Citrus Sinensis ID: 031818

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFGESSDHEKMGTTLDGGGGMGVIAAGSGNPKAGH
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEccHHHcHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccEccccccccEEccccccccccc
Coil and Loop (DISEMBL)
mkqldevdmgmTYEELSVYGRLRKifhcgpvsmfknlcyrwgarltpsEVAEKVKHFFKYYSInrhkmtvltpsyhaesyspednrFDLRQFLYnarwpyqfRKIDELVKEldgekvpfgessdhekmgttldggggmgviaagsgnpkagh
Flexible Loop (DISEMBL)
mkqldevdmgmTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEkvpfgessdhekmGTTLDGGGGMGVIAAgsgnpkagh
Low Complexity Region (SEG)
MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFGESSDHEKmgttldggggmgviaagsgNPKAGH
Disordered region (IsUnstruct)
*********GMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKEL****************************************
Disordered Region (DISOPRED)
**QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDEL********************************************
Disordered Region (DISEMBL)
MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFGESSDHEKMGTTLDGGGGMGVIAAGSGNPKAGH
Disordered Region (DISPRO)
*******DMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGE*************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFGESSDHEKMGTTLDGGGGMGVIAAGSGNPKAGH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	152	2.2.26 [Sep-21-2011]
P38795	714	Glutamine-dependent NAD(+	yes	no	0.75	0.159	0.640	8e-40
Q5ZMA6	707	Glutamine-dependent NAD(+	yes	no	0.815	0.175	0.616	9e-40
Q54ML1	713	Glutamine-dependent NAD(+	yes	no	0.717	0.152	0.672	2e-39
Q812E8	725	Glutamine-dependent NAD(+	yes	no	0.743	0.155	0.646	5e-39
Q3ZBF0	706	Glutamine-dependent NAD(+	yes	no	0.763	0.164	0.637	8e-39
O74940	700	Putative glutamine-depend	yes	no	0.723	0.157	0.666	2e-38
Q711T7	725	Glutamine-dependent NAD(+	yes	no	0.743	0.155	0.637	2e-38
Q9VYA0	787	Probable glutamine-depend	yes	no	0.776	0.149	0.618	1e-37
Q6IA69	706	Glutamine-dependent NAD(+	yes	no	0.743	0.160	0.637	4e-37
Q4R5Y2	706	Glutamine-dependent NAD(+	N/A	no	0.743	0.160	0.628	2e-36

>sp|P38795|NADE_YEAST Glutamine-dependent NAD(+) synthetase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=QNS1 PE=1 SV=1

 Score =  162 bits (410), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 73/114 (64%), Positives = 90/114 (78%)

Query: 3   QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
           Q DE+DMGMTYEEL V+G LRK+  CGP SMF  L ++W  +LTP +++EKVK FF +Y+
Sbjct: 591 QSDEIDMGMTYEELGVFGYLRKVEKCGPYSMFLKLLHQWSPKLTPRQISEKVKRFFFFYA 650

Query: 63  INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEK 116
           INRHK TVLTPSYHAE YSPEDNRFDLR FL N R+P+  RKIDE+V++ +  K
Sbjct: 651 INRHKQTVLTPSYHAEQYSPEDNRFDLRPFLINPRFPWASRKIDEVVEQCEAHK 704

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: 1

>sp|Q5ZMA6|NADE_CHICK Glutamine-dependent NAD(+) synthetase OS=Gallus gallus GN=NADSYN1 PE=2 SV=1

 Score =  162 bits (409), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 77/125 (61%), Positives = 88/125 (70%), Gaps = 1/125 (0%)

Query: 1   MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKY 60
           + Q DE DMGMTY ELS+YG+LRKI   GP SMF  L   W    TP EVA KVKHFF+ 
Sbjct: 583 VSQTDEADMGMTYAELSIYGKLRKIAKAGPYSMFCKLINLWKEICTPREVASKVKHFFRM 642

Query: 61  YSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELD-GEKVPF 119
           YS+NRHKMT LTPSYHAE+YSP+DNRFDLR FLYN  W +QFR ID  V  L+  E +  
Sbjct: 643 YSVNRHKMTTLTPSYHAENYSPDDNRFDLRPFLYNTTWSWQFRCIDNQVSHLEKKEGISV 702

Query: 120 GESSD 124
            E +D
Sbjct: 703 AEDTD 707

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|Q54ML1|NADE_DICDI Glutamine-dependent NAD(+) synthetase OS=Dictyostelium discoideum GN=nadsyn1 PE=3 SV=1

 Score =  160 bits (406), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/110 (67%), Positives = 88/110 (80%), Gaps = 1/110 (0%)

Query: 3   QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
           Q DE+DMGMTYEELS++G+LRK+  CGPVSMF+ L   W A L PS VAEKVK FF YY+
Sbjct: 584 QSDEIDMGMTYEELSIFGKLRKVNRCGPVSMFERLVADW-AHLEPSVVAEKVKRFFYYYA 642

Query: 63  INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKEL 112
           INRHK+T LTPSYHAE YSP+DNR+D RQFLYN++W  QF  ID++V  L
Sbjct: 643 INRHKLTTLTPSYHAEGYSPDDNRYDHRQFLYNSKWDVQFETIDKIVLRL 692

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|Q812E8|NADE_RAT Glutamine-dependent NAD(+) synthetase OS=Rattus norvegicus GN=Nadsyn1 PE=2 SV=1

 Score =  159 bits (402), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 73/113 (64%), Positives = 85/113 (75%)

Query: 1   MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKY 60
           + Q+DE DMGMTY ELS++GRLRK+   GP SMF  L   W    TP +VAEKVK FF  
Sbjct: 583 VSQMDEEDMGMTYTELSIFGRLRKVAKAGPYSMFCKLLNMWKDSCTPRQVAEKVKRFFSK 642

Query: 61  YSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELD 113
           YSINRHKMT LTP+YHAE+YSP+DNRFDLR FLYN RWP+QF  ID  V +L+
Sbjct: 643 YSINRHKMTTLTPAYHAENYSPDDNRFDLRPFLYNTRWPWQFLCIDNQVVQLE 695

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|Q3ZBF0|NADE_BOVIN Glutamine-dependent NAD(+) synthetase OS=Bos taurus GN=NADSYN1 PE=2 SV=1

 Score =  159 bits (401), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 74/116 (63%), Positives = 87/116 (75%)

Query: 1   MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKY 60
           + Q DE DMGMTY ELSVYGRLRK+   GP SMF  L   W    +P +VA+KVK FF  
Sbjct: 583 VSQTDEEDMGMTYAELSVYGRLRKVAKTGPYSMFCKLLDMWRDTCSPRQVADKVKCFFSK 642

Query: 61  YSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEK 116
           YS+NRHKMT LTP+YHAESYSP+DNRFDLR FLYN RWP+QFR I+  V +L+G +
Sbjct: 643 YSMNRHKMTTLTPAYHAESYSPDDNRFDLRPFLYNTRWPWQFRCIENQVLQLEGRQ 698

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|O74940|NADE_SCHPO Putative glutamine-dependent NAD(+) synthetase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC553.02 PE=3 SV=1

 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 87/111 (78%), Gaps = 1/111 (0%)

Query: 3   QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
           Q DE DMGMTY ELSV+GRLRKI  CGP SMF  L ++WG RL+PS+VAEKVK FF YY 
Sbjct: 586 QSDEADMGMTYAELSVFGRLRKISKCGPYSMFTQLMHQWGDRLSPSQVAEKVKRFFHYYG 645

Query: 63  INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELD 113
           INRHKMT LTPSYHAE+Y  +DNR+DLRQFLY + W +Q +KID L  + +
Sbjct: 646 INRHKMTTLTPSYHAETYGVDDNRYDLRQFLYPS-WTWQNKKIDALASKFE 695

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|Q711T7|NADE_MOUSE Glutamine-dependent NAD(+) synthetase OS=Mus musculus GN=Nadsyn1 PE=2 SV=1

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 86/113 (76%)

Query: 1   MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKY 60
           + Q+DE DMGMTY ELS++GRLRK+   GP SMF  L   W    TP++VAEKVK FF  
Sbjct: 583 VSQMDEEDMGMTYAELSIFGRLRKVAKAGPYSMFCKLLNMWRDSYTPTQVAEKVKLFFSK 642

Query: 61  YSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELD 113
           YS+NRHKMT LTP+YHAE+YSP+DNRFDLR FLYN RWP+QF  ID  V +L+
Sbjct: 643 YSMNRHKMTTLTPAYHAENYSPDDNRFDLRPFLYNTRWPWQFLCIDNQVLQLE 695

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|Q9VYA0|NADE_DROME Probable glutamine-dependent NAD(+) synthetase OS=Drosophila melanogaster GN=CG9940 PE=1 SV=1

 Score =  155 bits (391), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/118 (61%), Positives = 86/118 (72%)

Query: 1   MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKY 60
           ++Q DE DMGMTY ELS +GRLRK   CGP SMF +L   W + L+P EVAEKVKHFF  
Sbjct: 584 LQQTDEADMGMTYAELSQFGRLRKQSFCGPYSMFCHLVATWKSDLSPKEVAEKVKHFFLC 643

Query: 61  YSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVP 118
           Y+INRHKMTVLTPS HAESYSP+DNRFD R FLY   W +QF+ ID+  ++L     P
Sbjct: 644 YAINRHKMTVLTPSVHAESYSPDDNRFDHRPFLYRPNWSWQFKAIDDEAEKLQPIYTP 701

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|Q6IA69|NADE_HUMAN Glutamine-dependent NAD(+) synthetase OS=Homo sapiens GN=NADSYN1 PE=1 SV=3

 Score =  153 bits (387), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 84/113 (74%)

Query: 1   MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKY 60
           + Q DE DMGMTY ELSVYG+LRK+   GP SMF  L   W    TP +VA+KVK FF  
Sbjct: 583 VSQTDEEDMGMTYAELSVYGKLRKVAKMGPYSMFCKLLGMWRHICTPRQVADKVKRFFSK 642

Query: 61  YSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELD 113
           YS+NRHKMT LTP+YHAE+YSPEDNRFDLR FLYN  WP+QFR I+  V +L+
Sbjct: 643 YSMNRHKMTTLTPAYHAENYSPEDNRFDLRPFLYNTSWPWQFRCIENQVLQLE 695

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|Q4R5Y2|NADE_MACFA Glutamine-dependent NAD(+) synthetase OS=Macaca fascicularis GN=NADSYN1 PE=2 SV=1

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 84/113 (74%)

Query: 1   MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKY 60
           + Q DE DMGMTY ELSVYG+LRK+   GP SMF  L   W    TP +VA+KVK FF  
Sbjct: 583 VSQTDEEDMGMTYAELSVYGKLRKVAKMGPYSMFCKLLGMWRHVCTPRQVADKVKWFFTK 642

Query: 61  YSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELD 113
           +S+NRHKMT LTP+YHAE+YSPEDNRFDLR FLYN  WP+QFR I+  V +L+
Sbjct: 643 HSMNRHKMTTLTPAYHAENYSPEDNRFDLRPFLYNTSWPWQFRCIENQVLQLE 695

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
224075164	730	predicted protein [Populus trichocarpa]	0.960	0.2	0.859	3e-71
356523661	731	PREDICTED: glutamine-dependent NAD(+) sy	0.967	0.201	0.865	3e-71
356513255	731	PREDICTED: glutamine-dependent NAD(+) sy	0.967	0.201	0.852	2e-70
224053749	730	predicted protein [Populus trichocarpa]	0.960	0.2	0.825	1e-68
255555661	665	glutamine-dependent NAD(+) synthetase, p	0.940	0.215	0.832	2e-68
449524932	720	PREDICTED: LOW QUALITY PROTEIN: glutamin	0.894	0.188	0.812	2e-66
449452230	720	PREDICTED: glutamine-dependent NAD(+) sy	0.894	0.188	0.812	3e-66
242048246	732	hypothetical protein SORBIDRAFT_02g00964	0.980	0.203	0.753	3e-62
414588846	732	TPA: hypothetical protein ZEAMMB73_20144	0.980	0.203	0.746	4e-62
357122994	735	PREDICTED: glutamine-dependent NAD(+) sy	0.980	0.202	0.738	5e-61

>gi|224075164|ref|XP_002304569.1| predicted protein [Populus trichocarpa] gi|222842001|gb|EEE79548.1| predicted protein [Populus trichocarpa]

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 128/149 (85%), Positives = 138/149 (92%), Gaps = 3/149 (2%)

Query: 3   QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
           QLDEVDMGMTYEELSVYGRLRKIF CGPVSMFKNLCYRWG+RL+PSEVA+KVKHFFKYYS
Sbjct: 584 QLDEVDMGMTYEELSVYGRLRKIFRCGPVSMFKNLCYRWGSRLSPSEVADKVKHFFKYYS 643

Query: 63  INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFGES 122
           INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQF KIDELVKELDG+KV FGE+
Sbjct: 644 INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFSKIDELVKELDGDKVAFGET 703

Query: 123 SDHEKMGTTLDGGGGMGVIAAGSGNPKAG 151
           SD +K   +   G GMGV+AAGSG+PK+G
Sbjct: 704 SDQDK---SRANGLGMGVVAAGSGDPKSG 729

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523661|ref|XP_003530455.1| PREDICTED: glutamine-dependent NAD(+) synthetase-like [Glycine max]

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 129/149 (86%), Positives = 133/149 (89%), Gaps = 2/149 (1%)

Query: 3   QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
           QLDEVDMGMTYEELSVYGRLRKIF CGPVSMF+NLCYRWGARLTPS+VAEKVKHFFKYYS
Sbjct: 584 QLDEVDMGMTYEELSVYGRLRKIFRCGPVSMFQNLCYRWGARLTPSQVAEKVKHFFKYYS 643

Query: 63  INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFGES 122
           INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELV ELD + V   +S
Sbjct: 644 INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVSELDVKDVK--DS 701

Query: 123 SDHEKMGTTLDGGGGMGVIAAGSGNPKAG 151
            DHE M  T DG GGMGV AAGSGNP  G
Sbjct: 702 GDHEAMAATSDGVGGMGVAAAGSGNPNVG 730

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513255|ref|XP_003525329.1| PREDICTED: glutamine-dependent NAD(+) synthetase-like [Glycine max]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 127/149 (85%), Positives = 133/149 (89%), Gaps = 2/149 (1%)

Query: 3   QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
           QLDEVDMGMTYEELS+YGRLRKIF CGPVSMF+NLCYRWGARLTPS+VAEKVKHFFKYYS
Sbjct: 584 QLDEVDMGMTYEELSIYGRLRKIFRCGPVSMFQNLCYRWGARLTPSQVAEKVKHFFKYYS 643

Query: 63  INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFGES 122
           INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELV ELD + V   +S
Sbjct: 644 INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVNELDVKDVK--DS 701

Query: 123 SDHEKMGTTLDGGGGMGVIAAGSGNPKAG 151
            DHE +  T DG GGMGV AAGSGNP  G
Sbjct: 702 GDHEAVAATSDGVGGMGVAAAGSGNPNVG 730

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053749|ref|XP_002297960.1| predicted protein [Populus trichocarpa] gi|222845218|gb|EEE82765.1| predicted protein [Populus trichocarpa]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/149 (82%), Positives = 134/149 (89%), Gaps = 3/149 (2%)

Query: 3   QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
           QLDEVDMGMTYEELSVYGRLRKIF CGPVSMFKNLCYRWG+RL+P EVA+KVKHFFKYYS
Sbjct: 584 QLDEVDMGMTYEELSVYGRLRKIFRCGPVSMFKNLCYRWGSRLSPLEVADKVKHFFKYYS 643

Query: 63  INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFGES 122
           INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRK+DELVKELDG +V  GE+
Sbjct: 644 INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKMDELVKELDGNEVALGET 703

Query: 123 SDHEKMGTTLDGGGGMGVIAAGSGNPKAG 151
            D +K       G GMG++AAGSG+PK+G
Sbjct: 704 RDEDKSRVN---GVGMGIVAAGSGDPKSG 729

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555661|ref|XP_002518866.1| glutamine-dependent NAD(+) synthetase, putative [Ricinus communis] gi|223541853|gb|EEF43399.1| glutamine-dependent NAD(+) synthetase, putative [Ricinus communis]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/149 (83%), Positives = 133/149 (89%), Gaps = 6/149 (4%)

Query: 3   QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
           QLDEVDMGMTYEELSVYGRLRKI+ CGPVSMFKNLCYRWG+RLTPSEVAEKVKHFFKYYS
Sbjct: 522 QLDEVDMGMTYEELSVYGRLRKIYRCGPVSMFKNLCYRWGSRLTPSEVAEKVKHFFKYYS 581

Query: 63  INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFGES 122
           INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYN RWPYQF+KIDE+V+ELDGE+V   ES
Sbjct: 582 INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNVRWPYQFQKIDEIVEELDGERVALSES 641

Query: 123 SDHEKMGTTLDGGGGMGVIAAGSGNPKAG 151
           +        L  G GMGV+AAGSG+PKAG
Sbjct: 642 NG------VLSNGVGMGVVAAGSGDPKAG 664

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524932|ref|XP_004169475.1| PREDICTED: LOW QUALITY PROTEIN: glutamine-dependent NAD(+) synthetase-like [Cucumis sativus]

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/149 (81%), Positives = 130/149 (87%), Gaps = 13/149 (8%)

Query: 3   QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
           QLDEVDMGMTYEELSVYGR+RKIF CGPVSMFKNLCYRWGA+LTPSEVAEKVKHFFKYYS
Sbjct: 584 QLDEVDMGMTYEELSVYGRMRKIFRCGPVSMFKNLCYRWGAKLTPSEVAEKVKHFFKYYS 643

Query: 63  INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFGES 122
           INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYN+RWPYQFRKID+LV+EL+G+ +   ES
Sbjct: 644 INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNSRWPYQFRKIDKLVEELNGDGIAIKES 703

Query: 123 SDHEKMGTTLDGGGGMGVIAAGSGNPKAG 151
           S             GMGV+AAGSGNPK G
Sbjct: 704 S-------------GMGVVAAGSGNPKVG 719

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452230|ref|XP_004143863.1| PREDICTED: glutamine-dependent NAD(+) synthetase-like [Cucumis sativus]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 121/149 (81%), Positives = 130/149 (87%), Gaps = 13/149 (8%)

Query: 3   QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
           QLDEVDMGMTYEELSVYGR+RKIF CGPVSMFKNLCYRWGA+LTPSEVAEKVKHFFKYYS
Sbjct: 584 QLDEVDMGMTYEELSVYGRMRKIFRCGPVSMFKNLCYRWGAKLTPSEVAEKVKHFFKYYS 643

Query: 63  INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFGES 122
           INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYN+RWPYQFRKID+LV+EL+G+ +   ES
Sbjct: 644 INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNSRWPYQFRKIDKLVEELNGDGIAIKES 703

Query: 123 SDHEKMGTTLDGGGGMGVIAAGSGNPKAG 151
           S             GMGV+AAGSGNPK G
Sbjct: 704 S-------------GMGVVAAGSGNPKVG 719

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242048246|ref|XP_002461869.1| hypothetical protein SORBIDRAFT_02g009640 [Sorghum bicolor] gi|241925246|gb|EER98390.1| hypothetical protein SORBIDRAFT_02g009640 [Sorghum bicolor]

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/150 (75%), Positives = 129/150 (86%), Gaps = 1/150 (0%)

Query: 2   KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYY 61
            QLDEVDMGMTYEELS+YGRLRKIF CGPVSMF+NLC+ W  RL+PSEVA+KVKHFFKYY
Sbjct: 583 NQLDEVDMGMTYEELSIYGRLRKIFRCGPVSMFQNLCHSWCGRLSPSEVADKVKHFFKYY 642

Query: 62  SINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFGE 121
           +INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYN+RWPYQFRKI+ELV+E+D +   +  
Sbjct: 643 AINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNSRWPYQFRKINELVQEMDKDG-KWET 701

Query: 122 SSDHEKMGTTLDGGGGMGVIAAGSGNPKAG 151
           S++ +  G T   G GMGV+AAGS NP AG
Sbjct: 702 SAEGKLRGQTGAQGSGMGVVAAGSANPSAG 731

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414588846|tpg|DAA39417.1| TPA: hypothetical protein ZEAMMB73_201442 [Zea mays]

 Score =  242 bits (617), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 112/150 (74%), Positives = 129/150 (86%), Gaps = 1/150 (0%)

Query: 2   KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYY 61
            QLDE+DMGMTYEELS+YGRLRKIF CGPVSMF+NLC+ W  RL+PSEVA+KVKHFFKYY
Sbjct: 583 NQLDEIDMGMTYEELSIYGRLRKIFRCGPVSMFQNLCHSWCGRLSPSEVADKVKHFFKYY 642

Query: 62  SINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFGE 121
           +INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYN+RWPYQFRKI+ELV+E+D +   +G 
Sbjct: 643 AINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNSRWPYQFRKINELVQEMDKDG-KWGT 701

Query: 122 SSDHEKMGTTLDGGGGMGVIAAGSGNPKAG 151
           S++ +    T   G GMGV+AAGS NP AG
Sbjct: 702 SAEGKLGAQTGAQGTGMGVVAAGSANPSAG 731

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357122994|ref|XP_003563198.1| PREDICTED: glutamine-dependent NAD(+) synthetase-like [Brachypodium distachyon]

 Score =  238 bits (608), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 113/153 (73%), Positives = 128/153 (83%), Gaps = 4/153 (2%)

Query: 2   KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYY 61
            QLDEVDMGMTYEELS+YGRLRKIF CGPVSMF+NLC+RW  RL+PSEVA+KVKHFFKYY
Sbjct: 583 NQLDEVDMGMTYEELSIYGRLRKIFRCGPVSMFQNLCHRWCGRLSPSEVADKVKHFFKYY 642

Query: 62  SINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFGE 121
           +INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYN+ WPYQFRKIDELV+++D +   + +
Sbjct: 643 AINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNSAWPYQFRKIDELVQDIDKDG-KWED 701

Query: 122 SSDHE---KMGTTLDGGGGMGVIAAGSGNPKAG 151
            SD +     G     G GMGV+AAGS NP AG
Sbjct: 702 PSDAQLRGHRGVRSAQGSGMGVVAAGSANPSAG 734

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
TAIR|locus:2205667	725	AT1G55090 [Arabidopsis thalian	0.782	0.164	0.840	9.9e-55
SGD|S000001116	714	QNS1 "Glutamine-dependent NAD(	0.75	0.159	0.640	2.7e-37
DICTYBASE|DDB_G0285877	713	nadsyn1 "glutamine-dependent N	0.717	0.152	0.672	5.6e-37
UNIPROTKB|Q5ZMA6	707	NADSYN1 "Glutamine-dependent N	0.815	0.175	0.616	1.2e-36
UNIPROTKB|F1P4D3	707	NADSYN1 "Glutamine-dependent N	0.815	0.175	0.616	1.9e-36
ZFIN|ZDB-GENE-070615-22	694	nadsyn1 "NAD synthetase 1" [Da	0.730	0.159	0.666	2.3e-36
POMBASE|SPCC553.02	700	SPCC553.02 "glutamine-dependen	0.723	0.157	0.666	2.4e-36
UNIPROTKB|Q3ZBF0	706	NADSYN1 "Glutamine-dependent N	0.763	0.164	0.637	8.7e-36
RGD|727801	725	Nadsyn1 "NAD synthetase 1" [Ra	0.743	0.155	0.646	9.6e-36
UNIPROTKB|Q812E8	725	Nadsyn1 "Glutamine-dependent N	0.743	0.155	0.646	9.6e-36

TAIR|locus:2205667 AT1G55090 [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 100/119 (84%), Positives = 112/119 (94%)

Query:     3 QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
             QLDEVDMGMTYEELSVYGR+RKIF CGPVSMFKNLCY+WG +L+P+EVAEKVK+FFKYYS
Sbjct:   584 QLDEVDMGMTYEELSVYGRMRKIFRCGPVSMFKNLCYKWGTKLSPAEVAEKVKYFFKYYS 643

Query:    63 INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFGE 121
             INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYN++WPYQF+KIDE+V  L+G+ V F E
Sbjct:   644 INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNSKWPYQFKKIDEIVDSLNGDSVAFPE 702

GO:0003952 "NAD+ synthase (glutamine-hydrolyzing) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA;ISS

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=RCA

SGD|S000001116 QNS1 "Glutamine-dependent NAD(+) synthetase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 407 (148.3 bits), Expect = 2.7e-37, P = 2.7e-37
 Identities = 73/114 (64%), Positives = 90/114 (78%)

Query:     3 QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
             Q DE+DMGMTYEEL V+G LRK+  CGP SMF  L ++W  +LTP +++EKVK FF +Y+
Sbjct:   591 QSDEIDMGMTYEELGVFGYLRKVEKCGPYSMFLKLLHQWSPKLTPRQISEKVKRFFFFYA 650

Query:    63 INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEK 116
             INRHK TVLTPSYHAE YSPEDNRFDLR FL N R+P+  RKIDE+V++ +  K
Sbjct:   651 INRHKQTVLTPSYHAEQYSPEDNRFDLRPFLINPRFPWASRKIDEVVEQCEAHK 704

GO:0005524 "ATP binding" evidence=IEA

GO:0016811 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides" evidence=IDA;IMP

GO:0016874 "ligase activity" evidence=IEA

GO:0009435 "NAD biosynthetic process" evidence=IEA;IMP;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0003952 "NAD+ synthase (glutamine-hydrolyzing) activity" evidence=IEA;ISS;IMP;IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

DICTYBASE|DDB_G0285877 nadsyn1 "glutamine-dependent NAD(+) synthetase" [Dictyostelium discoideum (taxid:44689)]

 Score = 404 (147.3 bits), Expect = 5.6e-37, P = 5.6e-37
 Identities = 74/110 (67%), Positives = 88/110 (80%)

Query:     3 QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
             Q DE+DMGMTYEELS++G+LRK+  CGPVSMF+ L   W A L PS VAEKVK FF YY+
Sbjct:   584 QSDEIDMGMTYEELSIFGKLRKVNRCGPVSMFERLVADW-AHLEPSVVAEKVKRFFYYYA 642

Query:    63 INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKEL 112
             INRHK+T LTPSYHAE YSP+DNR+D RQFLYN++W  QF  ID++V  L
Sbjct:   643 INRHKLTTLTPSYHAEGYSPDDNRYDHRQFLYNSKWDVQFETIDKIVLRL 692

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003952 "NAD+ synthase (glutamine-hydrolyzing) activity" evidence=IEA;ISS

GO:0016811 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides" evidence=ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q5ZMA6 NADSYN1 "Glutamine-dependent NAD(+) synthetase" [Gallus gallus (taxid:9031)]

 Score = 401 (146.2 bits), Expect = 1.2e-36, P = 1.2e-36
 Identities = 77/125 (61%), Positives = 88/125 (70%)

Query:     1 MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKY 60
             + Q DE DMGMTY ELS+YG+LRKI   GP SMF  L   W    TP EVA KVKHFF+ 
Sbjct:   583 VSQTDEADMGMTYAELSIYGKLRKIAKAGPYSMFCKLINLWKEICTPREVASKVKHFFRM 642

Query:    61 YSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDG-EKVPF 119
             YS+NRHKMT LTPSYHAE+YSP+DNRFDLR FLYN  W +QFR ID  V  L+  E +  
Sbjct:   643 YSVNRHKMTTLTPSYHAENYSPDDNRFDLRPFLYNTTWSWQFRCIDNQVSHLEKKEGISV 702

Query:   120 GESSD 124
              E +D
Sbjct:   703 AEDTD 707

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0003952 "NAD+ synthase (glutamine-hydrolyzing) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009435 "NAD biosynthetic process" evidence=IEA

UNIPROTKB|F1P4D3 NADSYN1 "Glutamine-dependent NAD(+) synthetase" [Gallus gallus (taxid:9031)]

 Score = 399 (145.5 bits), Expect = 1.9e-36, P = 1.9e-36
 Identities = 77/125 (61%), Positives = 87/125 (69%)

Query:     1 MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKY 60
             + Q DE DMGMTY ELS+YG+LRKI   GP SMF  L   W    TP EVA KVKHFF+ 
Sbjct:   583 VSQTDEADMGMTYAELSIYGKLRKIAKAGPYSMFCKLINLWKEICTPREVASKVKHFFRM 642

Query:    61 YSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDG-EKVPF 119
             YS+NRHKMT LTPSYHAE+YSP+DNRFDLR FLYN  W +QFR ID  V  L+  E +  
Sbjct:   643 YSVNRHKMTTLTPSYHAENYSPDDNRFDLRPFLYNTTWSWQFRCIDNQVSHLEKKEGISV 702

Query:   120 GESSD 124
              E  D
Sbjct:   703 AEDMD 707

GO:0003952 "NAD+ synthase (glutamine-hydrolyzing) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

ZFIN|ZDB-GENE-070615-22 nadsyn1 "NAD synthetase 1" [Danio rerio (taxid:7955)]

 Score = 398 (145.2 bits), Expect = 2.3e-36, P = 2.3e-36
 Identities = 74/111 (66%), Positives = 84/111 (75%)

Query:     3 QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
             Q DE DMGMTY ELSV GRLRKI  CGP SMF  L   W    +PS+VA KVKHFF+ YS
Sbjct:   584 QTDEADMGMTYSELSVIGRLRKISKCGPYSMFCKLISSWKDTFSPSQVATKVKHFFRMYS 643

Query:    63 INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELD 113
             INRHKMT +TPSYHA+SY P+DNRFDLR FLYN RW +QFR ID  V +++
Sbjct:   644 INRHKMTTVTPSYHADSYGPDDNRFDLRPFLYNTRWSWQFRCIDNEVAKME 694

GO:0003952 "NAD+ synthase (glutamine-hydrolyzing) activity" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPCC553.02 SPCC553.02 "glutamine-dependent NAD(+) synthetase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 398 (145.2 bits), Expect = 2.4e-36, P = 2.4e-36
 Identities = 74/111 (66%), Positives = 87/111 (78%)

Query:     3 QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
             Q DE DMGMTY ELSV+GRLRKI  CGP SMF  L ++WG RL+PS+VAEKVK FF YY 
Sbjct:   586 QSDEADMGMTYAELSVFGRLRKISKCGPYSMFTQLMHQWGDRLSPSQVAEKVKRFFHYYG 645

Query:    63 INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELD 113
             INRHKMT LTPSYHAE+Y  +DNR+DLRQFLY + W +Q +KID L  + +
Sbjct:   646 INRHKMTTLTPSYHAETYGVDDNRYDLRQFLYPS-WTWQNKKIDALASKFE 695

GO:0003952 "NAD+ synthase (glutamine-hydrolyzing) activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISM

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0009435 "NAD biosynthetic process" evidence=ISO

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=ISM

GO:0034641 "cellular nitrogen compound metabolic process" evidence=IC

UNIPROTKB|Q3ZBF0 NADSYN1 "Glutamine-dependent NAD(+) synthetase" [Bos taurus (taxid:9913)]

 Score = 393 (143.4 bits), Expect = 8.7e-36, P = 8.7e-36
 Identities = 74/116 (63%), Positives = 87/116 (75%)

Query:     1 MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKY 60
             + Q DE DMGMTY ELSVYGRLRK+   GP SMF  L   W    +P +VA+KVK FF  
Sbjct:   583 VSQTDEEDMGMTYAELSVYGRLRKVAKTGPYSMFCKLLDMWRDTCSPRQVADKVKCFFSK 642

Query:    61 YSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEK 116
             YS+NRHKMT LTP+YHAESYSP+DNRFDLR FLYN RWP+QFR I+  V +L+G +
Sbjct:   643 YSMNRHKMTTLTPAYHAESYSPDDNRFDLRPFLYNTRWPWQFRCIENQVLQLEGRQ 698

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0003952 "NAD+ synthase (glutamine-hydrolyzing) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

RGD|727801 Nadsyn1 "NAD synthetase 1" [Rattus norvegicus (taxid:10116)]

 Score = 393 (143.4 bits), Expect = 9.6e-36, P = 9.6e-36
 Identities = 73/113 (64%), Positives = 85/113 (75%)

Query:     1 MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKY 60
             + Q+DE DMGMTY ELS++GRLRK+   GP SMF  L   W    TP +VAEKVK FF  
Sbjct:   583 VSQMDEEDMGMTYTELSIFGRLRKVAKAGPYSMFCKLLNMWKDSCTPRQVAEKVKRFFSK 642

Query:    61 YSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELD 113
             YSINRHKMT LTP+YHAE+YSP+DNRFDLR FLYN RWP+QF  ID  V +L+
Sbjct:   643 YSINRHKMTTLTPAYHAENYSPDDNRFDLRPFLYNTRWPWQFLCIDNQVVQLE 695

GO:0003674 "molecular_function" evidence=ND

GO:0003952 "NAD+ synthase (glutamine-hydrolyzing) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

UNIPROTKB|Q812E8 Nadsyn1 "Glutamine-dependent NAD(+) synthetase" [Rattus norvegicus (taxid:10116)]

 Score = 393 (143.4 bits), Expect = 9.6e-36, P = 9.6e-36
 Identities = 73/113 (64%), Positives = 85/113 (75%)

Query:     1 MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKY 60
             + Q+DE DMGMTY ELS++GRLRK+   GP SMF  L   W    TP +VAEKVK FF  
Sbjct:   583 VSQMDEEDMGMTYTELSIFGRLRKVAKAGPYSMFCKLLNMWKDSCTPRQVAEKVKRFFSK 642

Query:    61 YSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELD 113
             YSINRHKMT LTP+YHAE+YSP+DNRFDLR FLYN RWP+QF  ID  V +L+
Sbjct:   643 YSINRHKMTTLTPAYHAENYSPDDNRFDLRPFLYNTRWPWQFLCIDNQVVQLE 695

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_III001206	NAD+ synthase (glutamine-hydrolysing) (EC-6.3.5.1) (730 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_scaffold_308000002	nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (247 aa)						•	•		0.917
	gw1.XIII.983.1	nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (237 aa)						•	•		0.916
	gw1.70.673.1	nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (237 aa)						•	•		0.916
	gw1.IX.3597.1	NADH kinase/NAD kinase (EC-2.7.1.86) (520 aa)						•			0.910
	gw1.I.1484.1	NADH kinase/NAD kinase (EC-2.7.1.86) (520 aa)						•			0.909
	grail3.0151001701	hypothetical protein (395 aa)						•			0.899
	fgenesh4_pg.C_scaffold_145000062	hypothetical protein (414 aa)						•			0.899

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	152
PLN02339	700	PLN02339, PLN02339, NAD+ synthase (glutamine-hydro	6e-90
cd00553	248	cd00553, NAD_synthase, NAD+ synthase is a homodime	2e-14

>gnl|CDD|177973 PLN02339, PLN02339, NAD+ synthase (glutamine-hydrolysing)

 Score =  275 bits (704), Expect = 6e-90
 Identities = 99/116 (85%), Positives = 103/116 (88%)

Query: 2   KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYY 61
            Q DE DMGMTYEEL VYGRLRKIF CGPVSMFKNLC+ W  RL+PSEVA KVK FFKYY
Sbjct: 583 SQTDEEDMGMTYEELGVYGRLRKIFRCGPVSMFKNLCHEWNGRLSPSEVAAKVKDFFKYY 642

Query: 62  SINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKV 117
           SINRHKMT LTPSYHAESYSP+DNRFDLRQFLYN RWPYQFRKIDELV+ELDGE V
Sbjct: 643 SINRHKMTTLTPSYHAESYSPDDNRFDLRQFLYNTRWPYQFRKIDELVEELDGETV 698

Length = 700

>gnl|CDD|238309 cd00553, NAD_synthase, NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD)

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 3   QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
           Q DE ++GM YEEL  +  LR     GP              L P  + E VK  F+ Y 
Sbjct: 194 QTDEDELGMPYEELDQFLYLRLEGGLGP-----------EEILAPGIIEEVVKRVFRLYK 242

Query: 63  INRHKM 68
            N HK 
Sbjct: 243 KNEHKR 248

The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source . Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	152
KOG2303	706	consensus Predicted NAD synthase, contains CN hydr	100.0
PLN02339	700	NAD+ synthase (glutamine-hydrolysing)	100.0
PRK02628	679	nadE NAD synthetase; Reviewed	99.56
PRK13980	265	NAD synthetase; Provisional	99.09
PRK13981	540	NAD synthetase; Provisional	98.8
cd00553	248	NAD_synthase NAD+ synthase is a homodimer, which c	98.72
PF02540	242	NAD_synthase: NAD synthase; InterPro: IPR022310 NA	98.57
TIGR00552	250	nadE NAD+ synthetase. NAD+ synthetase is a nearly	98.52
COG0171	268	NadE NAD synthase [Coenzyme metabolism]	98.49
PRK00768	268	nadE NAD synthetase; Reviewed	98.15
PRK00876	326	nadE NAD synthetase; Reviewed	97.94
PTZ00323	294	NAD+ synthase; Provisional	97.64
PRK02628	679	nadE NAD synthetase; Reviewed	97.47

>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]

Probab=100.00  E-value=4.8e-60  Score=430.27  Aligned_cols=119  Identities=68%  Similarity=1.173  Sum_probs=115.2

Q ss_pred             CCCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccccC
Q 031818            1 MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESY   80 (152)
Q Consensus         1 ~~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~Y   80 (152)
                      .+||||+||||||+||++||||||+.||||||||++|++.|+++++|+||++|||+||.+|++||||||+||||||||+|
T Consensus       583 ~~QtDE~dmGmTY~ELsv~GrlRK~~~cGPysMF~kLl~~W~~klsp~qvaEKVk~FF~~Y~iNRHKmTvlTPsyHAE~Y  662 (706)
T KOG2303|consen  583 YSQTDEADMGMTYAELSVFGRLRKVSKCGPYSMFCKLLHQWGDKLSPRQVAEKVKRFFSYYSINRHKMTVLTPSYHAENY  662 (706)
T ss_pred             ccccchhhhCccHHHHHHhHhhccccccCcHHHHHHHHHHhcCcCCHHHHHHHHHHHHhhheeccccceecccccccccC
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccccccCCCCchhhhHHHHHHHHhhcCCCCC
Q 031818           81 SPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPF  119 (152)
Q Consensus        81 spDdnrfDlRpfly~~~~~~qf~~id~~~~~~~~~~~~~  119 (152)
                      |||||||||||||||++|||||+|||++|+++|....++
T Consensus       663 speDnRfDlRpFLynp~w~wqfkkIde~v~~~e~~~~~~  701 (706)
T KOG2303|consen  663 SPEDNRFDLRPFLYNPSWPWQFKKIDEQVEQLEANSTKS  701 (706)
T ss_pred             CCccccccccccccCCCCchHHHHHHHHHHHhhhccCcc
Confidence            999999999999999999999999999999999866553

>PLN02339 NAD+ synthase (glutamine-hydrolysing)

Probab=100.00  E-value=3.7e-47  Score=351.42  Aligned_cols=115  Identities=85%  Similarity=1.420  Sum_probs=112.2

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccccCC
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYS   81 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~Ys   81 (152)
                      .||||+||||||++|+.|++||+..+|||++||.+|++.|++.+++++|+.||++||++|++|||||+++|||||+|+||
T Consensus       583 ~Q~dE~~lG~~Y~~l~~~~~l~~~~~~~p~~i~~~~~~~~~~~y~~~~i~~~~~~F~~~f~~nq~Kr~~~~p~~~~~~~s  662 (700)
T PLN02339        583 SQTDEEDMGMTYEELGVYGRLRKIFRCGPVSMFKNLCHEWNGRLSPSEVAAKVKDFFKYYSINRHKMTTLTPSYHAESYS  662 (700)
T ss_pred             CCCCHHHHCcCHHHHHHHHHHHhccCCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhhccccccCCccccCCCC
Confidence            59999999999999999999999999999999999999998789999999999999999999999999999999999999


Q ss_pred             CCCCCCcccccccCCCCchhhhHHHHHHHHhhcCC
Q 031818           82 PEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEK  116 (152)
Q Consensus        82 pDdnrfDlRpfly~~~~~~qf~~id~~~~~~~~~~  116 (152)
                      ||||||||||||||++|||||++||++|+++|...
T Consensus       663 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  697 (700)
T PLN02339        663 PDDNRFDLRQFLYNTRWPYQFRKIDELVEELDGET  697 (700)
T ss_pred             CCCCcccccccccCCCCchhHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999643

>PRK02628 nadE NAD synthetase; Reviewed

Probab=99.56  E-value=1.1e-15  Score=141.24  Aligned_cols=82  Identities=23%  Similarity=0.221  Sum_probs=72.0

Q ss_pred             CCCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccccC
Q 031818            1 MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESY   80 (152)
Q Consensus         1 ~~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~Y   80 (152)
                      |.|+||.+|| ||++||.|..                 ..|..+++|++|+.+++++|+.|  |||||++ ||+||++.|
T Consensus       556 ~~q~ded~lg-pY~~~D~~l~-----------------~~~~~~~~~~~i~~~~~~~f~~~--~~~~~~~-~~~~~~~~~  614 (679)
T PRK02628        556 IVQSTEDIIG-PYELQDFFLY-----------------YFLRYGFRPSKIAFLAWHAWKDA--ERGAWPG-FPEDKRPAY  614 (679)
T ss_pred             CCCcchhccC-CHHHHHHHHH-----------------HHHhcCCCHHHHHHHHHHHhhcc--ccccCCC-CcchhcccC
Confidence            4699999998 9999998877                 33345688899999999999888  9999999 999999999


Q ss_pred             CCCCCCCcccccccCCCCchhhhH
Q 031818           81 SPEDNRFDLRQFLYNARWPYQFRK  104 (152)
Q Consensus        81 spDdnrfDlRpfly~~~~~~qf~~  104 (152)
                      ++++++..+|+|++ ..|.+|||+
T Consensus       615 ~~~~v~~~~~~f~~-~~~~~qfKR  637 (679)
T PRK02628        615 DLATIKKWLEVFLR-RFFSSQFKR  637 (679)
T ss_pred             CHHHHHHHHHHHcc-hhchHhhCc
Confidence            99999999999999 557999986

>PRK13980 NAD synthetase; Provisional

Probab=99.09  E-value=2e-10  Score=95.11  Aligned_cols=67  Identities=19%  Similarity=0.221  Sum_probs=54.1

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCcccccc
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAES   79 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~   79 (152)
                      .||||.||||||++||.|.......+++|-.|...+      +.++    +.|+++++++.+|+|||. +||.+|+.+
T Consensus       195 ~q~De~~lg~~Y~~lD~~l~~~~~~~~~~~~i~~~~------~~~~----~~~~~i~~~~~~~~~Kr~-~p~~~~~~~  261 (265)
T PRK13980        195 GQTDEGELGFSYETIDEILYLLFDKKMSREEILEEL------GVPE----DLVDRVRRLVQRSQHKRR-LPPIPKLSG  261 (265)
T ss_pred             CCCCHHHcCCCHHHHHHHHHHHHHcCCCHHHHHHHh------CCCH----HHHHHHHHHHHHhhhccc-CCCCcCCCc
Confidence            499999999999999999987777888888888654      1232    366667777799999998 899998743

>PRK13981 NAD synthetase; Provisional

Probab=98.80  E-value=1.6e-08  Score=90.84  Aligned_cols=81  Identities=12%  Similarity=0.055  Sum_probs=64.5

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccccCC
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYS   81 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~Ys   81 (152)
                      .||||.||| ||++||.+.......+.+|-++..     .  +++++    .|+++.+++.+|||||..+||..|+.+.+
T Consensus       457 ~q~de~~l~-~Y~~lD~~l~~~~~~~~~~~~~~~-----~--~~~~~----~~~~~~~~~~~~~~KR~~~pp~~~~~~~~  524 (540)
T PRK13981        457 NQTDQDSLP-PYDVLDAILERLVEEEQSVAEIVA-----A--GFDRA----TVRRVERLLYIAEYKRRQAAPGVKITRRA  524 (540)
T ss_pred             CCcCccccC-CHHHHHHHHHHHHHcCCCHHHHHH-----c--CCCHH----HHHHHHHHHHhchhccccCCCcceecCCC
Confidence            499999998 999999999988888999999964     1  35554    34555566689999999889999999988


Q ss_pred             CCCCCCcccccccCCCCch
Q 031818           82 PEDNRFDLRQFLYNARWPY  100 (152)
Q Consensus        82 pDdnrfDlRpfly~~~~~~  100 (152)
                      ++      +-|.||..+.|
T Consensus       525 ~~------~~~r~p~~~~~  537 (540)
T PRK13981        525 FG------RDRRYPITNRF  537 (540)
T ss_pred             CC------CCccCccccCc
Confidence            76      34567776654

>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD)

Probab=98.72  E-value=1.2e-08  Score=83.38  Aligned_cols=56  Identities=39%  Similarity=0.580  Sum_probs=45.4

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhccccc
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKM   68 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKr   68 (152)
                      .|+||.||||||++||.|.+.....+++|..+.           ......+.|+++++++.+|+|||
T Consensus       193 ~q~de~~lg~~Y~~lD~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~i~~~~~~~~~KR  248 (248)
T cd00553         193 GQTDEDELGMPYEELDQFLYLRLEGGLGPEEIL-----------APGIIEEVVKRVFRLYKKNEHKR  248 (248)
T ss_pred             CCCCHHHhCCCHHHHHHHHHHHHhcCCCHhhhh-----------ccCCCHHHHHHHHHHHHhccccc
Confidence            499999999999999999999999999995443           11233457777778889999998

The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .

>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6

Probab=98.57  E-value=7.2e-08  Score=79.92  Aligned_cols=58  Identities=26%  Similarity=0.300  Sum_probs=43.4

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhccccccc
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTV   70 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~   70 (152)
                      .||||.|||+||++||.|.+ ....+.+|.++...      .+. +.++.++|   .+++.+|+|||..
T Consensus       184 gqtDE~elg~~Y~~lD~~l~-~~~~~~~~~~~~~~------~~~-~~~~~~~i---~~~~~~~~hKr~~  241 (242)
T PF02540_consen  184 GQTDEDELGFSYEELDAILR-LIEEGLSPEEIAEK------LGV-DPEVVERI---ERLHKRSEHKRRQ  241 (242)
T ss_dssp             T-BHHHHHTSTHHHHHHHHH-HHTSSTTHHHHHHT------CTS--HHHHHHH---HHHHHHTGGGGSS
T ss_pred             CCCCHHHhCCCHHHHHHHHH-HHHcCCCHHHHHHh------cCC-CHHHHHHH---HHHHHhhhhccCC
Confidence            49999999999999999999 77888999888743      122 33444455   5555999999985

3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....

>TIGR00552 nadE NAD+ synthetase

Probab=98.52  E-value=1.3e-07  Score=77.61  Aligned_cols=53  Identities=26%  Similarity=0.416  Sum_probs=39.1

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCcc
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSY   75 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSf   75 (152)
                      -||||.||||||++||.|.++....                 +.++.++.++|++.   +.+|+|||.. ||++
T Consensus       191 ~q~de~~~g~~y~~~D~~l~~~~~~-----------------~~~~~~~~~~i~~~---~~~~~~kr~~-~~~~  243 (250)
T TIGR00552       191 GQTDETELGITYDELDDYLKGIEEL-----------------SQTVQEVVKRIESL---VQKSEHKRRL-PATI  243 (250)
T ss_pred             CCcCHHHhCcCHHHHHHHHHHHhhc-----------------CCCHHHHHHHHHHH---HHHHHhcccC-CCCc
Confidence            3999999999999999998854432                 23445555556554   4999999975 6765

NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.

>COG0171 NadE NAD synthase [Coenzyme metabolism]

Probab=98.49  E-value=1.6e-07  Score=80.14  Aligned_cols=57  Identities=26%  Similarity=0.310  Sum_probs=41.9

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccc
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAE   78 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e   78 (152)
                      .|+||.+|||||++||.|...+...               . .--+.++..+|++++   .+|+|||. +||..+..
T Consensus       203 ~q~DE~~lg~~Y~~lD~~L~~~~~~---------------~-~~i~~~~~~~i~~~~---~~~~~KR~-~p~~~~~~  259 (268)
T COG0171         203 GQTDEAELGMPYEELDDILYGLLEN---------------G-QEISEELVKKIERLY---KKSEHKRR-LPIGPKIT  259 (268)
T ss_pred             CCCCHHHhCCCHHHHHHHHHHhhhh---------------h-cccCHHHHHHHHHHH---HHHHhhhc-CCCCcCcc
Confidence            4999999999999999998844333               1 123455556666655   99999999 67776654

>PRK00768 nadE NAD synthetase; Reviewed

Probab=98.15  E-value=2.5e-06  Score=72.83  Aligned_cols=46  Identities=26%  Similarity=0.438  Sum_probs=35.7

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccC
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVL   71 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~l   71 (152)
                      .||||.|||+||++||.|...                     .-...++.++|++.+   .+|+|||...
T Consensus       218 gq~DE~~lg~~Y~~lD~~L~~---------------------~~~~~~~~~~i~~~~---~~~~~Kr~~p  263 (268)
T PRK00768        218 GLPDEVALGVTYDQIDDYLEG---------------------KPVSEEAAETIENWY---LKTEHKRHLP  263 (268)
T ss_pred             CCCChhhcCCCHHHHHHHHhc---------------------CCCCHHHHHHHHHHH---HHHHHcccCC
Confidence            499999999999999998851                     112455667777666   8999999863

>PRK00876 nadE NAD synthetase; Reviewed

Probab=97.94  E-value=2.5e-05  Score=68.14  Aligned_cols=62  Identities=15%  Similarity=0.081  Sum_probs=47.1

Q ss_pred             CCCcccC-cCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhccccccc
Q 031818            2 KQLDEVD-MGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTV   70 (152)
Q Consensus         2 ~QTDE~D-MGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~   70 (152)
                      -|+||+| |||||++||.+.+. ...+++|-++...+      +.+++.|..-.+..-+...+|+|||..
T Consensus       253 ~q~de~~~~g~~Y~~lD~~L~~-~~~~~~~~~~~~~~------g~~~~~v~~v~~~~~~~~~~~~~k~~~  315 (326)
T PRK00876        253 PQTQEEFYFALPYDRMDLCLYA-LNHGVPAEEVAAAL------GLTPEQVERVYRDIEAKRRTTRYLHAP  315 (326)
T ss_pred             CCChhhhhcCCCHHHHHHHHHH-hhcCCCHHHHHHhc------CCCHHHHHHHHHHHHHHHhhhhhccCC
Confidence            4999999 89999999998874 46778888877542      356665554455556677999999976

>PTZ00323 NAD+ synthase; Provisional

Probab=97.64  E-value=6.8e-05  Score=64.57  Aligned_cols=65  Identities=17%  Similarity=0.139  Sum_probs=41.7

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhccccccc
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTV   70 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~   70 (152)
                      .||||.||||||++|+.|.++.....-.-..+|   ++.|. ..+..|..+..+..-.-..||-||-.-
T Consensus       226 ~qtDE~elg~~Y~~lD~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (294)
T PTZ00323        226 GQTDEDELGFPYDFVELYTEWYLKLNETEKKSF---LSSLS-EEARKQFEEYSAACELVHRRNAHKLQG  290 (294)
T ss_pred             CCcCHhhcCCCHHHHHHHHHHHHHhhHHHHHHH---HHhcC-HHHHHHHHHHHHHHHHHHhcccccccC
Confidence            499999999999999999997666544333333   24443 223334444444444444899999753

>PRK02628 nadE NAD synthetase; Reviewed

Probab=97.47  E-value=0.0002  Score=67.10  Aligned_cols=59  Identities=12%  Similarity=0.135  Sum_probs=54.6

Q ss_pred             hccChHHHHHHHHHHhCC---------------CCChHHHHHHHHHHHHHhhhcccccccCCCcccccc-CCCCC
Q 031818           26 FHCGPVSMFKNLCYRWGA---------------RLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAES-YSPED   84 (152)
Q Consensus        26 ~k~GP~smf~~L~~~w~~---------------~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~-YspDd   84 (152)
                      .++||..++.++++.|++               ++++++|..+++.||+++.+||+||..+||++|+.+ .|++-
T Consensus       580 ~~~~~~~i~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~f~~~~~~~qfKR~~~p~g~kv~~~~~ls~  654 (679)
T PRK02628        580 YGFRPSKIAFLAWHAWKDAERGAWPGFPEDKRPAYDLATIKKWLEVFLRRFFSSQFKRSALPNGPKVGSGGSLSP  654 (679)
T ss_pred             cCCCHHHHHHHHHHHhhccccccCCCCcchhcccCCHHHHHHHHHHHcchhchHhhCcccCCCCCeeCCCCCCCC
Confidence            689999999999998875               699999999999999999999999999999999999 88654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	152
3ilv_A	634	Glutamine-dependent NAD(+) synthetase; protein str	2e-31
3sdb_A	680	Glutamine-dependent NAD(+) synthetase; glutamine-a	6e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634

 Score =  116 bits (293), Expect = 2e-31
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 4/111 (3%)

Query: 2   KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYY 61
            Q DE D+ M Y+ L+   R        PV ++  L        T +E    VK FF+ +
Sbjct: 525 TQTDERDL-MPYDVLARIERKAIKERLSPVQVYTALLTEGP--YTKNEFKYWVKKFFRLW 581

Query: 62  SINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKEL 112
           SIN+ K   L PS+H + ++ +   +     L +  +  +   +D+     
Sbjct: 582 SINQWKRERLAPSFHMDDFNIDPRSWYRFPILSSG-FAKELNDLDQEGHHH 631

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680

 Score =  104 bits (261), Expect = 6e-27
 Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 27/130 (20%)

Query: 3   QLDEVDMG-MTYEELSVYGRLRKIFHCGPVSMFKNLCYRWG----------------ARL 45
           Q  E  +G    ++ S++  LR  F   P  +     + W                    
Sbjct: 556 QSSEAKVGPFALQDFSLFQVLRYGF--RPSKIAFLAWHAWNDAERGNWPPGFPKSERPSY 613

Query: 46  TPSEVAEK----VKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQ 101
           + +E+       V+ F+ +    R  +       H  + SP   R D R     +   + 
Sbjct: 614 SLAEIRHWLQIFVQRFYSFSQFKRSALPNGPKVSHGGALSP---RGDWRAPSDMSARIW- 669

Query: 102 FRKIDELVKE 111
             +ID  V +
Sbjct: 670 LDQIDREVPK 679

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 3e-07
 Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 15/119 (12%)

Query: 1   MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKY 60
           +  L+  +    ++ LSV+     I    P      L   W   +  S+V   V    KY
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHI----PT---ILLSLIWFD-VIKSDVMVVVNKLHKY 414

Query: 61  YSINRH--KMTVLTPSYHAESYSPEDNRFDL-RQFL--YNARWPYQFRKIDELVKELDG 114
             + +   + T+  PS + E     +N + L R  +  YN   P  F   D +   LD 
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI--PKTFDSDDLIPPYLDQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 46/154 (29%)

Query: 2   KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFK-- 59
           +++D +                ++F              W       E+   V+ F +  
Sbjct: 49  EEIDHI-----IMSKDAVSGTLRLF--------------WTLLSKQEEM---VQKFVEEV 86

Query: 60  ----Y-YSINRHKMTVLTPSYHAESYSPEDNRF--DLRQFL-YNARWPYQFRKIDELVKE 111
               Y + ++  K     PS     Y  + +R   D + F  YN      + K+ + + E
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 112 LDGEKVPFGESSDHEKMGTTLDGGGGMG--VIAA 143
           L   K               +DG  G G   +A 
Sbjct: 147 LRPAK------------NVLIDGVLGSGKTWVAL 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	152
3ilv_A	634	Glutamine-dependent NAD(+) synthetase; protein str	99.79
3sdb_A	680	Glutamine-dependent NAD(+) synthetase; glutamine-a	99.43
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	99.09
1xng_A	268	NH(3)-dependent NAD(+) synthetase; amidotransferas	99.02
1kqp_A	271	NAD+ synthase, NH(3)-dependent NAD(+) synthetase,	98.92
1wxi_A	275	NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l	98.92
2e18_A	257	NH(3)-dependent NAD(+) synthetase; ligase, structu	98.9
3q4g_A	279	NH(3)-dependent NAD(+) synthetase; structural geno	98.67
3dpi_A	285	NAD+ synthetase; ssgcid, decode, structural genomi	98.54
3fiu_A	249	NH(3)-dependent NAD(+) synthetase; rossman fold, a	98.47
3n05_A	590	NH(3)-dependent NAD(+) synthetase; ligase, structu	98.43
3p52_A	249	NH(3)-dependent NAD(+) synthetase; structural geno	98.17

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}

Probab=99.79  E-value=7.6e-20  Score=165.34  Aligned_cols=80  Identities=31%  Similarity=0.450  Sum_probs=72.5

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccccCC
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYS   81 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~Ys   81 (152)
                      .||||.+| |||++||.|+++++..++||.+|+.++...|+  +++++|+++|++||++|++|||||+.+||++|+++||
T Consensus       525 ~q~de~~l-~~Y~~lD~~l~~~~~~~~~~~~i~~~~~~~~~--~~~~~i~~~v~~~~~~~~~~~~Kr~~~pp~~~v~~~~  601 (634)
T 3ilv_A          525 TQTDERDL-MPYDVLARIERKAIKERLSPVQVYTALLTEGP--YTKNEFKYWVKKFFRLWSINQWKRERLAPSFHMDDFN  601 (634)
T ss_dssp             ------CC-CTTTHHHHHHHHHTTSCCCHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHHHTHHHHTTCCCBCCCSSCC
T ss_pred             CCCCcccc-CCHHHHHHHHHHHHHcCCCHHHHHHHhhhccC--CCHHHHHHHHHHHHHHHHHhHhccccCCCceEEeCCC
Confidence            69999999 99999999999999999999999999999997  9999999999999999999999999999999999999


Q ss_pred             CCC
Q 031818           82 PED   84 (152)
Q Consensus        82 pDd   84 (152)
                      +|.
T Consensus       602 ~~p  604 (634)
T 3ilv_A          602 IDP  604 (634)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            993

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*

Probab=99.43  E-value=2e-13  Score=124.81  Aligned_cols=81  Identities=14%  Similarity=0.158  Sum_probs=72.1

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCC----------------CChHHHHHHHHHHHH-Hhhhc
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGAR----------------LTPSEVAEKVKHFFK-YYSIN   64 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~----------------~sp~eia~kVkrFF~-~ys~N   64 (152)
                      .|+||.+|| ||++||.|.+.....+++|..|+..+.+.|.+.                +++++|+.|+++||+ ||++|
T Consensus       555 ~q~de~~lg-~Y~~~D~~L~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~f~~rf~~~~  633 (680)
T 3sdb_A          555 LQSSEAKVG-PFALQDFSLFQVLRYGFRPSKIAFLAWHAWNDAERGNWPPGFPKSERPSYSLAEIRHWLQIFVQRFYSFS  633 (680)
T ss_dssp             ---CHHHHC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHSCTTSSCCCSSCCGGGCCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred             CCCchhhcC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHhccccccccccccchhhhcCCCHHHHHHHHHHHHHHHhhhc
Confidence            599999998 999999999999999999999999999988753                899999999999999 88889


Q ss_pred             ccccccCCCcccc-ccCCCC
Q 031818           65 RHKMTVLTPSYHA-ESYSPE   83 (152)
Q Consensus        65 rHKrt~ltPSfH~-e~YspD   83 (152)
                      ||||..+||++|+ ...|++
T Consensus       634 qfKr~~~p~gpkv~~~~~ls  653 (680)
T 3sdb_A          634 QFKRSALPNGPKVSHGGALS  653 (680)
T ss_dssp             HHHHTTCCCCCCCCTTCCCC
T ss_pred             cCCcccCCCCCEeCCCCCcC
Confidence            9999999999999 665665

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}

Probab=99.09  E-value=1.1e-10  Score=104.77  Aligned_cols=70  Identities=14%  Similarity=0.145  Sum_probs=53.1

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccc--c
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAE--S   79 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e--~   79 (152)
                      .|+||.+|| ||++||.|.++....+++|.+++..       ++++    +.|++|++++.+|||||..+||..|..  +
T Consensus       480 ~Q~ded~l~-~Y~~lD~~l~~~~~~~~~~~~i~~~-------~~~~----~~v~~~~~~~~~~~~KR~~~p~g~kv~~~a  547 (565)
T 4f4h_A          480 NQTDQDSLP-PYDVLDAIMRMYMEEDRPLAEIVAA-------GYSE----ADVKRVTRLIKINEYKRRQAPVGIRVTHRA  547 (565)
T ss_dssp             -------CC-CHHHHHHHHHHHTTSCCCHHHHHHT-------TCCH----HHHHHHHHHHHHTHHHHTTSCCBCCCSSSC
T ss_pred             CCCCcccCC-CHHHHHHHHHHHHHcCCCHHHHHHc-------CCCH----HHHHHHHHHHHHhhhchhcCCCceEECCCC
Confidence            499999997 9999999999999999999888642       3555    457888888999999999999999976  5


Q ss_pred             CCCC
Q 031818           80 YSPE   83 (152)
Q Consensus        80 YspD   83 (152)
                      ||+|
T Consensus       548 f~~d  551 (565)
T 4f4h_A          548 FGRD  551 (565)
T ss_dssp             SSTT
T ss_pred             CCCC
Confidence            8884

>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A

Probab=99.02  E-value=1.6e-10  Score=93.43  Aligned_cols=72  Identities=17%  Similarity=0.091  Sum_probs=51.8

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHh--hhc--cChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCcccc
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRK--IFH--CGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHA   77 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk--~~k--~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~   77 (152)
                      .|+||.+|||||++|+.|.+..|  +++  ++|-++..+       +++++.    |++|+++|.+|||||+ +||..+.
T Consensus       189 ~q~de~~lg~~y~~ld~~l~~~~~~~~~~~~~~~~i~~~-------~~~~~~----~~~~~~~~~~~~~kr~-~~~~~~~  256 (268)
T 1xng_A          189 GQSDEKDLGYPYSVIDPLLKDIEALFQTKPIDTETLAQL-------GYDEIL----VKNITSRIQKNAFKLE-LPAIAKR  256 (268)
T ss_dssp             TCCHHHHHSSCHHHHHHHHHHHHHHSSSSCCCHHHHHHT-------TCCHHH----HHHHHHHHHHTGGGGS-CCEECCC
T ss_pred             CCcchhhcCCCHHHHHHHHHHHHHHhhccCCCHHHHHHc-------CCCHHH----HHHHHHHHHHhHhccc-CCCCccc
Confidence            49999999999999999999875  332  566666541       234332    8999999999999999 6999999


Q ss_pred             ccCCCCCC
Q 031818           78 ESYSPEDN   85 (152)
Q Consensus        78 e~YspDdn   85 (152)
                      .+..+.-+
T Consensus       257 ~~~~~~~~  264 (268)
T 1xng_A          257 FNPELEHH  264 (268)
T ss_dssp             C-------
T ss_pred             cchhhccc
Confidence            88776654

>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A

Probab=98.92  E-value=4.4e-10  Score=92.01  Aligned_cols=50  Identities=26%  Similarity=0.480  Sum_probs=40.7

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccc
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYH   76 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH   76 (152)
                      .|+||.+|||||++||.|.+.                     ...+++++++|++++   .+|+||| .+||..|
T Consensus       217 ~q~De~~lg~~Y~~ld~~l~~---------------------~~~~~~~~~~v~~~~---~~~~~Kr-~~p~~~~  266 (271)
T 1kqp_A          217 QQSDETELGISYDEIDDYLEG---------------------KEVSAKVSEALEKRY---SMTEHKR-QVPASMF  266 (271)
T ss_dssp             TCBHHHHHSSCHHHHHHHHTT---------------------CCCCHHHHHHHHHHH---HHTGGGG-SSCBCTT
T ss_pred             CCCCHHHhCCCHHHHHHHHHh---------------------cCCCHHHHHHHHHHH---HHhHHhc-CCCCCCc
Confidence            599999999999999999871                     234667777777765   9999999 6688776

>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*

Probab=98.92  E-value=5.1e-10  Score=92.26  Aligned_cols=50  Identities=24%  Similarity=0.399  Sum_probs=39.2

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccc
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYH   76 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH   76 (152)
                      .|+||.+|||||++||.|.+.                     ...+++++++|++++   .+|+||| .+||.+|
T Consensus       220 ~q~De~~lg~~Y~~lD~~l~~---------------------~~~~~~~~~~i~~~~---~~~~~Kr-~~p~~~~  269 (275)
T 1wxi_A          220 SLPDEVALGVTYDNIDDYLEG---------------------KNVPQQVARTIENWY---LKTEHKR-RPPITVF  269 (275)
T ss_dssp             ---CHHHHSSCHHHHHHHHTT---------------------CCCCHHHHHHHHHHH---HHTGGGG-SSCCCTT
T ss_pred             CCCCHHHhCCCHHHHHHHHHh---------------------cCCCHHHHHHHHHHH---HHhHHhc-CCCCCCc
Confidence            599999999999999999872                     234677888887765   9999999 6799876

>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}

Probab=98.90  E-value=1.3e-09  Score=87.25  Aligned_cols=69  Identities=20%  Similarity=0.135  Sum_probs=52.1

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccccCC
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYS   81 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~Ys   81 (152)
                      .|+||.+|||||++|+.|.+.....+++|-++...     . +++++    .|++|+++|.+|||||+ ++|..+..+.|
T Consensus       186 ~q~de~~lg~~y~~ld~~l~~~~~~~~~~~~i~~~-----~-~~~~~----~~~~~~~~~~~~~~kr~-~~~~~~~~~~~  254 (257)
T 2e18_A          186 GQTDEDELGISYNLLDEILWRMIDLKIGKEEIAKD-----L-GIPLS----LVERVEELIKKSEHKRR-LPIGPSFEDLI  254 (257)
T ss_dssp             TCCHHHHHTSCHHHHHHHHHHHHTSCCCHHHHHHT-----T-TCCHH----HHHHHHHHHHTTGGGSS-CCCCCCCGGGE
T ss_pred             CCcCHhhcCCCHHHHHHHHHHHHhcCCCHHHHHHH-----h-CCCHH----HHHHHHHHHHHhHhhcc-CCCCCCCCCCC
Confidence            49999999999999999988655555666665532     0 23332    47999999999999999 68888876543

>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0

Probab=98.67  E-value=1.2e-08  Score=85.14  Aligned_cols=50  Identities=22%  Similarity=0.516  Sum_probs=31.9

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCcc
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSY   75 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSf   75 (152)
                      .||||.+|||||++||.|..                     +.--++++.++|.+.+   .+|+|||..+|+-|
T Consensus       229 ~q~DE~~lg~~Y~~lD~~L~---------------------~~~~~~~~~~~i~~~~---~~~~hKr~~~p~~~  278 (279)
T 3q4g_A          229 QKADEAALNLTYEQIDDFLE---------------------GKAVPAEVSQRLVAIY---HATQHKRQPIPTIY  278 (279)
T ss_dssp             --------CCCHHHHHHHHH---------------------TCCCCHHHHHHHHHHH---HHTHHHHSCCCCTT
T ss_pred             CCCCHHHcCCCHHHHHHHHh---------------------cCCCCHHHHHHHHHHH---HHhHhccCCCCCCC
Confidence            49999999999999999986                     2224567777777776   99999998655433

>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0

Probab=98.54  E-value=4.1e-08  Score=82.42  Aligned_cols=45  Identities=31%  Similarity=0.527  Sum_probs=34.9

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhccccccc
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTV   70 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~   70 (152)
                      .||||.+|||||++||.|..                     +.--++++.++|.+.+   .+|+|||..
T Consensus       229 ~q~DE~~lg~~Y~~lD~~L~---------------------~~~~~~~~~~~i~~~~---~~~~hKR~~  273 (285)
T 3dpi_A          229 QRPDEHAYGITYEQIDDFLE---------------------GKPMDDAVAETVLRFY---DATRHKRAL  273 (285)
T ss_dssp             SCC--CCCCCCHHHHHHHHH---------------------TCSCCHHHHHHHHHHH---HHHHHHHHC
T ss_pred             CCCcHHHcCCCHHHHHHHHc---------------------CCCCCHHHHHHHHHHH---HHhhhcccC
Confidence            49999999999999999976                     2224567777887777   999999986

>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}

Probab=98.47  E-value=5.9e-08  Score=78.78  Aligned_cols=45  Identities=24%  Similarity=0.435  Sum_probs=36.8

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhccccccc
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTV   70 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~   70 (152)
                      .|+||.+|||||++||.|...                     +--++++.++|.+.+   .+|+|||..
T Consensus       199 ~q~de~~lg~~y~~ld~~l~~---------------------~~~~~~~~~~i~~~~---~~~~~Kr~~  243 (249)
T 3fiu_A          199 GQTDEDEMGVTYQEIDDFLDG---------------------KQVSAKALERINFWH---NRSHHKRKL  243 (249)
T ss_dssp             TCCHHHHHTSCHHHHHHHHHT---------------------CCCCHHHHHHHHHHH---HTTHHHHSC
T ss_pred             CCCCHHHcCCCHHHHHHHHhc---------------------CCCCHHHHHHHHHHH---HHhHhcccC
Confidence            499999999999999999871                     123567777777776   999999986

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}

Probab=98.43  E-value=2.7e-07  Score=82.37  Aligned_cols=70  Identities=13%  Similarity=0.054  Sum_probs=49.7

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccccCC
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYS   81 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~Ys   81 (152)
                      .|+||.+|| ||++||.|.+.....+++|-++...       +++++    .|+++.+++.+|+|||..+||..++.+.|
T Consensus       501 ~q~de~~l~-~Y~~~D~~l~~~~~~~~~~~~i~~~-------~~~~~----~v~~~~~~~~~~~~KR~~~p~~~~v~~~~  568 (590)
T 3n05_A          501 GQVDTDSLP-DYPVLDAILELYVDRDTGADAIVAA-------GYDRE----LVVKTLRMVDTAEYKRRQYPPGTKISAKG  568 (590)
T ss_dssp             ----------CHHHHHHHHHHHHTSCCCHHHHHHT-------TCCHH----HHHHHHHHHHHTHHHHHSSCCCCCCSSSS
T ss_pred             CCcCccccC-CHHHHHHHHHHHHHcCCCHHHHHHc-------CCCHH----HHHHHHHHHHhchhhhccCCCCceecCCC
Confidence            499999997 9999999999888888999998862       36654    34444555589999999999999999988


Q ss_pred             CC
Q 031818           82 PE   83 (152)
Q Consensus        82 pD   83 (152)
                      ..
T Consensus       569 ~~  570 (590)
T 3n05_A          569 FG  570 (590)
T ss_dssp             SC
T ss_pred             CC
Confidence            77

>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0

Probab=98.17  E-value=3.9e-07  Score=74.05  Aligned_cols=57  Identities=19%  Similarity=0.192  Sum_probs=29.3

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCc
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPS   74 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPS   74 (152)
                      .|+||.+|||||++||.|...-    .++-++    ...   +.+ +++.++|.+.+   .+|+|||. +||.
T Consensus       190 ~q~de~~lg~~y~~ld~~l~~~----~~~~~~----~~~---~~~-~~~~~~i~~~~---~~~~~kr~-~p~~  246 (249)
T 3p52_A          190 NQSDEADLGFSYTKIDEGLKAL----ETNDEK----LLR---TLD-PSLIAMLKNRM---QKNAFKGK-MPEI  246 (249)
T ss_dssp             ---------CCCCHHHHHHHHH----HTTCHH----HHH---HSC-HHHHHHHHHHH---HHTGGGGS-CCEE
T ss_pred             CCCCHHHcCCCHHHHHHHHHHc----cChHHH----HHc---CCC-HHHHHHHHHHH---HhhhhccC-CCCC
Confidence            4999999999999999988743    222222    111   123 34455555554   99999998 4664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	152
d1kqpa_	271	c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacil	3e-05

>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]} Length = 271

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: NH3-dependent NAD+-synthetase
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.3 bits (93), Expect = 3e-05
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 24/68 (35%)

Query: 3   QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
           Q DE ++G++Y+E+  Y   +++                      ++V+E ++   K YS
Sbjct: 218 QSDETELGISYDEIDDYLEGKEV---------------------SAKVSEALE---KRYS 253

Query: 63  INRHKMTV 70
           +  HK  V
Sbjct: 254 MTEHKRQV 261

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	152
d1kqpa_	271	NH3-dependent NAD+-synthetase {Bacillus subtilis [	98.93
d1wxia1	274	NH3-dependent NAD+-synthetase {Escherichia coli [T	98.87
d1xnga1	255	NH3-dependent NAD+-synthetase {Helicobacter pylori	98.63

>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: NH3-dependent NAD+-synthetase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.93  E-value=2e-10  Score=93.26  Aligned_cols=51  Identities=27%  Similarity=0.546  Sum_probs=39.6

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccc
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAE   78 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e   78 (152)
                      .||||.||||||++||.|.+                     +...+.++.++|++++   .+|+|||..  |..|.+
T Consensus       217 ~q~DE~~lg~~Y~~lD~~l~---------------------~~~~~~~~~~~i~~~~---~~~~hKR~~--P~~~f~  267 (271)
T d1kqpa_         217 QQSDETELGISYDEIDDYLE---------------------GKEVSAKVSEALEKRY---SMTEHKRQV--PASMFD  267 (271)
T ss_dssp             TCBHHHHHSSCHHHHHHHHT---------------------TCCCCHHHHHHHHHHH---HHTGGGGSS--CBCTTC
T ss_pred             CCCCHHhcCCCHHHHHHHHh---------------------ccCCCHHHHHHHHHHH---HHHHhccCC--CCCccc
Confidence            49999999999999999875                     3345677777777665   999999973  444543

>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: NH3-dependent NAD+-synthetase
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=4.8e-10  Score=91.15  Aligned_cols=52  Identities=25%  Similarity=0.506  Sum_probs=42.5

Q ss_pred             CCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccccC
Q 031818            3 QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESY   80 (152)
Q Consensus         3 QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~Y   80 (152)
                      ||||.+|||||++|+.|..                     ....|++++++|++++   .+|+|||.  +|.+|.++|
T Consensus       220 ~~DE~~lG~~Y~~lD~~l~---------------------~~~~~~~~~~~i~~~~---~~~~~KR~--~P~~~~~~~  271 (274)
T d1wxia1         220 LPDEVALGVTYDNIDDYLE---------------------GKNVPQQVARTIENWY---LKTEHKRR--PPITVFDDF  271 (274)
T ss_dssp             --CHHHHSSCHHHHHHHHT---------------------TCCCCHHHHHHHHHHH---HHTGGGGS--SCCCTTCCG
T ss_pred             CCCHHHhCCCHHHHHHHHH---------------------cCCCCHHHHHHHHHHH---HHHHhccC--CCCCCcChh
Confidence            6999999999999998764                     4567888999998876   99999997  688887665

>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: NH3-dependent NAD+-synthetase
species: Helicobacter pylori [TaxId: 210]

Probab=98.63  E-value=6.5e-09  Score=82.44  Aligned_cols=64  Identities=19%  Similarity=0.110  Sum_probs=41.4

Q ss_pred             CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCC
Q 031818            2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTP   73 (152)
Q Consensus         2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltP   73 (152)
                      -||||.||||||++||.|.+-......++......+...   ++++    +.|+++.+++.+|+|||. +||
T Consensus       187 ~q~de~~lg~~Y~~lD~~l~~~~~~~~~~~~~~~~~~~~---~~~~----~~v~~i~~~~~~~~~Kr~-~p~  250 (255)
T d1xnga1         187 GQSDEKDLGYPYSVIDPLLKDIEALFQTKPIDTETLAQL---GYDE----ILVKNITSRIQKNAFKLE-LPA  250 (255)
T ss_dssp             TCCHHHHHSSCHHHHHHHHHHHHHHSSSSCCCHHHHHHT---TCCH----HHHHHHHHHHHHTGGGGS-CCE
T ss_pred             ccCcHhhhCCChHHHHHHHHHHHhhcccccCCHHHHHHc---CCCH----HHHHHHHHHHHHhHhccc-CCC
Confidence            499999999999999998653333333433333333322   1332    345566666799999997 465