGG+
Sbjct: 171 VIGLLDDLLIALICFLHVAALYRSVLYSRHGGS 203

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554064|gb|AAM63145.1| unknown [Arabidopsis thaliana]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/153 (69%), Positives = 136/153 (88%), Gaps = 2/153 (1%)

Query: 1   MLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTA 60
           MLVW HGSTL+ C+CPLCRR I+LL+P+++++R R+D  V ++L  VE+YNR+FGG   +
Sbjct: 35  MLVWRHGSTLRPCKCPLCRRPISLLVPSEETVRSRNDATVSEVLHDVETYNRVFGG--QS 92

Query: 61  NGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLG 120
           +GL QR+QDLPFLLRRL+RE++DP R+LPLVIRARVYIA+I SA+YI SPIDIIPE +LG
Sbjct: 93  SGLIQRMQDLPFLLRRLLREMMDPQRTLPLVIRARVYIALILSAIYIISPIDIIPEGVLG 152

Query: 121 IVGLLDDLLIALLCFLHVAALYRAVLYNRHGGA 153
           ++GLLDDLLIAL+CFLHVAALYR+VLY+RHGG+
Sbjct: 153 VIGLLDDLLIALICFLHVAALYRSVLYSRHGGS 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395127|ref|NP_564172.1| C3HC4-type RING finger protein [Arabidopsis thaliana] gi|110740529|dbj|BAE98370.1| hypothetical protein [Arabidopsis thaliana] gi|332192128|gb|AEE30249.1| C3HC4-type RING finger protein [Arabidopsis thaliana]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/153 (69%), Positives = 136/153 (88%), Gaps = 2/153 (1%)

Query: 1   MLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTA 60
           MLVW HGSTL+ C+CPLCRR I+LL+P+++++R R+D  V ++L  VE+YNR+FGG   +
Sbjct: 35  MLVWRHGSTLRPCKCPLCRRPISLLVPSEETVRSRNDATVSEVLHDVETYNRVFGG--QS 92

Query: 61  NGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLG 120
           +GL QR+QDLPFLLRRL+RE++DP R+LPLVIRARVYIA+I SA+YI SPIDIIPE +LG
Sbjct: 93  SGLIQRMQDLPFLLRRLLREMMDPQRTLPLVIRARVYIALILSAIYIISPIDIIPEGVLG 152

Query: 121 IVGLLDDLLIALLCFLHVAALYRAVLYNRHGGA 153
           ++GLLDDLLIAL+CFLHVAALYR+VLY+RHGG+
Sbjct: 153 VIGLLDDLLIALICFLHVAALYRSVLYSRHGGS 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455561|ref|XP_003598061.1| RING finger protein [Medicago truncatula] gi|355487109|gb|AES68312.1| RING finger protein [Medicago truncatula]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/153 (58%), Positives = 115/153 (75%), Gaps = 6/153 (3%)

Query: 3   VWDHGSTLQACRCPLCRRRITLLIPND--DSLRQRHDPAVGDILQKVESYNRIFGGPTTA 60
           VW + S LQ C+CPLCRR I LL+P D  D      D      L  ++ YNR+FG  + A
Sbjct: 44  VWQYSSPLQPCKCPLCRRPINLLVPTDVVDDANSEQDRLN---LADIQRYNRVFGQQSNA 100

Query: 61  NGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLG 120
           + + QR++DLPFLL+RL ++ V+P+ SLPLVIRARV+I M+ S +YIFSPIDIIPE +LG
Sbjct: 101 S-IVQRLRDLPFLLKRLFKDFVNPNTSLPLVIRARVFITMLLSIIYIFSPIDIIPEGMLG 159

Query: 121 IVGLLDDLLIALLCFLHVAALYRAVLYNRHGGA 153
           I+GLLDD+LIAL+ FLHVAALYR+VLY RHGG+
Sbjct: 160 IIGLLDDVLIALIFFLHVAALYRSVLYLRHGGS 192

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
TAIR|locus:505006218	185	AT1G72175 [Arabidopsis thalian	0.986	0.816	0.620	2e-47
UNIPROTKB|F1NKI3	287	RNF170 "Uncharacterized protei	0.908	0.484	0.308	1.3e-15
TAIR|locus:2118919	262	AT4G33940 [Arabidopsis thalian	0.888	0.519	0.3	2e-15
UNIPROTKB|F1MK05	259	RNF170 "E3 ubiquitin-protein l	0.921	0.544	0.308	5.4e-15
ZFIN|ZDB-GENE-040426-2572	266	rnf170 "ring finger protein 17	0.954	0.548	0.292	7.9e-14
UNIPROTKB|Q96K19	258	RNF170 "E3 ubiquitin-protein l	0.921	0.546	0.301	1e-13
MGI|MGI:1924983	286	Rnf170 "ring finger protein 17	0.921	0.493	0.308	1e-13
UNIPROTKB|E2RGZ9	639	RNF170 "Uncharacterized protei	0.921	0.220	0.301	3.5e-13
UNIPROTKB|F1NCS0	138	F1NCS0 "Uncharacterized protei	0.333	0.369	0.358	0.00012

TAIR|locus:505006218 AT1G72175 [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 95/153 (62%), Positives = 118/153 (77%)

Query:     1 MLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTA 60
             MLVW HGSTLQ C+CPLCRR I+LL+P++D++R R+D  V ++L  +E+YNR+FGG +++
Sbjct:    35 MLVWRHGSTLQPCKCPLCRRHISLLVPSEDTIRDRNDATVKEVLGNLETYNRLFGGRSSS 94

Query:    61 NGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEXXXX 120
               L QR+QDLPFLLRRL+RE++DP R+LPLVIRARVYIAMI SAVYI SPIDIIPE    
Sbjct:    95 --LVQRMQDLPFLLRRLLREMMDPQRTLPLVIRARVYIAMILSAVYIISPIDIIPEGVLG 152

Query:   121 XXXXXXXXXXXXXCFLHVAALYRAVLYNRHGGA 153
                          CFLHVAALYR+VLY RH G+
Sbjct:   153 VVGLLDDLLIALICFLHVAALYRSVLYFRHAGS 185

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

UNIPROTKB|F1NKI3 RNF170 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 45/146 (30%), Positives = 71/146 (48%)

Query:     4 WDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGL 63
             W +GS L A RCP+CR+ +TL +P    L          +LQ V  YNR F G   +  +
Sbjct:   146 WRYGSWLGAIRCPICRQTVTLFLP----LFSEDQQGATQVLQDVNDYNRRFSGQPRS--I 199

Query:    64 FQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEXXXXXXX 123
              +RI DLP LLR   RE+      L  + R R+++ +  + +Y+ SP+D +PE       
Sbjct:   200 MERIMDLPTLLRHAFREMFSVG-GLFWMFRIRIFLCLFGAFLYLASPLDFLPEALFGILG 258

Query:   124 XXXXXXXXXXCFLHVAALYRAVLYNR 149
                         ++++ +YR V+  R
Sbjct:   259 FLDDFFVIFLLLIYISIMYREVVTQR 284

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2118919 AT4G33940 [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 42/140 (30%), Positives = 71/140 (50%)

Query:     4 WDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGL 63
             W++ +  + C+CP+C R IT L P + SL++R +  V ++L KV  YNR+F G  T  G 
Sbjct:   102 WNYAAISRPCKCPMCVRHITKLSP-EPSLQERQEQEVKEVLDKVRRYNRLFVGGLT--GF 158

Query:    64 FQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEXXXXXXX 123
              Q++ +LPFL++R+V  ++D   +       R++ AM  S +Y  +  + IP        
Sbjct:   159 VQKVHELPFLVKRMVWHMMDTDVNNLYFHEVRIF-AMFMSTLYTAAEFNFIPTGGFRIVT 217

Query:   124 XXXXXXXXXXCFLHVAALYR 143
                         L +  +YR
Sbjct:   218 VFDYAAIAMILILRLVGIYR 237

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

UNIPROTKB|F1MK05 RNF170 "E3 ubiquitin-protein ligase RNF170" [Bos taurus (taxid:9913)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 45/146 (30%), Positives = 71/146 (48%)

Query:     4 WDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGL 63
             W +GS L A  CP+CR+ +TLL+P      Q  D  V  + Q +  YNR F G   +  +
Sbjct:   116 WRYGSWLGAISCPICRQTVTLLLPVFGENDQSQD--VVSLHQDISDYNRRFSGQPRS--I 171

Query:    64 FQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEXXXXXXX 123
              +RI DLP LLR   RE+      L  + R R+ + ++ +  Y+ SP+D +PE       
Sbjct:   172 MERIMDLPTLLRHAFREMFSVG-GLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILG 230

Query:   124 XXXXXXXXXXCFLHVAALYRAVLYNR 149
                         ++++ +YR V+  R
Sbjct:   231 FLDDFFVIFLLLIYISIMYREVITQR 256

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-2572 rnf170 "ring finger protein 170" [Danio rerio (taxid:7955)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 45/154 (29%), Positives = 72/154 (46%)

Query:     4 WDHGSTLQACRCPLCRRRITLLIP----NDDSLRQRHDPAVGD-ILQKVESYNRIFGGPT 58
             W +G+ L A  CP+CR+ +TLL P    ++ S      P     IL  +  YNR F G  
Sbjct:   116 WRYGTWLGAISCPICRQMVTLLFPLFQDSEQSAVAADSPVEPTLILTDISDYNRRFSGQP 175

Query:    59 TANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEXX 118
              +  L  R++D+P LLR   RE+      L  + R R+ + +  +  Y+ SP+D +PE  
Sbjct:   176 RS--LLDRLRDVPTLLRHAFREMFSVG-GLFWMFRVRILLCVCGALAYLVSPLDFLPEGV 232

Query:   119 XXXXXXXXXXXXXXXCFLHVAALYRAVLYNRHGG 152
                             F++++ +YR V+  R  G
Sbjct:   233 LGLLGFLDDFFVILLLFIYISIMYREVVTQRLAG 266

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009790 "embryo development" evidence=IMP

GO:0016874 "ligase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|Q96K19 RNF170 "E3 ubiquitin-protein ligase RNF170" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 44/146 (30%), Positives = 70/146 (47%)

Query:     4 WDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGL 63
             W +GS L A  CP+CR+ +TLL+       Q  D  V  + Q +  YNR F G   +  +
Sbjct:   115 WRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQD--VLRLHQDINDYNRRFSGQPRS--I 170

Query:    64 FQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEXXXXXXX 123
              +RI DLP LLR   RE+      L  + R R+ + ++ +  Y+ SP+D +PE       
Sbjct:   171 MERIMDLPTLLRHAFREMFSVG-GLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILG 229

Query:   124 XXXXXXXXXXCFLHVAALYRAVLYNR 149
                         ++++ +YR V+  R
Sbjct:   230 FLDDFFVIFLLLIYISIMYREVITQR 255

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

MGI|MGI:1924983 Rnf170 "ring finger protein 170" [Mus musculus (taxid:10090)]

 Score = 179 (68.1 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 45/146 (30%), Positives = 70/146 (47%)

Query:     4 WDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGL 63
             W +GS L A  CP+CR+ +TLL+       Q  D  V  + Q V  YNR F G   +  +
Sbjct:   143 WRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQD--VIRLRQDVNDYNRRFSGQPRS--I 198

Query:    64 FQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEXXXXXXX 123
              +RI DLP LLR   RE+      L  + R R+ + ++ +  Y+ SP+D +PE       
Sbjct:   199 MERIMDLPTLLRHAFREVFSVG-GLFWMFRIRIMLCLMGAFFYLISPLDFVPEALFGILG 257

Query:   124 XXXXXXXXXXCFLHVAALYRAVLYNR 149
                         ++++ +YR V+  R
Sbjct:   258 FLDDFFVIFLLLIYISIMYREVITQR 283

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E2RGZ9 RNF170 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
 Identities = 44/146 (30%), Positives = 70/146 (47%)

Query:     4 WDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGL 63
             W +GS L A  CP+CR+ +TLL+       Q  D  V  + Q +  YNR F G   +  +
Sbjct:   497 WRYGSWLGAISCPICRQTVTLLLTVFGENDQSQD--VVSLRQDINDYNRRFSGQPRS--I 552

Query:    64 FQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEXXXXXXX 123
              +RI DLP LLR   RE+      L  + R R+ + ++ +  Y+ SP+D +PE       
Sbjct:   553 MERIMDLPTLLRHAFREMFSVG-GLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILG 611

Query:   124 XXXXXXXXXXCFLHVAALYRAVLYNR 149
                         ++++ +YR V+  R
Sbjct:   612 FLDDFFVIFLLLIYISIMYREVITQR 637

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NCS0 F1NCS0 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 95 (38.5 bits), Expect = 0.00012, P = 0.00012
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query:     4 WDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGG 56
             W H   L A  CPLCR+++ +L  ++ S  + HD     I+  + +YNR F G
Sbjct:    47 WKHSPWLGAIICPLCRQKVVVL--DNISCEKLHDKPSKQIVHDIRAYNRRFSG 97


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.332   0.146   0.463    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      153       136   0.00091  102 3  11 21  0.45    30
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  570 (61 KB)
  Total size of DFA:  133 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.38u 0.14s 13.52t   Elapsed:  00:00:01
  Total cpu time:  13.38u 0.14s 13.52t   Elapsed:  00:00:01
  Start:  Thu May  9 23:21:56 2013   End:  Thu May  9 23:21:57 2013

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	153
pfam06803	40	pfam06803, DUF1232, Protein of unknown function (D	3e-05
COG3339	116	COG3339, COG3339, Uncharacterized conserved protei	5e-04

>gnl|CDD|203520 pfam06803, DUF1232, Protein of unknown function (DUF1232)

 Score = 39.0 bits (92), Expect = 3e-05
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 95  RVYIAMIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLC 134
           +  + ++ + +Y  SPID+IP+  + ++G LDD  +  L 
Sbjct: 2   KAKLLILAALLYFVSPIDLIPD-FIPVLGYLDDAAVLALA 40

This family represents a conserved region of approximately 60 residues within a number of hypothetical bacterial and archaeal proteins of unknown function. Length = 40

>gnl|CDD|225876 COG3339, COG3339, Uncharacterized conserved protein [Function unknown]

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 67  IQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVGLLD 126
            + +PFL   L           P        + ++ +  Y  SPIDIIP+ L  I G +D
Sbjct: 24  KRYIPFLFDLLAAWYAARDPETPK----YAKLIILAALGYFVSPIDIIPDFLPVI-GFID 78

Query: 127 DLLIA 131
           D+ + 
Sbjct: 79  DIAVL 83

Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
COG3339	116	Uncharacterized conserved protein [Function unknow	99.68
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	99.63
PF06803	40	DUF1232: Protein of unknown function (DUF1232); In	99.47
KOG4604	91	consensus Uncharacterized conserved protein [Funct	93.65
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	86.74
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	84.39
TIGR02652	163	conserved hypothetical protein TIGR02652, cyanobac	80.44

>COG3339 Uncharacterized conserved protein [Function unknown]

Probab=99.68  E-value=3.2e-16  Score=114.28  Aligned_cols=87  Identities=23%  Similarity=0.331  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCchhHHHHhhHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCcCCccch
Q 031772           40 VGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALL  119 (153)
Q Consensus        40 ~~~v~~~i~~YNr~fs~~~~~~~~~~~l~~~p~l~~~l~~~~~~~~~~~~~~~~~r~~~~i~~al~Y~isP~D~IPd~i~  119 (153)
                      +....+..++||+.+      +.+..++...-.++.. +....++++      +++.++++.++++|++||+|+|||++ 
T Consensus         6 ~~~~~~~~~~~~~~~------rr~~~~~~~~~~~l~~-~~~~~~~~~------p~~~~l~i~aal~Y~V~PiDiIPD~l-   71 (116)
T COG3339           6 RDREGEVLERFRKKY------RRAKRYIPFLFDLLAA-WYAARDPET------PKYAKLIILAALGYFVSPIDIIPDFL-   71 (116)
T ss_pred             HHHHHHHHHHHHHHH------HHHHHHhhHHHHHHHH-HHHhhcccc------hHHHHHHHHHHHHHHHchhhhchhhh-
Confidence            556667788888877      7777777644444333 333445543      36778899999999999999999986 


Q ss_pred             hhhhhhHHHHHHHHHHHHHHH
Q 031772          120 GIVGLLDDLLIALLCFLHVAA  140 (153)
Q Consensus       120 g~lG~lDD~~v~~~~l~~v~~  140 (153)
                      |++|++||++|+.+++..+++
T Consensus        72 p~iG~iDDi~V~~~~v~~i~~   92 (116)
T COG3339          72 PVIGFIDDIAVLTLAVTAISK   92 (116)
T ss_pred             hccchHHHHHHHHHHHHHHHH
Confidence            889999999999999999888

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=2.6e-16  Score=137.63  Aligned_cols=145  Identities=23%  Similarity=0.402  Sum_probs=123.9

Q ss_pred             CcccccCCCCCCCCCCcccccccc--cccCCCcccccCChHHHHHHHHHH---HHHHHhCCCCCCchhHHHHhhHHHHHH
Q 031772            1 MLVWDHGSTLQACRCPLCRRRITL--LIPNDDSLRQRHDPAVGDILQKVE---SYNRIFGGPTTANGLFQRIQDLPFLLR   75 (153)
Q Consensus         1 ~~yW~~~~~~~~~~CP~CR~~i~~--L~p~~~~~~~~~d~~~~~v~~~i~---~YNr~fs~~~~~~~~~~~l~~~p~l~~   75 (153)
                      +|||++|++.++|+||+||+.|++  |.|+.+... +..+. .+...+-+   .||++|++.++ +..-+.+.++|.+++
T Consensus       214 Lqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~-qkke~-l~~~~~~ng~~~~~r~F~~d~~-r~~p~fl~dl~~~a~  290 (513)
T KOG2164|consen  214 LQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD-QKKEE-LKLHQDPNGIPDYNRRFSGDPA-RFVPDFLMDLPTYAR  290 (513)
T ss_pred             HHHHhhhcccCCccCCchhhhccccceeeeeeccc-cccHH-HHHHhcccCCCccccceecCcc-cccHHHHHhHHHHHH
Confidence            589999999999999999999999  999987743 22233 34444444   89999999985 889999999999999


Q ss_pred             HHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031772           76 RLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNR  149 (153)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~r~~~~i~~al~Y~isP~D~IPd~i~g~lG~lDD~~v~~~~l~~v~~~yr~~~~~r  149 (153)
                      .+++.++... .+.++...++.+..++..+|+..|.+.+|+.+.|.+|++||..+-..++...+.+++++.+.|
T Consensus       291 ~~i~~~~~~~-~l~i~~~~~i~~v~i~~~~~~~~~~~~~~q~~~~~is~lde~~~~~l~ls~~s~~dne~n~s~  363 (513)
T KOG2164|consen  291 INIRNMFNNH-ILTIVDQVCIAAVFICQYLSFLLPRRMVPQAIKGRISFLDECTNDQLILSEMSRIDNEYNASR  363 (513)
T ss_pred             HHHHHhhccc-ceeehhhHhHHHHHHHHHhcccchhhhcchhhcCccCchhhhcchhhhhhhhhhhhhhhhhhh
Confidence            9999977653 577777788888999999999999999999999999999999999999999999999776654

>PF06803 DUF1232: Protein of unknown function (DUF1232); InterPro: IPR010652 This family represents a conserved region of approximately 60 residues within a number of hypothetical bacterial and archaeal proteins of unknown function

Probab=99.47  E-value=2.6e-14  Score=86.24  Aligned_cols=39  Identities=28%  Similarity=0.651  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHhhccCCcCCccchhhhhhhHHHHHHHHH
Q 031772           95 RVYIAMIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLC  134 (153)
Q Consensus        95 r~~~~i~~al~Y~isP~D~IPd~i~g~lG~lDD~~v~~~~  134 (153)
                      |.++.++++++|++||+|+|||++ |++|++||++++.++
T Consensus         2 ~~~~~~~~al~Y~isP~D~iPD~~-p~~G~lDD~~v~~~v   40 (40)
T PF06803_consen    2 KAKLLILAALAYFISPIDLIPDFI-PVIGYLDDAAVLAFV   40 (40)
T ss_pred             hHHHHHHHHHHHHhchhhhCCCcc-ccccHHHHHHHHHhC
Confidence            556789999999999999999975 999999999998763

>KOG4604 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.65  E-value=0.048  Score=38.23  Aligned_cols=88  Identities=22%  Similarity=0.219  Sum_probs=58.0

Q ss_pred             ccCCCcccccCChHHHHHHHHHHHHHHHhCCCCCCchhHHHHhhHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHH
Q 031772           26 IPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAV  105 (153)
Q Consensus        26 ~p~~~~~~~~~d~~~~~v~~~i~~YNr~fs~~~~~~~~~~~l~~~p~l~~~l~~~~~~~~~~~~~~~~~r~~~~i~~al~  105 (153)
                      .|+.....++.+++..+..-|..-||+.+.+..  ...+.-+-.+|++.++.+=...+.  +..+-... .-.-......
T Consensus         2 ~p~~sa~~~~~~e~~~~~~~d~clad~l~kg~s--g~~ig~v~s~~ffr~~~wpiw~gt--gvglGvay-~~cq~~l~a~   76 (91)
T KOG4604|consen    2 HPSHSAIRSRNSESELGRKWDRCLADSLVKGGS--GLGIGIVVSLLFFRRREWPIWLGT--GVGLGVAY-SNCQARLNAV   76 (91)
T ss_pred             CccccccccCCcHhhhhhhhhHHHHHHHhccCc--ceeeehhhhhhhhcceeeeeecCc--ccccchhh-HHHHHHhccc
Confidence            355545556677788888889999999999987  566666666777766654333322  11111111 1134556778


Q ss_pred             HhhccCCcCCccc
Q 031772          106 YIFSPIDIIPEAL  118 (153)
Q Consensus       106 Y~isP~D~IPd~i  118 (153)
                      |+++|+|++|+..
T Consensus        77 y~i~~~~~~~~~~   89 (91)
T KOG4604|consen   77 YIIHGIDIIPEGV   89 (91)
T ss_pred             eeecCCCCCcccc
Confidence            9999999999975

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=86.74  E-value=0.3  Score=29.81  Aligned_cols=14  Identities=36%  Similarity=0.987  Sum_probs=10.9

Q ss_pred             CCCCCCcccccccc
Q 031772           11 QACRCPLCRRRITL   24 (153)
Q Consensus        11 ~~~~CP~CR~~i~~   24 (153)
                      +.-+||+||++|+.
T Consensus        36 ~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen   36 RKKKCPICRQPIES   49 (50)
T ss_dssp             TTSBBTTTTBB-SE
T ss_pred             cCCCCCcCChhhcC
Confidence            56799999999873

...

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.39  E-value=0.37  Score=30.57  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=12.7

Q ss_pred             cccccCCCCCCCCCCccccccc
Q 031772            2 LVWDHGSTLQACRCPLCRRRIT   23 (153)
Q Consensus         2 ~yW~~~~~~~~~~CP~CR~~i~   23 (153)
                      +-|.++....|-.||.|...+.
T Consensus        14 ~~k~~~~S~~PatCP~C~a~~~   35 (54)
T PF09237_consen   14 KPKSKSQSEQPATCPICGAVIR   35 (54)
T ss_dssp             --CCCCTTS--EE-TTT--EES
T ss_pred             HHHHhhccCCCCCCCcchhhcc
Confidence            4588888889999999997764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial

Probab=80.44  E-value=0.61  Score=35.50  Aligned_cols=13  Identities=46%  Similarity=1.068  Sum_probs=11.3

Q ss_pred             CCCCCcccccccc
Q 031772           12 ACRCPLCRRRITL   24 (153)
Q Consensus        12 ~~~CP~CR~~i~~   24 (153)
                      -+.||.|||+|.-
T Consensus         9 ei~CPhCRQ~ipA   21 (163)
T TIGR02652         9 EIRCPHCRQNIPA   21 (163)
T ss_pred             cCcCchhhcccch
Confidence            4799999999974

Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	153
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 4e-04
 Identities = 29/200 (14%), Positives = 50/200 (25%), Gaps = 72/200 (36%)

Query: 3   VWDHGSTLQA----CRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPT 58
           V +      A    C+         LL      +       +        S +      T
Sbjct: 253 VQN-AKAWNAFNLSCK--------ILLTTRFKQVTD----FLSAATTTHISLDHHSMTLT 299

Query: 59  TAN--GLF-----QRIQDL--------PFLLRRLVRELVD-PHR---------------- 86
                 L       R QDL        P  L  +   + D                    
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 87  --SL----PLVIRARVYIAMIFSAVYIFSPIDI-IPEALLGIV--GLLDDLLIALLCFLH 137
             SL    P   R        F  + +F P    IP  LL ++   ++   ++ ++  LH
Sbjct: 360 ESSLNVLEPAEYRKM------FDRLSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 138 VAAL-------YRAVLYNRH 150
             +L           + + +
Sbjct: 413 KYSLVEKQPKESTISIPSIY 432

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	153
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	90.38
2ea5_A	68	Cell growth regulator with ring finger domain prot	90.29
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	89.69
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	89.18
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	87.83
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	85.29
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	84.64
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	83.54
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	83.18
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	82.09

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=90.38  E-value=0.052  Score=33.93  Aligned_cols=17  Identities=35%  Similarity=0.901  Sum_probs=13.9

Q ss_pred             CCCCcccccccccccCC
Q 031772           13 CRCPLCRRRITLLIPND   29 (153)
Q Consensus        13 ~~CP~CR~~i~~L~p~~   29 (153)
                      -+||+||++|+..++.+
T Consensus        45 ~~CPiCR~~i~~~i~i~   61 (63)
T 2vje_B           45 ASCPICKKEIQLVIKVF   61 (63)
T ss_dssp             CBCTTTCCBCCEEEEEE
T ss_pred             CcCCCcCchhhceEEEe
Confidence            48999999998876654

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.29  E-value=0.097  Score=33.26  Aligned_cols=19  Identities=21%  Similarity=0.579  Sum_probs=15.4

Q ss_pred             CCCCcccccccccccCCCc
Q 031772           13 CRCPLCRRRITLLIPNDDS   31 (153)
Q Consensus        13 ~~CP~CR~~i~~L~p~~~~   31 (153)
                      -+||+||++|+..++.+.+
T Consensus        47 ~~CP~CR~~i~~~~~i~~~   65 (68)
T 2ea5_A           47 QQCPMCRQFVQESFALSGP   65 (68)
T ss_dssp             SSCTTTCCCCCCEECCCSS
T ss_pred             CCCCCCCcchhceEEeecC
Confidence            4799999999988777643

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=89.69  E-value=0.072  Score=33.34  Aligned_cols=17  Identities=29%  Similarity=0.825  Sum_probs=13.7

Q ss_pred             CCCCcccccccccccCC
Q 031772           13 CRCPLCRRRITLLIPND   29 (153)
Q Consensus        13 ~~CP~CR~~i~~L~p~~   29 (153)
                      -+||+||++|+..++.+
T Consensus        46 ~~CPiCR~~i~~~i~i~   62 (64)
T 2vje_A           46 KPCPVCRQPIQMIVLTY   62 (64)
T ss_dssp             CCCTTTCCCCCEEEEEE
T ss_pred             CcCCCcCcchhceEeee
Confidence            47999999998776654

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=89.18  E-value=0.64  Score=31.29  Aligned_cols=43  Identities=26%  Similarity=0.457  Sum_probs=28.9

Q ss_pred             CCCCCCcccccccc--cccCCCcccccCChHHHHHHHHHHHHHHHhCCCC
Q 031772           11 QACRCPLCRRRITL--LIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPT   58 (153)
Q Consensus        11 ~~~~CP~CR~~i~~--L~p~~~~~~~~~d~~~~~v~~~i~~YNr~fs~~~   58 (153)
                      ++.+||+||++++.  +.+.     ..-++.++++.+.++++....+...
T Consensus        57 ~~~~CP~Cr~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~  101 (112)
T 1jm7_A           57 GPSQCPLCKNDITKRSLQES-----TRFSQLVEELLKIICAFQLDTGLEY  101 (112)
T ss_dssp             SSCCCTTTSCCCCTTTCBCC-----CSSSHHHHHHHHHHHHHHHHTCCCC
T ss_pred             CCCCCcCCCCcCCHhhcCcc-----HHHHHHHHHHHHHHHHhccCccccc
Confidence            45789999999874  2221     1335677777888888887776543

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=87.83  E-value=0.21  Score=30.77  Aligned_cols=17  Identities=24%  Similarity=0.638  Sum_probs=13.9

Q ss_pred             CCCCcccccccccccCC
Q 031772           13 CRCPLCRRRITLLIPND   29 (153)
Q Consensus        13 ~~CP~CR~~i~~L~p~~   29 (153)
                      -+||+||++++.+.+..
T Consensus        41 ~~CP~Cr~~~~~~~~~~   57 (68)
T 1chc_A           41 PTCPLCKVPVESVVHTI   57 (68)
T ss_dssp             CSTTTTCCCCCCEECCC
T ss_pred             CcCcCCChhhHhhhhcc
Confidence            48999999999876654

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=85.29  E-value=0.27  Score=30.44  Aligned_cols=16  Identities=38%  Similarity=1.115  Sum_probs=13.3

Q ss_pred             CCCcccccccccccCC
Q 031772           14 RCPLCRRRITLLIPND   29 (153)
Q Consensus        14 ~CP~CR~~i~~L~p~~   29 (153)
                      +||+||++++...|.+
T Consensus        53 ~CP~Cr~~~~~~~~~~   68 (69)
T 2kiz_A           53 KCPICRVDIEAQLPSE   68 (69)
T ss_dssp             BCTTTCSBSCSCCCCC
T ss_pred             CCcCcCccccCcCCCC
Confidence            6999999999877653

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.64  E-value=0.33  Score=30.91  Aligned_cols=17  Identities=29%  Similarity=0.501  Sum_probs=13.6

Q ss_pred             CCCCcccccccccccCC
Q 031772           13 CRCPLCRRRITLLIPND   29 (153)
Q Consensus        13 ~~CP~CR~~i~~L~p~~   29 (153)
                      -+||+||++|+..++.+
T Consensus        57 ~~CP~Cr~~i~~~~~i~   73 (75)
T 2ecg_A           57 DKCPMCYTVITFKQKIF   73 (75)
T ss_dssp             SBCTTTCCBCCCCCBCC
T ss_pred             CCCccCCceecCcEEEe
Confidence            47999999998766554

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=83.54  E-value=0.32  Score=31.02  Aligned_cols=17  Identities=29%  Similarity=0.510  Sum_probs=13.9

Q ss_pred             CCCCcccccccccccCC
Q 031772           13 CRCPLCRRRITLLIPND   29 (153)
Q Consensus        13 ~~CP~CR~~i~~L~p~~   29 (153)
                      -+||+||++|+..++.+
T Consensus        56 ~~CP~Cr~~i~~~~~i~   72 (74)
T 4ic3_A           56 DKCPMCYTVITFKQKIL   72 (74)
T ss_dssp             SBCTTTCCBCSEEEECB
T ss_pred             ccCCCcCcCccCcEEEe
Confidence            58999999998776554

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=83.18  E-value=0.32  Score=28.60  Aligned_cols=13  Identities=38%  Similarity=1.048  Sum_probs=10.3

Q ss_pred             CCCCCcccccccc
Q 031772           12 ACRCPLCRRRITL   24 (153)
Q Consensus        12 ~~~CP~CR~~i~~   24 (153)
                      .-+||+||+++++
T Consensus        43 ~~~CP~Cr~~~~v   55 (55)
T 1iym_A           43 HSTCPLCRLTVVV   55 (55)
T ss_dssp             CCSCSSSCCCSCC
T ss_pred             CCcCcCCCCEeEC
Confidence            4589999998763

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=82.09  E-value=0.47  Score=30.84  Aligned_cols=18  Identities=28%  Similarity=0.606  Sum_probs=14.7

Q ss_pred             CCCcccccccccccCCCc
Q 031772           14 RCPLCRRRITLLIPNDDS   31 (153)
Q Consensus        14 ~CP~CR~~i~~L~p~~~~   31 (153)
                      +||+||++|+..++.+.+
T Consensus        51 ~CP~Cr~~i~~~~~i~~p   68 (79)
T 2yho_A           51 SCPVCRSRVEHVQHVYLP   68 (79)
T ss_dssp             BCTTTCCBCCEEEECBCT
T ss_pred             cCCCCCchhhCeEEEEeC
Confidence            899999999987666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	153
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	90.79
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	88.4
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	84.88
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	83.99
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	81.08
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	80.57

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=90.79  E-value=0.044  Score=33.29  Aligned_cols=17  Identities=24%  Similarity=0.638  Sum_probs=13.3

Q ss_pred             CCCCcccccccccccCC
Q 031772           13 CRCPLCRRRITLLIPND   29 (153)
Q Consensus        13 ~~CP~CR~~i~~L~p~~   29 (153)
                      -+||+||++|+.+....
T Consensus        41 ~~CP~CR~~i~~~~~~~   57 (68)
T d1chca_          41 PTCPLCKVPVESVVHTI   57 (68)
T ss_dssp             CSTTTTCCCCCCEECCC
T ss_pred             CcCCCCCcchHhhcccc
Confidence            37999999998766543

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.40  E-value=0.051  Score=31.40  Aligned_cols=11  Identities=36%  Similarity=0.942  Sum_probs=9.1

Q ss_pred             CCCCccccccc
Q 031772           13 CRCPLCRRRIT   23 (153)
Q Consensus        13 ~~CP~CR~~i~   23 (153)
                      -+||+||++++
T Consensus        40 ~~CP~CR~~~~   50 (52)
T d1ur6b_          40 GLCPACRKPYP   50 (52)
T ss_dssp             CBCTTTCCBCS
T ss_pred             CCCCccCCcCC
Confidence            37999999875

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.88  E-value=0.53  Score=30.25  Aligned_cols=12  Identities=50%  Similarity=1.268  Sum_probs=9.8

Q ss_pred             CCCCCccccccc
Q 031772           12 ACRCPLCRRRIT   23 (153)
Q Consensus        12 ~~~CP~CR~~i~   23 (153)
                      .-+||.||++++
T Consensus        58 ~~~CP~Cr~~~~   69 (103)
T d1jm7a_          58 PSQCPLCKNDIT   69 (103)
T ss_dssp             SCCCTTTSCCCC
T ss_pred             CCcCcCCCCcCC
Confidence            457999999875

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=83.99  E-value=0.13  Score=29.94  Aligned_cols=12  Identities=42%  Similarity=1.085  Sum_probs=9.4

Q ss_pred             CCCCCccccccc
Q 031772           12 ACRCPLCRRRIT   23 (153)
Q Consensus        12 ~~~CP~CR~~i~   23 (153)
                      .-+||+||++|-
T Consensus        43 ~~~CP~CR~~i~   54 (55)
T d1iyma_          43 HSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCSSSCCCSC
T ss_pred             CCcCCCCCCEeE
Confidence            347999999874

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.08  E-value=0.15  Score=26.40  Aligned_cols=13  Identities=31%  Similarity=0.925  Sum_probs=10.7

Q ss_pred             CCCCCCccccccc
Q 031772           11 QACRCPLCRRRIT   23 (153)
Q Consensus        11 ~~~~CP~CR~~i~   23 (153)
                      .|-.||+|-|++.
T Consensus         2 kp~~cpic~qrfk   14 (32)
T d2epqa1           2 KPYSCPVCGLRFK   14 (32)
T ss_dssp             CSSEETTTTEECS
T ss_pred             CCcccchHHHHhh
Confidence            5778999998874

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.57  E-value=0.21  Score=29.22  Aligned_cols=13  Identities=31%  Similarity=0.943  Sum_probs=10.5

Q ss_pred             CCCCCcccccccc
Q 031772           12 ACRCPLCRRRITL   24 (153)
Q Consensus        12 ~~~CP~CR~~i~~   24 (153)
                      .-+||+||+++++
T Consensus        37 ~~~CP~Cr~~~~~   49 (56)
T d1bora_          37 GMQCPICQAPWPL   49 (56)
T ss_dssp             SSSCSSCCSSSSC
T ss_pred             CCcCcCCCCcccC
Confidence            3579999999874