Citrus Sinensis ID: 031786

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGELRPEVW
Secondary Structure (PSIPRED)
cHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEcccEcccccccccccccccccccc
Coil and Loop (DISEMBL)
mteamirkkpgmasvkdmpvlqdgpppggfapvryarriptkgpSAMALFLAAFGAFSygmyqvgkgnkirrfmsNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMkdvpgwkvgenvynsgrwmppasgelrpevw
Flexible Loop (DISEMBL)
mteamirkkpgmasvkdmpvlqdgppPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAevmkdvpgwkvgenvynsgrwmppasgelrpevw
Low Complexity Region (SEG)
MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSamalflaafgafSYGMYQVGKGNKIRRFMSNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGELRPEVW
Disordered region (IsUnstruct)
********************************VRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRW*************
Disordered Region (DISOPRED)
*********P*****K*****QDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASG***PEV*
Disordered Region (DISEMBL)
**********GMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPAS********
Disordered Region (DISPRO)
*TEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGELRPEVW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	153	2.2.26 [Sep-21-2011]
O49313	143	NADH dehydrogenase [ubiqu	yes	no	0.934	1.0	0.830	5e-68
Q8RWA7	143	NADH dehydrogenase [ubiqu	yes	no	0.934	1.0	0.823	2e-67
Q9P0J0	144	NADH dehydrogenase [ubiqu	yes	no	0.777	0.826	0.434	1e-24
Q0MQ90	144	NADH dehydrogenase [ubiqu	yes	no	0.777	0.826	0.434	1e-24
Q0MQ89	144	NADH dehydrogenase [ubiqu	N/A	no	0.777	0.826	0.434	1e-24
Q4R6H1	163	NADH dehydrogenase [ubiqu	N/A	no	0.823	0.773	0.411	4e-24
Q95KV7	144	NADH dehydrogenase [ubiqu	yes	no	0.777	0.826	0.434	4e-24
Q0MQ88	144	NADH dehydrogenase [ubiqu	N/A	no	0.777	0.826	0.426	2e-23
Q9ERS2	144	NADH dehydrogenase [ubiqu	yes	no	0.777	0.826	0.410	7e-23
Q86IZ2	113	NADH dehydrogenase [ubiqu	yes	no	0.627	0.849	0.307	0.0002

>sp|O49313|NDADB_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Arabidopsis thaliana GN=At2g33220 PE=2 SV=1

 Score =  256 bits (653), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 127/153 (83%), Positives = 136/153 (88%), Gaps = 10/153 (6%)

Query: 1   MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYG 60
           MTEAMIRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMA+FL   GAF++G
Sbjct: 1   MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWG 60

Query: 61  MYQVGKGNKIRRFMSNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAE 120
           MYQVG+GNKIRR          ALKEEKYAARRAILP+LQAEEDERFV EWKKYLEYEA+
Sbjct: 61  MYQVGQGNKIRR----------ALKEEKYAARRAILPILQAEEDERFVSEWKKYLEYEAD 110

Query: 121 VMKDVPGWKVGENVYNSGRWMPPASGELRPEVW 153
           VMKDVPGWKVGENVYNSGRWMPPA+GELRP+VW
Sbjct: 111 VMKDVPGWKVGENVYNSGRWMPPATGELRPDVW 143

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWA7|NDADA_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A OS=Arabidopsis thaliana GN=MEE4 PE=2 SV=1

 Score =  254 bits (648), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 126/153 (82%), Positives = 135/153 (88%), Gaps = 10/153 (6%)

Query: 1   MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYG 60
           MTEAMIR KPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMA+FLA  GAF++G
Sbjct: 1   MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWG 60

Query: 61  MYQVGKGNKIRRFMSNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAE 120
           MYQVG+GNKIRR          ALKEEKYAARR ILP+LQAEEDERFV EWKKYLEYEA+
Sbjct: 61  MYQVGQGNKIRR----------ALKEEKYAARRTILPILQAEEDERFVSEWKKYLEYEAD 110

Query: 121 VMKDVPGWKVGENVYNSGRWMPPASGELRPEVW 153
           VMKDVPGWKVGENVYNSGRWMPPA+GELRP+VW
Sbjct: 111 VMKDVPGWKVGENVYNSGRWMPPATGELRPDVW 143

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9P0J0|NDUAD_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens GN=NDUFA13 PE=1 SV=3

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/129 (43%), Positives = 79/129 (61%), Gaps = 10/129 (7%)

Query: 20  VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNY 79
           V QD PPPGG+ P+ Y R +P +G S  ++     G   YG + + K N+ RR       
Sbjct: 6   VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERR------- 58

Query: 80  FYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGR 139
               L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ R
Sbjct: 59  ---RLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTR 115

Query: 140 WMPPASGEL 148
           W+PP  GEL
Sbjct: 116 WVPPLIGEL 124

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. Involved in the interferon/all-trans-retinoic acid (IFN/RA) induced cell death. This apoptotic activity is inhibited by interaction with viral IRF1. Prevents the transactivation of STAT3 target genes. May play a role in CARD15-mediated innate mucosal responses and serve to regulate intestinal epithelial cell responses to microbes.

Homo sapiens (taxid: 9606)

>sp|Q0MQ90|NDUAD_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pan troglodytes GN=NDUFA13 PE=2 SV=3

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/129 (43%), Positives = 79/129 (61%), Gaps = 10/129 (7%)

Query: 20  VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNY 79
           V QD PPPGG+ P+ Y R +P +G S  ++     G   YG + + K N+ RR       
Sbjct: 6   VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERR------- 58

Query: 80  FYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGR 139
               L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ R
Sbjct: 59  ---RLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTR 115

Query: 140 WMPPASGEL 148
           W+PP  GEL
Sbjct: 116 WVPPLIGEL 124

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

>sp|Q0MQ89|NDUAD_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla gorilla GN=NDUFA13 PE=2 SV=3

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/129 (43%), Positives = 79/129 (61%), Gaps = 10/129 (7%)

Query: 20  VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNY 79
           V QD PPPGG+ P+ Y R +P +G S  ++     G   YG + + K N+ RR       
Sbjct: 6   VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERR------- 58

Query: 80  FYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGR 139
               L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ R
Sbjct: 59  ---RLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTR 115

Query: 140 WMPPASGEL 148
           W+PP  GEL
Sbjct: 116 WVPPLIGEL 124

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q4R6H1|NDUAD_MACFA NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Macaca fascicularis GN=NDUFA13 PE=2 SV=1

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 82/136 (60%), Gaps = 10/136 (7%)

Query: 13  ASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRR 72
           AS++   V QD PPPGG+ P+ Y R +P +G S  ++     G   YG + + K N+ RR
Sbjct: 18  ASMEMPKVKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLVYGHWSIMKWNRERR 77

Query: 73  FMSNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGE 132
                      L+ E + AR A++P+ QAE D R ++  ++ LE EA +MKDVP WKVGE
Sbjct: 78  ----------RLQIEDFEARIALMPLFQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGE 127

Query: 133 NVYNSGRWMPPASGEL 148
           +V+++ RW+PP  GEL
Sbjct: 128 SVFHTTRWVPPLIGEL 143

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Macaca fascicularis (taxid: 9541)

>sp|Q95KV7|NDUAD_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Bos taurus GN=NDUFA13 PE=1 SV=3

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/129 (43%), Positives = 81/129 (62%), Gaps = 10/129 (7%)

Query: 20  VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNY 79
           V QD PP GG+ P+ Y R +P +G S  ++F    GA  +G + + K N+ RR       
Sbjct: 6   VKQDMPPVGGYGPIDYKRNLPRRGLSGYSMFAVGIGALLFGYWSMMKWNRERR------- 58

Query: 80  FYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGR 139
               L+ E + AR A++P+LQAE+D R ++  ++ LE EA VMKDVPGWKVGE+V+++ R
Sbjct: 59  ---RLQIEDFEARIALMPLLQAEKDRRVLQMLRENLEEEATVMKDVPGWKVGESVFHTTR 115

Query: 140 WMPPASGEL 148
           W+ P  GEL
Sbjct: 116 WVTPMMGEL 124

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. Involved in the interferon/all-trans-retinoic acid (IFN/RA) cell death pathway. May play a role in CARD15-mediated innate mucosal responses and serve to regulate intestinal epithelial cell responses to microbes.

Bos taurus (taxid: 9913)

>sp|Q0MQ88|NDUAD_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pongo pygmaeus GN=NDUFA13 PE=2 SV=3

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 78/129 (60%), Gaps = 10/129 (7%)

Query: 20  VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNY 79
           V QD PPPGG+ P+ Y R +P +G S  ++     G   YG + + K N+ RR       
Sbjct: 6   VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLALGIGTLIYGHWSMMKWNRERR------- 58

Query: 80  FYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGR 139
               L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ R
Sbjct: 59  ---RLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTR 115

Query: 140 WMPPASGEL 148
           W+ P  GEL
Sbjct: 116 WVAPLIGEL 124

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

>sp|Q9ERS2|NDUAD_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Mus musculus GN=Ndufa13 PE=1 SV=3

 Score =  105 bits (263), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 80/129 (62%), Gaps = 10/129 (7%)

Query: 20  VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNY 79
           V QD PPPGG+ P+ Y R +P +G S  ++F    GA  +G +++ + N+ RR       
Sbjct: 6   VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMFAVGIGALIFGYWRMMRWNQERR------- 58

Query: 80  FYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGR 139
               L  E   AR A++P+ QAE+D R ++  ++ LE EA +MKDVP WKVGE+V+++ R
Sbjct: 59  ---RLLIEDLEARIALMPLFQAEKDRRTLQILRENLEEEAIIMKDVPNWKVGESVFHTTR 115

Query: 140 WMPPASGEL 148
           W+PP  GE+
Sbjct: 116 WVPPLIGEM 124

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. Involved in the interferon/all-trans-retinoic acid (IFN/RA) cell death pathway. May play a role in CARD15-mediated innate mucosal responses and serve to regulate intestinal epithelial cell responses to microbes.

Mus musculus (taxid: 10090)

>sp|Q86IZ2|NDUAD_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Dictyostelium discoideum GN=ndufa13 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 31/127 (24%)

Query: 21  LQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNYF 80
           +QD PP GGF  ++YAR   +  P A  +F   F   + G Y +   +K+ R        
Sbjct: 9   VQDLPPAGGFPKLKYARTSTSPIPGAY-IFAGVFSIMAVGTY-IFFSDKVERN------- 59

Query: 81  YWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRW 140
             A +EE+      ILP+LQAE D  F+                       +NVY + RW
Sbjct: 60  --AREEEEKRRLSMILPILQAENDINFLASPH-------------------QNVYFT-RW 97

Query: 141 MPPASGE 147
           MPP +G+
Sbjct: 98  MPPQTGK 104

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Dictyostelium discoideum (taxid: 44689)

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
TAIR|locus:2046575	143	AT2G33220 "AT2G33220" [Arabido	0.934	1.0	0.777	2.4e-60
TAIR|locus:2197833	143	MEE4 "AT1G04630" [Arabidopsis	0.934	1.0	0.764	2.2e-59
UNIPROTKB|Q9P0J0	144	NDUFA13 "NADH dehydrogenase [u	0.777	0.826	0.426	5.5e-22
UNIPROTKB|Q0MQ89	144	NDUFA13 "NADH dehydrogenase [u	0.777	0.826	0.426	5.5e-22
UNIPROTKB|Q0MQ90	144	NDUFA13 "NADH dehydrogenase [u	0.777	0.826	0.426	5.5e-22
UNIPROTKB|Q4R6H1	163	NDUFA13 "NADH dehydrogenase [u	0.797	0.748	0.413	7e-22
UNIPROTKB|F1P909	146	NDUFA13 "Uncharacterized prote	0.823	0.863	0.397	3e-21
UNIPROTKB|Q95KV7	144	NDUFA13 "NADH dehydrogenase [u	0.777	0.826	0.410	6.3e-21
UNIPROTKB|Q0MQ88	144	NDUFA13 "NADH dehydrogenase [u	0.777	0.826	0.418	6.3e-21
UNIPROTKB|F1S6Q1	144	NDUFA13 "Uncharacterized prote	0.777	0.826	0.395	2.1e-20

TAIR|locus:2046575 AT2G33220 "AT2G33220" [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 119/153 (77%), Positives = 127/153 (83%)

Query:     1 MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYG 60
             MTEAMIRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPS            ++G
Sbjct:     1 MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWG 60

Query:    61 MYQVGKGNKIRRFMSNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAE 120
             MYQVG+GNKIRR          ALKEEKYAARRAILP+LQAEEDERFV EWKKYLEYEA+
Sbjct:    61 MYQVGQGNKIRR----------ALKEEKYAARRAILPILQAEEDERFVSEWKKYLEYEAD 110

Query:   121 VMKDVPGWKVGENVYNSGRWMPPASGELRPEVW 153
             VMKDVPGWKVGENVYNSGRWMPPA+GELRP+VW
Sbjct:   111 VMKDVPGWKVGENVYNSGRWMPPATGELRPDVW 143

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0009853 "photorespiration" evidence=RCA;TAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

TAIR|locus:2197833 MEE4 "AT1G04630" [Arabidopsis thaliana (taxid:3702)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 117/153 (76%), Positives = 125/153 (81%)

Query:     1 MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYG 60
             MTEAMIR KPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPS            ++G
Sbjct:     1 MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWG 60

Query:    61 MYQVGKGNKIRRFMSNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAE 120
             MYQVG+GNKIRR          ALKEEKYAARR ILP+LQAEEDERFV EWKKYLEYEA+
Sbjct:    61 MYQVGQGNKIRR----------ALKEEKYAARRTILPILQAEEDERFVSEWKKYLEYEAD 110

Query:   121 VMKDVPGWKVGENVYNSGRWMPPASGELRPEVW 153
             VMKDVPGWKVGENVYNSGRWMPPA+GELRP+VW
Sbjct:   111 VMKDVPGWKVGENVYNSGRWMPPATGELRPDVW 143

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009853 "photorespiration" evidence=TAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

UNIPROTKB|Q9P0J0 NDUFA13 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 55/129 (42%), Positives = 76/129 (58%)

Query:    20 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRFMSNNNY 79
             V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR       
Sbjct:     6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERR------- 58

Query:    80 FYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGR 139
                 L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ R
Sbjct:    59 ---RLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTR 115

Query:   140 WMPPASGEL 148
             W+PP  GEL
Sbjct:   116 WVPPLIGEL 124

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0030308 "negative regulation of cell growth" evidence=IMP;IDA

GO:0030262 "apoptotic nuclear changes" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0097190 "apoptotic signaling pathway" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=NAS

GO:0005524 "ATP binding" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IDA

GO:0005746 "mitochondrial respiratory chain" evidence=IDA

GO:0017148 "negative regulation of translation" evidence=IDA

GO:0003954 "NADH dehydrogenase activity" evidence=IMP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q0MQ89 NDUFA13 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13" [Gorilla gorilla gorilla (taxid:9595)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 55/129 (42%), Positives = 76/129 (58%)

Query:    20 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRFMSNNNY 79
             V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR       
Sbjct:     6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERR------- 58

Query:    80 FYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGR 139
                 L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ R
Sbjct:    59 ---RLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTR 115

Query:   140 WMPPASGEL 148
             W+PP  GEL
Sbjct:   116 WVPPLIGEL 124

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005746 "mitochondrial respiratory chain" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0017148 "negative regulation of translation" evidence=ISS

GO:0030262 "apoptotic nuclear changes" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0097190 "apoptotic signaling pathway" evidence=ISS

UNIPROTKB|Q0MQ90 NDUFA13 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13" [Pan troglodytes (taxid:9598)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 55/129 (42%), Positives = 76/129 (58%)

Query:    20 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRFMSNNNY 79
             V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR       
Sbjct:     6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERR------- 58

Query:    80 FYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGR 139
                 L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ R
Sbjct:    59 ---RLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTR 115

Query:   140 WMPPASGEL 148
             W+PP  GEL
Sbjct:   116 WVPPLIGEL 124

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005746 "mitochondrial respiratory chain" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0017148 "negative regulation of translation" evidence=ISS

GO:0030262 "apoptotic nuclear changes" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0097190 "apoptotic signaling pathway" evidence=ISS

UNIPROTKB|Q4R6H1 NDUFA13 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13" [Macaca fascicularis (taxid:9541)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 55/133 (41%), Positives = 78/133 (58%)

Query:    17 DMP-VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRFMS 75
             +MP V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR   
Sbjct:    21 EMPKVKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLVYGHWSIMKWNRERR--- 77

Query:    76 NNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVY 135
                     L+ E + AR A++P+ QAE D R ++  ++ LE EA +MKDVP WKVGE+V+
Sbjct:    78 -------RLQIEDFEARIALMPLFQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVF 130

Query:   136 NSGRWMPPASGEL 148
             ++ RW+PP  GEL
Sbjct:   131 HTTRWVPPLIGEL 143

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005746 "mitochondrial respiratory chain" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0017148 "negative regulation of translation" evidence=ISS

GO:0030262 "apoptotic nuclear changes" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0097190 "apoptotic signaling pathway" evidence=ISS

UNIPROTKB|F1P909 NDUFA13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 54/136 (39%), Positives = 79/136 (58%)

Query:    13 ASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRR 72
             AS+    V QD PPPGG+ P+ Y R +P +G S             +G + + K N+ RR
Sbjct:     1 ASMAASKVKQDMPPPGGYGPIDYKRNLPRRGLSGYSMFAVGIGTLLFGYWSMMKWNRERR 60

Query:    73 FMSNNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGE 132
                        L+ E + AR A++P+LQAE+D R ++  ++ LE EA +MKDVP WKVGE
Sbjct:    61 ----------RLQIEDFEARIALMPLLQAEKDRRVLQMLRENLEEEAIIMKDVPDWKVGE 110

Query:   133 NVYNSGRWMPPASGEL 148
             +V+++ RW+ P  GEL
Sbjct:   111 SVFHTTRWVTPMMGEL 126

GO:0006915 "apoptotic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q95KV7 NDUFA13 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13" [Bos taurus (taxid:9913)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 53/129 (41%), Positives = 76/129 (58%)

Query:    20 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRFMSNNNY 79
             V QD PP GG+ P+ Y R +P +G S             +G + + K N+ RR       
Sbjct:     6 VKQDMPPVGGYGPIDYKRNLPRRGLSGYSMFAVGIGALLFGYWSMMKWNRERR------- 58

Query:    80 FYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGR 139
                 L+ E + AR A++P+LQAE+D R ++  ++ LE EA VMKDVPGWKVGE+V+++ R
Sbjct:    59 ---RLQIEDFEARIALMPLLQAEKDRRVLQMLRENLEEEATVMKDVPGWKVGESVFHTTR 115

Query:   140 WMPPASGEL 148
             W+ P  GEL
Sbjct:   116 WVTPMMGEL 124

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0005746 "mitochondrial respiratory chain" evidence=IDA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005654 "nucleoplasm" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0097190 "apoptotic signaling pathway" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0030262 "apoptotic nuclear changes" evidence=ISS

GO:0022900 "electron transport chain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q0MQ88 NDUFA13 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13" [Pongo pygmaeus (taxid:9600)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 54/129 (41%), Positives = 75/129 (58%)

Query:    20 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRFMSNNNY 79
             V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR       
Sbjct:     6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLALGIGTLIYGHWSMMKWNRERR------- 58

Query:    80 FYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGR 139
                 L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ R
Sbjct:    59 ---RLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTR 115

Query:   140 WMPPASGEL 148
             W+ P  GEL
Sbjct:   116 WVAPLIGEL 124

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005746 "mitochondrial respiratory chain" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0017148 "negative regulation of translation" evidence=ISS

GO:0030262 "apoptotic nuclear changes" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0097190 "apoptotic signaling pathway" evidence=ISS

UNIPROTKB|F1S6Q1 NDUFA13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 51/129 (39%), Positives = 75/129 (58%)

Query:    20 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRFMSNNNY 79
             V QD PPPGG+ P+ Y R +P +G S             +G + + K N+ RR       
Sbjct:     6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMFAVGIGTLLFGYWSMMKWNRERR------- 58

Query:    80 FYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGR 139
                 L+ E + AR A++P+ QAE+D R ++  ++ LE EA +MKDVP WKVGE+V+++ R
Sbjct:    59 ---RLQIEDFEARIALMPLFQAEKDRRVLQMLRENLEEEAIIMKDVPDWKVGESVFHTTR 115

Query:   140 WMPPASGEL 148
             W+ P  GEL
Sbjct:   116 WVTPMMGEL 124

GO:0006915 "apoptotic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49313	NDADB_ARATH	No assigned EC number	0.8300	0.9346	1.0	yes	no
Q8RWA7	NDADA_ARATH	No assigned EC number	0.8235	0.9346	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	153
pfam06212	130	pfam06212, GRIM-19, GRIM-19 protein	6e-55

>gnl|CDD|148050 pfam06212, GRIM-19, GRIM-19 protein

 Score =  168 bits (428), Expect = 6e-55
 Identities = 59/133 (44%), Positives = 81/133 (60%), Gaps = 10/133 (7%)

Query: 16  KDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMS 75
              PV QD PPPGG+ P+ + R +P  G S  A+F    GA ++G Y+  + NK RR   
Sbjct: 1   AASPVKQDMPPPGGYGPIPFKRNLPKTGFSGYAMFATGAGATAFGYYRYYEWNKERRR-- 58

Query: 76  NNNYFYWALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVY 135
                   L+ E  +AR AILP+LQAE D R++K+ ++  E EAE+MKDVPGWKVGE V+
Sbjct: 59  --------LEIEDRSARNAILPLLQAERDRRYLKQLRRNREEEAELMKDVPGWKVGEPVF 110

Query: 136 NSGRWMPPASGEL 148
            + RW+ P+  E 
Sbjct: 111 KTDRWVTPSFQEF 123

This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-# and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
PF06212	130	GRIM-19: GRIM-19 protein; InterPro: IPR009346 This	100.0
KOG3300	146	consensus NADH:ubiquinone oxidoreductase, B16.6 su	100.0

>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins

Probab=100.00  E-value=1.4e-63  Score=384.80  Aligned_cols=124  Identities=56%  Similarity=0.999  Sum_probs=122.0

Q ss_pred             CCCCCcccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHhh
Q 031786           16 KDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNYFYWALKEEKYAARRAI   95 (153)
Q Consensus        16 ~~~~~~QDmPPpGGY~pi~ykRnlP~rG~sg~~~~~~~~~~~~yG~y~~~~~nrerr~~~~~~~~~~~l~~E~~~aRial   95 (153)
                      ||+|++|||||+|||+||+|+||+|+|||||+++|++++++|+||||+++++|+++++          +++|+++||+||
T Consensus         1 ~~~~~~QDmPP~GGY~pv~y~R~~p~rg~sg~~~~~~~~~~~~~G~y~~~~~~r~~r~----------~~~E~~~ar~al   70 (130)
T PF06212_consen    1 KAMPYKQDMPPPGGYPPVQYKRNLPKRGPSGWTMFAGGAGIMAYGFYKVGQGNRERRE----------LKREKRWARIAL   70 (130)
T ss_pred             CCCcccCCCCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHH
Confidence            6889999999999999999999999999999999999999999999999999999999          999999999999


Q ss_pred             hhhhhhhHhHHHHHHHHHhHHHHHHhccCCCCcccccccccCCCccCCCCCCCC
Q 031786           96 LPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGELR  149 (153)
Q Consensus        96 ~PlLqAE~DR~~lr~lr~~~e~EaeiMkdVpGWkvGe~vY~t~rw~~P~~~el~  149 (153)
                      +||||||+||++||++++|+++|++||||||||||||||||||||++|+++|+.
T Consensus        71 ~PlLqAE~DR~~lr~~~~~~~~E~~lMkdVpgW~vGe~vY~t~r~~~P~~~e~y  124 (130)
T PF06212_consen   71 LPLLQAEEDRRYLRRLKANREEEAELMKDVPGWKVGEPVYNTDRWVPPTFDEYY  124 (130)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCcccCCcccCCcHHHHH
Confidence            999999999999999999999999999999999999999999999999999864

GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].

>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16

Probab=100.00  E-value=6.6e-62  Score=379.55  Aligned_cols=128  Identities=71%  Similarity=1.170  Sum_probs=126.9

Q ss_pred             ccccCCCCCcccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHH
Q 031786           12 MASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRFMSNNNYFYWALKEEKYAA   91 (153)
Q Consensus        12 m~s~~~~~~~QDmPPpGGY~pi~ykRnlP~rG~sg~~~~~~~~~~~~yG~y~~~~~nrerr~~~~~~~~~~~l~~E~~~a   91 (153)
                      |+||+|+|++|||||||||.||+|+|++|++|+||+++|++++|+++||+|.++++||+|+.          +++|+.+|
T Consensus         1 ~asv~~~~~kQDmPPpGGy~~i~y~R~~pk~~~Sg~t~~aa~~gatayG~~~~~~~~kk~rr----------~kiEd~~a   70 (146)
T KOG3300|consen    1 MASVKDMPLKQDMPPPGGYAPIRYARRIPKTGPSGMTMFAAVSGATAYGMYQVGQGNKKRRR----------LKIEDYAA   70 (146)
T ss_pred             CCccCCCcccccCCCCCCcCcccccccCCccCCCcchhhhHHHHHHHHHHHHHHhchhHHHH----------HHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999          99999999


Q ss_pred             HHhhhhhhhhhHhHHHHHHHHHhHHHHHHhccCCCCcccccccccCCCccCCCCCCCC
Q 031786           92 RRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGELR  149 (153)
Q Consensus        92 Rial~PlLqAE~DR~~lr~lr~~~e~EaeiMkdVpGWkvGe~vY~t~rw~~P~~~el~  149 (153)
                      |++|+|+||||+||++|++||+|+|+||+|||||||||||||||||.|||+|++.||+
T Consensus        71 ~nai~PiL~AErDr~~l~~lrkn~eeEaeiMKdVPgWkvGEpVy~Tlrwv~P~~~Ely  128 (146)
T KOG3300|consen   71 RNAILPILQAERDRRFLSELRKNLEEEAEIMKDVPGWKVGEPVYNTLRWVPPATGELY  128 (146)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHccCCCcccCccceecceecCcchhhhh
Confidence            9999999999999999999999999999999999999999999999999999999998

6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00