Citrus Sinensis ID: 031809

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE
Secondary Structure (PSIPRED)
ccccccHHHcccccccccccccccEEcccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHcccccccccEEcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccEEEccccEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccccccccccHHHHHHHccccccccEEEcEEcccc
Coil and Loop (DISEMBL)
mgsrgllllkgaapkhhifnntkgsifsskmptryyyydydynnrtrncsttttrssleppdvprlaqtarisltpheveefaPKIRQVIDWFgqlqdvdldsvdpalradsetgylredipkTFKNRESMiaavpsydepyikvpkvlnke
Flexible Loop (DISEMBL)
MGSRGLLLLkgaapkhhifnntkgsifsskmptRYYYYDYDYNNRTRNCSTtttrssleppdvpRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPAlradsetgylredipktfkNRESMIaavpsydepyikvpkvlnke
Low Complexity Region (SEG)
MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPtryyyydydynnrtrncsttttrssLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE
Disordered region (IsUnstruct)
*****LLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRN***********************ISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPAL*******YL**************IAAVPSYD*PYI*********
Disordered Region (DISOPRED)
****G*L*LKGAAPKHHIFNNTKGSI***********************************DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAAVPSYDEPYIKVPKVLN**
Disordered Region (DISEMBL)
MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCS***********DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE
Disordered Region (DISPRO)
*GSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYY******************SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAAVPSYDEPYIKVPKVLN**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	152	2.2.26 [Sep-21-2011]
D7STK2	137	Glutamyl-tRNA(Gln) amidot	yes	no	0.901	1.0	0.611	2e-45
B9RRX2	143	Glutamyl-tRNA(Gln) amidot	N/A	no	0.664	0.706	0.742	8e-39
B9INH0	141	Glutamyl-tRNA(Gln) amidot	yes	no	0.901	0.971	0.557	3e-38
F4JV80	155	Glutamyl-tRNA(Gln) amidot	yes	no	1.0	0.980	0.503	4e-35
Q7XZZ1	153	Glutamyl-tRNA(Gln) amidot	yes	no	0.625	0.620	0.718	9e-35
A2XK57	153	Glutamyl-tRNA(Gln) amidot	N/A	no	0.625	0.620	0.718	9e-35
C5WR30	146	Glutamyl-tRNA(Gln) amidot	N/A	no	0.809	0.842	0.524	4e-32
A9P2J1	181	Glutamyl-tRNA(Gln) amidot	N/A	no	0.717	0.602	0.484	2e-26
B0BZ26	96	Aspartyl/glutamyl-tRNA(As	yes	no	0.618	0.979	0.351	2e-11
B2J1S6	97	Aspartyl/glutamyl-tRNA(As	yes	no	0.578	0.907	0.363	3e-11

>sp|D7STK2|GATC_VITVI Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vitis vinifera GN=GATC PE=3 SV=1

 Score =  181 bits (458), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/152 (61%), Positives = 114/152 (75%), Gaps = 15/152 (9%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEP 60
           MGSR LLLLK    +  +F  T  S FS  +            N TR+ ST   RS+L P
Sbjct: 1   MGSRALLLLKATTAETLLF--TSKSTFSKAL----------IRNSTRSFST---RSALLP 45

Query: 61  PDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLRED 120
           PD+PRLA+TARISLTPHEVEEFAPKIRQVIDWFGQLQ VDL S++P++RAD+E   LR+D
Sbjct: 46  PDLPRLAETARISLTPHEVEEFAPKIRQVIDWFGQLQAVDLQSIEPSIRADTEGDNLRDD 105

Query: 121 IPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
            P+TF+NRE++IAA+PSY+EPY+KVPKVLNK+
Sbjct: 106 SPETFENREAIIAAIPSYEEPYLKVPKVLNKD 137

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
Vitis vinifera (taxid: 29760)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: -

>sp|B9RRX2|GATC_RICCO Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ricinus communis GN=GATC PE=3 SV=1

 Score =  159 bits (401), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 75/101 (74%), Positives = 89/101 (88%)

Query: 52  TTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAD 111
            T  SSL+PPDV RLA+TARISL  +EVEEFAPKIRQVIDWFGQLQ VDL+SV+PA+RAD
Sbjct: 43  ATNGSSLQPPDVSRLAETARISLNQNEVEEFAPKIRQVIDWFGQLQAVDLNSVEPAIRAD 102

Query: 112 SETGYLREDIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
           SE   LR+D+P+TF  RE++IAAVPSY++PY+KVPKVLNKE
Sbjct: 103 SEGENLRDDVPETFSEREAIIAAVPSYEKPYVKVPKVLNKE 143

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Ricinus communis (taxid: 3988)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|B9INH0|GATC_POPTR Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Populus trichocarpa GN=GATC PE=3 SV=1

 Score =  157 bits (396), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 105/156 (67%), Gaps = 19/156 (12%)

Query: 1   MGSRGLLLLKGAAPKHH----IFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRS 56
           MGSR +LLLKG +P  H    + N+ K S   S               R      T   S
Sbjct: 1   MGSRAVLLLKGPSPPKHSILFLLNHKKISPAPSI--------------RRFTTKATANGS 46

Query: 57  SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGY 116
           SLEPPDV RLA+TARISLTP +VEEF PKIRQVIDW   L  VDLDSV+P++RAD+E   
Sbjct: 47  SLEPPDVARLAETARISLTPQQVEEFGPKIRQVIDWHALLS-VDLDSVEPSIRADTEGDN 105

Query: 117 LREDIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
           LR D P+TF+NRE++IAAVP+Y++PY+KVPKVLNKE
Sbjct: 106 LRHDNPETFENREAIIAAVPNYEDPYVKVPKVLNKE 141

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Populus trichocarpa (taxid: 3694)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|F4JV80|GATC_ARATH Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GATC PE=2 SV=1

 Score =  146 bits (369), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 78/155 (50%), Positives = 109/155 (70%), Gaps = 3/155 (1%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDY--NNR-TRNCSTTTTRSS 57
           M +R LL +  A+P     + ++  I S    +  +YY      N+R  R+ S+ +  S 
Sbjct: 1   MATRALLAVIYASPNRCYISPSRIKIQSLTCSSSSHYYQRQSRKNHRIARSYSSDSDSSV 60

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYL 117
           L+PPDV RLAQTARISLTP E+EE   KIR+VIDWFGQLQ VD++SV+PA+RA+ + G L
Sbjct: 61  LQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDVNSVEPAIRAEMDGGNL 120

Query: 118 REDIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
           RED P+TF NR+S+ A++PS+++ Y+KVPK+LNKE
Sbjct: 121 REDAPETFDNRDSIRASIPSFEDAYLKVPKILNKE 155

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q7XZZ1|GATC_ORYSJ Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=GATC PE=2 SV=1

 Score =  145 bits (366), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 69/96 (71%), Positives = 83/96 (86%), Gaps = 1/96 (1%)

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETG-Y 116
           LEPPD+PRLA  ARISL+P E EEFAPKIRQV+DWFGQLQ VDL+SV+P+LRA +  G  
Sbjct: 58  LEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAGTAAGNS 117

Query: 117 LREDIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
           LRED P+TF NR+++I +VPSYD+PYIKVP+VLNKE
Sbjct: 118 LREDRPETFTNRDAIIESVPSYDDPYIKVPRVLNKE 153

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|A2XK57|GATC_ORYSI Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica GN=GATC PE=3 SV=1

 Score =  145 bits (366), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 69/96 (71%), Positives = 83/96 (86%), Gaps = 1/96 (1%)

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETG-Y 116
           LEPPD+PRLA  ARISL+P E EEFAPKIRQV+DWFGQLQ VDL+SV+P+LRA +  G  
Sbjct: 58  LEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAGTAAGNS 117

Query: 117 LREDIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
           LRED P+TF NR+++I +VPSYD+PYIKVP+VLNKE
Sbjct: 118 LREDRPETFTNRDAIIESVPSYDDPYIKVPRVLNKE 153

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Oryza sativa subsp. indica (taxid: 39946)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|C5WR30|GATC_SORBI Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Sorghum bicolor GN=GATC PE=3 SV=1

 Score =  136 bits (343), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/124 (52%), Positives = 87/124 (70%), Gaps = 1/124 (0%)

Query: 30  KMPTRYYYYDYDYNNRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQV 89
           + P    Y+    ++ +           LEPPD+ RLA  ARISL+P E E+F PKIRQV
Sbjct: 23  RRPAARTYWPRPLSSSSHVTPAAAGAGELEPPDLTRLANAARISLSPQEAEDFEPKIRQV 82

Query: 90  IDWFGQLQDVDLDSVDPALRADSET-GYLREDIPKTFKNRESMIAAVPSYDEPYIKVPKV 148
           +DWFGQLQ VDL+S++P+LRA +     LRED P+TF NR++++ A+PSYD+PYIKVP+V
Sbjct: 83  VDWFGQLQAVDLESIEPSLRAGTTADSSLREDKPETFDNRDAIVEAIPSYDDPYIKVPRV 142

Query: 149 LNKE 152
           LNKE
Sbjct: 143 LNKE 146

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Sorghum bicolor (taxid: 4558)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|A9P2J1|GATC_PICSI Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Picea sitchensis GN=GATC PE=2 SV=1

 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 83/126 (65%), Gaps = 17/126 (13%)

Query: 25  SIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAP 84
           S+ S   P R+Y                +  ++ E PDV +LA  ARISLTP EVE++ P
Sbjct: 67  SLISRSQPWRFY----------------SVHNNFEAPDVVQLAAKARISLTPKEVEDYGP 110

Query: 85  KIRQVIDWFGQLQDVDLDSVDPALRADSE-TGYLREDIPKTFKNRESMIAAVPSYDEPYI 143
           KI QVIDWFGQLQ V+L++V+PA+RAD++    LR D P  +++RE MIA VP+ +EP+I
Sbjct: 111 KIGQVIDWFGQLQGVNLENVEPAIRADTDKLSNLRPDEPIIYEDREEMIAGVPTLEEPFI 170

Query: 144 KVPKVL 149
           KVPK+L
Sbjct: 171 KVPKIL 176

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Picea sitchensis (taxid: 3332)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|B0BZ26|GATC_ACAM1 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Acaryochloris marina (strain MBIC 11017) GN=gatC PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 57/94 (60%)

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYL 117
           LE  +V ++A  AR+SLT  E E+F  ++  ++D+F QL ++D+  V+P  RA   +   
Sbjct: 2   LERAEVDKVAHLARLSLTDAESEQFTTQLGDILDYFEQLSELDVAEVEPTTRAIDVSNVT 61

Query: 118 REDIPKTFKNRESMIAAVPSYDEPYIKVPKVLNK 151
           R D    + +RES++A  P  ++ Y KVPK++ +
Sbjct: 62  RVDHLTPYDDRESILACAPDQEDEYFKVPKIMGE 95

Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).

Acaryochloris marina (strain MBIC 11017) (taxid: 329726)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|B2J1S6|GATC_NOSP7 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gatC PE=3 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 54/88 (61%)

Query: 63  VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIP 122
           V ++A  AR+ LTP E E+F  ++  ++D+  QL ++D+ +V P  RA   +   RED  
Sbjct: 7   VHKVANLARLELTPEEEEQFTTQLGSILDYIQQLDELDVSNVPPTTRAIDVSNITREDEL 66

Query: 123 KTFKNRESMIAAVPSYDEPYIKVPKVLN 150
           + + NRES++ + P  +  + KVPK+LN
Sbjct: 67  QPYANRESILNSAPEQEGEFFKVPKILN 94

Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
225429410	137	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.901	1.0	0.611	1e-43
449436902	145	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.947	0.993	0.614	2e-42
449502831	145	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.947	0.993	0.607	2e-41
255550886	143	Glutamyl-tRNA(Gln) amidotransferase subu	0.664	0.706	0.742	5e-37
224142842	141	predicted protein [Populus trichocarpa]	0.901	0.971	0.557	2e-36
388491928	139	unknown [Lotus japonicus]	0.881	0.964	0.542	1e-35
297802698	156	Glu-tRNA amidotransferase subunit C [Ara	1.0	0.974	0.480	8e-34
18418114	155	uncharacterized protein [Arabidopsis tha	1.0	0.980	0.503	2e-33
357119986	143	PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gl	0.907	0.965	0.5	2e-33
11078543	155	Glu-tRNA(Gln) amidotransferase subunit C	1.0	0.980	0.503	4e-33

>gi|225429410|ref|XP_002275650.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Vitis vinifera] gi|353558764|sp|D7STK2.1|GATC_VITVI RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Short=Glu-AdT subunit C; Flags: Precursor gi|296081596|emb|CBI20601.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/152 (61%), Positives = 114/152 (75%), Gaps = 15/152 (9%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEP 60
           MGSR LLLLK    +  +F  T  S FS  +            N TR+ ST   RS+L P
Sbjct: 1   MGSRALLLLKATTAETLLF--TSKSTFSKAL----------IRNSTRSFST---RSALLP 45

Query: 61  PDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLRED 120
           PD+PRLA+TARISLTPHEVEEFAPKIRQVIDWFGQLQ VDL S++P++RAD+E   LR+D
Sbjct: 46  PDLPRLAETARISLTPHEVEEFAPKIRQVIDWFGQLQAVDLQSIEPSIRADTEGDNLRDD 105

Query: 121 IPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
            P+TF+NRE++IAA+PSY+EPY+KVPKVLNK+
Sbjct: 106 SPETFENREAIIAAIPSYEEPYLKVPKVLNKD 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436902|ref|XP_004136231.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucumis sativus]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/153 (61%), Positives = 112/153 (73%), Gaps = 9/153 (5%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRS-SLE 59
           MGS+ L LLKGA+     F + K  IF S   T ++      N   RN ST +  S SL+
Sbjct: 1   MGSKALPLLKGASS----FPSLKRQIFIS---TAFHSLPVS-NISIRNSSTASGISASLQ 52

Query: 60  PPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLRE 119
           PPDVPRLAQTARISLTP + EEFAPKI QV+DWFGQLQ VDL S++P++RAD+E G  R 
Sbjct: 53  PPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGSQRN 112

Query: 120 DIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
           DIP+TF+NRE+MI AVP +DEPYIKVPKVLNKE
Sbjct: 113 DIPETFENREAMIGAVPVFDEPYIKVPKVLNKE 145

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502831|ref|XP_004161755.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucumis sativus]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/153 (60%), Positives = 111/153 (72%), Gaps = 9/153 (5%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRS-SLE 59
           MGS+ L LLKGA+     F + K  IF S   T ++      N   RN ST +  S SL+
Sbjct: 1   MGSKALPLLKGASS----FPSLKRQIFIS---TAFHSLPVS-NISIRNSSTASGISASLQ 52

Query: 60  PPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLRE 119
           PPDVPRLAQTARISLTP + EEFAPKI QV+DWFGQLQ VDL S++P++RAD+E G  R 
Sbjct: 53  PPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGSQRN 112

Query: 120 DIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
           DIP+TF+NRE+MI AVP +DEP IKVPKVLNKE
Sbjct: 113 DIPETFENREAMIGAVPVFDEPNIKVPKVLNKE 145

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550886|ref|XP_002516491.1| Glutamyl-tRNA(Gln) amidotransferase subunit C, putative [Ricinus communis] gi|353558760|sp|B9RRX2.1|GATC_RICCO RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Short=Glu-AdT subunit C; Flags: Precursor gi|223544311|gb|EEF45832.1| Glutamyl-tRNA(Gln) amidotransferase subunit C, putative [Ricinus communis]

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 75/101 (74%), Positives = 89/101 (88%)

Query: 52  TTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAD 111
            T  SSL+PPDV RLA+TARISL  +EVEEFAPKIRQVIDWFGQLQ VDL+SV+PA+RAD
Sbjct: 43  ATNGSSLQPPDVSRLAETARISLNQNEVEEFAPKIRQVIDWFGQLQAVDLNSVEPAIRAD 102

Query: 112 SETGYLREDIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
           SE   LR+D+P+TF  RE++IAAVPSY++PY+KVPKVLNKE
Sbjct: 103 SEGENLRDDVPETFSEREAIIAAVPSYEKPYVKVPKVLNKE 143

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142842|ref|XP_002324749.1| predicted protein [Populus trichocarpa] gi|353558759|sp|B9INH0.1|GATC_POPTR RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Short=Glu-AdT subunit C; Flags: Precursor gi|222866183|gb|EEF03314.1| predicted protein [Populus trichocarpa]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 105/156 (67%), Gaps = 19/156 (12%)

Query: 1   MGSRGLLLLKGAAPKHH----IFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRS 56
           MGSR +LLLKG +P  H    + N+ K S   S               R      T   S
Sbjct: 1   MGSRAVLLLKGPSPPKHSILFLLNHKKISPAPSI--------------RRFTTKATANGS 46

Query: 57  SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGY 116
           SLEPPDV RLA+TARISLTP +VEEF PKIRQVIDW   L  VDLDSV+P++RAD+E   
Sbjct: 47  SLEPPDVARLAETARISLTPQQVEEFGPKIRQVIDWHALLS-VDLDSVEPSIRADTEGDN 105

Query: 117 LREDIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
           LR D P+TF+NRE++IAAVP+Y++PY+KVPKVLNKE
Sbjct: 106 LRHDNPETFENREAIIAAVPNYEDPYVKVPKVLNKE 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491928|gb|AFK34030.1| unknown [Lotus japonicus]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 108/153 (70%), Gaps = 19/153 (12%)

Query: 1   MGS-RGLLLL--KGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSS 57
           MGS +GL+LL  KGA+   H F         SK                R+ S+TT  SS
Sbjct: 1   MGSSKGLILLSSKGASSLSHSFAKVSSVGLHSKF---------------RSFSSTTICSS 45

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYL 117
            +PPD+  LA+ A+ISLTPH+V+EFAPKI+QVI+WFGQLQ VDL SV+P+LRA+SE  YL
Sbjct: 46  TQPPDLTSLAKKAQISLTPHQVDEFAPKIQQVIEWFGQLQSVDLQSVEPSLRAESE-NYL 104

Query: 118 REDIPKTFKNRESMIAAVPSYDEPYIKVPKVLN 150
           RE+ P+TF +R++MIA+VPSY+EPYIKVP+VL+
Sbjct: 105 RENAPETFDSRDAMIASVPSYEEPYIKVPRVLS 137

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802698|ref|XP_002869233.1| Glu-tRNA amidotransferase subunit C [Arabidopsis lyrata subsp. lyrata] gi|297315069|gb|EFH45492.1| Glu-tRNA amidotransferase subunit C [Arabidopsis lyrata subsp. lyrata]

 Score =  148 bits (373), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 107/156 (68%), Gaps = 4/156 (2%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCS----TTTTRS 56
           M +R LL +  A+P     + ++  I S    +  +YY    + +    +    + +  S
Sbjct: 1   MATRALLAVISASPNRCFISPSRIKIQSLTSSSSSHYYQRRQSRKIHRIAPSYSSDSDSS 60

Query: 57  SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGY 116
            L+PPDV RLAQTARISLTP E+EE   KIR+VIDWFGQLQ VD++SV+PA+RA+ + G 
Sbjct: 61  VLQPPDVSRLAQTARISLTPDEIEECETKIRRVIDWFGQLQQVDVNSVEPAIRAEMDGGN 120

Query: 117 LREDIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
           LRED P+TF+NR+S+ A++PS++E Y+KVPK+LNKE
Sbjct: 121 LREDAPETFENRDSIRASIPSFEEAYLKVPKILNKE 156

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18418114|ref|NP_567909.1| uncharacterized protein [Arabidopsis thaliana] gi|353558740|sp|F4JV80.1|GATC_ARATH RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Short=Glu-AdT subunit C; Flags: Precursor gi|332660743|gb|AEE86143.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/155 (50%), Positives = 109/155 (70%), Gaps = 3/155 (1%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDY--NNR-TRNCSTTTTRSS 57
           M +R LL +  A+P     + ++  I S    +  +YY      N+R  R+ S+ +  S 
Sbjct: 1   MATRALLAVIYASPNRCYISPSRIKIQSLTCSSSSHYYQRQSRKNHRIARSYSSDSDSSV 60

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYL 117
           L+PPDV RLAQTARISLTP E+EE   KIR+VIDWFGQLQ VD++SV+PA+RA+ + G L
Sbjct: 61  LQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDVNSVEPAIRAEMDGGNL 120

Query: 118 REDIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
           RED P+TF NR+S+ A++PS+++ Y+KVPK+LNKE
Sbjct: 121 REDAPETFDNRDSIRASIPSFEDAYLKVPKILNKE 155

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357119986|ref|XP_003561713.1| PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C-like [Brachypodium distachyon]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/152 (50%), Positives = 100/152 (65%), Gaps = 14/152 (9%)

Query: 2   GSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEPP 61
            + G+  L+ AAP  H    T+  + SS  PTR                       LEPP
Sbjct: 5   AASGIPRLRWAAPPRHTLARTQWLLLSSS-PTRTPA------------PAAAGPGGLEPP 51

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETG-YLRED 120
           D+PRLA++ARISL+P E EEF+PKI+QV+DWFGQLQ VDL+ ++P+LRA +  G  LRED
Sbjct: 52  DLPRLAKSARISLSPEEAEEFSPKIQQVVDWFGQLQAVDLECIEPSLRAGTAAGSSLRED 111

Query: 121 IPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
            P+ F NR+++I A+PSYD+PYIKVP+VLNKE
Sbjct: 112 RPEPFANRDAIIEALPSYDDPYIKVPRVLNKE 143

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11078543|gb|AAG29097.1|AF240465_1 Glu-tRNA(Gln) amidotransferase subunit C [Arabidopsis thaliana]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 78/155 (50%), Positives = 109/155 (70%), Gaps = 3/155 (1%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDY--DYNNR-TRNCSTTTTRSS 57
           M +R LL +  A+P     + ++  I S    +  +YY      N+R  R+ S+ +  S 
Sbjct: 1   MATRALLAVIYASPNRCYISPSRIKIQSLTCSSSSHYYQRLSRRNHRIARSYSSDSDSSV 60

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYL 117
           L+PPDV RLAQTARISLTP E+EE   KIR+VIDWFGQLQ VD++SV+PA+RA+ + G L
Sbjct: 61  LQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDVNSVEPAIRAEMDGGNL 120

Query: 118 REDIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
           RED P+TF NR+S+ A++PS+++ Y+KVPK+LNKE
Sbjct: 121 REDAPETFDNRDSIRASIPSFEDAYLKVPKILNKE 155

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
TAIR|locus:505006545	155	AT4G32915 "AT4G32915" [Arabido	0.625	0.612	0.663	4.2e-31
TIGR_CMR|CHY_1101	94	CHY_1101 "glutamyl-tRNA(Gln) a	0.578	0.936	0.284	2.9e-07
TIGR_CMR|BA_0320	96	BA_0320 "glutamyl-tRNA(Gln) am	0.578	0.916	0.272	4.8e-07
TIGR_CMR|DET_1334	95	DET_1334 "glutamyl-tRNA(gln) a	0.605	0.968	0.260	6.1e-07
UNIPROTKB|Q97SE5	100	gatC "Glutamyl-tRNA(Gln) amido	0.578	0.88	0.3	2.1e-06
TIGR_CMR|GSU_3383	95	GSU_3383 "glutamyl-tRNA(Gln) a	0.578	0.926	0.272	1.1e-05
TIGR_CMR|APH_1113	106	APH_1113 "glutamyl-tRNA(Gln) a	0.578	0.830	0.258	1.5e-05
TIGR_CMR|ECH_1025	111	ECH_1025 "glutamyl-tRNA(Gln) a	0.578	0.792	0.247	2.4e-05
TIGR_CMR|CBU_1473	99	CBU_1473 "glutamyl-tRNA(Gln) a	0.625	0.959	0.231	0.00035
UNIPROTKB|P64205	99	gatC "Glutamyl-tRNA(Gln) amido	0.598	0.919	0.241	0.00093

TAIR|locus:505006545 AT4G32915 "AT4G32915" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 63/95 (66%), Positives = 82/95 (86%)

Query:    58 LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYL 117
             L+PPDV RLAQTARISLTP E+EE   KIR+VIDWFGQLQ VD++SV+PA+RA+ + G L
Sbjct:    61 LQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDVNSVEPAIRAEMDGGNL 120

Query:   118 REDIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
             RED P+TF NR+S+ A++PS+++ Y+KVPK+LNKE
Sbjct:   121 REDAPETFDNRDSIRASIPSFEDAYLKVPKILNKE 155

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006450 "regulation of translational fidelity" evidence=IEA

TIGR_CMR|CHY_1101 CHY_1101 "glutamyl-tRNA(Gln) amidotransferase, C subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 25/88 (28%), Positives = 44/88 (50%)

Query:    62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDI 121
             DV  +A  AR+ L+  E E +  ++  ++ +  QLQ++D ++V P           RED 
Sbjct:     7 DVEHVAMLARLKLSDEEKEMYTKQLNDILKYAEQLQELDTENVKPTAHVLPIKNVFREDK 66

Query:   122 PKTFKNRESMIAAVPSYDEPYIKVPKVL 149
                  + E  +A  P  +E + KVPK++
Sbjct:    67 VHQHLDPEKALANAPEREENFFKVPKII 94

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|BA_0320 BA_0320 "glutamyl-tRNA(Gln) amidotransferase, C subunit" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 24/88 (27%), Positives = 46/88 (52%)

Query:    62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDI 121
             +V  +A  AR+++T  E E+F  ++  ++ +  QL ++D   V P     +    +RED+
Sbjct:     8 NVKHVAHLARLAITDQEAEKFQKQLDAIVTFAEQLNELDTTDVKPTTHVLTMKNVMREDV 67

Query:   122 PKTFKNRESMIAAVPSYDEPYIKVPKVL 149
             P+     E ++   P + +  I+VP VL
Sbjct:    68 PEKGLPVEEVLKNAPDHKDNQIRVPAVL 95

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|DET_1334 DET_1334 "glutamyl-tRNA(gln) amidotransferase, C subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 24/92 (26%), Positives = 48/92 (52%)

Query:    58 LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYL 117
             L   DV  +A+ A++ L   E+   + ++  +++ F  LQ VD   V+P  ++      L
Sbjct:     3 LNREDVLHIARLAKLGLEEDEINRLSKELSALLEHFEVLQQVDTTGVEPTAQSTPVKSVL 62

Query:   118 REDIPKTFKNRESMIAAVPSYDEPYIKVPKVL 149
             +EDI K   +RE +++  P  +  Y+++  V+
Sbjct:    63 KEDIIKPSYDREEILSNAPRREGDYVRIRAVM 94

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

UNIPROTKB|Q97SE5 gatC "Glutamyl-tRNA(Gln) amidotransferase subunit C" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 27/90 (30%), Positives = 46/90 (51%)

Query:    62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALR-ADSETGYLRED 120
             +V  +A  +++  +  E   FA  + +++D    L +VD   V P    AD +T  LR D
Sbjct:     7 EVTHVANLSKLRFSEEETAAFATTLSKIVDMVELLGEVDTTGVAPTTTMADRKT-VLRPD 65

Query:   121 IPKTFKNRESMIAAVPSYDEPYIKVPKVLN 150
             + +   +R+ +   VP  D  YIKVP +L+
Sbjct:    66 VAEEGIDRDRLFKNVPEKDNYYIKVPAILD 95

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|GSU_3383 GSU_3383 "glutamyl-tRNA(Gln) amidotransferase, C subunit" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 24/88 (27%), Positives = 43/88 (48%)

Query:    62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDI 121
             DV  +A  AR+ LT  E + F  ++  ++ +  +L ++D D + P   A       RED 
Sbjct:     7 DVEHVATLARLELTEDEKDRFTGQLDAILAYVEKLNELDTDGIIPTSHAVPVENAFREDE 66

Query:   122 PKTFKNRESMIAAVPSYDEPYIKVPKVL 149
              +     E+ +A  P   E + +VP+V+
Sbjct:    67 VRPSIGVENALANAPDRVEGFFRVPRVI 94

GO:0006418 "tRNA aminoacylation for protein translation" evidence=ISS

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|APH_1113 APH_1113 "glutamyl-tRNA(Gln) amidotransferase, C subunit" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 23/89 (25%), Positives = 44/89 (49%)

Query:    62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGY-LRED 120
             ++ R+++  R+ +   EV+ +  ++  V+ WFG L +VD   VDP L     +   LR+D
Sbjct:    17 ELARVSKLVRLQIPEEEVDTYCRQLGDVVSWFGMLAEVDTTDVDPVLHGGVHSVLPLRQD 76

Query:   121 IPKTFKNRESMIAAVPSYDEPYIKVPKVL 149
                    R+ ++    S +  +  V KV+
Sbjct:    77 EVHEGDMRDQILRNASSTEMGFFVVKKVV 105

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|ECH_1025 ECH_1025 "glutamyl-tRNA(Gln) amidotransferase subunit C" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 22/89 (24%), Positives = 43/89 (48%)

Query:    62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGY-LRED 120
             D+ + A+  RI L   E++    ++ QV++W   + +VD   V P           LR+D
Sbjct:    22 DILQAAKLTRIKLNDEEIDYHLKELEQVLNWIQTISEVDTQDVTPMGHGGVNYALPLRKD 81

Query:   121 IPKTFKNRESMIAAVPSYDEPYIKVPKVL 149
             I      ++++++  P  +  +  VPKV+
Sbjct:    82 IINDGNIKDTVLSQSPKQEHDFFVVPKVI 110

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|CBU_1473 CBU_1473 "glutamyl-tRNA(Gln) amidotransferase, C subunit" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 22/95 (23%), Positives = 43/95 (45%)

Query:    58 LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYL 117
             L+  D+ ++A  +++ +  +E +     + +  D   ++  VD  +VDP     +ET  L
Sbjct:     4 LKSRDIDKIANLSKLIIPKNENDALLEALNKTFDLVIKMDKVDTSAVDPLAHPYNETQPL 63

Query:   118 REDIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
             RED       R+    + P  +     VP V++ E
Sbjct:    64 REDHVTESNQRDLFQKSAPQVEAGLYMVPVVIDNE 98

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

UNIPROTKB|P64205 gatC "Glutamyl-tRNA(Gln) amidotransferase subunit C" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 22/91 (24%), Positives = 41/91 (45%)

Query:    62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDI 121
             +V  LA+ AR++LT  E++ FA ++  ++    Q+Q VD+  V        +    R D 
Sbjct:     8 EVAHLARLARLALTETELDSFAGQLDAILTHVSQIQAVDVTGVQATDNPLKDVNVTRPDE 67

Query:   122 PKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
                   +  ++   P   +    VP++L  E
Sbjct:    68 TVPCLTQRQVLDQAPDAVDGRFAVPQILGDE 98


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.135   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      152       127   0.00091  102 3  11 22  0.42    31
                                                     29  0.40    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  566 (60 KB)
  Total size of DFA:  120 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.31u 0.07s 12.38t   Elapsed:  00:00:01
  Total cpu time:  12.31u 0.07s 12.38t   Elapsed:  00:00:01
  Start:  Fri May 10 01:24:53 2013   End:  Fri May 10 01:24:54 2013

GO:0005618 "cell wall" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2XK57	GATC_ORYSI	6, ., 3, ., 5, ., -	0.7187	0.625	0.6209	N/A	no
D7STK2	GATC_VITVI	6, ., 3, ., 5, ., -	0.6118	0.9013	1.0	yes	no
F4JV80	GATC_ARATH	6, ., 3, ., 5, ., -	0.5032	1.0	0.9806	yes	no
B9INH0	GATC_POPTR	6, ., 3, ., 5, ., -	0.5576	0.9013	0.9716	yes	no
Q7XZZ1	GATC_ORYSJ	6, ., 3, ., 5, ., -	0.7187	0.625	0.6209	yes	no
C5WR30	GATC_SORBI	6, ., 3, ., 5, ., -	0.5241	0.8092	0.8424	N/A	no
B9RRX2	GATC_RICCO	6, ., 3, ., 5, ., -	0.7425	0.6644	0.7062	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.5	0.691

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032138001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (137 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00020369001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (555 aa)	•				•		•		0.940
	GSVIVG00018820001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (546 aa)	•			•	•		•		0.903

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	152
COG0721	96	COG0721, GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransf	4e-17
PRK00034	95	PRK00034, gatC, aspartyl/glutamyl-tRNA amidotransf	1e-16
TIGR00135	93	TIGR00135, gatC, aspartyl/glutamyl-tRNA(Asn/Gln) a	3e-16
pfam02686	72	pfam02686, Glu-tRNAGln, Glu-tRNAGln amidotransfera	4e-15

>gnl|CDD|223793 COG0721, GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]

 Score = 71.1 bits (175), Expect = 4e-17
 Identities = 28/88 (31%), Positives = 51/88 (57%)

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDI 121
           +V  LA+ AR+ L+  E+E+FA ++  ++ +  QL +VD + V+P       +  LRED 
Sbjct: 7   EVKHLAKLARLELSEEELEKFATQLEDILGYVEQLNEVDTEGVEPTTHPLEVSNVLREDE 66

Query: 122 PKTFKNRESMIAAVPSYDEPYIKVPKVL 149
                +RE ++A  P  ++ + KVPK++
Sbjct: 67  VTEGLDREELLANAPESEDGFFKVPKII 94

Length = 96

>gnl|CDD|178810 PRK00034, gatC, aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed

 Score = 69.8 bits (172), Expect = 1e-16
 Identities = 30/95 (31%), Positives = 52/95 (54%)

Query: 56  SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETG 115
            ++   +V  LA+ AR+ L+  E+E+FA ++ +++D+  QL +VD + V+P         
Sbjct: 1   MAITREEVKHLAKLARLELSEEELEKFAGQLNKILDFVEQLNEVDTEGVEPTTHPLDMKN 60

Query: 116 YLREDIPKTFKNRESMIAAVPSYDEPYIKVPKVLN 150
            LRED+      RE  +   P  ++ Y KVPKV+ 
Sbjct: 61  VLREDVVTESLPREEALKNAPESEDGYFKVPKVIE 95

Length = 95

>gnl|CDD|129241 TIGR00135, gatC, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit

 Score = 68.9 bits (169), Expect = 3e-16
 Identities = 29/88 (32%), Positives = 53/88 (60%)

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDI 121
           +V  LA+ AR+ L+  E E FA  + +++D+  QL +VD ++V+P       +  LRED 
Sbjct: 5   EVKHLAKLARLELSEEEAESFAGDLDEILDYVEQLNEVDTENVEPMTHPLEISNVLREDE 64

Query: 122 PKTFKNRESMIAAVPSYDEPYIKVPKVL 149
           P+   +R+ ++   P  ++ +IKVPK++
Sbjct: 65  PEEPLSRDDILKNAPEKEDGFIKVPKII 92

Archaea, organelles, and many bacteria charge Gln-tRNA by first misacylating it with Glu and then amidating Glu to Gln. This small protein is part of the amidotransferase heterotrimer and appears to be important to the stability of the amidase subunit encode by gatA, but its function may not be required in every organism that expresses gatA and gatB. The seed alignment for This model does not include any eukaryotic sequence and is not guaranteed to find eukaryotic examples, although it does find some. Saccharomyces cerevisiae, which expresses the amidotransferase for mitochondrial protein translation, seems to lack a gatC ortholog. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model [Protein synthesis, tRNA aminoacylation]. Length = 93

>gnl|CDD|217186 pfam02686, Glu-tRNAGln, Glu-tRNAGln amidotransferase C subunit

 Score = 65.2 bits (160), Expect = 4e-15
 Identities = 22/72 (30%), Positives = 40/72 (55%)

Query: 74  LTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIA 133
           L+  E+E+F  ++ +++D+  QL +VD + V+P       T  LRED      +RE ++A
Sbjct: 1   LSEEELEKFTKQLNKILDYVEQLNEVDTEGVEPTSHPLDLTNVLREDEVTPSLDREEILA 60

Query: 134 AVPSYDEPYIKV 145
             P  ++ + KV
Sbjct: 61  NAPESEDGFFKV 72

This is a family of Glu-tRNAGln amidotransferase C subunits. The Glu-tRNA Gln amidotransferase enzyme itself is an important translational fidelity mechanism replacing incorrectly charged Glu-tRNAGln with the correct Gln-tRANGln via transmidation of the misacylated Glu-tRNAGln. This activity supplements the lack of glutaminyl-tRNA synthetase activity in gram-positive eubacterteria, cyanobacteria, Archaea, and organelles. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	152
TIGR00135	93	gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)	99.97
PRK00034	95	gatC aspartyl/glutamyl-tRNA amidotransferase subun	99.97
COG0721	96	GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C su	99.97
PRK12821	477	aspartyl/glutamyl-tRNA amidotransferase subunit C-	99.91
PRK12820	706	bifunctional aspartyl-tRNA synthetase/aspartyl/glu	99.89
PF02686	72	Glu-tRNAGln: Glu-tRNAGln amidotransferase C subuni	99.86
TIGR01827	73	gatC_rel Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransfer	99.65
KOG4247	175	consensus Mitochondrial DNA polymerase accessory s	99.09

>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit

Probab=99.97  E-value=1.1e-31  Score=190.66  Aligned_cols=93  Identities=30%  Similarity=0.572  Sum_probs=91.0

Q ss_pred             CChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCCCCCCCCCCCCCCCCCHHHHHhcCCC
Q 031809           58 LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAAVPS  137 (152)
Q Consensus        58 I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~~~~~~LReD~v~~~~~~e~iL~NAp~  137 (152)
                      |++++|+|||+||||+|+++|++.+.++|++|++||++|+++||+||+||+|+.+..++||+|++.++.+++.+|+|||+
T Consensus         1 i~~~~v~~lA~La~L~l~eee~~~~~~~l~~il~~~~~L~~vdt~~v~p~~~~~~~~~~lReD~~~~~~~~e~~l~nap~   80 (93)
T TIGR00135         1 ISDEEVKHLAKLARLELSEEEAESFAGDLDKILGFVEQLNEVDTENVEPMTHPLEISNVLREDEPEEPLSRDDILKNAPE   80 (93)
T ss_pred             CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCcccCccccccCCCCCCCCCCCCHHHHHhcCch
Confidence            68999999999999999999999999999999999999999999999999999988899999999999999999999999


Q ss_pred             CCCCcEEeccccc
Q 031809          138 YDEPYIKVPKVLN  150 (152)
Q Consensus       138 ~e~gyf~VPkVie  150 (152)
                      .++|||+||||||
T Consensus        81 ~~~~~f~VPkVie   93 (93)
T TIGR00135        81 KEDGFIKVPKIIE   93 (93)
T ss_pred             hcCCeEecCeecC
Confidence            9999999999986

This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.

>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed

Probab=99.97  E-value=3.1e-31  Score=188.64  Aligned_cols=95  Identities=32%  Similarity=0.562  Sum_probs=93.0

Q ss_pred             CCCChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCCCCCCCCCCCCCCCCCHHHHHhcC
Q 031809           56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAAV  135 (152)
Q Consensus        56 ~~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~~~~~~LReD~v~~~~~~e~iL~NA  135 (152)
                      |.|++++|+|||+||||+|+++|++.+.++|++|++||++|+++||++|+||+|+.+..++||+|++..+.+++++|+||
T Consensus         1 M~i~~e~i~~la~La~l~l~~ee~~~~~~~l~~il~~~~~l~~vd~~~vep~~~~~~~~~~lReD~~~~~~~~e~~l~na   80 (95)
T PRK00034          1 MAITREEVKHLAKLARLELSEEELEKFAGQLNKILDFVEQLNEVDTEGVEPTTHPLDMKNVLREDVVTESLPREEALKNA   80 (95)
T ss_pred             CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccCcccccCCCCCCCCCCCCCHHHHHhcC
Confidence            57999999999999999999999999999999999999999999999999999999889999999999999999999999


Q ss_pred             CCCCCCcEEeccccc
Q 031809          136 PSYDEPYIKVPKVLN  150 (152)
Q Consensus       136 p~~e~gyf~VPkVie  150 (152)
                      |..++|||+|||||+
T Consensus        81 p~~~~~yf~VPkvve   95 (95)
T PRK00034         81 PESEDGYFKVPKVIE   95 (95)
T ss_pred             chhcCCeEecCeecC
Confidence            999999999999986

>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=3.8e-31  Score=190.05  Aligned_cols=96  Identities=29%  Similarity=0.558  Sum_probs=93.8

Q ss_pred             CCCChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCCCCCCCCCCCCCCCCCHHHHHhcC
Q 031809           56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAAV  135 (152)
Q Consensus        56 ~~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~~~~~~LReD~v~~~~~~e~iL~NA  135 (152)
                      |+|++++|+|||+||||.|+++|.+.|..+|++|++||++|+++||+||+||+|+.+..++||+|++..++.++++|+||
T Consensus         1 ~~i~~e~v~~la~LarL~lseee~e~~~~~l~~Il~~veql~evD~~~vep~~~~~~~~~~lReD~~~~~~~~~~~l~na   80 (96)
T COG0721           1 MAIDREEVKHLAKLARLELSEEELEKFATQLEDILGYVEQLNEVDTEGVEPTTHPLEVSNVLREDEVTEGLDREELLANA   80 (96)
T ss_pred             CccCHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccCCCCCCCcCHHHHHhcC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcEEecccccC
Q 031809          136 PSYDEPYIKVPKVLNK  151 (152)
Q Consensus       136 p~~e~gyf~VPkVie~  151 (152)
                      |+.++|||+||||+++
T Consensus        81 p~~~dg~~~VPki~~~   96 (96)
T COG0721          81 PESEDGFFKVPKIIEE   96 (96)
T ss_pred             CcccCCeEEeeeeccC
Confidence            9999999999999874

>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional

Probab=99.91  E-value=1.1e-24  Score=190.37  Aligned_cols=91  Identities=19%  Similarity=0.312  Sum_probs=88.0

Q ss_pred             CCCCChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccC-CCCCCCCCCCCCCCCCHHHHHh
Q 031809           55 RSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAD-SETGYLREDIPKTFKNRESMIA  133 (152)
Q Consensus        55 ~~~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~-~~~~~LReD~v~~~~~~e~iL~  133 (152)
                      .+++++|+|+|+|+||||+++|||++++.+++++|++++|+|+++||+|||||+|+. +..++||||+|.++.++|++|+
T Consensus       386 k~~ItkEeVkKLAkLARLeLSEEElEkl~~dLn~ILdyVEkLnEVDTegVEPM~hp~e~~~nvLREDeV~~sl~rEeaLs  465 (477)
T PRK12821        386 KQQLNKDELKKLARLVMFDLDDAELEKLQVEFKDITSSFKQVEKIDTTNVKPMYAPFSNSPTPLRKDKDVVQKHQKILLK  465 (477)
T ss_pred             cccCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcCCCCCcccCcccccCCCCCCCCCCCCCHHHHHh
Confidence            367999999999999999999999999999999999999999999999999999997 5789999999999999999999


Q ss_pred             cCCCCCCCcEEe
Q 031809          134 AVPSYDEPYIKV  145 (152)
Q Consensus       134 NAp~~e~gyf~V  145 (152)
                      |||+.++|||+|
T Consensus       466 NAPesEdGfFkV  477 (477)
T PRK12821        466 NCKETLGGFVKV  477 (477)
T ss_pred             cCccccCCEEEC
Confidence            999999999997

>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional

Probab=99.89  E-value=2.6e-23  Score=191.16  Aligned_cols=109  Identities=13%  Similarity=0.200  Sum_probs=97.1

Q ss_pred             cccccccCCCCCCCCCCCChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCCCCCCCCCC
Q 031809           41 DYNNRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLRED  120 (152)
Q Consensus        41 ~~~~~~~~~ss~~~~~~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~~~~~~LReD  120 (152)
                      ++|-+.....-......=++++|+|||+||||+|+++|++.+.++|++||+||++|++||| +|+||+|+.+..++||+|
T Consensus       595 el~i~~~~~~~~~~~~~~~~~~V~~iA~LARL~l~eeE~~~~~~~L~~IL~~ve~L~evdt-~VeP~~~~~~~~~~lReD  673 (706)
T PRK12820        595 ELGLLDLGDADQLPGDAEKEDLIDHLSWVSRIGFAEAERAAIESALADAEELAAQLEDIAC-DEEPLFSPAPAANRMGEG  673 (706)
T ss_pred             HhCchhhcccccccccccchHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCCcCccccccCCCCC
Confidence            3444443333344556788999999999999999999999999999999999999999999 599999999999999999


Q ss_pred             CCCCCC---CHHHHHhcCCCCCCCcEEeccccc
Q 031809          121 IPKTFK---NRESMIAAVPSYDEPYIKVPKVLN  150 (152)
Q Consensus       121 ~v~~~~---~~e~iL~NAp~~e~gyf~VPkVie  150 (152)
                      ++.++.   +++++|+|||+.++|||+|||||+
T Consensus       674 ~v~~~~~~~~~e~~L~nAP~~edg~f~VPkIIe  706 (706)
T PRK12820        674 LEARECSFAATGEILKNAPAVKGDYFKVAGILD  706 (706)
T ss_pred             cCCCCCCccCHHHHHhcCccccCCeEecCeecC
Confidence            999997   599999999999999999999986

>PF02686 Glu-tRNAGln: Glu-tRNAGln amidotransferase C subunit; InterPro: IPR003837 Glu-tRNAGln amidotransferase is a heterotrimeric enzyme that is required for correct decoding of glutamine codons during translation

Probab=99.86  E-value=2.2e-22  Score=135.86  Aligned_cols=72  Identities=28%  Similarity=0.515  Sum_probs=52.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCCCCCCCCCCCCCCCCCHHHHHhcCCCCCCCcEEe
Q 031809           74 LTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAAVPSYDEPYIKV  145 (152)
Q Consensus        74 L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~~~~~~LReD~v~~~~~~e~iL~NAp~~e~gyf~V  145 (152)
                      |+++|++.+.++|++|++||++|+++||+||+||+|+.+..++||+|++..+.+++++|+|||.+++|||+|
T Consensus         1 l~eeE~~~~~~~l~~il~~~~~l~~vdt~~v~p~~~~~~~~~~lReD~~~~~~~~e~iL~nAp~~~~~~f~V   72 (72)
T PF02686_consen    1 LTEEELEKLTKQLNDILDYVEKLQEVDTEGVEPMYHPVEMSNPLREDEVEESLDREEILKNAPEKEDGYFVV   72 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHTTGGGS--TT----S-SS-SS--EB-S-----CTHHHHHTT-SSEETTEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccccccCCCCCCCCCCCCCHHHHHhccccccCCeeEC
Confidence            689999999999999999999999999999999999999999999999999999999999999999999998

The Glu-tRNA Gln amidotransferase enzyme is an important translational fidelity mechanism replacing incorrectly charged Glu-tRNAGln with the correct Gln-tRANGln via transmidation of the misacylated Glu-tRNAGln []. This activity supplements the lack of glutaminyl-tRNA synthetase activity in Gram-positive eubacteria, cyanobacteria, archaea, and organelles [].; GO: 0006450 regulation of translational fidelity; PDB: 2DQN_C 3IP4_C 2G5I_C 2F2A_C 2G5H_C 2DF4_C 3AL0_C 3KFU_G 3H0R_I 3H0L_U ....

>TIGR01827 gatC_rel Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase, subunit C, putative

Probab=99.65  E-value=3.1e-16  Score=107.67  Aligned_cols=62  Identities=19%  Similarity=0.404  Sum_probs=54.2

Q ss_pred             HHHHHHHH-HHHhhccCCCCCCCCccccCCCCCCCCCCCCCCCCC--HHHHHhcCCCCCCCcEEecc
Q 031809           84 PKIRQVID-WFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKN--RESMIAAVPSYDEPYIKVPK  147 (152)
Q Consensus        84 ~~l~~Il~-~~d~L~evDt~~VeP~~~~~~~~~~LReD~v~~~~~--~e~iL~NAp~~e~gyf~VPk  147 (152)
                      ++-..|+. +-++|++||  ||+||+|+.+..++||+|++..+++  ++.+|+|||..++|||+|||
T Consensus         4 ~~~~~~~~~~~e~L~evd--~VeP~~~~~~~~n~lReD~~~~s~~~~re~iL~NAP~~edg~F~Vp~   68 (73)
T TIGR01827         4 KEAEEILEEFSERLEDVD--EEEETYYISDGSNKFREDEEPRCDPEFKKKMLENAPVSDDGYVVVER   68 (73)
T ss_pred             HHHHHHHHHHHHHHHccC--CCCCcccccccccCCCCCcCCCCcchhHHHHHHcCCcccCCEEEEec
Confidence            34444443 446788889  9999999999999999999999998  99999999999999999998

This model represents a family small family related to GatC, the third subunit of an enzyme for completing the charging of tRNA(Gln) by amidating the Glu-tRNA(Gln). The few known archaea that contain a member of this family appear to produce Asn-tRNA(Asn) by an analogous amidotransferase reaction. This protein is proposed to substitute for GatC in the charging of both tRNAs.

>KOG4247 consensus Mitochondrial DNA polymerase accessory subunit [Replication, recombination and repair]

Probab=99.09  E-value=3e-10  Score=85.68  Aligned_cols=105  Identities=14%  Similarity=0.213  Sum_probs=94.5

Q ss_pred             cccccccccCCCCCCCCCCCChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCC-CCCCC
Q 031809           39 DYDYNNRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADS-ETGYL  117 (152)
Q Consensus        39 s~~~~~~~~~~ss~~~~~~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~~-~~~~L  117 (152)
                      ++.|.||++. |...+|.+|+...+.||.+|+...++.++.   ...+..-+.....|.-+|++||+||..+.+ ...+.
T Consensus        30 depydskiqe-sqlspmpqidaklinhlerlslvrfdseqa---vanlrssirvakrlelvdvegvepmhtvwedqecpt  105 (175)
T KOG4247|consen   30 DEPYDSKIQE-SQLSPMPQIDAKLINHLERLSLVRFDSEQA---VANLRSSIRVAKRLELVDVEGVEPMHTVWEDQECPT  105 (175)
T ss_pred             CCcccchhhh-hhcCCcchhhHHHHHHHHhhhheeecHHHH---HHHHHHHHhHHhheeeeeccCccchhhhcccccCCc
Confidence            6677788876 678899999999999999999999998886   788899999999999999999999988864 56778


Q ss_pred             CCCCCCCCCCHHHHHhcCCCCCCCcEEecc
Q 031809          118 REDIPKTFKNRESMIAAVPSYDEPYIKVPK  147 (152)
Q Consensus       118 ReD~v~~~~~~e~iL~NAp~~e~gyf~VPk  147 (152)
                      -||+..+.+..++++.||.-.-++||+.|.
T Consensus       106 fedveedplpieevfrnaslrfddffvtpp  135 (175)
T KOG4247|consen  106 FEDVEEDPLPIEEVFRNASLRFDDFFVTPP  135 (175)
T ss_pred             ccccccCCcCHHHHHhcccccccceeecCC
Confidence            899999999999999999999999999885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	152
3h0l_C	94	Structure Of Trna-Dependent Amidotransferase Gatcab		2e-06
2df4_C	100	Structure Of Trna-Dependent Amidotransferase Gatcab		1e-04
3al0_C	592	Crystal Structure Of The Glutamine Transamidosome F		3e-04

>pdb|3H0L|C Chain C, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 94

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 63  VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIP 122
           V ++A+ AR+ L   E+E F  ++  ++D+  QL+++D ++V+P ++   ET  +RED P
Sbjct: 7   VLKIAKLARLELKEEEIEVFQKQLSDILDFIDQLKELDTENVEPYIQEFEETP-MREDEP 65
Query: 123 KTFKNRESMIAAVPSYDEPYIKVPKVLN 150
               +RE  +   P   + +  VP+V+ 
Sbjct: 66  HPSLDREKALMNAPERKDGFFVVPRVVE 93

>pdb|2DF4|C Chain C, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 100

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDI 121
           +V  +A  AR+ ++P E EE A  +  ++D+  Q    D + V+P          LRED 
Sbjct: 8   EVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQNVLRED- 66
Query: 122 PKTFKN--RESMIAAVPSYDEPYIKVPKVLNKE 152
            K  K   +E  +      ++   KVP ++N+E
Sbjct: 67  -KAIKGIPQELALKNAKETEDGQFKVPTIMNEE 98

>pdb|3AL0|C Chain C, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 592

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 63  VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIP 122
           V  L   AR+ L+  + E      ++++D+   L +VD++ V+P      ++  LR+  P
Sbjct: 10  VLHLENLARLELSEDQRESLMKDFQEILDYVELLNEVDVEGVEPMYTPVEDSAKLRKGDP 69
Query: 123 KTFKNRESMIAAVPSYDEPYIKVPKV 148
           + F+ R+ +    P   + +IKVP +
Sbjct: 70  RFFEMRDLIKKNFPEEKDGHIKVPGI 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	152
3ip4_C	100	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase;	4e-22
3h0l_C	94	Glutamyl-tRNA(Gln) amidotransferase subunit C; mul	2e-19
3kfu_G	92	Glutamyl-tRNA(Gln) amidotransferase subunit C; ASP	3e-19

>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C Length = 100

 Score = 83.8 bits (208), Expect = 4e-22
 Identities = 24/97 (24%), Positives = 44/97 (45%)

Query: 56  SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETG 115
           + +   +V  +A  AR+ ++P E EE A  +  ++D+  Q    D + V+P         
Sbjct: 2   TKVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQN 61

Query: 116 YLREDIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152
            LRED       +E  +      ++   KVP ++N+E
Sbjct: 62  VLREDKAIKGIPQELALKNAKETEDGQFKVPTIMNEE 98

>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C* Length = 94

 Score = 76.4 bits (189), Expect = 2e-19
 Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDI 121
            V ++A+ AR+ L   E+E F  ++  ++D+  QL+++D ++V+P ++   ET  +RED 
Sbjct: 6   WVLKIAKLARLELKEEEIEVFQKQLSDILDFIDQLKELDTENVEPYIQEFEET-PMREDE 64

Query: 122 PKTFKNRESMIAAVPSYDEPYIKVPKVL 149
           P    +RE  +   P   + +  VP+V+
Sbjct: 65  PHPSLDREKALMNAPERKDGFFVVPRVV 92

>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 92

 Score = 76.1 bits (188), Expect = 3e-19
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 57  SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGY 116
            L P  + +L   A+I L+P E       +++++D+   L  V+    +         G 
Sbjct: 5   ELSPELLRKLETLAKIRLSPEEEALLLQDLKRILDFVDALPRVEEGGAEE------ALGR 58

Query: 117 LREDIPKTFKNRESMIAAVPSYDEPYIKVPKVL 149
           LRED P+    +   +A  P  ++ + +VP VL
Sbjct: 59  LREDEPRPSLPQAEALALAPEAEDGFFRVPPVL 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	152
3ip4_C	100	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase;	100.0
3h0l_C	94	Glutamyl-tRNA(Gln) amidotransferase subunit C; mul	100.0
3kfu_G	92	Glutamyl-tRNA(Gln) amidotransferase subunit C; ASP	99.97
3al0_C	592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	99.94

>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C

Probab=100.00  E-value=2.5e-35  Score=211.86  Aligned_cols=98  Identities=24%  Similarity=0.397  Sum_probs=91.4

Q ss_pred             CCCCChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCCCCCCCCCCCCCCCCCHHHHHhc
Q 031809           55 RSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAA  134 (152)
Q Consensus        55 ~~~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~~~~~~LReD~v~~~~~~e~iL~N  134 (152)
                      ||.|++++|+|||+||||+|+++|++.+.++|++||+||++|++|||+||+||+|+.+..++||+|++.++++++++|+|
T Consensus         1 Mm~i~~e~v~~iA~LArL~l~eeE~~~~~~~l~~Il~~ve~L~evDt~~VeP~~~~~~~~~~lReD~v~~~~~~e~~L~n   80 (100)
T 3ip4_C            1 MTKVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQNVLREDKAIKGIPQELALKN   80 (100)
T ss_dssp             --CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHGGGGGSCCTTCCCCSCCSCCCCCCBCSCCCCCCCHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHc
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcEEecccccCC
Q 031809          135 VPSYDEPYIKVPKVLNKE  152 (152)
Q Consensus       135 Ap~~e~gyf~VPkVie~~  152 (152)
                      ||..++|||+|||||++|
T Consensus        81 AP~~e~g~f~VPkVie~~   98 (100)
T 3ip4_C           81 AKETEDGQFKVPTIMNEE   98 (100)
T ss_dssp             CSSEETTEEEEECC----
T ss_pred             CchhcCCeEEeccccCCC
Confidence            999999999999999864

>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*

Probab=100.00  E-value=1.5e-33  Score=200.45  Aligned_cols=93  Identities=27%  Similarity=0.522  Sum_probs=90.2

Q ss_pred             CCChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCCCCCCCCCCCCCCCCCHHHHHhcCC
Q 031809           57 SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAAVP  136 (152)
Q Consensus        57 ~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~~~~~~LReD~v~~~~~~e~iL~NAp  136 (152)
                      +|++++|+|||+||||+|+++|++.+.++|++||+||++|+++||+||+||+|+.+. ++||+|++.++.+++++|+|||
T Consensus         1 ~i~~e~v~~iA~LArL~l~eee~~~~~~~l~~Il~~ve~L~evDt~~VeP~~~~~~~-~~lReD~v~~~~~~e~~L~nAP   79 (94)
T 3h0l_C            1 MVDREWVLKIAKLARLELKEEEIEVFQKQLSDILDFIDQLKELDTENVEPYIQEFEE-TPMREDEPHPSLDREKALMNAP   79 (94)
T ss_dssp             -CCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTTGGGSCCTTCCCCCCCCSS-CCCBCSCCCCCCCHHHHHTTCS
T ss_pred             CCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccCcccc-cCCCCCCCCCCCCHHHHHHcCc
Confidence            489999999999999999999999999999999999999999999999999999998 9999999999999999999999


Q ss_pred             CCCCCcEEeccccc
Q 031809          137 SYDEPYIKVPKVLN  150 (152)
Q Consensus       137 ~~e~gyf~VPkVie  150 (152)
                      ..++|||+|||||+
T Consensus        80 ~~e~g~f~VPkVie   93 (94)
T 3h0l_C           80 ERKDGFFVVPRVVE   93 (94)
T ss_dssp             SEETTEEEEECCC-
T ss_pred             hhcCCeEEcceEec
Confidence            99999999999996

>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}

Probab=99.97  E-value=8e-32  Score=190.97  Aligned_cols=89  Identities=26%  Similarity=0.488  Sum_probs=84.7

Q ss_pred             CCCChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCCCCCCCCCCCCCCCCCHHHHHhcC
Q 031809           56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAAV  135 (152)
Q Consensus        56 ~~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~~~~~~LReD~v~~~~~~e~iL~NA  135 (152)
                      |.|++++|+|||+||||+|+++|++.+.++|++||+||++|+++||+||+|      ..++||+|++.++++++++|+||
T Consensus         4 M~i~~e~V~~iA~LArL~l~eeE~~~~~~~l~~Il~~ve~L~evDt~~VeP------~~~~lReD~v~~~~~~e~~L~nA   77 (92)
T 3kfu_G            4 MELSPELLRKLETLAKIRLSPEEEALLLQDLKRILDFVDALPRVEEGGAEE------ALGRLREDEPRPSLPQAEALALA   77 (92)
T ss_dssp             -CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCC------CCCCCBCSCCCCCCCHHHHHTTC
T ss_pred             CccCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC------CcCCCCCCCCCCCCCHHHHHHcC
Confidence            789999999999999999999999999999999999999999999999999      57899999999999999999999


Q ss_pred             CCCCCCcEEeccccc
Q 031809          136 PSYDEPYIKVPKVLN  150 (152)
Q Consensus       136 p~~e~gyf~VPkVie  150 (152)
                      |..++|||+||||||
T Consensus        78 P~~e~g~f~VPkVie   92 (92)
T 3kfu_G           78 PEAEDGFFRVPPVLE   92 (92)
T ss_dssp             SSEETTEEEECCC--
T ss_pred             chhcCCeEEeceecC
Confidence            999999999999986

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}

Probab=99.94  E-value=2.1e-27  Score=213.83  Aligned_cols=97  Identities=23%  Similarity=0.401  Sum_probs=91.3

Q ss_pred             CCCCChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCCCCCCCCCCCCCCCCCHHHHHhc
Q 031809           55 RSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAA  134 (152)
Q Consensus        55 ~~~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~~~~~~LReD~v~~~~~~e~iL~N  134 (152)
                      ||.|++++|+|||+||||+|+++|++.+.++|++||+||++|++|||+||+||+|+.+..++||+|++.++++++++|+|
T Consensus         2 ~m~i~~e~v~~iA~LArL~l~eee~~~~~~~l~~Il~~ve~L~evDt~~Vep~~~~~~~~~~lReD~v~~~~~~e~~L~n   81 (592)
T 3al0_C            2 GIKVTKDLVLHLENLARLELSEDQRESLMKDFQEILDYVELLNEVDVEGVEPMYTPVEDSAKLRKGDPRFFEMRDLIKKN   81 (592)
T ss_dssp             --CCCSTHHHHHHTTTTCCCCSSSHHHHHHHHHHHHHHHTTTCSSCCSSCCCCSCCSCSCCCCBCCCCCCCTTHHHHHTT
T ss_pred             CCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcccCCCCCCcCcccccccccCCCCcCCCCCCHHHHHhc
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcEEecccccC
Q 031809          135 VPSYDEPYIKVPKVLNK  151 (152)
Q Consensus       135 Ap~~e~gyf~VPkVie~  151 (152)
                      ||+.++|||+|||||++
T Consensus        82 AP~~e~g~f~VPkVie~   98 (592)
T 3al0_C           82 FPEEKDGHIKVPGIHRG   98 (592)
T ss_dssp             CSCEETTEEEEECC---
T ss_pred             CchhhCCEEEEEEEccc
Confidence            99999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	152
d2f2ac1	92	a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C	1e-23

>d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 1280]} Length = 92

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Glu-tRNAGln amidotransferase C subunit
family: Glu-tRNAGln amidotransferase C subunit
domain: Glu-tRNAGln amidotransferase C subunit, GatC
species: Staphylococcus aureus [TaxId: 1280]

 Score = 86.3 bits (214), Expect = 1e-23
 Identities = 22/87 (25%), Positives = 38/87 (43%)

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDI 121
           +V  +A  AR+ ++P E EE A  +  ++D+  Q    D + V+P          LRED 
Sbjct: 6   EVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQNVLREDK 65

Query: 122 PKTFKNRESMIAAVPSYDEPYIKVPKV 148
                 +E  +      ++   KVP +
Sbjct: 66  AIKGIPQELALKNAKETEDGQFKVPTI 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	152
d2f2ac1	92	Glu-tRNAGln amidotransferase C subunit, GatC {Stap	99.97

>d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Glu-tRNAGln amidotransferase C subunit
family: Glu-tRNAGln amidotransferase C subunit
domain: Glu-tRNAGln amidotransferase C subunit, GatC
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.97  E-value=1.4e-31  Score=187.44  Aligned_cols=92  Identities=24%  Similarity=0.382  Sum_probs=90.3

Q ss_pred             CCChhHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCCCCCCCCCCCCCCCCCHHHHHhcCC
Q 031809           57 SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLREDIPKTFKNRESMIAAVP  136 (152)
Q Consensus        57 ~I~~E~v~~LA~LArL~L~eeE~e~~~~~l~~Il~~~d~L~evDt~~VeP~~~~~~~~~~LReD~v~~~~~~e~iL~NAp  136 (152)
                      .|++++|+|||+||||+|+++|++.+.++|++||+||++|+++||+||+||+|+.+..++||+|++.++.+++++|+|||
T Consensus         1 KIs~e~i~~lA~LarL~l~deE~~~~~~~l~~Il~~~~~L~~vDt~~vep~~~~~~~~~~lReD~~~~~~~~~~~l~naP   80 (92)
T d2f2ac1           1 KVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQNVLREDKAIKGIPQELALKNAK   80 (92)
T ss_dssp             CCCHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHHHHGGGGGSCCTTCCCCSCSSCCCCCCBCCCCCCCCCHHHHHTTCS
T ss_pred             CCCHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCCccccccccCCCCCcCCCCCCHHHHHHcCC
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEeccc
Q 031809          137 SYDEPYIKVPKV  148 (152)
Q Consensus       137 ~~e~gyf~VPkV  148 (152)
                      .+++|||+||||
T Consensus        81 ~~~~~~f~VPkV   92 (92)
T d2f2ac1          81 ETEDGQFKVPTI   92 (92)
T ss_dssp             SEETTEEEEECC
T ss_pred             cccCCeeecCCC
Confidence            999999999997