Citrus Sinensis ID: 031806

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSR
Secondary Structure (PSIPRED)
ccHHHHHcccccccccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
msfqdleagvrvppqnpfnaaKRKQQqqnqsqsqdPSQAVAAAIFQINTAVSSFYRLVnslgtpkdtLDLRDKLHKTRLHIGQLVKDTSSklkqaseadhhtevspirKIADAKLAKDFQSVLKEFQKAQRLAAErettyapfvpkeslssr
Flexible Loop (DISEMBL)
msfqdleagvrvppQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTrlhigqlvkdtssklkqaseadhhtevspirKIADAKLAKDFQSVLKEFQKAQRlaaerettyapfvpkeslssr
Low Complexity Region (SEG)
MSFQDLEAGVRVPPQNPFNAAKRKqqqqnqsqsqdpsqAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSR
Disordered region (IsUnstruct)
***************************************VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQL********************************************************************
Disordered Region (DISOPRED)
MSFQD********************************QAVAAAIFQINTAVSSFYRLV********************LH*GQLVKDTSSKL*********************KLAKDFQSVLKEFQKA***********************
Disordered Region (DISEMBL)
MSFQDLEAGVRVPPQNPF*********************VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDT****************SPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSR
Disordered Region (DISPRO)
*****************************QSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPF*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	152	2.2.26 [Sep-21-2011]
Q39233	279	Syntaxin-21 OS=Arabidopsi	yes	no	0.940	0.512	0.707	4e-52
P93654	268	Syntaxin-22 OS=Arabidopsi	no	no	0.914	0.518	0.662	1e-50
O04378	255	Syntaxin-23 OS=Arabidopsi	no	no	0.927	0.552	0.642	2e-46
Q9C615	416	Putative syntaxin-24 OS=A	no	no	0.506	0.185	0.649	7e-22
Q5R602	261	Syntaxin-7 OS=Pongo abeli	yes	no	0.756	0.440	0.338	1e-07
Q3ZBT5	261	Syntaxin-7 OS=Bos taurus	yes	no	0.756	0.440	0.338	2e-07
O15400	261	Syntaxin-7 OS=Homo sapien	yes	no	0.756	0.440	0.338	5e-07
Q96NA8	513	t-SNARE domain-containing	no	no	0.552	0.163	0.333	9e-07
Q54JY7	356	Syntaxin-7A OS=Dictyostel	yes	no	0.703	0.300	0.321	3e-06
O70257	261	Syntaxin-7 OS=Rattus norv	yes	no	0.756	0.440	0.347	6e-06

>sp|Q39233|SYP21_ARATH Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1

 Score =  202 bits (515), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/147 (70%), Positives = 116/147 (78%), Gaps = 4/147 (2%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQDLEAG R P  N F   +    QQ  S   DPSQ VAA IF+I+TAV+SF+RLVNS
Sbjct: 1   MSFQDLEAGTRSPAPNRFTGGR----QQRPSSRGDPSQEVAAGIFRISTAVNSFFRLVNS 56

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           +GTPKDTL+LRDKL KTRL I +LVK+TS+KLK+ASEAD H   S I+KIADAKLAKDFQ
Sbjct: 57  IGTPKDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQ 116

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKE 147
           SVLKEFQKAQRLAAERE TY P V KE
Sbjct: 117 SVLKEFQKAQRLAAEREITYTPVVTKE 143

May function in the docking or fusion of transport vesicles with the prevacuolar membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|P93654|SYP22_ARATH Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 100/151 (66%), Positives = 118/151 (78%), Gaps = 12/151 (7%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQDLE+G R      FN  +           QD +QAVA+ IFQINT VS+F RLVN+
Sbjct: 1   MSFQDLESG-RGRSTRKFNGGR-----------QDSTQAVASGIFQINTGVSTFQRLVNT 48

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           LGTPKDT +LR+KLHKTRLHIGQLVKDTS+KLK+ASE DH + V+P +KIADAKLA+DFQ
Sbjct: 49  LGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQ 108

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +VLKEFQKAQ+ AAERETTY PFVP+ +L S
Sbjct: 109 AVLKEFQKAQQTAAERETTYTPFVPQSALPS 139

May provide the t-SNARE function in the vacuolar assembly.

Arabidopsis thaliana (taxid: 3702)

>sp|O04378|SYP23_ARATH Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=1 SV=1

 Score =  184 bits (467), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 99/154 (64%), Positives = 114/154 (74%), Gaps = 13/154 (8%)

Query: 1   MSFQDLEAG---VRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRL 57
           MSFQDLEAG        +N      R          QD +Q VA+ IFQINT+VS+F+RL
Sbjct: 1   MSFQDLEAGRGRSLASSRNINGGGSR----------QDTTQDVASGIFQINTSVSTFHRL 50

Query: 58  VNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAK 117
           VN+LGTPKDT +LR+KLHKTRL+IGQLVKDTS+KLK+ASE DH   V+  +KI DAKLAK
Sbjct: 51  VNTLGTPKDTPELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRGVNQKKKIVDAKLAK 110

Query: 118 DFQSVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           DFQ+VLKEFQKAQRLAAERET YAP V K SL S
Sbjct: 111 DFQAVLKEFQKAQRLAAERETVYAPLVHKPSLPS 144

May function in the docking or fusion of transport vesicles with the prevacuolar membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1

 Score =  102 bits (255), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 60/77 (77%)

Query: 75  HKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAA 134
           HK  L IGQLVKDTS+ L++ASE DH  +V+  +KIADAKLAKDF++ LKEFQKAQ +  
Sbjct: 154 HKKMLLIGQLVKDTSANLREASETDHRRDVAQSKKIADAKLAKDFEAALKEFQKAQHITV 213

Query: 135 ERETTYAPFVPKESLSS 151
           ERET+Y PF PK S SS
Sbjct: 214 ERETSYIPFDPKGSFSS 230

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5R602|STX7_PONAB Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 6/121 (4%)

Query: 35  DPSQA---VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSK 91
           DP+Q    +++ I +I    +   R +N LGTP+D+ +LR +L + + +  QL K+T   
Sbjct: 10  DPAQLAQRISSNIQKITQCSAEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLTKETDKY 69

Query: 92  LKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +K+             RKI   +L  +F + L  FQK QR AAERE     FV +   SS
Sbjct: 70  IKEFGSLPTTPSEQRQRKIQKDRLVGEFTTSLTNFQKVQRQAAERE---KEFVARVRASS 126

Query: 152 R 152
           R
Sbjct: 127 R 127

May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles. Mediates the endocytic trafficking from early endosomes to late endosomes and lysosomes.

Pongo abelii (taxid: 9601)

>sp|Q3ZBT5|STX7_BOVIN Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 6/121 (4%)

Query: 35  DPSQA---VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSK 91
           DP+Q    +++ I +I    +   R +N LGTP+D+ +LR +L + + +  QL K+T   
Sbjct: 10  DPAQLAQRISSNIQKITQCSAEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKY 69

Query: 92  LKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +K+             RKI   +L  +F + L  FQK QR AAERE     FV +   SS
Sbjct: 70  IKEFGSLPTTPSDQRQRKIQKDRLVAEFTASLTNFQKVQRQAAERE---KEFVARVRASS 126

Query: 152 R 152
           R
Sbjct: 127 R 127

May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles. Mediates the endocytic trafficking from early endosomes to late endosomes and lysosomes.

Bos taurus (taxid: 9913)

>sp|O15400|STX7_HUMAN Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4

 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 6/121 (4%)

Query: 35  DPSQA---VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSK 91
           DP+Q    +++ I +I        R +N LGTP+D+ +LR +L + + +  QL K+T   
Sbjct: 10  DPAQLAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKY 69

Query: 92  LKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +K+             RKI   +L  +F + L  FQK QR AAERE     FV +   SS
Sbjct: 70  IKEFGSLPTTPSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAERE---KEFVARVRASS 126

Query: 152 R 152
           R
Sbjct: 127 R 127

May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles. Mediates the endocytic trafficking from early endosomes to late endosomes and lysosomes.

Homo sapiens (taxid: 9606)

>sp|Q96NA8|TSNA1_HUMAN t-SNARE domain-containing protein 1 OS=Homo sapiens GN=TSNARE1 PE=2 SV=2

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 14  PQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDK 73
           P   F+    +  Q +    Q+  Q ++A +F+IN++V+S  R + SLGTP DT +LRD 
Sbjct: 238 PSEGFSLEPPRATQVDPCNLQELFQEMSANVFRINSSVTSLERSLQSLGTPSDTQELRDS 297

Query: 74  LHKTRLHIGQLVKDTSSKLKQASE 97
           LH  +    + +  ++S +KQ +E
Sbjct: 298 LHTAQQETNKTIAASASSVKQMAE 321

Homo sapiens (taxid: 9606)

>sp|Q54JY7|STX7A_DICDI Syntaxin-7A OS=Dictyostelium discoideum GN=syn7A PE=1 SV=1

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 38  QAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASE 97
           Q+    I QI  AV    +LV  LGTPKD++D R+K+         L+   S K+K  + 
Sbjct: 89  QSTTRNIQQIQNAVQILTKLVQLLGTPKDSMDTREKIRNCVDSTTHLISSESGKVKNLTS 148

Query: 98  ADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERE-TTYAPFVP 145
               +  S   K+   KL K+F + L++F+   ++A ++E TT  P  P
Sbjct: 149 LASRSRDSK-NKLLYQKLVKEFNNCLQQFKDIAQVATKKEKTTPLPVAP 196

Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for fusion of late endosomes with lysosomes and homotypic lysosomal fusion. May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles.

Dictyostelium discoideum (taxid: 44689)

>sp|O70257|STX7_RAT Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 6/121 (4%)

Query: 35  DPSQA---VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSK 91
           DP+Q    +++ I +I    +   R +N LGTP+DT +LR +L + + +  QL K+T   
Sbjct: 10  DPAQLAQRISSNIQKITQCSAEIQRTLNQLGTPQDTPELRQQLQQEQQYTNQLAKETDKY 69

Query: 92  LKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +K+             RKI   +L  +F + L  FQK QR AAERE     FV +   SS
Sbjct: 70  IKEFGFLPTTPSEQRQRKIQKDRLVAEFTTALTNFQKVQRQAAERE---KEFVARVRASS 126

Query: 152 R 152
           R
Sbjct: 127 R 127

May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles. Mediates the endocytic trafficking from early endosomes to late endosomes and lysosomes.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
225454757	278	PREDICTED: syntaxin-22 [Vitis vinifera]	0.953	0.521	0.715	8e-55
356559009	273	PREDICTED: syntaxin-22-like [Glycine max	0.921	0.512	0.708	2e-52
351723149	273	syntaxin [Glycine max] gi|22597174|gb|AA	0.921	0.512	0.701	2e-51
255636806	273	unknown [Glycine max]	0.921	0.512	0.701	2e-51
225427138	274	PREDICTED: syntaxin-22 [Vitis vinifera]	0.927	0.514	0.701	4e-51
76573305	273	syntaxin-like protein [Solanum tuberosum	0.921	0.512	0.688	9e-51
449462039	274	PREDICTED: syntaxin-22-like [Cucumis sat	0.927	0.514	0.688	2e-50
449517098	253	PREDICTED: LOW QUALITY PROTEIN: syntaxin	0.927	0.557	0.688	2e-50
21595750	279	syntaxin homologue [Arabidopsis thaliana	0.940	0.512	0.707	2e-50
15237418	279	syntaxin-21 [Arabidopsis thaliana] gi|25	0.940	0.512	0.707	2e-50

>gi|225454757|ref|XP_002274100.1| PREDICTED: syntaxin-22 [Vitis vinifera] gi|297737303|emb|CBI26504.3| unnamed protein product [Vitis vinifera]

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 108/151 (71%), Positives = 124/151 (82%), Gaps = 6/151 (3%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSF+DLE G   P Q+P   A +++++       D SQAVAA +F+INTAVS+FYRLVNS
Sbjct: 1   MSFEDLEWGRTRPGQSPLALATKRREED------DSSQAVAAGVFRINTAVSAFYRLVNS 54

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           LGTPKDTL+LR+KLHKTRLHIGQLVKDTS+KLKQASE D HTEVS  ++IADAKLAKDFQ
Sbjct: 55  LGTPKDTLELREKLHKTRLHIGQLVKDTSAKLKQASENDQHTEVSASKRIADAKLAKDFQ 114

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +VLKEFQKAQRLA ERET Y PFVPKE L S
Sbjct: 115 AVLKEFQKAQRLAVERETAYTPFVPKEVLPS 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559009|ref|XP_003547794.1| PREDICTED: syntaxin-22-like [Glycine max]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/151 (70%), Positives = 121/151 (80%), Gaps = 11/151 (7%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQD+EAG       PF + +     +     QDP+QAVAA IFQINTAVS+F RLVN+
Sbjct: 1   MSFQDIEAG------RPFGSRRGLMNGK-----QDPTQAVAAGIFQINTAVSTFQRLVNT 49

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           LGTPKDTLDLR+KLHKTRLHIGQLVKDTS+KLKQAS+ DHH EV+  +KIADAKLAKDFQ
Sbjct: 50  LGTPKDTLDLREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQ 109

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +VLKEFQKAQRLAAERET Y PFVP+  L S
Sbjct: 110 AVLKEFQKAQRLAAERETAYTPFVPQAVLPS 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723149|ref|NP_001235989.1| syntaxin [Glycine max] gi|22597174|gb|AAN03474.1| syntaxin [Glycine max]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 120/151 (79%), Gaps = 11/151 (7%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQD+EAG       PF + +     +     QDP+QAVAA IFQINTAVS+F RLVN+
Sbjct: 1   MSFQDIEAG------RPFGSRRGLMNGK-----QDPTQAVAAGIFQINTAVSTFQRLVNT 49

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           LGTPKDT DLR+KLHKTRLHIGQLVKDTS+KLKQAS+ DHH EV+  +KIADAKLAKDFQ
Sbjct: 50  LGTPKDTPDLREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQ 109

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +VLKEFQKAQRLAAERET Y PFVP+  L S
Sbjct: 110 AVLKEFQKAQRLAAERETAYTPFVPQAVLPS 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636806|gb|ACU18736.1| unknown [Glycine max]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 121/151 (80%), Gaps = 11/151 (7%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQD+EAG       PF++ +     +     QDP+QAVAA IFQINTAVS+F RLVN+
Sbjct: 1   MSFQDIEAG------RPFSSRRGLMNGK-----QDPTQAVAAGIFQINTAVSTFQRLVNT 49

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           LGTPKDT DLR+KLHKTRLHIGQLVKDTS+KLKQAS+ DHH EV+  +KIADAKLAKDFQ
Sbjct: 50  LGTPKDTPDLREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQ 109

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +VLKEFQKAQRLAAERET Y PFVP+  L S
Sbjct: 110 AVLKEFQKAQRLAAERETAYTPFVPQAVLPS 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427138|ref|XP_002278649.1| PREDICTED: syntaxin-22 [Vitis vinifera] gi|147791633|emb|CAN75135.1| hypothetical protein VITISV_018887 [Vitis vinifera] gi|297742058|emb|CBI33845.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 120/151 (79%), Gaps = 10/151 (6%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQDLE+G       P   ++R       +  QDP+QAVA+ IFQINTAVS+F RLVN+
Sbjct: 1   MSFQDLESG------RPLAQSRRDYI----NAKQDPTQAVASGIFQINTAVSTFQRLVNT 50

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           LGTPKDT +LR+KLHKTRLHIGQLVKDTS+KLKQASE DHH EVS  +KIADAKLAKDFQ
Sbjct: 51  LGTPKDTSELREKLHKTRLHIGQLVKDTSAKLKQASETDHHAEVSASKKIADAKLAKDFQ 110

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +VLKEFQKAQRLAAERET Y PFVP+  L S
Sbjct: 111 AVLKEFQKAQRLAAERETAYTPFVPQSVLPS 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76573305|gb|ABA46757.1| syntaxin-like protein [Solanum tuberosum]

 Score =  204 bits (519), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 118/151 (78%), Gaps = 11/151 (7%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQDLEAG  + P+  +   K           QDP+QAVA+ IFQINTAVS+F RLVN+
Sbjct: 1   MSFQDLEAGRPLGPRRGYMNGK-----------QDPTQAVASGIFQINTAVSTFQRLVNT 49

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           LGTPKDT +LR+KLHKTR+HIGQLVKDTS+KLKQASE DH  EVS  +KI DAKLAKDFQ
Sbjct: 50  LGTPKDTPELREKLHKTRVHIGQLVKDTSAKLKQASETDHRVEVSASKKITDAKLAKDFQ 109

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +VLKEFQKAQRLAAERET Y PFVP+  L S
Sbjct: 110 AVLKEFQKAQRLAAERETAYTPFVPQAVLPS 140

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462039|ref|XP_004148749.1| PREDICTED: syntaxin-22-like [Cucumis sativus]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 122/151 (80%), Gaps = 10/151 (6%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQD+EAG       PF +++R       +  QDP+QAVA+ IFQINTAV++F RLVN+
Sbjct: 1   MSFQDIEAG------RPFASSRRDLI----NGKQDPTQAVASGIFQINTAVATFQRLVNT 50

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           LGTPKDT +LR+KLHKTRLHIGQLVKDTS+KLKQAS+ DHH EV+  +KIADAKLAKDFQ
Sbjct: 51  LGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQ 110

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +VLKEFQKAQRLAAERET Y+PFVP   L S
Sbjct: 111 AVLKEFQKAQRLAAERETAYSPFVPPTVLPS 141

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517098|ref|XP_004165583.1| PREDICTED: LOW QUALITY PROTEIN: syntaxin-22-like [Cucumis sativus]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 122/151 (80%), Gaps = 10/151 (6%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQD+EAG       PF +++R       +  QDP+QAVA+ IFQINTAV++F RLVN+
Sbjct: 1   MSFQDIEAG------RPFASSRRDLI----NGKQDPTQAVASGIFQINTAVATFQRLVNT 50

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           LGTPKDT +LR+KLHKTRLHIGQLVKDTS+KLKQAS+ DHH EV+  +KIADAKLAKDFQ
Sbjct: 51  LGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQ 110

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
           +VLKEFQKAQRLAAERET Y+PFVP   L S
Sbjct: 111 AVLKEFQKAQRLAAERETAYSPFVPPTVLPS 141

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21595750|gb|AAM66128.1| syntaxin homologue [Arabidopsis thaliana]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/147 (70%), Positives = 116/147 (78%), Gaps = 4/147 (2%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQDLEAG R P  N F   +    QQ  S   DPSQ VAA IF+I+TAV+SF+RLVNS
Sbjct: 1   MSFQDLEAGTRSPTPNRFTGGR----QQRPSSRGDPSQEVAAGIFRISTAVNSFFRLVNS 56

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           +GTPKDTL+LRDKL KTRL I +LVK+TS+KLK+ASEAD H   S I+KIADAKLAKDFQ
Sbjct: 57  IGTPKDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQ 116

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKE 147
           SVLKEFQKAQRLAAERE TY P V KE
Sbjct: 117 SVLKEFQKAQRLAAEREITYTPVVTKE 143

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237418|ref|NP_197185.1| syntaxin-21 [Arabidopsis thaliana] gi|2501101|sp|Q39233.1|SYP21_ARATH RecName: Full=Syntaxin-21; Short=AtSYP21; AltName: Full=PEP12 homolog; Short=AtPEP12; AltName: Full=aPEP12 gi|15724189|gb|AAL06486.1|AF411797_1 AT5g16830/F5E19_170 [Arabidopsis thaliana] gi|899122|gb|AAA87296.1| syntaxin of plants 21 [Arabidopsis thaliana] gi|9755735|emb|CAC01847.1| syntaxin homologue [Arabidopsis thaliana] gi|90962974|gb|ABE02411.1| At5g16830 [Arabidopsis thaliana] gi|332004962|gb|AED92345.1| syntaxin-21 [Arabidopsis thaliana]

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/147 (70%), Positives = 116/147 (78%), Gaps = 4/147 (2%)

Query: 1   MSFQDLEAGVRVPPQNPFNAAKRKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNS 60
           MSFQDLEAG R P  N F   +    QQ  S   DPSQ VAA IF+I+TAV+SF+RLVNS
Sbjct: 1   MSFQDLEAGTRSPAPNRFTGGR----QQRPSSRGDPSQEVAAGIFRISTAVNSFFRLVNS 56

Query: 61  LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
           +GTPKDTL+LRDKL KTRL I +LVK+TS+KLK+ASEAD H   S I+KIADAKLAKDFQ
Sbjct: 57  IGTPKDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQ 116

Query: 121 SVLKEFQKAQRLAAERETTYAPFVPKE 147
           SVLKEFQKAQRLAAERE TY P V KE
Sbjct: 117 SVLKEFQKAQRLAAEREITYTPVVTKE 143

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
TAIR|locus:2148960	279	SYP21 "syntaxin of plants 21"	0.940	0.512	0.659	7.3e-43
TAIR|locus:3356150	268	VAM3 "VACUOLAR MORPHOLOGY 3" [	0.914	0.518	0.642	7.3e-43
TAIR|locus:2129406	262	SYP23 "syntaxin of plants 23"	0.947	0.549	0.635	1.6e-40
TAIR|locus:2028336	416	ATSYP24 [Arabidopsis thaliana	0.506	0.185	0.649	3.2e-21
RGD|619747	261	Stx7 "syntaxin 7" [Rattus norv	0.723	0.421	0.345	1.2e-10
UNIPROTKB|Q3ZBT5	261	STX7 "Syntaxin-7" [Bos taurus	0.723	0.421	0.336	3.6e-10
UNIPROTKB|Q5ZMP2	258	STX7 "Uncharacterized protein"	0.717	0.422	0.327	4.5e-10
UNIPROTKB|F1S3P8	261	STX7 "Uncharacterized protein"	0.723	0.421	0.336	4.7e-10
MGI|MGI:1858210	261	Stx7 "syntaxin 7" [Mus musculu	0.723	0.421	0.345	4.7e-10
UNIPROTKB|O15400	261	STX7 "Syntaxin-7" [Homo sapien	0.723	0.421	0.336	6.1e-10

TAIR|locus:2148960 SYP21 "syntaxin of plants 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 97/147 (65%), Positives = 111/147 (75%)

Query:     1 MSFQDLEAGVRVPPQNPFNAAKRKXXXXXXXXXXXXXXAVAAAIFQINTAVSSFYRLVNS 60
             MSFQDLEAG R P  N F   +++               VAA IF+I+TAV+SF+RLVNS
Sbjct:     1 MSFQDLEAGTRSPAPNRFTGGRQQRPSSRGDPSQE----VAAGIFRISTAVNSFFRLVNS 56

Query:    61 LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
             +GTPKDTL+LRDKL KTRL I +LVK+TS+KLK+ASEAD H   S I+KIADAKLAKDFQ
Sbjct:    57 IGTPKDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQ 116

Query:   121 SVLKEFQKAQRLAAERETTYAPFVPKE 147
             SVLKEFQKAQRLAAERE TY P V KE
Sbjct:   117 SVLKEFQKAQRLAAEREITYTPVVTKE 143

GO:0005484 "SNAP receptor activity" evidence=IEA;IMP;IDA;TAS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0006896 "Golgi to vacuole transport" evidence=TAS

GO:0005770 "late endosome" evidence=IDA;TAS

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0030140 "trans-Golgi network transport vesicle" evidence=IDA;TAS

GO:0016020 "membrane" evidence=IDA

GO:0045324 "late endosome to vacuole transport" evidence=IMP

GO:0006623 "protein targeting to vacuole" evidence=RCA;IDA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:3356150 VAM3 "VACUOLAR MORPHOLOGY 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 97/151 (64%), Positives = 115/151 (76%)

Query:     1 MSFQDLEAGVRVPPQNPFNAAKRKXXXXXXXXXXXXXXAVAAAIFQINTAVSSFYRLVNS 60
             MSFQDLE+G R      FN  ++               AVA+ IFQINT VS+F RLVN+
Sbjct:     1 MSFQDLESG-RGRSTRKFNGGRQDSTQ-----------AVASGIFQINTGVSTFQRLVNT 48

Query:    61 LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
             LGTPKDT +LR+KLHKTRLHIGQLVKDTS+KLK+ASE DH + V+P +KIADAKLA+DFQ
Sbjct:    49 LGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQ 108

Query:   121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
             +VLKEFQKAQ+ AAERETTY PFVP+ +L S
Sbjct:   109 AVLKEFQKAQQTAAERETTYTPFVPQSALPS 139

GO:0005484 "SNAP receptor activity" evidence=IEA;TAS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA

GO:0005770 "late endosome" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0030140 "trans-Golgi network transport vesicle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009660 "amyloplast organization" evidence=IMP

GO:0005773 "vacuole" evidence=IDA

GO:0010118 "stomatal movement" evidence=IMP

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=IGI;RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

GO:0009959 "negative gravitropism" evidence=IMP

TAIR|locus:2129406 SYP23 "syntaxin of plants 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 96/151 (63%), Positives = 111/151 (73%)

Query:     1 MSFQDLEAGVRVPPQNPFNAAKRKXXXXXXXXXXXXXXAVAAAIFQINTAVSSFYRLVNS 60
             MSFQDLEAG     +    A+ R                VA+ IFQINT+VS+F+RLVN+
Sbjct:     1 MSFQDLEAG-----RGRSLASSRNINGGGSRQDTTQD--VASGIFQINTSVSTFHRLVNT 53

Query:    61 LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQ 120
             LGTPKDT +LR+KLHKTRL+IGQLVKDTS+KLK+ASE DH   V+  +KI DAKLAKDFQ
Sbjct:    54 LGTPKDTPELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRGVNQKKKIVDAKLAKDFQ 113

Query:   121 SVLKEFQKAQRLAAERETTYAPFVPKESLSS 151
             +VLKEFQKAQRLAAERET YAP V K SL S
Sbjct:   114 AVLKEFQKAQRLAAERETVYAPLVHKPSLPS 144

GO:0005484 "SNAP receptor activity" evidence=IEA;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2028336 ATSYP24 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 3.2e-21, P = 3.2e-21
 Identities = 50/77 (64%), Positives = 60/77 (77%)

Query:    75 HKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAA 134
             HK  L IGQLVKDTS+ L++ASE DH  +V+  +KIADAKLAKDF++ LKEFQKAQ +  
Sbjct:   154 HKKMLLIGQLVKDTSANLREASETDHRRDVAQSKKIADAKLAKDFEAALKEFQKAQHITV 213

Query:   135 ERETTYAPFVPKESLSS 151
             ERET+Y PF PK S SS
Sbjct:   214 ERETSYIPFDPKGSFSS 230

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=ISS;RCA

GO:0016021 "integral to membrane" evidence=TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

RGD|619747 Stx7 "syntaxin 7" [Rattus norvegicus (taxid:10116)]

 Score = 151 (58.2 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 39/113 (34%), Positives = 58/113 (51%)

Query:    40 VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99
             +++ I +I    +   R +N LGTP+DT +LR +L + + +  QL K+T   +K+     
Sbjct:    18 ISSNIQKITQCSAEIQRTLNQLGTPQDTPELRQQLQQEQQYTNQLAKETDKYIKEFGFLP 77

Query:   100 HHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSR 152
                     RKI   +L  +F + L  FQK QR AAERE     FV +   SSR
Sbjct:    78 TTPSEQRQRKIQKDRLVAEFTTALTNFQKVQRQAAEREKE---FVARVRASSR 127

GO:0000149 "SNARE binding" evidence=IPI

GO:0005484 "SNAP receptor activity" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005765 "lysosomal membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IBA

GO:0006906 "vesicle fusion" evidence=IDA

GO:0008333 "endosome to lysosome transport" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0031201 "SNARE complex" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IDA

GO:0032403 "protein complex binding" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

UNIPROTKB|Q3ZBT5 STX7 "Syntaxin-7" [Bos taurus (taxid:9913)]

 Score = 147 (56.8 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 38/113 (33%), Positives = 58/113 (51%)

Query:    40 VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99
             +++ I +I    +   R +N LGTP+D+ +LR +L + + +  QL K+T   +K+     
Sbjct:    18 ISSNIQKITQCSAEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEFGSLP 77

Query:   100 HHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSR 152
                     RKI   +L  +F + L  FQK QR AAERE     FV +   SSR
Sbjct:    78 TTPSDQRQRKIQKDRLVAEFTASLTNFQKVQRQAAEREKE---FVARVRASSR 127

GO:0031201 "SNARE complex" evidence=IBA

GO:0016079 "synaptic vesicle exocytosis" evidence=IBA

GO:0006886 "intracellular protein transport" evidence=IBA

GO:0005484 "SNAP receptor activity" evidence=IBA

GO:0000149 "SNARE binding" evidence=IBA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5ZMP2 STX7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 146 (56.5 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 37/113 (32%), Positives = 60/113 (53%)

Query:    40 VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99
             + + I +I    +   R++N LGTP+DT +LR +L + + +  QL K+T   +K+     
Sbjct:    17 ITSNIQKITQCSAEIQRILNQLGTPQDTHELRQQLQQKQQYTNQLAKETDKYIKEFGSLP 76

Query:   100 HHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSR 152
               +E    +KI   +L  +F + L  FQ+ QR AAE+E     FV +   SSR
Sbjct:    77 ATSEQRQ-KKIQKDRLVGEFTTALTNFQRLQRQAAEKEKD---FVARVRASSR 125

GO:0000149 "SNARE binding" evidence=IBA

GO:0005484 "SNAP receptor activity" evidence=IBA

GO:0006886 "intracellular protein transport" evidence=IBA

GO:0016079 "synaptic vesicle exocytosis" evidence=IBA

GO:0031201 "SNARE complex" evidence=IBA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|F1S3P8 STX7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 146 (56.5 bits), Expect = 4.7e-10, P = 4.7e-10
 Identities = 38/113 (33%), Positives = 57/113 (50%)

Query:    40 VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99
             +++ I +I        R +N LGTP+DT +LR +L + + +  QL K+T   +K+     
Sbjct:    18 ISSNIQKITQCSVEIQRTLNQLGTPQDTPELRQQLQQKQQYTNQLAKETDKYIKEFGSLP 77

Query:   100 HHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSR 152
                     RKI   +L  +F + L  FQK QR AAE+E     FV +   SSR
Sbjct:    78 TTPSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEKEKE---FVARVRASSR 127

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

MGI|MGI:1858210 Stx7 "syntaxin 7" [Mus musculus (taxid:10090)]

 Score = 146 (56.5 bits), Expect = 4.7e-10, P = 4.7e-10
 Identities = 39/113 (34%), Positives = 57/113 (50%)

Query:    40 VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99
             +++ I +I        R +N LGTP+D+ +LR  L + + +  QL K+T   +K+     
Sbjct:    18 ISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQLLQQKQQYTNQLAKETDKYIKEFGSLP 77

Query:   100 HHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSR 152
                     RKI   +L  +F + L  FQKAQR AAERE     FV +   SSR
Sbjct:    78 TTPSEQRQRKIQKDRLVAEFTTSLTNFQKAQRQAAEREKE---FVARVRASSR 127

GO:0000149 "SNARE binding" evidence=ISO;IBA

GO:0005484 "SNAP receptor activity" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005768 "endosome" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=IBA

GO:0006906 "vesicle fusion" evidence=ISO

GO:0008333 "endosome to lysosome transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=IBA

GO:0016192 "vesicle-mediated transport" evidence=ISO

GO:0031201 "SNARE complex" evidence=ISO;IBA

GO:0031902 "late endosome membrane" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

UNIPROTKB|O15400 STX7 "Syntaxin-7" [Homo sapiens (taxid:9606)]

 Score = 145 (56.1 bits), Expect = 6.1e-10, P = 6.1e-10
 Identities = 38/113 (33%), Positives = 57/113 (50%)

Query:    40 VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99
             +++ I +I        R +N LGTP+D+ +LR +L + + +  QL K+T   +K+     
Sbjct:    18 ISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEFGSLP 77

Query:   100 HHTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKESLSSR 152
                     RKI   +L  +F + L  FQK QR AAERE     FV +   SSR
Sbjct:    78 TTPSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEREKE---FVARVRASSR 127

GO:0016021 "integral to membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0000149 "SNARE binding" evidence=IBA

GO:0005484 "SNAP receptor activity" evidence=IBA

GO:0006886 "intracellular protein transport" evidence=IBA

GO:0016079 "synaptic vesicle exocytosis" evidence=IBA

GO:0031201 "SNARE complex" evidence=IBA

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39233	SYP21_ARATH	No assigned EC number	0.7074	0.9407	0.5125	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	152
cd00179	151	cd00179, SynN, Syntaxin N-terminus domain; syntaxi	4e-23
smart00503	117	smart00503, SynN, Syntaxin N-terminal domain	2e-18
pfam00804	103	pfam00804, Syntaxin, Syntaxin	1e-04

>gnl|CDD|238105 cd00179, SynN, Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain

 Score = 88.1 bits (219), Expect = 4e-23
 Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 34  QDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLD-LRDKLHKTRLHIGQLVKDTSSKL 92
            +  + +   I +I+  V    +L + L T  D    L+ +L      I +L K+   KL
Sbjct: 5   FEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKL 64

Query: 93  KQASEADHHTEVSP------IRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPK 146
           K+  E++   E         IRK   + L+K F  V+ EF KAQR   ER         +
Sbjct: 65  KELEESNEQNEALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLE 124

Length = 151

>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain

 Score = 75.5 bits (186), Expect = 2e-18
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 6/110 (5%)

Query: 34  QDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTL-DLRDKLHKTRLHIGQLVKDTSSKL 92
            +  + + A I +I+  V+   +L   L TP D   +LR+KL +    I +L K+  +KL
Sbjct: 7   FEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKL 66

Query: 93  KQASEADH-----HTEVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERE 137
           K+  + +       +     RK    KL K F+ V+ EFQ+ QR   ERE
Sbjct: 67  KELEKENLENRASGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYRERE 116

Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p. Length = 117

>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 34  QDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLD-LRDKLHKTRLHIGQLVKDTSSKL 92
            D  + +   I +I   +    +L   + T  D+   LR++L +    I QL +    KL
Sbjct: 6   FDEVEEIREEIQKIRQNLEELQKLHKRILTAPDSDKELREELEELTQEIKQLARAIKKKL 65

Query: 93  KQASE-------ADHHTEVSPIRKIADAKLAKDFQSVL 123
           K   +         H + V  IRK   A L+K F+ VL
Sbjct: 66  KSLQQLNKSEQGLGHSSAVDRIRKNQLANLSKKFKDVL 103

Syntaxins are the prototype family of SNARE proteins. They usually consist of three main regions - a C-terminal transmembrane region, a central SNARE domain which is characteristic of and conserved in all syntaxins (pfam05739), and an N-terminal domain that is featured in this entry. This domain varies between syntaxin isoforms; in syntaxin 1A it is found as three alpha-helices with a left-handed twist. It may fold back on the SNARE domain to allow the molecule to adopt a 'closed' configuration that prevents formation of the core fusion complex - it thus has an auto-inhibitory role. The function of syntaxins is determined by their localisation. They are involved in neuronal exocytosis, ER-Golgi transport and Golgi-endosome transport, for example. They also interact with other proteins as well as those involved in SNARE complexes. These include vesicle coat proteins, Rab GTPases, and tethering factors. Length = 103

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	152
PF14523	102	Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.	99.94
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	99.86
smart00503	117	SynN Syntaxin N-terminal domain. Three-helix domai	99.74
cd00179	151	SynN Syntaxin N-terminus domain; syntaxins are ner	99.72
PF00804	103	Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins	98.21
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	95.34
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	95.18
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	84.8
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	83.61

>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A

Probab=99.94  E-value=2.4e-26  Score=161.05  Aligned_cols=101  Identities=39%  Similarity=0.601  Sum_probs=90.1

Q ss_pred             HHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHH
Q 031806           40 VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKLAKDF  119 (152)
Q Consensus        40 Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL~~df  119 (152)
                      |+++||+||++|+.|+++++.|||++|+++||++||.++++|++|+++|+..|++|..+......++.++++.+||.+||
T Consensus         1 is~~l~~in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df   80 (102)
T PF14523_consen    1 ISSNLFKINQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDF   80 (102)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999222367889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcc
Q 031806          120 QSVLKEFQKAQRLAAERETTY  140 (152)
Q Consensus       120 ~~~l~~Fq~~Qr~~~ekek~~  140 (152)
                      +.+|++||++|+.|+++++++
T Consensus        81 ~~~l~~fq~~q~~~~~~~k~~  101 (102)
T PF14523_consen   81 KEALQEFQKAQRRYAEKEKQT  101 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999875

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=6.4e-21  Score=154.50  Aligned_cols=108  Identities=46%  Similarity=0.550  Sum_probs=104.0

Q ss_pred             CCccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHH
Q 031806           30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRK  109 (152)
Q Consensus        30 ~~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k  109 (152)
                      +.+|..+...|+.+||.|+.+|.+|.+++..|||+.|+++||++||.....++.++|+|+..|+++.++.. .+..+.+|
T Consensus        16 ~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~-~~~~~~~k   94 (269)
T KOG0811|consen   16 PFDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRL-ESDLRQLK   94 (269)
T ss_pred             CCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999987 35568999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031806          110 IADAKLAKDFQSVLKEFQKAQRLAAERET  138 (152)
Q Consensus       110 ~~~~KL~~df~~~l~~Fq~~Qr~~~ekek  138 (152)
                      ++++||++||..+|++||.+|++++++++
T Consensus        95 ~~~~kL~~ef~~~l~efq~vQrk~ae~ek  123 (269)
T KOG0811|consen   95 IQLDKLVDEFSAALKEFQKVQRKSAEREK  123 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence            99999999999999999999999999998

>smart00503 SynN Syntaxin N-terminal domain

Probab=99.74  E-value=4.2e-17  Score=115.99  Aligned_cols=108  Identities=31%  Similarity=0.437  Sum_probs=98.9

Q ss_pred             CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-----CCC
Q 031806           31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDT-LDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHH-----TEV  104 (152)
Q Consensus        31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt-~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~-----~~~  104 (152)
                      ++|...++.|..+|+.|+++|..|+++...+|++.|. +.++++|+.+...|+.++++|...|+.|......     .++
T Consensus         4 ~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~   83 (117)
T smart00503        4 DEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSAS   83 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHh
Confidence            6799999999999999999999999999999999986 6899999999999999999999999999987531     145


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031806          105 SPIRKIADAKLAKDFQSVLKEFQKAQRLAAERET  138 (152)
Q Consensus       105 ~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek  138 (152)
                      ++.++.+.++|.++|+.+|.+||.+|+.|.++.|
T Consensus        84 ~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k  117 (117)
T smart00503       84 DRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK  117 (117)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6789999999999999999999999999998864

Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p

>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain

Probab=99.72  E-value=4.9e-17  Score=120.63  Aligned_cols=113  Identities=28%  Similarity=0.364  Sum_probs=103.4

Q ss_pred             CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC------CC
Q 031806           31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKD-TLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHH------TE  103 (152)
Q Consensus        31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~D-t~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~------~~  103 (152)
                      ++|..+++.|..+|+.|+.+|..|+++...|||..| .+.+|.+|+.+...|+.+++.+...|+.|......      .+
T Consensus         2 ~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~   81 (151)
T cd00179           2 EEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSS   81 (151)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcH
Confidence            579999999999999999999999999999999998 88999999999999999999999999999986431      12


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 031806          104 VSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPF  143 (152)
Q Consensus       104 ~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~~  143 (152)
                      +.+.++.+.++|.++|+.+|++||.+|+.+.++.|..+.+
T Consensus        82 ~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~R  121 (151)
T cd00179          82 VDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQR  121 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677899999999999999999999999999999887764

>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane

Probab=98.21  E-value=2e-05  Score=53.94  Aligned_cols=93  Identities=25%  Similarity=0.314  Sum_probs=76.7

Q ss_pred             CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----c---CC
Q 031806           31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDT-LDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD----H---HT  102 (152)
Q Consensus        31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt-~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~----~---~~  102 (152)
                      |+|-..++.|...|..|..+|..|.++-..+-+..+. .+++..|..++..|+.++..+...|+.|....    .   ..
T Consensus         3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~   82 (103)
T PF00804_consen    3 PEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSS   82 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--S
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Confidence            5688899999999999999999999999888776663 37999999999999999999999999999872    1   11


Q ss_pred             CCchhHHHHHHHHHHHHHHHH
Q 031806          103 EVSPIRKIADAKLAKDFQSVL  123 (152)
Q Consensus       103 ~~~~~~k~~~~KL~~df~~~l  123 (152)
                      .+.+.++.+..-|.+.|++++
T Consensus        83 ~~~ri~~nq~~~L~~kf~~~m  103 (103)
T PF00804_consen   83 NEVRIRKNQVQALSKKFQEVM  103 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHC
Confidence            234456667777888888765

Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.34  E-value=0.68  Score=38.54  Aligned_cols=111  Identities=18%  Similarity=0.268  Sum_probs=84.8

Q ss_pred             ccccHHHHHHHHHHHHHhhHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CCC
Q 031806           32 QSQDPSQAVAAAIFQINTAVSSFYRLVN-SLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH-------HTE  103 (152)
Q Consensus        32 ef~~l~~~Is~~if~In~~vs~l~kl~~-~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~-------~~~  103 (152)
                      +|-.=++.|-..|-.+...|..|+++-. .|-++.--+.++.+|......+..+.+.+-..|+.+..-..       ..+
T Consensus        37 ~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~  116 (297)
T KOG0810|consen   37 EFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSA  116 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCc
Confidence            4666678888888888888888887543 34555556789999999999999999888888888766321       124


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 031806          104 VSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAP  142 (152)
Q Consensus       104 ~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~  142 (152)
                      +.+..+.+..=|.+-|..++..|+.+|..|-++.+..+.
T Consensus       117 ~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~  155 (297)
T KOG0810|consen  117 GLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQ  155 (297)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777778999999999999999998888665443

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=95.18  E-value=0.059  Score=44.19  Aligned_cols=106  Identities=13%  Similarity=0.102  Sum_probs=73.6

Q ss_pred             CccccHHHHHHHHHHHHHhhHHHHHHHHHhcC--CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhH
Q 031806           31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLG--TPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIR  108 (152)
Q Consensus        31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LG--T~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~  108 (152)
                      |-|......|...+..+-.++..+.+-...--  .+.|.   +.    -...+.+|.+.++.+|.+...+.......-+.
T Consensus        34 p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~f~~k---~~----k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~s  106 (283)
T COG5325          34 PTFILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDK---SE----KEDEIDELSKKVNQDLQRCEKILKTKYKNLQS  106 (283)
T ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchhh---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66778889999999999999888887444322  22222   22    12345667777777777776655322223456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 031806          109 KIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPF  143 (152)
Q Consensus       109 k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~~  143 (152)
                      .+.+.||.+|++..+..++.+|++.+.-++..+..
T Consensus       107 ~~~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~  141 (283)
T COG5325         107 SFLQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQ  141 (283)
T ss_pred             HHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHH
Confidence            67789999999999999999999988776555443

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.80  E-value=22  Score=29.72  Aligned_cols=107  Identities=15%  Similarity=0.184  Sum_probs=81.2

Q ss_pred             CCccccHHHHHHHHHHHHHhhHHHHHHHHH-h-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchh
Q 031806           30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVN-S-LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPI  107 (152)
Q Consensus        30 ~~ef~~l~~~Is~~if~In~~vs~l~kl~~-~-LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~  107 (152)
                      +|.|-..++.|...|.++-.++..|.+.-. . +-+..|..+=-+.|..+.+.+.++++.+-..|+.+.+..+.  ..+.
T Consensus        56 pP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~--~~~~  133 (305)
T KOG0809|consen   56 PPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQ--LSPS  133 (305)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CChH
Confidence            588999999999999999999888877432 2 33445555557788999999999999999999999987652  1222


Q ss_pred             HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031806          108 RKIA----DAKLAKDFQSVLKEFQKAQRLAAERET  138 (152)
Q Consensus       108 ~k~~----~~KL~~df~~~l~~Fq~~Qr~~~ekek  138 (152)
                      ....    .-=|.-++++...+|...|..|..+-+
T Consensus       134 e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~  168 (305)
T KOG0809|consen  134 ERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLR  168 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2222    233788889999999999999887743

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=83.61  E-value=11  Score=32.23  Aligned_cols=84  Identities=19%  Similarity=0.306  Sum_probs=54.8

Q ss_pred             HHHHHHhcC--CCCCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHH-HHHHHHHHHHHHH
Q 031806           54 FYRLVNSLG--TPKDTLDLRDKL---HKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAK-LAKDFQSVLKEFQ  127 (152)
Q Consensus        54 l~kl~~~LG--T~~Dt~~lR~kl---~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~K-L~~df~~~l~~Fq  127 (152)
                      ++|..-+|-  -..|..+.|.+|   +.....|.....++...|.+|..=...   .--..-.++| |...|...+++|.
T Consensus       200 vERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~---~lekI~sREk~iN~qle~l~~eYr  276 (359)
T PF10498_consen  200 VERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISK---TLEKIESREKYINNQLEPLIQEYR  276 (359)
T ss_pred             HHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHH
Confidence            555555552  356667888877   666677777888888888887763211   1123333555 7777888888888


Q ss_pred             HHHHHHHHHHhcc
Q 031806          128 KAQRLAAERETTY  140 (152)
Q Consensus       128 ~~Qr~~~ekek~~  140 (152)
                      .+|.+.++-+..+
T Consensus       277 ~~~~~ls~~~~~y  289 (359)
T PF10498_consen  277 SAQDELSEVQEKY  289 (359)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888776665443

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	152
2dnx_A	130	Solution Structure Of Rsgi Ruh-063, An N-Terminal D		1e-04

>pdb|2DNX|A Chain A, Solution Structure Of Rsgi Ruh-063, An N-Terminal Domain Of Syntaxin 12 From Human Cdna Length = 130

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 40  VAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEAD 99
            +  I +I+ A +    L++ LGT +D+  L++ L + +    QL K+T+  LK+     
Sbjct: 19  CSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLP 78
Query: 100 HHTEVSPIR--KIADAKLAKDFQSVLKEFQKAQRLAAERE 137
                S  R  ++   +L  DF + L  FQ  QR  +E+E
Sbjct: 79  LPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKE 118
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	152
2dnx_A	130	Syntaxin-12; snare, HABC domain, UP and DOWN three	1e-24
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	4e-08
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	2e-06

>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130

 Score = 91.3 bits (226), Expect = 1e-24
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 23  RKQQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIG 82
                          Q  +  I +I+ A +    L++ LGT +D+  L++ L + +    
Sbjct: 2   SSGSSGQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTN 61

Query: 83  QLVKDTSSKLKQASEADHHTEVS--PIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTY 140
           QL K+T+  LK+          S    +++   +L  DF + L  FQ  QR  +E+E   
Sbjct: 62  QLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKES 121

Query: 141 APFVPKES 148
                  S
Sbjct: 122 IARSGPSS 129

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267

 Score = 49.7 bits (118), Expect = 4e-08
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 8/112 (7%)

Query: 34  QDPSQAVAAAIFQINTAVSSFYRLVN-SLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKL 92
            +  + +   I +I   V    R  +  L +P      +++L +    I +      SKL
Sbjct: 34  FEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKL 93

Query: 93  KQASEADHHTE-------VSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERE 137
           K   ++    E          IRK   + L++ F  V+ E+   Q    ER 
Sbjct: 94  KSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERC 145

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 15/128 (11%)

Query: 25  QQQQNQSQSQDPSQAVAAAIFQINTAVSSFYRLVN---SLGTPKDTLDLRDKLHKTRLHI 81
           Q +   +   +  + +   I  I  A+    +L        + +D   L +KL  T   I
Sbjct: 38  QPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARI 97

Query: 82  GQLVKDTSSKLKQ------------ASEADHHTEVSPIRKIADAKLAKDFQSVLKEFQKA 129
             L     + LKQ              E    +    IR+   + L++ F  V+  +   
Sbjct: 98  SALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDV 157

Query: 130 QRLAAERE 137
           Q     R 
Sbjct: 158 QAENKRRY 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	152
2dnx_A	130	Syntaxin-12; snare, HABC domain, UP and DOWN three	100.0
1hs7_A	97	Syntaxin VAM3; UP-and-DOWN three-helix bundle inse	99.82
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	99.56
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	99.33
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	99.15
1s94_A	180	S-syntaxin; three helix bundle, structural plastic	98.93
1ez3_A	127	Syntaxin-1A; three helix bundle, endocytosis/exocy	98.38
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	97.12
2p7n_A	407	Pathogenicity island 1 effector protein; CVR69, st	81.85

>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=2.4e-35  Score=215.46  Aligned_cols=119  Identities=24%  Similarity=0.323  Sum_probs=112.4

Q ss_pred             CCccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--CCCchh
Q 031806           30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHH--TEVSPI  107 (152)
Q Consensus        30 ~~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~--~~~~~~  107 (152)
                      +|||++|++.|+++||+||++|++|++++++|||++|+++||++||.++++|++|+|+|+.+|++|+.|++.  ..++++
T Consensus         9 ~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~   88 (130)
T 2dnx_A            9 LRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQ   88 (130)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence            699999999999999999999999999999999999999999999999999999999999999999999731  235678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcC
Q 031806          108 RKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAPFVPKES  148 (152)
Q Consensus       108 ~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~~~~~~~  148 (152)
                      ++++++||++||+++|++||++||.+++|||+++..|++++
T Consensus        89 ~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~~~ar~~~  129 (130)
T 2dnx_A           89 QRLQKERLMNDFSAALNNFQAVQRRVSEKEKESIARSGPSS  129 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence            99999999999999999999999999999999999998765

>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=99.82  E-value=8.5e-20  Score=126.45  Aligned_cols=90  Identities=14%  Similarity=0.227  Sum_probs=80.1

Q ss_pred             CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHH
Q 031806           31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLH-KTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRK  109 (152)
Q Consensus        31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~-~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k  109 (152)
                      .||..|+..++.+|+       .|++++.+|||++|+++||++|+ .++.+|+.|.|+|+    .|..++          
T Consensus         6 ~d~~~li~t~s~niq-------~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~----~l~~l~----------   64 (97)
T 1hs7_A            6 KELSNLIETFAEQSR-------VLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIE----SNILIH----------   64 (97)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHH----HSTHHH----------
T ss_pred             ccHHHHHHHHHHHHH-------HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH----Hhcccc----------
Confidence            357778888877777       89999999999999999999999 99999999999999    444441          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 031806          110 IADAKLAKDFQSVLKEFQKAQRLAAERETTYAP  142 (152)
Q Consensus       110 ~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~  142 (152)
                       +++||++||..++++||.+||.|++|++.++.
T Consensus        65 -qkeRL~~dF~~l~~~fQ~~qr~y~ek~~e~~~   96 (97)
T 1hs7_A           65 -QNGKLSADFKNLKTKYQSLQQSYNQRKSLFPL   96 (97)
T ss_dssp             -HCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             -hhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence             58999999999999999999999999998764

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=99.56  E-value=6.7e-14  Score=106.88  Aligned_cols=109  Identities=11%  Similarity=0.115  Sum_probs=97.9

Q ss_pred             CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCC-CCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchh
Q 031806           31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGT-PKDTL--DLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPI  107 (152)
Q Consensus        31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT-~~Dt~--~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~  107 (152)
                      |+|-..++.|..+|++|+.+|..|.++...+++ +.+.+  .+|.+|+.++..|+.+++.+...|+.|..+.   ..++.
T Consensus         5 ~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~---~~~r~   81 (196)
T 1fio_A            5 VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG---IHDTN   81 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hhhhH
Confidence            579999999999999999999999999999554 44443  6999999999999999999999999999985   34688


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 031806          108 RKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAP  142 (152)
Q Consensus       108 ~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~  142 (152)
                      ++.+..+|.++|++++.+|+.+|+.|.++.|..+.
T Consensus        82 ~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~  116 (196)
T 1fio_A           82 KQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAK  116 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999876553

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=99.33  E-value=2.5e-11  Score=97.73  Aligned_cols=113  Identities=20%  Similarity=0.225  Sum_probs=99.5

Q ss_pred             CCccccHHHHHHHHHHHHHhhHHHHHHHHH-hcCCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------
Q 031806           30 QSQSQDPSQAVAAAIFQINTAVSSFYRLVN-SLGTPKDTL--DLRDKLHKTRLHIGQLVKDTSSKLKQASEADH------  100 (152)
Q Consensus        30 ~~ef~~l~~~Is~~if~In~~vs~l~kl~~-~LGT~~Dt~--~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~------  100 (152)
                      .++|..+++.|...|+.|+.+|..|.++.+ .|||+.+..  .++.+|+.++..|+.+++.+...|+.|.....      
T Consensus        43 ~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~  122 (279)
T 2xhe_B           43 MADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEG  122 (279)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            367999999999999999999999999986 589999988  89999999999999999999999999987432      


Q ss_pred             ----CCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 031806          101 ----HTE--VSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAP  142 (152)
Q Consensus       101 ----~~~--~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~  142 (152)
                          ..+  ..+.++.+..+|.++|+.++.+|+.+|+.|.++.+..+.
T Consensus       123 ~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~  170 (279)
T 2xhe_B          123 TFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVA  170 (279)
T ss_dssp             CCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                111  226788999999999999999999999999999986654

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=99.15  E-value=3e-10  Score=91.17  Aligned_cols=111  Identities=18%  Similarity=0.199  Sum_probs=95.5

Q ss_pred             CccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CC
Q 031806           31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKD-TLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH-------HT  102 (152)
Q Consensus        31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~D-t~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~-------~~  102 (152)
                      ++|-..++.|..+|..|+.+|..|+++.+.+++..+ .+.++.+|+.+...|+.+++.+...|+.|.....       +.
T Consensus        31 ~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~  110 (267)
T 1dn1_B           31 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS  110 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Confidence            789999999999999999999999999999887544 4689999999999999999999999999976421       11


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 031806          103 EVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYA  141 (152)
Q Consensus       103 ~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~  141 (152)
                      ...+.++.+...|.+.|++++.+|+.+|..|.++.+..+
T Consensus       111 ~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i  149 (267)
T 1dn1_B          111 ADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI  149 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122567889999999999999999999999999887643

>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1

Probab=98.93  E-value=2.7e-09  Score=80.63  Aligned_cols=112  Identities=16%  Similarity=0.214  Sum_probs=89.8

Q ss_pred             CccccHHHHHHHHHHHHHhhHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CC
Q 031806           31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNS-LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH-------HT  102 (152)
Q Consensus        31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~-LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~-------~~  102 (152)
                      ++|-..++.|...|..|..+|..|+++-.. |+++.+...++.+|..+...|+.+++.+...|+.|.....       ..
T Consensus        39 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s  118 (180)
T 1s94_A           39 EEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSS  118 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Confidence            358888999999999999999999998877 8988888899999999999999999999999999986421       11


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 031806          103 EVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTYAP  142 (152)
Q Consensus       103 ~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~  142 (152)
                      ...+.++.+...|.+.|..++.+||.+|..|.++.|..+.
T Consensus       119 ~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~  158 (180)
T 1s94_A          119 ADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIK  158 (180)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2335678889999999999999999999999888776654

>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*

Probab=98.38  E-value=1e-05  Score=57.23  Aligned_cols=110  Identities=20%  Similarity=0.241  Sum_probs=90.8

Q ss_pred             CccccHHHHHHHHHHHHHhhHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CC
Q 031806           31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNS-LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH-------HT  102 (152)
Q Consensus        31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~-LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~-------~~  102 (152)
                      ++|-.-++.|-..|..|..+|..|.++-.. |.++.....++.+|..+...|+.+++.+-..|+.|..-..       ..
T Consensus         8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s   87 (127)
T 1ez3_A            8 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS   87 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence            468888999999999999999999886655 5666666789999999999999999999999999876321       11


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031806          103 EVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTY  140 (152)
Q Consensus       103 ~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~  140 (152)
                      ...+.++-+..-|.+-|.+++.+|+.+|..|-++-+.-
T Consensus        88 ~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~r  125 (127)
T 1ez3_A           88 ADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR  125 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22356778888999999999999999999998887654

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=97.12  E-value=0.0073  Score=46.58  Aligned_cols=107  Identities=21%  Similarity=0.261  Sum_probs=85.1

Q ss_pred             CccccHHHHHHHHHHHHHhhHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-------C
Q 031806           31 SQSQDPSQAVAAAIFQINTAVSSFYRLVNS-LGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHH-------T  102 (152)
Q Consensus        31 ~ef~~l~~~Is~~if~In~~vs~l~kl~~~-LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~-------~  102 (152)
                      .+|-.-++.|...|..|..+|..|.++... +.++.+.......+..+...++.++..+...++.|..+...       .
T Consensus        43 ~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~~~  122 (279)
T 3c98_B           43 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS  122 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccch
Confidence            567778899999999999999999987665 67888888999999999999999999988888777665321       1


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031806          103 EVSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERE  137 (152)
Q Consensus       103 ~~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~eke  137 (152)
                      .+-+...-+...|...|.....+|...|+.+.+.-
T Consensus       123 ~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vv  157 (279)
T 3c98_B          123 ADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERC  157 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11223445667799999999999999999887543

>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum}

Probab=81.85  E-value=6.3  Score=32.94  Aligned_cols=73  Identities=15%  Similarity=0.097  Sum_probs=48.8

Q ss_pred             ccHHHHHHHHHHHHHhh-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHH
Q 031806           34 QDPSQAVAAAIFQINTA-VSSFYRLVNSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIAD  112 (152)
Q Consensus        34 ~~l~~~Is~~if~In~~-vs~l~kl~~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~  112 (152)
                      ..|+..|+..|-.|+.+ +--+.                    ++..+-.+.++++++.|.+++.|...-......++..
T Consensus       179 aeLw~~Isd~I~nIksdYldvYa--------------------~IvK~YTdyyQdfNeaLSklSdyIsAGkDGNkIkFd~  238 (407)
T 2p7n_A          179 SDLWDMISDQIGKIKDNYLGVYE--------------------NVVGQYTDFYKAFSDILSQMANWIKPGGDGNKVKLNV  238 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHH--------------------HHHHHHHHHHHHHHHHHHHHGGGCC---------CCH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeeeecH
Confidence            44566666666666655 33333                    3555678889999999999999886322333688888


Q ss_pred             HHHHHHHHHHHHHH
Q 031806          113 AKLAKDFQSVLKEF  126 (152)
Q Consensus       113 ~KL~~df~~~l~~F  126 (152)
                      .++.++|...+..|
T Consensus       239 ~sfk~al~kl~~KY  252 (407)
T 2p7n_A          239 DALKAALEKLKKDF  252 (407)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998888

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	152
d1fioa_	196	Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.15
d1hs7a_	97	Vam3p N-terminal domain {Baker's yeast (Saccharomy	98.46
d1ez3a_	124	Syntaxin 1A N-terminal domain {Rat (Rattus norvegi	98.26

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=1.9e-10  Score=84.35  Aligned_cols=108  Identities=11%  Similarity=0.113  Sum_probs=96.0

Q ss_pred             ccccHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchhH
Q 031806           32 QSQDPSQAVAAAIFQINTAVSSFYRLVNSLGTPKDT---LDLRDKLHKTRLHIGQLVKDTSSKLKQASEADHHTEVSPIR  108 (152)
Q Consensus        32 ef~~l~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt---~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~  108 (152)
                      +|-..++.|...|+.|+.+|..|.++...+++..+.   ..++.+|+.+...++.+++.+...++.+....   +.++.+
T Consensus         6 ~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~---~~~~~~   82 (196)
T d1fioa_           6 GFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG---IHDTNK   82 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cchHHH
Confidence            588889999999999999999999999998877554   56899999999999999999999998887754   457888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 031806          109 KIADAKLAKDFQSVLKEFQKAQRLAAERETTYAP  142 (152)
Q Consensus       109 k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~~~  142 (152)
                      +.+..+|.++|..++..|+.+|..|.++.+..+.
T Consensus        83 ~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~  116 (196)
T d1fioa_          83 QAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAK  116 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999877654

>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vam3p N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=1.9e-06  Score=56.77  Aligned_cols=87  Identities=15%  Similarity=0.234  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHH
Q 031806           37 SQAVAAAIFQINTAVSSFYRLVNSLGTPKDTLDLRDKLH-KTRLHIGQLVKDTSSKLKQASEADHHTEVSPIRKIADAKL  115 (152)
Q Consensus        37 ~~~Is~~if~In~~vs~l~kl~~~LGT~~Dt~~lR~kl~-~~~~~t~~l~k~t~~~lk~L~~~~~~~~~~~~~k~~~~KL  115 (152)
                      +..++.-|-.+-.++.-|++-+..+||.+|...||.+|. +++-.|..+.       +++...+        ..-..+|.
T Consensus         5 ~~ev~~ll~tL~~~i~lLkk~~~kiGT~rD~~~LR~kIetelIP~~~~~~-------~~i~~~~--------~l~~~dK~   69 (97)
T d1hs7a_           5 TKELSNLIETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVR-------DKIESNI--------LIHQNGKL   69 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHH-------HHHHHST--------HHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHhhhhhHHHHH-------HHHHhcc--------CcccCchH
Confidence            456788888999999999999999999999999999986 5665555444       3444422        12235899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 031806          116 AKDFQSVLKEFQKAQRLAAERET  138 (152)
Q Consensus       116 ~~df~~~l~~Fq~~Qr~~~ekek  138 (152)
                      ++||+..-.+|+.++..|..++-
T Consensus        70 ~~DF~~L~~~l~~l~~~Y~~Rk~   92 (97)
T d1hs7a_          70 SADFKNLKTKYQSLQQSYNQRKS   92 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999987754

>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 1A N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.26  E-value=1.2e-05  Score=55.16  Aligned_cols=109  Identities=20%  Similarity=0.230  Sum_probs=87.9

Q ss_pred             ccccHHHHHHHHHHHHHhhHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CCC
Q 031806           32 QSQDPSQAVAAAIFQINTAVSSFYRLV-NSLGTPKDTLDLRDKLHKTRLHIGQLVKDTSSKLKQASEADH-------HTE  103 (152)
Q Consensus        32 ef~~l~~~Is~~if~In~~vs~l~kl~-~~LGT~~Dt~~lR~kl~~~~~~t~~l~k~t~~~lk~L~~~~~-------~~~  103 (152)
                      +|-.=++.|-..|..|..+|..|..+- ..|.++.-.+.++..|..+...+....+.+-..|+.|..-..       ..+
T Consensus         7 ~Ff~eV~~Ir~~I~~i~~~v~~i~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~   86 (124)
T d1ez3a_           7 EFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSA   86 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCH
Confidence            466678999999999999999998863 445666666789999999999999999999999988855321       113


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031806          104 VSPIRKIADAKLAKDFQSVLKEFQKAQRLAAERETTY  140 (152)
Q Consensus       104 ~~~~~k~~~~KL~~df~~~l~~Fq~~Qr~~~ekek~~  140 (152)
                      ..+.++-+..-|.+.|.+++.+||.+|..|-++-+..
T Consensus        87 ~~Rir~~q~~~L~~kf~e~m~~yq~~q~~yr~~~k~r  123 (124)
T d1ez3a_          87 DLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR  123 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3456788888999999999999999999998876643