Citrus Sinensis ID: 031846

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSHMPTPPPTPPR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHcccccccEEEEEccHHHcHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MILDAISKLEEAlmvspnrhdtlwclgnahtshafltpdqdEAKEYFNKATLYFQQavdeepsneLYQKSLEVAAKAPELHMEIHKhglgqqtmgpstgpsstssgaktskkkkssdlkydiFGWVILAVGIVAWVGfakshmptppptppr
Flexible Loop (DISEMBL)
MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHglgqqtmgpstgpsstssgaktskkkkssdlkyDIFGWVILAVGIVAWVGFAKshmptppptppr
Low Complexity Region (SEG)
MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMgpstgpsstssgaktskkkkssDLKYDIFGWVILAVGIVAWVGFAKSHMptppptppR
Disordered region (IsUnstruct)
************LMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQA***********************************************************************************************
Disordered Region (DISOPRED)
*ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHM************************************KYDIFGWVILAVGIVAWVGFA*************
Disordered Region (DISEMBL)
MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQ***********************SDLKYDIFGWVILAVGIVAWVGFAKSH**********
Disordered Region (DISPRO)
MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQ************************SDLKYDIFGWVILAVGIVAWVGFAKSHMP********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSHMPTPPPTPPR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	152	2.2.26 [Sep-21-2011]
P92792	204	Mitochondrial import rece	N/A	no	0.921	0.686	0.755	1e-50
P82874	202	Mitochondrial import rece	yes	no	0.960	0.722	0.581	1e-45
Q5JJI4	202	Probable mitochondrial im	yes	no	0.934	0.702	0.570	5e-41
A2WYG9	201	Probable mitochondrial im	N/A	no	0.927	0.701	0.550	7e-41
P82873	210	Mitochondrial import rece	no	no	0.967	0.7	0.519	1e-40
P82805	187	Mitochondrial import rece	no	no	0.861	0.700	0.537	5e-38
P82872	188	Mitochondrial import rece	no	no	0.901	0.728	0.507	7e-33

>sp|P92792|TOM20_SOLTU Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 108/143 (75%), Positives = 117/143 (81%), Gaps = 3/143 (2%)

Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           MI DA SKLEEAL V+P +HD LWCLGNAHTSH FLTPD DEAK YF KAT  FQQA D 
Sbjct: 56  MISDATSKLEEALTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFDA 115

Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKY 120
           +PSN+LY+KSLEV AKAPELHMEIH+HG  QQTM       STS+  K+SKK KSSDLKY
Sbjct: 116 DPSNDLYRKSLEVTAKAPELHMEIHRHGPMQQTMA---AEPSTSTSTKSSKKTKSSDLKY 172

Query: 121 DIFGWVILAVGIVAWVGFAKSHM 143
           DIFGWVILAVGIVAWVGFAKS+M
Sbjct: 173 DIFGWVILAVGIVAWVGFAKSNM 195

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.
Solanum tuberosum (taxid: 4113)

>sp|P82874|TO203_ARATH Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis thaliana GN=TOM20-3 PE=1 SV=1

 Score =  181 bits (460), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/148 (58%), Positives = 109/148 (73%), Gaps = 2/148 (1%)

Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           MI +AI+K EEAL++ P + + +WC+GNA+TS AFLTPD+ EAK  F+ AT +FQQAVDE
Sbjct: 56  MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115

Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKY 120
           +P N  Y KSLE+ AKAP+LH E +K GLG Q MG    P+  SS  K  K KKSSD KY
Sbjct: 116 QPDNTHYLKSLEMTAKAPQLHAEAYKQGLGSQPMGRVEAPAPPSS--KAVKNKKSSDAKY 173

Query: 121 DIFGWVILAVGIVAWVGFAKSHMPTPPP 148
           D  GWVILA+G+VAW+ FAK+++P  PP
Sbjct: 174 DAMGWVILAIGVVAWISFAKANVPVSPP 201

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5JJI4|TOM20_ORYSJ Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. japonica GN=TOM20 PE=2 SV=1

 Score =  166 bits (420), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 85/149 (57%), Positives = 105/149 (70%), Gaps = 7/149 (4%)

Query: 4   DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63
           DA SKLEEAL + P + D LWCLGNA TSH F T D  +A E+F KAT  FQ+AVD EP+
Sbjct: 61  DAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPA 120

Query: 64  NELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKYDIF 123
           N+LY+KSL++++KAPELHMEIH+    Q     S   SSTS+  ++ KKKK SD  YD+F
Sbjct: 121 NDLYRKSLDLSSKAPELHMEIHR----QMASQASQAASSTSNTRQSRKKKKDSDFWYDVF 176

Query: 124 GWVILAVGIVAWVGFAKSHMPTPPPTPPR 152
           GWV+L VG+V WVG AKS+    PP  PR
Sbjct: 177 GWVVLGVGMVVWVGLAKSN---APPQAPR 202

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WYG9|TOM20_ORYSI Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. indica GN=TOM20 PE=2 SV=2

 Score =  166 bits (419), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 8/149 (5%)

Query: 4   DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63
           DA SKLEEAL + P + D LWCLGNA TSH F T D  +A E+F KAT  FQ+AVD EP+
Sbjct: 61  DAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPA 120

Query: 64  NELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKYDIF 123
           N+LY+KSL++++KAPELHMEIH+     Q    ++  +S++S  + S+KKK SD  YD+F
Sbjct: 121 NDLYRKSLDLSSKAPELHMEIHR-----QMASQASQAASSTSNTRQSRKKKDSDFWYDVF 175

Query: 124 GWVILAVGIVAWVGFAKSHMPTPPPTPPR 152
           GWV+L VG+V WVG AKS+    PP  PR
Sbjct: 176 GWVVLGVGMVVWVGLAKSN---APPQAPR 201

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P82873|TO202_ARATH Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis thaliana GN=TOM20-2 PE=1 SV=2

 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/152 (51%), Positives = 109/152 (71%), Gaps = 5/152 (3%)

Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           M+ DAISKLEEAL ++P +H  LWC+ NA+T+HAF   D +EAKE+F+KAT YFQ+A +E
Sbjct: 57  MLNDAISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENE 116

Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGP-----SSTSSGAKTSKKKKS 115
           +P N+ Y+KSL+ + KAPELHM+    G+GQQ +G   G      +S++    + KKK++
Sbjct: 117 DPGNDTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGGGGGGMASSNVSQSSKKKKRN 176

Query: 116 SDLKYDIFGWVILAVGIVAWVGFAKSHMPTPP 147
           ++  YD+ GW+ILA GIVAWVG AKS  P PP
Sbjct: 177 TEFTYDVCGWIILACGIVAWVGMAKSLGPPPP 208

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Arabidopsis thaliana (taxid: 3702)

>sp|P82805|TO204_ARATH Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis thaliana GN=TOM20-4 PE=1 SV=1

 Score =  156 bits (394), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 100/145 (68%), Gaps = 14/145 (9%)

Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           MIL+AI KL EAL++ P +HD LW +GNAH S  FL+ DQ EA + F KA+ +FQ AV+E
Sbjct: 54  MILEAILKLGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEE 113

Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKY 120
           +P +ELY+KSL +A+KAPELH             G + GPSS S  AKT K+KK+S+ KY
Sbjct: 114 QPESELYRKSLTLASKAPELH------------TGGTAGPSSNS--AKTMKQKKTSEFKY 159

Query: 121 DIFGWVILAVGIVAWVGFAKSHMPT 145
           D+FGWVILA  +VAW+ FA S  P 
Sbjct: 160 DVFGWVILASYVVAWISFANSQTPV 184

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Arabidopsis thaliana (taxid: 3702)

>sp|P82872|TO201_ARATH Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis thaliana GN=TOM20-1 PE=1 SV=1

 Score =  139 bits (350), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 71/140 (50%), Positives = 94/140 (67%), Gaps = 3/140 (2%)

Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           MI DAISKLE+A+++ P +HD +WCLGNA+TS+A LTPD  +A+  F  A L+F  AV +
Sbjct: 50  MIQDAISKLEDAILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAVAQ 109

Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKY 120
           +P N++Y KSLE+A KAP+LH   HK+ L     G  T    +    K  K KKSSD KY
Sbjct: 110 QPDNQVYHKSLEMADKAPQLHTGFHKNRLLSLLGGVETLAIPSP---KVVKNKKSSDEKY 166

Query: 121 DIFGWVILAVGIVAWVGFAK 140
            + GWVILA+G+VA + F K
Sbjct: 167 IVMGWVILAIGVVACISFRK 186

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
225451445	201	PREDICTED: mitochondrial import receptor	0.953	0.721	0.817	5e-58
359806671	210	uncharacterized protein LOC100819858 [Gl	1.0	0.723	0.759	1e-56
255536895	205	Mitochondrial import receptor subunit TO	0.967	0.717	0.76	7e-56
388503852	212	unknown [Medicago truncatula]	0.907	0.650	0.764	2e-55
449455850	201	PREDICTED: mitochondrial import receptor	0.953	0.721	0.690	2e-53
356566216	201	PREDICTED: mitochondrial import receptor	0.947	0.716	0.682	5e-53
224057709	200	predicted protein [Populus trichocarpa]	0.947	0.72	0.697	3e-52
116784454	205	unknown [Picea sitchensis]	0.947	0.702	0.673	6e-52
224072604	200	predicted protein [Populus trichocarpa]	0.940	0.715	0.707	7e-52
116779285	206	unknown [Picea sitchensis] gi|224285654|	0.907	0.669	0.671	6e-50

>gi|225451445|ref|XP_002269795.1| PREDICTED: mitochondrial import receptor subunit TOM20 [Vitis vinifera] gi|296082346|emb|CBI21351.3| unnamed protein product [Vitis vinifera]

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 121/148 (81%), Positives = 134/148 (90%), Gaps = 3/148 (2%)

Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           MI DAISKLEEALM++PN+HDTLWCLGNAHTSHAFLTPDQDEA++YF+KA+ YFQQAVDE
Sbjct: 56  MIQDAISKLEEALMLNPNKHDTLWCLGNAHTSHAFLTPDQDEARDYFDKASQYFQQAVDE 115

Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKY 120
           +P N+LY+KSLEVAAKAPELHMEIHK G  QQ MG     SSTS+G KTSKKKKSSDLKY
Sbjct: 116 DPGNDLYRKSLEVAAKAPELHMEIHKQGFSQQAMG---AGSSTSTGTKTSKKKKSSDLKY 172

Query: 121 DIFGWVILAVGIVAWVGFAKSHMPTPPP 148
           DIFGW+ILAVGIVAWVGFAKSH+P PPP
Sbjct: 173 DIFGWIILAVGIVAWVGFAKSHVPPPPP 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806671|ref|NP_001241027.1| uncharacterized protein LOC100819858 [Glycine max] gi|255647408|gb|ACU24169.1| unknown [Glycine max]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 117/154 (75%), Positives = 130/154 (84%), Gaps = 2/154 (1%)

Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           M  +A+SKLEEAL V+P +HDTLWCLGNAHTS AFL PDQDEAK YF+KA  YFQQAVDE
Sbjct: 57  MTQEAVSKLEEALAVNPKKHDTLWCLGNAHTSQAFLIPDQDEAKVYFDKAAEYFQQAVDE 116

Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLG--QQTMGPSTGPSSTSSGAKTSKKKKSSDL 118
           +PSNELY+KSLEVAAKAPELH+EIHKHG G  QQ    +T  SSTS+   T KKKKSSDL
Sbjct: 117 DPSNELYRKSLEVAAKAPELHVEIHKHGFGQQQQQQAAATAGSSTSASTNTQKKKKSSDL 176

Query: 119 KYDIFGWVILAVGIVAWVGFAKSHMPTPPPTPPR 152
           KYDIFGW+ILAVGIVAWVGFAKS++P PPP PPR
Sbjct: 177 KYDIFGWIILAVGIVAWVGFAKSNLPPPPPPPPR 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536895|ref|XP_002509514.1| Mitochondrial import receptor subunit TOM20, putative [Ricinus communis] gi|223549413|gb|EEF50901.1| Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]

 Score =  221 bits (563), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 114/150 (76%), Positives = 131/150 (87%), Gaps = 3/150 (2%)

Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           MILD I+KLEEAL++ P +HDTLWC+GNAHTS AFLTPD DEAKE F+KAT+YFQQAV+E
Sbjct: 56  MILDGITKLEEALLIQPKKHDTLWCIGNAHTSFAFLTPDLDEAKESFDKATVYFQQAVEE 115

Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMG--PSTGPSSTSSGAKTSKKKKSSDL 118
           +P NELY+KSLEVAAKAPELHMEIH+HGLGQQ MG  P++GPS++SS   + KKK S  L
Sbjct: 116 DPENELYRKSLEVAAKAPELHMEIHRHGLGQQAMGAAPASGPSTSSSAKTSKKKKDSD-L 174

Query: 119 KYDIFGWVILAVGIVAWVGFAKSHMPTPPP 148
           KYDIFGWVILAVGIVAW+GFAKS MP PPP
Sbjct: 175 KYDIFGWVILAVGIVAWIGFAKSQMPPPPP 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503852|gb|AFK39992.1| unknown [Medicago truncatula]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/140 (76%), Positives = 120/140 (85%), Gaps = 2/140 (1%)

Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           M LDAISKLEEAL V+PN+H  LWCLGNA TS AFL PD DEAK YF+KA +YFQQA+DE
Sbjct: 57  MTLDAISKLEEALSVNPNKHGALWCLGNALTSQAFLNPDVDEAKVYFDKAAVYFQQAIDE 116

Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKY 120
           +PSNELY+KSLEVAAKAPELH+EIHKHGLGQQ +  + GP S S+G KT KKKK+SD+KY
Sbjct: 117 DPSNELYRKSLEVAAKAPELHVEIHKHGLGQQAV-EAAGP-SFSAGIKTQKKKKNSDMKY 174

Query: 121 DIFGWVILAVGIVAWVGFAK 140
           DI GWVILAVGIV WVGFAK
Sbjct: 175 DILGWVILAVGIVTWVGFAK 194

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455850|ref|XP_004145663.1| PREDICTED: mitochondrial import receptor subunit TOM20-like [Cucumis sativus] gi|449502020|ref|XP_004161521.1| PREDICTED: mitochondrial import receptor subunit TOM20-like [Cucumis sativus]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/152 (69%), Positives = 129/152 (84%), Gaps = 7/152 (4%)

Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           MILD+ISKLEEALM++P +HD LWCLGNA+TSHAFL P+QDEAKE+F+KAT+YF+QAV+E
Sbjct: 57  MILDSISKLEEALMINPKKHDALWCLGNAYTSHAFLNPNQDEAKEFFDKATIYFKQAVEE 116

Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKY 120
           +P NE+Y KSLEV AKAPELH+EIHKHG  QQ  G     ++  S + ++KKK SSDLKY
Sbjct: 117 DPGNEIYLKSLEVTAKAPELHLEIHKHGFAQQATG-----AAEPSASSSTKKKNSSDLKY 171

Query: 121 DIFGWVILAVGIVAWVGFAKSHMPTPPPTPPR 152
           D+FGW+ILAVG+VAWVGFAKS++  PPPT PR
Sbjct: 172 DLFGWIILAVGLVAWVGFAKSNV--PPPTAPR 201

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566216|ref|XP_003551330.1| PREDICTED: mitochondrial import receptor subunit TOM20-like [Glycine max]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 101/148 (68%), Positives = 122/148 (82%), Gaps = 4/148 (2%)

Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           MI DA+SKLEEAL+++P +HDTLWCLGNA+TS+AFL PD  EAK YF+KA  YFQ+AVDE
Sbjct: 57  MIDDALSKLEEALLINPTKHDTLWCLGNANTSYAFLIPDITEAKGYFDKALDYFQKAVDE 116

Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKY 120
           +P N+LY+KSL+VA KAPELHMEIHK+GLG      S   SS +S  K SK++KS+D KY
Sbjct: 117 DPENDLYRKSLQVAIKAPELHMEIHKNGLGLM----SNAGSSATSKEKESKRQKSNDFKY 172

Query: 121 DIFGWVILAVGIVAWVGFAKSHMPTPPP 148
           DIFGW+ILAVGIVAWVG AKS++P PPP
Sbjct: 173 DIFGWIILAVGIVAWVGMAKSNIPPPPP 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057709|ref|XP_002299299.1| predicted protein [Populus trichocarpa] gi|118481274|gb|ABK92583.1| unknown [Populus trichocarpa] gi|222846557|gb|EEE84104.1| predicted protein [Populus trichocarpa]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/152 (69%), Positives = 122/152 (80%), Gaps = 8/152 (5%)

Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           MI DAISKLEEALM++P  +  +W +GNA+TS+AFLTPD DEAK YF+KA  YFQQAVDE
Sbjct: 57  MINDAISKLEEALMLNPTSN-AMWSIGNANTSYAFLTPDLDEAKSYFDKAANYFQQAVDE 115

Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKY 120
           +P+NELY+KSLEV AKAPELH EIHKH   QQ MG   G S+ SS AK SKKK +SDLKY
Sbjct: 116 DPNNELYRKSLEVCAKAPELHTEIHKHSSSQQIMG--GGGSTASSNAKGSKKKTNSDLKY 173

Query: 121 DIFGWVILAVGIVAWVGFAKSHMPTPPPTPPR 152
           DIFGW+ILAVGIVAWVG AKS++P     PPR
Sbjct: 174 DIFGWIILAVGIVAWVGMAKSNVP-----PPR 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116784454|gb|ABK23348.1| unknown [Picea sitchensis]

 Score =  208 bits (530), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 99/147 (67%), Positives = 118/147 (80%), Gaps = 3/147 (2%)

Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           M+ DA+SKLEEAL VSPN+HDTLWCLGNAHTSHAFL P+ + AK YF  A+ YFQQAV++
Sbjct: 60  MVKDAVSKLEEALKVSPNKHDTLWCLGNAHTSHAFLIPEHEVAKIYFRMASQYFQQAVEQ 119

Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKY 120
           +P+NELYQKSLE+  KAPELH+E+HK     Q++      SST S  K SKKKK+SDLKY
Sbjct: 120 DPTNELYQKSLELTEKAPELHLEVHKQIFNPQSVAAG---SSTVSNLKGSKKKKNSDLKY 176

Query: 121 DIFGWVILAVGIVAWVGFAKSHMPTPP 147
           DI GW++LAVGIVAWVG AKSH+P PP
Sbjct: 177 DIMGWIVLAVGIVAWVGMAKSHVPPPP 203

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072604|ref|XP_002303802.1| predicted protein [Populus trichocarpa] gi|222841234|gb|EEE78781.1| predicted protein [Populus trichocarpa]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 104/147 (70%), Positives = 120/147 (81%), Gaps = 4/147 (2%)

Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           MI +AISKLEEA+M++P   + +W +GNA+TS+AFLTPD  EAK YF+KA  YFQQAVDE
Sbjct: 57  MINEAISKLEEAMMLNPTA-NAMWSIGNANTSYAFLTPDLSEAKNYFDKAADYFQQAVDE 115

Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKY 120
           + +NELY KSLEV AKAPELHMEIHKH   QQTMG   G SS SS AK SKKK +SDLKY
Sbjct: 116 DSTNELYHKSLEVCAKAPELHMEIHKHSSSQQTMG---GESSPSSNAKGSKKKANSDLKY 172

Query: 121 DIFGWVILAVGIVAWVGFAKSHMPTPP 147
           DIFGW+ILAVGIVAW+G AKSH+P PP
Sbjct: 173 DIFGWIILAVGIVAWMGIAKSHVPPPP 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116779285|gb|ABK21218.1| unknown [Picea sitchensis] gi|224285654|gb|ACN40543.1| unknown [Picea sitchensis]

 Score =  201 bits (512), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 96/143 (67%), Positives = 115/143 (80%), Gaps = 5/143 (3%)

Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           M+ DA+SKLEEAL ++P +HDTLWCLGNAHTSHAFLTP+ + AK YF KA+  FQQAVD+
Sbjct: 60  MVNDAVSKLEEALKINPTKHDTLWCLGNAHTSHAFLTPEHEIAKIYFKKASHCFQQAVDQ 119

Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKY 120
           EP+NELY+KSLE+  KAPELH+E+HK     Q   P +G SS  S  K SKKKK+SDLKY
Sbjct: 120 EPANELYRKSLELNEKAPELHLEVHK-----QMFNPQSGGSSAGSNLKGSKKKKNSDLKY 174

Query: 121 DIFGWVILAVGIVAWVGFAKSHM 143
           DI GW++LAVGIVAWVG AKSH+
Sbjct: 175 DILGWIVLAVGIVAWVGMAKSHV 197

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
TAIR|locus:2092045	202	TOM20-3 "AT3G27080" [Arabidops	0.927	0.698	0.510	1.5e-35
TAIR|locus:2015904	210	TOM20-2 "AT1G27390" [Arabidops	0.927	0.671	0.479	9.5e-34
TAIR|locus:2167737	187	TOM20-4 "AT5G40930" [Arabidops	0.835	0.679	0.453	2.2e-27

TAIR|locus:2092045 TOM20-3 "AT3G27080" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 73/143 (51%), Positives = 95/143 (66%)

Query:     1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
             MI +AI+K EEAL++ P + + +WC+GNA+TS AFLTPD+ EAK  F+ AT +FQQAVDE
Sbjct:    56 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115

Query:    61 EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXXXXXXXXXXXXXXXXXDLKY 120
             +P N  Y KSLE+ AKAP+LH E +K GLG Q M                      D KY
Sbjct:   116 QPDNTHYLKSLEMTAKAPQLHAEAYKQGLGSQPMGRVEAPAPPSSKAVKNKKSS--DAKY 173

Query:   121 DIFGWVILAVGIVAWVGFAKSHM 143
             D  GWVILA+G+VAW+ FAK+++
Sbjct:   174 DAMGWVILAIGVVAWISFAKANV 196

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0045040 "protein import into mitochondrial outer membrane" evidence=IEA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;IMP;TAS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IDA;TAS

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2015904 TOM20-2 "AT1G27390" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 70/146 (47%), Positives = 93/146 (63%)

Query:     1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
             M+ DAISKLEEAL ++P +H  LWC+ NA+T+HAF   D +EAKE+F+KAT YFQ+A +E
Sbjct:    57 MLNDAISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENE 116

Query:    61 EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXXXXXXXXXXXXXXXX----- 115
             +P N+ Y+KSL+ + KAPELHM+    G+GQQ +                          
Sbjct:   117 DPGNDTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGGGGGGMASSNVSQSSKKKKRN 176

Query:   116 XDLKYDIFGWVILAVGIVAWVGFAKS 141
              +  YD+ GW+ILA GIVAWVG AKS
Sbjct:   177 TEFTYDVCGWIILACGIVAWVGMAKS 202

GO:0005739 "mitochondrion" evidence=ISM;IEA;IDA

GO:0045040 "protein import into mitochondrial outer membrane" evidence=IEA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;IMP;TAS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=TAS

GO:0046872 "metal ion binding" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2167737 TOM20-4 "AT5G40930" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 64/141 (45%), Positives = 83/141 (58%)

Query:     1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
             MIL+AI KL EAL++ P +HD LW +GNAH S  FL+ DQ EA + F KA+ +FQ AV+E
Sbjct:    54 MILEAILKLGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEE 113

Query:    61 EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXXXXXXXXXXXXXXXXXDLKY 120
             +P +ELY+KSL +A+KAPELH                                   + KY
Sbjct:   114 QPESELYRKSLTLASKAPELH--------------TGGTAGPSSNSAKTMKQKKTSEFKY 159

Query:   121 DIFGWVILAVGIVAWVGFAKS 141
             D+FGWVILA  +VAW+ FA S
Sbjct:   160 DVFGWVILASYVVAWISFANS 180


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      152       122   0.00091  102 3  11 22  0.50    30
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  138 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.90u 0.13s 14.03t   Elapsed:  00:00:01
  Total cpu time:  13.90u 0.13s 14.03t   Elapsed:  00:00:01
  Start:  Fri May 10 03:56:22 2013   End:  Fri May 10 03:56:23 2013

GO:0005739 "mitochondrion" evidence=ISM;IEA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;IMP;TAS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=TAS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P92792	TOM20_SOLTU	No assigned EC number	0.7552	0.9210	0.6862	N/A	no
P82874	TO203_ARATH	No assigned EC number	0.5810	0.9605	0.7227	yes	no
Q5JJI4	TOM20_ORYSJ	No assigned EC number	0.5704	0.9342	0.7029	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00037854001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (201 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00005744001	SubName- Full=Chromosome chr3 scaffold_157, whole genome shotgun sequence; (309 aa)					•		•		0.526
	GSVIVG00001535001	SubName- Full=Chromosome chr11 scaffold_118, whole genome shotgun sequence; (326 aa)							•		0.441

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	152
pfam06552	186	pfam06552, TOM20_plant, Plant specific mitochondri	1e-70

>gnl|CDD|191555 pfam06552, TOM20_plant, Plant specific mitochondrial import receptor subunit TOM20

 Score =  210 bits (536), Expect = 1e-70
 Identities = 97/140 (69%), Positives = 113/140 (80%), Gaps = 3/140 (2%)

Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           MI DAISKLEEAL+++P +HD LWC+GNA+TS AFLTPD  EAKE F+KAT +FQQAVDE
Sbjct: 50  MINDAISKLEEALVINPKKHDALWCIGNAYTSFAFLTPDPTEAKENFDKATQFFQQAVDE 109

Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKY 120
           +P N+LY+KSLE+AAKAPELH E HK GLG Q MG    PSS S   KT K KKSSD KY
Sbjct: 110 QPDNDLYRKSLEMAAKAPELHTEFHKQGLGSQIMG-GEAPSSPSQ--KTVKNKKSSDFKY 166

Query: 121 DIFGWVILAVGIVAWVGFAK 140
           D+ GWVILA+G+VAW+ FAK
Sbjct: 167 DVMGWVILAIGVVAWISFAK 186

This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria. Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	152
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	100.0
KOG0553	304	consensus TPR repeat-containing protein [General f	99.41
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.21
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.19
PRK15359	144	type III secretion system chaperone protein SscB;	99.08
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.06
PRK15359	144	type III secretion system chaperone protein SscB;	99.04
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.04
PF13371	73	TPR_9: Tetratricopeptide repeat	98.96
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.9
PRK11189	296	lipoprotein NlpI; Provisional	98.88
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.86
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.85
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.85
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.79
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.76
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.72
PRK12370	553	invasion protein regulator; Provisional	98.71
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.7
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.69
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.68
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.67
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.64
PRK12370	553	invasion protein regulator; Provisional	98.62
PRK11189	296	lipoprotein NlpI; Provisional	98.6
KOG1126	638	consensus DNA-binding cell division cycle control	98.59
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.59
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.59
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.59
KOG0553	304	consensus TPR repeat-containing protein [General f	98.54
PF13431	34	TPR_17: Tetratricopeptide repeat	98.54
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.49
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.48
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.42
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.42
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.42
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.42
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.4
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.38
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.38
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.35
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.32
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.32
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.32
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.3
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.3
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.28
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.27
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.25
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.24
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.24
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.22
PF13428	44	TPR_14: Tetratricopeptide repeat	98.21
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.21
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.2
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.18
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.17
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.12
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.1
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.08
KOG1126	638	consensus DNA-binding cell division cycle control	98.06
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.06
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.05
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.04
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.03
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.03
PRK10803	263	tol-pal system protein YbgF; Provisional	98.03
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.98
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	97.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.94
KOG1125	579	consensus TPR repeat-containing protein [General f	97.91
PLN02789	320	farnesyltranstransferase	97.89
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.89
PLN02789	320	farnesyltranstransferase	97.89
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.88
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.88
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.88
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.87
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.85
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	97.84
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.84
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.8
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.8
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.8
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.78
PRK10803	263	tol-pal system protein YbgF; Provisional	97.75
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.73
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.73
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.69
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.68
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.64
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.63
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.62
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.61
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.6
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.59
KOG1125	579	consensus TPR repeat-containing protein [General f	97.59
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.59
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.57
KOG2076	895	consensus RNA polymerase III transcription factor	97.52
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.47
PRK11906	458	transcriptional regulator; Provisional	97.46
PRK14574	822	hmsH outer membrane protein; Provisional	97.44
PRK15331	165	chaperone protein SicA; Provisional	97.41
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.4
KOG3364	149	consensus Membrane protein involved in organellar	97.39
KOG4234	271	consensus TPR repeat-containing protein [General f	97.38
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.35
PRK11906	458	transcriptional regulator; Provisional	97.32
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.25
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.2
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.17
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.15
PF12688	120	TPR_5: Tetratrico peptide repeat	97.15
PF13428	44	TPR_14: Tetratricopeptide repeat	97.05
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.05
PRK15331	165	chaperone protein SicA; Provisional	96.99
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.96
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.95
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.9
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	96.88
PF13512	142	TPR_18: Tetratricopeptide repeat	96.82
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.82
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.81
KOG1128	777	consensus Uncharacterized conserved protein, conta	96.79
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.78
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.77
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	96.69
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.68
KOG2003	840	consensus TPR repeat-containing protein [General f	96.62
KOG4234	271	consensus TPR repeat-containing protein [General f	96.59
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.58
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	96.58
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.55
KOG4555	175	consensus TPR repeat-containing protein [Function	96.46
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.44
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.35
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	96.32
PF13371	73	TPR_9: Tetratricopeptide repeat	96.3
PRK14574	822	hmsH outer membrane protein; Provisional	96.28
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.18
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.16
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	96.05
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.04
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.01
KOG2076	895	consensus RNA polymerase III transcription factor	95.99
PF13512	142	TPR_18: Tetratricopeptide repeat	95.98
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.97
KOG1129	478	consensus TPR repeat-containing protein [General f	95.97
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	95.91
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	95.89
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.84
KOG1129	478	consensus TPR repeat-containing protein [General f	95.84
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.82
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.82
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	95.8
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	95.74
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	95.73
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	95.72
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	95.68
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.64
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	95.54
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.51
PF12688	120	TPR_5: Tetratrico peptide repeat	95.51
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.44
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	95.38
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	95.34
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.24
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	95.15
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.1
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.06
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.04
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	94.92
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.88
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	94.85
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	94.8
PF13431	34	TPR_17: Tetratricopeptide repeat	94.58
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	94.12
KOG1128	777	consensus Uncharacterized conserved protein, conta	94.12
COG4783	484	Putative Zn-dependent protease, contains TPR repea	93.98
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	93.92
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	93.87
KOG4340	459	consensus Uncharacterized conserved protein [Funct	93.85
KOG4648	536	consensus Uncharacterized conserved protein, conta	93.83
PRK10941	269	hypothetical protein; Provisional	93.81
KOG2003	840	consensus TPR repeat-containing protein [General f	93.73
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	93.71
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	93.17
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	93.11
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.0
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	92.95
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	92.7
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.69
KOG1586	288	consensus Protein required for fusion of vesicles	92.58
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	92.03
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	91.83
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	91.65
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	91.62
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	91.54
PF04212	69	MIT: MIT (microtubule interacting and transport) d	91.42
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	91.25
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	91.24
PF08238	39	Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r	91.2
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.19
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	91.05
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	90.91
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	90.75
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	90.55
PF03704	146	BTAD: Bacterial transcriptional activator domain;	90.4
COG4105	254	ComL DNA uptake lipoprotein [General function pred	90.32
cd02656	75	MIT MIT: domain contained within Microtubule Inter	90.24
PTZ00441	576	sporozoite surface protein 2 (SSP2); Provisional	90.22
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	90.2
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	90.15
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	89.75
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	89.65
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	89.39
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	89.13
COG4105	254	ComL DNA uptake lipoprotein [General function pred	88.58
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.53
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	88.46
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	88.14
KOG2471	696	consensus TPR repeat-containing protein [General f	88.13
KOG4555	175	consensus TPR repeat-containing protein [Function	87.9
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	87.57
PLN03218	1060	maturation of RBCL 1; Provisional	87.37
KOG1310	758	consensus WD40 repeat protein [General function pr	87.21
PLN03077	857	Protein ECB2; Provisional	86.74
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	86.71
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	86.48
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	86.21
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	86.12
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	85.4
PLN03218	1060	maturation of RBCL 1; Provisional	84.72
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	84.71
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	84.44
KOG0495	913	consensus HAT repeat protein [RNA processing and m	84.42
PRK04841	903	transcriptional regulator MalT; Provisional	84.34
PLN03077	857	Protein ECB2; Provisional	83.44
KOG4340	459	consensus Uncharacterized conserved protein [Funct	83.37
PF12309	371	KBP_C: KIF-1 binding protein C terminal; InterPro:	83.36
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	83.03
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	82.98
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	81.37
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	81.29
COG4700	251	Uncharacterized protein conserved in bacteria cont	81.0
KOG0529	421	consensus Protein geranylgeranyltransferase type I	80.54

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=100.00  E-value=3.1e-61  Score=388.64  Aligned_cols=137  Identities=80%  Similarity=1.221  Sum_probs=81.5

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchh
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL   80 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel   80 (152)
                      ||+|||++|++||.|||++|+|+|||||||++++|++||..+|++.|++|.+||++|+++||+|++||++|+|+.|||||
T Consensus        50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~l  129 (186)
T PF06552_consen   50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPEL  129 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhccCCCCCCCCCCCCCCCccccccccCCCchhhhhhHHHHHHHHHHHHHhhh
Q 031846           81 HMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKYDIFGWVILAVGIVAWVGFAK  140 (152)
Q Consensus        81 ~~e~~~~~~~q~~~~~~~~~~~~~~~~~~~~~k~~sd~~ydv~gw~il~~~iv~wv~~a~  140 (152)
                      |+|||||+++||++|   ++++++++.|++||||+|||||||+|||||++|||+||||||
T Consensus       130 h~e~~~~~~~~q~~~---~~~~~~~~~~~~k~kk~sd~~ydv~gwvil~~givawv~~ak  186 (186)
T PF06552_consen  130 HMEIHKQGLGQQAMG---GASSSSSSAKSSKKKKSSDFKYDVFGWVILAVGIVAWVGMAK  186 (186)
T ss_dssp             HHHHHHSSS---------------------------------------------------
T ss_pred             HHHHHHHHhhhhhcc---CCCCCCCCccccccccccchhhhhcchHHHHHHHHHHHhhcC
Confidence            999999999999864   346666777899999999999999999999999999999997

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.41  E-value=3.8e-13  Score=116.05  Aligned_cols=67  Identities=25%  Similarity=0.370  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCc
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAP   78 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kap   78 (152)
                      |+++||..++.||.|||.+..||..||.||+.+|           +|++|++.|+|||++||+|+.|+..|+.+++..
T Consensus       130 ~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g-----------k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l  196 (304)
T KOG0553|consen  130 EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG-----------KYEEAIEAYKKALELDPDNESYKSNLKIAEQKL  196 (304)
T ss_pred             chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC-----------cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence            6889999999999999999999999999999865           999999999999999999999999999987654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.21  E-value=3.5e-11  Score=78.88  Aligned_cols=51  Identities=25%  Similarity=0.410  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP   62 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP   62 (152)
                      +++|+..|++||++||++..+|+++|.+|..+|          +++++|+.+|++|+++||
T Consensus        19 ~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~----------~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   19 YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG----------KDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT----------THHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC----------ccHHHHHHHHHHHHHcCc
Confidence            789999999999999999999999999999753          279999999999999999

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.19  E-value=5.8e-11  Score=77.33  Aligned_cols=53  Identities=25%  Similarity=0.502  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|+++|+.+|++.++++.||.++..+|           ++++|+.+|+++++++|+|+
T Consensus        13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG-----------RYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCCC
Confidence            689999999999999999999999999999865           99999999999999999985

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.08  E-value=5.6e-10  Score=84.63  Aligned_cols=53  Identities=13%  Similarity=0.146  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|++++.++|.+.++|++||.++..+           +++++|+.+|++|++++|++.
T Consensus        40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-----------g~~~~A~~~y~~Al~l~p~~~   92 (144)
T PRK15359         40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWMML-----------KEYTTAINFYGHALMLDASHP   92 (144)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHhcCCCCc
Confidence            56777777777777777777777777777754           477777777777777777774

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.06  E-value=5.3e-10  Score=72.82  Aligned_cols=60  Identities=23%  Similarity=0.373  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   72 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe   72 (152)
                      +++|+..|++++..+|++.++++.|+.+|...|           ++++|..++++++..+|+|+.|+..+.
T Consensus         7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQG-----------QYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT------------HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            689999999999999999999999999999865           999999999999999999999887764

...

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.04  E-value=1.5e-09  Score=82.36  Aligned_cols=63  Identities=17%  Similarity=0.127  Sum_probs=56.6

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   74 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~   74 (152)
                      .+++|+..|++|++++|++.+++++||.+|..+|           ++++|+.+|++|++++|+|..|...+..+
T Consensus        73 ~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g-----------~~~eAi~~~~~Al~~~p~~~~~~~~~~~~  135 (144)
T PRK15359         73 EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG-----------EPGLAREAFQTAIKMSYADASWSEIRQNA  135 (144)
T ss_pred             hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            3789999999999999999999999999999765           99999999999999999998877666544

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.04  E-value=4.6e-10  Score=105.69  Aligned_cols=81  Identities=25%  Similarity=0.379  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      +.+||.+|++|++|||+..+||+||||+|...           ..|++|+.||+||+.+.|++.                
T Consensus       234 i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~-----------~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~l  302 (966)
T KOG4626|consen  234 IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEA-----------RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLL  302 (966)
T ss_pred             HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHH-----------hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccH
Confidence            67899999999999999999999999999864           489999999999999999884                


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHHhhhccCC
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHKHGLGQQT   93 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~~~~~q~~   93 (152)
                           .|+++|++.+.-|+.+-++.+.+-..|.
T Consensus       303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~  335 (966)
T KOG4626|consen  303 DLAIDTYKRALELQPNFPDAYNNLANALKDKGS  335 (966)
T ss_pred             HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccc
Confidence                 5999999999999999999888866654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.96  E-value=4.1e-09  Score=69.46  Aligned_cols=62  Identities=15%  Similarity=0.146  Sum_probs=56.5

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV   73 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~   73 (152)
                      .+++|+..++++|+++|+++.+++.+|.+|...|           +|++|+++|+++++++|++........+
T Consensus        10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g-----------~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen   10 DYEEALEVLERALELDPDDPELWLQRARCLFQLG-----------RYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc-----------cHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            3789999999999999999999999999999864           9999999999999999999887766654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.90  E-value=9.5e-09  Score=82.17  Aligned_cols=54  Identities=17%  Similarity=0.223  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      .++++..|+++|+.||++.++|+.||.+|...           +++++|+.+|++|++++|+|..
T Consensus        55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~-----------g~~~~A~~a~~~Al~l~P~~~~  108 (198)
T PRK10370         55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWR-----------NDYDNALLAYRQALQLRGENAE  108 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHhCCCCHH
Confidence            47899999999999999999999999999875           4999999999999999999963

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.88  E-value=4.8e-09  Score=87.64  Aligned_cols=53  Identities=23%  Similarity=0.276  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|++||+++|+++++|++||.+|...|           ++++|+++|++|++++|++.
T Consensus        80 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~Al~l~P~~~  132 (296)
T PRK11189         80 RALARNDFSQALALRPDMADAYNYLGIYLTQAG-----------NFDAAYEAFDSVLELDPTYN  132 (296)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCH
Confidence            578999999999999999999999999998765           99999999999999999986

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.86  E-value=1.3e-08  Score=87.95  Aligned_cols=74  Identities=18%  Similarity=0.195  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      +++|+..|++||+++|++..+|+++|.+|..+|           ++++|+.+|++||+++|++.                
T Consensus        18 ~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g-----------~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088         18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLG-----------NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence            567777777777777777777777777777654           77777777777777777764                


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHH
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHK   86 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~   86 (152)
                           .|++++++.+..++++..+.+
T Consensus        87 ~eA~~~~~~al~l~P~~~~~~~~l~~  112 (356)
T PLN03088         87 QTAKAALEKGASLAPGDSRFTKLIKE  112 (356)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                 355556666666666665555

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.85  E-value=1.1e-08  Score=73.69  Aligned_cols=53  Identities=11%  Similarity=0.101  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|++++.++|++.++++++|.+|...           +++++|+.+|+++++++|++.
T Consensus        33 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~   85 (135)
T TIGR02552        33 YDEALKLFQLLAAYDPYNSRYWLGLAACCQML-----------KEYEEAIDAYALAAALDPDDP   85 (135)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhcCCCCh
Confidence            56778888888888888888888888877753           477777777777777777774

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.85  E-value=8.1e-09  Score=97.48  Aligned_cols=80  Identities=26%  Similarity=0.255  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      +|-||..|++||+++|+..+||.||+||+...|           +..+|.+||.+||.++|+|.                
T Consensus       302 ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G-----------~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~  370 (966)
T KOG4626|consen  302 LDLAIDTYKRALELQPNFPDAYNNLANALKDKG-----------SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI  370 (966)
T ss_pred             HHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcc-----------chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence            688999999999999999999999999999754           88999999999999999985                


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHHhhhccC
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHKHGLGQQ   92 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~~~~~q~   92 (152)
                           +|+++|++++.-.+.|-+|..-.-.||
T Consensus       371 e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqg  402 (966)
T KOG4626|consen  371 EEATRLYLKALEVFPEFAAAHNNLASIYKQQG  402 (966)
T ss_pred             hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcc
Confidence                 588888887777777777765544343

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.79  E-value=2.8e-08  Score=89.93  Aligned_cols=80  Identities=18%  Similarity=0.209  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      +++|+..|+++|+++|++.++|+++|.+|...|           ++++|+.+|++|++++|+|.                
T Consensus       381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~  449 (615)
T TIGR00990       381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG-----------EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSI  449 (615)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCH
Confidence            678888999999999999999999999888654           99999999999999999984                


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHHhhhccC
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHKHGLGQQ   92 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~~~~~q~   92 (152)
                           .|+++++..+..++++..+..-+..+|
T Consensus       450 ~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g  481 (615)
T TIGR00990       450 ASSMATFRRCKKNFPEAPDVYNYYGELLLDQN  481 (615)
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence                 366677777778888877777665544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.76  E-value=1.4e-08  Score=59.07  Aligned_cols=34  Identities=29%  Similarity=0.535  Sum_probs=30.3

Q ss_pred             hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846           20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus        20 ~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +++|+++|.+|..++           ++++|++||++||+++|+|
T Consensus         1 a~~~~~~g~~~~~~~-----------~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLG-----------DYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhC-----------CchHHHHHHHHHHHHCcCC
Confidence            478999999999865           9999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.72  E-value=5.3e-08  Score=84.13  Aligned_cols=62  Identities=13%  Similarity=0.250  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   74 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~   74 (152)
                      +++|+..|++||+++|+++.+|++||++|..+|           +|++|+.+|++|++++|+|...+..+..+
T Consensus        52 ~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg-----------~~~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         52 FTEAVADANKAIELDPSLAKAYLRKGTACMKLE-----------EYQTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            789999999999999999999999999999764           99999999999999999998776666444

>PRK12370 invasion protein regulator; Provisional

Probab=98.71  E-value=7.2e-08  Score=87.04  Aligned_cols=53  Identities=13%  Similarity=0.169  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|++||++||++.++|++||.+|...|           ++++|+.+|++|++++|++.
T Consensus       354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G-----------~~~eAi~~~~~Al~l~P~~~  406 (553)
T PRK12370        354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAG-----------QLEEALQTINECLKLDPTRA  406 (553)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCCh
Confidence            567777777777777777777777777777654           78888888888888888764

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.70  E-value=8.9e-08  Score=59.75  Aligned_cols=54  Identities=22%  Similarity=0.336  Sum_probs=50.1

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++++++|++..+++.+|.+|...           +++++|+++|++++++.|.+.
T Consensus        15 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~   68 (100)
T cd00189          15 DYDEALEYYEKALELDPDNADAYYNLAAAYYKL-----------GKYEEALEDYEKALELDPDNA   68 (100)
T ss_pred             cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhCCCcch
Confidence            368999999999999999999999999999864           599999999999999999886

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.69  E-value=5.8e-08  Score=69.97  Aligned_cols=67  Identities=16%  Similarity=0.086  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCch
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPE   79 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kape   79 (152)
                      +++|+..|+++++++|++.+.++++|.+|...|           ++++|+.+|+++++++|++..+...++-+.+-+|
T Consensus        67 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  133 (135)
T TIGR02552        67 YEEAIDAYALAAALDPDDPRPYFHAAECLLALG-----------EPESALKALDLAIEICGENPEYSELKERAEAMLE  133 (135)
T ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence            567777788888888888888888888777643           7788888888888888877776665554444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.68  E-value=1.2e-07  Score=75.47  Aligned_cols=54  Identities=11%  Similarity=0.120  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|++.|+-...+||.+++-|++||.++..           +++|++|+++|.+|+.++|+|+
T Consensus        50 ~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-----------~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         50 EFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-----------QKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHhcCCCCc
Confidence            37899999999999999999999999999986           4599999999999999999996

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.67  E-value=5.8e-08  Score=88.03  Aligned_cols=55  Identities=22%  Similarity=0.302  Sum_probs=49.2

Q ss_pred             CHHHHHHHHHHHHhcCCCChHH---HHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDT---LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ   68 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA---~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yr   68 (152)
                      .|++|+..|++||++||++.++   |||||.+|..+|           ++++|++||++|+++.  |..|.
T Consensus        90 ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG-----------r~dEAla~LrrALels--n~~f~  147 (453)
T PLN03098         90 RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE-----------EGKKAADCLRTALRDY--NLKFS  147 (453)
T ss_pred             CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhc--chhHH
Confidence            4899999999999999999976   999999999865           9999999999999983  55554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.64  E-value=5.9e-08  Score=55.70  Aligned_cols=34  Identities=26%  Similarity=0.547  Sum_probs=30.4

Q ss_pred             hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846           20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus        20 ~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +++|++||.+|..+|           +|++|+++|++|++++|+|
T Consensus         1 a~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLG-----------NYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHCcCC
Confidence            478999999999865           9999999999999999987

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK12370 invasion protein regulator; Provisional

Probab=98.62  E-value=1.6e-07  Score=84.78  Aligned_cols=53  Identities=25%  Similarity=0.245  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..+++||++||++.++|..||.++...|           ++++|+.+|++|++++|+|.
T Consensus       320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~Al~l~P~~~  372 (553)
T PRK12370        320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHS-----------EYIVGSLLFKQANLLSPISA  372 (553)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCH
Confidence            579999999999999999999999999998754           99999999999999999986

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.60  E-value=1.3e-07  Score=79.05  Aligned_cols=54  Identities=13%  Similarity=0.104  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|++||+++|++..+++++|.+|...|           ++++|+++|+++++++|++.
T Consensus       113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g-----------~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGG-----------RYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCH
Confidence            4789999999999999999999999999998764           99999999999999999986

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.59  E-value=4e-08  Score=91.87  Aligned_cols=54  Identities=30%  Similarity=0.405  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+|.|..+|..||.+||.|-.|||-||.+|+++           |.+|.|.-+||||+++||.|.
T Consensus       470 e~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq-----------ek~e~Ae~~fqkA~~INP~ns  523 (638)
T KOG1126|consen  470 EFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ-----------EKLEFAEFHFQKAVEINPSNS  523 (638)
T ss_pred             HHHhHHHHHHhhhcCCchhhHHHHhhhhheecc-----------chhhHHHHHHHhhhcCCccch
Confidence            378999999999999999999999999999986           599999999999999999995

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.59  E-value=1.4e-07  Score=75.43  Aligned_cols=55  Identities=9%  Similarity=0.053  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHH-HhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAH-TSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy-~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|++|++++|++.+++.++|.++ ...|-         ..+++|.++|++|++++|+|.
T Consensus        89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~---------~~~~~A~~~l~~al~~dP~~~  144 (198)
T PRK10370         89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQ---------HMTPQTREMIDKALALDANEV  144 (198)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC---------CCcHHHHHHHHHHHHhCCCCh
Confidence            57778888888888888888888887765 33330         125777777777777777773

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.59  E-value=1.5e-07  Score=76.78  Aligned_cols=112  Identities=24%  Similarity=0.227  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      +|.|...++.+...||.+++++++=|.|+..+.-+. .-.+++..+++|+.=|++||.|||+.-                
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk-~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFK-QGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            688999999999999999999999999998876543 234677899999999999999999872                


Q ss_pred             ---------HHHHHHHHHhcCchh----------------hHHHHHhhhccCCCCCCCCCCCCCCCccccccccCC
Q 031846           66 ---------LYQKSLEVAAKAPEL----------------HMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSS  116 (152)
Q Consensus        66 ---------~YrkaLe~~~kapel----------------~~e~~~~~~~q~~~~~~~~~~~~~~~~~~~~~k~~s  116 (152)
                               .|.++.+.+.+|-++                -+|||..+..|+.+  ..+++..+|+....|..|..
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~~~~--~q~~~~~~~~~~~~~~~k~k  159 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQGLG--QQAMGGASSSSSSAKSSKKK  159 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHSSS-----------------------
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHHHhh--hhhccCCCCCCCCccccccc
Confidence                     467776666544433                25788888888863  33444554444433433443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.59  E-value=2.5e-07  Score=83.79  Aligned_cols=76  Identities=17%  Similarity=0.216  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      +++|+..|+++|+++|+..++|+++|.++..+|           ++++|+.+|++|++++|+|.                
T Consensus       347 ~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g-----------~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  415 (615)
T TIGR00990       347 HLEALADLSKSIELDPRVTQSYIKRASMNLELG-----------DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEF  415 (615)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            689999999999999999999999999998754           99999999999999999985                


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHHhh
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHKHG   88 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~~~   88 (152)
                           .|++++++.+...+.|..+....
T Consensus       416 ~~A~~~~~kal~l~P~~~~~~~~la~~~  443 (615)
T TIGR00990       416 AQAGKDYQKSIDLDPDFIFSHIQLGVTQ  443 (615)
T ss_pred             HHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence                 35555666555555555554433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.54  E-value=1.3e-07  Score=82.04  Aligned_cols=82  Identities=18%  Similarity=0.265  Sum_probs=65.7

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------   65 (152)
                      .|++||.+|.+||+++|+++--|.|..-||.++|           +|+.|++-.+.||.+||...               
T Consensus        96 ~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg-----------~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk  164 (304)
T KOG0553|consen   96 DYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG-----------EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK  164 (304)
T ss_pred             hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc-----------chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence            3899999999999999999999999999999975           99999999999999999885               


Q ss_pred             ------HHHHHHHHHhcCchh--hHHHHHhhhccCC
Q 031846           66 ------LYQKSLEVAAKAPEL--HMEIHKHGLGQQT   93 (152)
Q Consensus        66 ------~YrkaLe~~~kapel--~~e~~~~~~~q~~   93 (152)
                            .|+|+|++.+--...  |+++.++-+.|+.
T Consensus       165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence                  366666665544432  4455556565553

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.54  E-value=7.1e-08  Score=57.92  Aligned_cols=33  Identities=18%  Similarity=0.271  Sum_probs=29.6

Q ss_pred             HHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHH
Q 031846            8 KLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKAT   51 (152)
Q Consensus         8 ~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~   51 (152)
                      .|++||++||+++++|++||++|...|           ++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g-----------~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQG-----------DYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCc-----------CHHhhc
Confidence            489999999999999999999999865           888775

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.49  E-value=8.2e-07  Score=68.18  Aligned_cols=74  Identities=26%  Similarity=0.333  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccC---CCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcC
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFL---TPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA   77 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l---~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~ka   77 (152)
                      +++|+..|+++++++|++..+++++|.+|..+|..   ..+.++|...+++|+++|++++.++|+|  |..++.....+
T Consensus        88 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~--~~~~~~~~~~~  164 (172)
T PRK02603         88 HDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN--YIEAQNWLKTT  164 (172)
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh--HHHHHHHHHhc
Confidence            68999999999999999999999999999876532   3456677888999999999999999998  66666554433

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.48  E-value=5.1e-07  Score=87.89  Aligned_cols=81  Identities=21%  Similarity=0.318  Sum_probs=64.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------   65 (152)
                      .+++|+..|+++|+++|++.+++++||.+|..+|           ++++|+.+|++|++++|++.               
T Consensus       284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g-----------~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~  352 (1157)
T PRK11447        284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQG-----------DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW  352 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence            3789999999999999999999999999999765           89999999999999999763               


Q ss_pred             --------------------HHHHHHHHHhcCchhhHHHHHhhhccC
Q 031846           66 --------------------LYQKSLEVAAKAPELHMEIHKHGLGQQ   92 (152)
Q Consensus        66 --------------------~YrkaLe~~~kapel~~e~~~~~~~q~   92 (152)
                                          .|++++++.+..++.+..+......+|
T Consensus       353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g  399 (1157)
T PRK11447        353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK  399 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence                                245556666666666766666554444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.42  E-value=8.7e-07  Score=70.54  Aligned_cols=61  Identities=11%  Similarity=-0.033  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   72 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe   72 (152)
                      .+++||..|.+|+.++|+++.+++|+|.+|...|           +.++|.++|+.|+..-=+++.|....+
T Consensus        84 ~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG-----------~~~~A~~aF~~Ai~~~~~~~~~~~l~~  144 (157)
T PRK15363         84 HWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD-----------NVCYAIKALKAVVRICGEVSEHQILRQ  144 (157)
T ss_pred             hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHhccChhHHHHHH
Confidence            3789999999999999999999999999999865           999999999999999855555444433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.42  E-value=1.5e-06  Score=60.15  Aligned_cols=52  Identities=23%  Similarity=0.322  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +++|++.|+++++.+|++   .++++.+|.++...           +++++|+.+|++++..+|++
T Consensus        18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~   72 (119)
T TIGR02795        18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ-----------GKYADAAKAFLAVVKKYPKS   72 (119)
T ss_pred             HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh-----------ccHHHHHHHHHHHHHHCCCC
Confidence            688999999999999887   68999999999975           49999999999999999986

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.42  E-value=1.3e-06  Score=66.46  Aligned_cols=64  Identities=22%  Similarity=0.225  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhccc---CCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAF---LTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~---l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|++|++++|.+.+++.+||.+|..+|.   ..-|..+|..++++|+.+|++++..+|++.
T Consensus        88 ~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         88 HTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            6899999999999999999999999999983331   122567788889999999999999999775

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.42  E-value=1.1e-06  Score=85.74  Aligned_cols=53  Identities=23%  Similarity=0.273  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|+++++++|++.+++++||+++...|           ++++|+++|++|++++|+|.
T Consensus       625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G-----------~~eeAi~~l~~AL~l~P~~~  677 (987)
T PRK09782        625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSG-----------DIAQSREMLERAHKGLPDDP  677 (987)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCH
Confidence            445555555555555555555555555555433           55666666666666666554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.40  E-value=6.1e-07  Score=58.54  Aligned_cols=37  Identities=22%  Similarity=0.486  Sum_probs=33.7

Q ss_pred             CChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846           18 NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus        18 ~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++++|+++|+.+...           ++|++|+.+|++|+++||+|.
T Consensus         1 e~a~~~~~~g~~~~~~-----------~~~~~A~~~~~~ai~~~p~~~   37 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQ-----------GDYEEAIEYFEKAIELDPNNA   37 (69)
T ss_dssp             TSHHHHHHHHHHHHHT-----------THHHHHHHHHHHHHHHSTTHH
T ss_pred             CHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCH
Confidence            4678999999999975           499999999999999999996

...

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.38  E-value=2e-06  Score=63.70  Aligned_cols=54  Identities=22%  Similarity=0.183  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++++++|++..+++.+|.+|...|           ++++|+++|+++++++|++.
T Consensus        46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~~~~~   99 (234)
T TIGR02521        46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQLG-----------ELEKAEDSFRRALTLNPNNG   99 (234)
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCH
Confidence            3689999999999999999999999999998754           99999999999999999885

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.38  E-value=1.1e-06  Score=85.74  Aligned_cols=53  Identities=15%  Similarity=0.137  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|++||+++|++++++++||.+|..+|           ++++|+.+|++|++++|++.
T Consensus       659 ~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG-----------d~~eA~~~l~~Al~l~P~~a  711 (987)
T PRK09782        659 IAQSREMLERAHKGLPDDPALIRQLAYVNQRLD-----------DMAATQHYARLVIDDIDNQA  711 (987)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCCc
Confidence            689999999999999999999999999999865           99999999999999999984

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.35  E-value=2.1e-06  Score=65.34  Aligned_cols=55  Identities=25%  Similarity=0.298  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHhcCCCCh---HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            1 MILDAISKLEEALMVSPNRH---DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~---dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      .+++|+..|++||.+.|+..   .+|++||.+|...|           ++++|+.+|++|+.++|++..
T Consensus        50 ~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g-----------~~~eA~~~~~~Al~~~~~~~~  107 (168)
T CHL00033         50 EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG-----------EHTKALEYYFQALERNPFLPQ  107 (168)
T ss_pred             CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCcCcHH
Confidence            37899999999999988743   58999999999865           999999999999999998853

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.32  E-value=2.1e-06  Score=59.37  Aligned_cols=61  Identities=20%  Similarity=0.159  Sum_probs=53.1

Q ss_pred             CHHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   72 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe   72 (152)
                      .+++|+..|++++..+|++   +++++++|.++..+           +++++|+.+|+++++..|++...+.+++
T Consensus        54 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~~~~~~~~  117 (119)
T TIGR02795        54 KYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL-----------GDKEKAKATLQQVIKRYPGSSAAKLAQK  117 (119)
T ss_pred             cHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh-----------CChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            0478999999999999986   78999999999875           4999999999999999999988777653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.32  E-value=5.7e-07  Score=61.53  Aligned_cols=53  Identities=23%  Similarity=0.315  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHHHHhcCCC--ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPN--RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~--~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++++.+|.  +...+++||.+|...|           +|++|++++++ ++.+|.|.
T Consensus         4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~-----------~y~~A~~~~~~-~~~~~~~~   58 (84)
T PF12895_consen    4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG-----------KYEEAIELLQK-LKLDPSNP   58 (84)
T ss_dssp             -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHC-HTHHHCHH
T ss_pred             cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC-----------CHHHHHHHHHH-hCCCCCCH
Confidence            478999999999999995  4667888999999865           99999999999 99999884

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=1.7e-06  Score=80.49  Aligned_cols=65  Identities=25%  Similarity=0.299  Sum_probs=57.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhc
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAK   76 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~k   76 (152)
                      ++++||..|++||.+.|++.++|--+|.+|.-+|           ++++|+++|.|||.++|+|......|.++-.
T Consensus       470 ~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llg-----------nld~Aid~fhKaL~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  470 KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLG-----------NLDKAIDHFHKALALKPDNIFISELLKLAIE  534 (611)
T ss_pred             hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc-----------ChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            5799999999999999999999999999998754           9999999999999999999877766654433

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.30  E-value=3e-06  Score=82.65  Aligned_cols=53  Identities=23%  Similarity=0.325  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|+++++++|++..++++||.+|..+|           ++++|+++|++|++++|+|.
T Consensus       367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g-----------~~~eA~~~y~~aL~~~p~~~  419 (1157)
T PRK11447        367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARK-----------DYAAAERYYQQALRMDPGNT  419 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCH
Confidence            567777777777777777777777777777644           77777777777777777764

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.30  E-value=9.1e-07  Score=51.01  Aligned_cols=34  Identities=24%  Similarity=0.486  Sum_probs=29.8

Q ss_pred             hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846           20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus        20 ~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +++|++||.+|..+|           ++++|+++|++|++++|+|
T Consensus         1 a~~~~~lg~~y~~~~-----------~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLG-----------DYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTT-----------SHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCC
Confidence            368999999999865           9999999999999999976

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.28  E-value=3.4e-06  Score=52.46  Aligned_cols=51  Identities=22%  Similarity=0.376  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS   63 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~   63 (152)
                      +++|+..|++++.++|.+.++++++|.++...           +++++|..+|+++++++|+
T Consensus        50 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          50 YEEALEDYEKALELDPDNAKAYYNLGLAYYKL-----------GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH-----------HhHHHHHHHHHHHHccCCC
Confidence            68999999999999999999999999999864           5899999999999999984

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.27  E-value=3.9e-06  Score=77.78  Aligned_cols=52  Identities=21%  Similarity=0.118  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHH----HHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFN----KATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~e----kA~~~FqkAleldP~N   64 (152)
                      +++|+..|+++++++|++..++++||.+|..+|           +++    +|+.+|++|++++|++
T Consensus       228 ~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G-----------~~~eA~~~A~~~~~~Al~l~P~~  283 (656)
T PRK15174        228 YQEAIQTGESALARGLDGAALRRSLGLAYYQSG-----------RSREAKLQAAEHWRHALQFNSDN  283 (656)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----------CchhhHHHHHHHHHHHHhhCCCC
Confidence            466777777777777777777777777776655           333    3566666666666665

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.25  E-value=1.1e-06  Score=58.75  Aligned_cols=49  Identities=27%  Similarity=0.326  Sum_probs=40.2

Q ss_pred             CHHHHHHHHHHHHhc----CCC---ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846            1 MILDAISKLEEALMV----SPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE   60 (152)
Q Consensus         1 mieeAIs~leeAL~i----dP~---~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel   60 (152)
                      .+++|++.|++||++    .++   -..+++|||.+|..+|           ++++|+++|++|+++
T Consensus        20 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   20 RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG-----------DYEEALEYYQKALDI   75 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhh
Confidence            478999999999965    222   3567999999999865           999999999999986

...

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.24  E-value=4.7e-06  Score=65.59  Aligned_cols=55  Identities=15%  Similarity=0.029  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHhcCCCCh---HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            1 MILDAISKLEEALMVSPNRH---DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~---dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      .+++|+..|+++++++|++.   ++++++|.+|...+           ++++|+..|+++++++|++..
T Consensus        48 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~~  105 (235)
T TIGR03302        48 DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG-----------DYAEAIAAADRFIRLHPNHPD  105 (235)
T ss_pred             CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHCcCCCc
Confidence            47899999999999999876   68999999999754           999999999999999998763

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.24  E-value=4.5e-06  Score=64.05  Aligned_cols=56  Identities=25%  Similarity=0.350  Sum_probs=49.1

Q ss_pred             CHHHHHHHHHHHHhcCCCCh---HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHH
Q 031846            1 MILDAISKLEEALMVSPNRH---DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELY   67 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~---dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Y   67 (152)
                      .+++|+..|+++++++|+..   .++++||.+|...|           ++++|+.+|++|++++|++...
T Consensus        50 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~  108 (172)
T PRK02603         50 EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG-----------EHDKALEYYHQALELNPKQPSA  108 (172)
T ss_pred             CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCcccHHH
Confidence            37899999999999988754   68999999999865           9999999999999999998643

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.22  E-value=1.1e-05  Score=59.65  Aligned_cols=49  Identities=24%  Similarity=0.380  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE   61 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld   61 (152)
                      +++|+..|+++++++|++..+++++|.+|...|           ++++|+.+|+++++..
T Consensus        81 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g-----------~~~~A~~~~~~~~~~~  129 (234)
T TIGR02521        81 LEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG-----------KYEQAMQQFEQAIEDP  129 (234)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHhcc
Confidence            678999999999999999999999999998754           7788888888887754

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.21  E-value=3.8e-06  Score=52.00  Aligned_cols=41  Identities=15%  Similarity=0.150  Sum_probs=36.6

Q ss_pred             hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031846           20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL   71 (152)
Q Consensus        20 ~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaL   71 (152)
                      +++++.||.+|..+|           ++++|+++|+++|+.+|+|...+..|
T Consensus         1 p~~~~~la~~~~~~G-----------~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    1 PAAWLALARAYRRLG-----------QPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             CHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            468999999999875           99999999999999999998777665

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=7.6e-06  Score=73.36  Aligned_cols=56  Identities=29%  Similarity=0.350  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ   68 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yr   68 (152)
                      +.+||..++++|+++|+|..|+|.-|.||..+           ++|+.|...|+||++++|+|-..+
T Consensus       273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~-----------~e~~~A~~df~ka~k~~P~Nka~~  328 (397)
T KOG0543|consen  273 YKEAIESCNKVLELDPNNVKALYRRGQALLAL-----------GEYDLARDDFQKALKLEPSNKAAR  328 (397)
T ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh-----------ccHHHHHHHHHHHHHhCCCcHHHH
Confidence            67899999999999999999999999999864           599999999999999999996433

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.20  E-value=3.5e-06  Score=77.02  Aligned_cols=55  Identities=13%  Similarity=0.061  Sum_probs=50.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELY   67 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Y   67 (152)
                      .+++|+..|++||++|| +..+|..||.++...|           ++++|+++|++|+.++|.++.|
T Consensus       435 ~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G-----------~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        435 KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKG-----------DNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCchH
Confidence            37899999999999999 5899999999999765           9999999999999999998754

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.18  E-value=3.2e-06  Score=76.88  Aligned_cols=41  Identities=17%  Similarity=0.192  Sum_probs=38.0

Q ss_pred             hcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846           14 MVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus        14 ~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +-+|++.++|+|||++|..+|           +|++|+.+|++||+++|++.
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lG-----------ryeEAIa~f~rALeL~Pd~a  109 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKG-----------RVKDALAQFETALELNPNPD  109 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCch
Confidence            368999999999999999865           99999999999999999986

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.17  E-value=9.4e-06  Score=75.26  Aligned_cols=54  Identities=9%  Similarity=0.010  Sum_probs=49.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++++++|++.+++..||+++...|           ++++|+++|++|++++|++.
T Consensus        91 ~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g-----------~~~~Ai~~l~~Al~l~P~~~  144 (656)
T PRK15174         91 QPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK-----------QYATVADLAEQAWLAFSGNS  144 (656)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCcH
Confidence            3689999999999999999999999999998765           99999999999999999985

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.12  E-value=1.6e-05  Score=74.61  Aligned_cols=54  Identities=15%  Similarity=0.065  Sum_probs=49.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      ++++|+..|++++.++|++.+++++||.++..+|           ++++|+++|++|++++|+|.
T Consensus       374 ~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g-----------~~~~A~~~l~~al~l~Pd~~  427 (765)
T PRK10049        374 DLPQAEMRARELAYNAPGNQGLRIDYASVLQARG-----------WPRAAENELKKAEVLEPRNI  427 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCh
Confidence            4689999999999999999999999999998765           89999999999999999994

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.10  E-value=1.2e-05  Score=76.10  Aligned_cols=78  Identities=3%  Similarity=-0.064  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      ++||...|+.+++++|++..|+.+++.++.++           +++|+|+.+++++|+.+|+|.                
T Consensus       102 ~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~-----------~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~  170 (694)
T PRK15179        102 SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ-----------QGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQS  170 (694)
T ss_pred             cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcch
Confidence            68999999999999999999999999999875           499999999999999999985                


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHHhhhc
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHKHGLG   90 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~~~~~   90 (152)
                           .|+++++..+..++....+...+..
T Consensus       171 ~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~  200 (694)
T PRK15179        171 EQADACFERLSRQHPEFENGYVGWAQSLTR  200 (694)
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                 3555555445555555666655543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.08  E-value=1.3e-05  Score=63.00  Aligned_cols=69  Identities=17%  Similarity=0.229  Sum_probs=55.4

Q ss_pred             CHHHHHHHHHHHHhcCCCChH---HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHD---TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   72 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~d---A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe   72 (152)
                      .+++|+..|+++++++|++..   ++|.+|.++....   .+.....+++++|++.|+++++.+|++..+.+++.
T Consensus        85 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~  156 (235)
T TIGR03302        85 DYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQI---DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK  156 (235)
T ss_pred             CHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhc---ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence            368999999999999998887   7999999998631   11122246899999999999999999987665553

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.06  E-value=8.4e-06  Score=76.60  Aligned_cols=54  Identities=20%  Similarity=0.305  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      +|.|.-.|++|++|||.+.....|+|..|..+           ++.|+|+..|++|+.+||.|.+
T Consensus       505 ~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~-----------k~~d~AL~~~~~A~~ld~kn~l  558 (638)
T KOG1126|consen  505 LEFAEFHFQKAVEINPSNSVILCHIGRIQHQL-----------KRKDKALQLYEKAIHLDPKNPL  558 (638)
T ss_pred             hhHHHHHHHhhhcCCccchhHHhhhhHHHHHh-----------hhhhHHHHHHHHHHhcCCCCch
Confidence            68999999999999999999999999999975           4999999999999999999974

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.06  E-value=1.1e-05  Score=74.71  Aligned_cols=79  Identities=20%  Similarity=0.269  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------HHH-----
Q 031846            3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------LYQ-----   68 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------~Yr-----   68 (152)
                      ++-...|.+|..+||++++.||+.|..+.-           .++|++|+.-||||+.|+|+|-         +||     
T Consensus       377 ~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl-----------L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~  445 (606)
T KOG0547|consen  377 EKMWKDFNKAEDLDPENPDVYYHRGQMRFL-----------LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIA  445 (606)
T ss_pred             HHHHHHHHHHHhcCCCCCchhHhHHHHHHH-----------HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999875           4699999999999999999994         233     


Q ss_pred             -------HHHHHHhcCchhhHHHHHhhhccC
Q 031846           69 -------KSLEVAAKAPELHMEIHKHGLGQQ   92 (152)
Q Consensus        69 -------kaLe~~~kapel~~e~~~~~~~q~   92 (152)
                             .+.+-++..||.+.-+..-+..||
T Consensus       446 ~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqq  476 (606)
T KOG0547|consen  446 ESMKTFEEAKKKFPNCPEVYNLFAEILTDQQ  476 (606)
T ss_pred             HHHHHHHHHHHhCCCCchHHHHHHHHHhhHH
Confidence                   334455666666666666665555

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.05  E-value=2.9e-05  Score=68.42  Aligned_cols=53  Identities=23%  Similarity=0.287  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|+++++.+|++..+++++|.+|...|           ++++|+.+|+++++.+|++.
T Consensus       752 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~  804 (899)
T TIGR02917       752 TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQK-----------DYDKAIKHYRTVVKKAPDNA  804 (899)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc-----------CHHHHHHHHHHHHHhCCCCH
Confidence            567888888888888888888888888887654           88889999999999988875

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.04  E-value=1.6e-05  Score=75.16  Aligned_cols=54  Identities=11%  Similarity=0.073  Sum_probs=50.8

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+|||...++++|..+|++.++++.+|.++..+|           ++++|+++|++++..+|+++
T Consensus       135 ~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g-----------~~~~A~~~y~~~~~~~p~~~  188 (694)
T PRK15179        135 GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG-----------QSEQADACFERLSRQHPEFE  188 (694)
T ss_pred             cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc-----------chHHHHHHHHHHHhcCCCcH
Confidence            3799999999999999999999999999999765           99999999999999999976

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.03  E-value=2.6e-05  Score=68.67  Aligned_cols=52  Identities=17%  Similarity=0.100  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|+++++++|++..++.+||.++...|           + ++|+++|++++++.|+|+
T Consensus       786 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-----------~-~~A~~~~~~~~~~~~~~~  837 (899)
T TIGR02917       786 YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK-----------D-PRALEYAEKALKLAPNIP  837 (899)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-----------c-HHHHHHHHHHHhhCCCCc
Confidence            678999999999999999999999999888754           5 668888888888888875

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=1.5e-05  Score=73.64  Aligned_cols=53  Identities=11%  Similarity=0.094  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      |.+||..|.+||+.||+++.+|.|.+.+|++++           +|..|+.+-++++++||++.
T Consensus       374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~-----------~~~~aL~Da~~~ieL~p~~~  426 (539)
T KOG0548|consen  374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLG-----------EYPEALKDAKKCIELDPNFI  426 (539)
T ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHhcCchHH
Confidence            678999999999999999999999999999875           67777777777777777664

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.03  E-value=1.6e-05  Score=66.91  Aligned_cols=54  Identities=20%  Similarity=0.304  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            2 ILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      +++|+..|++.|+..|+.   ++|+|-||.+|...|           ++++|+.+|+++++..|+++.
T Consensus       159 y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g-----------~~~~A~~~f~~vv~~yP~s~~  215 (263)
T PRK10803        159 QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG-----------KKDDAAYYFASVVKNYPKSPK  215 (263)
T ss_pred             HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCCCCcc
Confidence            789999999999999998   589999999999754           999999999999999999863

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.98  E-value=3.8e-05  Score=72.17  Aligned_cols=52  Identities=17%  Similarity=0.221  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +++|+..|+++|+++|++.+++..|+.++...|           ++++|+.+++++++.+|+|
T Consensus        65 ~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g-----------~~~eA~~~l~~~l~~~P~~  116 (765)
T PRK10049         65 WQNSLTLWQKALSLEPQNDDYQRGLILTLADAG-----------QYDEALVKAKQLVSGAPDK  116 (765)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCC
Confidence            345555555555555555555555555554432           4444444444444444443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=2.4e-05  Score=72.11  Aligned_cols=52  Identities=25%  Similarity=0.362  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      ..||+.|.+|++|||.+..|||-||.+|..++           ...=|+-|||||+++-|++.
T Consensus       381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~-----------Mh~YaLyYfqkA~~~kPnDs  432 (559)
T KOG1155|consen  381 HAAIESYRRAVDINPRDYRAWYGLGQAYEIMK-----------MHFYALYYFQKALELKPNDS  432 (559)
T ss_pred             HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc-----------chHHHHHHHHHHHhcCCCch
Confidence            46888888888888888888888888887643           66778888888888888775

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.94  E-value=4.9e-05  Score=63.31  Aligned_cols=53  Identities=17%  Similarity=0.214  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|+..|+++++++|+..++++.||.+|...|           ++++|+++|+++++++|++
T Consensus       195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        195 DLDAARALLKKALAADPQCVRASILLGDLALAQG-----------DYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHChhh
Confidence            3688999999999999999999999999998764           8999999999999998876

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.91  E-value=1.9e-05  Score=73.57  Aligned_cols=54  Identities=22%  Similarity=0.189  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      |+.||.+|+.||..+|++...|..||-+++.-           .+.++|+..|+|||+|.|..-.
T Consensus       446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~-----------~~s~EAIsAY~rALqLqP~yVR  499 (579)
T KOG1125|consen  446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANG-----------NRSEEAISAYNRALQLQPGYVR  499 (579)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCC-----------cccHHHHHHHHHHHhcCCCeee
Confidence            67888888888888888888888888888742           4888888888888888888753

>PLN02789 farnesyltranstransferase

Probab=97.89  E-value=3.5e-05  Score=66.46  Aligned_cols=53  Identities=9%  Similarity=0.018  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      ++|+..++++|+.||++..+|++.|.++..++.         ..++++++++++||++||+|
T Consensus        89 ~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~---------~~~~~el~~~~kal~~dpkN  141 (320)
T PLN02789         89 EEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP---------DAANKELEFTRKILSLDAKN  141 (320)
T ss_pred             HHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc---------hhhHHHHHHHHHHHHhCccc
Confidence            455555555555555555555555555544330         11244555555555555555

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.89  E-value=2e-05  Score=75.37  Aligned_cols=52  Identities=29%  Similarity=0.385  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      ++.+.+..||++||.+|+|||+||.++.++|           ++++|.+||+-|+++++.++.
T Consensus       738 ~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G-----------d~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  738 EKRSLLSDALRLDPLNHEAWYYLGEVFKKLG-----------DSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-----------chHHHHHHHHHHHhhccCCCc
Confidence            4456899999999999999999999999876           999999999999999999874

>PLN02789 farnesyltranstransferase

Probab=97.89  E-value=3.1e-05  Score=66.83  Aligned_cols=53  Identities=9%  Similarity=0.047  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      ++++++.++++|++||++..||++.|.++..++           ++++|+++|+++|++||.|.
T Consensus       124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~-----------~~~eeL~~~~~~I~~d~~N~  176 (320)
T PLN02789        124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG-----------GWEDELEYCHQLLEEDVRNN  176 (320)
T ss_pred             hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHCCCch
Confidence            367899999999999999999999999998754           89999999999999999885

>smart00028 TPR Tetratricopeptide repeats

Probab=97.88  E-value=2.6e-05  Score=40.75  Aligned_cols=33  Identities=30%  Similarity=0.602  Sum_probs=29.6

Q ss_pred             HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846           21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus        21 dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      ++++++|.+|...           +++++|..+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~-----------~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKL-----------GDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHH-----------hhHHHHHHHHHHHHccCCCC
Confidence            6799999999864           59999999999999999974

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.88  E-value=5e-05  Score=62.82  Aligned_cols=60  Identities=22%  Similarity=0.119  Sum_probs=52.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHH---HHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-----HHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTL---WCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSL   71 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~---~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne-----~YrkaL   71 (152)
                      .+++|+..|++++...|....+.   +.||.+|...+           +|++|+.+|++.+++.|+|+     .|+.++
T Consensus        47 ~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~-----------~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~  114 (243)
T PRK10866         47 NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA-----------DLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL  114 (243)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence            37899999999999999987775   99999999864           99999999999999999996     466664

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.88  E-value=1.7e-05  Score=47.43  Aligned_cols=29  Identities=28%  Similarity=0.376  Sum_probs=23.9

Q ss_pred             HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846           22 TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE   61 (152)
Q Consensus        22 A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld   61 (152)
                      ||.+||++|..+|           +|++|++||++||.+.
T Consensus         1 al~~Lg~~~~~~g-----------~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQG-----------DYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT------------HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhc
Confidence            6899999999875           9999999999965443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.87  E-value=5e-05  Score=68.51  Aligned_cols=62  Identities=24%  Similarity=0.304  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   74 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~   74 (152)
                      +-|||..+.++|.++|++.++|.....||.-           .++||.|+.-|++|+++||+|...|..++-+
T Consensus       323 ~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~-----------dE~YD~AI~dye~A~e~n~sn~~~reGle~A  384 (504)
T KOG0624|consen  323 FGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG-----------DEMYDDAIHDYEKALELNESNTRAREGLERA  384 (504)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            5699999999999999999999999999983           6899999999999999999997655555433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.85  E-value=5.1e-05  Score=64.78  Aligned_cols=62  Identities=23%  Similarity=0.310  Sum_probs=55.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV   73 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~   73 (152)
                      .+.+|++.|.+|.+++|++.++|.-||.+|...|           ++++|-..|.||+++.|+++.+..+|-|
T Consensus       115 ~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G-----------r~~~Ar~ay~qAl~L~~~~p~~~nNlgm  176 (257)
T COG5010         115 NFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG-----------RFDEARRAYRQALELAPNEPSIANNLGM  176 (257)
T ss_pred             chHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc-----------ChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence            3689999999999999999999999999999865           9999999999999999999876666543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=4.8e-05  Score=70.10  Aligned_cols=74  Identities=20%  Similarity=0.289  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      .|.||..|++||++||+...||--+|--|..+.           +-..|+++|.+||++||.+-                
T Consensus       346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK-----------Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh  414 (559)
T KOG1155|consen  346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK-----------NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH  414 (559)
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc-----------ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch
Confidence            488999999999999999999999999998753           89999999999999999873                


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHH
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHK   86 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~   86 (152)
                           -|||++++-+-.+-+-.-+++
T Consensus       415 ~YaLyYfqkA~~~kPnDsRlw~aLG~  440 (559)
T KOG1155|consen  415 FYALYYFQKALELKPNDSRLWVALGE  440 (559)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHH
Confidence                 278888888888876666555

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.84  E-value=0.00019  Score=58.47  Aligned_cols=62  Identities=16%  Similarity=0.133  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHhcC--CCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846            2 ILDAISKLEEALMVS--PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   74 (152)
Q Consensus         2 ieeAIs~leeAL~id--P~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~   74 (152)
                      +++++..++++....  |.+...|+.+|.++...|           ++++|+.+|++||+++|+|+..+..+-..
T Consensus       126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G-----------~~~~A~~~~~~al~~~P~~~~~~~~l~~~  189 (280)
T PF13429_consen  126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG-----------DPDKALRDYRKALELDPDDPDARNALAWL  189 (280)
T ss_dssp             HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC-----------HHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            567788888877655  677788888999999865           99999999999999999999877766433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.80  E-value=7.7e-05  Score=49.46  Aligned_cols=45  Identities=27%  Similarity=0.352  Sum_probs=38.2

Q ss_pred             HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhc
Q 031846           21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAK   76 (152)
Q Consensus        21 dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~k   76 (152)
                      |.+|.|+.+++++|           +|++|..|.+++|+++|+|..++...++.++
T Consensus         2 d~lY~lAig~ykl~-----------~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~   46 (53)
T PF14853_consen    2 DCLYYLAIGHYKLG-----------EYEKARRYCDALLEIEPDNRQAQSLKELIED   46 (53)
T ss_dssp             HHHHHHHHHHHHTT------------HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhh-----------hHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence            57899999999875           9999999999999999999998888777654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.80  E-value=6.6e-05  Score=63.83  Aligned_cols=53  Identities=19%  Similarity=0.113  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +..|..-||+||++||++.++|--+..+|.++|           +.+.|-+.|++|+.++|+|-
T Consensus        51 ~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~G-----------e~~~A~e~YrkAlsl~p~~G  103 (250)
T COG3063          51 YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG-----------ENDLADESYRKALSLAPNNG  103 (250)
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-----------ChhhHHHHHHHHHhcCCCcc
Confidence            456888899999999999999999999988765           88999999999999999885

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.80  E-value=0.00011  Score=67.30  Aligned_cols=64  Identities=22%  Similarity=0.074  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHH---------------------------------HHHhHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDE---------------------------------AKEYFN   48 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~e---------------------------------A~~~~e   48 (152)
                      ++.|++.|++|+++||+++.||--|+.+|.....+.|+...                                 ..++++
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~  437 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD  437 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence            46899999999999999999999998888554334442111                                 013899


Q ss_pred             HHHHHHHHHHHcCCCcH
Q 031846           49 KATLYFQQAVDEEPSNE   65 (152)
Q Consensus        49 kA~~~FqkAleldP~Ne   65 (152)
                      +|..+|+||++++|+..
T Consensus       438 ~A~~~l~rAl~L~ps~~  454 (517)
T PRK10153        438 EAYQAINKAIDLEMSWL  454 (517)
T ss_pred             HHHHHHHHHHHcCCCHH
Confidence            99999999999999654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.78  E-value=7.7e-05  Score=60.74  Aligned_cols=33  Identities=18%  Similarity=0.134  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHA   34 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g   34 (152)
                      .++|+..|++||+++|++.+++..|+.++...|
T Consensus       162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~  194 (280)
T PF13429_consen  162 PDKALRDYRKALELDPDDPDARNALAWLLIDMG  194 (280)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence            579999999999999999999999999988654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.75  E-value=0.00013  Score=61.44  Aligned_cols=63  Identities=16%  Similarity=0.165  Sum_probs=55.5

Q ss_pred             CHHHHHHHHHHHHhcCCC---ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   74 (152)
Q Consensus         1 mieeAIs~leeAL~idP~---~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~   74 (152)
                      .+++|+..|+++++..|+   .++|++.||++|..+|           ++++|+..|++.++..|+++..+++.+..
T Consensus       195 ~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g-----------~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        195 KKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG-----------DTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             CHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            478999999999977666   6999999999998754           99999999999999999999888886543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.73  E-value=0.00015  Score=62.97  Aligned_cols=65  Identities=15%  Similarity=0.137  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcC
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA   77 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~ka   77 (152)
                      .++|+..+++.++.+|++++.+.++|.++...           ++|++|.++|+++++++|+++.|...-.+.++.
T Consensus       310 ~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~-----------~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~  374 (398)
T PRK10747        310 PEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH-----------GEWQEASLAFRAALKQRPDAYDYAWLADALDRL  374 (398)
T ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999975           499999999999999999998766554444443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.73  E-value=7e-05  Score=42.24  Aligned_cols=33  Identities=24%  Similarity=0.444  Sum_probs=30.2

Q ss_pred             HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846           21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus        21 dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +|+|++|.+|...|           ++++|++.|++.++..|++
T Consensus         1 ~a~~~~a~~~~~~g-----------~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLG-----------DYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHC-----------HHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHCcCC
Confidence            68999999999754           9999999999999999975

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.69  E-value=0.00019  Score=61.05  Aligned_cols=33  Identities=24%  Similarity=0.160  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHA   34 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g   34 (152)
                      .+-|-+.|++||.++|++.+.+.|-|--++++|
T Consensus        85 ~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg  117 (250)
T COG3063          85 NDLADESYRKALSLAPNNGDVLNNYGAFLCAQG  117 (250)
T ss_pred             hhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence            567889999999999999999999999999887

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.68  E-value=9.1e-05  Score=73.04  Aligned_cols=55  Identities=22%  Similarity=0.212  Sum_probs=50.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .||+||+..+++|+.||++-.|+.-||.|+.+++          .+.|+|.++|..|.+++|+|-
T Consensus        17 ~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~----------q~le~A~ehYv~AaKldpdnl   71 (1238)
T KOG1127|consen   17 EYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLG----------QDLEKAAEHYVLAAKLDPDNL   71 (1238)
T ss_pred             cHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcc----------CCHHHHHHHHHHHHhcChhhh
Confidence            4899999999999999999999999999999876          459999999999999999995

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=0.0002  Score=62.04  Aligned_cols=58  Identities=21%  Similarity=0.169  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKS   70 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yrka   70 (152)
                      .++-|..++.-|..||++.+-|+-||-+|..+           ++++.|...|.+|+++.|+|..+.-+
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~-----------~~~~~A~~AY~~A~rL~g~n~~~~~g  195 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMAL-----------GRASDALLAYRNALRLAGDNPEILLG  195 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-----------cchhHHHHHHHHHHHhCCCCHHHHHH
Confidence            46789999999999999999999999999975           49999999999999999999854433

>TIGR00540 hemY_coli hemY protein

Probab=97.63  E-value=0.00022  Score=61.97  Aligned_cols=63  Identities=14%  Similarity=0.045  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHhcCCCCh--HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHH--HHHHcCCCcHHHHHHHHHHh
Q 031846            2 ILDAISKLEEALMVSPNRH--DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQ--QAVDEEPSNELYQKSLEVAA   75 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~--dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~Fq--kAleldP~Ne~YrkaLe~~~   75 (152)
                      .+.++..++++++.+|+++  ..+.+||.++...           ++|++|.++|+  ++++++|+++.|...-++..
T Consensus       315 ~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~-----------~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~  381 (409)
T TIGR00540       315 NEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH-----------GEFIEAADAFKNVAACKEQLDANDLAMAADAFD  381 (409)
T ss_pred             hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc-----------ccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence            3578899999999999999  8888999999875           49999999999  69999999998776655554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=0.00019  Score=65.92  Aligned_cols=35  Identities=23%  Similarity=0.370  Sum_probs=31.6

Q ss_pred             HHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcC
Q 031846           43 AKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA   77 (152)
Q Consensus        43 A~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~ka   77 (152)
                      |.+.+.+|+++|++||.+||+|+...+.|...+|.
T Consensus       483 A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~  517 (564)
T KOG1174|consen  483 AQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS  517 (564)
T ss_pred             HhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence            55799999999999999999999999999887765

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.61  E-value=0.00043  Score=57.70  Aligned_cols=26  Identities=15%  Similarity=0.193  Sum_probs=14.6

Q ss_pred             hHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031846           46 YFNKATLYFQQAVDEEPSNELYQKSL   71 (152)
Q Consensus        46 ~~ekA~~~FqkAleldP~Ne~YrkaL   71 (152)
                      ++++|+..|+++++.+|++..+...+
T Consensus       297 ~~~~A~~~l~~~l~~~P~~~~~~~l~  322 (389)
T PRK11788        297 GPEAAQALLREQLRRHPSLRGFHRLL  322 (389)
T ss_pred             CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            55566666666666666555544333

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.0002  Score=66.44  Aligned_cols=62  Identities=18%  Similarity=0.258  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   74 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~   74 (152)
                      |++|.+.-.+.++++|+-+++|..+|+|+.-+           ++|++|+..|.+.|+.||+|......|.-+
T Consensus        52 ~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l-----------g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a  113 (539)
T KOG0548|consen   52 YEKALKDATKTRRLNPDWAKGYSRKGAALFGL-----------GDYEEAILAYSEGLEKDPSNKQLKTGLAQA  113 (539)
T ss_pred             HHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc-----------ccHHHHHHHHHHHhhcCCchHHHHHhHHHh
Confidence            34444444444445555555555555554432           499999999999999999998766665443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.59  E-value=0.00018  Score=59.38  Aligned_cols=52  Identities=12%  Similarity=0.119  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +++|+..|+++++++|++..++..||.+|...|           ++++|+.+|+++++..|.+
T Consensus       130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g-----------~~~eA~~~l~~~l~~~~~~  181 (355)
T cd05804         130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQG-----------RFKEGIAFMESWRDTWDCS  181 (355)
T ss_pred             HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC-----------CHHHHHHHHHhhhhccCCC
Confidence            689999999999999999999999999999765           9999999999999998854

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.59  E-value=0.00015  Score=67.75  Aligned_cols=61  Identities=20%  Similarity=0.243  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV   73 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~   73 (152)
                      +-+|+-.||.|++.||+|.+||--||.+++.           +++=..|+..+++||++||+|-....+|.+
T Consensus       301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaE-----------NE~E~~ai~AL~rcl~LdP~NleaLmaLAV  361 (579)
T KOG1125|consen  301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAE-----------NENEQNAISALRRCLELDPTNLEALMALAV  361 (579)
T ss_pred             chHHHHHHHHHHhhChHHHHHHHHhhhHhhh-----------ccchHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            4589999999999999999999999999996           356678999999999999999755555433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.59  E-value=0.00014  Score=46.94  Aligned_cols=34  Identities=24%  Similarity=0.376  Sum_probs=29.3

Q ss_pred             HHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHH
Q 031846           24 WCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ   68 (152)
Q Consensus        24 ~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yr   68 (152)
                      |.+|.++...|           +|++|+.+|+++++.+|+|..+.
T Consensus         1 ~~~a~~~~~~g-----------~~~~A~~~~~~~l~~~P~~~~a~   34 (65)
T PF13432_consen    1 YALARALYQQG-----------DYDEAIAAFEQALKQDPDNPEAW   34 (65)
T ss_dssp             HHHHHHHHHCT-----------HHHHHHHHHHHHHCCSTTHHHHH
T ss_pred             ChHHHHHHHcC-----------CHHHHHHHHHHHHHHCCCCHHHH
Confidence            56889998765           99999999999999999997433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.57  E-value=0.00015  Score=67.33  Aligned_cols=76  Identities=20%  Similarity=0.199  Sum_probs=57.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH--------------H
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------------L   66 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne--------------~   66 (152)
                      .|++|+..|+++++|||++.-+|..|+.++++++           .++++...|+.|.+--|+-+              .
T Consensus       409 q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~-----------k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq  477 (606)
T KOG0547|consen  409 QYEEAIADFQKAISLDPENAYAYIQLCCALYRQH-----------KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ  477 (606)
T ss_pred             HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh
Confidence            3799999999999999999999999999999864           66777777777777777543              3


Q ss_pred             HHHHHHHHhcCchhhHHHHHh
Q 031846           67 YQKSLEVAAKAPELHMEIHKH   87 (152)
Q Consensus        67 YrkaLe~~~kapel~~e~~~~   87 (152)
                      +-+++++++++.+|-+..|.-
T Consensus       478 Fd~A~k~YD~ai~LE~~~~~~  498 (606)
T KOG0547|consen  478 FDKAVKQYDKAIELEPREHLI  498 (606)
T ss_pred             HHHHHHHHHHHHhhccccccc
Confidence            555666666666666554443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.52  E-value=0.00032  Score=68.14  Aligned_cols=59  Identities=22%  Similarity=0.350  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHH---------------------------HHHhHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDE---------------------------AKEYFNKATLYF   54 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~e---------------------------A~~~~ekA~~~F   54 (152)
                      +++|+..|.++|++||.+..||+-||.+|..+|    |...                           ..+++++|.-||
T Consensus       155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG----d~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy  230 (895)
T KOG2076|consen  155 LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG----DIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY  230 (895)
T ss_pred             HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcc----cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence            789999999999999999999999999999886    3333                           335899999999


Q ss_pred             HHHHHcCCCc
Q 031846           55 QQAVDEEPSN   64 (152)
Q Consensus        55 qkAleldP~N   64 (152)
                      -|||..+|.|
T Consensus       231 ~rAI~~~p~n  240 (895)
T KOG2076|consen  231 SRAIQANPSN  240 (895)
T ss_pred             HHHHhcCCcc
Confidence            9999999999

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.47  E-value=0.00011  Score=50.03  Aligned_cols=44  Identities=20%  Similarity=0.297  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQA   57 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkA   57 (152)
                      +++|+..|++ ++++|.+.+.+|-+|.++..+|           +|++|+++|++|
T Consensus        41 y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~-----------~y~eAi~~l~~~   84 (84)
T PF12895_consen   41 YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG-----------KYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC-----------CHHHHHHHHhcC
Confidence            6899999999 9999999999999999999865           999999999986

>PRK11906 transcriptional regulator; Provisional

Probab=97.46  E-value=0.00041  Score=63.40  Aligned_cols=54  Identities=13%  Similarity=0.032  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      ..+|...-++|+++||.++.|++.+|.++...           ++++.|...|++|+.++|+...
T Consensus       320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~-----------~~~~~a~~~f~rA~~L~Pn~A~  373 (458)
T PRK11906        320 AQKALELLDYVSDITTVDGKILAIMGLITGLS-----------GQAKVSHILFEQAKIHSTDIAS  373 (458)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh-----------cchhhHHHHHHHHhhcCCccHH
Confidence            35788899999999999999999999988754           3799999999999999998863

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.44  E-value=0.00057  Score=66.00  Aligned_cols=53  Identities=9%  Similarity=0.040  Sum_probs=39.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|++.|+++|+++|++.+++..|..+|...+           ++++|++.+++++.++|++
T Consensus       117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~-----------q~~eAl~~l~~l~~~dp~~  169 (822)
T PRK14574        117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAG-----------RGGVVLKQATELAERDPTV  169 (822)
T ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC-----------CHHHHHHHHHHhcccCcch
Confidence            3689999999999999999999998877777643           5555555555555555554

>PRK15331 chaperone protein SicA; Provisional

Probab=97.41  E-value=0.0011  Score=53.35  Aligned_cols=73  Identities=14%  Similarity=0.066  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      ++||...|+-...+||.+++-+..||-++..           +++|++|+++|-.|..++++|+                
T Consensus        53 ~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-----------~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         53 LDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-----------KKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence            7899999999999999999977777777764           5699999999999999999885                


Q ss_pred             -HHHHHHHHHhcCchhhHHHHH
Q 031846           66 -LYQKSLEVAAKAPELHMEIHK   86 (152)
Q Consensus        66 -~YrkaLe~~~kapel~~e~~~   86 (152)
                       ..+++++++-..|+ |.+|.+
T Consensus       122 ~~A~~~f~~a~~~~~-~~~l~~  142 (165)
T PRK15331        122 AKARQCFELVNERTE-DESLRA  142 (165)
T ss_pred             HHHHHHHHHHHhCcc-hHHHHH
Confidence             46667777766666 444444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.00057  Score=59.12  Aligned_cols=53  Identities=28%  Similarity=0.322  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHH
Q 031846            4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELY   67 (152)
Q Consensus         4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Y   67 (152)
                      +||..+.+-|++=+++++||+.|...|.+.           ++|++|.-||++.|-++|-|++|
T Consensus       138 ~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~-----------~~f~kA~fClEE~ll~~P~n~l~  190 (289)
T KOG3060|consen  138 EAIKELNEYLDKFMNDQEAWHELAEIYLSE-----------GDFEKAAFCLEELLLIQPFNPLY  190 (289)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhH-----------hHHHHHHHHHHHHHHcCCCcHHH
Confidence            678888888888889999999999999974           59999999999999999999753

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.39  E-value=0.0029  Score=50.32  Aligned_cols=65  Identities=23%  Similarity=0.370  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHh-cCCC-ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcC
Q 031846            2 ILDAISKLEEALM-VSPN-RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA   77 (152)
Q Consensus         2 ieeAIs~leeAL~-idP~-~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~ka   77 (152)
                      +++-|..|++.++ -.|+ .-+.+|.|...+++++           +|++|+.|....|+.+|+|...+..-++.+++
T Consensus        51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlk-----------eY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~  117 (149)
T KOG3364|consen   51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLK-----------EYSKSLRYVDALLETEPNNRQALELKETIEDK  117 (149)
T ss_pred             HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHh-----------hHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence            5688999999996 4554 4567899999999864           99999999999999999999988887777654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.38  E-value=0.00075  Score=57.36  Aligned_cols=69  Identities=17%  Similarity=0.243  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH-HHHhcCchh
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL-EVAAKAPEL   80 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaL-e~~~kapel   80 (152)
                      .+.||..+-+||+|+|.+-.|+-...-+|.+           .+.|++|++-|++.++++|.+...|++. ++-++.-|-
T Consensus       150 ~e~aI~dcsKaiel~pty~kAl~RRAeayek-----------~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~er  218 (271)
T KOG4234|consen  150 WESAIEDCSKAIELNPTYEKALERRAEAYEK-----------MEKYEEALEDYKKILESDPSRREAREAIARLPPKINER  218 (271)
T ss_pred             HHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHH
Confidence            4689999999999999999999988999876           4799999999999999999988888776 333444443


Q ss_pred             h
Q 031846           81 H   81 (152)
Q Consensus        81 ~   81 (152)
                      +
T Consensus       219 n  219 (271)
T KOG4234|consen  219 N  219 (271)
T ss_pred             H
Confidence            3

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.35  E-value=0.00023  Score=47.35  Aligned_cols=32  Identities=16%  Similarity=0.272  Sum_probs=26.7

Q ss_pred             CChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846           18 NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE   60 (152)
Q Consensus        18 ~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel   60 (152)
                      +-..+|++||.+|..+|           +|++|+++|++|+++
T Consensus         3 ~~a~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~   34 (78)
T PF13424_consen    3 DTANAYNNLARVYRELG-----------RYDEALDYYEKALDI   34 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Confidence            34578999999999865           999999999999976

...

>PRK11906 transcriptional regulator; Provisional

Probab=97.32  E-value=0.00048  Score=62.98  Aligned_cols=53  Identities=15%  Similarity=0.171  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      ++.|+..|++|+.+||+.+++||.+|.++...           ++.++|.+++++|++++|--.
T Consensus       354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~-----------G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHN-----------EKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhccCchhh
Confidence            57899999999999999999999999998865           499999999999999999763

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.25  E-value=0.0031  Score=45.32  Aligned_cols=56  Identities=23%  Similarity=0.313  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc--HHHHHHH
Q 031846            5 AISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN--ELYQKSL   71 (152)
Q Consensus         5 AIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N--e~YrkaL   71 (152)
                      .++.++++++.||++.++.|.|+.++...           +++++|++-+-..|..+|+.  +..|+.|
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~-----------g~~e~Al~~Ll~~v~~dr~~~~~~ar~~l   64 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAA-----------GDYEEALDQLLELVRRDRDYEDDAARKRL   64 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHT-----------T-HHHHHHHHHHHHCC-TTCCCCHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHhCccccccHHHHHH
Confidence            57889999999999999999999999865           59999999999999999976  4555543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.20  E-value=0.0026  Score=47.04  Aligned_cols=65  Identities=23%  Similarity=0.345  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---HHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---LYQKS   70 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---~Yrka   70 (152)
                      +++|+..+++++.+||-+..+|..|-.+|...|    +..+|...|++....|.+-+.+.|+.+   +|++.
T Consensus        78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g----~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~i  145 (146)
T PF03704_consen   78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQG----RRAEALRVYERYRRRLREELGIEPSPETRALYREI  145 (146)
T ss_dssp             HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCc----CHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHh
Confidence            689999999999999999999999999999877    567888888888888888899999875   45544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.00036  Score=63.71  Aligned_cols=53  Identities=23%  Similarity=0.266  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|++.--..|++|+++.+|++--|.+++..           .+.++|+..|++||.++|+|.
T Consensus       185 ~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~-----------~~~~ka~~hf~qal~ldpdh~  237 (486)
T KOG0550|consen  185 YDEAQSEAIDILKLDATNAEALYVRGLCLYYN-----------DNADKAINHFQQALRLDPDHQ  237 (486)
T ss_pred             chhHHHHHHHHHhcccchhHHHHhcccccccc-----------cchHHHHHHHhhhhccChhhh
Confidence            46788888888999999999999999999864           489999999999999999985

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.15  E-value=0.0031  Score=52.02  Aligned_cols=63  Identities=19%  Similarity=0.162  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccC-----------------CCChH----------HHHHhHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFL-----------------TPDQD----------EAKEYFNKATLYF   54 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l-----------------~pd~~----------eA~~~~ekA~~~F   54 (152)
                      +++|+..++++|+.+|++..++.. +.++...|..                 .|+..          ...+++++|...|
T Consensus        59 ~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~  137 (355)
T cd05804          59 LPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAA  137 (355)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            678899999999999998877664 3333322211                 11111          1234799999999


Q ss_pred             HHHHHcCCCcH
Q 031846           55 QQAVDEEPSNE   65 (152)
Q Consensus        55 qkAleldP~Ne   65 (152)
                      +++++++|++.
T Consensus       138 ~~al~~~p~~~  148 (355)
T cd05804         138 RRALELNPDDA  148 (355)
T ss_pred             HHHHhhCCCCc
Confidence            99999999985

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.15  E-value=0.0033  Score=47.54  Aligned_cols=53  Identities=21%  Similarity=0.273  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .++||..|++||+.....   .+++..||.+|..+|           ++++|+..|+++++..|+++
T Consensus        17 ~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG-----------~~deA~~~L~~~~~~~p~~~   72 (120)
T PF12688_consen   17 EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG-----------RYDEALALLEEALEEFPDDE   72 (120)
T ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCCCcc
Confidence            479999999999975444   679999999999876           99999999999999999843

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.05  E-value=0.00074  Score=41.60  Aligned_cols=28  Identities=21%  Similarity=0.245  Sum_probs=26.2

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGN   28 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGn   28 (152)
                      .+++|+..|+++|+.+|++.+++..||.
T Consensus        16 ~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen   16 QPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4789999999999999999999999985

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.05  E-value=0.0012  Score=64.70  Aligned_cols=63  Identities=14%  Similarity=0.061  Sum_probs=52.4

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA   75 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~   75 (152)
                      +.++|+..|+++|++||+++.++.|+|-.|..            .++++|.+++.|||...=++..|...+++=+
T Consensus       131 ~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae------------~dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~  193 (906)
T PRK14720        131 ENKKLKGVWERLVKADRDNPEIVKKLATSYEE------------EDKEKAITYLKKAIYRFIKKKQYVGIEEIWS  193 (906)
T ss_pred             ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence            35789999999999999999999999988874            2899999999999998888877777775433

>PRK15331 chaperone protein SicA; Provisional

Probab=96.99  E-value=0.0021  Score=51.77  Aligned_cols=53  Identities=15%  Similarity=0.131  Sum_probs=48.5

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++||..|-.|..++++++..+|..|..|..+|           +.++|..||+-|++ +|++.
T Consensus        86 ~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~-----------~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331         86 QFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR-----------KAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             HHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC-----------CHHHHHHHHHHHHh-CcchH
Confidence            3789999999999999999999999999999765           99999999999999 67664

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.96  E-value=0.0016  Score=37.95  Aligned_cols=30  Identities=20%  Similarity=0.261  Sum_probs=24.2

Q ss_pred             hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846           20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE   60 (152)
Q Consensus        20 ~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel   60 (152)
                      ..++.|||++|..+|           ++++|..+|++|+++
T Consensus         2 a~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQG-----------RYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhh-----------hcchhhHHHHHHHHH
Confidence            367899999999865           888888888888865

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.0028  Score=55.00  Aligned_cols=56  Identities=25%  Similarity=0.283  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +.+|...|.+|++|.|++.+.+--+|.+++.++        -...-.+|.+.|++||.+||.|-
T Consensus       172 ~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a--------~~~~ta~a~~ll~~al~~D~~~i  227 (287)
T COG4235         172 ASDALLAYRNALRLAGDNPEILLGLAEALYYQA--------GQQMTAKARALLRQALALDPANI  227 (287)
T ss_pred             hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--------CCcccHHHHHHHHHHHhcCCccH
Confidence            456777777777777777777777777776542        02255566677777777777763

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.0017  Score=59.44  Aligned_cols=52  Identities=15%  Similarity=0.075  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHhcCCCChH----HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPNRHD----TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~d----A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +.+|-++|.+||.|||++-+    .|+|++.++.++|           +.++|+.-.+.|+.|||..
T Consensus       265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg-----------rl~eaisdc~~Al~iD~sy  320 (486)
T KOG0550|consen  265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG-----------RLREAISDCNEALKIDSSY  320 (486)
T ss_pred             hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC-----------CchhhhhhhhhhhhcCHHH
Confidence            56788889999999988544    4888888888876           7778888888888888765

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.0032  Score=59.20  Aligned_cols=54  Identities=26%  Similarity=0.327  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHH----hcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            2 ILDAISKLEEAL----MVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         2 ieeAIs~leeAL----~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      +.+|+..|+.+|    .+++++   +..+.|||-+|.+++           .|++|+.|||+||.+.|.|..
T Consensus       430 y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~-----------~~~eAI~~~q~aL~l~~k~~~  490 (611)
T KOG1173|consen  430 YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN-----------KYEEAIDYYQKALLLSPKDAS  490 (611)
T ss_pred             hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh-----------hHHHHHHHHHHHHHcCCCchh
Confidence            678999999999    344443   456889999999864           999999999999999999963

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.82  E-value=0.0081  Score=47.24  Aligned_cols=66  Identities=17%  Similarity=0.189  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHhcCCC---ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-----HHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSLEV   73 (152)
Q Consensus         2 ieeAIs~leeAL~idP~---~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne-----~YrkaLe~   73 (152)
                      |++||..|++...--|-   ...|...||-+|...           ++|++|+..|++=++++|.|+     .|+++|--
T Consensus        26 Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~-----------~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~   94 (142)
T PF13512_consen   26 YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ-----------GDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY   94 (142)
T ss_pred             HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence            78999999999876554   668899999999975           499999999999999999997     79999866


Q ss_pred             HhcCc
Q 031846           74 AAKAP   78 (152)
Q Consensus        74 ~~kap   78 (152)
                      .....
T Consensus        95 ~~~~~   99 (142)
T PF13512_consen   95 YEQDE   99 (142)
T ss_pred             HHHhh
Confidence            65543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.82  E-value=0.0039  Score=49.61  Aligned_cols=65  Identities=18%  Similarity=0.201  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHHHhcCCC---ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-----HHHHHHH
Q 031846            1 MILDAISKLEEALMVSPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSLE   72 (152)
Q Consensus         1 mieeAIs~leeAL~idP~---~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne-----~YrkaLe   72 (152)
                      .+++||..|++.+...|.   -.+|.+.||.++...           ++|++|+..|++-++..|+++     .|..++.
T Consensus        20 ~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~-----------~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~   88 (203)
T PF13525_consen   20 DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ-----------GDYEEAIAAYERFIKLYPNSPKADYALYMLGLS   88 (203)
T ss_dssp             -HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT-----------T-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence            378999999999998776   467899999999975           499999999999999999986     4666654


Q ss_pred             HHhc
Q 031846           73 VAAK   76 (152)
Q Consensus        73 ~~~k   76 (152)
                      ....
T Consensus        89 ~~~~   92 (203)
T PF13525_consen   89 YYKQ   92 (203)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            4433

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=0.0057  Score=53.02  Aligned_cols=57  Identities=23%  Similarity=0.216  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      ||+.|+=+||+.|-++|-++--+-.|+.+++-+|-        .++++-|.+||.+||+++|.|.
T Consensus       169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg--------~eN~~~arkyy~~alkl~~~~~  225 (289)
T KOG3060|consen  169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG--------AENLELARKYYERALKLNPKNL  225 (289)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHhChHhH
Confidence            58899999999999999999999999999876663        4799999999999999999774

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=96.79  E-value=0.005  Score=59.27  Aligned_cols=53  Identities=30%  Similarity=0.337  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      |+++..+|+..|++||-..+.||++|-+..++           ++++.|.+||.+++.++|+|-
T Consensus       501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALql-----------ek~q~av~aF~rcvtL~Pd~~  553 (777)
T KOG1128|consen  501 FSEADKHLERSLEINPLQLGTWFGLGCAALQL-----------EKEQAAVKAFHRCVTLEPDNA  553 (777)
T ss_pred             HHHHHHHHHHHhhcCccchhHHHhccHHHHHH-----------hhhHHHHHHHHHHhhcCCCch
Confidence            78999999999999999999999999999864           699999999999999999995

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.78  E-value=0.0022  Score=55.12  Aligned_cols=51  Identities=22%  Similarity=0.305  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      -|.-.|.++|.|+|+-++++..||.-++.-           ++|+-|.+.|.-.+++||.++
T Consensus        83 LAR~DftQaLai~P~m~~vfNyLG~Yl~~a-----------~~fdaa~eaFds~~ELDp~y~  133 (297)
T COG4785          83 LARNDFSQALAIRPDMPEVFNYLGIYLTQA-----------GNFDAAYEAFDSVLELDPTYN  133 (297)
T ss_pred             HHhhhhhhhhhcCCCcHHHHHHHHHHHHhc-----------ccchHHHHHhhhHhccCCcch
Confidence            466789999999999999999999999863           699999999999999999987

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.77  E-value=0.0032  Score=57.23  Aligned_cols=72  Identities=21%  Similarity=0.091  Sum_probs=56.8

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCC---CChH--------------------HHHHhHHHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLT---PDQD--------------------EAKEYFNKATLYFQQA   57 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~---pd~~--------------------eA~~~~ekA~~~FqkA   57 (152)
                      .|+|||.+|-+++.++|-++-.|-|...||.++..+-   .|-.                    +++++.++|.+-++.+
T Consensus       112 Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~v  191 (536)
T KOG4648|consen  112 KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETV  191 (536)
T ss_pred             chhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHH
Confidence            3799999999999999999999999999997763221   0111                    1335889999999999


Q ss_pred             HHcCCCcHHHHHHHH
Q 031846           58 VDEEPSNELYQKSLE   72 (152)
Q Consensus        58 leldP~Ne~YrkaLe   72 (152)
                      |+++|++-..+|.+.
T Consensus       192 L~LEP~~~ELkK~~a  206 (536)
T KOG4648|consen  192 LALEPKNIELKKSLA  206 (536)
T ss_pred             HhhCcccHHHHHHHH
Confidence            999999877777763

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=96.69  E-value=0.0054  Score=58.44  Aligned_cols=76  Identities=18%  Similarity=0.181  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH-HHHH--HHHHhcCch
Q 031846            3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL-YQKS--LEVAAKAPE   79 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~-Yrka--Le~~~kape   79 (152)
                      +||-+....+|+.|+..+-.|--||..+.+           ..+|++|+.||+.||.++|+|.. +|..  |+.-.-..+
T Consensus        58 ~ea~~~vr~glr~d~~S~vCwHv~gl~~R~-----------dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~  126 (700)
T KOG1156|consen   58 EEAYELVRLGLRNDLKSHVCWHVLGLLQRS-----------DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE  126 (700)
T ss_pred             HHHHHHHHHHhccCcccchhHHHHHHHHhh-----------hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence            688899999999999999999999999875           35999999999999999999974 3332  233333344


Q ss_pred             hhHHHHHhhh
Q 031846           80 LHMEIHKHGL   89 (152)
Q Consensus        80 l~~e~~~~~~   89 (152)
                      ...+--++++
T Consensus       127 ~~~~tr~~LL  136 (700)
T KOG1156|consen  127 GYLETRNQLL  136 (700)
T ss_pred             hHHHHHHHHH
Confidence            4444444443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.68  E-value=0.004  Score=59.52  Aligned_cols=64  Identities=27%  Similarity=0.258  Sum_probs=55.7

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA   75 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~   75 (152)
                      |..||-..|.++|.|+-.-+-.+|-+||+|.-+           .+.++|++.|++|++++|+|...++.|....
T Consensus       657 ~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l-----------~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  657 LHLDATKLLLQALAINSSEPLTFLSLGNAYLAL-----------KNISGALEAFRQALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             hhccHHHHHHHHHhhcccCchHHHhcchhHHHH-----------hhhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence            556888999999999988888899999999854           5999999999999999999998888886554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.62  E-value=0.0029  Score=59.28  Aligned_cols=74  Identities=24%  Similarity=0.176  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc--HHHHH-----HHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN--ELYQK-----SLEVA   74 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N--e~Yrk-----aLe~~   74 (152)
                      ++.|.+.|.+||.-|..-.+|+||+|..+-.+           ++.|+|++||-|--.+=-+|  -+|+.     +||-.
T Consensus       506 ~dka~~~ykeal~ndasc~ealfniglt~e~~-----------~~ldeald~f~klh~il~nn~evl~qianiye~led~  574 (840)
T KOG2003|consen  506 LDKAAEFYKEALNNDASCTEALFNIGLTAEAL-----------GNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP  574 (840)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHhcccHHHh-----------cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence            68999999999999999999999999998765           59999999998854443333  34543     45666


Q ss_pred             hcCchhhHHHHH
Q 031846           75 AKAPELHMEIHK   86 (152)
Q Consensus        75 ~kapel~~e~~~   86 (152)
                      .+|.|+.++...
T Consensus       575 aqaie~~~q~~s  586 (840)
T KOG2003|consen  575 AQAIELLMQANS  586 (840)
T ss_pred             HHHHHHHHHhcc
Confidence            778888776543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.59  E-value=0.0096  Score=50.75  Aligned_cols=54  Identities=22%  Similarity=0.159  Sum_probs=45.6

Q ss_pred             CHHHHHHHHHHHHhcCCCChH-----HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHD-----TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~d-----A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .|++|.++|.+||++=|.-..     .|-|.|.|+.++           +.++.|++-.-|||+|+|.++
T Consensus       110 dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl-----------~k~e~aI~dcsKaiel~pty~  168 (271)
T KOG4234|consen  110 DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL-----------RKWESAIEDCSKAIELNPTYE  168 (271)
T ss_pred             cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh-----------hhHHHHHHHHHhhHhcCchhH
Confidence            378999999999999998544     466778888875           589999999999999999774

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.58  E-value=0.0051  Score=52.37  Aligned_cols=55  Identities=31%  Similarity=0.265  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      ++||.+.+++||+.||++.+++.||..+...+|          ...+.+.+++++....+|+|+.
T Consensus       217 ~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g----------k~~~~~~~~l~qL~~~~p~h~~  271 (290)
T PF04733_consen  217 YEEAEELLEEALEKDPNDPDTLANLIVCSLHLG----------KPTEAAERYLSQLKQSNPNHPL  271 (290)
T ss_dssp             HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-----------TCHHHHHHHHHCHHHTTTSHH
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC----------CChhHHHHHHHHHHHhCCCChH
Confidence            455666666666666666666666655555443          1224444555555555555553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR00540 hemY_coli hemY protein

Probab=96.58  E-value=0.014  Score=50.84  Aligned_cols=63  Identities=10%  Similarity=0.007  Sum_probs=51.9

Q ss_pred             HHHHHHHHHhcCC----CChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHh
Q 031846            5 AISKLEEALMVSP----NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSLEVAA   75 (152)
Q Consensus         5 AIs~leeAL~idP----~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne-----~YrkaLe~~~   75 (152)
                      ++..++++.+..|    ++.+++++++.++...|           ++++|.+..+++++.+|++.     .++....+.+
T Consensus       244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g-----------~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~  312 (409)
T TIGR00540       244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD-----------DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP  312 (409)
T ss_pred             CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC-----------ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC
Confidence            4558888898888    58999999999998765           99999999999999999998     6666666654


Q ss_pred             cCc
Q 031846           76 KAP   78 (152)
Q Consensus        76 kap   78 (152)
                      ..+
T Consensus       313 ~~~  315 (409)
T TIGR00540       313 EDN  315 (409)
T ss_pred             CCh
Confidence            433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.55  E-value=0.0067  Score=59.57  Aligned_cols=69  Identities=13%  Similarity=0.112  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH-------------HHHH
Q 031846            4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL-------------YQKS   70 (152)
Q Consensus         4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~-------------Yrka   70 (152)
                      .+++.|-..|..-+.+-.|++.||.+|.++|           ++++|...|+++|++||+|..             -.+|
T Consensus       100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g-----------~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA  168 (906)
T PRK14720        100 AIVEHICDKILLYGENKLALRTLAEAYAKLN-----------ENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKA  168 (906)
T ss_pred             hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHH
Confidence            4566666666667777799999999999865           999999999999999999973             3455


Q ss_pred             HHHHhcCchhhHH
Q 031846           71 LEVAAKAPELHME   83 (152)
Q Consensus        71 Le~~~kapel~~e   83 (152)
                      ++++.||.+.+..
T Consensus       169 ~~m~~KAV~~~i~  181 (906)
T PRK14720        169 ITYLKKAIYRFIK  181 (906)
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666665543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.46  E-value=0.0063  Score=48.96  Aligned_cols=52  Identities=15%  Similarity=0.114  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +++|++.|.++|.+-|+.+.||.|...+|.-+|           +-++|++-..+||++--+-
T Consensus        59 Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~-----------~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   59 LDGALELFGQALCLAPERASAYNNRAQALRLQG-----------DDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             hHHHHHHHHHHHHhcccchHhhccHHHHHHHcC-----------ChHHHHHHHHHHHHhcCcc
Confidence            689999999999999999999999999998654           7788888888888876543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.44  E-value=0.0055  Score=39.41  Aligned_cols=39  Identities=15%  Similarity=0.299  Sum_probs=29.7

Q ss_pred             HHhHHHHHHHHHHHHHcCCCcHH--------------HHHHHHHHhcCchhhH
Q 031846           44 KEYFNKATLYFQQAVDEEPSNEL--------------YQKSLEVAAKAPELHM   82 (152)
Q Consensus        44 ~~~~ekA~~~FqkAleldP~Ne~--------------YrkaLe~~~kapel~~   82 (152)
                      .++|++|+++|+++++.+|+|..              |.++.++..+.+..++
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~   56 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP   56 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            46999999999999999999973              5555566555555443

...

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.35  E-value=0.015  Score=49.89  Aligned_cols=66  Identities=18%  Similarity=0.332  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCc
Q 031846            2 ILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAP   78 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kap   78 (152)
                      |.+|+..|..-|+-=|+.   ++|+|-||.+++.+|           +|+.|...|.+++.--|+++          |||
T Consensus       157 y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg-----------~y~~Aa~~f~~~~k~~P~s~----------KAp  215 (262)
T COG1729         157 YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG-----------DYEDAAYIFARVVKDYPKSP----------KAP  215 (262)
T ss_pred             HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc-----------cchHHHHHHHHHHHhCCCCC----------CCh
Confidence            679999999999988874   689999999999765           99999999999999999874          667


Q ss_pred             hhhHHHHHhh
Q 031846           79 ELHMEIHKHG   88 (152)
Q Consensus        79 el~~e~~~~~   88 (152)
                      |..+.|..-+
T Consensus       216 dallKlg~~~  225 (262)
T COG1729         216 DALLKLGVSL  225 (262)
T ss_pred             HHHHHHHHHH
Confidence            6666666544

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=96.32  E-value=0.0056  Score=56.61  Aligned_cols=81  Identities=26%  Similarity=0.320  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHhc--------CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc---------
Q 031846            2 ILDAISKLEEALMV--------SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN---------   64 (152)
Q Consensus         2 ieeAIs~leeAL~i--------dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N---------   64 (152)
                      +++|+..|++||.|        +|.-..+|.||+.+|.+.|.    .+||+..+++|++.+++-+-.++..         
T Consensus       257 ~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GK----f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~  332 (508)
T KOG1840|consen  257 YDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGK----FAEAEEYCERALEIYEKLLGASHPEVAAQLSELA  332 (508)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCC----hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence            67899999999865        45556679999999998762    2445555555555555411112211         


Q ss_pred             -------------HHHHHHHHHHhcCchh-hHHHHH
Q 031846           65 -------------ELYQKSLEVAAKAPEL-HMEIHK   86 (152)
Q Consensus        65 -------------e~YrkaLe~~~kapel-~~e~~~   86 (152)
                                   ..|++++++..++|+- |..+.+
T Consensus       333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~  368 (508)
T KOG1840|consen  333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK  368 (508)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence                         1588888888766643 324444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.30  E-value=0.004  Score=40.59  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=20.3

Q ss_pred             HHhHHHHHHHHHHHHHcCCCcH
Q 031846           44 KEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus        44 ~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .++|++|++++++++.++|++.
T Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~   29 (73)
T PF13371_consen    8 QEDYEEALEVLERALELDPDDP   29 (73)
T ss_pred             CCCHHHHHHHHHHHHHhCcccc
Confidence            3599999999999999999985

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.28  E-value=0.016  Score=56.14  Aligned_cols=21  Identities=19%  Similarity=0.521  Sum_probs=15.5

Q ss_pred             HhHHHHHHHHHHHHHcCCCcH
Q 031846           45 EYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus        45 ~~~ekA~~~FqkAleldP~Ne   65 (152)
                      ++|++|++.|+++++++|+|+
T Consensus       116 gdyd~Aiely~kaL~~dP~n~  136 (822)
T PRK14574        116 KRWDQALALWQSSLKKDPTNP  136 (822)
T ss_pred             CCHHHHHHHHHHHHhhCCCCH
Confidence            477777777777777777775

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.02  Score=51.82  Aligned_cols=74  Identities=16%  Similarity=0.173  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHhcCC-------C--------ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-
Q 031846            2 ILDAISKLEEALMVSP-------N--------RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP-------~--------~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne-   65 (152)
                      |+.|+..|++|+..=.       +        .--+|-||...|.++           .+|.+|+.+..++|+++|+|. 
T Consensus       224 ~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl-----------~~~~~Ai~~c~kvLe~~~~N~K  292 (397)
T KOG0543|consen  224 FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKL-----------KEYKEAIESCNKVLELDPNNVK  292 (397)
T ss_pred             HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhh-----------hhHHHHHHHHHHHHhcCCCchh
Confidence            6789999999875322       1        113588888888875           499999999999999999996 


Q ss_pred             --------------------HHHHHHHHHhcCchhhHHHHH
Q 031846           66 --------------------LYQKSLEVAAKAPELHMEIHK   86 (152)
Q Consensus        66 --------------------~YrkaLe~~~kapel~~e~~~   86 (152)
                                          .+++++++.+..-+.+.||-+
T Consensus       293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~  333 (397)
T KOG0543|consen  293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK  333 (397)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence                                355556666655555655543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.16  E-value=0.0081  Score=54.02  Aligned_cols=53  Identities=23%  Similarity=0.356  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .|.|...|+.||.++|++.+++...|...-..           .+.-+|-.||-|||.++|.|+
T Consensus       132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~-----------~~iv~ADq~Y~~ALtisP~ns  184 (472)
T KOG3824|consen  132 LEKAMTLFEHALALAPTNPQILIEMGQFREMH-----------NEIVEADQCYVKALTISPGNS  184 (472)
T ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh-----------hhhHhhhhhhheeeeeCCCch
Confidence            47899999999999999999999999987653           588899999999999999997

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=96.05  E-value=0.016  Score=52.72  Aligned_cols=78  Identities=23%  Similarity=0.264  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccC-------------CCChHHHH----------HhHHHHHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFL-------------TPDQDEAK----------EYFNKATLYFQQAV   58 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l-------------~pd~~eA~----------~~~ekA~~~FqkAl   58 (152)
                      +-+|.+.|..|++.||++-.|+|..+-+|..+|..             .||-..|.          +.+|+|..-|.+.|
T Consensus        54 ~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl  133 (504)
T KOG0624|consen   54 LSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVL  133 (504)
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHH
Confidence            57899999999999999999999999999877643             34444433          48999999999999


Q ss_pred             HcCCCcHHHHHHHHHHhcCch
Q 031846           59 DEEPSNELYQKSLEVAAKAPE   79 (152)
Q Consensus        59 eldP~Ne~YrkaLe~~~kape   79 (152)
                      ..+|+|..-..+.+-....-|
T Consensus       134 ~~~~s~~~~~eaqskl~~~~e  154 (504)
T KOG0624|consen  134 QHEPSNGLVLEAQSKLALIQE  154 (504)
T ss_pred             hcCCCcchhHHHHHHHHhHHH
Confidence            999999877777666555444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.04  E-value=0.042  Score=50.81  Aligned_cols=54  Identities=20%  Similarity=0.200  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      ..+|++.|++++.++|+..-...++|++|...|           ++.+|+...++.+..+|+|+.
T Consensus       356 ~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g-----------~~~eai~~L~~~~~~~p~dp~  409 (484)
T COG4783         356 AKEAIERLKKALALDPNSPLLQLNLAQALLKGG-----------KPQEAIRILNRYLFNDPEDPN  409 (484)
T ss_pred             hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC-----------ChHHHHHHHHHHhhcCCCCch
Confidence            578999999999999999889999999999865           888999999999999999974

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.01  E-value=0.026  Score=42.13  Aligned_cols=44  Identities=23%  Similarity=0.194  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQ   56 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~Fqk   56 (152)
                      +++|+..|++++...|+.   ..+.++|+.++...           ++|++|+..+++
T Consensus        64 ~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~-----------~~~d~Al~~L~~  110 (145)
T PF09976_consen   64 YDEAKAALEKALANAPDPELKPLARLRLARILLQQ-----------GQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHh
Confidence            789999999999977665   46888889888865           499999999866

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=95.99  E-value=0.03  Score=54.94  Aligned_cols=51  Identities=16%  Similarity=0.178  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP   62 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP   62 (152)
                      +|+.|+-+|.+||+.+|.+-+-+|.-...|.+.|           +..+|+++|++.+.++|
T Consensus       222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G-----------~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTG-----------DLKRAMETFLQLLQLDP  272 (895)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-----------hHHHHHHHHHHHHhhCC
Confidence            5889999999999999999999999999999876           89999999999999999

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.98  E-value=0.029  Score=44.12  Aligned_cols=70  Identities=16%  Similarity=0.129  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHhcCCCChH---HHHHhHHHHHhccc----CCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHD---TLWCLGNAHTSHAF----LTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKS   70 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~d---A~~nLGnAy~~~g~----l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yrka   70 (152)
                      .+++|+..+++.|+++|+|..   |+|-.|+++..+.-    ..+..+.=.....+|...|++-|+.=|+++-...+
T Consensus        62 ~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA  138 (142)
T PF13512_consen   62 DYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA  138 (142)
T ss_pred             CHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence            378999999999999999865   58888999987531    00011111235789999999999999998765544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.97  E-value=0.04  Score=45.63  Aligned_cols=71  Identities=14%  Similarity=0.185  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHHHHhcCCCCh---HHHHHhHHHHHhcc------cCCCChHH-HHHhHHHHHHHHHHHHHcCCCcHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRH---DTLWCLGNAHTSHA------FLTPDQDE-AKEYFNKATLYFQQAVDEEPSNELYQKS   70 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~---dA~~nLGnAy~~~g------~l~pd~~e-A~~~~ekA~~~FqkAleldP~Ne~Yrka   70 (152)
                      .+++|+..|++.++++|+++   .|+|.+|+++..++      +...|..+ -...-.+|+..|++-|+.-|+.+-...+
T Consensus        84 ~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A  163 (243)
T PRK10866         84 DLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA  163 (243)
T ss_pred             CHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence            37899999999999999874   56999999875443      11111111 1234568999999999999988755444


Q ss_pred             H
Q 031846           71 L   71 (152)
Q Consensus        71 L   71 (152)
                      .
T Consensus       164 ~  164 (243)
T PRK10866        164 T  164 (243)
T ss_pred             H
Confidence            3

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.97  E-value=0.036  Score=50.26  Aligned_cols=89  Identities=27%  Similarity=0.324  Sum_probs=67.6

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCC-------------------------hHHHHHhHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPD-------------------------QDEAKEYFNKATLYFQ   55 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd-------------------------~~eA~~~~ekA~~~Fq   55 (152)
                      |+.+|...|+.+|+.-| +.|.+-.|..+|.+..  .|.                         ..||.+++++|+++|+
T Consensus       238 m~r~AekqlqssL~q~~-~~dTfllLskvY~rid--QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk  314 (478)
T KOG1129|consen  238 MPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRID--QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYK  314 (478)
T ss_pred             ChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhc--cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHH
Confidence            67778888888887665 4577777777776531  111                         1347789999999999


Q ss_pred             HHHHcCCCcH---------------------HHHHHHHHHhcCchhhHHHHHh-hhccC
Q 031846           56 QAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIHKH-GLGQQ   92 (152)
Q Consensus        56 kAleldP~Ne---------------------~YrkaLe~~~kapel~~e~~~~-~~~q~   92 (152)
                      ++++++|.|-                     -||+.|.|=..+|||..+|+-- +.+||
T Consensus       315 ~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ  373 (478)
T KOG1129|consen  315 LVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ  373 (478)
T ss_pred             HHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc
Confidence            9999999993                     4999999999999999999863 34444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=95.91  E-value=0.041  Score=47.95  Aligned_cols=54  Identities=13%  Similarity=0.005  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHH-HhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLW-CLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~-nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      +++|...|++|.+.+|++.-+.. ..+..+...           +++++|...++++++.+|+|+.
T Consensus       134 ~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~-----------g~~~~Al~~l~~~~~~~P~~~~  188 (398)
T PRK10747        134 EARANQHLERAAELADNDQLPVEITRVRIQLAR-----------NENHAARHGVDKLLEVAPRHPE  188 (398)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhcCCCCHH
Confidence            57788888888888888754433 336666554           4888888888888888888863

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=95.89  E-value=0.082  Score=39.42  Aligned_cols=53  Identities=19%  Similarity=0.200  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            3 LDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         3 eeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      ..+...+++.++-+|+.   ..+.+.|+.++...|           +|++|+..|+++++..|++.+
T Consensus        28 ~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g-----------~~~~A~~~l~~~~~~~~d~~l   83 (145)
T PF09976_consen   28 AKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG-----------DYDEAKAALEKALANAPDPEL   83 (145)
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhhCCCHHH
Confidence            45566788999999998   778888999998754           999999999999999887753

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.84  E-value=0.0057  Score=34.99  Aligned_cols=19  Identities=21%  Similarity=0.324  Sum_probs=16.8

Q ss_pred             CHHHHHHHHHHHHhcCCCC
Q 031846            1 MILDAISKLEEALMVSPNR   19 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~   19 (152)
                      ++++|+..|++||++||++
T Consensus        16 ~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen   16 DYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHHHSTTH
T ss_pred             CchHHHHHHHHHHHHCcCC
Confidence            4789999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.84  E-value=0.01  Score=53.64  Aligned_cols=63  Identities=21%  Similarity=0.209  Sum_probs=50.5

Q ss_pred             CHHHHHHHHHHHHhc---CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846            1 MILDAISKLEEALMV---SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   74 (152)
Q Consensus         1 mieeAIs~leeAL~i---dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~   74 (152)
                      .||-+...|++||..   +-..+|.|||||-+..--           ++|--|..||+-||.-||+|...-.+|.+.
T Consensus       373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~i-----------GD~nlA~rcfrlaL~~d~~h~ealnNLavL  438 (478)
T KOG1129|consen  373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTI-----------GDFNLAKRCFRLALTSDAQHGEALNNLAVL  438 (478)
T ss_pred             chhhhHHHHHHHHhhccCcchhhhhhhccceeEEec-----------cchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence            367788999999964   335788999999887654           599999999999999999998666666544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.82  E-value=0.0044  Score=51.53  Aligned_cols=51  Identities=22%  Similarity=0.201  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHhc--CCC----ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846            2 ILDAISKLEEALMV--SPN----RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP   62 (152)
Q Consensus         2 ieeAIs~leeAL~i--dP~----~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP   62 (152)
                      +++|+..|++|+++  .-.    -+.++.++|.+|...          .+++++|+++|++|+++--
T Consensus        90 ~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~----------~~d~e~Ai~~Y~~A~~~y~  146 (282)
T PF14938_consen   90 PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ----------LGDYEKAIEYYQKAAELYE  146 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT----------T--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHH
Confidence            57899999999976  222    245688889998764          0488899999999888743

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.82  E-value=0.046  Score=37.31  Aligned_cols=51  Identities=25%  Similarity=0.449  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHhcCCC-ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846            2 ILDAISKLEEALMVSPN-RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS   63 (152)
Q Consensus         2 ieeAIs~leeAL~idP~-~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~   63 (152)
                      +++|+..+++++.+.+. ...++.+++..+...+           ++++|+.+|.+++...|+
T Consensus       183 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLG-----------KYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc-----------cHHHHHHHHHHHHhhCcc
Confidence            57888888889988888 6888888888887643           788999999999999997

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=95.80  E-value=0.04  Score=50.92  Aligned_cols=64  Identities=19%  Similarity=0.148  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA   75 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~   75 (152)
                      ++++|+..|++.-..-.+.-..+=..|..|.++|           ++++|...|.+-|+.||+|-.|-..|+.+-
T Consensus        19 ~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg-----------~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen   19 DYEEALEHLEKNEKQILDKLAVLEKRAELLLKLG-----------RKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             CHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            4789999999999999999888888999999876           999999999999999999999888887664

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=95.74  E-value=0.037  Score=49.63  Aligned_cols=68  Identities=25%  Similarity=0.258  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH--------------HH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------------LY   67 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne--------------~Y   67 (152)
                      -.+||..++++|+.+|.+.+.+...+..+.+.           ++++.|+++.++|+++.|++-              .|
T Consensus       216 E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k-----------~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~  284 (395)
T PF09295_consen  216 EVEAIRLLNEALKENPQDSELLNLQAEFLLSK-----------KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDF  284 (395)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence            36899999999999999988888888888764           589999999999999999884              47


Q ss_pred             HHHHHHHhcCchh
Q 031846           68 QKSLEVAAKAPEL   80 (152)
Q Consensus        68 rkaLe~~~kapel   80 (152)
                      ++||-.....|-+
T Consensus       285 e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  285 ENALLALNSCPML  297 (395)
T ss_pred             HHHHHHHhcCcCC
Confidence            7888777666654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=95.73  E-value=0.038  Score=53.55  Aligned_cols=53  Identities=23%  Similarity=0.155  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      ++|-.++.+|=.++|-.+..||-.|..+..           ++++++|.++|.-|+.+||+|..
T Consensus       667 ~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~-----------~~~~~EA~~af~~Al~ldP~hv~  719 (799)
T KOG4162|consen  667 DEARSCLLEASKIDPLSASVYYLRGLLLEV-----------KGQLEEAKEAFLVALALDPDHVP  719 (799)
T ss_pred             hHHHHHHHHHHhcchhhHHHHHHhhHHHHH-----------HHhhHHHHHHHHHHHhcCCCCcH
Confidence            678889999999999999999999999875           46999999999999999999963

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=95.72  E-value=0.033  Score=55.65  Aligned_cols=77  Identities=18%  Similarity=0.097  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchhh
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELH   81 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel~   81 (152)
                      .++|.+.|-.|.+++|++--||-.|||.|.+..-        -..++++..||++++.+.|+.+ -.+-.++..|-+..+
T Consensus        53 le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~d--------Il~ld~~~~~yq~~~l~le~q~-~nk~~~lcKk~~d~~  123 (1238)
T KOG1127|consen   53 LEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYND--------ILDLDRAAKCYQRAVLILENQS-KNKGEALCKKFDDQY  123 (1238)
T ss_pred             HHHHHHHHHHHHhcChhhhHHHHHHHHHHHccch--------hhhhhHhHHHHHHHHHhhhhhh-hhHHHHHHHHHhhHH
Confidence            5899999999999999999999999999986321        2489999999999999999766 223334444444443


Q ss_pred             HHHHHh
Q 031846           82 MEIHKH   87 (152)
Q Consensus        82 ~e~~~~   87 (152)
                      -++-+|
T Consensus       124 ~~fk~h  129 (1238)
T KOG1127|consen  124 YQFKKH  129 (1238)
T ss_pred             HHHHHH
Confidence            333333

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=95.68  E-value=0.032  Score=55.22  Aligned_cols=58  Identities=26%  Similarity=0.376  Sum_probs=50.1

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      |-+.|+..|++||+|||...+|+.-||..-..+.    |    -+.+.+|+..+++|..+||+|+.
T Consensus       214 ~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~----d----~~s~~~~~~ll~~ay~~n~~nP~  271 (1018)
T KOG2002|consen  214 MSEKALLAFERALQLDPTCVSALVALGEVDLNFN----D----SDSYKKGVQLLQRAYKENNENPV  271 (1018)
T ss_pred             chhhHHHHHHHHHhcChhhHHHHHHHHHHHHHcc----c----hHHHHHHHHHHHHHHhhcCCCcH
Confidence            5678999999999999999999999998876532    1    26899999999999999999973

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.64  E-value=0.049  Score=43.27  Aligned_cols=69  Identities=22%  Similarity=0.285  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHHHhcCCCCh---HHHHHhHHHHHhcccCCCCh---HHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRH---DTLWCLGNAHTSHAFLTPDQ---DEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   72 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~---dA~~nLGnAy~~~g~l~pd~---~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe   72 (152)
                      .+++|+..|++.++..|++.   +|+|.+|.++..+.   ++.   ..-.....+|+..|++-++.-|+.+-..++.+
T Consensus        57 ~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~---~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~  131 (203)
T PF13525_consen   57 DYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI---PGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKK  131 (203)
T ss_dssp             -HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH---HHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC---ccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHH
Confidence            36899999999999999976   58999999987642   111   11235678999999999999999976555543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=95.54  E-value=0.067  Score=45.96  Aligned_cols=61  Identities=16%  Similarity=0.141  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV   73 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~   73 (152)
                      +++|-..|.+||++.|+.+.++.|||..|.-.           ++++.|..++.+|...-+.|..-+.+|.+
T Consensus       150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~-----------gd~~~A~~lll~a~l~~~ad~~v~~NLAl  210 (257)
T COG5010         150 FDEARRAYRQALELAPNEPSIANNLGMSLLLR-----------GDLEDAETLLLPAYLSPAADSRVRQNLAL  210 (257)
T ss_pred             hhHHHHHHHHHHHhccCCchhhhhHHHHHHHc-----------CCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            68899999999999999999999999999854           59999999999999999988876666643

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.51  E-value=0.072  Score=36.36  Aligned_cols=50  Identities=22%  Similarity=0.270  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHH-HHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGN-AHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP   62 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGn-Ay~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP   62 (152)
                      +++|+..+++++..+++........+. ++...           +++++|+.+|++++..+|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~a~~~~~~~~~~~~  161 (291)
T COG0457         111 YEEALELLEKALALDPDPDLAEALLALGALYEL-----------GDYEEALELYEKALELDP  161 (291)
T ss_pred             HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCC
Confidence            457788888888877777555555555 56554           488888888888888777

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=95.51  E-value=0.073  Score=40.19  Aligned_cols=62  Identities=21%  Similarity=0.162  Sum_probs=52.5

Q ss_pred             CHHHHHHHHHHHHhcCCC---ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 031846            1 MILDAISKLEEALMVSPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA   75 (152)
Q Consensus         1 mieeAIs~leeAL~idP~---~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~   75 (152)
                      .+++|+..|++++.-.|+   +......++.++...|           +.++|+..+-.++.  +.-+.|++++..+.
T Consensus        53 ~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g-----------r~~eAl~~~l~~la--~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   53 RYDEALALLEEALEEFPDDELNAALRVFLALALYNLG-----------RPKEALEWLLEALA--ETLPRYRRAIRFYA  117 (120)
T ss_pred             CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            378999999999998888   8888888899988765           99999999999987  44459999987654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.44  E-value=0.014  Score=32.82  Aligned_cols=19  Identities=37%  Similarity=0.469  Sum_probs=17.0

Q ss_pred             CHHHHHHHHHHHHhcCCCC
Q 031846            1 MILDAISKLEEALMVSPNR   19 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~   19 (152)
                      .+++|+..|+++|+++|++
T Consensus        16 ~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen   16 NYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             -HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHHHCcCC
Confidence            3789999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=95.38  E-value=0.046  Score=49.04  Aligned_cols=52  Identities=19%  Similarity=0.236  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      ++.|+..+++||+-||+...|-.-||.++..           +++|++|++.++++++.||+.
T Consensus       196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-----------~g~y~~AV~~~e~v~eQn~~y  247 (389)
T COG2956         196 VDRARELLKKALQADKKCVRASIILGRVELA-----------KGDYQKAVEALERVLEQNPEY  247 (389)
T ss_pred             HHHHHHHHHHHHhhCccceehhhhhhHHHHh-----------ccchHHHHHHHHHHHHhChHH
Confidence            4678999999999999999999999999885           459999999999999999986

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=95.34  E-value=0.046  Score=50.51  Aligned_cols=53  Identities=9%  Similarity=0.087  Sum_probs=49.8

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|++..++||+.+|...+.|...|.+|-..|           ++++|.++.+.|-.+|+.+
T Consensus       209 ~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G-----------~~~~Aa~~~~~Ar~LD~~D  261 (517)
T PF12569_consen  209 DYEKALEYIDKAIEHTPTLVELYMTKARILKHAG-----------DLKEAAEAMDEARELDLAD  261 (517)
T ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhCChhh
Confidence            3689999999999999999999999999998765           9999999999999999977

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.24  E-value=0.08  Score=42.51  Aligned_cols=61  Identities=13%  Similarity=0.080  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH-HHhc
Q 031846            5 AISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE-VAAK   76 (152)
Q Consensus         5 AIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe-~~~k   76 (152)
                      |+..|.+|+.+.|..-..|..||..+...           ++.=.|+-+|-|++-..--.+..+.+|. +.++
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~-----------~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQ-----------GDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHT-----------T-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccc-----------cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78999999999999999999999999874           4888899999999987766777777774 3455

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.15  E-value=0.049  Score=50.49  Aligned_cols=79  Identities=15%  Similarity=0.036  Sum_probs=68.2

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-------------HH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-------------LY   67 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne-------------~Y   67 (152)
                      |-|.|...+|++|+++|..-.|..-+...+..           ++.++.++...+++|...|+..             .|
T Consensus       419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~-----------Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~  487 (564)
T KOG1174|consen  419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQV-----------EGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEP  487 (564)
T ss_pred             hHHHHHHHHHhhhccCCccHHHHHHHHHHHHh-----------hCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhH
Confidence            34789999999999999999999999998876           4599999999999999999975             48


Q ss_pred             HHHHHHHhcCchhhHHHHHhhhc
Q 031846           68 QKSLEVAAKAPELHMEIHKHGLG   90 (152)
Q Consensus        68 rkaLe~~~kapel~~e~~~~~~~   90 (152)
                      +++++-+.+|.-+.++-++.+.|
T Consensus       488 Q~am~~y~~ALr~dP~~~~sl~G  510 (564)
T KOG1174|consen  488 QKAMEYYYKALRQDPKSKRTLRG  510 (564)
T ss_pred             HHHHHHHHHHHhcCccchHHHHH
Confidence            88888888888888887776543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.10  E-value=0.086  Score=43.32  Aligned_cols=68  Identities=13%  Similarity=0.135  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCCh------HHHHHhHHHHHHHHHHHHHcCCCcHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQ------DEAKEYFNKATLYFQQAVDEEPSNELYQKS   70 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~------~eA~~~~ekA~~~FqkAleldP~Ne~Yrka   70 (152)
                      .++++..|.+|++++|+...+|+.+|..+...-...+..      ....+....|+.||-+|+...++ ..|+..
T Consensus       274 ~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~-~~~~~~  347 (352)
T PF02259_consen  274 SDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK-YVRQDL  347 (352)
T ss_pred             HHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC-chHHHh
Confidence            578999999999999999999999999997652222211      13445777899999999999998 444433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.06  E-value=0.035  Score=51.21  Aligned_cols=60  Identities=17%  Similarity=0.183  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   72 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe   72 (152)
                      +-.|+..+.+|++++|....+|+.-|.+...+           +.|.+|+.-|++...+.|+....++.+.
T Consensus        54 ~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l-----------~~~~~A~~~l~~~~~l~Pnd~~~~r~~~  113 (476)
T KOG0376|consen   54 FGGALHDALKAIELDPTYIKAYVRRGTAVMAL-----------GEFKKALLDLEKVKKLAPNDPDATRKID  113 (476)
T ss_pred             hhhHHHHHHhhhhcCchhhheeeeccHHHHhH-----------HHHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence            45678888888888888888888888887753           5888888888888888888876666653

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.04  E-value=0.1  Score=47.27  Aligned_cols=65  Identities=22%  Similarity=0.206  Sum_probs=55.4

Q ss_pred             HHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchh
Q 031846            5 AISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL   80 (152)
Q Consensus         5 AIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel   80 (152)
                      =+...|+.++..|+++..+.-||..+.+.           +.|.||.++|+.|+...|+-+.|-..=..+++.-+.
T Consensus       313 l~k~~e~~l~~h~~~p~L~~tLG~L~~k~-----------~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~  377 (400)
T COG3071         313 LIKAAEKWLKQHPEDPLLLSTLGRLALKN-----------KLWGKASEALEAALKLRPSASDYAELADALDQLGEP  377 (400)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHh-----------hHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCh
Confidence            36678999999999999999999999985           499999999999999999998877766666655443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=94.92  E-value=0.068  Score=53.03  Aligned_cols=53  Identities=17%  Similarity=0.223  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHhcCCCC-hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNR-HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~-~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +|.|-..|.+++..||++ --+++-||..|...|           +++.|+.||++.++.+|+|.
T Consensus       323 ~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~-----------dle~s~~~fEkv~k~~p~~~  376 (1018)
T KOG2002|consen  323 FEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRG-----------DLEESKFCFEKVLKQLPNNY  376 (1018)
T ss_pred             HHHHHHHHHHHHccCCCCccccccchhHHHHHhc-----------hHHHHHHHHHHHHHhCcchH
Confidence            344444444444444444 334444444444332           44445555555555555443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.88  E-value=0.047  Score=47.21  Aligned_cols=52  Identities=17%  Similarity=0.312  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +-|.+.|.+||++.|+...-|+.+|.-..+-           ++++.|...|++.|++||++-
T Consensus        12 ~aaaely~qal~lap~w~~gwfR~g~~~eka-----------g~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976          12 EAAAELYNQALELAPEWAAGWFRLGEYTEKA-----------GEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             HHHHHHHHHHhhcCchhhhhhhhcchhhhhc-----------ccHHHHHHHHHHHHcCCcccc
Confidence            5678999999999999999999999876654           499999999999999999873

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=94.85  E-value=0.11  Score=44.94  Aligned_cols=75  Identities=15%  Similarity=0.093  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH--H--HHHHHHHhcC
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL--Y--QKSLEVAAKA   77 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~--Y--rkaLe~~~ka   77 (152)
                      |.+||++|-+||.+||..+.-|-|-...|.++           .+|+.+..--.+|++++|+--.  |  ...+-...+.
T Consensus        26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk~-----------~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   26 YDDAIDCYSRAICINPTVASYYTNRALCHLKL-----------KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             hchHHHHHHHHHhcCCCcchhhhhHHHHHHHh-----------hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence            67999999999999999988888888888864           5999999999999999996542  2  2334455777


Q ss_pred             chhhHHHHHh
Q 031846           78 PELHMEIHKH   87 (152)
Q Consensus        78 pel~~e~~~~   87 (152)
                      +|+=..|++.
T Consensus        95 ~eaI~~Lqra  104 (284)
T KOG4642|consen   95 DEAIKVLQRA  104 (284)
T ss_pred             cHHHHHHHHH
Confidence            8888888887

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.80  E-value=0.11  Score=44.16  Aligned_cols=76  Identities=18%  Similarity=0.124  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH----HhcC
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV----AAKA   77 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~----~~ka   77 (152)
                      +++|.-.|++..+.-+.....+..+++++..+|           +|++|.+.+++|++.+|+|+...-++-+    ..|.
T Consensus       183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~-----------~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG-----------HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT------------HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            578999999977777788888888899988765           9999999999999999999865555422    2444


Q ss_pred             chhhHHHHHhh
Q 031846           78 PELHMEIHKHG   88 (152)
Q Consensus        78 pel~~e~~~~~   88 (152)
                      .+-..+.-.++
T Consensus       252 ~~~~~~~l~qL  262 (290)
T PF04733_consen  252 TEAAERYLSQL  262 (290)
T ss_dssp             CHHHHHHHHHC
T ss_pred             hhHHHHHHHHH
Confidence            44444444444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=94.58  E-value=0.033  Score=33.06  Aligned_cols=19  Identities=21%  Similarity=0.443  Sum_probs=15.0

Q ss_pred             HHHHHHHcCCCcHHHHHHH
Q 031846           53 YFQQAVDEEPSNELYQKSL   71 (152)
Q Consensus        53 ~FqkAleldP~Ne~YrkaL   71 (152)
                      ||+|||++||+|......|
T Consensus         1 ~y~kAie~~P~n~~a~~nl   19 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNL   19 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHH
Confidence            6899999999997655544

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=94.12  E-value=0.073  Score=49.20  Aligned_cols=53  Identities=21%  Similarity=0.127  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      |+.||..|-+||++||+.+.-+-|...|+.+.           ++|-.|+.=+.+|++++|..-
T Consensus        20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~-----------e~~~~Al~Da~kaie~dP~~~   72 (476)
T KOG0376|consen   20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKV-----------ESFGGALHDALKAIELDPTYI   72 (476)
T ss_pred             HHHHHHHHHHHHhcCCcceeeechhhhhheee-----------chhhhHHHHHHhhhhcCchhh
Confidence            78999999999999999988888888898874           599999999999999999884

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=94.12  E-value=0.1  Score=50.49  Aligned_cols=52  Identities=12%  Similarity=0.103  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      ++.|+..|.+.+.++|++.++|.||.-+|..++           .-.+|..++++|++-|=+|
T Consensus       535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~-----------~k~ra~~~l~EAlKcn~~~  586 (777)
T KOG1128|consen  535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLK-----------KKKRAFRKLKEALKCNYQH  586 (777)
T ss_pred             hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHh-----------hhHHHHHHHHHHhhcCCCC
Confidence            578999999999999999999999999999864           7788999999999888655

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=93.98  E-value=0.25  Score=45.84  Aligned_cols=58  Identities=17%  Similarity=0.179  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKS   70 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yrka   70 (152)
                      +++|...|+..+..-|+++-.+=-.|.++..++           +.++|.+.|++|+.++|+...-+-+
T Consensus       322 ~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n-----------k~~~A~e~~~kal~l~P~~~~l~~~  379 (484)
T COG4783         322 YDEALKLLQPLIAAQPDNPYYLELAGDILLEAN-----------KAKEAIERLKKALALDPNSPLLQLN  379 (484)
T ss_pred             cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCCCccHHHHH
Confidence            578999999999999999877777788888754           9999999999999999998653333

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=93.92  E-value=0.11  Score=46.55  Aligned_cols=52  Identities=17%  Similarity=0.187  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      ++.|+...++|+++.|+.-++|+.|+.+|..+|           +||+|+.... ++=..|.++
T Consensus       250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~-----------d~e~ALlaLN-s~Pm~~~~~  301 (395)
T PF09295_consen  250 YELALEIAKKAVELSPSEFETWYQLAECYIQLG-----------DFENALLALN-SCPMLTYKD  301 (395)
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcC-----------CHHHHHHHHh-cCcCCCCcc
Confidence            689999999999999999999999999999865           9999996665 333334444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=93.87  E-value=0.088  Score=48.82  Aligned_cols=50  Identities=16%  Similarity=0.095  Sum_probs=44.1

Q ss_pred             CHHHHHHHHHHHHhc--------CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846            1 MILDAISKLEEALMV--------SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE   61 (152)
Q Consensus         1 mieeAIs~leeAL~i--------dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld   61 (152)
                      .+|.|+..|++||++        .|.-....-++|++|..++           +|++|+..|++||.+-
T Consensus       214 ~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~-----------k~~eAv~ly~~AL~i~  271 (508)
T KOG1840|consen  214 RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG-----------KYDEAVNLYEEALTIR  271 (508)
T ss_pred             cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHH
Confidence            379999999999999        7877778888999999764           9999999999999875

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.85  E-value=0.19  Score=45.26  Aligned_cols=56  Identities=29%  Similarity=0.272  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ   68 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yr   68 (152)
                      |+|||.++.--.+-+|++-.++--||-.|+..           .+|+.|.+||++--.+-|+.+.||
T Consensus        26 y~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~-----------Q~f~~AA~CYeQL~ql~P~~~qYr   81 (459)
T KOG4340|consen   26 YADAIQLLGSELERSPRSRAGLSLLGYCYYRL-----------QEFALAAECYEQLGQLHPELEQYR   81 (459)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhChHHHHHH
Confidence            78999999999999999999999999999863           599999999999999999988655

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=93.83  E-value=0.041  Score=50.20  Aligned_cols=33  Identities=18%  Similarity=0.237  Sum_probs=29.1

Q ss_pred             HHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846           23 LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus        23 ~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      +---||-|.++|           .|++|++||-++++++|.|+.
T Consensus       100 iKE~GN~yFKQg-----------Ky~EAIDCYs~~ia~~P~NpV  132 (536)
T KOG4648|consen  100 IKERGNTYFKQG-----------KYEEAIDCYSTAIAVYPHNPV  132 (536)
T ss_pred             HHHhhhhhhhcc-----------chhHHHHHhhhhhccCCCCcc
Confidence            456799999876           999999999999999999863

>PRK10941 hypothetical protein; Provisional

Probab=93.81  E-value=0.37  Score=41.14  Aligned_cols=55  Identities=15%  Similarity=0.051  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELY   67 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Y   67 (152)
                      ++.|..+.+..|.++|+++.-+--.|.+|..++           .+..|..-++.-|+..|+.+..
T Consensus       197 ~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~-----------c~~~A~~DL~~fl~~~P~dp~a  251 (269)
T PRK10941        197 MELALRASEALLQFDPEDPYEIRDRGLIYAQLD-----------CEHVALSDLSYFVEQCPEDPIS  251 (269)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CcHHHHHHHHHHHHhCCCchhH
Confidence            688999999999999999999999999999865           8999999999999999988754

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.73  E-value=0.28  Score=46.36  Aligned_cols=63  Identities=25%  Similarity=0.251  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc-------------cCCCChHHHH----------HhHHHHHHHHHHHHH
Q 031846            3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHA-------------FLTPDQDEAK----------EYFNKATLYFQQAVD   59 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g-------------~l~pd~~eA~----------~~~ekA~~~FqkAle   59 (152)
                      ..||+.|-++..+-|+++..+-.||..|-.-|             ..+|-..|-.          ...|+|+.||+||--
T Consensus       575 aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal  654 (840)
T KOG2003|consen  575 AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL  654 (840)
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            36888899999999999999999988876543             1223332222          267999999999999


Q ss_pred             cCCCcH
Q 031846           60 EEPSNE   65 (152)
Q Consensus        60 ldP~Ne   65 (152)
                      ++|+-.
T Consensus       655 iqp~~~  660 (840)
T KOG2003|consen  655 IQPNQS  660 (840)
T ss_pred             cCccHH
Confidence            999875

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=93.71  E-value=0.09  Score=45.57  Aligned_cols=48  Identities=19%  Similarity=0.167  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE   60 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel   60 (152)
                      ++-......+||+++|+...++|-||+.+..           ...|++|+.+.++|..+
T Consensus        60 ~~~v~~dcrralql~~N~vk~h~flg~~~l~-----------s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   60 WEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-----------SKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             hhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-----------hccccHHHHHHHHHHHH
Confidence            3456677899999999999999999999875           35899999999999654

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=93.17  E-value=0.56  Score=31.81  Aligned_cols=65  Identities=23%  Similarity=0.319  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----HHHHHHHHHhcC
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----LYQKSLEVAAKA   77 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----~YrkaLe~~~ka   77 (152)
                      +++|+....+|++.|-.                   -+..+|...|.+|++.|.+++..+|+..    .-++..+....+
T Consensus         5 ~~~A~~li~~Av~~d~~-------------------g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~ra   65 (77)
T smart00745        5 LSKAKELISKALKADEA-------------------GDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRA   65 (77)
T ss_pred             HHHHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence            46677777777655541                   1345677899999999999999998643    344555666666


Q ss_pred             chhhHHHH
Q 031846           78 PELHMEIH   85 (152)
Q Consensus        78 pel~~e~~   85 (152)
                      -++...+.
T Consensus        66 E~lk~~~~   73 (77)
T smart00745       66 EEIKKSLL   73 (77)
T ss_pred             HHHHHHHh
Confidence            66655554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=93.11  E-value=0.091  Score=48.94  Aligned_cols=50  Identities=22%  Similarity=0.218  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHhc----CCC--ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846            2 ILDAISKLEEALMV----SPN--RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP   62 (152)
Q Consensus         2 ieeAIs~leeAL~i----dP~--~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP   62 (152)
                      ++.||+.|.++|.+    --.  -+..-|.|||+|+-+           .+|++||+|++|=|.|--
T Consensus       251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll-----------~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLL-----------KEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence            68899999987744    333  344578899999953           599999999999777654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.00  E-value=0.49  Score=42.48  Aligned_cols=85  Identities=25%  Similarity=0.240  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHH-hcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---HHHHHHHHHhcC
Q 031846            2 ILDAISKLEEAL-MVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---LYQKSLEVAAKA   77 (152)
Q Consensus         2 ieeAIs~leeAL-~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---~YrkaLe~~~ka   77 (152)
                      .++|+..++.+| .-++.++|.+.-+|.+|-.. |+..... -.+.+++|+++|.||++++|+.-   .+--.|.+....
T Consensus       198 re~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~-~~~s~~~-d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~  275 (374)
T PF13281_consen  198 REKALQILLPVLESDENPDPDTLGLLGRIYKDL-FLESNFT-DRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHD  275 (374)
T ss_pred             HHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH-HHHcCcc-chHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCc
Confidence            478999999955 67778889999999999654 3321111 23459999999999999998642   344456666666


Q ss_pred             chhhHHHHHhh
Q 031846           78 PELHMEIHKHG   88 (152)
Q Consensus        78 pel~~e~~~~~   88 (152)
                      .+-..|+++-+
T Consensus       276 ~~~~~el~~i~  286 (374)
T PF13281_consen  276 FETSEELRKIG  286 (374)
T ss_pred             ccchHHHHHHH
Confidence            66666666544

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.95  E-value=0.021  Score=51.21  Aligned_cols=50  Identities=16%  Similarity=0.132  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .||..|..||+|||+.+.-|=--|.|...+           +++++|...|..|+++|=+-
T Consensus       166 ~airD~d~A~ein~Dsa~~ykfrg~A~rll-----------g~~e~aa~dl~~a~kld~dE  215 (377)
T KOG1308|consen  166 AAIRDCDFAIEINPDSAKGYKFRGYAERLL-----------GNWEEAAHDLALACKLDYDE  215 (377)
T ss_pred             hhhhhhhhhhccCcccccccchhhHHHHHh-----------hchHHHHHHHHHHHhccccH
Confidence            456666666666666666666666666654           48899999999988877544

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=92.70  E-value=0.13  Score=44.47  Aligned_cols=66  Identities=15%  Similarity=0.160  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHhc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSLEVAAK   76 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne-----~YrkaLe~~~k   76 (152)
                      ++.|.+.|+-.+++||.+.-|+-|.|.+++.-           ++|+-|.+-|.+=..-||+++     +|-.-.++.++
T Consensus       115 fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~-----------gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~  183 (297)
T COG4785         115 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYG-----------GRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPK  183 (297)
T ss_pred             chHHHHHhhhHhccCCcchHHHhccceeeeec-----------CchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHH
Confidence            67899999999999999999999999998864           499999999999999999987     46555555554


Q ss_pred             Cc
Q 031846           77 AP   78 (152)
Q Consensus        77 ap   78 (152)
                      .-
T Consensus       184 ~A  185 (297)
T COG4785         184 QA  185 (297)
T ss_pred             HH
Confidence            43

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.69  E-value=0.32  Score=29.67  Aligned_cols=33  Identities=18%  Similarity=0.263  Sum_probs=25.6

Q ss_pred             HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHH--HHHHcCCCc
Q 031846           21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQ--QAVDEEPSN   64 (152)
Q Consensus        21 dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~Fq--kAleldP~N   64 (152)
                      +.++-+|-.+...           +++++|++.|+  -+..++|+|
T Consensus         2 e~~y~~a~~~y~~-----------~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQK-----------GKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHT-----------T-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHhcccC
Confidence            5678888888765           49999999955  999999986

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.58  E-value=0.44  Score=41.41  Aligned_cols=78  Identities=22%  Similarity=0.242  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHhcCCCC------hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------
Q 031846            2 ILDAISKLEEALMVSPNR------HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~------~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------   65 (152)
                      .++|+.+|++|++|=-+-      +.-+.-||..|-+          -..++++|+.||++|-+-=-..+          
T Consensus        89 ~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs----------dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l  158 (288)
T KOG1586|consen   89 PEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES----------DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL  158 (288)
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh----------hHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence            367888888888653221      1113344444432          12477777888777766544433          


Q ss_pred             ---HHHHHHHHHhcCchhhHHHHHhhh
Q 031846           66 ---LYQKSLEVAAKAPELHMEIHKHGL   89 (152)
Q Consensus        66 ---~YrkaLe~~~kapel~~e~~~~~~   89 (152)
                         .|.--|+...+|...+.++.++-+
T Consensus       159 KvA~yaa~leqY~~Ai~iyeqva~~s~  185 (288)
T KOG1586|consen  159 KVAQYAAQLEQYSKAIDIYEQVARSSL  185 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               466678889999999998888765

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=92.03  E-value=0.58  Score=42.20  Aligned_cols=33  Identities=24%  Similarity=0.265  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHA   34 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g   34 (152)
                      -+.||..|.+.++.||.--+++.-|||.|.+.|
T Consensus        51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRG   83 (389)
T COG2956          51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRG   83 (389)
T ss_pred             cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcc
Confidence            368999999999999999999999999999987

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=91.83  E-value=0.12  Score=29.14  Aligned_cols=19  Identities=26%  Similarity=0.413  Sum_probs=16.3

Q ss_pred             CHHHHHHHHHHHHhcCCCC
Q 031846            1 MILDAISKLEEALMVSPNR   19 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~   19 (152)
                      .+++|+..|+++++++|++
T Consensus        16 ~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen   16 DYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             SHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHhhCCCC
Confidence            4789999999999999953

...

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=91.65  E-value=1.7  Score=37.27  Aligned_cols=60  Identities=13%  Similarity=0.197  Sum_probs=47.4

Q ss_pred             HHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCC-hHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            6 ISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPD-QDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         6 Is~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd-~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      ...|++.++-||.+-++|-.|-.-.-.+-....+ ..+...-.|+-+..|+|||+.||+++
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~   65 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSE   65 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCH
Confidence            4579999999999999999987766544222222 45566778999999999999999997

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.62  E-value=0.28  Score=44.22  Aligned_cols=53  Identities=15%  Similarity=0.031  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++||+.|-.||++||..+..|-..+.++.++.           ....|+.-+..|+++||+..
T Consensus       130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~-----------kp~~airD~d~A~ein~Dsa  182 (377)
T KOG1308|consen  130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLK-----------KPNAAIRDCDFAIEINPDSA  182 (377)
T ss_pred             hhhhhcccccccccCCchhhhcccccceeeecc-----------CCchhhhhhhhhhccCcccc
Confidence            689999999999999999999999999999864           88899999999999999874

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=91.54  E-value=0.77  Score=32.40  Aligned_cols=52  Identities=15%  Similarity=0.171  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHhc----CCC-----ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMV----SPN-----RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~i----dP~-----~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      |.+|++.+.+.+..    +..     ..-|+.+++.++..+|           ++++|+..+++||++--++
T Consensus        14 y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G-----------~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen   14 YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFG-----------HYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHH
Confidence            56676666666643    222     2467788888888765           9999999999999876544

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=91.42  E-value=1.1  Score=29.91  Aligned_cols=46  Identities=26%  Similarity=0.368  Sum_probs=35.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++.|+....+|++.|-..                   +..+|.+.|.+|+++|.+++..+|+.+
T Consensus         1 y~~~A~~~~~~Av~~D~~g-------------------~~~~A~~~Y~~ai~~l~~~~~~~~~~~   46 (69)
T PF04212_consen    1 YLDKAIELIKKAVEADEAG-------------------NYEEALELYKEAIEYLMQALKSESNPE   46 (69)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-------------------SHHHHHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             CHHHHHHHHHHHHHHHHCC-------------------CHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence            4788888888888776533                   235677799999999999999997443

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.25  E-value=1.4  Score=30.19  Aligned_cols=50  Identities=22%  Similarity=0.300  Sum_probs=35.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKS   70 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yrka   70 (152)
                      +++.|+..+.+|++.|-..                   +..+|...|.+|++.|.+++..+|+. ..+..
T Consensus         2 ~~~~A~~l~~~Av~~D~~g-------------------~y~eA~~~Y~~aie~l~~~~k~e~~~-~~k~~   51 (75)
T cd02678           2 FLQKAIELVKKAIEEDNAG-------------------NYEEALRLYQHALEYFMHALKYEKNP-KSKES   51 (75)
T ss_pred             hHHHHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHHHHHHHHHhhCCCH-HHHHH
Confidence            4677888888886554332                   23456778999999999999999954 33333

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.24  E-value=0.55  Score=41.25  Aligned_cols=52  Identities=17%  Similarity=0.200  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      |=|+++...+.|..+|.+-.|||..|.|+..           --+.++|..-|+++|+++|.=
T Consensus       246 ~yevleh~seiL~~~~~nvKA~frRakAhaa-----------~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAA-----------VWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-----------hcCHHHHHHHHHHHHhcChhh
Confidence            4578999999999999999999999999974           348999999999999999964

>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []

Probab=91.20  E-value=0.83  Score=26.28  Aligned_cols=36  Identities=14%  Similarity=0.226  Sum_probs=25.1

Q ss_pred             hHHHHHhH--HHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846           20 HDTLWCLG--NAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE   61 (152)
Q Consensus        20 ~dA~~nLG--nAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld   61 (152)
                      ++|.|+||  ..|.. |..     -...++++|+.+|++|-+.+
T Consensus         1 a~A~~~lg~~~~~~~-g~~-----g~~~d~~~A~~~~~~Aa~~g   38 (39)
T PF08238_consen    1 AEAQYNLGMYYMYYN-GKG-----GVPKDYEKAFKWYEKAAEQG   38 (39)
T ss_dssp             HHHHHHHHHHHHHHH-TST-----SSCHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHhhhh-ccC-----CccccccchHHHHHHHHHcc
Confidence            47899999  65543 220     01347999999999998764

Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.19  E-value=0.35  Score=30.05  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=24.9

Q ss_pred             hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846           20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE   61 (152)
Q Consensus        20 ~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld   61 (152)
                      +++|-.||.+-..           .++|++|++=|++||++.
T Consensus         1 Adv~~~Lgeisle-----------~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    1 ADVYDLLGEISLE-----------NENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             CcHHHHHHHHHHH-----------hccHHHHHHHHHHHHHHH
Confidence            3677888888764           479999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=91.05  E-value=0.78  Score=44.22  Aligned_cols=53  Identities=17%  Similarity=0.079  Sum_probs=40.8

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .|+|||.+|..||.++|++-..|..|......++           +|+-..+-=.+-|+++|.+
T Consensus        90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR-----------d~~~~~~tr~~LLql~~~~  142 (700)
T KOG1156|consen   90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR-----------DYEGYLETRNQLLQLRPSQ  142 (700)
T ss_pred             hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-----------hhhhHHHHHHHHHHhhhhh
Confidence            3799999999999999999999999998876543           5555555555555555554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=90.91  E-value=0.64  Score=42.13  Aligned_cols=52  Identities=21%  Similarity=0.284  Sum_probs=42.4

Q ss_pred             CHHHHHHHHHHHHhcCCC----ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846            1 MILDAISKLEEALMVSPN----RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS   63 (152)
Q Consensus         1 mieeAIs~leeAL~idP~----~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~   63 (152)
                      .+++||+.|++++....+    +|-.+|.||..+..+           .+|++|.+||.+.++++.-
T Consensus       282 ~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~-----------~~w~~A~~~f~~L~~~s~W  337 (468)
T PF10300_consen  282 NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ-----------HDWEEAAEYFLRLLKESKW  337 (468)
T ss_pred             CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH-----------chHHHHHHHHHHHHhcccc
Confidence            378999999999853332    567799999999875           4999999999999998764

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.75  E-value=1.3  Score=38.07  Aligned_cols=62  Identities=18%  Similarity=0.129  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHhcCCC---ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   74 (152)
Q Consensus         2 ieeAIs~leeAL~idP~---~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~   74 (152)
                      +++|...|..+++-.|+   -+|+++-||.....+           ++-|+|...|++.++.=|+.+..+.+.+..
T Consensus       194 y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l-----------~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~  258 (262)
T COG1729         194 YEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL-----------GNTDEACATLQQVIKRYPGTDAAKLAKVAL  258 (262)
T ss_pred             chHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            68999999999987666   458899999999875           499999999999999999999877766543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=90.55  E-value=0.58  Score=38.88  Aligned_cols=54  Identities=11%  Similarity=0.066  Sum_probs=38.1

Q ss_pred             CHHHHHHHHHHHHhcC---CCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVS---PNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~id---P~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|++|+++-   -..   .+.+-+++..+..+           ++|++|+++|++....--++.
T Consensus       130 d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l-----------~~y~~A~~~~e~~~~~~l~~~  189 (282)
T PF14938_consen  130 DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL-----------GRYEEAIEIYEEVAKKCLENN  189 (282)
T ss_dssp             -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-----------T-HHHHHHHHHHHHHTCCCHC
T ss_pred             CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHhhccc
Confidence            3689999999999762   222   23455667777765           499999999999998655543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=90.40  E-value=1.1  Score=32.95  Aligned_cols=46  Identities=17%  Similarity=0.207  Sum_probs=32.0

Q ss_pred             HHhHHHHHHHHHHHHHcCCCcH-HHHHHHHHH------hcCchhhHHHHHhhh
Q 031846           44 KEYFNKATLYFQQAVDEEPSNE-LYQKSLEVA------AKAPELHMEIHKHGL   89 (152)
Q Consensus        44 ~~~~ekA~~~FqkAleldP~Ne-~YrkaLe~~------~kapel~~e~~~~~~   89 (152)
                      .+++++|+...++++.+||-|| .|+..+.+.      ..|.+.|..+.+.+.
T Consensus        75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~  127 (146)
T PF03704_consen   75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR  127 (146)
T ss_dssp             TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            4599999999999999999987 566655554      344555666655554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=90.32  E-value=1.4  Score=37.86  Aligned_cols=60  Identities=20%  Similarity=0.199  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-----HHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSLE   72 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne-----~YrkaLe   72 (152)
                      +++|++.|+......|-.   ..+...|+-|+++-           +++++|+.++++=+.+.|.|+     .|-+.|.
T Consensus        50 ~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~-----------~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs  117 (254)
T COG4105          50 YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKN-----------GEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS  117 (254)
T ss_pred             HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhc-----------ccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence            689999999999887764   57899999999874           599999999999999999986     4666664

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.24  E-value=2.1  Score=28.99  Aligned_cols=46  Identities=22%  Similarity=0.328  Sum_probs=33.7

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++.|+....+|++.|-..                   +.++|...|.+|++.|.+++..+|+..
T Consensus         2 ~~~~a~~l~~~Av~~D~~g-------------------~~~~Al~~Y~~a~e~l~~~~~~~~~~~   47 (75)
T cd02656           2 LLQQAKELIKQAVKEDEDG-------------------NYEEALELYKEALDYLLQALKAEKEPK   47 (75)
T ss_pred             HHHHHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence            4567777777776655441                   235677899999999999999998643

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional

Probab=90.22  E-value=0.16  Score=47.94  Aligned_cols=35  Identities=46%  Similarity=0.598  Sum_probs=30.8

Q ss_pred             ccccccCCCchhhhhhHHHHHHHHHHHHHhhhcCC
Q 031846          109 TSKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSHM  143 (152)
Q Consensus       109 ~~~~k~~sd~~ydv~gw~il~~~iv~wv~~a~~~~  143 (152)
                      ..||||+||=+|-|.|=||-++.+|+++|||-.-+
T Consensus       501 ~~~~~~~~~n~ykiagg~~~gla~~~~~g~~y~f~  535 (576)
T PTZ00441        501 EDKKKKSSNNGYKIAGGVIAGLALVGCVGFAYNFV  535 (576)
T ss_pred             ccccCcCCCCCceeecchhhhHHHhhhhhhheeee
Confidence            45777889999999999999999999999998544

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=90.20  E-value=1.8  Score=32.91  Aligned_cols=62  Identities=18%  Similarity=0.209  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHhcCCCChHH---HHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            3 LDAISKLEEALMVSPNRHDT---LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA---~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      -.|....|+.+..++++..+   +.-=|.++..++..+-|.+--.-++--|++||.+++.+.|+-
T Consensus        13 iKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~   77 (111)
T PF04781_consen   13 IKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS   77 (111)
T ss_pred             HHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence            46889999999999998853   444499998887777666666668889999999999999976

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=90.15  E-value=0.57  Score=43.45  Aligned_cols=49  Identities=12%  Similarity=0.004  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE   61 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld   61 (152)
                      ++.|...+++.++++|++...|..|.|+|.+.|           ++++|.+.|++..+..
T Consensus       510 ~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G-----------~~~~A~~v~~~m~~~g  558 (697)
T PLN03081        510 LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG-----------RQAEAAKVVETLKRKG  558 (697)
T ss_pred             cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCC-----------CHHHHHHHHHHHHHcC
Confidence            578899999999999999999999999999865           9999999999877653

>smart00028 TPR Tetratricopeptide repeats

Probab=89.75  E-value=0.38  Score=24.15  Aligned_cols=19  Identities=32%  Similarity=0.378  Sum_probs=16.4

Q ss_pred             CHHHHHHHHHHHHhcCCCC
Q 031846            1 MILDAISKLEEALMVSPNR   19 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~   19 (152)
                      .+++|+..|+++++++|++
T Consensus        16 ~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028       16 DYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHccCCCC
Confidence            3689999999999999864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=89.65  E-value=1.5  Score=39.69  Aligned_cols=51  Identities=14%  Similarity=0.165  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      --||..+.+||.++|+|..|+|.=..++..           +++|++|+...+.-+.++-++
T Consensus       136 Rs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e-----------Le~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  136 RSALNDCSAALKLKPTHLKAYIRGAKCLLE-----------LERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             HHHHHHHHHHHhcCcchhhhhhhhhHHHHH-----------HHHHHHHHHHHhhhhhhhHHH
Confidence            356777777777777777777777777764           346666666665555554433

>smart00671 SEL1 Sel1-like repeats

Probab=89.39  E-value=0.76  Score=25.90  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=26.2

Q ss_pred             hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846           20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE   61 (152)
Q Consensus        20 ~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld   61 (152)
                      .+|.++||..|.. |.-      ...+.++|+.+|++|.+.+
T Consensus         1 ~~a~~~lg~~~~~-G~g------~~~d~~~A~~~~~~Aa~~g   35 (36)
T smart00671        1 AEAQYNLGQMYEY-GLG------VKKDLEKALEYYKKAAELG   35 (36)
T ss_pred             CHHHHHHHHHHHc-CCC------CCcCHHHHHHHHHHHHHcc
Confidence            3688999999863 321      2358999999999998764

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=89.13  E-value=1.4  Score=36.17  Aligned_cols=60  Identities=15%  Similarity=0.259  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHhcCCC------ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPN------RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV   73 (152)
Q Consensus         2 ieeAIs~leeAL~idP~------~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~   73 (152)
                      ++.|...|++|++-...      ....+|-+|..+..+|           ++++|+.+|.+.+..--.+. ..+.+++
T Consensus       141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg-----------~~~eA~~~fs~vi~~~~~s~-~~~l~~~  206 (214)
T PF09986_consen  141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLG-----------NYDEAKRWFSRVIGSKKASK-EPKLKDM  206 (214)
T ss_pred             HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHcCCCCCC-cHHHHHH
Confidence            57899999999965433      2467899999999876           99999999999987544333 3344433

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=88.58  E-value=2  Score=36.93  Aligned_cols=62  Identities=13%  Similarity=0.118  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChHH---HHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDT---LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA---~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+...++-+.+.|+|+++   +|-.|.++..   ..+|...=...-.+|+..|+.-|+-=|+.+
T Consensus        86 ~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~---~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105          86 EYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF---QIDDVTRDQSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             cHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc---cCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence            3789999999999999998775   7888999773   455555555677889999999999999886

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.53  E-value=2.7  Score=36.40  Aligned_cols=76  Identities=17%  Similarity=0.166  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchhh
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELH   81 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel~   81 (152)
                      ++.+++.+++-+.++|-+..+|..|=.+|...|    +...|...|+....++..-+-++|.-+.-+.-.+...+.+..+
T Consensus       169 ~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g----~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~~~~~~~~~  244 (280)
T COG3629         169 ADAVIEHLERLIELDPYDEPAYLRLMEAYLVNG----RQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEILRQDPLDN  244 (280)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC----CchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhccccccc
Confidence            578899999999999999999999999998766    5567777777777777777778887664333333344444433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=88.46  E-value=0.58  Score=43.78  Aligned_cols=48  Identities=21%  Similarity=0.336  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHhcCCC------ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846            2 ILDAISKLEEALMVSPN------RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE   60 (152)
Q Consensus         2 ieeAIs~leeAL~idP~------~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel   60 (152)
                      ++.||+.+++-|.|.-+      -..|+|.|||+|..+           +..++|+.+-++++++
T Consensus       291 ~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al-----------g~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  291 VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL-----------GEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-----------hhHHHHHHHHHHHHHH
Confidence            68899999998877654      456899999999965           4999999999988765

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=88.14  E-value=1.4  Score=40.86  Aligned_cols=60  Identities=15%  Similarity=0.107  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH--cCCCcHHHHHHHHHHh
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD--EEPSNELYQKSLEVAA   75 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle--ldP~Ne~YrkaLe~~~   75 (152)
                      +++|...|++..+  | +..+|..|..+|.+.|           +.++|++.|++.++  +.|+...|.-.+....
T Consensus       376 ~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G-----------~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~  437 (697)
T PLN03081        376 MEDARNVFDRMPR--K-NLISWNALIAGYGNHG-----------RGTKAVEMFERMIAEGVAPNHVTFLAVLSACR  437 (697)
T ss_pred             HHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence            5777777777654  2 3456777777777654           78888888888766  6777777776665443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=88.13  E-value=0.74  Score=43.71  Aligned_cols=53  Identities=21%  Similarity=0.093  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHh---------cCC---------CChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846            2 ILDAISKLEEALM---------VSP---------NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS   63 (152)
Q Consensus         2 ieeAIs~leeAL~---------idP---------~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~   63 (152)
                      |+-++-.|.+||+         +.|         +.-+.+||+|.+|...|           +.-.|.+||++|+..--.
T Consensus       299 y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~g-----------rPl~AfqCf~~av~vfh~  367 (696)
T KOG2471|consen  299 YQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSG-----------RPLLAFQCFQKAVHVFHR  367 (696)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcC-----------CcHHHHHHHHHHHHHHhc
Confidence            4567778888885         122         35688999999999755           999999999999998777


Q ss_pred             cH
Q 031846           64 NE   65 (152)
Q Consensus        64 Ne   65 (152)
                      |+
T Consensus       368 nP  369 (696)
T KOG2471|consen  368 NP  369 (696)
T ss_pred             Cc
Confidence            76

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=87.90  E-value=4.4  Score=32.83  Aligned_cols=66  Identities=21%  Similarity=0.240  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHhcCCCCh----HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHH-----HHHHHHcCCCcHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRH----DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLY-----FQQAVDEEPSNELYQKSL   71 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~----dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~-----FqkAleldP~Ne~YrkaL   71 (152)
                      .++|...+++||++.-...    .+|...|..|..+|    +.+.|..+|+.|.+.     =.+-|++||--.+.-+.|
T Consensus        93 ~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g----~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~ML  167 (175)
T KOG4555|consen   93 DEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG----NDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQML  167 (175)
T ss_pred             hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC----chHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHH
Confidence            4789999999999876644    46888999999876    456677777777653     356778888665555554

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.57  E-value=0.91  Score=32.15  Aligned_cols=16  Identities=19%  Similarity=0.192  Sum_probs=10.2

Q ss_pred             HhHHHHHHHHHHHHHc
Q 031846           45 EYFNKATLYFQQAVDE   60 (152)
Q Consensus        45 ~~~ekA~~~FqkAlel   60 (152)
                      ++|++|+++|..||+.
T Consensus        20 gny~eA~~lY~~ale~   35 (75)
T cd02680          20 GNAEEAIELYTEAVEL   35 (75)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            4666666666666653

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PLN03218 maturation of RBCL 1; Provisional

Probab=87.37  E-value=4.6  Score=40.64  Aligned_cols=63  Identities=10%  Similarity=0.103  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHhcC-CCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc--CCCcHHHHHHHHHHh
Q 031846            2 ILDAISKLEEALMVS-PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE--EPSNELYQKSLEVAA   75 (152)
Q Consensus         2 ieeAIs~leeAL~id-P~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel--dP~Ne~YrkaLe~~~   75 (152)
                      +++|+..|++..+.+ +.+...|..|-.+|.+.|           ++++|++.|++..+.  .|+...|...++.+.
T Consensus       595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G-----------~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~  660 (1060)
T PLN03218        595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG-----------DWDFALSIYDDMKKKGVKPDEVFFSALVDVAG  660 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            455555555555544 223344445555555433           666777777666655  566556666555443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=87.21  E-value=0.88  Score=43.57  Aligned_cols=65  Identities=14%  Similarity=0.057  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCch
Q 031846            4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPE   79 (152)
Q Consensus         4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kape   79 (152)
                      .|+..+..||++||..-.|||.|..++..+           .++.+|++|-.-+....|.+..-...+++.++.+.
T Consensus       429 ~AlrDch~Alrln~s~~kah~~la~aL~el-----------~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~  493 (758)
T KOG1310|consen  429 LALRDCHVALRLNPSIQKAHFRLARALNEL-----------TRYLEALSCHWALQMSFPTDVARQNFVLCLPRDIS  493 (758)
T ss_pred             HHHHhHHhhccCChHHHHHHHHHHHHHHHH-----------hhHHHhhhhHHHHhhcCchhhhhhhhhhccccchH
Confidence            578888999999999999999999999875           48999999999999999977766666666655543

>PLN03077 Protein ECB2; Provisional

Probab=86.74  E-value=2.6  Score=40.04  Aligned_cols=55  Identities=15%  Similarity=0.097  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH--cCCCcHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD--EEPSNELYQKSL   71 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle--ldP~Ne~YrkaL   71 (152)
                      +++|...|++.    +.+..+|..|-.+|..+|           +.++|++.|++.++  +.|+...|--.|
T Consensus       540 ~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G-----------~~~~A~~lf~~M~~~g~~Pd~~T~~~ll  596 (857)
T PLN03077        540 MNYAWNQFNSH----EKDVVSWNILLTGYVAHG-----------KGSMAVELFNRMVESGVNPDEVTFISLL  596 (857)
T ss_pred             HHHHHHHHHhc----CCChhhHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence            45666666654    344556666666666654           66666666666555  456555544444

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=86.71  E-value=0.9  Score=25.13  Aligned_cols=25  Identities=12%  Similarity=0.090  Sum_probs=20.4

Q ss_pred             HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHH
Q 031846           21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQ   56 (152)
Q Consensus        21 dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~Fqk   56 (152)
                      .++++||.+|..+|           ++++|...+++
T Consensus         2 ~a~~~la~~~~~~G-----------~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQG-----------DPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcC-----------CHHHHHHHHhC
Confidence            57899999999866           88888887653

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.48  E-value=4.5  Score=28.30  Aligned_cols=45  Identities=16%  Similarity=0.135  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+.|+..+.+|++.|-.-                   +-.+|...|.+|+++|.+++..+|+..
T Consensus         3 ~~~a~~l~~~Ave~D~~g-------------------~y~eAl~~Y~~aie~l~~~lk~e~d~~   47 (77)
T cd02683           3 ELAAKEVLKRAVELDQEG-------------------RFQEALVCYQEGIDLLMQVLKGTKDEA   47 (77)
T ss_pred             hHHHHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHhhCCCHH
Confidence            456777777776655332                   224567789999999999999999654

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.21  E-value=1.1  Score=31.95  Aligned_cols=36  Identities=17%  Similarity=0.271  Sum_probs=26.3

Q ss_pred             HHhHHHHHHHHHHHHHcCCCc------HHHHHHHHHHhcCch
Q 031846           44 KEYFNKATLYFQQAVDEEPSN------ELYQKSLEVAAKAPE   79 (152)
Q Consensus        44 ~~~~ekA~~~FqkAleldP~N------e~YrkaLe~~~kape   79 (152)
                      ++.|++|.++..+||..|-..      ..|++++++..++..
T Consensus         2 k~~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a   43 (79)
T cd02679           2 RGYYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIA   43 (79)
T ss_pred             chHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            358889999999999888753      257777776665543

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.12  E-value=3.8  Score=29.06  Aligned_cols=45  Identities=18%  Similarity=0.137  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      +.|+....+|++.|-..                   +..+|.-+|.+|++.+.+++...||+..
T Consensus         4 ~~A~~~a~~AVe~D~~g-------------------r~~eAi~~Y~~aIe~L~q~~~~~pD~~~   48 (75)
T cd02682           4 EMARKYAINAVKAEKEG-------------------NAEDAITNYKKAIEVLSQIVKNYPDSPT   48 (75)
T ss_pred             HHHHHHHHHHHHHHhcC-------------------CHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence            56777888888766543                   1234556899999999999999998863

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.40  E-value=6.1  Score=27.85  Aligned_cols=40  Identities=20%  Similarity=0.110  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846            3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE   61 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld   61 (152)
                      +.||+...+|++.|-..                   +-.+|...|.+|+++|..++..+
T Consensus         4 ~~Ai~~a~~Ave~D~~g-------------------~y~eA~~~Y~~aie~l~~~~~~~   43 (76)
T cd02681           4 RDAVQFARLAVQRDQEG-------------------RYSEAVFYYKEAAQLLIYAEMAG   43 (76)
T ss_pred             HHHHHHHHHHHHHHHcc-------------------CHHHHHHHHHHHHHHHHHHHHhc
Confidence            46777777777766443                   11345567888888888886555

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PLN03218 maturation of RBCL 1; Provisional

Probab=84.72  E-value=5.9  Score=39.89  Aligned_cols=78  Identities=14%  Similarity=0.135  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHh--cCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH--cCCCcHHHHHHHHHHhcC
Q 031846            2 ILDAISKLEEALM--VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD--EEPSNELYQKSLEVAAKA   77 (152)
Q Consensus         2 ieeAIs~leeAL~--idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle--ldP~Ne~YrkaLe~~~ka   77 (152)
                      +++|+..|++..+  +.|+- ..|..|-.+|.+.           +++++|++.|++..+  +.|+...|...+....+.
T Consensus       700 ~eeA~~lf~eM~~~g~~Pdv-vtyN~LI~gy~k~-----------G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~  767 (1060)
T PLN03218        700 WKKALELYEDIKSIKLRPTV-STMNALITALCEG-----------NQLPKALEVLSEMKRLGLCPNTITYSILLVASERK  767 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence            3455555555433  23332 3455555555443           367777777776544  457777777777666442


Q ss_pred             --chhhHHHHHhhhcc
Q 031846           78 --PELHMEIHKHGLGQ   91 (152)
Q Consensus        78 --pel~~e~~~~~~~q   91 (152)
                        .+.=.++++++...
T Consensus       768 G~le~A~~l~~~M~k~  783 (1060)
T PLN03218        768 DDADVGLDLLSQAKED  783 (1060)
T ss_pred             CCHHHHHHHHHHHHHc
Confidence              33333444444433

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=84.71  E-value=0.69  Score=41.70  Aligned_cols=59  Identities=19%  Similarity=0.229  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846            4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV   73 (152)
Q Consensus         4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~   73 (152)
                      .|+..-..+|+.+++...|||..|.++..+           .++++|.+-++.|...+|++..-.+.++-
T Consensus       293 ~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~-----------~~~~~a~~~~~~a~~~~p~d~~i~~~~~~  351 (372)
T KOG0546|consen  293 GARFRTNEALRDERSKTKAHYRRGQAYKLL-----------KNYDEALEDLKKAKQKAPNDKAIEEELEN  351 (372)
T ss_pred             cceeccccccccChhhCcHHHHHHhHHHhh-----------hchhhhHHHHHHhhccCcchHHHHHHHHH
Confidence            344455677889999999999999999863           59999999999999999999766655543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=84.44  E-value=3.2  Score=34.75  Aligned_cols=55  Identities=20%  Similarity=0.219  Sum_probs=27.7

Q ss_pred             HHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----HHHHH
Q 031846            5 AISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----LYQKS   70 (152)
Q Consensus         5 AIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----~Yrka   70 (152)
                      |...||++|+.-|++.+.+.+--.-+..+           ++.+.|-..|++|+..-|.+.    +|.+=
T Consensus        55 A~~Ife~glk~f~~~~~~~~~Y~~~l~~~-----------~d~~~aR~lfer~i~~l~~~~~~~~iw~~~  113 (280)
T PF05843_consen   55 ARKIFERGLKKFPSDPDFWLEYLDFLIKL-----------NDINNARALFERAISSLPKEKQSKKIWKKF  113 (280)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHT-----------T-HHHHHHHHHHHCCTSSCHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            55555555555555544443333333322           356666666666666666555    55543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=84.42  E-value=1.9  Score=42.28  Aligned_cols=73  Identities=23%  Similarity=0.321  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccC-----------------------CCChHHHHHhHHHHHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFL-----------------------TPDQDEAKEYFNKATLYFQQAV   58 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l-----------------------~pd~~eA~~~~ekA~~~FqkAl   58 (152)
                      ++||+..||++|+.-|+.|..|--||.++-+++-+                       ..+.+|-.++.-+|-..+++|.
T Consensus       667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar  746 (913)
T KOG0495|consen  667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR  746 (913)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            68999999999999999999999999998765311                       0011222235666777777777


Q ss_pred             HcCCCcH-HHHHHHHHH
Q 031846           59 DEEPSNE-LYQKSLEVA   74 (152)
Q Consensus        59 eldP~Ne-~YrkaLe~~   74 (152)
                      --||+|. +|..++.|-
T Consensus       747 lkNPk~~~lwle~Ir~E  763 (913)
T KOG0495|consen  747 LKNPKNALLWLESIRME  763 (913)
T ss_pred             hcCCCcchhHHHHHHHH
Confidence            7777775 455555443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=84.34  E-value=1.8  Score=40.67  Aligned_cols=53  Identities=15%  Similarity=0.007  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHhcC------CCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVS------PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~id------P~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|++++.+.      .....++..+|.+|...|           +.++|..++.+|+++-....
T Consensus       707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G-----------~~~~A~~~L~~Al~la~~~g  765 (903)
T PRK04841        707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG-----------RKSEAQRVLLEALKLANRTG  765 (903)
T ss_pred             HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHhCccc
Confidence            578999999999863      233457888999998765           89999999999999887654

>PLN03077 Protein ECB2; Provisional

Probab=83.44  E-value=3.1  Score=39.55  Aligned_cols=48  Identities=8%  Similarity=0.022  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE   60 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel   60 (152)
                      ++.|....+++++++|++...|..|+|+|...|           ++++|.+..+.--+.
T Consensus       673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g-----------~~~~a~~vr~~M~~~  720 (857)
T PLN03077        673 VELGELAAQHIFELDPNSVGYYILLCNLYADAG-----------KWDEVARVRKTMREN  720 (857)
T ss_pred             hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC-----------ChHHHHHHHHHHHHc
Confidence            456777888999999999999999999999765           899999999877543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.37  E-value=3.2  Score=37.66  Aligned_cols=48  Identities=23%  Similarity=0.212  Sum_probs=41.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD   59 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle   59 (152)
                      .+|+|+.+|+.|++..--.+-.-||+..++.+.           ++++.|+++.-..++
T Consensus       159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy~~-----------~qyasALk~iSEIie  206 (459)
T KOG4340|consen  159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHYSS-----------RQYASALKHISEIIE  206 (459)
T ss_pred             cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhh-----------hhHHHHHHHHHHHHH
Confidence            479999999999999998999999999999875           488999887665554

>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes

Probab=83.36  E-value=4.3  Score=36.14  Aligned_cols=62  Identities=21%  Similarity=0.241  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHhc--CCC---------------ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            3 LDAISKLEEALMV--SPN---------------RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         3 eeAIs~leeAL~i--dP~---------------~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      ..||..|+.-|..  +|+               .-.|++++|..|.+  ++++|..+-.++..+++++|++.++.--.|+
T Consensus       266 ~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K--~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~  343 (371)
T PF12309_consen  266 SKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSK--LITSDPKEQLENLEKSLEYYKWVVDYCEKHP  343 (371)
T ss_pred             HHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHcc--ccCCChHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            4678888887764  444               12589999999987  5789999999999999999999998655554


Q ss_pred             H
Q 031846           66 L   66 (152)
Q Consensus        66 ~   66 (152)
                      .
T Consensus       344 ~  344 (371)
T PF12309_consen  344 E  344 (371)
T ss_pred             h
Confidence            4

Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=83.03  E-value=2.7  Score=39.60  Aligned_cols=92  Identities=18%  Similarity=0.190  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHhcCCC--ChHHHHHhHHHHHhcccCCCChHHHHHhHHH------HHHHHHHHHHc--------CCCc-
Q 031846            2 ILDAISKLEEALMVSPN--RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNK------ATLYFQQAVDE--------EPSN-   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~--~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ek------A~~~FqkAlel--------dP~N-   64 (152)
                      .+|||..|.+.++.+|.  +-..++||-++|..++.. -|...-...||+      |.-||-+||-.        .|+. 
T Consensus       275 ~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y-ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a  353 (539)
T PF04184_consen  275 LREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY-ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAA  353 (539)
T ss_pred             hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH-HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhh
Confidence            57999999999998886  445899999999876532 222223345664      77777777722        1221 


Q ss_pred             ------HHHHHHHHHHhcCchhhHHHHHhhhccCCC
Q 031846           65 ------ELYQKSLEVAAKAPELHMEIHKHGLGQQTM   94 (152)
Q Consensus        65 ------e~YrkaLe~~~kapel~~e~~~~~~~q~~~   94 (152)
                            ..-..++|...+|.|.++.+-+-++++-.+
T Consensus       354 ~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~L  389 (539)
T PF04184_consen  354 SRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSL  389 (539)
T ss_pred             hhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCC
Confidence                  122345566677777777777767666553

The molecular function of this protein is uncertain.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=82.98  E-value=1.5  Score=41.32  Aligned_cols=54  Identities=22%  Similarity=0.242  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846            3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP   62 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP   62 (152)
                      +.-|..-.+||++||+.++||..|+.-...      ...|++..|.+|+++=+..+..+.
T Consensus       185 ~aRIkaA~eALei~pdCAdAYILLAEEeA~------Ti~Eae~l~rqAvkAgE~~lg~s~  238 (539)
T PF04184_consen  185 QARIKAAKEALEINPDCADAYILLAEEEAS------TIVEAEELLRQAVKAGEASLGKSQ  238 (539)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHhhccccccc------CHHHHHHHHHHHHHHHHHhhchhh
Confidence            456778899999999999999999875432      235666667777766666665543

The molecular function of this protein is uncertain.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=81.37  E-value=5.8  Score=37.61  Aligned_cols=54  Identities=13%  Similarity=0.080  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      -+--..|.++|.++|++++.|.--..=....          +.+++.|...|.++|..+|+++.
T Consensus       122 ~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~----------n~ni~saRalflrgLR~npdsp~  175 (568)
T KOG2396|consen  122 GEVKKIFAAMLAKHPNNPDLWIYAAKWEFEI----------NLNIESARALFLRGLRFNPDSPK  175 (568)
T ss_pred             hHHHHHHHHHHHhCCCCchhHHhhhhhHHhh----------ccchHHHHHHHHHHhhcCCCChH
Confidence            3445679999999999999886554444433          24699999999999999999984

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.29  E-value=9.3  Score=33.68  Aligned_cols=33  Identities=30%  Similarity=0.086  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHA   34 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g   34 (152)
                      |+||.+.+++||.-++++++++-||=..-..+|
T Consensus       223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~G  255 (299)
T KOG3081|consen  223 YEEAESLLEEALDKDAKDPETLANLIVLALHLG  255 (299)
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence            566666677777666666666666665555555

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=81.00  E-value=3.5  Score=35.16  Aligned_cols=44  Identities=23%  Similarity=0.355  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH
Q 031846            4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD   59 (152)
Q Consensus         4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle   59 (152)
                      .+.....+.+++.|.. .-.+.|||+++.+|           ++.||...|++|+.
T Consensus        74 R~~Rea~~~~~~ApTv-qnr~rLa~al~elG-----------r~~EA~~hy~qals  117 (251)
T COG4700          74 RHLREATEELAIAPTV-QNRYRLANALAELG-----------RYHEAVPHYQQALS  117 (251)
T ss_pred             HHHHHHHHHHhhchhH-HHHHHHHHHHHHhh-----------hhhhhHHHHHHHhc
Confidence            3445566677777876 44789999999865           88888888888875

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=80.54  E-value=8.7  Score=35.36  Aligned_cols=67  Identities=18%  Similarity=0.261  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---HHHHHH-HHHhcC
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---LYQKSL-EVAAKA   77 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---~YrkaL-e~~~ka   77 (152)
                      +++-+...+.+|++||+.--+|+..--++.+.+.         -++.+=+...+++|++||.|-   .||+-+ +++..+
T Consensus        91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~---------~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~  161 (421)
T KOG0529|consen   91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH---------SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS  161 (421)
T ss_pred             hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC---------chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence            3556778899999999999999999999987653         278889999999999999885   577765 555555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	152
1zu2_A	158	Solution Nmr Structure Of The Plant Tom20 Mitochond		2e-27

>pdb|1ZU2|A Chain A, Solution Nmr Structure Of The Plant Tom20 Mitochondrial Import Receptor From Arabidopsis Thaliana Length = 158

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 70/90 (77%)
Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           MI +AI+K EEAL++ P + + +WC+GNA+TS AFLTPD+ EAK  F+ AT +FQQAVDE
Sbjct: 61  MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120
Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLG 90
           +P N  Y KSLE+ AKAP+LH E +K GLG
Sbjct: 121 QPDNTHYLKSLEMTAKAPQLHAEAYKQGLG 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	152
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	1e-39
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	9e-04

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score =  130 bits (327), Expect = 1e-39
 Identities = 54/92 (58%), Positives = 70/92 (76%)

Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           MI +AI+K EEAL++ P + + +WC+GNA+TS AFLTPD+ EAK  F+ AT +FQQAVDE
Sbjct: 61  MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120

Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQ 92
           +P N  Y KSLE+ AKAP+LH E +K GLG  
Sbjct: 121 QPDNTHYLKSLEMTAKAPQLHAEAYKQGLGGS 152

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 17/91 (18%), Positives = 22/91 (24%), Gaps = 15/91 (16%)

Query: 4   DAISKLEEALMVSPNRHDTLWCLGNAHTS--------HAF-----LTPDQDEAKEYFNKA 50
            A    +E L  +PN  D L                   +     L  D   A       
Sbjct: 72  KAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA--NIFLG 129

Query: 51  TLYFQQAVDEEPSNELYQKSLEVAAKAPELH 81
             Y+  A  E+   E   K L    K     
Sbjct: 130 NYYYLTAEQEKKKLETDYKKLSSPTKMQYAR 160

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 18/97 (18%)

Query: 4   DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKA------------- 50
           +AI  L +A+ ++P+       L            ++ E ++   +A             
Sbjct: 193 NAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRS 252

Query: 51  ---TLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEI 84
                  +   D+  + EL +K+LE       LH +I
Sbjct: 253 AAKFYRRKDEPDK--AIELLKKALEYIPNNAYLHCQI 287

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 37.6 bits (87), Expect = 9e-04
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 8/69 (11%)

Query: 4   DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTP--------DQDEAKEYFNKATLYFQ 55
            AI  L++AL   PN       +G  + +  F            + +  E    A  + +
Sbjct: 265 KAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLK 324

Query: 56  QAVDEEPSN 64
           +A +   + 
Sbjct: 325 KADEANDNL 333

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	152
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.94
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.47
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.44
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.4
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.33
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.33
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.32
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.31
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.3
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.3
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.28
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.27
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.27
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.27
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.26
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.25
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.21
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.2
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.2
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.18
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.18
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.17
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.17
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.17
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.16
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.16
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.16
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.16
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.15
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.15
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.15
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.15
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.14
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.11
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.09
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.07
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.06
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.03
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.03
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.03
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.02
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.02
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.01
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.0
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.0
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.0
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.0
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.99
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.98
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.97
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.97
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.96
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.96
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.95
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.93
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.93
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.93
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.92
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.91
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.91
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.91
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.9
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.9
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.88
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.88
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.88
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.87
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.87
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.86
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.86
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.86
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.85
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.85
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.84
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.83
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.83
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.82
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.81
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.81
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.8
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.79
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.79
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.78
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.78
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.78
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.77
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.76
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.75
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.74
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.74
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.74
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.74
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.74
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.73
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.73
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.72
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.72
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.71
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.71
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.7
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.7
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.7
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.69
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.68
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.68
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.68
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.68
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.67
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.67
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.66
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.65
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.65
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.64
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.64
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.63
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.63
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.63
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.63
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.62
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.62
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.61
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.61
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.6
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.58
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.58
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.57
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.56
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.56
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.55
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.53
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.52
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.46
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.45
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.44
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.39
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.32
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.28
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.27
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.19
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.18
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.16
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.15
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.14
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.13
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.12
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.11
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.08
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.08
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.08
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.08
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.06
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.03
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.99
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.99
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.95
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.95
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.92
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.9
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.9
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.89
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.89
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.87
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.86
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.85
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.85
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.82
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.82
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.81
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.81
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.8
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.79
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.78
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.76
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.76
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.75
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.69
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.62
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.59
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.58
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.56
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.53
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.53
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.53
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.46
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.45
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.44
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.44
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.37
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.34
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.34
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.17
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.1
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.09
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.09
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.86
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	96.82
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	96.57
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	96.12
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.03
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	95.19
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.17
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.13
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.09
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.93
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	94.43
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	93.93
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.72
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	93.67
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	93.13
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	92.97
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	92.84
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.74
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	91.86
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	89.33
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	89.23
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	88.88
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	88.54
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	84.09
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	83.57

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.94  E-value=7.4e-27  Score=182.33  Aligned_cols=89  Identities=60%  Similarity=0.966  Sum_probs=86.8

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchh
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL   80 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel   80 (152)
                      |+++||+.|++||+|||++++||||||+||+++|+++|+..++.++|++|++||+|||++||+|+.|++++++++|+||+
T Consensus        61 ~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~el  140 (158)
T 1zu2_A           61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQL  140 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHhc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhh
Q 031846           81 HMEIHKHGL   89 (152)
Q Consensus        81 ~~e~~~~~~   89 (152)
                      |.++|++++
T Consensus       141 ~~~~~~~~~  149 (158)
T 1zu2_A          141 HAEAYKQGL  149 (158)
T ss_dssp             HHHHHHSSS
T ss_pred             cCccccccc
Confidence            999999965

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.47  E-value=2.5e-13  Score=96.79  Aligned_cols=75  Identities=15%  Similarity=0.102  Sum_probs=63.7

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------   65 (152)
                      .+++|+..|++||+++|++.++|+++|.+|..+|           ++++|+++|++||+++|++.               
T Consensus        28 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~   96 (126)
T 4gco_A           28 DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM-----------EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMRE   96 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhc-----------cHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCC
Confidence            3789999999999999999999999999999765           99999999999999999985               


Q ss_pred             ------HHHHHHHHHhcCchhhHHHHH
Q 031846           66 ------LYQKSLEVAAKAPELHMEIHK   86 (152)
Q Consensus        66 ------~YrkaLe~~~kapel~~e~~~   86 (152)
                            .|++++++.+..++.+..|.+
T Consensus        97 ~~~A~~~~~~al~l~P~~~~a~~~l~~  123 (126)
T 4gco_A           97 WSKAQRAYEDALQVDPSNEEAREGVRN  123 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence                  477777777777777766654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.44  E-value=6.6e-13  Score=96.42  Aligned_cols=78  Identities=12%  Similarity=0.063  Sum_probs=65.4

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------   65 (152)
                      .+++|+..|+++|+++|++.++|++||.+|..+|           ++++|+.+|++|++++|+|.               
T Consensus        46 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  114 (150)
T 4ga2_A           46 EYDLAKKYICTYINVQERDPKAHRFLGLLYELEE-----------NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV  114 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999999765           99999999999999999985               


Q ss_pred             ------HH-HHHHHHHhcCchhhHHHHHhhh
Q 031846           66 ------LY-QKSLEVAAKAPELHMEIHKHGL   89 (152)
Q Consensus        66 ------~Y-rkaLe~~~kapel~~e~~~~~~   89 (152)
                            .| ++++++.+..|+++.-..+-+.
T Consensus       115 ~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~  145 (150)
T 4ga2_A          115 TDGRAKYWVERAAKLFPGSPAVYKLKEQLLD  145 (150)
T ss_dssp             SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence                  23 6778888888877654444333

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.40  E-value=1.1e-12  Score=93.42  Aligned_cols=63  Identities=13%  Similarity=0.149  Sum_probs=58.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   74 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~   74 (152)
                      .+++|+..|++||++||++.++|++||.+|..+|           ++++|+++|++||+++|+|...+..|..+
T Consensus        62 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~-----------~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR-----------EWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            4789999999999999999999999999999865           99999999999999999999988887643

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.33  E-value=1.6e-12  Score=101.16  Aligned_cols=81  Identities=15%  Similarity=0.177  Sum_probs=66.7

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------   65 (152)
                      ++++|+..|++|+++||+++++|+|+|+++..++.+ ..-.+|++.+++|+.+|++||++||++.               
T Consensus        17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~-~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~   95 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQF-HSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF   95 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhccc-chhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence            379999999999999999999999999999987532 1234466789999999999999999995               


Q ss_pred             ----------HHHHHHHHHhcCchhhH
Q 031846           66 ----------LYQKSLEVAAKAPELHM   82 (152)
Q Consensus        66 ----------~YrkaLe~~~kapel~~   82 (152)
                                .|.++++++.+|.++.+
T Consensus        96 l~P~~~~a~g~~~eA~~~~~kAl~l~P  122 (158)
T 1zu2_A           96 LTPDETEAKHNFDLATQFFQQAVDEQP  122 (158)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             cCcchhhhhccHHHHHHHHHHHHHhCC
Confidence                      36667777777766654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.33  E-value=6.8e-13  Score=94.14  Aligned_cols=53  Identities=11%  Similarity=0.101  Sum_probs=50.2

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|+..|++||+++|++..+|+|||.+|..+|           +|++|+++|++||+++|++
T Consensus        23 ~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~-----------~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A           23 DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK-----------KFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhh-----------hHHHHHHHHHHHHHhCccc
Confidence            4799999999999999999999999999999865           9999999999999999976

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.32  E-value=8.1e-12  Score=85.78  Aligned_cols=54  Identities=15%  Similarity=0.134  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++|+++|++..+|+++|.+|..+|           ++++|+.+|++|++++|++.
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~al~~~p~~~   72 (126)
T 3upv_A           19 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM-----------SFPEAIADCNKAIEKDPNFV   72 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHhCCCcH
Confidence            3789999999999999999999999999999865           99999999999999999986

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.31  E-value=6e-12  Score=88.75  Aligned_cols=55  Identities=16%  Similarity=0.186  Sum_probs=51.4

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      .+++|+..|+++|+++|++.++|++||.++...|           ++++|+.+|++|++++|++..
T Consensus        32 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~al~l~P~~~~   86 (121)
T 1hxi_A           32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE-----------KDGLAIIALNHARMLDPKDIA   86 (121)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHH
Confidence            3689999999999999999999999999999765           999999999999999999964

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.30  E-value=1e-12  Score=94.83  Aligned_cols=72  Identities=21%  Similarity=0.206  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH--------------HH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------------LY   67 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne--------------~Y   67 (152)
                      +++|+..++++++++|++.+++++||.+|..+|           ++++|+++|+++++++|+|.              .|
T Consensus        89 ~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~  157 (184)
T 3vtx_A           89 KQAAIDALQRAIALNTVYADAYYKLGLVYDSMG-----------EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR  157 (184)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHhC-----------CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence            466777777777777777777777777776543           67777777777777777664              25


Q ss_pred             HHHHHHHhcCchhhHHH
Q 031846           68 QKSLEVAAKAPELHMEI   84 (152)
Q Consensus        68 rkaLe~~~kapel~~e~   84 (152)
                      .++++.+.++.+++++-
T Consensus       158 ~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          158 DEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             HHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHhCCccC
Confidence            55566666666555543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.30  E-value=4.7e-12  Score=94.52  Aligned_cols=54  Identities=13%  Similarity=-0.002  Sum_probs=49.5

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|++++++||+++++|++||.+|..+|           +|++|+++|++|++++|+|.
T Consensus        51 ~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g-----------~~~~Ai~~~~~al~l~P~~~  104 (151)
T 3gyz_A           51 RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE-----------QFQQAADLYAVAFALGKNDY  104 (151)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSSSCC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----------cHHHHHHHHHHHHhhCCCCc
Confidence            3789999999999999999999999999999765           99999999999999999985

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.28  E-value=2.6e-11  Score=86.03  Aligned_cols=54  Identities=13%  Similarity=0.089  Sum_probs=50.4

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++++++|++.++|++||.+|...|           ++++|+.+|++|++++|+|.
T Consensus        33 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~   86 (142)
T 2xcb_A           33 KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG-----------LYEQALQSYSYGALMDINEP   86 (142)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCT
T ss_pred             cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHhcCCCCc
Confidence            3789999999999999999999999999999764           99999999999999999985

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.27  E-value=2.5e-11  Score=80.12  Aligned_cols=70  Identities=26%  Similarity=0.283  Sum_probs=58.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChH-HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH------HHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHD-TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL------YQKSLEV   73 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~d-A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~------YrkaLe~   73 (152)
                      .+++|+..|+++++++|++.. ++++||.+|..+           +++++|+++|++|++++|++..      +.++++.
T Consensus        15 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~   83 (99)
T 2kc7_A           15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL-----------GDWQKALNNYQSAIELNPDSPALQARKMVMDILNF   83 (99)
T ss_dssp             CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            378999999999999999999 999999999975           4999999999999999999864      3455555


Q ss_pred             HhcCchhh
Q 031846           74 AAKAPELH   81 (152)
Q Consensus        74 ~~kapel~   81 (152)
                      +.+...+.
T Consensus        84 ~~~~~~~~   91 (99)
T 2kc7_A           84 YNKDMYNQ   91 (99)
T ss_dssp             HCCTTHHH
T ss_pred             HHHHhccC
Confidence            55555444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.27  E-value=2.4e-11  Score=88.38  Aligned_cols=71  Identities=13%  Similarity=0.088  Sum_probs=61.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------   65 (152)
                      .+++|+..|+++++++|++.++|++||.+|..+|           ++++|+++|++|++++|+|.               
T Consensus        36 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~  104 (148)
T 2vgx_A           36 XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG-----------QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE  104 (148)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence            3789999999999999999999999999999765           99999999999999999984               


Q ss_pred             ------HHHHHHHHHhcCchhhH
Q 031846           66 ------LYQKSLEVAAKAPELHM   82 (152)
Q Consensus        66 ------~YrkaLe~~~kapel~~   82 (152)
                            .|++++++.+..|+.+.
T Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~  127 (148)
T 2vgx_A          105 LAEAESGLFLAQELIANXPEFXE  127 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHHHHHCcCCCcchH
Confidence                  46777777777776643

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.27  E-value=3.3e-12  Score=92.70  Aligned_cols=80  Identities=10%  Similarity=0.148  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      +++||+.|++++..+|+++.++|+||++|...|           +|++|+++|++||+++|+|.                
T Consensus        13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~-----------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A           13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAK-----------EYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            689999999999999999999999999999865           99999999999999999995                


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHHhhhccC
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHKHGLGQQ   92 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~~~~~q~   92 (152)
                           .|++++++.+..++.+..+..-...++
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  113 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKND  113 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence                 588999999999999999988776554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.26  E-value=1.5e-11  Score=91.76  Aligned_cols=62  Identities=15%  Similarity=0.114  Sum_probs=56.2

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV   73 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~   73 (152)
                      .+++|+..|++|++++|+++++|++||++|..+|           ++++|+.+|++|++++|+++.-+++-++
T Consensus        85 ~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg-----------~~~eA~~~~~~al~l~~~~~~~~~A~~l  146 (151)
T 3gyz_A           85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLK-----------APLKAKECFELVIQHSNDEKLKIKAQSY  146 (151)
T ss_dssp             CHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            4799999999999999999999999999999865           9999999999999999999866655544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.25  E-value=3.8e-11  Score=86.35  Aligned_cols=69  Identities=20%  Similarity=0.153  Sum_probs=58.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------   65 (152)
                      .+++|+..|+++|+++|++..+|++||.+|..+|           +|++|+.+|++|++++|+|.               
T Consensus        26 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~   94 (164)
T 3sz7_A           26 EYSKAIDLYTQALSIAPANPIYLSNRAAAYSASG-----------QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMAD   94 (164)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Confidence            3789999999999999999999999999998764           89999999999999999885               


Q ss_pred             ------HHHHHHHHHhcCchh
Q 031846           66 ------LYQKSLEVAAKAPEL   80 (152)
Q Consensus        66 ------~YrkaLe~~~kapel   80 (152)
                            .|++++++.+..++.
T Consensus        95 ~~~A~~~~~~al~~~p~~~~~  115 (164)
T 3sz7_A           95 YKGAKEAYEKGIEAEGNGGSD  115 (164)
T ss_dssp             HHHHHHHHHHHHHHHSSSCCH
T ss_pred             HHHHHHHHHHHHHhCCCchHH
Confidence                  477777777777773

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.21  E-value=4e-11  Score=86.06  Aligned_cols=63  Identities=11%  Similarity=0.167  Sum_probs=56.5

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-HHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-LYQKSLEVA   74 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne-~YrkaLe~~   74 (152)
                      .+++|+..|++||+++|++..+|+++|.+|..+|           +|++|+.+|++|++++|+|. ..++.|...
T Consensus        78 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g-----------~~~~A~~~~~~al~l~p~~~~~~~~~l~~~  141 (162)
T 3rkv_A           78 DLHEAEETSSEVLKREETNEKALFRRAKARIAAW-----------KLDEAEEDLKLLLRNHPAAASVVAREMKIV  141 (162)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh-----------cHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            3789999999999999999999999999999865           99999999999999999998 666666543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.20  E-value=4.5e-11  Score=82.23  Aligned_cols=53  Identities=17%  Similarity=0.263  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHhc---CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMV---SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~i---dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|+++|++   +|++..++++||.+|..+|           +|++|+.+|++|++++|+|.
T Consensus         6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~~~p~~~   61 (117)
T 3k9i_A            6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG-----------EYRKAEAVLANGVKQFPNHQ   61 (117)
T ss_dssp             -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCch
Confidence            45667777777777   5667777777777776543           67777777777777777664

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.20  E-value=4.5e-11  Score=109.76  Aligned_cols=81  Identities=17%  Similarity=0.244  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      +++|+..|++||+++|++.++|+|||++|..+           +++++|+++|+|||+++|++.                
T Consensus        59 ~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~-----------g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~  127 (723)
T 4gyw_A           59 LQEALMHYKEAIRISPTFADAYSNMGNTLKEM-----------QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI  127 (723)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            45555555555555555555555555555543           377777777777777777775                


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHHhhhccCC
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHKHGLGQQT   93 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~~~~~q~~   93 (152)
                           .|+++|++.+..++.+.++...+..++-
T Consensus       128 ~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~  160 (723)
T 4gyw_A          128 PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD  160 (723)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence                 3677777777777777777776655553

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.18  E-value=1.2e-10  Score=76.78  Aligned_cols=53  Identities=11%  Similarity=0.089  Sum_probs=50.4

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|+..|+++|+++|++..++++||.+|..+|           ++++|+++|++|++++|+|
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A           19 LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLG-----------EYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTSCSST
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHhCCCc
Confidence            3789999999999999999999999999999865           9999999999999999998

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.18  E-value=9.6e-11  Score=88.97  Aligned_cols=90  Identities=16%  Similarity=0.207  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      +++|+..|+++|+++|++.+++++||.+|...+....+.....+++++|+.+|++|++++|++.                
T Consensus        55 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~  134 (217)
T 2pl2_A           55 VNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGER  134 (217)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh
Confidence            6889999999999999999999999999987522222222223799999999999999999985                


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHHhhhccC
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHKHGLGQQ   92 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~~~~~q~   92 (152)
                           .|++++++. ..++.+..+......+|
T Consensus       135 ~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g  165 (217)
T 2pl2_A          135 DKAEASLKQALALE-DTPEIRSALAELYLSMG  165 (217)
T ss_dssp             HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcc-cchHHHHHHHHHHHHcC
Confidence                 467777777 77888888777665444

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.17  E-value=2.2e-10  Score=78.33  Aligned_cols=54  Identities=9%  Similarity=-0.093  Sum_probs=50.8

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++|+++|++.+++++||.+|..+|           ++++|+.+|++|++++|++.
T Consensus        24 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~al~~~p~~~   77 (137)
T 3q49_B           24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ-----------QPEQALADCRRALELDGQSV   77 (137)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHhCchhH
Confidence            4789999999999999999999999999999764           99999999999999999985

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.17  E-value=7e-11  Score=108.44  Aligned_cols=76  Identities=16%  Similarity=0.257  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      +++|+..|++||+++|++.++|+|||++|..+|           ++++|+++|++||+++|++.                
T Consensus        25 ~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g-----------~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~   93 (723)
T 4gyw_A           25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG-----------KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDV   93 (723)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            455666666666666666666666666665543           56666666666666666552                


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHHhh
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHKHG   88 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~~~   88 (152)
                           .|++++++.+..++.|..+..-.
T Consensus        94 ~~A~~~~~kAl~l~P~~~~a~~~Lg~~~  121 (723)
T 4gyw_A           94 QGALQCYTRAIQINPAFADAHSNLASIH  121 (723)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                 35555555555555555555443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.17  E-value=4.2e-11  Score=90.39  Aligned_cols=78  Identities=18%  Similarity=0.325  Sum_probs=69.1

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHH----------------hHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWC----------------LGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~n----------------LGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|+..|+++|+++|++.++|++                ||.+|...|           ++++|+.+|++||+++|+|
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~   87 (208)
T 3urz_A           19 QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR-----------NYDKAYLFYKELLQKAPNN   87 (208)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHCCCC
Confidence            4789999999999999999999999                999999765           9999999999999999999


Q ss_pred             H---------------------HHHHHHHHHhcCchhhHHHHHhhh
Q 031846           65 E---------------------LYQKSLEVAAKAPELHMEIHKHGL   89 (152)
Q Consensus        65 e---------------------~YrkaLe~~~kapel~~e~~~~~~   89 (152)
                      .                     .|++++++.+..++.+..+.....
T Consensus        88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY  133 (208)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            5                     478888888888888888776543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.16  E-value=4.5e-11  Score=92.98  Aligned_cols=72  Identities=17%  Similarity=0.095  Sum_probs=57.3

Q ss_pred             CHHHHHHHHHHHHhcCCC-------ChH-----HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc-------C
Q 031846            1 MILDAISKLEEALMVSPN-------RHD-----TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE-------E   61 (152)
Q Consensus         1 mieeAIs~leeAL~idP~-------~~d-----A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel-------d   61 (152)
                      .+++|+.+|++||+++|+       ++.     +|+|+|.++..+|           +|++|+.||++||++       +
T Consensus        26 ~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg-----------r~~eAl~~~~kAL~l~n~~~e~~   94 (159)
T 2hr2_A           26 EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR-----------SFDEALHSADKALHYFNRRGELN   94 (159)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             CHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhhhccccCC
Confidence            479999999999999999       665     9999999999876           788888888888888       9


Q ss_pred             CCcH--H----------------HHHHHHHHhcCchhhHH
Q 031846           62 PSNE--L----------------YQKSLEVAAKAPELHME   83 (152)
Q Consensus        62 P~Ne--~----------------YrkaLe~~~kapel~~e   83 (152)
                      |++.  .                |..+++.+.++.++.++
T Consensus        95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A           95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            9884  2                34455666666666554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.16  E-value=1.7e-10  Score=87.64  Aligned_cols=81  Identities=17%  Similarity=0.132  Sum_probs=66.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------   65 (152)
                      .+++|+..|+++|+++|++.+++++||.+|..+|           ++++|+.+|++|++++|++.               
T Consensus        20 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~   88 (217)
T 2pl2_A           20 RYDAALTLFERALKENPQDPEALYWLARTQLKLG-----------LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYR   88 (217)
T ss_dssp             CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh
Confidence            3789999999999999999999999999999865           99999999999999999984               


Q ss_pred             -----------------HHHHHHHHHhcCchhhHHHHHhhhccC
Q 031846           66 -----------------LYQKSLEVAAKAPELHMEIHKHGLGQQ   92 (152)
Q Consensus        66 -----------------~YrkaLe~~~kapel~~e~~~~~~~q~   92 (152)
                                       .|++++++.+..++.+..+..-...+|
T Consensus        89 ~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g  132 (217)
T 2pl2_A           89 QAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG  132 (217)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence                             234455556666666666666555444

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.16  E-value=1.7e-11  Score=84.32  Aligned_cols=67  Identities=12%  Similarity=0.114  Sum_probs=58.4

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH---HHHHHHHHhcC
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL---YQKSLEVAAKA   77 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~---YrkaLe~~~ka   77 (152)
                      .+++|+..|+++|+++|++.+++++||.+|..+|           ++++|+++|++|++++|+++.   |.+++....+.
T Consensus        42 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~  110 (117)
T 3k9i_A           42 EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG-----------RYEQGVELLLKIIAETSDDETIQSYKQAILFYADK  110 (117)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999754           999999999999999999874   66666665554


Q ss_pred             c
Q 031846           78 P   78 (152)
Q Consensus        78 p   78 (152)
                      .
T Consensus       111 l  111 (117)
T 3k9i_A          111 L  111 (117)
T ss_dssp             T
T ss_pred             H
Confidence            3

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.16  E-value=2.3e-10  Score=73.15  Aligned_cols=60  Identities=28%  Similarity=0.463  Sum_probs=54.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL   71 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaL   71 (152)
                      .+++|+..|+++++++|++..++++||.+|...|           ++++|+.+|++|++++|++......+
T Consensus        24 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~p~~~~~~~~l   83 (91)
T 1na3_A           24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG-----------DYDEAIEYYQKALELDPNNAEAKQNL   83 (91)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            3789999999999999999999999999999754           99999999999999999997665554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.15  E-value=2.2e-10  Score=82.52  Aligned_cols=80  Identities=16%  Similarity=0.118  Sum_probs=63.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------   65 (152)
                      .+++|+..|++||++||++.+++++||.+|..+|           ++++|+.+|++++..+|++.               
T Consensus        20 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (184)
T 3vtx_A           20 DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIG-----------LPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDE   88 (184)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCC
Confidence            4799999999999999999999999999999865           88888888888888888875               


Q ss_pred             ------HHHHHHHHHhcCchhhHHHHHhhhcc
Q 031846           66 ------LYQKSLEVAAKAPELHMEIHKHGLGQ   91 (152)
Q Consensus        66 ------~YrkaLe~~~kapel~~e~~~~~~~q   91 (152)
                            .+.+++++.+..++.+..+......+
T Consensus        89 ~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~  120 (184)
T 3vtx_A           89 KQAAIDALQRAIALNTVYADAYYKLGLVYDSM  120 (184)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHh
Confidence                  24555555566666666665544433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.15  E-value=1.2e-10  Score=79.87  Aligned_cols=64  Identities=16%  Similarity=0.095  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC------CCcHHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE------PSNELYQKSLEVA   74 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld------P~Ne~YrkaLe~~   74 (152)
                      .+++|+..|+++|+++|++..+|++||.+|..+|           ++++|+++|++|++++      |+|...+..+...
T Consensus        53 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~  121 (126)
T 3upv_A           53 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK-----------EYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  121 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh-----------CHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence            4789999999999999999999999999999865           9999999999999999      9998777777654


Q ss_pred             h
Q 031846           75 A   75 (152)
Q Consensus        75 ~   75 (152)
                      .
T Consensus       122 ~  122 (126)
T 3upv_A          122 S  122 (126)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.15  E-value=5.9e-11  Score=85.34  Aligned_cols=64  Identities=20%  Similarity=0.215  Sum_probs=57.4

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH--HHHHHHHHh
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL--YQKSLEVAA   75 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~--YrkaLe~~~   75 (152)
                      .+++|+..|+++|+++|++..+|++||.+|..+|           ++++|+.+|++|++++|+|..  +++.+....
T Consensus        60 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A           60 QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMA-----------DYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            4789999999999999999999999999999865           999999999999999999965  777776543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.15  E-value=6.3e-11  Score=86.13  Aligned_cols=56  Identities=7%  Similarity=-0.096  Sum_probs=51.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELY   67 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Y   67 (152)
                      .+++|+..|+++|+++|++.+++++||.+|..+|           ++++|+.+|++|++++|+|+.+
T Consensus        70 ~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           70 QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXG-----------ELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHTTCGGG
T ss_pred             hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCCCcc
Confidence            4789999999999999999999999999999765           9999999999999999997654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.14  E-value=2.1e-10  Score=76.79  Aligned_cols=53  Identities=17%  Similarity=0.100  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|+++++++|++.++++++|.+|...           +++++|+.+|++|++++|++.
T Consensus        32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~a~~~~~~~~   84 (133)
T 2lni_A           32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL-----------LEFQLALKDCEECIQLEPTFI   84 (133)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTT-----------TCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHhCCCch
Confidence            68999999999999999999999999999875           499999999999999999985

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.14  E-value=6.3e-11  Score=84.01  Aligned_cols=61  Identities=10%  Similarity=0.030  Sum_probs=54.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   72 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe   72 (152)
                      .+++|+..|+++++++|++++++++||.+|..+|           ++++|+.+|++|++++|+|+.+....+
T Consensus        67 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~  127 (142)
T 2xcb_A           67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLG-----------DLDGAESGFYSARALAAAQPAHEALAA  127 (142)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence            4789999999999999999999999999999865           999999999999999999876655443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.11  E-value=1.5e-10  Score=83.07  Aligned_cols=74  Identities=15%  Similarity=0.074  Sum_probs=61.2

Q ss_pred             CHHHHHHHHHHHHhc------------------CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846            1 MILDAISKLEEALMV------------------SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP   62 (152)
Q Consensus         1 mieeAIs~leeAL~i------------------dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP   62 (152)
                      .+++|+..|++||++                  +|.+..+|+|||.+|..+|           +|++|+.+|++||+++|
T Consensus        26 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-----------~~~~A~~~~~~al~~~p   94 (162)
T 3rkv_A           26 DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG-----------DLHEAEETSSEVLKREE   94 (162)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-----------cHHHHHHHHHHHHhcCC
Confidence            378999999999999                  8888899999999999764           99999999999999999


Q ss_pred             CcH---------------------HHHHHHHHHhcCc-hhhHHHH
Q 031846           63 SNE---------------------LYQKSLEVAAKAP-ELHMEIH   85 (152)
Q Consensus        63 ~Ne---------------------~YrkaLe~~~kap-el~~e~~   85 (152)
                      +|.                     .|++++++.+..+ .+..++.
T Consensus        95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~  139 (162)
T 3rkv_A           95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK  139 (162)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            995                     3666666666655 4444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.09  E-value=5e-10  Score=73.02  Aligned_cols=54  Identities=24%  Similarity=0.158  Sum_probs=48.1

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++++++|++.++++++|.+|...           +++++|+.+|+++++++|++.
T Consensus        19 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~   72 (118)
T 1elw_A           19 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK-----------GDYQKAYEDGCKTVDLKPDWG   72 (118)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh-----------ccHHHHHHHHHHHHHhCcccH
Confidence            368899999999999999999999999999875           489999999999999999885

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.09  E-value=3.2e-10  Score=85.55  Aligned_cols=60  Identities=18%  Similarity=0.087  Sum_probs=54.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL   71 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaL   71 (152)
                      .+++|+..|+++|+++|++.+++++||.+|...|           ++++|+.+|++|++++|+|......+
T Consensus        69 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~P~~~~a~~~l  128 (208)
T 3urz_A           69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG-----------QEKDALRMYEKILQLEADNLAANIFL  128 (208)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            4789999999999999999999999999999754           99999999999999999997544443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=6.2e-10  Score=76.04  Aligned_cols=54  Identities=13%  Similarity=0.078  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++++++|++   ..+++++|.+|...+           ++++|+.+|+++++++|++.
T Consensus        43 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~   99 (148)
T 2dba_A           43 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE-----------DYDKAETEASKAIEKDGGDV   99 (148)
T ss_dssp             CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHTSCCH
T ss_pred             CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc-----------cHHHHHHHHHHHHhhCccCH
Confidence            3678888888888888887   888888888887654           88888888888888888874

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.09  E-value=8.5e-11  Score=79.84  Aligned_cols=53  Identities=17%  Similarity=0.196  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|+..|+++|+++|++.++|++||.+|..+|           ++++|+++|++|+++.|++
T Consensus        22 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A           22 NASRALALFEELVETDPDYVGTYYHLGKLYERLD-----------RTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhhhcC
Confidence            4789999999999999999999999999999765           9999999999999998855

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.09  E-value=2.3e-10  Score=77.76  Aligned_cols=52  Identities=21%  Similarity=0.289  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      ++|+..|+++++++|++..++++||.+|...|           ++++|+.+|++|++++|++.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~   53 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHE-----------QFDAALPHLRAALDFDPTYS   53 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHCCCcH
Confidence            67999999999999999999999999999764           99999999999999999985

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.07  E-value=1.1e-09  Score=72.35  Aligned_cols=53  Identities=13%  Similarity=0.117  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|+++++++|++..+++++|.+|...|           ++++|+++|+++++++|++.
T Consensus        28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~   80 (131)
T 2vyi_A           28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG-----------NYAGAVQDCERAICIDPAYS   80 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh-----------chHHHHHHHHHHHhcCccCH
Confidence            688999999999999999999999999998754           89999999999999999885

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=8.2e-10  Score=75.41  Aligned_cols=64  Identities=20%  Similarity=0.229  Sum_probs=57.7

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA   75 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~   75 (152)
                      .+++|+..|+++++++|++.++++++|.+|..+           +++++|+.+|+++++++|++..+...+....
T Consensus        80 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           80 DYDKAETEASKAIEKDGGDVKALYRRSQALEKL-----------GRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             CHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            378999999999999999999999999999875           4999999999999999999988877775543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.05  E-value=9.6e-10  Score=81.93  Aligned_cols=67  Identities=15%  Similarity=0.164  Sum_probs=53.6

Q ss_pred             CHHHHHHHHHHHHhcCC-CChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH--------------
Q 031846            1 MILDAISKLEEALMVSP-NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------------   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP-~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne--------------   65 (152)
                      .+++|+..|+++|+++| .+..+++++|.+|..+|           ++++|+++|++|++++|++.              
T Consensus        22 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   90 (228)
T 4i17_A           22 NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK-----------KYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMK   90 (228)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh-----------cHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcc
Confidence            36788888888888888 88888888888888754           88888888888888888874              


Q ss_pred             -------HHHHHHHHHhcCc
Q 031846           66 -------LYQKSLEVAAKAP   78 (152)
Q Consensus        66 -------~YrkaLe~~~kap   78 (152)
                             .|++++++.+..+
T Consensus        91 ~~~~A~~~~~~al~~~p~~~  110 (228)
T 4i17_A           91 NNQEYIATLTEGIKAVPGNA  110 (228)
T ss_dssp             CHHHHHHHHHHHHHHSTTCH
T ss_pred             cHHHHHHHHHHHHHHCCCcH
Confidence                   3666666666666

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.05  E-value=5.2e-10  Score=94.74  Aligned_cols=53  Identities=4%  Similarity=0.031  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|++||++||++.++|+++|.+|..+           +++++|+.+|++||+++|+|.
T Consensus       148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~-----------g~~~eAl~~~~kal~ldP~~~  200 (382)
T 2h6f_A          148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL-----------RDPSQELEFIADILNQDAKNY  200 (382)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------TCCTTHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhCccCH
Confidence            34444444444444444444444444444432           255555555666666666554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.04  E-value=3.2e-10  Score=79.81  Aligned_cols=54  Identities=24%  Similarity=0.150  Sum_probs=45.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|++||+++|++.+++++||.+|...           +++++|+.+|+++++++|++.
T Consensus        66 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           66 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNE-----------HNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHC------
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCcCCC
Confidence            368999999999999999999999999999975           599999999999999999874

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.03  E-value=4e-10  Score=95.44  Aligned_cols=74  Identities=14%  Similarity=0.076  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHh-HHHHHHHHHHHHHcCCCcH---------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEY-FNKATLYFQQAVDEEPSNE---------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~-~ekA~~~FqkAleldP~Ne---------------   65 (152)
                      +++|+..|+++|++||++.++|+++|++|..+|           + +++|+.+|++||+++|+|.               
T Consensus       113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g-----------~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~  181 (382)
T 2h6f_A          113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ-----------KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD  181 (382)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcc-----------cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC
Confidence            456666666666666666666666666666543           3 6666666666666666652               


Q ss_pred             ------HHHHHHHHHhcCchhhHHHHH
Q 031846           66 ------LYQKSLEVAAKAPELHMEIHK   86 (152)
Q Consensus        66 ------~YrkaLe~~~kapel~~e~~~   86 (152)
                            .|+++|++.++.++.+..++.
T Consensus       182 ~~eAl~~~~kal~ldP~~~~a~~~lg~  208 (382)
T 2h6f_A          182 PSQELEFIADILNQDAKNYHAWQHRQW  208 (382)
T ss_dssp             CTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccCHHHHHHHHH
Confidence                  456666666655555554444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.03  E-value=1.3e-10  Score=90.39  Aligned_cols=54  Identities=13%  Similarity=0.082  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHHHHhc-------CCCChHHH----HHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMV-------SPNRHDTL----WCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~i-------dP~~~dA~----~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .++||+..|++||++       +|++..+|    ||+|++|..+|           ++++|+.||++|++++|++.
T Consensus        72 r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lg-----------r~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A           72 SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLG-----------RGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCcH
Confidence            378999999999999       99999999    99999999865           99999999999999999884

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.03  E-value=1.8e-09  Score=69.89  Aligned_cols=60  Identities=13%  Similarity=0.153  Sum_probs=53.6

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC--cHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS--NELYQKSL   71 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~--Ne~YrkaL   71 (152)
                      .+++|+..|+++++++|++.++++++|.+|..+|           ++++|+++|+++++++|+  +......+
T Consensus        21 ~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A           21 NYTESIDLFEKAIQLDPEESKYWLMKGKALYNLE-----------RYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            3789999999999999999999999999999764           999999999999999999  76544444

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.02  E-value=1.8e-09  Score=70.37  Aligned_cols=63  Identities=13%  Similarity=0.091  Sum_probs=56.6

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   74 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~   74 (152)
                      .+++|+..|+++++++|++..+++++|.+|...|           ++++|+++|+++++++|++......+...
T Consensus        53 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           53 DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN-----------RFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            3789999999999999999999999999999764           99999999999999999998777666543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.02  E-value=4.5e-10  Score=79.47  Aligned_cols=61  Identities=21%  Similarity=0.272  Sum_probs=51.5

Q ss_pred             CHHHHHHHHHHHHhcCCCCh-------HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRH-------DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   72 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~-------dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe   72 (152)
                      .+++|+..|++||+++|++.       .+|++||++|..+           +++++|+++|++||+++|+.+..++..+
T Consensus        57 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~-----------~~~~~A~~~~~kal~~~~~~~~~~~l~~  124 (127)
T 4gcn_A           57 KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQ-----------NDLSLAVQWFHRSLSEFRDPELVKKVKE  124 (127)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCcCHHHHHHHHH
Confidence            47899999999999999875       4788888888765           5999999999999999998777665444

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.01  E-value=2.3e-09  Score=74.45  Aligned_cols=52  Identities=13%  Similarity=0.015  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +++|+..|+++++++|++.++++++|.+|...|           ++++|+++|++|++++|++
T Consensus        29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~a~~~~~~~   80 (166)
T 1a17_A           29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-----------CYGYALGDATRAIELDKKY   80 (166)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCccc
Confidence            445555555555555555555555555555432           5555555555555555554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.00  E-value=1.9e-09  Score=72.91  Aligned_cols=53  Identities=25%  Similarity=0.297  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHhcCCCCh---HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVSPNRH---DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~---dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|+..|+++++++|++.   +++++||.+|...|           ++++|+.+|+++++++|++
T Consensus        17 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~-----------~~~~A~~~~~~~~~~~p~~   72 (129)
T 2xev_A           17 KYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR-----------NFQLAEAQFRDLVSRYPTH   72 (129)
T ss_dssp             CHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTS
T ss_pred             CHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHCCCC
Confidence            36788888888888888888   78888888888754           8888888888888888887

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.00  E-value=2.6e-09  Score=72.25  Aligned_cols=63  Identities=16%  Similarity=0.121  Sum_probs=56.8

Q ss_pred             CHHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   74 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~   74 (152)
                      .+++|+..|+++++++|++   .+++++||.+|..+|           ++++|+.+|+++++.+|+++....++...
T Consensus        54 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           54 NFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG-----------KNTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            3789999999999999999   999999999999765           99999999999999999999877766543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.00  E-value=5.1e-10  Score=83.42  Aligned_cols=54  Identities=11%  Similarity=0.041  Sum_probs=51.2

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++++++|++.+++++||.+|..+|           ++++|+++|++|++++|+|.
T Consensus        57 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~al~~~p~~~  110 (228)
T 4i17_A           57 KYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMK-----------NNQEYIATLTEGIKAVPGNA  110 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSTTCH
T ss_pred             cHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHCCCcH
Confidence            4789999999999999999999999999999865           99999999999999999987

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.00  E-value=1.4e-09  Score=75.56  Aligned_cols=55  Identities=11%  Similarity=0.103  Sum_probs=51.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      .+++|+..|+++++++|++..+++++|.+|..+|           ++++|+.+|+++++++|++..
T Consensus        62 ~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~a~~~~p~~~~  116 (166)
T 1a17_A           62 CYGYALGDATRAIELDKKYIKGYYRRAASNMALG-----------KFRAALRDYETVVKVKPHDKD  116 (166)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSTTCHH
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHhCCCCHH
Confidence            3789999999999999999999999999999765           999999999999999999864

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.99  E-value=3.4e-09  Score=69.40  Aligned_cols=54  Identities=30%  Similarity=0.497  Sum_probs=47.8

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++++++|++.++++++|.+|...|           ++++|+.+|+++++++|++.
T Consensus        24 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~   77 (125)
T 1na0_A           24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG-----------DYDEAIEYYQKALELDPNNA   77 (125)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhCCccH
Confidence            3688999999999999999999999999998754           89999999999999999875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.98  E-value=1.5e-09  Score=88.74  Aligned_cols=75  Identities=15%  Similarity=0.131  Sum_probs=62.3

Q ss_pred             CHHHHHHHHHHHHhcCCCC---------------hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNR---------------HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~---------------~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|++||+++|++               ..+|+|||.+|..+|           +|++|+.+|++||+++|+|.
T Consensus       162 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g-----------~~~~A~~~~~~al~~~p~~~  230 (336)
T 1p5q_A          162 KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ-----------AFSAAIESCNKALELDSNNE  230 (336)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCcH
Confidence            4789999999999999999               699999999999865           89999999999999999885


Q ss_pred             ---------------------HHHHHHHHHhcCchhhHHHHH
Q 031846           66 ---------------------LYQKSLEVAAKAPELHMEIHK   86 (152)
Q Consensus        66 ---------------------~YrkaLe~~~kapel~~e~~~   86 (152)
                                           .|++++++.+..++.+.++..
T Consensus       231 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~  272 (336)
T 1p5q_A          231 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV  272 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence                                 366666666666666665554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.97  E-value=3.2e-09  Score=78.35  Aligned_cols=77  Identities=16%  Similarity=0.062  Sum_probs=64.7

Q ss_pred             CHHHHHHHHHHHHhcCCCCh----------------HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVSPNRH----------------DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~----------------dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|+..|+++|+++|++.                .++++||.+|..+|           ++++|+.+|++|++++|++
T Consensus        53 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~  121 (198)
T 2fbn_A           53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK-----------DYPKAIDHASKVLKIDKNN  121 (198)
T ss_dssp             CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSTTC
T ss_pred             CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHhCccc
Confidence            47899999999999999998                89999999999764           9999999999999999998


Q ss_pred             H---------------------HHHHHHHHHhcCchhhHHHHHhh
Q 031846           65 E---------------------LYQKSLEVAAKAPELHMEIHKHG   88 (152)
Q Consensus        65 e---------------------~YrkaLe~~~kapel~~e~~~~~   88 (152)
                      .                     .|++++++.+..++++..+.+-.
T Consensus       122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A          122 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            5                     36666777777777666665543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.97  E-value=2e-09  Score=79.42  Aligned_cols=63  Identities=22%  Similarity=0.269  Sum_probs=56.7

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   74 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~   74 (152)
                      .+++|+..|+++|+++|++..+++++|.+|..+           +++++|+++|++|++++|++...+..+...
T Consensus       103 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  165 (198)
T 2fbn_A          103 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYF-----------GFLEEAKENLYKAASLNPNNLDIRNSYELC  165 (198)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-----------ccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence            378999999999999999999999999999875           499999999999999999998777666544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.96  E-value=2.4e-09  Score=71.60  Aligned_cols=60  Identities=18%  Similarity=0.124  Sum_probs=53.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL   71 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaL   71 (152)
                      .+++|+..|+++++++|++..++++||.+|...|           ++++|+.+|+++++++|++......+
T Consensus        65 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~~~l  124 (133)
T 2lni_A           65 EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMK-----------DYTKAMDVYQKALDLDSSCKEAADGY  124 (133)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCGGGTHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            3789999999999999999999999999999764           99999999999999999886544433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.96  E-value=4.2e-09  Score=69.45  Aligned_cols=60  Identities=25%  Similarity=0.392  Sum_probs=54.1

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL   71 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaL   71 (152)
                      .+++|+..|+++++++|++..+++++|.+|...|           ++++|+.+|+++++++|++..+...+
T Consensus        61 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~~~l  120 (131)
T 2vyi_A           61 NYAGAVQDCERAICIDPAYSKAYGRMGLALSSLN-----------KHVEAVAYYKKALELDPDNETYKSNL  120 (131)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHhcCccchHHHHHH
Confidence            3789999999999999999999999999999754           99999999999999999987655544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.95  E-value=8.5e-10  Score=85.61  Aligned_cols=67  Identities=24%  Similarity=0.252  Sum_probs=60.7

Q ss_pred             CHHHHHHHHHHHHhcC-C-CChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCc
Q 031846            1 MILDAISKLEEALMVS-P-NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAP   78 (152)
Q Consensus         1 mieeAIs~leeAL~id-P-~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kap   78 (152)
                      +++++|..|++.++.+ | ++.|++|+||.+|++++           +|++|..||+++|+++|+|...+..+++.++..
T Consensus        50 ~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~-----------~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           50 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK-----------EYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            3679999999999999 8 78999999999999865           999999999999999999999999988887543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.93  E-value=3e-09  Score=86.91  Aligned_cols=60  Identities=27%  Similarity=0.288  Sum_probs=54.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL   71 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaL   71 (152)
                      .+++|+..|++||+++|++..+|++||.+|..+|           ++++|+.+|++|++++|+|......|
T Consensus       211 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~al~l~P~~~~a~~~l  270 (336)
T 1p5q_A          211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN-----------DFELARADFQKVLQLYPNNKAAKTQL  270 (336)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            4789999999999999999999999999999865           99999999999999999997544443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.93  E-value=1.4e-09  Score=79.57  Aligned_cols=54  Identities=9%  Similarity=0.042  Sum_probs=49.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++++++|++..++++||.+|..+|           ++++|+++|++|+++.|+|.
T Consensus        52 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           52 NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE-----------KYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTTTTCS
T ss_pred             CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHhCCCcc
Confidence            3789999999999999999999999999999764           99999999999999999764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.93  E-value=5.2e-10  Score=81.69  Aligned_cols=80  Identities=13%  Similarity=0.014  Sum_probs=65.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH--------------
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL--------------   66 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~--------------   66 (152)
                      .+++|+..|+++|+++|++.+++++||.+|...|           ++++|+.+|+++++++| +..              
T Consensus        21 ~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~   88 (176)
T 2r5s_A           21 EHAQALNVIQTLSDELQSRGDVKLAKADCLLETK-----------QFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQA   88 (176)
T ss_dssp             CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT-----------CHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC-----------CHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhc
Confidence            3689999999999999999999999999999765           99999999999999999 642              


Q ss_pred             --------HHHHHHHHhcCchhhHHHHHhhhccC
Q 031846           67 --------YQKSLEVAAKAPELHMEIHKHGLGQQ   92 (152)
Q Consensus        67 --------YrkaLe~~~kapel~~e~~~~~~~q~   92 (152)
                              |++++++.+..++.+..+......+|
T Consensus        89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g  122 (176)
T 2r5s_A           89 AESPELKRLEQELAANPDNFELACELAVQYNQVG  122 (176)
T ss_dssp             TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence                    44455556666777777777665444

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.92  E-value=1.6e-09  Score=74.00  Aligned_cols=52  Identities=15%  Similarity=0.178  Sum_probs=49.2

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS   63 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~   63 (152)
                      .+++|+..|+++++++|++..++++||.+|..+|           ++++|+.+|++|++++|+
T Consensus        58 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           58 QPEQALADCRRALELDGQSVKAHFFLGQCQLEME-----------SYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHChh
Confidence            3789999999999999999999999999999765           999999999999999998

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.91  E-value=1.7e-09  Score=85.87  Aligned_cols=80  Identities=11%  Similarity=0.052  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      +++|+..|+++|+++|++.+++++||.+|...|           ++++|+.+|+++++++|++.                
T Consensus       133 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g-----------~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~  201 (287)
T 3qou_A          133 YTDALPLLXDAWQLSNQNGEIGLLLAETLIALN-----------RSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAAD  201 (287)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT-----------CHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCC-----------CHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhccc
Confidence            689999999999999999999999999999765           99999999999999999653                


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHHhhhccC
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHKHGLGQQ   92 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~~~~~q~   92 (152)
                           .|+++++..+..++++..+...+..+|
T Consensus       202 ~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g  233 (287)
T 3qou_A          202 TPEIQQLQQQVAENPEDAALATQLALQLHQVG  233 (287)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             CccHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence                 377778888888888888888776555

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.91  E-value=2.2e-09  Score=74.95  Aligned_cols=55  Identities=24%  Similarity=0.199  Sum_probs=50.4

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      +.++|+..|++||++||++..|++.||+++...|           +|++|+.+|+++++.+|+++.
T Consensus        24 ~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g-----------~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A           24 MTDEVSLLLEQALQLEPYNEAALSLIANDHFISF-----------RFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCcc
Confidence            3579999999999999999999999999999865           999999999999999999543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.91  E-value=2.3e-09  Score=95.81  Aligned_cols=81  Identities=16%  Similarity=0.187  Sum_probs=69.4

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------   65 (152)
                      .+++|+..|+++|+++|++.++|+++|++|..+|           ++++|+++|++|++++|+|.               
T Consensus       448 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~  516 (681)
T 2pzi_A          448 DVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG-----------DYDSATKHFTEVLDTFPGELAPKLALAATAELAGN  516 (681)
T ss_dssp             CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence            3789999999999999999999999999998754           99999999999999999884               


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHHhhhccC
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHKHGLGQQ   92 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~~~~~q~   92 (152)
                           .|++++++.+..++.|..+......+|
T Consensus       517 ~~~~~~~~~al~~~P~~~~a~~~lg~~~~~~g  548 (681)
T 2pzi_A          517 TDEHKFYQTVWSTNDGVISAAFGLARARSAEG  548 (681)
T ss_dssp             CCTTCHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHhCCchHHHHHHHHHHHHHcC
Confidence                 377888888888888888887665554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.90  E-value=4.6e-09  Score=87.93  Aligned_cols=71  Identities=15%  Similarity=0.179  Sum_probs=61.1

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchh
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL   80 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel   80 (152)
                      .+++|+..|++||+++|++..+|++||.+|..+|           ++++|+++|++|++++|+|..++..|.......+-
T Consensus       288 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-----------~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~  356 (370)
T 1ihg_A          288 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLK-----------EYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  356 (370)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999764           99999999999999999999877777655444333


Q ss_pred             hH
Q 031846           81 HM   82 (152)
Q Consensus        81 ~~   82 (152)
                      +.
T Consensus       357 ~~  358 (370)
T 1ihg_A          357 QK  358 (370)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.90  E-value=7.9e-09  Score=75.90  Aligned_cols=53  Identities=15%  Similarity=0.155  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|+++++++|++..++++||.+|...|           ++++|+.+|+++++++|++.
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~al~~~~~~~  207 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM-----------SFPEAIADCNKAIEKDPNFV  207 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhCHHHH
Confidence            688999999999999999999999999998754           89999999999999999885

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.88  E-value=1.2e-08  Score=66.64  Aligned_cols=61  Identities=28%  Similarity=0.451  Sum_probs=55.2

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   72 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe   72 (152)
                      .+++|+..|+++++++|++..++++||.+|...|           ++++|+.+|+++++++|++...+..+.
T Consensus        58 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~  118 (125)
T 1na0_A           58 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG-----------DYDEAIEYYQKALELDPNNAEAKQNLG  118 (125)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            3789999999999999999999999999999754           999999999999999999987666654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.88  E-value=5e-09  Score=75.35  Aligned_cols=53  Identities=8%  Similarity=0.088  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHH-HHhcccCCCChHHHHHhH--HHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNA-HTSHAFLTPDQDEAKEYF--NKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnA-y~~~g~l~pd~~eA~~~~--ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|+++++++|++.+++++||.+ |...|           ++  ++|+.+|+++++++|++.
T Consensus        60 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~-----------~~~~~~A~~~~~~al~~~p~~~  115 (177)
T 2e2e_A           60 YSNSLLAYRQALQLRGENAELYAALATVLYYQAS-----------QHMTAQTRAMIDKALALDSNEI  115 (177)
T ss_dssp             HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT-----------TCCCHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-----------CcchHHHHHHHHHHHHhCCCcH
Confidence            4556666666666666666666666666 44332           44  555555555555555553

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.88  E-value=2e-09  Score=73.06  Aligned_cols=53  Identities=17%  Similarity=0.132  Sum_probs=49.2

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|+..|+++|+++|++.++|++||.+|...           +++++|+.+|++|++++|++
T Consensus        34 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~   86 (115)
T 2kat_A           34 QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ-----------GDRAGARQAWESGLAAAQSR   86 (115)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhcccc
Confidence            478999999999999999999999999999975           49999999999999999964

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.87  E-value=5.2e-09  Score=83.10  Aligned_cols=54  Identities=9%  Similarity=-0.093  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|++||+++|++..+|+++|.+|..+|           ++++|+.+|++|++++|+|.
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~   72 (281)
T 2c2l_A           19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ-----------QPEQALADCRRALELDGQSV   72 (281)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHTTSCTTCH
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHhCCCCH
Confidence            3789999999999999999999999999998764           99999999999999999985

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.87  E-value=6.6e-09  Score=89.54  Aligned_cols=75  Identities=13%  Similarity=0.074  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------   65 (152)
                      .+++|+..|++||+++|++..+|++||.+|..+|           ++++|+++|++|++++|++.               
T Consensus        21 ~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           21 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-----------CYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            3788999999999999999999999999998754           89999999999999999884               


Q ss_pred             ------HHHHHHHHHhcCchhhHHHHH
Q 031846           66 ------LYQKSLEVAAKAPELHMEIHK   86 (152)
Q Consensus        66 ------~YrkaLe~~~kapel~~e~~~   86 (152)
                            .|++++++.+..++.+..+..
T Consensus        90 ~~eA~~~~~~al~~~p~~~~~~~~l~~  116 (477)
T 1wao_1           90 FRAALRDYETVVKVKPHDKDAKMKYQE  116 (477)
T ss_dssp             HHHHHHHHHHHHHHSTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                  366666666666666666554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.86  E-value=6.3e-09  Score=68.85  Aligned_cols=53  Identities=13%  Similarity=0.123  Sum_probs=49.1

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|+..|+++++++|++..+++++|.+|...           +++++|+.+|+++++++|++
T Consensus        19 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A           19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEK-----------GDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHhhcccc
Confidence            378999999999999999999999999999875           49999999999999999875

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.86  E-value=4.5e-09  Score=89.60  Aligned_cols=61  Identities=18%  Similarity=0.239  Sum_probs=50.8

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   72 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe   72 (152)
                      .+++|+..|++||+++|++..+||++|.+|..+|           +|++|+.+|++|++++|+|......|.
T Consensus       332 ~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g-----------~~~~A~~~~~~al~l~P~~~~a~~~l~  392 (457)
T 1kt0_A          332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN-----------EFESAKGDFEKVLEVNPQNKAARLQIS  392 (457)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTC----CHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4789999999999999999999999999999865           999999999999999999975444443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.86  E-value=4.7e-09  Score=89.48  Aligned_cols=54  Identities=13%  Similarity=0.092  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHHHHhcCCCC---------------hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNR---------------HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~---------------~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|++||+++|++               ..+|+|||.+|..+|           +|++|+.+|++||+++|+|.
T Consensus       283 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g-----------~~~~A~~~~~~al~~~p~~~  351 (457)
T 1kt0_A          283 KYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR-----------EYTKAVECCDKALGLDSANE  351 (457)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSTTCH
T ss_pred             CHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhcCCccH
Confidence            4789999999999999999               699999999999865           99999999999999999995

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.85  E-value=1.2e-08  Score=76.13  Aligned_cols=52  Identities=21%  Similarity=0.279  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +++|+..|+++++++|++.+++++||.+|...|           ++++|+++|++|++++|++
T Consensus        59 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~~~~  110 (275)
T 1xnf_A           59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAG-----------NFDAAYEAFDSVLELDPTY  110 (275)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHhcCccc
Confidence            566666666666666666666666666666543           6666666666666666655

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.85  E-value=7.7e-09  Score=81.46  Aligned_cols=75  Identities=16%  Similarity=0.153  Sum_probs=63.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH--------------
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL--------------   66 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~--------------   66 (152)
                      .+++|+..|+++++++|++.+++++||.+|..+|           ++++|+.+|++|++++|++..              
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  148 (365)
T 4eqf_A           80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENE-----------NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH  148 (365)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc
Confidence            4789999999999999999999999999999865           999999999999999999862              


Q ss_pred             HHHHHHHHhcCchhhHHHHH
Q 031846           67 YQKSLEVAAKAPELHMEIHK   86 (152)
Q Consensus        67 YrkaLe~~~kapel~~e~~~   86 (152)
                      |.++++.+.++.+++++...
T Consensus       149 ~~~A~~~~~~al~~~p~~~~  168 (365)
T 4eqf_A          149 QQDACEALKNWIKQNPKYKY  168 (365)
T ss_dssp             HHHHHHHHHHHHHHCHHHHC
T ss_pred             HHHHHHHHHHHHHhCccchH
Confidence            56666666666666655433

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.84  E-value=1.2e-08  Score=87.38  Aligned_cols=80  Identities=15%  Similarity=0.248  Sum_probs=60.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------   65 (152)
                      .+++|+..|+++|+++|++.+++++||.+|..+|           ++++|+++|++|++++|++.               
T Consensus        38 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  106 (568)
T 2vsy_A           38 DTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ-----------RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ  106 (568)
T ss_dssp             CHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence            3678888888888888888888888888888654           88888888888888888874               


Q ss_pred             ------HHHHHHHHHhcCchhhHHHHHhhhcc
Q 031846           66 ------LYQKSLEVAAKAPELHMEIHKHGLGQ   91 (152)
Q Consensus        66 ------~YrkaLe~~~kapel~~e~~~~~~~q   91 (152)
                            .|++++++.+..++.+..+......+
T Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A          107 AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence                  36666666666666666666555444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.83  E-value=1.4e-08  Score=80.05  Aligned_cols=76  Identities=18%  Similarity=0.145  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHhcCCC--ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH--------------
Q 031846            2 ILDAISKLEEALMVSPN--RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~--~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne--------------   65 (152)
                      +++|+..|+++++++|+  +.+++++||.+|..+|           ++++|+++|++|++++|++.              
T Consensus       193 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  261 (365)
T 4eqf_A          193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG-----------EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGD  261 (365)
T ss_dssp             HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            56777777777777777  7777777777777643           77777777777777777764              


Q ss_pred             -------HHHHHHHHHhcCchhhHHHHHhh
Q 031846           66 -------LYQKSLEVAAKAPELHMEIHKHG   88 (152)
Q Consensus        66 -------~YrkaLe~~~kapel~~e~~~~~   88 (152)
                             .|++++++.+..++.+..+..-.
T Consensus       262 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          262 RSEEAVEAYTRALEIQPGFIRSRYNLGISC  291 (365)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence                   35555555555555555555543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.83  E-value=1.9e-08  Score=80.05  Aligned_cols=77  Identities=13%  Similarity=0.083  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      +++|+..++++++++|.+.++|++||.+|...           +++++|+++|++|++++|++.                
T Consensus        49 ~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  117 (388)
T 1w3b_A           49 LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER-----------GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM  117 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCH
Confidence            46677777777777777777777777777654           378888888888888888774                


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHHhhh
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHKHGL   89 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~~~~   89 (152)
                           .|+++++..+..+..+..+..-..
T Consensus       118 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~  146 (388)
T 1w3b_A          118 EGAVQAYVSALQYNPDLYCVRSDLGNLLK  146 (388)
T ss_dssp             SHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence                 355556666666666655555444

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.82  E-value=2.7e-09  Score=87.45  Aligned_cols=63  Identities=17%  Similarity=0.210  Sum_probs=45.5

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   74 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~   74 (152)
                      .+++|+..|++||+++|++..+||+||.+|..+|           +|++|+.+|++|++++|+|...+..|...
T Consensus       245 ~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g-----------~~~~A~~~l~~al~l~p~~~~a~~~L~~l  307 (338)
T 2if4_A          245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELG-----------QMDSARDDFRKAQKYAPDDKAIRRELRAL  307 (338)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-----------CHHHHHHHHHHTTC---------------
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            3689999999999999999999999999999865           99999999999999999998777666544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.82  E-value=2.2e-08  Score=77.99  Aligned_cols=53  Identities=21%  Similarity=0.183  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|+++++++|++..++++||.+|...|           ++++|+.+|++|++++|++.
T Consensus       233 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~~~~~  285 (368)
T 1fch_A          233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGN-----------QSEEAVAAYRRALELQPGYI  285 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCcH
Confidence            456666666666666666666666666665543           66666666666666666654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.81  E-value=1.6e-08  Score=77.24  Aligned_cols=59  Identities=17%  Similarity=0.253  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL   71 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaL   71 (152)
                      +++|+..|+++++++|++.++++++|.+|...|           ++++|+++|++|++++|+|+..+..|
T Consensus       288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~A~~~~~~a~~~~p~~~~~~~~l  346 (359)
T 3ieg_A          288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEE-----------MYDEAIQDYEAAQEHNENDQQIREGL  346 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            456666666666666666666666666666543           66666666666666666665544444

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.81  E-value=2.2e-08  Score=79.78  Aligned_cols=77  Identities=18%  Similarity=0.159  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      +++|+..|+++++++|++..+|++||.+|...|           ++++|+.+|++|++++|++.                
T Consensus       151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~  219 (388)
T 1w3b_A          151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG-----------EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF  219 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence            456666666666666666666666666666543           66777777777777777663                


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHHhhh
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHKHGL   89 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~~~~   89 (152)
                           .|++++++.+..+..+..+..-..
T Consensus       220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~  248 (388)
T 1w3b_A          220 DRAVAAYLRALSLSPNHAVVHGNLACVYY  248 (388)
T ss_dssp             THHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence                 345555555555555555554433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.80  E-value=1e-08  Score=87.41  Aligned_cols=82  Identities=20%  Similarity=0.214  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC---CcH-------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP---SNE-------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP---~Ne-------------   65 (152)
                      +++|+..|++||+++|++.++|++||++|..+.|..-+   ..+++++|+++|++|++++|   ++.             
T Consensus       195 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~  271 (474)
T 4abn_A          195 VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ---NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYE  271 (474)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc---ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHc
Confidence            68999999999999999999999999999865110000   11589999999999999999   664             


Q ss_pred             --------HHHHHHHHHhcCchhhHHHHH
Q 031846           66 --------LYQKSLEVAAKAPELHMEIHK   86 (152)
Q Consensus        66 --------~YrkaLe~~~kapel~~e~~~   86 (152)
                              .|++++++.+..++.+..+.+
T Consensus       272 g~~~~A~~~~~~al~l~p~~~~a~~~l~~  300 (474)
T 4abn_A          272 ESYGEALEGFSQAAALDPAWPEPQQREQQ  300 (474)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                    366666666666655555543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.79  E-value=5.2e-09  Score=85.02  Aligned_cols=55  Identities=22%  Similarity=0.055  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +++|+..|++||+++|+++++++++|+++..++.+        +++++|+++|++|++++|++
T Consensus       154 y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~--------~~~~~al~~~~~al~l~p~~  208 (472)
T 4g1t_A          154 NERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW--------PPSQNAIDPLRQAIRLNPDN  208 (472)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS--------CCCCCTHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHHhhcCCcc
Confidence            68999999999999999999999999998765421        24445555555555555554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.79  E-value=4.3e-08  Score=68.04  Aligned_cols=53  Identities=17%  Similarity=0.200  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|+++++++|++..+++++|.+|...           +++++|+++|+++++++|++.
T Consensus        58 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~  110 (186)
T 3as5_A           58 VDRGTELLERSLADAPDNVKVATVLGLTYVQV-----------QKYDLAVPLLIKVAEANPINF  110 (186)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHhcCcHhH
Confidence            45666666666666666666666666666543           366666666666666666654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.78  E-value=6.2e-08  Score=63.46  Aligned_cols=54  Identities=26%  Similarity=0.439  Sum_probs=48.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++++++|++..+++++|.++...           +++++|+.+|+++++++|++.
T Consensus        16 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~   69 (136)
T 2fo7_A           16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-----------GDYDEAIEYYQKALELDPRSA   69 (136)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHHCCCch
Confidence            368999999999999999999999999998864           489999999999999999875

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.78  E-value=2.7e-08  Score=79.63  Aligned_cols=54  Identities=17%  Similarity=0.121  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      +++|+..|+++++.+|++..++++||.+|..+|           ++++|..+|++||+++|+|..
T Consensus       182 ~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----------~~~eA~~~l~~al~~~p~~~~  235 (291)
T 3mkr_A          182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG-----------RWEAAEGVLQEALDKDSGHPE  235 (291)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHH
Confidence            689999999999999999999999999998765           999999999999999999874

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.78  E-value=1.3e-08  Score=76.27  Aligned_cols=78  Identities=15%  Similarity=0.111  Sum_probs=60.7

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH--------------
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL--------------   66 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~--------------   66 (152)
                      .+++|+..|+++++++|++.+++++||.+|...|           ++++|+++|++|++++|++..              
T Consensus        89 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~  157 (272)
T 3u4t_A           89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG-----------NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKE  157 (272)
T ss_dssp             CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT-----------CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999998764           999999999999999998852              


Q ss_pred             -------HHHHHHHHhcCchhhHHHHHhhh
Q 031846           67 -------YQKSLEVAAKAPELHMEIHKHGL   89 (152)
Q Consensus        67 -------YrkaLe~~~kapel~~e~~~~~~   89 (152)
                             |++++++.+..++.+..+.+-..
T Consensus       158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~  187 (272)
T 3u4t_A          158 YVKADSSFVKVLELKPNIYIGYLWRARANA  187 (272)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence                   34445555555555555555443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.77  E-value=2.1e-08  Score=72.06  Aligned_cols=59  Identities=17%  Similarity=0.204  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846            3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   72 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe   72 (152)
                      ++|+..|+++++++|++..++++||.+|...|           ++++|+.+|+++++++|++......++
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~  156 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQA-----------NYAQAIELWQKVMDLNSPRINRTQLVE  156 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            55666666666666666666666666665533           666666666666666665543333333

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.76  E-value=4.8e-08  Score=71.52  Aligned_cols=53  Identities=17%  Similarity=0.265  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|+++++++|++..+++++|.+|...|           ++++|+++|+++++++|++.
T Consensus        73 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~  125 (243)
T 2q7f_A           73 LERALAFYDKALELDSSAATAYYGAGNVYVVKE-----------MYKEAKDMFEKALRAGMENG  125 (243)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHTCCSH
T ss_pred             HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHhCCCCH
Confidence            577888888888888888888888888887654           78888888888888888774

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.75  E-value=1.3e-08  Score=87.09  Aligned_cols=80  Identities=14%  Similarity=0.134  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      +++|+..|+++++++|++.++|++||.+|...           +++++|+++|++|++++|++.                
T Consensus         5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~   73 (568)
T 2vsy_A            5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGM-----------GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRH   73 (568)
T ss_dssp             ----------------CCHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence            68999999999999999999999999999975           499999999999999999985                


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHHhhhccC
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHKHGLGQQ   92 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~~~~~q~   92 (152)
                           .|++++++.+..++.+..+......+|
T Consensus        74 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  105 (568)
T 2vsy_A           74 AEAAVLLQQASDAAPEHPGIALWLGHALEDAG  105 (568)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence                 477778888888888888777655444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.74  E-value=3.5e-08  Score=80.09  Aligned_cols=78  Identities=12%  Similarity=0.148  Sum_probs=61.9

Q ss_pred             CHHHHHHHHHHHHhcC--------CCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH------
Q 031846            1 MILDAISKLEEALMVS--------PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL------   66 (152)
Q Consensus         1 mieeAIs~leeAL~id--------P~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~------   66 (152)
                      .+++|+..|+++++++        ++..+++.++|.++..+|         .++|++|++||++|++++|+|..      
T Consensus       109 ~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~---------~~~y~~A~~~~~kal~~~p~~~~~~~~~~  179 (472)
T 4g1t_A          109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCG---------GNQNERAKVCFEKALEKKPKNPEFTSGLA  179 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHC---------TTHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHc---------cccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3789999999999874        467889999999998766         46899999999999999999962      


Q ss_pred             ------------------HHHHHHHHhcCchhhHHHHHh
Q 031846           67 ------------------YQKSLEVAAKAPELHMEIHKH   87 (152)
Q Consensus        67 ------------------YrkaLe~~~kapel~~e~~~~   87 (152)
                                        |++++++.+..++++..+...
T Consensus       180 ~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~  218 (472)
T 4g1t_A          180 IASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALK  218 (472)
T ss_dssp             HHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHH
Confidence                              556666666666666555543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.74  E-value=3.1e-08  Score=68.75  Aligned_cols=79  Identities=16%  Similarity=0.130  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------   65 (152)
                      .+++|+..|+++++++|++..+++.+|.+|...|           ++++|+++|+++++++|++.               
T Consensus        23 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   91 (186)
T 3as5_A           23 RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTG-----------AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQK   91 (186)
T ss_dssp             CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Confidence            3689999999999999999999999999998754           99999999999999999885               


Q ss_pred             ------HHHHHHHHHhcCchhhHHHHHhhhc
Q 031846           66 ------LYQKSLEVAAKAPELHMEIHKHGLG   90 (152)
Q Consensus        66 ------~YrkaLe~~~kapel~~e~~~~~~~   90 (152)
                            .|+++++..+..++.+..+......
T Consensus        92 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  122 (186)
T 3as5_A           92 YDLAVPLLIKVAEANPINFNVRFRLGVALDN  122 (186)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH
Confidence                  2555555555566666655554443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.74  E-value=2.1e-08  Score=66.27  Aligned_cols=59  Identities=14%  Similarity=0.137  Sum_probs=51.3

Q ss_pred             CHHHHHHHHHHHHhcCCCC-------hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNR-------HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL   71 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~-------~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaL   71 (152)
                      .+++|+..|+++++++|++       ..++++||.+|...|           ++++|+++|+++++++|+ ......+
T Consensus        53 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~~~~~~~~-~~~~~~l  118 (131)
T 1elr_A           53 DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEE-----------KYKDAIHFYNKSLAEHRT-PDVLKKC  118 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred             cHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHhCCC-HHHHHHH
Confidence            4789999999999999988       999999999999764           999999999999999994 5444444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.74  E-value=3.7e-08  Score=74.87  Aligned_cols=52  Identities=12%  Similarity=0.018  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +++|+..|+++++++|++.+++++||.+|...           +++++|+.+|++|++++|++
T Consensus       107 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~a~~~~~~~  158 (330)
T 3hym_B          107 NEHARRYLSKATTLEKTYGPAWIAYGHSFAVE-----------SEHDQAMAAYFTAAQLMKGC  158 (330)
T ss_dssp             HHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhcccc
Confidence            56677777777777777777777777777654           37777777777777777765

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.74  E-value=1.5e-08  Score=84.84  Aligned_cols=76  Identities=21%  Similarity=0.229  Sum_probs=63.2

Q ss_pred             CHHHHHHHHHHHHh----------------cCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALM----------------VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~----------------idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|+..|++||+                ++|.+..+|+|||.+|..++           +|++|+++|++||+++|+|
T Consensus       238 ~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g-----------~~~~A~~~~~~al~~~p~~  306 (370)
T 1ihg_A          238 NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS-----------DWQGAVDSCLEALEIDPSN  306 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTCTTC
T ss_pred             CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc-----------CHHHHHHHHHHHHHhCchh
Confidence            47899999999999                89999999999999999865           9999999999999999998


Q ss_pred             H---------------------HHHHHHHHHhcCchhhHHHHHh
Q 031846           65 E---------------------LYQKSLEVAAKAPELHMEIHKH   87 (152)
Q Consensus        65 e---------------------~YrkaLe~~~kapel~~e~~~~   87 (152)
                      .                     .|++++++.+..++++.++.+-
T Consensus       307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~  350 (370)
T 1ihg_A          307 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV  350 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            5                     3566666666666666555543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.73  E-value=2e-08  Score=64.87  Aligned_cols=53  Identities=13%  Similarity=-0.023  Sum_probs=49.8

Q ss_pred             CHHHHHHHHHHHHhcCCC--ChHHHHHhHHHHHhc-ccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVSPN--RHDTLWCLGNAHTSH-AFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~idP~--~~dA~~nLGnAy~~~-g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|+..|+++++++|+  +.+++++||.+|..+ |           ++++|+++|+++++.+|++
T Consensus        55 ~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           55 RYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEG-----------KEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             CHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSS-----------CSHHHHHHHHHHGGGCCCC
T ss_pred             CHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHhhcccCC
Confidence            378999999999999999  999999999999986 6           9999999999999999976

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.73  E-value=4.7e-08  Score=76.09  Aligned_cols=79  Identities=18%  Similarity=0.246  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHhcCCC--ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH--------------
Q 031846            2 ILDAISKLEEALMVSPN--RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~--~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne--------------   65 (152)
                      +++|+..|+++++++|+  +..++++||.+|...|           ++++|+.+|+++++++|++.              
T Consensus       197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  265 (368)
T 1fch_A          197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG-----------EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN  265 (368)
T ss_dssp             HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence            68999999999999999  8999999999999764           99999999999999999985              


Q ss_pred             -------HHHHHHHHHhcCchhhHHHHHhhhcc
Q 031846           66 -------LYQKSLEVAAKAPELHMEIHKHGLGQ   91 (152)
Q Consensus        66 -------~YrkaLe~~~kapel~~e~~~~~~~q   91 (152)
                             .|++++++.+..++.+..+..-...+
T Consensus       266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  298 (368)
T 1fch_A          266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINL  298 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence                   36666666666677777666654433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.72  E-value=5.2e-08  Score=72.61  Aligned_cols=54  Identities=13%  Similarity=0.033  Sum_probs=51.1

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++++++|++.+++++||.+|...|           ++++|+.+|+++++++|++.
T Consensus        92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A           92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG-----------RDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHhCCCCh
Confidence            4789999999999999999999999999999764           99999999999999999997

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.72  E-value=4.5e-08  Score=73.33  Aligned_cols=80  Identities=10%  Similarity=-0.024  Sum_probs=59.7

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------   65 (152)
                      .+++|+..|+++++++|++.+++++||.+|...|           ++++|+++|+++++ .|++.               
T Consensus        18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~   85 (272)
T 3u4t_A           18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELA-----------KYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM   85 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTT-----------CHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH
Confidence            3789999999999999999999999999998754           88888888888888 44331               


Q ss_pred             ----------HHHHHHHHHhcCchhhHHHHHhhhccC
Q 031846           66 ----------LYQKSLEVAAKAPELHMEIHKHGLGQQ   92 (152)
Q Consensus        66 ----------~YrkaLe~~~kapel~~e~~~~~~~q~   92 (152)
                                .|++++++.+..++.+..+......+|
T Consensus        86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~  122 (272)
T 3u4t_A           86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG  122 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred             HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc
Confidence                      355666666666666666666554333

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.71  E-value=3.1e-08  Score=75.54  Aligned_cols=54  Identities=11%  Similarity=0.078  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++|+.+|++   .+++++||.+|...|           +|++|+.+|+++++++|+++
T Consensus        30 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~   86 (261)
T 3qky_A           30 KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK-----------EYLLAASEYERFIQIYQIDP   86 (261)
T ss_dssp             CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCT
T ss_pred             CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHCCCCc
Confidence            4789999999999999999   999999999999864           99999999999999999763

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.71  E-value=2.3e-08  Score=75.72  Aligned_cols=54  Identities=19%  Similarity=0.035  Sum_probs=49.6

Q ss_pred             CHHHHHHHHHHHHhcCCCCh---HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRH---DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~---dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++++.+|++.   +++++||.+|...|           ++++|+++|+++++++|+++
T Consensus        19 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~-----------~~~~A~~~~~~~l~~~P~~~   75 (225)
T 2yhc_A           19 NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA-----------DLPLAQAAIDRFIRLNPTHP   75 (225)
T ss_dssp             CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCT
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHCcCCC
Confidence            47899999999999999874   79999999999865           99999999999999999985

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.70  E-value=4.1e-08  Score=72.02  Aligned_cols=62  Identities=15%  Similarity=0.080  Sum_probs=55.7

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC------CCcHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE------PSNELYQKSLEV   73 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld------P~Ne~YrkaLe~   73 (152)
                      .+++|+..|+++++++|++.+++++||.+|..+|           ++++|+++|++|++++      |+|...+..|..
T Consensus       188 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          188 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK-----------EYASALETLDAARTKDAEVNNGSSAREIDQLYYK  255 (258)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence            3789999999999999999999999999999865           9999999999999999      888776666543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.70  E-value=9.4e-09  Score=81.58  Aligned_cols=53  Identities=15%  Similarity=0.179  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|+..|++||+++|++..++++||.+|..+|           ++++|+.+|++|++++|+|
T Consensus        53 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           53 QPEQALADCRRALELDGQSVKAHFFLGQCQLEME-----------SYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCccc
Confidence            3789999999999999999999999999999765           9999999999999999987

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.70  E-value=5.9e-08  Score=70.77  Aligned_cols=65  Identities=20%  Similarity=0.171  Sum_probs=55.1

Q ss_pred             CHHHHHHHHHHHHhcCCCCh----------------HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVSPNRH----------------DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~----------------dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|+..|+++++++|++.                +++++||.+|..+|           ++++|+++|++|++++|++
T Consensus        86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE-----------EWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTCCSG
T ss_pred             cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHcCccc
Confidence            37899999999999999887                99999999999865           9999999999999999976


Q ss_pred             --HHHHHHHHHHhc
Q 031846           65 --ELYQKSLEVAAK   76 (152)
Q Consensus        65 --e~YrkaLe~~~k   76 (152)
                        ..+.++++...+
T Consensus       155 ~~~~~~~a~~~~~~  168 (213)
T 1hh8_A          155 RHSKIDKAMECVWK  168 (213)
T ss_dssp             GGGHHHHHHHHHHT
T ss_pred             ccchHHHHHHHHHh
Confidence              345555555443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.69  E-value=8.8e-08  Score=72.67  Aligned_cols=53  Identities=19%  Similarity=0.179  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|+++++++|++.++++++|.+|...|           ++++|+.+|+++++++|++.
T Consensus       188 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~  240 (327)
T 3cv0_A          188 YDSAAANLRRAVELRPDDAQLWNKLGATLANGN-----------RPQEALDAYNRALDINPGYV  240 (327)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCH
Confidence            455555555555555555555555555555432           66666666666666666553

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.68  E-value=1.6e-08  Score=82.81  Aligned_cols=72  Identities=13%  Similarity=0.083  Sum_probs=58.1

Q ss_pred             CHHHHHHHHHHHHhcCCCCh-----------------HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846            1 MILDAISKLEEALMVSPNRH-----------------DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS   63 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~-----------------dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~   63 (152)
                      .+++|+..|++||+++|++.                 .+|+|||.+|..+|           +|++|+.+|++||+++|+
T Consensus       194 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g-----------~~~~A~~~~~~al~~~p~  262 (338)
T 2if4_A          194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK-----------RYDEAIGHCNIVLTEEEK  262 (338)
T ss_dssp             CCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT-----------CCHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCC
Confidence            36899999999999999987                 49999999999865           999999999999999999


Q ss_pred             cHH--------------HHHHHHHHhcCchhhHH
Q 031846           64 NEL--------------YQKSLEVAAKAPELHME   83 (152)
Q Consensus        64 Ne~--------------YrkaLe~~~kapel~~e   83 (152)
                      |..              |.++++.+.++.++.+.
T Consensus       263 ~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~  296 (338)
T 2if4_A          263 NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD  296 (338)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            962              55666666666655543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.68  E-value=2.9e-08  Score=72.71  Aligned_cols=54  Identities=15%  Similarity=0.257  Sum_probs=45.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++++++|++..+++++|.+|...           +++++|+++|+++++++|++.
T Consensus       140 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~  193 (243)
T 2q7f_A          140 QPKLALPYLQRAVELNENDTEARFQFGMCLANE-----------GMLDEALSQFAAVTEQDPGHA  193 (243)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------TCCHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCcccH
Confidence            367888889999988898888888888888865           488888888888888888875

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.68  E-value=4.1e-08  Score=74.96  Aligned_cols=54  Identities=11%  Similarity=0.068  Sum_probs=48.1

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++++++|++.++++++|.+|...|           ++++|+.+|+++++++|++.
T Consensus        18 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~   71 (359)
T 3ieg_A           18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG-----------KSKAALPDLTKVIALKMDFT   71 (359)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCcc
Confidence            3689999999999999999999999999998754           89999999999999999885

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.68  E-value=1.3e-07  Score=71.85  Aligned_cols=54  Identities=17%  Similarity=0.111  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++++++|++..++++||.+|...|           ++++|+++|+++++++|++.
T Consensus       140 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~al~~~~~~~  193 (330)
T 3hym_B          140 EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN-----------NSKLAERFFSQALSIAPEDP  193 (330)
T ss_dssp             CHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTCTTCH
T ss_pred             CHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHhCCCCh
Confidence            3689999999999999999999999999998754           89999999999999999985

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.67  E-value=5.3e-08  Score=70.92  Aligned_cols=50  Identities=12%  Similarity=0.110  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +|+..|+++|+++|++.+++++||.+|...|           ++++|+.+|+++++++|++
T Consensus        92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A           92 PELKRLEQELAANPDNFELACELAVQYNQVG-----------RDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTCTTT
T ss_pred             hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHhCccc
Confidence            5799999999999999999999999999765           9999999999999999975

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.67  E-value=9.6e-08  Score=75.55  Aligned_cols=80  Identities=10%  Similarity=0.063  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHhcCCCChH-HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846            2 ILDAISKLEEALMVSPNRHD-TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~d-A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------   65 (152)
                      +++|+..|+++|+++|++.+ +|.++|+++..+           +++++|..+|++|++++|.+.               
T Consensus       115 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~  183 (308)
T 2ond_A          115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA-----------EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK  183 (308)
T ss_dssp             HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH-----------HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHhccccCccHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence            45566666666666666655 566666665543           478888888888888888541               


Q ss_pred             -------HHHHHHHHHhcCchhhHHHHHhhhccC
Q 031846           66 -------LYQKSLEVAAKAPELHMEIHKHGLGQQ   92 (152)
Q Consensus        66 -------~YrkaLe~~~kapel~~e~~~~~~~q~   92 (152)
                             .|+++++..+..++++..+......+|
T Consensus       184 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  217 (308)
T 2ond_A          184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN  217 (308)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence                   466677777777888877777665544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.66  E-value=1e-07  Score=76.39  Aligned_cols=53  Identities=13%  Similarity=0.184  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|+++++++|++..++++||.+|..+|           ++++|+.+|+++++++|++.
T Consensus        76 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A           76 SKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG-----------KLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTSCCCHH
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCh
Confidence            567777777777777777777777777777644           77788888888888888765

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.65  E-value=1.5e-07  Score=71.43  Aligned_cols=79  Identities=16%  Similarity=0.231  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      +++|+..|+++++++|++..++++||.+|...|           ++++|+++|+++++++|++.                
T Consensus       154 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  222 (327)
T 3cv0_A          154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSN-----------NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP  222 (327)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence            589999999999999999999999999999764           99999999999999999985                


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHHhhhcc
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHKHGLGQ   91 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~~~~~q   91 (152)
                           .|++++++.+..++.+..+......+
T Consensus       223 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  253 (327)
T 3cv0_A          223 QEALDAYNRALDINPGYVRVMYNMAVSYSNM  253 (327)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence                 35566666666667676666654433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.65  E-value=1.1e-07  Score=65.88  Aligned_cols=65  Identities=17%  Similarity=0.109  Sum_probs=56.3

Q ss_pred             CHHHHHHHHHHHHhcC-------CCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVS-------PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV   73 (152)
Q Consensus         1 mieeAIs~leeAL~id-------P~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~   73 (152)
                      .|+.|+.-|++||+..       +...+.+.+||.+|.++|           ++++|+.+|++|++++|+|+....++..
T Consensus        20 ~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g-----------~~~~A~~~~~~al~l~P~~~~~~~n~~~   88 (104)
T 2v5f_A           20 DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-----------DLDKALLLTKKLLELDPEHQRANGNLKY   88 (104)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHhcCCCCHHHHhhHHH
Confidence            3789999999999853       457889999999999875           9999999999999999999988777765


Q ss_pred             Hhc
Q 031846           74 AAK   76 (152)
Q Consensus        74 ~~k   76 (152)
                      .++
T Consensus        89 ~~~   91 (104)
T 2v5f_A           89 FEY   91 (104)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.64  E-value=9.3e-08  Score=62.60  Aligned_cols=55  Identities=25%  Similarity=0.422  Sum_probs=50.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      .+++|+..|+++++++|++..+++++|.++...|           ++++|+.+|+++++++|++..
T Consensus        50 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~  104 (136)
T 2fo7_A           50 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG-----------DYDEAIEYYQKALELDPRSAE  104 (136)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHhCCCChH
Confidence            3689999999999999999999999999998754           999999999999999998863

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.64  E-value=5.4e-08  Score=83.82  Aligned_cols=57  Identities=11%  Similarity=0.095  Sum_probs=52.2

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ   68 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yr   68 (152)
                      .+++|+..|++||+++|++..++++||.+|..+|           ++++|+++|++|++++|++....
T Consensus        55 ~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g-----------~~~eA~~~~~~al~~~p~~~~~~  111 (477)
T 1wao_1           55 CYGYALGDATRAIELDKKYIKGYYRRAASNMALG-----------KFRAALRDYETVVKVKPHDKDAK  111 (477)
T ss_dssp             CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHSTTCTTHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHH
Confidence            4789999999999999999999999999999754           99999999999999999986433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.63  E-value=4.6e-08  Score=66.16  Aligned_cols=40  Identities=23%  Similarity=0.370  Sum_probs=34.9

Q ss_pred             cCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846           15 VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus        15 idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .||++.+++++||.+|...|           ++++|+++|++|++++|++.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~   41 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHD-----------NASRALALFEELVETDPDYV   41 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSTTCT
T ss_pred             CCccCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCcH
Confidence            58999999999999999765           99999999999999999985

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.63  E-value=6.8e-08  Score=73.66  Aligned_cols=74  Identities=16%  Similarity=0.151  Sum_probs=59.6

Q ss_pred             CHHHHHHHHHHHHhcCCC---ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 031846            1 MILDAISKLEEALMVSPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA   75 (152)
Q Consensus         1 mieeAIs~leeAL~idP~---~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~   75 (152)
                      .+++|+..|+++|+++|+   ..+++++||.+|..+|.. .......+++++|+.+|+++++++|+++.+++++.+..
T Consensus       163 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~-~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  239 (261)
T 3qky_A          163 LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQ-SVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT  239 (261)
T ss_dssp             CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhccc-chhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            378999999999999999   567999999999876421 00011247999999999999999999988888776654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.63  E-value=1e-07  Score=76.30  Aligned_cols=59  Identities=20%  Similarity=0.082  Sum_probs=51.7

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHH-HHHHHHHHHHHcCCCcHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFN-KATLYFQQAVDEEPSNELYQKS   70 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~e-kA~~~FqkAleldP~Ne~Yrka   70 (152)
                      .+++|+..|+++|+++|++.++++|||.++..+|           +++ .|.++|+++++++|+|+..+..
T Consensus       215 ~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g-----------~~~eaa~~~~~~~~~~~P~~~~~~d~  274 (291)
T 3mkr_A          215 RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG-----------KPPEVTNRYLSQLKDAHRSHPFIKEY  274 (291)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            4789999999999999999999999999999876           555 4679999999999999865443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.63  E-value=1.1e-07  Score=76.18  Aligned_cols=55  Identities=16%  Similarity=0.256  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHH
Q 031846            3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ   68 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yr   68 (152)
                      ++|+..|+++++++|++.++|++||.+|..+|           ++++|+.+|++|++++|+|....
T Consensus       312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~  366 (450)
T 2y4t_A          312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE-----------MYDEAIQDYETAQEHNENDQQIR  366 (450)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTSSSCHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHhCcchHHHH
Confidence            44444444444444444444444444444332           44555555555555555444333

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.62  E-value=7.7e-08  Score=81.97  Aligned_cols=54  Identities=20%  Similarity=0.135  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHhcCC---CChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            2 ILDAISKLEEALMVSP---NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         2 ieeAIs~leeAL~idP---~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      +++|+..|++|++++|   ++.++|++||.+|..+|           ++++|+++|++|++++|++..
T Consensus       237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~l~p~~~~  293 (474)
T 4abn_A          237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE-----------SYGEALEGFSQAAALDPAWPE  293 (474)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHH
Confidence            7899999999999999   99999999999999765           999999999999999999974

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.62  E-value=1.9e-07  Score=69.32  Aligned_cols=53  Identities=13%  Similarity=0.125  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|+++++++|++..++++||.+|...|           ++++|+.+|+++++++|++.
T Consensus       157 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~  209 (252)
T 2ho1_A          157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKER-----------EYVPARQYYDLFAQGGGQNA  209 (252)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTSCCCH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCcCcH
Confidence            466666666666666666666666666666543           66777777777777777664

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.61  E-value=1.7e-07  Score=69.64  Aligned_cols=52  Identities=15%  Similarity=0.054  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH--cCCCc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD--EEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle--ldP~N   64 (152)
                      +++|+..|+++++++|++..++++||.+|...|           ++++|+++|+++++  .+|++
T Consensus        87 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~  140 (252)
T 2ho1_A           87 PKLADEEYRKALASDSRNARVLNNYGGFLYEQK-----------RYEEAYQRLLEASQDTLYPER  140 (252)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHTTCTTCTTH
T ss_pred             HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHhCccCccc
Confidence            466666666666666666666666666666543           77777777777777  66655

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.61  E-value=9.3e-08  Score=85.46  Aligned_cols=80  Identities=9%  Similarity=-0.044  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHH--------hcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH--------
Q 031846            2 ILDAISKLEEAL--------MVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------   65 (152)
Q Consensus         2 ieeAIs~leeAL--------~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne--------   65 (152)
                      +++|+..|++++        +++|++.++++++|.+|..+|           ++++|+++|++|++++|+|.        
T Consensus       407 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~a~~~lg~  475 (681)
T 2pzi_A          407 PVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLG-----------DVAKATRKLDDLAERVGWRWRLVWYRAV  475 (681)
T ss_dssp             HHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcC-----------CHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence            689999999999        999999999999999999754           99999999999999999994        


Q ss_pred             -------------HHHHHHHHHhcCchhhHHHHHhhhccC
Q 031846           66 -------------LYQKSLEVAAKAPELHMEIHKHGLGQQ   92 (152)
Q Consensus        66 -------------~YrkaLe~~~kapel~~e~~~~~~~q~   92 (152)
                                   .|++++++.+..++.+..+..-...+|
T Consensus       476 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g  515 (681)
T 2pzi_A          476 AELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAG  515 (681)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence                         478888888888888888888766555

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.60  E-value=1.8e-07  Score=67.27  Aligned_cols=55  Identities=20%  Similarity=0.168  Sum_probs=50.1

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      .+++|+..|+++++++|++.+++++||.+|...|           ++++|+++|+++++++|++..
T Consensus        23 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~   77 (225)
T 2vq2_A           23 DYRQATASIEDALKSDPKNELAWLVRAEIYQYLK-----------VNDKAQESFRQALSIKPDSAE   77 (225)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHhCCCChH
Confidence            4789999999999999999999999999998754           999999999999999998863

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.58  E-value=3e-07  Score=66.05  Aligned_cols=52  Identities=17%  Similarity=0.190  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhc-ccCCCChHHHHHhHHHHHHHHHHHHH--cCCCc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSH-AFLTPDQDEAKEYFNKATLYFQQAVD--EEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~-g~l~pd~~eA~~~~ekA~~~FqkAle--ldP~N   64 (152)
                      +++|+..|+++++++|++..+++++|.+|... |           ++++|+.+|+++++  .+|++
T Consensus        58 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~  112 (225)
T 2vq2_A           58 NDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN-----------RPAESMAYFDKALADPTYPTP  112 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHHTSTTCSCH
T ss_pred             hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC-----------cHHHHHHHHHHHHcCcCCcch
Confidence            57888888888888888888888888888765 4           77888888888887  45544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.58  E-value=1e-07  Score=75.60  Aligned_cols=57  Identities=9%  Similarity=0.015  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc--HHHHHH
Q 031846            3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN--ELYQKS   70 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N--e~Yrka   70 (152)
                      ++|+..|+++++++|++.+++++||.+|...|           ++++|+++|+++++++|++  ...+..
T Consensus       202 ~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g-----------~~~~A~~~l~~~l~~~p~~~~~~a~~~  260 (287)
T 3qou_A          202 TPEIQQLQQQVAENPEDAALATQLALQLHQVG-----------RNEEALELLFGHLRXDLTAADGQTRXT  260 (287)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred             CccHHHHHHHHhcCCccHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHhcccccccchHHHH
Confidence            56899999999999999999999999999765           9999999999999999998  444433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.57  E-value=2.6e-07  Score=75.60  Aligned_cols=79  Identities=15%  Similarity=0.147  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      +++|+..|+++++++|++.++++++|.+|...|           ++++|+++|+++++++|++.                
T Consensus       292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~  360 (537)
T 3fp2_A          292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ-----------DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKF  360 (537)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            578888888888888888888888888887654           88888888888888888763                


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHHhhhcc
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHKHGLGQ   91 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~~~~~q   91 (152)
                           .|+++++..+..++++..+......+
T Consensus       361 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  391 (537)
T 3fp2_A          361 TESEAFFNETKLKFPTLPEVPTFFAEILTDR  391 (537)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence                 35566666666666666666555433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.56  E-value=8.7e-08  Score=78.38  Aligned_cols=54  Identities=17%  Similarity=0.189  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      +++|+..|+++|+++|++.+++++||.+|..+|           ++++|+++|+++++++|+|..
T Consensus        41 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~   94 (537)
T 3fp2_A           41 FNEAIKYYQYAIELDPNEPVFYSNISACYISTG-----------DLEKVIEFTTKALEIKPDHSK   94 (537)
T ss_dssp             CC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCchHH
Confidence            679999999999999999999999999999754           999999999999999999963

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.56  E-value=7.4e-08  Score=76.03  Aligned_cols=73  Identities=10%  Similarity=0.010  Sum_probs=56.9

Q ss_pred             CHHHHHHHHHHHHhcCCCC------hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH--------
Q 031846            1 MILDAISKLEEALMVSPNR------HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL--------   66 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~------~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~--------   66 (152)
                      .+++|+..|++||+++|+.      .+++.+||.+|..+|           +|++|+++|++|++++|++..        
T Consensus       133 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~  201 (292)
T 1qqe_A          133 DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG-----------QYIEASDIYSKLIKSSMGNRLSQWSLKDY  201 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            3789999999999999875      578999999999865           999999999999999998631        


Q ss_pred             -------------HHHHHHHHhcCchhhHHH
Q 031846           67 -------------YQKSLEVAAKAPELHMEI   84 (152)
Q Consensus        67 -------------YrkaLe~~~kapel~~e~   84 (152)
                                   |..+++.+.++.++.+.+
T Consensus       202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  232 (292)
T 1qqe_A          202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNF  232 (292)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence                         445556666666665554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.55  E-value=2.1e-07  Score=77.53  Aligned_cols=61  Identities=16%  Similarity=0.160  Sum_probs=55.6

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   72 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe   72 (152)
                      .+++|+..|+++++++|++..+|+.||++|...|           ++++|+++|+++++++|+|......|.
T Consensus       531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~l~  591 (597)
T 2xpi_A          531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK-----------IPGLAITHLHESLAISPNEIMASDLLK  591 (597)
T ss_dssp             CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            4789999999999999999999999999999865           999999999999999999987666654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.53  E-value=1.6e-07  Score=74.04  Aligned_cols=54  Identities=13%  Similarity=0.056  Sum_probs=44.4

Q ss_pred             CHHHHHHHHHHHHhcCCCChH-------HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHD-------TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~d-------A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++++++|++..       +|+++|.+|..+|           ++++|+.+|++|++++|++.
T Consensus       173 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~l~p~~~  233 (292)
T 1qqe_A          173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT-----------DAVAAARTLQEGQSEDPNFA  233 (292)
T ss_dssp             CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT-----------CHHHHHHHHHGGGCC-----
T ss_pred             CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCC
Confidence            478999999999999998765       6899999999764           99999999999999999864

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.52  E-value=2.7e-07  Score=72.94  Aligned_cols=53  Identities=11%  Similarity=0.112  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHh-cCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALM-VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~-idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|++||+ ++|++..+|.++|.++..+|           ++++|.++|++|++++|++.
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~al~~~p~~~  133 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRM-----------KYEKVHSIYNRLLAIEDIDP  133 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTSSSSCT
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhccccCc
Confidence            4899999999999 79999999999999998764           99999999999999999874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.46  E-value=3.9e-07  Score=73.65  Aligned_cols=53  Identities=19%  Similarity=0.053  Sum_probs=45.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++|+++| +..++++||.+|...|           ++++|+.+|+++++++|++.
T Consensus        21 ~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~   73 (514)
T 2gw1_A           21 KYDDAIKYYNWALELKE-DPVFYSNLSACYVSVG-----------DLKKVVEMSTKALELKPDYS   73 (514)
T ss_dssp             CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHCSCCH
T ss_pred             cHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHh-----------hHHHHHHHHHHHhccChHHH
Confidence            36889999999999998 5889999999998754           89999999999999999885

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.45  E-value=5.5e-07  Score=72.76  Aligned_cols=61  Identities=16%  Similarity=0.234  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV   73 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~   73 (152)
                      +++|+..|+++++++|++.+++++||.+|...|           ++++|+++|++|++++|+++....++..
T Consensus       431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~  491 (514)
T 2gw1_A          431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE-----------DIDEAITLFEESADLARTMEEKLQAITF  491 (514)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            689999999999999999999999999999765           9999999999999999999876665533

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.44  E-value=8.2e-07  Score=73.99  Aligned_cols=52  Identities=10%  Similarity=0.063  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +++|+..|+++++++|++.++|++||.+|...|           ++++|+++|+++++++|++
T Consensus       389 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~  440 (597)
T 2xpi_A          389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG-----------EHDQAISAYTTAARLFQGT  440 (597)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCccc
Confidence            567777777777777777777777777777643           7777777777777777765

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.39  E-value=7.3e-07  Score=67.41  Aligned_cols=67  Identities=12%  Similarity=0.128  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChH---HHHHhHHHHHhcccC-------CCChHHHHHhHHHHHHHHHHHHHcCCCcHHH
Q 031846            1 MILDAISKLEEALMVSPNRHD---TLWCLGNAHTSHAFL-------TPDQDEAKEYFNKATLYFQQAVDEEPSNELY   67 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~d---A~~nLGnAy~~~g~l-------~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Y   67 (152)
                      .+++|+..|+++++++|++..   |+|++|.+|...+..       ..+.....+++++|+.+|+++++.+|++...
T Consensus        56 ~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a  132 (225)
T 2yhc_A           56 DLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT  132 (225)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTH
T ss_pred             CHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            378999999999999999875   899999999753200       0000011369999999999999999998643

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.32  E-value=2.3e-06  Score=66.96  Aligned_cols=70  Identities=23%  Similarity=0.197  Sum_probs=55.3

Q ss_pred             CHHHHHHHHHHHHhcCCCC------hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHH---HcCCCcH------
Q 031846            1 MILDAISKLEEALMVSPNR------HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAV---DEEPSNE------   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~------~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAl---eldP~Ne------   65 (152)
                      .+++|+..|++||++.++.      ..++++||++|..+|           +|++|+++|++|+   +..|++.      
T Consensus       130 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~-----------~~~~A~~~~~kal~~~~~~~~~~~~~~~~  198 (293)
T 2qfc_A          130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG-----------YLKKGIDLFEQILKQLEALHDNEEFDVKV  198 (293)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHhcCccccchHHH
Confidence            3689999999999887665      679999999999864           9999999999999   6677653      


Q ss_pred             ------------HHHHHHHHHhcCchhh
Q 031846           66 ------------LYQKSLEVAAKAPELH   81 (152)
Q Consensus        66 ------------~YrkaLe~~~kapel~   81 (152)
                                  .|.+|++.+.++.++.
T Consensus       199 ~~nlg~~y~~~~~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          199 RYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence                        2566666666665554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.28  E-value=1.5e-06  Score=55.03  Aligned_cols=40  Identities=30%  Similarity=0.596  Sum_probs=33.3

Q ss_pred             cCC-CChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846           15 VSP-NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus        15 idP-~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +|| .+.+++++||.+|...           +++++|+.+|++|++++|++.
T Consensus         3 ~~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~a~~~~~~~~   43 (91)
T 1na3_A            3 MDPGNSAEAWYNLGNAYYKQ-----------GDYDEAIEYYQKALELDPNNA   43 (91)
T ss_dssp             ---CHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHCTTCH
T ss_pred             CcccccHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHhcCCCCH
Confidence            344 4678999999999875           499999999999999999985

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.27  E-value=7.6e-07  Score=65.65  Aligned_cols=72  Identities=17%  Similarity=0.196  Sum_probs=57.2

Q ss_pred             CHHHHHHHHHHHHhc--------CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc--------CCCc
Q 031846            1 MILDAISKLEEALMV--------SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE--------EPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~i--------dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel--------dP~N   64 (152)
                      .+++|+..|++++++        +|....++++||.+|..+|           ++++|+++|++|+++        +|.+
T Consensus       100 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~  168 (283)
T 3edt_B          100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG-----------KAEEVEYYYRRALEIYATRLGPDDPNV  168 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            378999999999998        6888999999999999865           999999999999999        5544


Q ss_pred             H--------------HHHHHHHHHhcCchhhHH
Q 031846           65 E--------------LYQKSLEVAAKAPELHME   83 (152)
Q Consensus        65 e--------------~YrkaLe~~~kapel~~e   83 (152)
                      .              .|.++++...++.++..+
T Consensus       169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3              255566666666655433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.19  E-value=4.9e-06  Score=65.03  Aligned_cols=48  Identities=19%  Similarity=0.158  Sum_probs=41.8

Q ss_pred             CHHHHHHHHHHHHhcCCCChH------HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHD------TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD   59 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~d------A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle   59 (152)
                      .+++|+..|++||++.++..+      ++.+||++|..+|           +|++|+++|++|++
T Consensus       130 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-----------~~~~A~~~~~~al~  183 (293)
T 3u3w_A          130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG-----------YLKKGIDLFEQILK  183 (293)
T ss_dssp             CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHH
Confidence            368999999999998776555      7999999999865           99999999999995

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.18  E-value=1.5e-06  Score=64.13  Aligned_cols=49  Identities=20%  Similarity=0.204  Sum_probs=43.8

Q ss_pred             CHHHHHHHHHHHHhc--------CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846            1 MILDAISKLEEALMV--------SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE   60 (152)
Q Consensus         1 mieeAIs~leeAL~i--------dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel   60 (152)
                      .+++|+..|++++++        +|....++++||.+|..+|           ++++|+++|++|+++
T Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~  114 (283)
T 3edt_B           58 KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG-----------KYKEAEPLCKRALEI  114 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHH
Confidence            378999999999988        5778889999999999865           899999999999998

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.16  E-value=2.8e-06  Score=67.40  Aligned_cols=49  Identities=18%  Similarity=0.159  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHHHHhcCCCCh----HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846            1 MILDAISKLEEALMVSPNRH----DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE   60 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~----dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel   60 (152)
                      .+++|+..|+++|+++|++.    .++++||.+|...|           ++++|+++|++|+++
T Consensus        63 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~  115 (411)
T 4a1s_A           63 DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG-----------DYNKAMQYHKHDLTL  115 (411)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHH
Confidence            47899999999999999987    58999999999754           999999999999988

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.15  E-value=3.5e-06  Score=62.98  Aligned_cols=49  Identities=22%  Similarity=0.155  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHHhcCCCC----hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846            1 MILDAISKLEEALMVSPNR----HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE   60 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~----~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel   60 (152)
                      .+++|+..|+++++++|++    ..++++||.+|...|           ++++|+++|++|+++
T Consensus        20 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~   72 (338)
T 3ro2_A           20 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH-----------DYAKALEYHHHDLTL   72 (338)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Confidence            4789999999999999998    478999999999765           999999999999888

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.14  E-value=2.6e-06  Score=55.65  Aligned_cols=36  Identities=17%  Similarity=0.314  Sum_probs=32.8

Q ss_pred             ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846           19 RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus        19 ~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +.++++++|+++...|           +|++|+++|++|++++|++.
T Consensus         3 ~~~~~~~~g~~~~~~~-----------~~~~A~~~~~~al~~~p~~~   38 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQG-----------LYREAVHCYDQLITAQPQNP   38 (111)
T ss_dssp             HHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCH
Confidence            4688999999999764           99999999999999999985

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.13  E-value=5.5e-07  Score=60.68  Aligned_cols=52  Identities=21%  Similarity=0.212  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHhcCCCCh------HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846            1 MILDAISKLEEALMVSPNRH------DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS   63 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~------dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~   63 (152)
                      .+++|+..|++++++.++..      .++++||.+|..+|           ++++|+++|++|+++.++
T Consensus        24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~a~~~~~~   81 (164)
T 3ro3_A           24 NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG-----------EFETASEYYKKTLLLARQ   81 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHH
Confidence            37899999999999987755      48999999999765           999999999999988664

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.12  E-value=3.1e-06  Score=67.89  Aligned_cols=70  Identities=26%  Similarity=0.360  Sum_probs=54.9

Q ss_pred             CHHHHHHHHHHHHhcCCCCh------HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH-----cC-CCcH---
Q 031846            1 MILDAISKLEEALMVSPNRH------DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD-----EE-PSNE---   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~------dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle-----ld-P~Ne---   65 (152)
                      .+++|+..|++||++.++..      .++++||.+|..+|           ++++|+++|++|++     .+ |.+.   
T Consensus       199 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~  267 (383)
T 3ulq_A          199 QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS-----------QYEDAIPYFKRAIAVFEESNILPSLPQAY  267 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence            37899999999999977665      49999999999865           99999999999999     45 5442   


Q ss_pred             -----------HHHHHHHHHhcCchhh
Q 031846           66 -----------LYQKSLEVAAKAPELH   81 (152)
Q Consensus        66 -----------~YrkaLe~~~kapel~   81 (152)
                                 .|.++++...++.++.
T Consensus       268 ~~l~~~~~~~g~~~~A~~~~~~al~~~  294 (383)
T 3ulq_A          268 FLITQIHYKLGKIDKAHEYHSKGMAYS  294 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence                       2555666666665554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.11  E-value=5e-06  Score=62.73  Aligned_cols=64  Identities=23%  Similarity=0.280  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHhcC-C-CChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhc
Q 031846            2 ILDAISKLEEALMVS-P-NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAK   76 (152)
Q Consensus         2 ieeAIs~leeAL~id-P-~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~k   76 (152)
                      +.++|..|++.++.+ | ..-+.+|.|+.+++++|           +|++|..|++..|+++|+|...+...++.++
T Consensus        54 ~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg-----------~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~  119 (126)
T 1nzn_A           54 IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK-----------EYEKALKYVRGLLQTEPQNNQAKELERLIDK  119 (126)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            467999999999988 6 68899999999999975           9999999999999999999988877776654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.11  E-value=4.7e-06  Score=64.99  Aligned_cols=50  Identities=22%  Similarity=0.152  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHHHHhcCCCC----hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846            1 MILDAISKLEEALMVSPNR----HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE   61 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~----~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld   61 (152)
                      .+++|+..|+++|+++|++    ..++++||.+|...|           ++++|+.+|++|+++.
T Consensus        24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~   77 (406)
T 3sf4_A           24 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH-----------DYAKALEYHHHDLTLA   77 (406)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHH
Confidence            3789999999999999998    468999999999765           9999999999998883

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.09  E-value=8.9e-07  Score=69.30  Aligned_cols=75  Identities=9%  Similarity=0.005  Sum_probs=57.2

Q ss_pred             CHHHHHHHHHHHHh-------cCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH--------
Q 031846            1 MILDAISKLEEALM-------VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------   65 (152)
Q Consensus         1 mieeAIs~leeAL~-------idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne--------   65 (152)
                      .+++|+..|++||+       .++....+++|||.+|..+|           +|++|+++|++|+++.+++.        
T Consensus       170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~-----------~y~~A~~~~~~al~~~~~~~~~~~~~~~  238 (293)
T 3u3w_A          170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-----------RYEESLYQVNKAIEISCRINSMALIGQL  238 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence            37899999999994       33445568999999999865           99999999999999987541        


Q ss_pred             -------------HHHHHHHHHhcCchhhHHHHH
Q 031846           66 -------------LYQKSLEVAAKAPELHMEIHK   86 (152)
Q Consensus        66 -------------~YrkaLe~~~kapel~~e~~~   86 (152)
                                   .|.++++...+|.++...+..
T Consensus       239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~  272 (293)
T 3u3w_A          239 YYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM  272 (293)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence                         146666666666666655444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.08  E-value=5.4e-06  Score=73.70  Aligned_cols=80  Identities=11%  Similarity=0.135  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      .+||+..++++|++||++..||++.|.++..++. ..+.++....+++|+++|++|++++|+|.                
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~-~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLET-EKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhccc-ccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence            4789999999999999999999999999998752 11223333458888888888888888885                


Q ss_pred             HHHHHHHHHhcCchhhH
Q 031846           66 LYQKSLEVAAKAPELHM   82 (152)
Q Consensus        66 ~YrkaLe~~~kapel~~   82 (152)
                      .|.++++...++.++++
T Consensus       124 ~~~~el~~~~k~l~~d~  140 (567)
T 1dce_A          124 NWARELELCARFLEADE  140 (567)
T ss_dssp             CHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHhhcc
Confidence            23566666666666543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.08  E-value=1.9e-06  Score=67.34  Aligned_cols=52  Identities=10%  Similarity=0.120  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHHHH---hcCCCCh----HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846            1 MILDAISKLEEAL---MVSPNRH----DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS   63 (152)
Q Consensus         1 mieeAIs~leeAL---~idP~~~----dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~   63 (152)
                      .+++|+..|++||   +..|++.    .+++|||.+|..+|           +|++|+++|++|+++.++
T Consensus       170 ~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~-----------~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-----------RYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh-----------hHHHHHHHHHHHHHHHHh
Confidence            3789999999999   5566643    69999999999865           999999999999998764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.08  E-value=9.5e-06  Score=72.12  Aligned_cols=73  Identities=11%  Similarity=0.044  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------H
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------L   66 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------~   66 (152)
                      +++|+..++++|++||++..||++.|.++..++.         .++++|+++|++++++||.|-               .
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~---------~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~  159 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE---------PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA  159 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS---------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc---------ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCC
Confidence            7899999999999999999999999999987652         267999999999999999985               2


Q ss_pred             HHHHHHHHhcCchhhHH
Q 031846           67 YQKSLEVAAKAPELHME   83 (152)
Q Consensus        67 YrkaLe~~~kapel~~e   83 (152)
                      |.+.++.+.++.++++.
T Consensus       160 ~~~el~~~~~~I~~~p~  176 (567)
T 1dce_A          160 PAEELAFTDSLITRNFS  176 (567)
T ss_dssp             HHHHHHHHHTTTTTTCC
T ss_pred             hHHHHHHHHHHHHHCCC
Confidence            56677778888877654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.08  E-value=1.6e-05  Score=67.09  Aligned_cols=79  Identities=10%  Similarity=0.044  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHhcCCCCh-HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846            2 ILDAISKLEEALMVSPNRH-DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~-dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------   65 (152)
                      +++|+..|+++|+++|+++ .+|.++|+.+..+           +++++|..+|++|++..|.+.               
T Consensus       337 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~  405 (530)
T 2ooe_A          337 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA-----------EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK  405 (530)
T ss_dssp             HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCccccCchHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC
Confidence            4556666666666666653 4555566655542           467777777777777766531               


Q ss_pred             -------HHHHHHHHHhcCchhhHHHHHhhhcc
Q 031846           66 -------LYQKSLEVAAKAPELHMEIHKHGLGQ   91 (152)
Q Consensus        66 -------~YrkaLe~~~kapel~~e~~~~~~~q   91 (152)
                             .|+++++..+..++++..+......+
T Consensus       406 ~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~  438 (530)
T 2ooe_A          406 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL  438 (530)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred             ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC
Confidence                   35556666666677666666655443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.08  E-value=3.5e-06  Score=64.16  Aligned_cols=76  Identities=16%  Similarity=0.144  Sum_probs=55.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHh----cccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH------HH---
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTS----HAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE------LY---   67 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~----~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne------~Y---   67 (152)
                      .+++|+..|+++++++  +.+++++||.+|..    .+           ++++|+++|++|++++|...      .|   
T Consensus       165 ~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~-----------~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g  231 (273)
T 1ouv_A          165 DLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATK-----------NFKEALARYSKACELENGGGCFNLGAMQYNG  231 (273)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCc-----------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence            3688999999999874  57899999999988    54           88999999999999887442      22   


Q ss_pred             -------HHHHHHHhcCchhhHHHHHhhh
Q 031846           68 -------QKSLEVAAKAPELHMEIHKHGL   89 (152)
Q Consensus        68 -------rkaLe~~~kapel~~e~~~~~~   89 (152)
                             .++++...++.++.++-....+
T Consensus       232 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~l  260 (273)
T 1ouv_A          232 EGVTRNEKQAIENFKKGCKLGAKGACDIL  260 (273)
T ss_dssp             SSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence                   3466777776666655544433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.06  E-value=1.3e-06  Score=69.39  Aligned_cols=52  Identities=13%  Similarity=0.081  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHhcCCCC------hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPNR------HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~------~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +++|+..|++||++.|+.      ..++.+||.+|..+|           +|++|+++|++|+++.|++
T Consensus       131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ-----------KFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHc
Confidence            678888888888887764      577888888888754           8888888888888887654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.05  E-value=1e-05  Score=67.58  Aligned_cols=58  Identities=19%  Similarity=0.182  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHhcC--CC-ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031846            2 ILDAISKLEEALMVS--PN-RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL   71 (152)
Q Consensus         2 ieeAIs~leeAL~id--P~-~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaL   71 (152)
                      +++|+..|++++.-+  |. ..+++|++|.++..+|           +.++|..+|+++++++|+ +....+|
T Consensus       187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG-----------r~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG-----------NESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            445555555554322  33 3445555555555433           555555555555555554 4444444

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.04  E-value=1.6e-06  Score=65.19  Aligned_cols=52  Identities=15%  Similarity=0.172  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHHhc--------CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846            1 MILDAISKLEEALMV--------SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS   63 (152)
Q Consensus         1 mieeAIs~leeAL~i--------dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~   63 (152)
                      .+++|+..|++++++        +|....++++||.+|..+|           ++++|+++|++++++.|+
T Consensus       168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~  227 (311)
T 3nf1_A          168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG-----------KFKQAETLYKEILTRAHE  227 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHH
Confidence            378999999999999        8888999999999999754           999999999999987554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.03  E-value=2e-06  Score=69.07  Aligned_cols=53  Identities=13%  Similarity=0.026  Sum_probs=45.4

Q ss_pred             CHHHHHHHHHHHHhc------CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMV------SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~i------dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|+..|++|+++      ++...+++++||.+|..+|           ++++|+++|++|+++.+++
T Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~~~~~~  176 (383)
T 3ulq_A          118 EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK-----------QTYFSMDYARQAYEIYKEH  176 (383)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHhC
Confidence            378999999999998      4446789999999999865           9999999999999986643

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.99  E-value=1.6e-06  Score=58.37  Aligned_cols=51  Identities=18%  Similarity=0.199  Sum_probs=44.1

Q ss_pred             CHHHHHHHHHHHHhcCCCC------hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846            1 MILDAISKLEEALMVSPNR------HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP   62 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~------~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP   62 (152)
                      .+++|+..|++++++.++.      ..++++||.+|..+|           ++++|+++|++|+++.+
T Consensus        64 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           64 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ-----------DYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHH
Confidence            3789999999999987765      678999999999764           99999999999998854

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.99  E-value=8.8e-06  Score=69.38  Aligned_cols=57  Identities=18%  Similarity=0.137  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHhcCCC--ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPN--RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~--~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      ..+|...+++||+|||+  +..||.-||..|...    |  .-.-++.++|.++|+|||+++|++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~v----P--p~~gGd~ekA~~~ferAL~LnP~~  237 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAA----P--ESFGGGMEKAHTAFEHLTRYCSAH  237 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHS----C--TTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhC----C--CccCCCHHHHHHHHHHHHHhCCCC
Confidence            46899999999999999  566999999999874    1  000159999999999999999975

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.95  E-value=1.6e-05  Score=69.21  Aligned_cols=57  Identities=9%  Similarity=0.030  Sum_probs=50.4

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQK   69 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yrk   69 (152)
                      .+++|+..+++||.+||+ ..+|..||.++...|           ++++|++.|++|+.++|..+.|.=
T Consensus       292 d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G-----------~~~eA~e~~~~AlrL~P~~~t~~~  348 (372)
T 3ly7_A          292 KTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKG-----------MNREAADAYLTAFNLRPGANTLYW  348 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSCSHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCcChHHH
Confidence            368999999999999975 788899999998765           999999999999999999887653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.95  E-value=1.5e-05  Score=56.92  Aligned_cols=49  Identities=12%  Similarity=0.115  Sum_probs=43.6

Q ss_pred             CHHHHHHHHHHHHh------cCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846            1 MILDAISKLEEALM------VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE   60 (152)
Q Consensus         1 mieeAIs~leeAL~------idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel   60 (152)
                      .+++|+..|+++++      .+|....++++||.+|...|           ++++|+++|++|+++
T Consensus        41 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           41 RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG-----------NWDAARRCFLEEREL   95 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Confidence            36899999999999      66777889999999999765           999999999999998

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.92  E-value=2.1e-05  Score=66.43  Aligned_cols=52  Identities=12%  Similarity=0.126  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHh-cCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            3 LDAISKLEEALM-VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         3 eeAIs~leeAL~-idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      ++|+..|++||+ ++|++..+|+++|.++...|           ++++|..+|++|++++|++.
T Consensus       303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~  355 (530)
T 2ooe_A          303 DEAANIYERAISTLLKKNMLLYFAYADYEESRM-----------KYEKVHSIYNRLLAIEDIDP  355 (530)
T ss_dssp             HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHSSSSCH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHhCccccCc
Confidence            489999999997 89999999999999998764           99999999999999999884

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.90  E-value=7.2e-06  Score=63.94  Aligned_cols=52  Identities=23%  Similarity=0.261  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHhcCCCChH------HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPNRHD------TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~d------A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +++|+..|++++++.|+..+      ++++||.+|...|           ++++|+.+|++|+++.|++
T Consensus       203 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~  260 (406)
T 3sf4_A          203 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG-----------EFETASEYYKKTLLLARQL  260 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHHHhC
Confidence            67899999999988887766      8999999988754           8888888888888877654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.90  E-value=2.4e-05  Score=59.13  Aligned_cols=52  Identities=27%  Similarity=0.197  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHhcCC--CChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846            2 ILDAISKLEEALMVSP--NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE   60 (152)
Q Consensus         2 ieeAIs~leeAL~idP--~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel   60 (152)
                      +++|+..|++|++++|  ++.+|+++||.+|..-.-       ...++++|+.+|++|+++
T Consensus       105 ~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g-------~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          105 VAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVH-------GPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSS-------SSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCC-------CCCCHHHHHHHHHHHHHc
Confidence            3455555555555555  235555555555543100       012555555555555555

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.89  E-value=1.8e-05  Score=59.36  Aligned_cols=50  Identities=16%  Similarity=0.097  Sum_probs=44.4

Q ss_pred             CHHHHHHHHHHHHhc--------CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846            1 MILDAISKLEEALMV--------SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE   61 (152)
Q Consensus         1 mieeAIs~leeAL~i--------dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld   61 (152)
                      .+++|+..|++++++        +|....++++||.+|...|           ++++|+.+|++|+++-
T Consensus        42 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~   99 (311)
T 3nf1_A           42 RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN-----------KYKDAANLLNDALAIR   99 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHH
Confidence            378999999999995        7888999999999999765           8999999999999883

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.89  E-value=3.7e-05  Score=58.39  Aligned_cols=47  Identities=19%  Similarity=0.218  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHh----cccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTS----HAFLTPDQDEAKEYFNKATLYFQQAVDEE   61 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~----~g~l~pd~~eA~~~~ekA~~~FqkAleld   61 (152)
                      +++|+..|+++++  |++.+++++||.+|..    .           +++++|+++|++|++++
T Consensus        22 ~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~-----------~~~~~A~~~~~~a~~~~   72 (273)
T 1ouv_A           22 FTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVE-----------KNLKKAASFYAKACDLN   72 (273)
T ss_dssp             HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSC-----------CCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcC-----------CCHHHHHHHHHHHHHCC
Confidence            6788888888887  7778888888888876    4           37888888888888876

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.87  E-value=4.5e-06  Score=62.44  Aligned_cols=51  Identities=18%  Similarity=0.214  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHhcCCCC------hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846            2 ILDAISKLEEALMVSPNR------HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS   63 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~------~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~   63 (152)
                      +++|+..|++++++.++.      ..++++||.+|..+|           ++++|+.+|++|+++.|+
T Consensus       239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~~~  295 (338)
T 3ro2_A          239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ-----------DYEKAIDYHLKHLAIAQE  295 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHh
Confidence            577888888888777666      667778888877654           778888888888777654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.86  E-value=1.9e-05  Score=63.54  Aligned_cols=52  Identities=15%  Similarity=0.100  Sum_probs=42.6

Q ss_pred             CHHHHHHHHHHHHh-----cCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846            1 MILDAISKLEEALM-----VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS   63 (152)
Q Consensus         1 mieeAIs~leeAL~-----idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~   63 (152)
                      .+++|+..|++|++     .+|....++++||.+|..+|           ++++|+++|++|+++.++
T Consensus       237 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG-----------QTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCCT
T ss_pred             CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHH
Confidence            36788888888888     78888888888888888754           888888888888888553

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.85  E-value=6.4e-06  Score=66.29  Aligned_cols=52  Identities=15%  Similarity=0.029  Sum_probs=44.4

Q ss_pred             CHHHHHHHHHHHHhcC------CCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846            1 MILDAISKLEEALMVS------PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS   63 (152)
Q Consensus         1 mieeAIs~leeAL~id------P~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~   63 (152)
                      .+++|+..|++|+++-      +....++++||.+|..+|           ++++|+.+|++|+++.+.
T Consensus       116 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~-----------~~~~A~~~~~~al~~~~~  173 (378)
T 3q15_A          116 EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK-----------QTHVSMYHILQALDIYQN  173 (378)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC-----------CcHHHHHHHHHHHHHHHh
Confidence            3789999999999873      346779999999999865           999999999999998664

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.85  E-value=3.9e-05  Score=58.68  Aligned_cols=65  Identities=12%  Similarity=0.118  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHhcCC-CChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcC
Q 031846            2 ILDAISKLEEALMVSP-NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA   77 (152)
Q Consensus         2 ieeAIs~leeAL~idP-~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~ka   77 (152)
                      +.++|..|++.++.+| ..-|.+|.|+.+++++|           +|++|..|-++.|+++|+|...+...++.++.
T Consensus        59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklg-----------dY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~k  124 (134)
T 3o48_A           59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-----------EYSMAKRYVDTLFEHERNNKQVGALKSMVEDK  124 (134)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            4689999999999999 56899999999999875           99999999999999999999888777776554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.82  E-value=6.9e-06  Score=58.69  Aligned_cols=51  Identities=8%  Similarity=-0.025  Sum_probs=42.5

Q ss_pred             CHHHHHHHHHHHHhc---CC----CChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846            1 MILDAISKLEEALMV---SP----NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP   62 (152)
Q Consensus         1 mieeAIs~leeAL~i---dP----~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP   62 (152)
                      .+++|+..|++++++   .+    ....++++||.+|..+|           ++++|+.+|++|+++.+
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG-----------DLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHH
Confidence            368999999999998   44    34577999999999754           99999999999997743

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.82  E-value=1.1e-05  Score=63.86  Aligned_cols=53  Identities=9%  Similarity=0.011  Sum_probs=45.5

Q ss_pred             CHHHHHHHHHHHHhcCCCCh------HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRH------DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~------dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++|++.|+..      .++.++|.++..+|           ++++|+.+|++++ ++|++.
T Consensus       170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g-----------~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA-----------DYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHT-TSTTST
T ss_pred             CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHh-CCCCCC
Confidence            47899999999999987654      47888899988654           9999999999999 999764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.81  E-value=2.4e-05  Score=65.13  Aligned_cols=57  Identities=9%  Similarity=-0.031  Sum_probs=48.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHH----HhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAH----TSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy----~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..++++|.+||++..+|++.|.++    ..++-        ..++++++++++++++++|.|.
T Consensus        84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~--------~~~~~~EL~~~~~~l~~~pkny  144 (306)
T 3dra_A           84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN--------DFDPYREFDILEAMLSSDPKNH  144 (306)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT--------CCCTHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc--------cCCHHHHHHHHHHHHHhCCCCH
Confidence            378999999999999999999999999999    43210        1478899999999999999996

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.81  E-value=7.1e-05  Score=57.86  Aligned_cols=64  Identities=13%  Similarity=0.122  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHhcCC-CChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhc
Q 031846            2 ILDAISKLEEALMVSP-NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAK   76 (152)
Q Consensus         2 ieeAIs~leeAL~idP-~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~k   76 (152)
                      +.++|..|++.++.+| ..-+.+|.|+.+++++|           +|++|..|.+..|+++|+|...+...++.++
T Consensus        58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~-----------~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~  122 (144)
T 1y8m_A           58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-----------EYSMAKRYVDTLFEHERNNKQVGALKSMVED  122 (144)
T ss_dssp             HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            4689999999999998 57899999999999975           9999999999999999999887777666654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.80  E-value=1.1e-05  Score=63.96  Aligned_cols=50  Identities=14%  Similarity=0.128  Sum_probs=43.0

Q ss_pred             CHHHHHHHHHHHHhc------CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846            1 MILDAISKLEEALMV------SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE   61 (152)
Q Consensus         1 mieeAIs~leeAL~i------dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld   61 (152)
                      .+++|+..|++++++      +|....++++||.+|...|           ++++|+.+|++|+++.
T Consensus       101 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~  156 (411)
T 4a1s_A          101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG-----------RFDEAAICCERHLTLA  156 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHH
Confidence            368899999999988      7888899999999998765           8888999999988883

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.79  E-value=4.1e-05  Score=63.69  Aligned_cols=55  Identities=7%  Similarity=-0.108  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .++|+..++++|++||++..||+..|.++..++.         .++++|+++++++|.++|+|.
T Consensus        49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~---------~~~~eeL~~~~~~L~~nPk~y  103 (306)
T 3dra_A           49 SERALHITELGINELASHYTIWIYRFNILKNLPN---------RNLYDELDWCEEIALDNEKNY  103 (306)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT---------SCHHHHHHHHHHHHHHCTTCC
T ss_pred             CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc---------ccHHHHHHHHHHHHHHCcccH
Confidence            3789999999999999999999999999987641         389999999999999999985

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.78  E-value=6e-05  Score=63.89  Aligned_cols=70  Identities=9%  Similarity=0.040  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHH---HHHhHHHHHHHHHHHHHcCCCcHH---HHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDE---AKEYFNKATLYFQQAVDEEPSNEL---YQKSL   71 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~e---A~~~~ekA~~~FqkAleldP~Ne~---YrkaL   71 (152)
                      ++++++.++++|++||.+..||.++|.++..+.-..++...   ..+.++++++||++||.++|+|+.   |.+.+
T Consensus       161 ~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~l  236 (331)
T 3dss_A          161 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL  236 (331)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            58999999999999999999999999999875211100000   126799999999999999999984   55544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.76  E-value=3.7e-05  Score=66.82  Aligned_cols=53  Identities=8%  Similarity=-0.071  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHhc-----CCCCh---HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc-----CCCcH
Q 031846            2 ILDAISKLEEALMV-----SPNRH---DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE-----EPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~i-----dP~~~---dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel-----dP~Ne   65 (152)
                      +++|+..|+++|++     -|+|.   .++.|||.+|..+|           +|++|+.+|+|||++     -|+|+
T Consensus       314 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g-----------~~~eA~~~~~~aL~i~~~~lG~~Hp  379 (433)
T 3qww_A          314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ-----------DWEGALKYGQKIIKPYSKHYPVYSL  379 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc-----------CHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            68999999999985     55554   56899999999876           889999999998865     57776

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.76  E-value=8.9e-06  Score=53.01  Aligned_cols=46  Identities=7%  Similarity=0.115  Sum_probs=40.6

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|+++|+++|++.+++++                   ..+++|+.+|++++.++|++.
T Consensus        50 ~~~~A~~~~~~al~~~p~~~~~~~~-------------------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           50 DWQKALNNYQSAIELNPDSPALQAR-------------------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             CHHHHHHHHHHHHHHCTTSTHHHHH-------------------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHH-------------------HHHHHHHHHHHHHhccCcccc
Confidence            4789999999999999999998855                   278889999999999999874

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.75  E-value=5.4e-05  Score=64.15  Aligned_cols=54  Identities=7%  Similarity=-0.090  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++++..++++|++||++..||++.|.++..++.          .++++++|+++++++||.|.
T Consensus       126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~----------~~~eel~~~~~~I~~~p~N~  179 (331)
T 3dss_A          126 WARELELCARFLEADERNFHCWDYRRFVAAQAAV----------APAEELAFTDSLITRNFSNY  179 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHCSCCH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc----------CHHHHHHHHHHHHHHCCCCH
Confidence            4677777777777777777777777777766541          26899999999999999885

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.69  E-value=0.00018  Score=54.22  Aligned_cols=61  Identities=8%  Similarity=-0.006  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhccc--CCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAF--LTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   72 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~--l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe   72 (152)
                      +++|+..|++|+++ |.+..++++||.+|....-  +       ..++++|+.+|++|++...  +.....|.
T Consensus       145 ~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~-------~~d~~~A~~~~~~A~~~g~--~~A~~~l~  207 (212)
T 3rjv_A          145 DVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFI-------EPNKQKALHWLNVSCLEGF--DTGCEEFD  207 (212)
T ss_dssp             HHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTB-------CCCHHHHHHHHHHHHHHTC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCC-------CCCHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence            68999999999999 8888999999999975310  1       2389999999999999854  44444443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.62  E-value=7e-05  Score=65.04  Aligned_cols=62  Identities=6%  Similarity=-0.084  Sum_probs=49.5

Q ss_pred             CHHHHHHHHHHHHhc-----CCCCh---HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc-----CCCcHHH
Q 031846            1 MILDAISKLEEALMV-----SPNRH---DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE-----EPSNELY   67 (152)
Q Consensus         1 mieeAIs~leeAL~i-----dP~~~---dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel-----dP~Ne~Y   67 (152)
                      .+++|+..|+++|++     -|+|+   ..|+|||.+|..+|           ++++|..+|+||+++     -|+|+..
T Consensus       355 ~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg-----------~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          355 DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLE-----------NKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcc-----------CHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            378999999999976     35554   45999999999876           788888888888775     6899988


Q ss_pred             HHHHHH
Q 031846           68 QKSLEV   73 (152)
Q Consensus        68 rkaLe~   73 (152)
                      +++...
T Consensus       424 ~~l~~~  429 (433)
T 3qww_A          424 SEIKQE  429 (433)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.59  E-value=0.00017  Score=61.74  Aligned_cols=66  Identities=12%  Similarity=0.089  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH---HHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL---YQKSL   71 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~---YrkaL   71 (152)
                      ++++++.++++|++||.+..||++.|.++..++...    .-...++++++++++|+.++|+|+.   |++.|
T Consensus       183 ~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~----~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~L  251 (349)
T 3q7a_A          183 WGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAE----TSSRSLQDELIYILKSIHLIPHNVSAWNYLRGF  251 (349)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc----cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            459999999999999999999999999998765210    0134589999999999999999984   65554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.58  E-value=0.0002  Score=51.31  Aligned_cols=49  Identities=20%  Similarity=0.210  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHh-cccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTS-HAFLTPDQDEAKEYFNKATLYFQQAVDE   60 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~-~g~l~pd~~eA~~~~ekA~~~FqkAlel   60 (152)
                      +++|+..|++|.+.  .+.+|+++||.+|.. .|.        ..++++|+++|++|.+.
T Consensus        41 ~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~--------~~d~~~A~~~~~~Aa~~   90 (138)
T 1klx_A           41 KQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYV--------KKDLRKAAQYYSKACGL   90 (138)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSS--------CCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCC--------CccHHHHHHHHHHHHcC
Confidence            45678888888776  677888888888866 121        13777788888888776

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.56  E-value=0.00013  Score=62.51  Aligned_cols=53  Identities=9%  Similarity=-0.041  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      ++|+..++++|++||++..+|+..|.++..++          ..+++++++++++|.++|+|.
T Consensus        71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~----------~~l~eEL~~~~~~L~~nPKny  123 (349)
T 3q7a_A           71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLN----------KSLEDELRLMNEFAVQNLKSY  123 (349)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----------CCHHHHHHHHHHHHHTTCCCH
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHhCCCcH
Confidence            67888888888888888888888888887654          146666666666666666664

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.53  E-value=0.00012  Score=64.45  Aligned_cols=54  Identities=15%  Similarity=0.166  Sum_probs=43.5

Q ss_pred             CHHHHHHHHHHHHhc-----CCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc-----CCCcH
Q 031846            1 MILDAISKLEEALMV-----SPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE-----EPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~i-----dP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel-----dP~Ne   65 (152)
                      .+++|+..|+++|++     -|+|   ..++.|||.+|..+|           +|++|..+|++||++     -|+|+
T Consensus       324 ~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g-----------~~~eA~~~~~~aL~i~~~~lG~~Hp  390 (490)
T 3n71_A          324 LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQ-----------AYEEASHYARRMVDGYMKLYHHNNA  390 (490)
T ss_dssp             CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            378999999999975     3445   456999999999876           888888888888876     57775

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.53  E-value=0.00012  Score=63.64  Aligned_cols=83  Identities=14%  Similarity=-0.034  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCCh-----------------------HH----------HHHhHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQ-----------------------DE----------AKEYFN   48 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~-----------------------~e----------A~~~~e   48 (152)
                      +.+|+..|++||++||+++.||--|+.+|.-+....+..                       ..          -+++++
T Consensus       215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d  294 (372)
T 3ly7_A          215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTD  294 (372)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHH
Confidence            478999999999999999999999888884321111110                       00          135999


Q ss_pred             HHHHHHHHHHHcCCCcHH-------------HHHHHHHHhcCchhhHHH
Q 031846           49 KATLYFQQAVDEEPSNEL-------------YQKSLEVAAKAPELHMEI   84 (152)
Q Consensus        49 kA~~~FqkAleldP~Ne~-------------YrkaLe~~~kapel~~e~   84 (152)
                      +|+.+++||+++||+...             +..+++.+.+|..|.+-.
T Consensus       295 ~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          295 ESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            999999999999987541             445556666665555444

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.53  E-value=9.7e-05  Score=63.68  Aligned_cols=54  Identities=11%  Similarity=0.110  Sum_probs=43.3

Q ss_pred             CHHHHHHHHHHHHhc-----CCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc-----CCCcH
Q 031846            1 MILDAISKLEEALMV-----SPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE-----EPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~i-----dP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel-----dP~Ne   65 (152)
                      ++++|+..|+++|++     -|+|   ..++.|||.+|..+|           +|++|+.+|+|+|++     -|+|+
T Consensus       302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g-----------~~~eA~~~~~~~L~i~~~~lg~~Hp  368 (429)
T 3qwp_A          302 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG-----------LLEEALFYGTRTMEPYRIFFPGSHP  368 (429)
T ss_dssp             CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc-----------cHHHHHHHHHHHHHhHHHHcCCCCh
Confidence            478999999999975     3555   456999999998765           888888888888865     47776

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.46  E-value=0.0007  Score=48.38  Aligned_cols=45  Identities=18%  Similarity=0.076  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE   61 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld   61 (152)
                      +++|+..|+++.+.+  +.++.  ||..|...           ..+++|+++|++|.+.+
T Consensus        11 ~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g-----------~~~~~A~~~~~~Aa~~g   55 (138)
T 1klx_A           11 LKKAIQYYVKACELN--EMFGC--LSLVSNSQ-----------INKQKLFQYLSKACELN   55 (138)
T ss_dssp             HHHHHHHHHHHHHTT--CTTHH--HHHHTCTT-----------SCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCC--CHhhh--HHHHHHcC-----------CCHHHHHHHHHHHHcCC
Confidence            567888888888776  44445  88877653           25666888888888773

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.45  E-value=0.00017  Score=63.52  Aligned_cols=65  Identities=9%  Similarity=-0.027  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHhc-----CCCCh---HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH-----cCCCcHHH
Q 031846            1 MILDAISKLEEALMV-----SPNRH---DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD-----EEPSNELY   67 (152)
Q Consensus         1 mieeAIs~leeAL~i-----dP~~~---dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle-----ldP~Ne~Y   67 (152)
                      .+++|+..|+++|++     -|+|+   .+++|||.+|..+|           ++++|..+|+||++     +-|+|+..
T Consensus       366 ~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G-----------~~~eA~~~~~~Al~i~~~~lG~~Hp~~  434 (490)
T 3n71_A          366 AYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAG-----------HIEVGHGMICKAYAILLVTHGPSHPIT  434 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence            378999999999976     45554   45999999999876           78888888888886     47999987


Q ss_pred             HHHHHHHhc
Q 031846           68 QKSLEVAAK   76 (152)
Q Consensus        68 rkaLe~~~k   76 (152)
                      .+.+.+...
T Consensus       435 ~~~~~~l~~  443 (490)
T 3n71_A          435 KDLEAMRMQ  443 (490)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777655544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.44  E-value=0.00022  Score=61.44  Aligned_cols=64  Identities=11%  Similarity=0.112  Sum_probs=50.2

Q ss_pred             CHHHHHHHHHHHHhc-----CCCChH---HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc-----CCCcHHH
Q 031846            1 MILDAISKLEEALMV-----SPNRHD---TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE-----EPSNELY   67 (152)
Q Consensus         1 mieeAIs~leeAL~i-----dP~~~d---A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel-----dP~Ne~Y   67 (152)
                      .+++|+..++++|++     -|+|++   .++|||.+|..+|           ++++|..+|+||+++     -|+|+.+
T Consensus       344 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g-----------~~~eA~~~~~~Al~i~~~~lG~~Hp~~  412 (429)
T 3qwp_A          344 LLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQG-----------MFPQAMKNLRLAFDIMRVTHGREHSLI  412 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred             cHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence            378999999999965     355554   5999999999876           777777777777764     7999999


Q ss_pred             HHHHHHHh
Q 031846           68 QKSLEVAA   75 (152)
Q Consensus        68 rkaLe~~~   75 (152)
                      +..+....
T Consensus       413 ~~~~~~l~  420 (429)
T 3qwp_A          413 EDLILLLE  420 (429)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88876544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.44  E-value=8.8e-05  Score=51.28  Aligned_cols=43  Identities=19%  Similarity=0.149  Sum_probs=36.0

Q ss_pred             CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846           16 SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus        16 dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      +|+++++++.+|.+++..+-        ....++|..+|++||++||+|..
T Consensus         2 ~p~~~~~~~~~a~al~~~~~--------~~~~~~A~~~l~~AL~~dp~~~r   44 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHK--------QAMTDEVSLLLEQALQLEPYNEA   44 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTT--------TCCCHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCHHHHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHHCcCCHH
Confidence            79999999999999975430        12379999999999999999973

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.37  E-value=0.0004  Score=57.98  Aligned_cols=52  Identities=13%  Similarity=0.044  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHh-cccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTS-HAFLTPDQDEAKEYFNKATLYFQQAVDEEPS   63 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~-~g~l~pd~~eA~~~~ekA~~~FqkAleldP~   63 (152)
                      +++|+..|++|++.+  +.+++++||.+|.. .|        ..+++++|+.+|++|++++|+
T Consensus       383 ~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g--------~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          383 EQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG--------VERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS--------SCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC--------CCCCHHHHHHHHHHHHHCCCC
Confidence            455666666666543  45666666666653 01        023677777777777777743

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.34  E-value=0.00026  Score=59.07  Aligned_cols=51  Identities=20%  Similarity=0.111  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHhcCCCC--hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC--CC
Q 031846            2 ILDAISKLEEALMVSPNR--HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE--PS   63 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~--~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld--P~   63 (152)
                      +++|+..|++++...++.  ++++++||.++..+|           +|++|+.+|++|+.-+  |.
T Consensus       151 ~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG-----------~~~eAl~~l~~a~~g~~~P~  205 (282)
T 4f3v_A          151 WTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA-----------LFTEAERRLTEANDSPAGEA  205 (282)
T ss_dssp             HHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTSTTTTT
T ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHhcCCCCcc
Confidence            567788888777654332  568999999999865           9999999999999665  65

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.34  E-value=0.00017  Score=56.95  Aligned_cols=52  Identities=15%  Similarity=0.000  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHHHHhcCCCChH-----HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846            1 MILDAISKLEEALMVSPNRHD-----TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS   63 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~d-----A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~   63 (152)
                      .+++|+..++++|.+.|..+.     ++++||.+|...           +++++|..+|++|+++.|+
T Consensus        29 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~~~   85 (373)
T 1hz4_A           29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK-----------GELTRSLALMQQTEQMARQ   85 (373)
T ss_dssp             CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhc-----------CcHHHHHHHHHHHHHHHHh
Confidence            368999999999999987754     688999999875           4999999999999998764

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.17  E-value=0.00094  Score=55.74  Aligned_cols=49  Identities=20%  Similarity=0.104  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE   60 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel   60 (152)
                      +++|+..|++|++.  .+.+++++||.+|...|.        ..++++|+++|++|++.
T Consensus       312 ~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~--------~~~~~~A~~~~~~a~~~  360 (490)
T 2xm6_A          312 REQAISWYTKSAEQ--GDATAQANLGAIYFRLGS--------EEEHKKAVEWFRKAAAK  360 (490)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCC--------HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCC--------cccHHHHHHHHHHHHHC
Confidence            45555555555554  344555555555554431        23555555555555554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.10  E-value=0.00065  Score=54.30  Aligned_cols=52  Identities=10%  Similarity=0.029  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHHhcCCCChH-----------------HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846            1 MILDAISKLEEALMVSPNRHD-----------------TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS   63 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~d-----------------A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~   63 (152)
                      .+++|++.|+++++++|+..+                 |+.+||.+|..+|           ++++|+++|++++.+.+.
T Consensus        19 ~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~-----------~~~~a~~~~~~~~~~~~~   87 (434)
T 4b4t_Q           19 QYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMG-----------AKDKLREFIPHSTEYMMQ   87 (434)
T ss_dssp             CHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHTHHHHHT
T ss_pred             CHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHH
Confidence            378999999999999998764                 6999999999865           888888888888876554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.09  E-value=0.00055  Score=54.05  Aligned_cols=52  Identities=13%  Similarity=0.076  Sum_probs=44.9

Q ss_pred             CHHHHHHHHHHHHhcC--------CCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846            1 MILDAISKLEEALMVS--------PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS   63 (152)
Q Consensus         1 mieeAIs~leeAL~id--------P~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~   63 (152)
                      .+++|+..|+++|++.        |....++.+||.+|...|           ++++|..+|++|+++.|.
T Consensus       108 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          108 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-----------RLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHhhc
Confidence            3689999999999876        445678899999998765           999999999999999886

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.09  E-value=0.00056  Score=58.29  Aligned_cols=52  Identities=12%  Similarity=0.025  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHhcCCCC-hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846            2 ILDAISKLEEALMVSPNR-HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS   63 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~-~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~   63 (152)
                      .+.|..+|++||+|||++ .++++..|..|...          .+++++|..++++|+..+|.
T Consensus       220 ~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~----------~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          220 MEKAHTAFEHLTRYCSAHDPDHHITYADALCIP----------LNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTT----------TTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh----------cCCHHHHHHHHHHHHcCCCC
Confidence            478999999999999986 99999999998763          24999999999999999887

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.86  E-value=0.00086  Score=51.72  Aligned_cols=73  Identities=10%  Similarity=0.104  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC-CCc-H--------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE-PSN-E--------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld-P~N-e--------------   65 (152)
                      ++.+...|++.++.+|...++.|++|.++.+..        ...++++++.+|+..++.+ |++ .              
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~--------~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~   85 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSK--------YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK   85 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCS--------SHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc
Confidence            567889999999999999999999999998743        3568999999999999999 733 2              


Q ss_pred             HHHHHHHHHhcCchhhH
Q 031846           66 LYQKSLEVAAKAPELHM   82 (152)
Q Consensus        66 ~YrkaLe~~~kapel~~   82 (152)
                      .|.++++.++...+..|
T Consensus        86 ~Y~~A~~y~~~lL~ieP  102 (152)
T 1pc2_A           86 EYEKALKYVRGLLQTEP  102 (152)
T ss_dssp             CHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHhcCC
Confidence            37777766665555554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=96.82  E-value=0.0022  Score=54.11  Aligned_cols=50  Identities=4%  Similarity=0.034  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAV   58 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAl   58 (152)
                      +++|+..|+++++.+|..+.++++||.+|.....       ...++++|+++|++|.
T Consensus       195 ~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~-------~~~d~~~A~~~~~~aa  244 (452)
T 3e4b_A          195 QAELLKQMEAGVSRGTVTAQRVDSVARVLGDATL-------GTPDEKTAQALLEKIA  244 (452)
T ss_dssp             HHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGG-------SSCCHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------CCCCHHHHHHHHHHHc
Confidence            4678888888888888888888888888754211       1247777777777776

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=96.57  E-value=0.0042  Score=52.35  Aligned_cols=49  Identities=12%  Similarity=0.079  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE   61 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld   61 (152)
                      +++|+..|+++.   |.+.+++++||.+|....        ..+++++|+++|++|++.+
T Consensus       233 ~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~--------~~~d~~~A~~~~~~Aa~~g  281 (452)
T 3e4b_A          233 EKTAQALLEKIA---PGYPASWVSLAQLLYDFP--------ELGDVEQMMKYLDNGRAAD  281 (452)
T ss_dssp             HHHHHHHHHHHG---GGSTHHHHHHHHHHHHSG--------GGCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHc---CCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHCC
Confidence            578999999988   899999999999854211        1458889999999988765

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=96.12  E-value=0.0081  Score=50.64  Aligned_cols=58  Identities=12%  Similarity=-0.051  Sum_probs=49.0

Q ss_pred             CHHHHHHHHHHHHhc----------CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHH
Q 031846            1 MILDAISKLEEALMV----------SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKS   70 (152)
Q Consensus         1 mieeAIs~leeAL~i----------dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yrka   70 (152)
                      .++||...|+.++++          +|++++++.|+......+|           +  +|.++++++.+++|+|+.-...
T Consensus       226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg-----------k--~a~~l~~qL~~~~P~hp~i~d~  292 (310)
T 3mv2_B          226 NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG-----------L--DTEDLTNQLVKLDHEHAFIKHH  292 (310)
T ss_dssp             CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT-----------C--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC-----------h--HHHHHHHHHHHhCCCChHHHHH
Confidence            478999999988887          6999999999998888765           3  7899999999999999864443


Q ss_pred             H
Q 031846           71 L   71 (152)
Q Consensus        71 L   71 (152)
                      .
T Consensus       293 ~  293 (310)
T 3mv2_B          293 Q  293 (310)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.03  E-value=0.005  Score=49.08  Aligned_cols=51  Identities=12%  Similarity=0.074  Sum_probs=43.2

Q ss_pred             CHHHHHHHHHHHHhc------CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846            1 MILDAISKLEEALMV------SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP   62 (152)
Q Consensus         1 mieeAIs~leeAL~i------dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP   62 (152)
                      ++++|+..+++++.+      ++...+++.++|.+|..+|           +|++|..+|++|+.+.+
T Consensus       150 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          150 QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR-----------NLAKSKASLTAARTAAN  206 (434)
T ss_dssp             CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHhh
Confidence            478999999999876      5556779999999999754           99999999999998754

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=95.19  E-value=0.078  Score=38.96  Aligned_cols=67  Identities=22%  Similarity=0.304  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHH-----HHHHHHhc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ-----KSLEVAAK   76 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yr-----kaLe~~~k   76 (152)
                      ++.|+..+.+|++.|-.        |           +..+|...|.+|+++|.+++..+|.|+.-+     +.-+....
T Consensus        15 l~kAi~lv~~Ave~D~a--------g-----------~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~R   75 (117)
T 2cpt_A           15 LQKAIDLASKAAQEDKA--------G-----------NYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR   75 (117)
T ss_dssp             HHHHHHHHHHHHHHHHH--------T-----------CHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHc--------c-----------CHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence            57788888888743211        1           224566788899999999999886665322     34455556


Q ss_pred             CchhhHHHHHh
Q 031846           77 APELHMEIHKH   87 (152)
Q Consensus        77 apel~~e~~~~   87 (152)
                      +-+|...|.+.
T Consensus        76 AE~LK~~l~~~   86 (117)
T 2cpt_A           76 AEKLKEYLKNK   86 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhh
Confidence            65666555443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.17  E-value=0.058  Score=48.06  Aligned_cols=61  Identities=13%  Similarity=0.073  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV   73 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~   73 (152)
                      ++.|...|++|+.++|++..+|..||......|           +.-+|+-||-|+|....-.+..+.+|..
T Consensus       168 ~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~-----------~~l~a~y~y~rsl~~~~Pf~~a~~nL~~  228 (497)
T 1ya0_A          168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKG-----------DHLTTIFYYCRSIAVKFPFPAASTNLQK  228 (497)
T ss_dssp             HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCchHHHHHHHHhccc-----------ccHHHHHHHHHHHhcCCCChhHHHHHHH
Confidence            468999999999999999999999999998654           7778999999999988778877777643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.13  E-value=0.032  Score=56.42  Aligned_cols=53  Identities=15%  Similarity=0.075  Sum_probs=48.2

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP   62 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP   62 (152)
                      .++|||+.||.+|.+||.|...+..||++|.+..         -++..+++++|...+++.|
T Consensus      1295 ~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~---------peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A         1295 YFEELITMLEAALGLERAHMGMFTELAILYSKFK---------PQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred             CHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC---------HHHHHHHHHHHHHhcccch
Confidence            3789999999999999999999999999999864         4788899999999999888

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.09  E-value=0.045  Score=55.36  Aligned_cols=47  Identities=15%  Similarity=0.203  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      ++|||..|++|     +++++|+++|.++.+.|           +|++|+++|+.|.+.+++.
T Consensus      1121 ~kEAIdsYiKA-----dD~say~eVa~~~~~lG-----------kyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A         1121 VKEAIDSYIKA-----DDPSSYMEVVQAANTSG-----------NWEELVKYLQMARKKARES 1167 (1630)
T ss_pred             HHHHHHHHHhc-----CChHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhcccc
Confidence            44555555443     44455555555554432           6666666666666666543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.93  E-value=0.022  Score=44.72  Aligned_cols=49  Identities=12%  Similarity=0.083  Sum_probs=39.7

Q ss_pred             CHHHHHHHHHHHHhcCCCChH---------HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846            1 MILDAISKLEEALMVSPNRHD---------TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE   60 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~d---------A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel   60 (152)
                      +|+.|+.....++.+..++.+         +++++|+++...           ++|.+|..+|++||.+
T Consensus        35 LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~-----------~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           35 LHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHD-----------KEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             CHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHH
Confidence            578888888887766554444         899999999975           4999999999998765

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=94.43  E-value=0.14  Score=45.36  Aligned_cols=77  Identities=16%  Similarity=0.131  Sum_probs=48.5

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc------------cCCCChH-------HHHHhHHHHHHHHHHHHHcC
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHA------------FLTPDQD-------EAKEYFNKATLYFQQAVDEE   61 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g------------~l~pd~~-------eA~~~~ekA~~~FqkAleld   61 (152)
                      ++++|++.|++|     ++..+|-.++.++...|            .+.||..       +..++|++|+.+|+++|.+|
T Consensus       163 ~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le  237 (449)
T 1b89_A          163 EYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE  237 (449)
T ss_dssp             CHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred             cHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence            478999999999     24444444433333322            0000000       11259999999999999999


Q ss_pred             CCcH----------------HHHHHHHHHhcCchhhH
Q 031846           62 PSNE----------------LYQKSLEVAAKAPELHM   82 (152)
Q Consensus        62 P~Ne----------------~YrkaLe~~~kapel~~   82 (152)
                      +.|.                .....++++.+..++..
T Consensus       238 ~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k  274 (449)
T 1b89_A          238 RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK  274 (449)
T ss_dssp             TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence            9994                35556677766666665

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=93.93  E-value=0.029  Score=49.82  Aligned_cols=53  Identities=15%  Similarity=0.075  Sum_probs=47.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP   62 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP   62 (152)
                      .++|||+.|+++|.+++.|...+..||.+|++..         -++..++++.|...+.+.|
T Consensus       222 ~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~---------p~k~~ehl~~~~~~ini~k  274 (449)
T 1b89_A          222 YFEELITMLEAALGLERAHMGMFTELAILYSKFK---------PQKMREHLELFWSRVNIPK  274 (449)
T ss_dssp             CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC---------HHHHHHHHHHHSTTSCHHH
T ss_pred             CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC---------HHHHHHHHHHHHHHhcCcH
Confidence            4789999999999999999999999999999875         4788888889988888888

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.72  E-value=0.23  Score=41.73  Aligned_cols=59  Identities=17%  Similarity=0.122  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----HHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----LYQKSL   71 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----~YrkaL   71 (152)
                      +++|++.++..|+-+|.+.+.-+.|-..|+-.           +++++|..-.+-+.+++|+..    .||.++
T Consensus        13 L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~-----------G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI   75 (273)
T 1zbp_A           13 LQQALELLIEAIKASPKDASLRSSFIELLCID-----------GDFERADEQLMQSIKLFPEYLPGASQLRHLV   75 (273)
T ss_dssp             HHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence            68999999999999999999999999998864           599999999999999999985    677775

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=93.67  E-value=0.077  Score=35.93  Aligned_cols=27  Identities=15%  Similarity=0.079  Sum_probs=25.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLG   27 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLG   27 (152)
                      .+++|+..+++||+++|++..++.|++
T Consensus        61 ~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           61 DLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            378999999999999999999999998

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=93.13  E-value=0.21  Score=41.91  Aligned_cols=47  Identities=21%  Similarity=0.239  Sum_probs=25.7

Q ss_pred             HHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846            5 AISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP   62 (152)
Q Consensus         5 AIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP   62 (152)
                      |++.|++.++.++....+++.||.+|...           +++++|++++++.|+.+|
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~-----------g~~eeAL~~l~~~i~~~~  131 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAIL-----------GDLDKSLETCVEGIDNDE  131 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhccCC
Confidence            44555555555444455555556555542           355666666666555555

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=92.97  E-value=0.25  Score=34.59  Aligned_cols=68  Identities=10%  Similarity=0.093  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH----HHHHHHHHhc
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL----YQKSLEVAAK   76 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~----YrkaLe~~~k   76 (152)
                      |++.|+..+.+|++.|-..                   +..+|...|.+|+++|.+|+..+|+...    -.+.-+....
T Consensus        11 ~l~~Ai~lv~~Ave~D~~g-------------------~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~R   71 (93)
T 1wfd_A           11 DSTAAVAVLKRAVELDAES-------------------RYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDR   71 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhC-------------------CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            5788888888887664322                   2245667899999999999999987653    2244455566


Q ss_pred             CchhhHHHHHh
Q 031846           77 APELHMEIHKH   87 (152)
Q Consensus        77 apel~~e~~~~   87 (152)
                      +-+|...|.+.
T Consensus        72 AE~LK~~l~~~   82 (93)
T 1wfd_A           72 AENIKKYLDQE   82 (93)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc
Confidence            66666555544

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=92.84  E-value=0.54  Score=40.56  Aligned_cols=51  Identities=6%  Similarity=-0.084  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      .....|+++|...|...+.|+..+.-+...           +++++|.+.|++|+.. |.+..
T Consensus       197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~-----------~~~~~ar~i~erAi~~-P~~~~  247 (493)
T 2uy1_A          197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGI-----------GQKEKAKKVVERGIEM-SDGMF  247 (493)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH-CCSSH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhC-CCcHH
Confidence            356799999999999999988888776654           4899999999999999 98864

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.74  E-value=0.65  Score=39.04  Aligned_cols=68  Identities=18%  Similarity=0.167  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---HHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---LYQKSLEV   73 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---~YrkaLe~   73 (152)
                      +++|+..+++++..+|-+.++|..|=.+|...|    +..+|...|++....+.+-|-++|.-+   +|+..|.-
T Consensus       187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~G----r~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il~~  257 (388)
T 2ff4_A          187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSD----RQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQ  257 (388)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHcC
Confidence            578999999999999999999999999999876    567888888888888888888999876   56666643

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=91.86  E-value=0.31  Score=44.60  Aligned_cols=76  Identities=13%  Similarity=0.012  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC---cH-------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS---NE-------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~---Ne-------------   65 (152)
                      ++.|...|+++|+..|+..+.+-..+....+           .++.++|-..|++|+...|+   +.             
T Consensus       486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~-----------~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~  554 (679)
T 4e6h_A          486 TKTACKVLELGLKYFATDGEYINKYLDFLIY-----------VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV  554 (679)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence            4678889999999999887655444444333           45899999999999999984   21             


Q ss_pred             --------HHHHHHHHHhcCchhhHHHHHhh
Q 031846           66 --------LYQKSLEVAAKAPELHMEIHKHG   88 (152)
Q Consensus        66 --------~YrkaLe~~~kapel~~e~~~~~   88 (152)
                              ++++.++..++.+.+..-+.|..
T Consensus       555 G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~  585 (679)
T 4e6h_A          555 GSLNSVRTLEKRFFEKFPEVNKLEEFTNKYK  585 (679)
T ss_dssp             CCSHHHHHHHHHHHHHSTTCCHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhCCCCcHHHHHHHHhc
Confidence                    58888999999999888888865

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.33  E-value=0.49  Score=35.22  Aligned_cols=40  Identities=13%  Similarity=0.275  Sum_probs=31.2

Q ss_pred             ChHHHHHhHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHhcCc
Q 031846           39 DQDEAKEYFNKATLYFQQAVDEEPS-----NELYQKSLEVAAKAP   78 (152)
Q Consensus        39 d~~eA~~~~ekA~~~FqkAleldP~-----Ne~YrkaLe~~~kap   78 (152)
                      ++++|.+.|.+.+.+++++|.+..+     .+.|.++.+|-.|=-
T Consensus        37 ~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~   81 (116)
T 2dl1_A           37 QKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMK   81 (116)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence            4577889999999999999999885     567777766655543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=89.23  E-value=0.6  Score=42.68  Aligned_cols=53  Identities=21%  Similarity=0.148  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      .|-+..||++|..||.+.++|..+-....+.           +.++.|-..|++||...|....
T Consensus        49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~-----------~~~~~aR~vyEraL~~fP~~~~  101 (679)
T 4e6h_A           49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSL-----------KQWKQVYETFDKLHDRFPLMAN  101 (679)
T ss_dssp             SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhc-----------CcHHHHHHHHHHHHHHCCCCHH
Confidence            3567899999999999999999998887754           3788999999999999998763

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=88.88  E-value=0.48  Score=32.50  Aligned_cols=45  Identities=18%  Similarity=0.071  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      ++.||+...+|++.|-..                   +-.+|...|.+|+++|.+++..+|+..
T Consensus         8 ~~~Ai~lv~~Ave~D~~g-------------------~y~eAl~lY~~aie~l~~~lk~e~d~~   52 (83)
T 2v6y_A            8 EDMARKYAILAVKADKEG-------------------KVEDAITYYKKAIEVLSQIIVLYPESV   52 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence            577888888887664222                   224566789999999999999888654

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=88.54  E-value=1.2  Score=30.19  Aligned_cols=45  Identities=16%  Similarity=0.224  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      ++.|+..+.+|++.|-..                   +..+|...|.+|+++|.+++..+|+..
T Consensus        10 l~~A~~l~~~Av~~D~~g-------------------~y~eAl~~Y~~aie~l~~a~k~e~~~~   54 (85)
T 2v6x_A           10 LTKGIELVQKAIDLDTAT-------------------QYEEAYTAYYNGLDYLMLALKYEKNPK   54 (85)
T ss_dssp             HHHHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            567777777777442211                   224566788888888889988887544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=84.09  E-value=0.7  Score=34.38  Aligned_cols=55  Identities=7%  Similarity=0.082  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC-CCc
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE-PSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld-P~N   64 (152)
                      +..+...|++++..++...++-|+++.++....        ...+..+++..++..+..+ |++
T Consensus        17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~--------~~~d~~~GI~lLe~l~~~~~p~~   72 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTR--------YNDDIRKGIVLLEELLPKGSKEE   72 (126)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSS--------SHHHHHHHHHHHHHHTTTSCHHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHHHhcCCcch
Confidence            456778899999999999999999999997643        2467788999999999988 633

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=83.57  E-value=1.4  Score=30.35  Aligned_cols=45  Identities=18%  Similarity=0.041  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      ++.|++...+|++.|-..                   +-.+|...|.+|+++|.+++..+|+..
T Consensus        16 ~~~Ai~lv~~Ave~D~~g-------------------~y~eAl~lY~~aie~l~~alk~e~d~~   60 (83)
T 2w2u_A           16 EEMARKYAINAVKADKEG-------------------NAEEAITNYKKAIEVLAQLVSLYRDGS   60 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHHHHHHHHHHHSTTSS
T ss_pred             HHHHHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence            467888888887653222                   224566688899999999999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	152
d1zu2a1	145	a.118.8.1 (A:1-145) Mitochondrial import receptor	2e-09

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 51.0 bits (120), Expect = 2e-09
 Identities = 54/90 (60%), Positives = 70/90 (77%)

Query: 1   MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
           MI +AI+K EEAL++ P + + +WC+GNA+TS AFLTPD+ EAK  F+ AT +FQQAVDE
Sbjct: 56  MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115

Query: 61  EPSNELYQKSLEVAAKAPELHMEIHKHGLG 90
           +P N  Y KSLE+ AKAP+LH E +K GLG
Sbjct: 116 QPDNTHYLKSLEMTAKAPQLHAEAYKQGLG 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	152
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.88
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.44
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.43
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.36
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.31
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.29
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.29
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.28
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.26
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.25
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.25
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.22
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.21
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.14
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.12
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.11
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.1
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	99.08
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.08
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.07
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.01
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.98
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.96
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.94
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.93
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.86
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.85
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.83
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.79
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.75
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.74
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.66
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.63
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.56
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.55
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.48
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.39
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.3
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.15
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.1
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.07
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.03
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.78
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.6
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.52
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.24
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.92
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.73
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.7
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.32
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.04
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	93.32
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	87.06
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	85.51
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	85.1

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=5.3e-23  Score=151.30  Aligned_cols=89  Identities=60%  Similarity=0.974  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchhh
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELH   81 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel~   81 (152)
                      +++||..|++||++||+++++|||||++|..+|.++++..++.++|++|+++|++|++++|+|+.|+++|++..|+|++|
T Consensus        57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~  136 (145)
T d1zu2a1          57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH  136 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhc
Q 031846           82 MEIHKHGLG   90 (152)
Q Consensus        82 ~e~~~~~~~   90 (152)
                      .|++||++|
T Consensus       137 ~e~~k~~~~  145 (145)
T d1zu2a1         137 AEAYKQGLG  145 (145)
T ss_dssp             HHHHHSSSC
T ss_pred             HHHHHHhcC
Confidence            999999874

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.44  E-value=6.8e-14  Score=101.95  Aligned_cols=64  Identities=17%  Similarity=0.197  Sum_probs=56.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      ++++|+..|++||++||+++++|+++|.+|..++. .....+.++.+++|+.+|++||++||+|.
T Consensus        12 ~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~-~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~   75 (145)
T d1zu2a1          12 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQ-FHSISDAKQMIQEAITKFEEALLIDPKKD   75 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHHHHHhcchhh
Confidence            47999999999999999999999999999987653 23445677899999999999999999985

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.8e-13  Score=98.76  Aligned_cols=71  Identities=11%  Similarity=-0.013  Sum_probs=60.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH--------------
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL--------------   66 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~--------------   66 (152)
                      .+++|+..|++||++||+++.+|++||.+|..+|           +|++|+.+|++||+++|+|..              
T Consensus        19 ~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~-----------~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~   87 (201)
T d2c2la1          19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ-----------QPEQALADCRRALELDGQSVKAHFFLGQCQLEMES   87 (201)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhh-----------hhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence            4799999999999999999999999999999865           999999999999999999962              


Q ss_pred             HHHHHHHHhcCchhhH
Q 031846           67 YQKSLEVAAKAPELHM   82 (152)
Q Consensus        67 YrkaLe~~~kapel~~   82 (152)
                      |.++++...++.++.+
T Consensus        88 ~~~A~~~~~~al~l~p  103 (201)
T d2c2la1          88 YDEAIANLQRAYSLAK  103 (201)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            5555555555555444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=8e-13  Score=92.20  Aligned_cols=74  Identities=24%  Similarity=0.274  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------   65 (152)
                      +++||..|+++|++||++..+|+++|++|..+|           ++++|+.+|++|++++|+|.                
T Consensus        19 ~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          19 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG-----------DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhcCCcchhhhhcccccccccc-----------cccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence            789999999999999999999999999999754           99999999999999999985                


Q ss_pred             -----HHHHHHHHHhcCchhhHHHHH
Q 031846           66 -----LYQKSLEVAAKAPELHMEIHK   86 (152)
Q Consensus        66 -----~YrkaLe~~~kapel~~e~~~   86 (152)
                           .|++++++.+..++++..+.+
T Consensus        88 ~~A~~~~~~a~~~~p~~~~~~~~l~~  113 (117)
T d1elwa_          88 EEAKRTYEEGLKHEANNPQLKEGLQN  113 (117)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                 366666666666666655543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.36  E-value=1.3e-12  Score=95.34  Aligned_cols=65  Identities=17%  Similarity=0.212  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhc
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAK   76 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~k   76 (152)
                      .+++||..|++||++||++.++|+++|.+|..+|           +|++|+.+|++|++++|+|+..+..|....+
T Consensus        92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~-----------~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~  156 (169)
T d1ihga1          92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLK-----------EYDQALADLKKAQEIAPEDKAIQAELLKVKQ  156 (169)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            4789999999999999999999999999999865           9999999999999999999988777765544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4.2e-12  Score=91.41  Aligned_cols=54  Identities=13%  Similarity=-0.020  Sum_probs=48.1

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|++||++||++..+|++||.+|..+|           ++++|+.+|++||+++|++.
T Consensus        25 ~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-----------~~~~A~~~~~kal~~~p~~~   78 (159)
T d1a17a_          25 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-----------CYGYALGDATRAIELDKKYI   78 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHhhhccccchhhhhhhhhhHHHHHhcc-----------ccchHHHHHHHHHHHcccch
Confidence            4789999999999999999999999999998765           89999999999999999884

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.8e-13  Score=93.89  Aligned_cols=54  Identities=13%  Similarity=0.131  Sum_probs=50.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +|++|+.+|+++|+++|+++.+++|+|++|..+|           +|++|+++|++||+++|++.
T Consensus        19 ~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~al~l~~~~~   72 (128)
T d1elra_          19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG-----------DYNKCRELCEKAIEVGRENR   72 (128)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcC-----------chHHHHHHHHHHHHhCcccH
Confidence            5899999999999999999999999999999864           99999999999999999874

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3e-12  Score=87.02  Aligned_cols=65  Identities=17%  Similarity=0.094  Sum_probs=56.8

Q ss_pred             CHHHHHHHHHHHHhcCCCC-------hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNR-------HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV   73 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~-------~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~   73 (152)
                      .+++||..|++||+++|++       .++|++||++|.++|           ++++|+++|++||+++|+|+.....+..
T Consensus        20 ~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g-----------~~~~A~~~y~~aL~l~P~~~~a~~Nl~~   88 (95)
T d1tjca_          20 DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-----------DLDKALLLTKKLLELDPEHQRANGNLKY   88 (95)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcC-----------ChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            4789999999999987654       689999999999875           9999999999999999999988877765


Q ss_pred             Hhc
Q 031846           74 AAK   76 (152)
Q Consensus        74 ~~k   76 (152)
                      ..+
T Consensus        89 ~~~   91 (95)
T d1tjca_          89 FEY   91 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=5.3e-12  Score=93.61  Aligned_cols=54  Identities=20%  Similarity=0.291  Sum_probs=50.4

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|++||++||+++++|++||.+|..+|           ++++|+++|++|++++|++.
T Consensus        52 ~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~  105 (259)
T d1xnfa_          52 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG-----------NFDAAYEAFDSVLELDPTYN  105 (259)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCT
T ss_pred             CHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHH-----------HHHHhhhhhhHHHHHHhhhh
Confidence            3789999999999999999999999999999865           99999999999999999985

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.9e-12  Score=87.32  Aligned_cols=63  Identities=13%  Similarity=0.091  Sum_probs=58.1

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   74 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~   74 (152)
                      .+++|+..|+++|+++|++..+|+++|++|..+|           ++++|+.+|++|++++|+|+.+...+.-.
T Consensus        52 ~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-----------~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          52 DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN-----------RFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             cccccchhhhhHHHhccchhhHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3789999999999999999999999999999865           99999999999999999999988887543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.26  E-value=7.3e-12  Score=90.90  Aligned_cols=64  Identities=22%  Similarity=0.272  Sum_probs=58.4

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA   75 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~   75 (152)
                      .+++|+..|++||++||++..|||++|.+|..+|           +|++|+.+|++|++++|+|...+..+....
T Consensus        82 ~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg-----------~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          82 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFG-----------FLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             ccchhhhhhhccccccchhhhhhHHhHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3689999999999999999999999999999765           999999999999999999998887776653

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=5.2e-12  Score=90.41  Aligned_cols=62  Identities=21%  Similarity=0.258  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHhcCCCC--hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 031846            3 LDAISKLEEALMVSPNR--HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA   75 (152)
Q Consensus         3 eeAIs~leeAL~idP~~--~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~   75 (152)
                      ++||..|+++|+++|+.  .++||+||++|..+           ++|++|++||++||+++|+|..++..+....
T Consensus        53 ~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~-----------g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          53 RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL-----------KEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            45666666666665543  34566666666654           3899999999999999999988887776544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.25  E-value=1.5e-11  Score=89.98  Aligned_cols=72  Identities=19%  Similarity=0.234  Sum_probs=61.5

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchh
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL   80 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel   80 (152)
                      .+++||..|+++|++||++..+|+++|.+|..+|           ++++|+.+|++|++++|+|......+.......+-
T Consensus        79 ~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~-----------~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  147 (168)
T d1kt1a1          79 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN-----------EFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE  147 (168)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhcccchHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999865           99999999999999999998777776555444443


Q ss_pred             hHH
Q 031846           81 HME   83 (152)
Q Consensus        81 ~~e   83 (152)
                      +.+
T Consensus       148 ~~e  150 (168)
T d1kt1a1         148 HNE  150 (168)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.1e-11  Score=89.85  Aligned_cols=65  Identities=26%  Similarity=0.292  Sum_probs=58.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhc
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAK   76 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~k   76 (152)
                      .+++|+..|++||++||++..+|+++|.+|..+|           +|++|+.+|++|++++|+|...+..+....+
T Consensus        77 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g-----------~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          77 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN-----------DFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             hcccccchhhhhhhccccchhhhHHHHHHHHHhh-----------hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3789999999999999999999999999999865           9999999999999999999877776655543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.21  E-value=2.8e-11  Score=83.77  Aligned_cols=60  Identities=18%  Similarity=0.217  Sum_probs=53.8

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL   71 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaL   71 (152)
                      .+++|+..|+++|+++|++.++|++||.+|...           +++++|+.+|++|++++|+|..+...|
T Consensus        31 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~a~~~l   90 (112)
T d1hxia_          31 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN-----------EKDGLAIIALNHARMLDPKDIAVHAAL   90 (112)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhHHHHHHHhhhcccccccchhhhhhhhhhhhh-----------hhHHHhhcccccccccccccccchHHH
Confidence            378999999999999999999999999999875           499999999999999999997544443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=7.5e-11  Score=84.70  Aligned_cols=60  Identities=10%  Similarity=0.083  Sum_probs=54.6

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL   71 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaL   71 (152)
                      ++++|+..|++||++||++..||+++|.+|..+|           ++++|+++|++|+.++|+|...+..+
T Consensus        59 ~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g-----------~~~eA~~~~~~a~~~~p~~~~~~~~l  118 (159)
T d1a17a_          59 CYGYALGDATRAIELDKKYIKGYYRRAASNMALG-----------KFRAALRDYETVVKVKPHDKDAKMKY  118 (159)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            4789999999999999999999999999999765           99999999999999999998655444

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=2.1e-11  Score=87.60  Aligned_cols=54  Identities=15%  Similarity=0.178  Sum_probs=50.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|++||+++|++.++|++||.+|..+|           +|++|+.+|++|++++|++.
T Consensus        53 ~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~-----------~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          53 QPEQALADCRRALELDGQSVKAHFFLGQCQLEME-----------SYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCcccH
Confidence            4789999999999999999999999999999865           99999999999999999653

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=6.8e-11  Score=88.72  Aligned_cols=56  Identities=18%  Similarity=0.178  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ   68 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yr   68 (152)
                      +++|+..|+++|+++|++.+++++||.+|..+|           ++++|+++|++||+++|+|....
T Consensus       321 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~l~P~~~~a~  376 (388)
T d1w3ba_         321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG-----------KLQEALMHYKEAIRISPTFADAY  376 (388)
T ss_dssp             HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT-----------CCHHHHHHHHHHHTTCTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHH
Confidence            677888888888888888888888888877654           77888888888888888776443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.7e-10  Score=86.42  Aligned_cols=83  Identities=18%  Similarity=0.224  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHH---------------------------HhHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAK---------------------------EYFNKATLYF   54 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~---------------------------~~~ekA~~~F   54 (152)
                      +++|+..|+++|+++|++.+++++||.+|...|.    ..+|.                           +++++|+++|
T Consensus       253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  328 (388)
T d1w3ba_         253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS----VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY  328 (388)
T ss_dssp             HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHH
Confidence            6889999999999999999999999999987652    12222                           2566777777


Q ss_pred             HHHHHcCCCcH---------------------HHHHHHHHHhcCchhhHHHHHhh
Q 031846           55 QQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIHKHG   88 (152)
Q Consensus        55 qkAleldP~Ne---------------------~YrkaLe~~~kapel~~e~~~~~   88 (152)
                      ++|++++|++.                     .|++++++.+..++.|..+.+.+
T Consensus       329 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~  383 (388)
T d1w3ba_         329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL  383 (388)
T ss_dssp             HHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            77777777663                     25555555555555555555443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=1.1e-10  Score=86.41  Aligned_cols=65  Identities=12%  Similarity=0.121  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHhcCCCCh-HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcC
Q 031846            2 ILDAISKLEEALMVSPNRH-DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA   77 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~-dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~ka   77 (152)
                      +++||..|+++++.+|.++ |++|+||.+|+++|           +|++|..||+++|+++|+|...+...++.++.
T Consensus        54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklg-----------dy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~  119 (124)
T d2pqrb1          54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-----------EYSMAKRYVDTLFEHERNNKQVGALKSMVEDK  119 (124)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Confidence            5789999999999999876 89999999999865           99999999999999999999998888877654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=9.3e-11  Score=89.40  Aligned_cols=55  Identities=16%  Similarity=0.234  Sum_probs=51.5

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      .+++|+..|+++|++||++.++|++||.+|..+|           ++++|+.+|++|++++|+|..
T Consensus        34 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~   88 (323)
T d1fcha_          34 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE-----------QELLAISALRRCLELKPDNQT   88 (323)
T ss_dssp             CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------ChHHHHHHHHhhhcccccccc
Confidence            4789999999999999999999999999999764           999999999999999999963

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.5e-10  Score=88.22  Aligned_cols=70  Identities=19%  Similarity=0.157  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH--------------H
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL--------------Y   67 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~--------------Y   67 (152)
                      +++|+..|++++.++|+++++|++||.+|...|           ++++|+++|++|++++|+|..              |
T Consensus       188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  256 (323)
T d1fcha_         188 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGN-----------QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH  256 (323)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             Hhhhhcccccccccccccccchhhhhhcccccc-----------cchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCH
Confidence            689999999999999999999999999998764           999999999999999999862              5


Q ss_pred             HHHHHHHhcCchhhH
Q 031846           68 QKSLEVAAKAPELHM   82 (152)
Q Consensus        68 rkaLe~~~kapel~~   82 (152)
                      .++++.+.++.++++
T Consensus       257 ~~A~~~~~~al~l~p  271 (323)
T d1fcha_         257 REAVEHFLEALNMQR  271 (323)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC
Confidence            566666666666554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4e-10  Score=89.81  Aligned_cols=54  Identities=13%  Similarity=0.117  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|++||++||++..||+++|+++..++          .++++|+++|++|++++|+|.
T Consensus        59 ~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~----------~~~~eal~~~~~al~~~p~~~  112 (315)
T d2h6fa1          59 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ----------KDLHEEMNYITAIIEEQPKNY  112 (315)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----------CCHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhC----------cCHHHHHHHHHHHHHHHHhhh
Confidence            578888888999999998888888888887754          256777777777777777764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=4.6e-10  Score=84.12  Aligned_cols=53  Identities=9%  Similarity=0.032  Sum_probs=47.4

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|++.|++||++||++..+|+++|.+|..+|           +|++|++.|++||+..|.|
T Consensus        51 ~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g-----------~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          51 NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE-----------KYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTTTTC
T ss_pred             CchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc-----------cHHHHHHHHHHHHHhCccC
Confidence            4789999999999999999999999999998765           9999999999999887765

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=1.2e-09  Score=80.60  Aligned_cols=56  Identities=13%  Similarity=0.033  Sum_probs=51.8

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELY   67 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Y   67 (152)
                      .+++|+..|+++|+++|++.+++++||.+|..+|           ++++|+++|++|++++|++...
T Consensus        86 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~  141 (259)
T d1xnfa_          86 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG-----------RDKLAQDDLLAFYQDDPNDPFR  141 (259)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHh-----------hHHHHHHHHHHHHhhccccHHH
Confidence            3789999999999999999999999999999765           9999999999999999998743

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.8e-10  Score=80.42  Aligned_cols=56  Identities=9%  Similarity=0.107  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|+++|.++|++.+++||+|+++...+        ..+++++|+.+|+++|..+|++.
T Consensus        15 l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~--------~~~d~~~Ai~~l~~~l~~~~~~~   70 (122)
T d1nzna_          15 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTR--------YNDDIRKGIVLLEELLPKGSKEE   70 (122)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSS--------SHHHHHHHHHHHHHHTTTSCHHH
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc--------chHHHHHHHHHHHHHHhccCCch
Confidence            689999999999999999999999999997533        24689999999999999998763

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=9.1e-10  Score=82.44  Aligned_cols=51  Identities=12%  Similarity=0.131  Sum_probs=45.5

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|++.|++   ++|.++.+|||||++|..+|           +|++|+++|++||++||++.
T Consensus        20 d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g-----------~~~~A~~~~~kAl~ldp~~~   70 (192)
T d1hh8a_          20 DWKGALDAFSA---VQDPHSRICFNIGCMYTILK-----------NMTEAEKAFTRSINRDKHLA   70 (192)
T ss_dssp             CHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcC-----------CchhHHHHHHHHHHHhhhhh
Confidence            36788888875   57778999999999999865           99999999999999999996

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.86  E-value=2.2e-09  Score=77.69  Aligned_cols=75  Identities=21%  Similarity=0.241  Sum_probs=60.6

Q ss_pred             CHHHHHHHHHHHHh----------------cCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALM----------------VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~----------------idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|+..|++||+                ++|....+|.|||.+|.++|           +|++|+.+|++||+++|+|
T Consensus        42 ~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-----------~~~~Ai~~~~~al~~~p~~  110 (169)
T d1ihga1          42 NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS-----------DWQGAVDSCLEALEIDPSN  110 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTCTTC
T ss_pred             CHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhc-----------ccchhhhhhhhhhhhhhhh
Confidence            37889999999885                57888889999999999865           9999999999999999999


Q ss_pred             H---------------------HHHHHHHHHhcCchhhHHHHH
Q 031846           65 E---------------------LYQKSLEVAAKAPELHMEIHK   86 (152)
Q Consensus        65 e---------------------~YrkaLe~~~kapel~~e~~~   86 (152)
                      .                     .|++++++.+..++.+.++.+
T Consensus       111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~  153 (169)
T d1ihga1         111 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            5                     366666666666665555443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=5.8e-10  Score=88.83  Aligned_cols=53  Identities=4%  Similarity=0.025  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|+++|++||++..+|+++|.++..+|           ++++|+++|++|++++|+|.
T Consensus        94 ~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~-----------~~~eAl~~~~kal~~dp~n~  146 (315)
T d2h6fa1          94 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR-----------DPSQELEFIADILNQDAKNY  146 (315)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----------CCTTHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhc-----------cHHHHHHHHhhhhhhhhcch
Confidence            678888888888888888888888888888654           77888888888888888874

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.83  E-value=7.3e-10  Score=79.72  Aligned_cols=51  Identities=16%  Similarity=-0.005  Sum_probs=42.6

Q ss_pred             CHHHHHHHHHHHHhcCCCCh------------HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846            1 MILDAISKLEEALMVSPNRH------------DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP   62 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~------------dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP   62 (152)
                      .+++||..|++||+|+|+.+            .+|.|||++|..+|           +|++|+++|++||++.|
T Consensus        24 ~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg-----------~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1          24 EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR-----------SFDEALHSADKALHYFN   86 (156)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcC-----------ccchhhHhhhhhhhccc
Confidence            48999999999999999864            57999999999876           77777777777777654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.2e-08  Score=74.63  Aligned_cols=74  Identities=15%  Similarity=0.147  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHhcCCCCh---------------HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-
Q 031846            2 ILDAISKLEEALMVSPNRH---------------DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~---------------dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne-   65 (152)
                      +++|+..|++||++.|...               .+|.|||.+|.++|           +|++|+.+|++||+++|+|. 
T Consensus        29 ~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~-----------~~~~A~~~~~~al~~~p~~~~   97 (170)
T d1p5qa1          29 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ-----------AFSAAIESCNKALELDSNNEK   97 (170)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhh-----------hcccccchhhhhhhccccchh
Confidence            7899999999999988653               56788999999865           99999999999999999996 


Q ss_pred             --------------------HHHHHHHHHhcCchhhHHHHH
Q 031846           66 --------------------LYQKSLEVAAKAPELHMEIHK   86 (152)
Q Consensus        66 --------------------~YrkaLe~~~kapel~~e~~~   86 (152)
                                          .|++++++.+..+++..++.+
T Consensus        98 a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~  138 (170)
T d1p5qa1          98 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV  138 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                                356666666555555544433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.75  E-value=2.5e-08  Score=71.78  Aligned_cols=54  Identities=20%  Similarity=0.113  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHHhcCCCCh----------------HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVSPNRH----------------DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~----------------dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .|++|+..|++||++-|...                .+|.|||.+|..+|           ++++|+++|++||+++|+|
T Consensus        32 ~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~-----------~~~~Al~~~~~al~~~p~~  100 (153)
T d2fbna1          32 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK-----------DYPKAIDHASKVLKIDKNN  100 (153)
T ss_dssp             CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSTTC
T ss_pred             CHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhc-----------ccchhhhhhhccccccchh
Confidence            37899999999998776544                36889999999865           9999999999999999999


Q ss_pred             H
Q 031846           65 E   65 (152)
Q Consensus        65 e   65 (152)
                      .
T Consensus       101 ~  101 (153)
T d2fbna1         101 V  101 (153)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.74  E-value=8.1e-09  Score=71.00  Aligned_cols=47  Identities=23%  Similarity=0.116  Sum_probs=44.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAV   58 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAl   58 (152)
                      .+++|+..|++||+++|++.++|++||.+|..+           +++++|+++|+|.|
T Consensus        65 ~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~-----------g~~~~A~~~l~~~l  111 (112)
T d1hxia_          65 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNE-----------HNANAALASLRAWL  111 (112)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred             hHHHhhcccccccccccccccchHHHHHHHHHC-----------CCHHHHHHHHHHHh
Confidence            378999999999999999999999999999975           59999999999987

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.8e-09  Score=74.06  Aligned_cols=68  Identities=12%  Similarity=0.175  Sum_probs=55.7

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   72 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe   72 (152)
                      .+++|+..|++||+++|++..+++++|.+|..+|    +...+.++|++|+++|++++.++|+.+..+...+
T Consensus        53 ~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg----~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~~  120 (128)
T d1elra_          53 DYNKCRELCEKAIEVGRENREDYRQIAKAYARIG----NSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ  120 (128)
T ss_dssp             CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH----HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH----HHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            4789999999999999999988887777777666    2345677999999999999999998766554433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.66  E-value=3.6e-08  Score=71.58  Aligned_cols=75  Identities=16%  Similarity=0.164  Sum_probs=57.3

Q ss_pred             CHHHHHHHHHHHHhcCCCC---------------hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            1 MILDAISKLEEALMVSPNR---------------HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~---------------~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      .+++|+..|++||.+-|..               ..+|.|||.+|..++           +|++|+.+|++||+++|+|.
T Consensus        30 ~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~-----------~~~~Ai~~~~~al~l~p~~~   98 (168)
T d1kt1a1          30 KYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR-----------EYTKAVECCDKALGLDSANE   98 (168)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhh-----------hcccchhhhhhhhhcccchH
Confidence            4789999999999755443               245789999999865           99999999999999999995


Q ss_pred             ---------------------HHHHHHHHHhcCchhhHHHHH
Q 031846           66 ---------------------LYQKSLEVAAKAPELHMEIHK   86 (152)
Q Consensus        66 ---------------------~YrkaLe~~~kapel~~e~~~   86 (152)
                                           .|++++++.+..++.+.++.+
T Consensus        99 ~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  140 (168)
T d1kt1a1          99 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFM  140 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                                 355555655555555555443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=3.1e-08  Score=83.33  Aligned_cols=61  Identities=13%  Similarity=0.077  Sum_probs=56.2

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   72 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe   72 (152)
                      ++++|+..|++|++++|++..+|++||.+|...|           ++.+|+.+|.|||.++|.++..+.+|.
T Consensus       167 ~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~-----------~~~~A~~~y~ral~~~~~~~~a~~nL~  227 (497)
T d1ya0a1         167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG-----------DHLTTIFYYCRSIAVKFPFPAASTNLQ  227 (497)
T ss_dssp             CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            4789999999999999999999999999999765           999999999999999999988777764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.56  E-value=6.9e-08  Score=76.78  Aligned_cols=60  Identities=18%  Similarity=0.109  Sum_probs=53.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL   71 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaL   71 (152)
                      .+++|+..|+++|+.+|++.+++++||.+|...|           ++++|+..|+++++++|++......+
T Consensus        11 ~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G-----------~~e~A~~~l~~a~~l~P~~~~~~~~l   70 (264)
T d1zbpa1          11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDG-----------DFERADEQLMQSIKLFPEYLPGASQL   70 (264)
T ss_dssp             CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            3789999999999999999999999999999765           99999999999999999987544433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.55  E-value=2.8e-08  Score=77.19  Aligned_cols=59  Identities=20%  Similarity=0.152  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL   71 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaL   71 (152)
                      +++|+..|++++++||++..+|++||.+|...           +++++|+++|++|+++||++..|-..|
T Consensus       258 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------~~~~eA~~~~~~ai~ldP~~~~y~~~L  316 (334)
T d1dcea1         258 ELESCKELQELEPENKWCLLTIILLMRALDPL-----------LYEKETLQYFSTLKAVDPMRAAYLDDL  316 (334)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-----------GGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence            57899999999999999999999999999875           499999999999999999988776655

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=1.6e-07  Score=72.73  Aligned_cols=72  Identities=11%  Similarity=0.064  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH---------------
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL---------------   66 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~---------------   66 (152)
                      +++|+..|+++|+++|++..+++++|.++..++         +.++++|+.+|++|++++|.+..               
T Consensus        89 ~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  159 (334)
T d1dcea1          89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP---------EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA  159 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS---------SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhc---------cccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccc
Confidence            679999999999999999999999999998876         24799999999999999998852               


Q ss_pred             HHHHHHHHhcCchhhH
Q 031846           67 YQKSLEVAAKAPELHM   82 (152)
Q Consensus        67 YrkaLe~~~kapel~~   82 (152)
                      |.++++...++.++++
T Consensus       160 ~~~Al~~~~~~i~~~p  175 (334)
T d1dcea1         160 PAEELAFTDSLITRNF  175 (334)
T ss_dssp             HHHHHHHHHTTTTTTC
T ss_pred             cHHHHHHHHHHHHcCC
Confidence            5556666666665554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.39  E-value=3.2e-08  Score=70.86  Aligned_cols=52  Identities=13%  Similarity=0.056  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHhcCCC-----------ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMVSPN-----------RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~idP~-----------~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +++|+..++++|++.|+           ...+|+++|.+|..+|           ++++|+++|++|+++.|+.
T Consensus        71 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg-----------~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          71 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLG-----------RGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHC
T ss_pred             cchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHH-----------HHHHHHHHHHHHHHhhHHh
Confidence            68999999999987653           3458999999999875           9999999999999998855

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.30  E-value=1.4e-06  Score=64.98  Aligned_cols=55  Identities=18%  Similarity=0.106  Sum_probs=47.0

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHH-------HHcCCCcHH
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQA-------VDEEPSNEL   66 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkA-------leldP~Ne~   66 (152)
                      .+++|+..|+++|++||.+..+|++|+.+|...|           ++++|+.+|+++       |-++|+.++
T Consensus        82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~G-----------r~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSD-----------RQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            3789999999999999999999999999999876           666666666666       778998764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=1e-06  Score=64.15  Aligned_cols=53  Identities=15%  Similarity=0.026  Sum_probs=46.9

Q ss_pred             CHHHHHHHHHHHHhcCCCCh-----HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVSPNRH-----DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~-----dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      .+++|+..|++||+++|++.     .++++||.+|..+|           ++++|+.+|++|+++.|.+
T Consensus        27 ~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~a~~~~~~~   84 (366)
T d1hz4a_          27 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG-----------ELTRSLALMQQTEQMARQH   84 (366)
T ss_dssp             CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHhh
Confidence            47899999999999999985     48999999999754           9999999999999987754

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=4.6e-07  Score=76.06  Aligned_cols=45  Identities=24%  Similarity=0.327  Sum_probs=38.3

Q ss_pred             HhHHHHHHHHHHHHHcCCCcH---------------------HHHHHHHHHhcCchhhHHHHHhhh
Q 031846           45 EYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIHKHGL   89 (152)
Q Consensus        45 ~~~ekA~~~FqkAleldP~Ne---------------------~YrkaLe~~~kapel~~e~~~~~~   89 (152)
                      ++|++|+.+|++|++++|++.                     .|.++|.+.+.-+..+..|.+...
T Consensus       166 ~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            499999999999999999994                     488888888888888888887654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.6e-06  Score=57.87  Aligned_cols=55  Identities=20%  Similarity=0.313  Sum_probs=42.9

Q ss_pred             hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------------------HHHHHH
Q 031846           20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------------------LYQKSL   71 (152)
Q Consensus        20 ~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------------------~YrkaL   71 (152)
                      ++..|+||+++...|           +|++|+.+|++|+++.|+++                            .|+++|
T Consensus         5 addc~~lG~~~~~~g-----------~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL   73 (95)
T d1tjca_           5 AEDSFELGKVAYTEA-----------DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL   73 (95)
T ss_dssp             HHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHH
Confidence            567899999999865           99999999999999988652                            366666


Q ss_pred             HHHhcCchhhHHHH
Q 031846           72 EVAAKAPELHMEIH   85 (152)
Q Consensus        72 e~~~kapel~~e~~   85 (152)
                      ++.|..++.+.++.
T Consensus        74 ~l~P~~~~a~~Nl~   87 (95)
T d1tjca_          74 ELDPEHQRANGNLK   87 (95)
T ss_dssp             HHCTTCHHHHHHHH
T ss_pred             HhCcCCHHHHHHHH
Confidence            77666666655543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.07  E-value=3.8e-07  Score=70.32  Aligned_cols=53  Identities=11%  Similarity=-0.123  Sum_probs=44.1

Q ss_pred             CHHHHHHHHHHHHhcC------CCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            1 MILDAISKLEEALMVS------PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         1 mieeAIs~leeAL~id------P~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      ++++|++.|++|+++.      +.-..+|.++|++|.++|           ++++|+++|++|+++.+++
T Consensus        52 ~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~-----------~~~~A~~~~~~a~~~~~~~  110 (290)
T d1qqea_          52 ELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG-----------NSVNAVDSLENAIQIFTHR  110 (290)
T ss_dssp             CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC-----------CcHHHHHHHHHhhHHhhhc
Confidence            4789999999999983      334568999999999865           8999999999999887655

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.03  E-value=8.4e-06  Score=60.63  Aligned_cols=54  Identities=15%  Similarity=-0.028  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHhcCCCCh----------------------HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH
Q 031846            2 ILDAISKLEEALMVSPNRH----------------------DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD   59 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~----------------------dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle   59 (152)
                      +++|++.|.+||.+.+...                      +++.+++.++..+|           ++++|+.+++++|+
T Consensus        27 ~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g-----------~~~~Al~~~~~al~   95 (179)
T d2ff4a2          27 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACG-----------RASAVIAELEALTF   95 (179)
T ss_dssp             HHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CchHHHHHHHHHHH
Confidence            5799999999999987553                      67899999998765           99999999999999


Q ss_pred             cCCCcHH
Q 031846           60 EEPSNEL   66 (152)
Q Consensus        60 ldP~Ne~   66 (152)
                      ++|.|+.
T Consensus        96 ~~P~~e~  102 (179)
T d2ff4a2          96 EHPYREP  102 (179)
T ss_dssp             HSTTCHH
T ss_pred             hCCccHH
Confidence            9999984

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=1.3e-05  Score=61.46  Aligned_cols=53  Identities=11%  Similarity=0.048  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHhcCCC------ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846            2 ILDAISKLEEALMVSPN------RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~------~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne   65 (152)
                      +++|+..|++|+++.+.      ...++.++|.+|..+|           +|++|+++|++++.++|.+.
T Consensus       134 ~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g-----------~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG-----------QYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC-----------hHHHHHHHHHHHHHhCccch
Confidence            68999999999988544      3566999999999865           99999999999999999874

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=0.00016  Score=55.42  Aligned_cols=80  Identities=10%  Similarity=0.065  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHhcCCCChH-HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846            2 ILDAISKLEEALMVSPNRHD-TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------   65 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~d-A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------   65 (152)
                      +++|...|+++|+++|.++. +|..+++....           .+++++|..+|++|++..|.+.               
T Consensus       115 ~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~-----------~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~  183 (308)
T d2onda1         115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-----------AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK  183 (308)
T ss_dssp             HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-----------HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-----------cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcc
Confidence            46777778888887777655 44455666554           3588889999999999888763               


Q ss_pred             -------HHHHHHHHHhcCchhhHHHHHhhhccC
Q 031846           66 -------LYQKSLEVAAKAPELHMEIHKHGLGQQ   92 (152)
Q Consensus        66 -------~YrkaLe~~~kapel~~e~~~~~~~q~   92 (152)
                             .|.++++..+..+++.....+....+|
T Consensus       184 ~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g  217 (308)
T d2onda1         184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN  217 (308)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcC
Confidence                   466777777788888877777766555

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=8e-06  Score=59.31  Aligned_cols=52  Identities=15%  Similarity=-0.019  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHH------hcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846            1 MILDAISKLEEAL------MVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS   63 (152)
Q Consensus         1 mieeAIs~leeAL------~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~   63 (152)
                      .+++|+..|++++      ..+|....++++||.+|..+|           ++++|+++|++|+++.+.
T Consensus       266 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         266 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG-----------RKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHhhh
Confidence            3689999999998      456777889999999999765           999999999999998664

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=0.00052  Score=52.47  Aligned_cols=52  Identities=12%  Similarity=0.106  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHhc-CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846            2 ILDAISKLEEALMV-SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN   64 (152)
Q Consensus         2 ieeAIs~leeAL~i-dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N   64 (152)
                      +++|...|++||+. .|++...|..++..+.++|           ++++|...|+++|+++|.+
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~-----------~~~~a~~i~~~~l~~~~~~  132 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRM-----------KYEKVHSIYNRLLAIEDID  132 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTSSSSC
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcc-----------cHHHHHHHHHHHHHHhcCC
Confidence            57899999999974 8888888888898887754           8999999999999999976

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.92  E-value=0.00038  Score=51.29  Aligned_cols=52  Identities=12%  Similarity=0.109  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP   62 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP   62 (152)
                      +++|+..|++|.+.  .++.|+|+||..|.. |.-      ...++++|+++|++|.++..
T Consensus       198 ~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~-G~g------~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         198 FKEALARYSKACEL--ENGGGCFNLGAMQYN-GEG------VTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHT-TSS------SSCCSTTHHHHHHHHHHHTC
T ss_pred             hhhhhhhHhhhhcc--cCHHHHHHHHHHHHc-CCC------CccCHHHHHHHHHHHHHCcC
Confidence            45566666666655  355666666666653 210      01256666666666666553

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.73  E-value=0.004  Score=45.56  Aligned_cols=51  Identities=18%  Similarity=0.192  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE   61 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld   61 (152)
                      +++|+..|++|.+.  ++.+|+++||.+|..-.-+.       .++++|..+|+++.+.+
T Consensus        18 ~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~-------~d~~~a~~~~~~a~~~~   68 (265)
T d1ouva_          18 FTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVE-------KNLKKAASFYAKACDLN   68 (265)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC-------CCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcc-------hhHHHHHHhhccccccc
Confidence            68999999999875  58999999999997522122       35555666666655543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.70  E-value=0.0046  Score=42.22  Aligned_cols=57  Identities=18%  Similarity=0.175  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELY   67 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Y   67 (152)
                      .++|+..|+++.+.  ++.+|.++||..|.. |..+      ..++++|+++|++|.+....+..|
T Consensus        39 ~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~-g~~~------~~d~~~A~~~~~~aa~~g~~~a~~   95 (133)
T d1klxa_          39 KQKLFQYLSKACEL--NSGNGCRFLGDFYEN-GKYV------KKDLRKAAQYYSKACGLNDQDGCL   95 (133)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-CSSS------CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhhhhcc--cchhhhhhHHHhhhh-cccc------chhhHHHHHHHhhhhccCcchHHH
Confidence            57899999999865  689999999999874 2211      247899999999999987655433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.32  E-value=0.0027  Score=49.54  Aligned_cols=32  Identities=13%  Similarity=-0.011  Sum_probs=29.5

Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHh
Q 031846            1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTS   32 (152)
Q Consensus         1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~   32 (152)
                      .+++|+..|+++++++|++..++.+++.++..
T Consensus        45 ~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a   76 (264)
T d1zbpa1          45 DFERADEQLMQSIKLFPEYLPGASQLRHLVKA   76 (264)
T ss_dssp             CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            37899999999999999999999999999864

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.04  E-value=0.096  Score=35.23  Aligned_cols=57  Identities=16%  Similarity=0.057  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELY   67 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Y   67 (152)
                      +++|+..|+++.+.  .+.+|.++||..|.. |.-      -..++++|+.+|++|.++...+..|
T Consensus        75 ~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~-G~g------v~~d~~~A~~~~~~Aa~~G~~~A~~  131 (133)
T d1klxa_          75 LRKAAQYYSKACGL--NDQDGCLILGYKQYA-GKG------VVKNEKQAVKTFEKACRLGSEDACG  131 (133)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-TSS------SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHhhhhcc--CcchHHHHHHHHHHc-CCc------cCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            57899999999875  679999999999875 211      1248999999999999987655444

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.32  E-value=0.077  Score=35.58  Aligned_cols=66  Identities=11%  Similarity=0.109  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH----HHHHHHHHhcC
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL----YQKSLEVAAKA   77 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~----YrkaLe~~~ka   77 (152)
                      ...|++.+.+|++.|-..                   +-.+|...|.+|+++|..++..+|+...    -++..+....|
T Consensus        12 ~~~A~~l~~~Av~~D~~g-------------------~y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eYl~RA   72 (93)
T d1wfda_          12 STAAVAVLKRAVELDAES-------------------RYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRA   72 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence            456777888887655433                   1134556888888888999998987663    33444555555


Q ss_pred             chhhHHHHH
Q 031846           78 PELHMEIHK   86 (152)
Q Consensus        78 pel~~e~~~   86 (152)
                      -+|...|.+
T Consensus        73 E~LK~~l~~   81 (93)
T d1wfda_          73 ENIKKYLDQ   81 (93)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555444433

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.06  E-value=0.13  Score=33.16  Aligned_cols=46  Identities=22%  Similarity=0.294  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846            2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL   66 (152)
Q Consensus         2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~   66 (152)
                      ++.|++...+|++.|-..                   +-.+|...|.+|+++|..++..+|+|+.
T Consensus         8 l~~A~~l~~~Av~~D~~~-------------------~y~~A~~~Y~~a~~~l~~~l~~e~~~~~   53 (77)
T d1wr0a1           8 LQKAIDLASKAAQEDKAG-------------------NYEEALQLYQHAVQYFLHVVKYEAQGDK   53 (77)
T ss_dssp             HHHHHHHHHHHHHHHHTT-------------------CCSSHHHHHHHHHHHHHHHHHHSCCTGG
T ss_pred             HHHHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence            577888888888766443                   1123556888899999999998887753

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.51  E-value=0.94  Score=31.88  Aligned_cols=67  Identities=6%  Similarity=-0.080  Sum_probs=47.5

Q ss_pred             HHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------HHHHHHH
Q 031846            8 KLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------LYQKSLE   72 (152)
Q Consensus         8 ~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------~YrkaLe   72 (152)
                      .|++.+.-+|. .++-|+.+.++....        ..++.++|+.+|++++..+|++.               .|.++++
T Consensus        24 q~~~e~~~~~s-~qt~F~YAw~Lv~S~--------~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~   94 (124)
T d2pqrb1          24 QVVSEGGPTAT-IQSRFNYAWGLIKST--------DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR   94 (124)
T ss_dssp             HHHHTTGGGSC-HHHHHHHHHHHHHSS--------CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHhCCCCC-cchHHHHHHHHHcCC--------cHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHH
Confidence            34444433444 689999999987542        25799999999999999999875               2666666


Q ss_pred             HHhcCchhhHH
Q 031846           73 VAAKAPELHME   83 (152)
Q Consensus        73 ~~~kapel~~e   83 (152)
                      .+.++.+..++
T Consensus        95 ~~~~~L~ieP~  105 (124)
T d2pqrb1          95 YVDTLFEHERN  105 (124)
T ss_dssp             HHHHHHHHCTT
T ss_pred             HHHHHHccCCC
Confidence            66666555443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.10  E-value=0.68  Score=31.03  Aligned_cols=34  Identities=32%  Similarity=0.370  Sum_probs=24.2

Q ss_pred             HHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 031846           41 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA   75 (152)
Q Consensus        41 ~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~   75 (152)
                      +||.+.+++|.+|+..|+++ |.++....+|++--
T Consensus        25 deAIech~kA~~yl~eA~kl-t~s~~~l~SLqLQ~   58 (83)
T d2crba1          25 EEAISCHRKATTYLSEAMKL-TESEQAHLSLELQR   58 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            56666666666667777887 77888777886643