Citrus Sinensis ID: 031775

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
MALVGKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVEHDDANMSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAYVDFMVSITKDVADHITKG
ccccEEEEEEEEEEccHHHHHHHHHcccccccccccccEEEEEEEcccccccccEEEEEEEEcccEEEEEEEEEEEccccEEEEEEEEcccccccEEEEEEEEEEEcccccccEEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHcc
cccEEEEEEEEEEEccHHHHHHHHHcccccccccccccEEEEEEEEcccccccEEEEEEEEccccEEEEEEEEEEcccccEEEEEEEcccHHHHccEEEEEEEEEEcccccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcc
MALVGKIEKQIEIEVPAEKFYHIWkkqsyhvptaspanikavdvhegewhhhgsvklwtysVEGRTETFKekvehddanmSVTLIGlegdvfkhfkswlpvykvspkgdgsagsiATCSIAYEKlnanvpdpvaYVDFMVSITKDVADHITKG
malvgkiekqieievpAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFkekvehddanMSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAYVDFMVSITKDVADHITKG
MALVGKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVEHDDANMSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAYVDFMVSITKDVADHITKG
******IEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVEHDDANMSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAYVDFMVSITKDVA******
****GKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVEHDDANMSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAYVDFMVSITKDVADHITKG
MALVGKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVEHDDANMSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAYVDFMVSITKDVADHITKG
*ALVGKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVEHDDANMSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAYVDFMVSITKDVADHITKG
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALVGKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVEHDDANMSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAYVDFMVSITKDVADHITKG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query153 2.2.26 [Sep-21-2011]
Q9SSK9 335 MLP-like protein 28 OS=Ar no no 0.960 0.438 0.377 4e-24
Q9ZVF3151 MLP-like protein 328 OS=A no no 0.986 1.0 0.346 1e-23
Q9SSK7 316 MLP-like protein 34 OS=Ar no no 0.960 0.465 0.357 1e-22
Q941R6171 MLP-like protein 31 OS=Ar no no 0.960 0.859 0.344 2e-22
Q9SSK5158 MLP-like protein 43 OS=Ar no no 0.967 0.936 0.36 3e-22
Q9ZVF2151 MLP-like protein 329 OS=A no no 0.986 1.0 0.326 1e-21
P85524150 Kirola OS=Actinidia delic N/A no 0.954 0.973 0.353 8e-20
P19825159 Major latex protein 15 OS N/A no 0.967 0.930 0.333 9e-17
Q9C7I7152 MLP-like protein 165 OS=A no no 0.934 0.940 0.335 3e-15
Q06395159 Major latex protein 149 O N/A no 0.967 0.930 0.32 8e-15
>sp|Q9SSK9|MLP28_ARATH MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP28 PE=1 SV=1 Back     alignment and function desciption
 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 2   ALVGKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYS 61
           +LVGK+E  +EI+  A+KF+H++  + +HV  ASP NI+  D+HEG+W   GS+  W Y 
Sbjct: 21  SLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYV 80

Query: 62  VEGRTETFKEKVE--HDDANMSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCS 119
            +G  +  KE++E    D N+ +T   +EGD+ K +KS+L   +V+PK  G  GSI    
Sbjct: 81  HDGEAKVAKERIEAVEPDKNL-ITFRVIEGDLMKEYKSFLLTIQVTPK-PGGPGSIVHWH 138

Query: 120 IAYEKLNANVPDPVAYVDFMVSITKDVADHI 150
           + YEK++  V  P   + F V ++K++ +H+
Sbjct: 139 LEYEKISEEVAHPETLLQFCVEVSKEIDEHL 169
Can bind steroids (in vitro), and may also bind other types of hydrophobic ligands.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZVF3|ML328_ARATH MLP-like protein 328 OS=Arabidopsis thaliana GN=MLP328 PE=1 SV=1 Back     alignment and function description
>sp|Q9SSK7|MLP34_ARATH MLP-like protein 34 OS=Arabidopsis thaliana GN=MLP34 PE=2 SV=1 Back     alignment and function description
>sp|Q941R6|MLP31_ARATH MLP-like protein 31 OS=Arabidopsis thaliana GN=MLP31 PE=1 SV=2 Back     alignment and function description
>sp|Q9SSK5|MLP43_ARATH MLP-like protein 43 OS=Arabidopsis thaliana GN=MLP43 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZVF2|ML329_ARATH MLP-like protein 329 OS=Arabidopsis thaliana GN=MLP329 PE=2 SV=1 Back     alignment and function description
>sp|P85524|KIRO_ACTDE Kirola OS=Actinidia deliciosa PE=1 SV=1 Back     alignment and function description
>sp|P19825|MLP15_PAPSO Major latex protein 15 OS=Papaver somniferum GN=MLP15 PE=2 SV=2 Back     alignment and function description
>sp|Q9C7I7|ML165_ARATH MLP-like protein 165 OS=Arabidopsis thaliana GN=MLP165 PE=2 SV=1 Back     alignment and function description
>sp|Q06395|ML149_PAPSO Major latex protein 149 OS=Papaver somniferum GN=MLP149 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query153
449449054151 PREDICTED: MLP-like protein 328-like [Cu 0.967 0.980 0.519 7e-38
224099501150 predicted protein [Populus trichocarpa] 0.980 1.0 0.490 1e-37
449449060151 PREDICTED: MLP-like protein 328-like [Cu 0.967 0.980 0.506 3e-37
3164115152 major latex-like protein [Rubus idaeus] 0.986 0.993 0.506 5e-37
255570152149 Major latex protein, putative [Ricinus c 0.921 0.946 0.472 3e-36
449519563151 PREDICTED: MLP-like protein 28-like [Cuc 0.967 0.980 0.480 2e-35
449449032151 PREDICTED: MLP-like protein 34-like [Cuc 0.967 0.980 0.473 2e-35
449449062151 PREDICTED: MLP-like protein 328-like [Cu 0.973 0.986 0.477 3e-35
33323059152 major latex protein [Ficus pumila var. a 0.967 0.973 0.526 3e-34
2465015152 ripening-induced protein [Fragaria vesca 0.986 0.993 0.474 3e-34
>gi|449449054|ref|XP_004142280.1| PREDICTED: MLP-like protein 328-like [Cucumis sativus] gi|449481261|ref|XP_004156130.1| PREDICTED: MLP-like protein 328-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 79/152 (51%), Positives = 107/152 (70%), Gaps = 4/152 (2%)

Query: 1   MALVGKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEW--HHHGSVKLW 58
           M+LVGK   ++EI  PAEK+Y I+K Q  HVP  SP  I+ V+VHEG+W  H HGS+K+W
Sbjct: 1   MSLVGKFVSELEINAPAEKYYKIFKDQVSHVPNISPNIIQNVEVHEGDWDTHGHGSIKIW 60

Query: 59  TYSVEGRTETFKEKVEHDDANMSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATC 118
           +Y+V+G+TE FKE+VE DD   +VTLIGLEGDVF+H+K +   Y+V PK  G   S+A  
Sbjct: 61  SYTVDGKTEVFKEQVEFDDEKFAVTLIGLEGDVFEHYKLFKGTYQVVPK--GPEHSLAVL 118

Query: 119 SIAYEKLNANVPDPVAYVDFMVSITKDVADHI 150
           ++ YEKLN   P P  Y+D M ++TKD+  H+
Sbjct: 119 TLEYEKLNDGSPYPYKYLDLMNNLTKDIESHL 150

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224099501|ref|XP_002311508.1| predicted protein [Populus trichocarpa] gi|222851328|gb|EEE88875.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449449060|ref|XP_004142283.1| PREDICTED: MLP-like protein 328-like [Cucumis sativus] gi|449519082|ref|XP_004166564.1| PREDICTED: MLP-like protein 328-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|3164115|emb|CAA11844.1| major latex-like protein [Rubus idaeus] Back     alignment and taxonomy information
>gi|255570152|ref|XP_002526038.1| Major latex protein, putative [Ricinus communis] gi|223534685|gb|EEF36378.1| Major latex protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449519563|ref|XP_004166804.1| PREDICTED: MLP-like protein 28-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449449032|ref|XP_004142269.1| PREDICTED: MLP-like protein 34-like [Cucumis sativus] gi|449467408|ref|XP_004151415.1| PREDICTED: MLP-like protein 28-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449449062|ref|XP_004142284.1| PREDICTED: MLP-like protein 328-like [Cucumis sativus] gi|449449064|ref|XP_004142285.1| PREDICTED: MLP-like protein 328-like [Cucumis sativus] gi|449523487|ref|XP_004168755.1| PREDICTED: MLP-like protein 328-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|33323059|gb|AAQ07269.1| major latex protein [Ficus pumila var. awkeotsang] Back     alignment and taxonomy information
>gi|2465015|emb|CAA04770.1| ripening-induced protein [Fragaria vesca] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query153
TAIR|locus:2143809166 AT5G28010 "AT5G28010" [Arabido 0.967 0.891 0.373 9.4e-27
TAIR|locus:2014000 335 MLP28 "AT1G70830" [Arabidopsis 0.960 0.438 0.377 1.9e-26
TAIR|locus:2006757155 AT1G14930 "AT1G14930" [Arabido 0.986 0.974 0.359 1.9e-26
TAIR|locus:2013930 316 MLP34 "AT1G70850" [Arabidopsis 0.960 0.465 0.357 5.9e-25
TAIR|locus:2006797155 AT1G14940 "AT1G14940" [Arabido 0.986 0.974 0.333 9.7e-25
TAIR|locus:2013950158 MLP43 "AT1G70890" [Arabidopsis 0.967 0.936 0.36 1.2e-24
TAIR|locus:2049577151 MLP328 "MLP-like protein 328" 0.980 0.993 0.348 1.2e-24
TAIR|locus:2013970171 MLP31 "AT1G70840" [Arabidopsis 0.960 0.859 0.344 2e-24
TAIR|locus:2128449151 AT4G23680 "AT4G23680" [Arabido 0.980 0.993 0.361 3.3e-24
TAIR|locus:2006812155 AT1G14950 "AT1G14950" [Arabido 0.980 0.967 0.348 5.3e-24
TAIR|locus:2143809 AT5G28010 "AT5G28010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 56/150 (37%), Positives = 93/150 (62%)

Query:     2 ALVGKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYS 61
             +L+GK+E ++EI+ PA  FYHI+  + +HV  A+P N+++ D+H+GEW   GS+  W Y 
Sbjct:    14 SLLGKLEVEVEIKAPAAIFYHIYAGRPHHVAKATPRNVQSCDLHDGEWGTVGSIVYWNYV 73

Query:    62 VEGRTETFKEKVEHDDANMSVTLIG-LEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSI 120
              EG+ +  KE++E  +    +     +EGDV   +KS+L   +V+PK +G  GS+    I
Sbjct:    74 HEGQAKVAKERIELVEPEKKLIKFRVIEGDVMAEYKSFLITIQVTPK-EGGTGSVVKWHI 132

Query:   121 AYEKLNANVPDPVAYVDFMVSITKDVADHI 150
              YEK++ NVP P   + F   +TK++ +H+
Sbjct:   133 EYEKIDENVPHPENLLPFFAEMTKEIDEHL 162
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0006952 "defense response" evidence=IEA
TAIR|locus:2014000 MLP28 "AT1G70830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006757 AT1G14930 "AT1G14930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013930 MLP34 "AT1G70850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006797 AT1G14940 "AT1G14940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013950 MLP43 "AT1G70890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049577 MLP328 "MLP-like protein 328" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013970 MLP31 "AT1G70840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128449 AT4G23680 "AT4G23680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006812 AT1G14950 "AT1G14950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query153
pfam00407150 pfam00407, Bet_v_1, Pathogenesis-related protein B 6e-51
smart01037151 smart01037, Bet_v_1, Pathogenesis-related protein 3e-48
cd07816148 cd07816, Bet_v1-like, Ligand-binding bet_v_1 domai 6e-28
>gnl|CDD|215904 pfam00407, Bet_v_1, Pathogenesis-related protein Bet v I family Back     alignment and domain information 
 Score =  158 bits (403), Expect = 6e-51
 Identities = 66/151 (43%), Positives = 102/151 (67%), Gaps = 3/151 (1%)

Query: 3   LVGKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSV 62
           LVGK+E ++EI+V A+KFY  +K + + +P A P +I+ V+VHEGEW   GS+K WTY+ 
Sbjct: 1   LVGKLETEVEIKVSADKFYKAFKLEDHLIPKAIPHHIQGVEVHEGEWGTGGSIKKWTYTE 60

Query: 63  EGRTETFKEKVEHDD-ANMSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIA 121
           +G+ +  KE++E DD  N ++T   LEGDV + +KS++   +V PK +G  GSI   +I 
Sbjct: 61  DGKPKVVKERIEADDEKNKTITYSVLEGDVLEDYKSFITTLQVIPKSNG--GSIVKWTIE 118

Query: 122 YEKLNANVPDPVAYVDFMVSITKDVADHITK 152
           YEK+  +VP+P  Y+ F+V +TKD+  H+  
Sbjct: 119 YEKIGDDVPEPEKYLKFVVKLTKDIEAHLLA 149

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalyzing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 150
>gnl|CDD|198105 smart01037, Bet_v_1, Pathogenesis-related protein Bet v I family Back     alignment and domain information
>gnl|CDD|176858 cd07816, Bet_v1-like, Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 153
PF00407151 Bet_v_1: Pathogenesis-related protein Bet v I fami 100.0
cd07816148 Bet_v1-like Ligand-binding bet_v_1 domain of major 100.0
cd07821140 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), 99.74
PF10604139 Polyketide_cyc2: Polyketide cyclase / dehydrase an 99.56
cd08866144 SRPBCC_11 Ligand-binding SRPBCC domain of an uncha 99.55
cd07819140 SRPBCC_2 Ligand-binding SRPBCC domain of an unchar 99.52
cd08865140 SRPBCC_10 Ligand-binding SRPBCC domain of an uncha 99.47
cd07813138 COQ10p_like Coenzyme Q-binding protein COQ10p and 99.42
cd08861142 OtcD1_ARO-CYC_like N-terminal and C-terminal aroma 99.4
cd07812141 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR 99.31
cd08860146 TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom 99.26
cd08862138 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of 99.22
cd07824146 SRPBCC_6 Ligand-binding SRPBCC domain of an unchar 99.22
PRK10724158 hypothetical protein; Provisional 99.2
cd07820137 SRPBCC_3 Ligand-binding SRPBCC domain of an unchar 99.2
cd07822141 SRPBCC_4 Ligand-binding SRPBCC domain of an unchar 99.18
PF03364130 Polyketide_cyc: Polyketide cyclase / dehydrase and 99.17
cd07825144 SRPBCC_7 Ligand-binding SRPBCC domain of an unchar 99.14
cd05018144 CoxG Carbon monoxide dehydrogenase subunit G (CoxG 99.1
cd07814139 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand- 99.08
cd07818150 SRPBCC_1 Ligand-binding SRPBCC domain of an unchar 99.04
cd07817139 SRPBCC_8 Ligand-binding SRPBCC domain of an unchar 99.03
cd07823146 SRPBCC_5 Ligand-binding SRPBCC domain of an unchar 98.88
COG3427146 Carbon monoxide dehydrogenase subunit G, CoxG [Ene 98.47
COG5637217 Predicted integral membrane protein [Function unkn 98.45
cd08893136 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi 98.36
COG2867146 Oligoketide cyclase/lipid transport protein [Lipid 98.29
cd08898145 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan 98.26
cd08900143 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan 98.26
PF06240140 COXG: Carbon monoxide dehydrogenase subunit G (Cox 98.26
cd08899157 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan 98.24
cd08897133 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan 98.19
cd08894139 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan 98.14
cd08895146 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan 98.11
cd08876195 START_1 Uncharacterized subgroup of the steroidoge 98.06
cd07826142 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan 97.96
cd08896146 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan 97.9
cd08891149 SRPBCC_CalC Ligand-binding SRPBCC domain of Microm 97.53
COG3832149 Uncharacterized conserved protein [Function unknow 97.46
PF08327124 AHSA1: Activator of Hsp90 ATPase homolog 1-like pr 97.42
cd08901136 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan 97.37
cd08892126 SRPBCC_Aha1 Putative hydrophobic ligand-binding SR 97.16
cd08873235 START_STARD14_15-like Lipid-binding START domain o 97.12
PTZ00220132 Activator of HSP-90 ATPase; Provisional 96.52
PF08982149 DUF1857: Domain of unknown function (DUF1857); Int 96.37
cd08874205 START_STARD9-like C-terminal START domain of mamma 96.14
cd08863141 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand- 95.99
cd08913240 START_STARD14-like Lipid-binding START domain of m 95.5
cd08914236 START_STARD15-like Lipid-binding START domain of m 93.36
cd00177193 START Lipid-binding START domain of mammalian STAR 93.0
cd08905209 START_STARD1-like Cholesterol-binding START domain 92.9
cd08868208 START_STARD1_3_like Cholesterol-binding START doma 92.61
cd08911207 START_STARD7-like Lipid-binding START domain of ma 89.12
cd08877215 START_2 Uncharacterized subgroup of the steroidoge 88.4
cd08906209 START_STARD3-like Cholesterol-binding START domain 88.27
cd08903208 START_STARD5-like Lipid-binding START domain of ma 87.88
cd08869197 START_RhoGAP C-terminal lipid-binding START domain 87.65
PF11485136 DUF3211: Protein of unknown function (DUF3211); In 87.65
COG4276153 Uncharacterized conserved protein [Function unknow 85.81
cd08870209 START_STARD2_7-like Lipid-binding START domain of 84.23
PF10698159 DUF2505: Protein of unknown function (DUF2505); In 83.61
KOG3177227 consensus Oligoketide cyclase/lipid transport prot 82.24
cd08871222 START_STARD10-like Lipid-binding START domain of m 82.0
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms Back     alignment and domain information 
Probab=100.00  E-value=5.4e-49  Score=294.59  Aligned_cols=150  Identities=37%  Similarity=0.626  Sum_probs=141.5

Q ss_pred             CCcceEEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCC
Q 031775            1 MALVGKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDAN   79 (153)
Q Consensus         1 M~~~~k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~   79 (153)
                      |. .++++.|+++++||+|+|++|++.++++||++|++|+|||++|||||..||||+|+|.++++.+++|||++ +|++|
T Consensus         1 m~-~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~   79 (151)
T PF00407_consen    1 MG-VGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEEN   79 (151)
T ss_dssp             SC-EEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTT
T ss_pred             CC-cEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCC
Confidence            66 79999999999999999999998889999999999999999999964445999999999999999999999 99999


Q ss_pred             cEEEEEEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCChhhHHHHHHHHHHHHHhhhhcC
Q 031775           80 MSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAYVDFMVSITKDVADHITKG  153 (153)
Q Consensus        80 ~~~~y~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p~~~~~~~~~~~k~ve~yll~~  153 (153)
                      ++++|++||||++..|++|..++++.|+++||  |+++|+++||+++++.|+|+.+++++..++|+||+|||+|
T Consensus        80 ~~~~y~viEGd~l~~~~~~~~~~~~~~~~~g~--~v~k~t~~Ye~~~~~~~~p~~~~~~~~~~~K~ieayLlan  151 (151)
T PF00407_consen   80 KTITYTVIEGDVLGDYKSFKSTIQKIPKGDGG--CVVKWTIEYEKKGEDVPPPEKYLDFAVGMFKAIEAYLLAN  151 (151)
T ss_dssp             TEEEEEEEEETTGTTTEEEEEEEEEEEETTSC--EEEEEEEEEEESSTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cEEEEEEEeccccccEEEEEEEEEecCCCCCc--eEEEEEEEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999997  9999999999999999999999999999999999999997

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins Back     alignment and domain information
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins Back     alignment and domain information
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis Back     alignment and domain information
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins Back     alignment and domain information
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains Back     alignment and domain information
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily Back     alignment and domain information
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains Back     alignment and domain information
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu Back     alignment and domain information
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>PRK10724 hypothetical protein; Provisional Back     alignment and domain information
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp Back     alignment and domain information
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) Back     alignment and domain information
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins Back     alignment and domain information
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion] Back     alignment and domain information
>COG5637 Predicted integral membrane protein [Function unknown] Back     alignment and domain information
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain Back     alignment and domain information
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism] Back     alignment and domain information
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster Back     alignment and domain information
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins Back     alignment and domain information
>COG3832 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT) Back     alignment and domain information
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins Back     alignment and domain information
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins Back     alignment and domain information
>PTZ00220 Activator of HSP-90 ATPase; Provisional Back     alignment and domain information
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function Back     alignment and domain information
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding Back     alignment and domain information
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily Back     alignment and domain information
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins Back     alignment and domain information
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins Back     alignment and domain information
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins Back     alignment and domain information
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins Back     alignment and domain information
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins Back     alignment and domain information
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins Back     alignment and domain information
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function Back     alignment and domain information
>COG4276 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria Back     alignment and domain information
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism] Back     alignment and domain information
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query153
2i9y_A166 Solution Structure Of Arabidopsis Thaliana Protein 3e-25
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein At1g70830, A Member Of The Major Latex Protein Family Length = 166 Back     alignment and structure 
Iteration: 1

 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)
Query: 2   ALVGKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYS 61
           +LVGK+E  +EI+  A+KF+H++  + +HV  ASP NI+  D+HEG+W   GS+  W Y 
Sbjct: 14  SLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYV 73
Query: 62  VEGRTETFKEKVE--HDDANMSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCS 119
            +G  +  KE++E    D N+ +T   +EGD+ K +KS+L   +V+PK  G  GSI    
Sbjct: 74  HDGEAKVAKERIEAVEPDKNL-ITFRVIEGDLMKEYKSFLLTIQVTPK-PGGPGSIVHWH 131
Query: 120 IAYEKLNANVPDPVAYVDFMVSITKDVADHI 150
           + YEK++  V  P   + F V ++K++ +H+
Sbjct: 132 LEYEKISEEVAHPETLLQFCVEVSKEIDEHL 162

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query153
2i9y_A166 Major latex protein-like protein 28 or MLP-like pr 1e-40
1vjh_A122 BET V I allergen family; structural genomics, cent 2e-27
2flh_A155 Cytokinin-specific binding protein; zeatin, pathog 2e-24
2vq5_A201 S-norcoclaurine synthase; lyase, S- norcoclaurine 3e-21
1e09_A159 PRU AV 1; allergen, major cherry allergen, pathoge 1e-20
3rws_A168 MTN13 protein; zeatin, cytokinin, hormone, lucerne 5e-19
4a8u_A159 Major pollen allergen BET V 1-J; PR-10 protein; 1. 7e-19
1tw0_A157 Pathogenesis-related class 10 protein SPE-16; seve 8e-18
2vjg_A154 Major allergen DAU C 1; major carrot allergen, pat 4e-17
1icx_A155 Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, 7e-17
2qim_A158 PR10.2B; trans-zeatin, cytokinin, plant hormones, 3e-16
3ie5_A165 Phenolic oxidative coupling protein HYP-1; hyperic 1e-14
3qrz_A223 Abscisic acid receptor PYL5; crystal, hormone rece 4e-08
2d4r_A147 Hypothetical protein TTHA0849; start domain, struc 2e-06
>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 166 Back     alignment and structure
 Score =  132 bits (334), Expect = 1e-40
 Identities = 55/152 (36%), Positives = 91/152 (59%), Gaps = 2/152 (1%)

Query: 2   ALVGKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYS 61
           +LVGK+E  +EI+  A+KF+H++  + +HV  ASP NI+  D+HEG+W   GS+  W Y 
Sbjct: 14  SLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYV 73

Query: 62  VEGRTETFKEKVE-HDDANMSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSI 120
            +G  +  KE++E  +     +T   +EGD+ K +KS+L   +V+PK  G  GSI    +
Sbjct: 74  HDGEAKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGP-GSIVHWHL 132

Query: 121 AYEKLNANVPDPVAYVDFMVSITKDVADHITK 152
            YEK++  V  P   + F V ++K++ +H+  
Sbjct: 133 EYEKISEEVAHPETLLQFCVEVSKEIDEHLLA 164
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A Length = 122 Back     alignment and structure
>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155 Back     alignment and structure
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Length = 201 Back     alignment and structure
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Length = 159 Back     alignment and structure
>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Length = 159 Back     alignment and structure
>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Length = 157 Back     alignment and structure
>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Length = 155 Back     alignment and structure
>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Length = 158 Back     alignment and structure
>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} Length = 165 Back     alignment and structure
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 Length = 147 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query153
2wql_A154 Major allergen DAU C 1; pathogenesis-related prote 100.0
2vjg_A154 Major allergen DAU C 1; major carrot allergen, pat 100.0
3ie5_A165 Phenolic oxidative coupling protein HYP-1; hyperic 100.0
4a8u_A159 Major pollen allergen BET V 1-J; PR-10 protein; 1. 100.0
2i9y_A166 Major latex protein-like protein 28 or MLP-like pr 100.0
3rws_A168 MTN13 protein; zeatin, cytokinin, hormone, lucerne 100.0
2flh_A155 Cytokinin-specific binding protein; zeatin, pathog 100.0
2qim_A158 PR10.2B; trans-zeatin, cytokinin, plant hormones, 100.0
1e09_A159 PRU AV 1; allergen, major cherry allergen, pathoge 100.0
1tw0_A157 Pathogenesis-related class 10 protein SPE-16; seve 100.0
2vq5_A201 S-norcoclaurine synthase; lyase, S- norcoclaurine 100.0
1icx_A155 Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, 100.0
1vjh_A122 BET V I allergen family; structural genomics, cent 100.0
3jrs_A208 PYL1, putative uncharacterized protein AT5G46790; 99.97
3rt2_A183 Abscisic acid receptor PYL10; ABA-independent PP2C 99.97
3kl1_A190 PYL2, putative uncharacterized protein AT2G26040; 99.97
3oqu_A205 Abscisic acid receptor PYL9; RCAR1, hormone recept 99.96
3k3k_A211 Abscisic acid receptor PYR1; ABA receptor, plant h 99.96
3f08_A146 Uncharacterized protein Q6HG14; NESG Q6HG14_bachk 99.96
3p51_A160 Uncharacterized protein; structural genomics, PSI- 99.96
3qrz_A223 Abscisic acid receptor PYL5; crystal, hormone rece 99.94
3oji_A189 Abscisic acid receptor PYL3; crystal, PP2C, pyraba 99.94
2le1_A151 Uncharacterized protein; structural genomics, nort 99.92
3tl1_A159 WHIE ORF VI, polyketide cyclase; helix-GRIP fold, 99.66
2d4r_A147 Hypothetical protein TTHA0849; start domain, struc 99.64
3tfz_A172 Cyclase; helix-GRIP, BET V1-like superfamily, bios 99.62
3tvq_A169 Multifunctional cyclase-dehydratase-3-O-methyl TR 99.61
3ijt_A155 SMU.440, putative uncharacterized protein; hypothe 99.47
1t17_A148 Conserved hypothetical protein; beta-alpha-beta-BE 99.42
2pcs_A162 Conserved protein; structural genomics, unknown fu 99.36
2ns9_A157 Hypothetical protein APE2225; uncharacterized cons 99.29
3ggn_A155 Uncharacterized protein DR_A0006; structural genom 99.29
3p9v_A161 Uncharacterized protein; structural genomics, PSI- 99.12
1z94_A147 Conserved hypothetical protein; NESG, CV1439, stru 98.91
2leq_A146 Uncharacterized protein; start domains, structural 98.91
1xn6_A143 Hypothetical protein BC4709; structural genomics, 98.77
2lcg_A142 Uncharacterized protein; start domain, structural 98.74
2il5_A171 Hypothetical protein; structural genomics, APC2365 98.65
1xuv_A178 Hypothetical protein MM0500; alpha-beta protein, n 98.65
3rd6_A161 MLL3558 protein; structural genomics, PSI-biology, 98.56
2l8o_A144 Uncharacterized protein; mixed alpha-beta protein, 98.54
1xn5_A146 BH1534 unknown conserved protein; structural genom 98.48
3put_A166 Hypothetical conserved protein; structural genomic 98.48
2lgh_A144 Uncharacterized protein; AHSA1, start domain, COG3 98.48
2lak_A160 AHSA1-like protein RHE_CH02687; NESG, structural g 98.46
3q64_A162 MLL3774 protein; structural genomics, PSI-biology, 98.41
3pu2_A164 Uncharacterized protein; SRPBCC superfamily, PSI-b 98.39
2ldk_A172 Uncharacterized protein; structural genomics, nort 98.38
1xfs_A178 NC_840354, conserved hypothetical protein; structu 98.36
3q6a_A135 Uncharacterized protein; structural genomics, PSI- 98.35
2qpv_A156 Uncharacterized protein ATU1531; structural genomi 98.31
2kew_A152 Uncharacterized protein YNDB; start domain, resona 98.21
2nn5_A184 Hypothetical protein EF_2215; structural genomics, 98.2
3eli_A152 AHSA1, AHA1 domain protein; alpha-beta protein, st 98.19
2lf2_A175 Uncharacterized protein; NESG, structural genomics 98.18
3uid_A168 Putative uncharacterized protein; SRPBCC superfami 98.17
2l9p_A164 Uncharacterized protein; structural genomics, nort 98.16
3q63_A151 MLL2253 protein; structural genomics, PSI-biology, 98.04
3qsz_A189 STAR-related lipid transfer protein; structural ge 97.84
1x53_A145 Activator of 90 kDa heat shock protein ATPase homo 97.78
2k5g_A191 Uncharacterized protein; structural genomiccs, pro 97.71
3ni8_A158 PFC0360W protein; heat shock, malaria, ATPase, str 97.57
4fpw_A181 CALU16; structural genomics, PSI-biology, northeas 97.57
3oh8_A 516 Nucleoside-diphosphate sugar epimerase (SULA FAMI; 97.55
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 97.21
2lio_A136 Uncharacterized protein; structural genomics, nort 97.2
2luz_A192 CALU16; structural genomics, northeast structural 97.17
2ffs_A157 Hypothetical protein PA1206; 7-stranded beta sheet 96.47
1zxf_A155 CALC; SELF-sacrificing resistance protein, structu 94.96
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 93.11
2e3n_A255 Lipid-transfer protein CERT; ceramide transfer, li 93.04
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 91.97
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 90.25
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 86.39
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 86.01
>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A Back     alignment and structure
Probab=100.00  E-value=3.8e-48  Score=289.74  Aligned_cols=148  Identities=18%  Similarity=0.231  Sum_probs=137.4

Q ss_pred             CCcceEEEEEEEEcCCHHHHHHHH-hcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCC
Q 031775            1 MALVGKIEKQIEIEVPAEKFYHIW-KKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDA   78 (153)
Q Consensus         1 M~~~~k~~~ei~i~~~a~k~w~~~-~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e   78 (153)
                      |+ .++++.|+++++||+|+|+++ +|+++++|||+|++|+|++ +||| |++||||+|+|.+|++..++|||++ +|++
T Consensus         1 mg-v~~~~~E~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~-veGd-g~~Gsir~~t~~~g~~~~~~kErle~iD~~   77 (154)
T 2wql_A            1 MG-AQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVE-VKGD-GGAGTVRIITLPEGSPITTMTVRTDAVNKE   77 (154)
T ss_dssp             ---CCEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEE-EESS-SSTTCEEEEECCTTCSCCEEEEEEEEEETT
T ss_pred             CC-CeEEEEEEEecCCHHHHHHHHhhcccccchhhcccceeEEE-EECC-CCCCeEEEEEEcCCCCceEEEEEEEEEehh
Confidence            77 699999999999999999987 5998899999999999999 6999 6899999999999999899999999 9999


Q ss_pred             CcEEEEEEEecccc-cceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCChhhHHH---HHHHHHHHHHhhhhcC
Q 031775           79 NMSVTLIGLEGDVF-KHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAYVD---FMVSITKDVADHITKG  153 (153)
Q Consensus        79 ~~~~~y~vieGd~~-~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p~~~~~---~~~~~~k~ve~yll~~  153 (153)
                      ||+|+|++||||++ .+|++|+++++|+|.++||  |+++|+++|++++++.++|+.+++   .+.++||+||+|||||
T Consensus        78 ~~~~~y~iieGd~l~~~~~~~~~~ikv~p~~~gg--svvk~t~~Y~~~~~~~~~ee~~~~~~~~~~~~~KaiEayLlan  154 (154)
T 2wql_A           78 ALSYDSTVIDGDILLGFIESIETHMVVVPTADGG--SITKTTAIFHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN  154 (154)
T ss_dssp             TTEEEEEEEESGGGTTTEEEEEEEEEEEECTTSC--EEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hCEEEEEEEeccccccceEEEEEEEEEeeCCCCc--EEEEEEEEEEECCCCCCCHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence            99999999999964 7999999999999999987  999999999999999999988755   4789999999999998
>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0 Back     alignment and structure
>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Back     alignment and structure
>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Back     alignment and structure
>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Back     alignment and structure
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Back     alignment and structure
>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Back     alignment and structure
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Back     alignment and structure
>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Back     alignment and structure
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A Back     alignment and structure
>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} Back     alignment and structure
>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Back     alignment and structure
>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Back     alignment and structure
>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana} Back     alignment and structure
>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A* Back     alignment and structure
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A Back     alignment and structure
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} Back     alignment and structure
>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A* Back     alignment and structure
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Back     alignment and structure
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A Back     alignment and structure
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 Back     alignment and structure
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP} Back     alignment and structure
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A Back     alignment and structure
>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A Back     alignment and structure
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6 Back     alignment and structure
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10 Back     alignment and structure
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10 Back     alignment and structure
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A Back     alignment and structure
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei} Back     alignment and structure
>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5 Back     alignment and structure
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii} Back     alignment and structure
>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5 Back     alignment and structure
>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans} Back     alignment and structure
>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5 Back     alignment and structure
>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5 Back     alignment and structure
>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti} Back     alignment and structure
>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii} Back     alignment and structure
>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5 Back     alignment and structure
>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A* Back     alignment and structure
>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp} Back     alignment and structure
>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli} Back     alignment and structure
>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti} Back     alignment and structure
>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides} Back     alignment and structure
>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens} Back     alignment and structure
>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5 Back     alignment and structure
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp} Back     alignment and structure
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8 Back     alignment and structure
>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A Back     alignment and structure
>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5 Back     alignment and structure
>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5 Back     alignment and structure
>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii} Back     alignment and structure
>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0 Back     alignment and structure
>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis} Back     alignment and structure
>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti} Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Back     alignment and structure
>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5 Back     alignment and structure
>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5 Back     alignment and structure
>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum} Back     alignment and structure
>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A Back     alignment and structure
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Back     alignment and structure
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Back     alignment and structure
>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora} Back     alignment and structure
>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7 Back     alignment and structure
>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A* Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Back     alignment and structure
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* Back     alignment and structure
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Back     alignment and structure
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 153
d1vjha_120 d.129.3.1 (A:) Hypothetical protein At1G24000 {Tha 5e-27
d1fm4a_159 d.129.3.1 (A:) Major tree pollen allergen {Europea 2e-22
d1e09a_159 d.129.3.1 (A:) Major tree pollen allergen {Sweet c 3e-22
d2bk0a1153 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery 2e-21
d1xdfa1157 d.129.3.1 (A:1-157) Plant pathogenesis-related pro 3e-21
d1icxa_155 d.129.3.1 (A:) Plant pathogenesis-related protein 3e-19
d1txca1147 d.129.3.1 (A:1-147) Plant pathogenesis-related pro 1e-16
>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 96.0 bits (239), Expect = 5e-27
 Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 35/151 (23%)

Query: 3   LVGKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSV 62
           L G +  + +++ PA+KF+  +                 V+     +  +G         
Sbjct: 3   LKGALSVKFDVKCPADKFFSAF-----------------VEDTNRPFEKNG--------- 36

Query: 63  EGRTETFKEKVE-HDDANMSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIA 121
                  K ++E  D    ++T+     ++ K+FK+      V+P G G  GS    +  
Sbjct: 37  -------KTEIEAVDLVKKTMTIQMSGSEIQKYFKTLKGSIAVTPIGVGD-GSHVVWTFH 88

Query: 122 YEKLNANVPDPVAYVDFMVSITKDVADHITK 152
           +EK++ ++ DP + +D  V   K + + I  
Sbjct: 89  FEKVHKDIDDPHSIIDESVKYFKKLDEAILN 119
>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Length = 159 Back     information, alignment and structure
>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Length = 159 Back     information, alignment and structure
>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Length = 153 Back     information, alignment and structure
>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 157 Back     information, alignment and structure
>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 155 Back     information, alignment and structure
>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Length = 147 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query153
d2bk0a1153 Major allergen api g 1 {Celery (Apium graveolens) 100.0
d1e09a_159 Major tree pollen allergen {Sweet cherry (Prunus a 100.0
d1fm4a_159 Major tree pollen allergen {European white birch ( 100.0
d1icxa_155 Plant pathogenesis-related protein PR10 {Yellow lu 100.0
d1xdfa1157 Plant pathogenesis-related protein PR10 {Yellow lu 100.0
d1txca1147 Plant pathogenesis-related protein PR10 {Jicama (P 100.0
d1vjha_120 Hypothetical protein At1G24000 {Thale cress (Arabi 100.0
d3cnwa1138 Uncharacterized protein XoxI {Bacillus cereus [Tax 99.92
d2d4ra1146 Hypothetical protein TTHA0849 {Thermus thermophilu 99.65
d2rera1155 Multifunctional enzyme TcmN, cyclase/aromatase dom 99.55
d2b79a1137 Hypothetical protein SMU440 {Streptococcus mutans 99.41
d2ns9a1147 Hypothetical protein APE2225 {Aeropyrum pernix [Ta 99.36
d1t17a_148 Hypothetical protein CC1736 {Caulobacter crescentu 99.07
d2qpva1133 Uncharacterized protein Atu1531 {Agrobacterium tum 99.02
d2pcsa1147 Hypothetical protein GKP20 {Geobacillus kaustophil 98.95
d1xuva_163 Hypothetical protein MM0500 {Methanosarcina mazei 98.72
d1z94a1143 Hypothetical protein CV1439 {Chromobacterium viola 98.4
d2il5a1164 Hypothetical protein SA2116 {Staphylococcus aureus 98.31
d1xfsa_165 Hypothetical protein NE0264 {Nitrosomonas europaea 98.05
d3elia1143 Uncharacterized protein SPO3351 {Silicibacter pome 97.95
d1xn5a_138 Hypothetical protein BH1534 {Bacillus halodurans [ 97.71
d2nn5a1160 Hypothetical protein EF2215 {Enterococcus faecalis 97.55
d1xn6a_143 Hypothetical protein BC4709 {Bacillus cereus [TaxI 97.09
d2ffsa1151 Hypothetical protein PA1206 {Pseudomonas aeruginos 96.84
d1x53a1132 Activator of 90 kda heat shock protein ATPase homo 96.75
d1zxfa1155 Calicheamicin gene cluster protein CalC {Micromono 96.6
d2k5ga1183 Uncharacterized protein BPP1335 {Bordetella parape 96.54
d1jssa_199 Cholesterol-regulated Start protein 4 (Stard4). {M 95.79
d1em2a_214 Lipid transport domain of Mln64 {Human (Homo sapie 93.62
>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=100.00  E-value=1.1e-47  Score=285.16  Aligned_cols=146  Identities=18%  Similarity=0.274  Sum_probs=137.2

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHh-cccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCCcE
Q 031775            4 VGKIEKQIEIEVPAEKFYHIWK-KQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDANMS   81 (153)
Q Consensus         4 ~~k~~~ei~i~~~a~k~w~~~~-d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~   81 (153)
                      ..+++.|+++++||+|+|++|. |.++++||++|++|++|+ +||| |++||||.|+|.++++..++|||++ +|++|++
T Consensus         2 v~t~e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~sve-veGd-G~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~   79 (153)
T d2bk0a1           2 VQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVE-IKGD-GGPGTLKIITLPDGGPITTMTLRIDGVNKEALT   79 (153)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEE-EESS-SSTTCEEEEECCTTSSCCEEEEEEEEEETTTTE
T ss_pred             ceEEEEEEeccCCHHHHHHHHhhcccccccccccceeeEEE-EECC-CCCCeEEEEEEecCccceeeEEEEEEEecCccE
Confidence            4689999999999999999985 887889999999999999 5999 7999999999999999999999999 9999999


Q ss_pred             EEEEEEeccc-ccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCChhhH---HHHHHHHHHHHHhhhhcC
Q 031775           82 VTLIGLEGDV-FKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAY---VDFMVSITKDVADHITKG  153 (153)
Q Consensus        82 ~~y~vieGd~-~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p~~~---~~~~~~~~k~ve~yll~~  153 (153)
                      ++|++||||. ++.|++|+.+++++|.++||  |+|+|+++||++++..++|+.+   ++.+++|+|+||+|||||
T Consensus        80 ~~y~viEGd~l~~~y~s~~~~~~~~~~~~gg--sv~k~t~eYe~~~~~~~~~e~~k~~~e~~~~~~K~iE~YLlan  153 (153)
T d2bk0a1          80 FDYSVIDGDILLGFIESIENHVVLVPTADGG--SICKTTAIFHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN  153 (153)
T ss_dssp             EEEEEEESGGGTTTEEEEEEEEEEEECTTSC--EEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEecccccccEEEEEEEEEEecCCCCC--eEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999995 58899999999999999987  9999999999999999999876   567999999999999998
>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Back     information, alignment and structure
>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Back     information, alignment and structure
>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Back     information, alignment and structure
>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Back     information, alignment and structure
>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Back     information, alignment and structure
>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]} Back     information, alignment and structure
>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]} Back     information, alignment and structure
>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]} Back     information, alignment and structure
>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]} Back     information, alignment and structure
>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]} Back     information, alignment and structure
>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]} Back     information, alignment and structure
>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]} Back     information, alignment and structure
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure