Citrus Sinensis ID: 031858

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFCGFGGRGGGSSFGFGTGSDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMPRSRGSSFGGGNRSGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFGNRISY
Secondary Structure (PSIPRED)
ccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mnrpgdwncrscqhlnfqrrdscqrcgdprssgdfcgfggrgggssfgfgtgsdvrpgdwycsagncgahnfasrsscfkcgafkddvagggfdcdmprsrgssfgggnrsgwksgdwictrsgcnehnfasrmecfrcnaprdfgnrisy
Flexible Loop (DISEMBL)
mnrpgdwncrscqHLNFQRRDSCQRCGDPRSSGDFCGFGGRGGGSSFGFGTGSDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMPrsrgssfgggnrsgwksgDWICTRSGCNEHNFASRMECfrcnaprdfgnrisy
Low Complexity Region (SEG)
MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRssgdfcgfggrgggssfgfgtgsDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMPrsrgssfgggnrsgWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFGNRISY
Disordered region (IsUnstruct)
*******NCRSCQHLNFQ***************DFCGFGGRGGGSSFGFGTGSDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCD**************SGWKSGDWICTRSGCNEHNFASRMECFRCNA**********
Disordered Region (DISOPRED)
*NRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFCGFGGRGGGSSFGFGTGSDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMPRSRGSSFGGGNRSGWKSGDWICTRSGCNEHNFASRMECFR*************
Disordered Region (DISEMBL)
MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFCGFGGRGGGSSFGFGTGSDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMPRSRGSSFGGGNRSGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFGNRISY
Disordered Region (DISPRO)
****GDWNCRSCQHLNFQRRDSCQRCGD****************************PGDWYCSAGNCGAHNFASRSSCFKCGAF******************************SGDWICTRSGCNEHNFASRMECFRCNA**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFCGFGGRGGGSSFGFGTGSDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMPRSRGSSFGGGNRSGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFGNRISY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
O13801	604	Uncharacterized RNA-bindi	yes	no	0.854	0.213	0.319	2e-07
Q19QU3	328	Zinc finger Ran-binding d	yes	no	0.536	0.246	0.354	6e-06
Q5R580	320	Zinc finger Ran-binding d	yes	no	0.536	0.253	0.354	8e-06
O35986	330	Zinc finger Ran-binding d	yes	no	0.536	0.245	0.354	8e-06
Q9R020	330	Zinc finger Ran-binding d	yes	no	0.536	0.245	0.354	8e-06
O95218	330	Zinc finger Ran-binding d	yes	no	0.536	0.245	0.354	9e-06
Q5ZLX5	334	Zinc finger Ran-binding d	yes	no	0.536	0.242	0.354	1e-05
Q01844	656	RNA-binding protein EWS O	no	no	0.284	0.065	0.5	0.0005
Q61545	655	RNA-binding protein EWS O	no	no	0.284	0.065	0.5	0.0006

>sp|O13801|YE04_SCHPO Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.04c PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 58/144 (40%), Gaps = 15/144 (10%)

Query: 3   RPGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFCGFGGRGGGSSFGFGTGSDVRPGDWYC 62
           RPGDWNC  C   NFQRR SC RC  P  +      G       F +G            
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGN----------- 391

Query: 63  SAGNCGAH---NFASRSSCFKCGAFKDDVAGGGFDCDMPRSRGSSFGGGNRSGWKSGDWI 119
           S GN  +H   N+            + D+     +  +     S   GGN   +++GDW 
Sbjct: 392 SYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGN-VPFRAGDWK 450

Query: 120 CTRSGCNEHNFASRMECFRCNAPR 143
           C   GC  HNFA  + C RC A R
Sbjct: 451 CGSEGCGYHNFAKNVCCLRCGASR 474

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q19QU3|ZRAB2_PIG Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa GN=ZRANB2 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 55  VRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVA----GGGFDCDMPRSRGSSFGGGNR 110
           V  GDW C    CG  NFA R+SC +CG  K   A     GG +       G +    +R
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEI------GKTLAEKSR 61

Query: 111 SGWKSGDWICTRSGCNEHNFASRMECFRCNAPR 143
             + + DW C    C+  N+A R EC  CN P+
Sbjct: 62  GLFSANDWQC--KTCSNVNWARRSECNMCNTPK 92

Splice factor required for alternative splicing of TRA2B/SFRS10 transcripts. May interfere with constitutive 5'-splice site selection.

Sus scrofa (taxid: 9823)

>sp|Q5R580|ZRAB2_PONAB Zinc finger Ran-binding domain-containing protein 2 OS=Pongo abelii GN=ZRANB2 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 55  VRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVA----GGGFDCDMPRSRGSSFGGGNR 110
           V  GDW C    CG  NFA R+SC +CG  K   A     GG +       G +    +R
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEI------GKTLAEKSR 61

Query: 111 SGWKSGDWICTRSGCNEHNFASRMECFRCNAPR 143
             + + DW C    C+  N+A R EC  CN P+
Sbjct: 62  GLFSANDWQC--KTCSNVNWARRSECNMCNTPK 92

Splice factor required for alternative splicing of TRA2B/SFRS10 transcripts. May interfere with constitutive 5'-splice site selection.

Pongo abelii (taxid: 9601)

>sp|O35986|ZRAB2_RAT Zinc finger Ran-binding domain-containing protein 2 OS=Rattus norvegicus GN=Zranb2 PE=2 SV=2

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 55  VRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVA----GGGFDCDMPRSRGSSFGGGNR 110
           V  GDW C    CG  NFA R+SC +CG  K   A     GG +       G +    +R
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEI------GKTLAEKSR 61

Query: 111 SGWKSGDWICTRSGCNEHNFASRMECFRCNAPR 143
             + + DW C    C+  N+A R EC  CN P+
Sbjct: 62  GLFSANDWQC--KTCSNVNWARRSECNMCNTPK 92

Splice factor required for alternative splicing of TRA2B/SFRS10 transcripts. May interfere with constitutive 5'-splice site selection.

Rattus norvegicus (taxid: 10116)

>sp|Q9R020|ZRAB2_MOUSE Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus GN=Zranb2 PE=1 SV=2

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 55  VRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVA----GGGFDCDMPRSRGSSFGGGNR 110
           V  GDW C    CG  NFA R+SC +CG  K   A     GG +       G +    +R
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEI------GKTLAEKSR 61

Query: 111 SGWKSGDWICTRSGCNEHNFASRMECFRCNAPR 143
             + + DW C    C+  N+A R EC  CN P+
Sbjct: 62  GLFSANDWQC--KTCSNVNWARRSECNMCNTPK 92

Splice factor required for alternative splicing of TRA2B/SFRS10 transcripts. May interfere with constitutive 5'-splice site selection.

Mus musculus (taxid: 10090)

>sp|O95218|ZRAB2_HUMAN Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens GN=ZRANB2 PE=1 SV=2

 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 55  VRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVA----GGGFDCDMPRSRGSSFGGGNR 110
           V  GDW C    CG  NFA R+SC +CG  K   A     GG +       G +    +R
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEI------GKTLAEKSR 61

Query: 111 SGWKSGDWICTRSGCNEHNFASRMECFRCNAPR 143
             + + DW C    C+  N+A R EC  CN P+
Sbjct: 62  GLFSANDWQC--KTCSNVNWARRSECNMCNTPK 92

Splice factor required for alternative splicing of TRA2B/SFRS10 transcripts. May interfere with constitutive 5'-splice site selection.

Homo sapiens (taxid: 9606)

>sp|Q5ZLX5|ZRAB2_CHICK Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus GN=ZRANB2 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 55  VRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVA----GGGFDCDMPRSRGSSFGGGNR 110
           V  GDW C    CG  NFA R+SC +CG  K   A     GG +       G +    +R
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEI------GKTLAEKSR 61

Query: 111 SGWKSGDWICTRSGCNEHNFASRMECFRCNAPR 143
             + + DW C    C   N+A R EC  CN P+
Sbjct: 62  GLFSANDWQC--KTCGNVNWARRSECNMCNTPK 92

May regulate alternative splicing by interfering with constitutive 5'-splice site selection.

Gallus gallus (taxid: 9031)

>sp|Q01844|EWS_HUMAN RNA-binding protein EWS OS=Homo sapiens GN=EWSR1 PE=1 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 100 SRGSSFGGGNRSGWKSGDWICTRSGCNEHNFASRMECFRCNAPR 143
           SRG+  GGGN    ++GDW C   GC   NFA R EC +C AP+
Sbjct: 505 SRGNPSGGGNVQ-HRAGDWQCPNPGCGNQNFAWRTECNQCKAPK 547

Might normally function as a repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

Homo sapiens (taxid: 9606)

>sp|Q61545|EWS_MOUSE RNA-binding protein EWS OS=Mus musculus GN=Ewsr1 PE=1 SV=2

 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 100 SRGSSFGGGNRSGWKSGDWICTRSGCNEHNFASRMECFRCNAPR 143
           SRG+  GGGN    ++GDW C   GC   NFA R EC +C AP+
Sbjct: 504 SRGNPSGGGNVQ-HRAGDWQCPNPGCGNQNFAWRTECNQCKAPK 546

Might function as a repressor.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
224073746	151	predicted protein [Populus trichocarpa]	0.986	0.986	0.797	8e-59
255553093	152	protein with unknown function [Ricinus c	0.986	0.980	0.798	6e-57
74027078	139	zinc finger protein-like protein [Gossyp	0.920	1.0	0.761	4e-54
15232662	164	Ran BP2/NZF zinc finger-like protein [Ar	0.980	0.902	0.682	2e-51
21595771	164	putative zinc finger protein [Arabidopsi	0.980	0.902	0.682	3e-51
224058693	151	predicted protein [Populus trichocarpa]	0.986	0.986	0.758	9e-51
301133552	163	Ran-binding zinc finger protein [Brassic	0.953	0.883	0.697	2e-50
297830150	164	zinc finger (Ran-binding) family protein	0.986	0.908	0.674	1e-49
224141875	155	predicted protein [Populus trichocarpa]	1.0	0.974	0.696	3e-49
351725597	144	uncharacterized protein LOC100499847 [Gl	0.940	0.986	0.743	5e-49

>gi|224073746|ref|XP_002304153.1| predicted protein [Populus trichocarpa] gi|222841585|gb|EEE79132.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (589), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 122/153 (79%), Positives = 130/153 (84%), Gaps = 4/153 (2%)

Query: 1   MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFCGFGGRGGGSSFGFGTGSDVRPGDW 60
           M+RPGDWNCRSCQHLNFQRRDSCQRCGDPR+ GD  GFG RGG S+FGF TGSDVRPGDW
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGDPRTGGDLGGFGARGG-SAFGF-TGSDVRPGDW 58

Query: 61  YCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMPRSRG--SSFGGGNRSGWKSGDW 118
           YC+AGNCGAHNFASRSSCFKCG +K+  + GGFD D  RSRG   S GG NRSGWKSGDW
Sbjct: 59  YCTAGNCGAHNFASRSSCFKCGVYKEIDSSGGFDSDFSRSRGFGGSTGGSNRSGWKSGDW 118

Query: 119 ICTRSGCNEHNFASRMECFRCNAPRDFGNRISY 151
           ICTR GCNEHNFASRMECF+CNAPRD  N  SY
Sbjct: 119 ICTRWGCNEHNFASRMECFKCNAPRDLSNTTSY 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553093|ref|XP_002517589.1| protein with unknown function [Ricinus communis] gi|223543221|gb|EEF44753.1| protein with unknown function [Ricinus communis]

 Score =  224 bits (572), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 123/154 (79%), Positives = 130/154 (84%), Gaps = 5/154 (3%)

Query: 1   MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFCGFGG-RGGGSSFGFGTGSDVRPGD 59
           M+RPGDWNCRSCQHLNFQRRDSCQRCGD RS G   G  G R  GSSFGF TGSDVRPGD
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGDSRSGGGDFGGFGGRSVGSSFGFSTGSDVRPGD 60

Query: 60  WYCSAGNCGAHNFASRSSCFKCGAFKDD-VAGGGFDCDMPRSRGSSFGGG-NRSGWKSGD 117
           WYC+AGNCGAHNFASRSSCFKCG +KDD  A  GFD D+PRSRG  FGGG NRSGWKSGD
Sbjct: 61  WYCTAGNCGAHNFASRSSCFKCGVYKDDSAAATGFDSDIPRSRG--FGGGSNRSGWKSGD 118

Query: 118 WICTRSGCNEHNFASRMECFRCNAPRDFGNRISY 151
           WICTR GCNEHNFASRMECF+CNAPR+  NR +Y
Sbjct: 119 WICTRWGCNEHNFASRMECFKCNAPRELSNRTTY 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|74027078|gb|AAZ94630.1| zinc finger protein-like protein [Gossypium hirsutum]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 115/151 (76%), Positives = 125/151 (82%), Gaps = 12/151 (7%)

Query: 1   MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFCGFGGRGGGSSFGFGTGSDVRPGDW 60
           M+RPGDWNCRSCQHLNFQRRD+CQRCG+ R       +G R G S+FGF  GSDVRPGDW
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDNCQRCGESR-------YGVRVG-STFGFTAGSDVRPGDW 52

Query: 61  YCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMPRSRGSSFGGGNRSGWKSGDWIC 120
           YC+AGNCG HNFASRS+CF CGAFKD+ AGG FD DM RSRG    GGNRSGWKSGDWIC
Sbjct: 53  YCTAGNCGTHNFASRSTCFNCGAFKDESAGG-FDLDMSRSRGF---GGNRSGWKSGDWIC 108

Query: 121 TRSGCNEHNFASRMECFRCNAPRDFGNRISY 151
           TR GCNEHNFASRMECFRC+APR+F NR SY
Sbjct: 109 TRLGCNEHNFASRMECFRCSAPREFNNRTSY 139

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232662|ref|NP_188189.1| Ran BP2/NZF zinc finger-like protein [Arabidopsis thaliana] gi|11994340|dbj|BAB02299.1| zinc finger protein-like; Ser/Thr protein kinase-like protein [Arabidopsis thaliana] gi|89274153|gb|ABD65597.1| At3g15680 [Arabidopsis thaliana] gi|332642192|gb|AEE75713.1| Ran BP2/NZF zinc finger-like protein [Arabidopsis thaliana]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 121/167 (72%), Gaps = 19/167 (11%)

Query: 1   MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSG------DFCGFGGRGGGSSFGFGTGSD 54
           M+RPGDWNCRSC HLNFQRRDSCQRCGD RS        DF  FGGR   S+FGF TGSD
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAM-SAFGFTTGSD 59

Query: 55  VRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAG----------GGFDCDMPRSRGSS 104
           VRPGDWYC+ GNCG HNFASRS+CFKCG FKD+               FD D+ RSR   
Sbjct: 60  VRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVP- 118

Query: 105 FGGGNRSGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFGNRISY 151
            G G RS WKSGDWICTR GCNEHNFASRMECFRCNAPRDF NR S+
Sbjct: 119 -GNGGRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRDFSNRTSF 164

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21595771|gb|AAM66130.1| putative zinc finger protein [Arabidopsis thaliana]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 120/167 (71%), Gaps = 19/167 (11%)

Query: 1   MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSG------DFCGFGGRGGGSSFGFGTGSD 54
           M+RPGDWNCRSC HLNFQRRDSCQRCGD RS        DF  FGGR   S FGF TGSD
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAM-SVFGFTTGSD 59

Query: 55  VRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAG----------GGFDCDMPRSRGSS 104
           VRPGDWYC+ GNCG HNFASRS+CFKCG FKD+               FD D+ RSR   
Sbjct: 60  VRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVP- 118

Query: 105 FGGGNRSGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFGNRISY 151
            G G RS WKSGDWICTR GCNEHNFASRMECFRCNAPRDF NR S+
Sbjct: 119 -GNGGRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRDFSNRTSF 164

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058693|ref|XP_002299606.1| predicted protein [Populus trichocarpa] gi|118483479|gb|ABK93638.1| unknown [Populus trichocarpa] gi|222846864|gb|EEE84411.1| predicted protein [Populus trichocarpa]

 Score =  204 bits (519), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 116/153 (75%), Positives = 123/153 (80%), Gaps = 4/153 (2%)

Query: 1   MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFCGFGGRGGGSSFGFGTGSDVRPGDW 60
           MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRS+GD    G  G G S    TGSDVRPGDW
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRSAGD--FGGFGGRGGSSLGFTGSDVRPGDW 58

Query: 61  YCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMPRSRGSSFGGG--NRSGWKSGDW 118
           YC+AGNCGAHNFASRSSCFKCG +K+  + GGFD D  R+RG     G  NRSGWKSGDW
Sbjct: 59  YCTAGNCGAHNFASRSSCFKCGVYKEMDSAGGFDSDFSRTRGFGGSTGGGNRSGWKSGDW 118

Query: 119 ICTRSGCNEHNFASRMECFRCNAPRDFGNRISY 151
           ICTR GCNEHNFASRMECF+CNAPRD  NR SY
Sbjct: 119 ICTRWGCNEHNFASRMECFKCNAPRDLSNRTSY 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301133552|gb|ADK63398.1| Ran-binding zinc finger protein [Brassica rapa]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 113/162 (69%), Positives = 120/162 (74%), Gaps = 18/162 (11%)

Query: 1   MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSG------DFCGFGGRGGGSSFGFGTGSD 54
           M+RPGDWNCRSC HLNFQRRDSCQRCGD RS        DF GFGGR   S+FGF TGSD
Sbjct: 1   MSRPGDWNCRSCTHLNFQRRDSCQRCGDFRSGASGVSGLDFGGFGGRAM-SAFGFTTGSD 59

Query: 55  VRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAG---------GGFDCDMPRSRGSSF 105
           VRPGDWYC+ G+CG HNFASRS+CFKCG FKD+  G           FD D+ RSR S  
Sbjct: 60  VRPGDWYCTVGSCGTHNFASRSTCFKCGTFKDESTGGGGGGVGGPAVFDTDLMRSRVS-- 117

Query: 106 GGGNRSGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFGN 147
           G   RS WKSGDWICTR GCNEHNFASRMECFRCNAPRDF N
Sbjct: 118 GNAGRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRDFSN 159

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830150|ref|XP_002882957.1| zinc finger (Ran-binding) family protein [Arabidopsis lyrata subsp. lyrata] gi|297328797|gb|EFH59216.1| zinc finger (Ran-binding) family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 112/166 (67%), Positives = 119/166 (71%), Gaps = 17/166 (10%)

Query: 1   MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRS-----SGDFCGFGGRGGGSSFGFGTGSDV 55
           MNRPGDWNCRSC HLNFQRRDSCQRCGD RS      G   G  G    S+FGF TGSDV
Sbjct: 1   MNRPGDWNCRSCNHLNFQRRDSCQRCGDSRSGPGGVGGLDFGGFGGRAMSAFGFTTGSDV 60

Query: 56  RPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAG----------GGFDCDMPRSRGSSF 105
           RPGDWYC+ GNCG HNFASRS+CFKCG FKD+               FD D+ RSR  S 
Sbjct: 61  RPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADVMRSRVPSN 120

Query: 106 GGGNRSGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFGNRISY 151
           GG  RS WKSGDWICTR GCNEHNFASR+ECFRCNAPRDF NR S+
Sbjct: 121 GG--RSSWKSGDWICTRIGCNEHNFASRIECFRCNAPRDFSNRTSF 164

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141875|ref|XP_002324286.1| predicted protein [Populus trichocarpa] gi|222865720|gb|EEF02851.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 108/155 (69%), Positives = 116/155 (74%), Gaps = 4/155 (2%)

Query: 1   MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFCGFGGRGGGSSFGFGTGSDVRPGDW 60
           M+RPGDWNCRSCQHLNFQRRDSCQRCGDPR           G        TG DVRPGDW
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGDPRPGERDHYGSFGGRSGGSFGFTGPDVRPGDW 60

Query: 61  YCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMPRSRGSSFGGG---NRSGWKSGD 117
           YCS GNCGAHNFASRSSCFKCG  KD+ +GGG D D+   RG  FGGG   +RS WKSGD
Sbjct: 61  YCSVGNCGAHNFASRSSCFKCGMSKDESSGGGLDADISWMRGYGFGGGSASSRSNWKSGD 120

Query: 118 WICTRSGCNEHNFASRMECFRCNAPRDFG-NRISY 151
           WICTRSGCNEHNFASR EC+RCNAPR+ G N+ SY
Sbjct: 121 WICTRSGCNEHNFASRTECYRCNAPRESGSNKSSY 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725597|ref|NP_001236842.1| uncharacterized protein LOC100499847 [Glycine max] gi|255627109|gb|ACU13899.1| unknown [Glycine max]

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 107/144 (74%), Positives = 115/144 (79%), Gaps = 2/144 (1%)

Query: 1   MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFCGFGGRGGGSSFGFGTGSDVRPGDW 60
           M+RPGDWNCRSCQHLNFQRRDSCQRCGD +        G  G G S    TGSDVRPGDW
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGDAKYGDRVDFGGFGGRGGSSFGLTGSDVRPGDW 60

Query: 61  YCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMPRSRGSSFGGGNRSGWKSGDWIC 120
           YC+A NCGAHNFASRSSCFKCGAFKDD+AG     D+ RSR  +FGG  R GWKSGDWIC
Sbjct: 61  YCAAANCGAHNFASRSSCFKCGAFKDDLAGSYNSSDILRSR--AFGGSGRPGWKSGDWIC 118

Query: 121 TRSGCNEHNFASRMECFRCNAPRD 144
           TRSGCNEHNFASRMECF+C+APRD
Sbjct: 119 TRSGCNEHNFASRMECFKCSAPRD 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
TAIR|locus:2093317	164	AT3G15680 [Arabidopsis thalian	0.986	0.908	0.584	3.2e-49
TAIR|locus:1006230021	138	AT2G26695 [Arabidopsis thalian	0.867	0.949	0.408	1e-29
TAIR|locus:2179479	170	AT5G25490 [Arabidopsis thalian	0.649	0.576	0.539	1.3e-27
TAIR|locus:2827841	268	AT2G17975 [Arabidopsis thalian	0.198	0.111	0.562	2e-20
POMBASE|SPAC17H9.04c	604	SPAC17H9.04c "RNA-binding prot	0.178	0.044	0.666	7.1e-19
ASPGD|ASPL0000012537	609	AN8055 [Emericella nidulans (t	0.569	0.141	0.355	1.9e-09
UNIPROTKB|G4MV21	629	MGG_07327 "Asparagine-rich pro	0.178	0.042	0.629	9.5e-12
SGD|S000002326	719	NRP1 "Putative RNA binding pro	0.178	0.037	0.666	1.3e-11
CGD|CAL0001753	763	NRP1 [Candida albicans (taxid:	0.158	0.031	0.666	3.4e-10
UNIPROTKB|Q5A791	763	NRP1 "Putative uncharacterized	0.158	0.031	0.666	3.4e-10

TAIR|locus:2093317 AT3G15680 [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 97/166 (58%), Positives = 103/166 (62%)

Query:     1 MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRXX-----XXXXXXXXXXXXXXXXXXXXXDV 55
             M+RPGDWNCRSC HLNFQRRDSCQRCGD R                            DV
Sbjct:     1 MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDV 60

Query:    56 RPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDV-AGGG---------FDCDMPXXXXXXX 105
             RPGDWYC+ GNCG HNFASRS+CFKCG FKD+  AGGG         FD D+        
Sbjct:    61 RPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADI--MRSRVP 118

Query:   106 XXXXXXXWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFGNRISY 151
                    WKSGDWICTR GCNEHNFASRMECFRCNAPRDF NR S+
Sbjct:   119 GNGGRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRDFSNRTSF 164

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:1006230021 AT2G26695 [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 58/142 (40%), Positives = 77/142 (54%)

Query:     5 GDWNCRSCQHLNFQRRDSCQRCGDPRXXXXXXXXXXXXXXXXXXXXXXXDVRPGDWYCSA 64
             GDW C +CQH NF++R+SCQ+CG P+                       +V  GDWYC A
Sbjct:     6 GDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNRT---------EVMAGDWYCGA 56

Query:    65 GNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMPXXXXXXXXXXXXXXWKSGDWICTRSG 124
              NCG+HN+ASR+SC++CG  K +     +   M               WK+GDW+C R G
Sbjct:    57 LNCGSHNYASRTSCYRCGMIKVEYTEQYYGAQM--VAYGNDGAACPPGWKTGDWVCPRVG 114

Query:   125 CNEHNFASRMECFRCNAPRDFG 146
             C  HN+ASR ECF+C   RD+G
Sbjct:   115 CGVHNYASRAECFKCKTTRDYG 136

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2179479 AT5G25490 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 61/113 (53%), Positives = 69/113 (61%)

Query:    54 DVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDD------VAGGGF-DCDM-PXX----- 100
             DVRPGDWYC+ G+CG HNFA+RSSCFKCGA KD+       A  GF D ++ P       
Sbjct:    58 DVRPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGF 117

Query:   101 --XXXXXXXXXXXXWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFGNRISY 151
                           WKSGDWIC RSGCNEHNFASR ECFRCNAP++      Y
Sbjct:   118 GGSSSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKELATEPPY 170

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2827841 AT2G17975 [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query:   113 WKSGDWICTRSGCNEHNFASRMECFRCNAPRD 144
             W+ GDW+CT   C  HN+ASR EC RC   RD
Sbjct:   227 WRDGDWMCTN--CKNHNYASRAECNRCKTTRD 256

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

POMBASE|SPAC17H9.04c SPAC17H9.04c "RNA-binding protein" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 105 (42.0 bits), Expect = 7.1e-19, Sum P(3) = 7.1e-19
 Identities = 18/27 (66%), Positives = 18/27 (66%)

Query:     3 RPGDWNCRSCQHLNFQRRDSCQRCGDP 29
             RPGDWNC  C   NFQRR SC RC  P
Sbjct:   343 RPGDWNCPMCGFSNFQRRTSCFRCSFP 369

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

ASPGD|ASPL0000012537 AN8055 [Emericella nidulans (taxid:162425)]

 Score = 148 (57.2 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 37/104 (35%), Positives = 47/104 (45%)

Query:    56 RPGDWYCSAGNCGAHNFASRSSCFKCG-----AFKDDVAGG-GFDCD--MPXXXXXXXXX 107
             RPGDW C +  CG  NF  R++CF+C      A  D +A G G+     MP         
Sbjct:   352 RPGDWTCPS--CGFSNFQRRTACFRCSFPAIAANPDPMAYGYGYGPPSMMPPHVGGHGHG 409

Query:   108 XXXXX--------WKSGDWICTRSGCNEHNFASRMECFRCNAPR 143
                          +++GDW C   GC  HNFA  + C RC APR
Sbjct:   410 MGHSRGGNGGVVPFRAGDWKCGSEGCGYHNFAKNINCLRCGAPR 453

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

UNIPROTKB|G4MV21 MGG_07327 "Asparagine-rich protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 101 (40.6 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
 Identities = 17/27 (62%), Positives = 18/27 (66%)

Query:     3 RPGDWNCRSCQHLNFQRRDSCQRCGDP 29
             RPGDW C SC   NFQRR +C RC  P
Sbjct:   354 RPGDWTCPSCGFSNFQRRTACFRCSYP 380

GO:0008150 "biological_process" evidence=ND

SGD|S000002326 NRP1 "Putative RNA binding protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 107 (42.7 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
 Identities = 18/27 (66%), Positives = 19/27 (70%)

Query:     3 RPGDWNCRSCQHLNFQRRDSCQRCGDP 29
             RPGDWNC SC   NFQRR +C RC  P
Sbjct:   355 RPGDWNCPSCGFSNFQRRTACFRCSFP 381

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0010494 "cytoplasmic stress granule" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

CGD|CAL0001753 NRP1 [Candida albicans (taxid:5476)]

 Score = 95 (38.5 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
 Identities = 16/24 (66%), Positives = 16/24 (66%)

Query:     3 RPGDWNCRSCQHLNFQRRDSCQRC 26
             RPGDW C SC   NFQRR  C RC
Sbjct:   383 RPGDWTCLSCGFSNFQRRTHCFRC 406

GO:0010494 "cytoplasmic stress granule" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A791 NRP1 "Putative uncharacterized protein NRP1" [Candida albicans SC5314 (taxid:237561)]

 Score = 95 (38.5 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
 Identities = 16/24 (66%), Positives = 16/24 (66%)

Query:     3 RPGDWNCRSCQHLNFQRRDSCQRC 26
             RPGDW C SC   NFQRR  C RC
Sbjct:   383 RPGDWTCLSCGFSNFQRRTHCFRC 406

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_III2034 hypothetical protein (151 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	151
pfam00641	29	pfam00641, zf-RanBP, Zn-finger in Ran binding prot	0.004

>gnl|CDD|201366 pfam00641, zf-RanBP, Zn-finger in Ran binding protein and others

 Score = 33.1 bits (76), Expect = 0.004
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 115 SGDWICTRSGCNEHNFASRMECFRCNAPR 143
            GDW C  S C   NFA+  +C  C AP+
Sbjct: 1   EGDWDC--SKCLVQNFATSTKCVACQAPK 27

Length = 29

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
KOG4198	280	consensus RNA-binding Ran Zn-finger protein and re	99.77
KOG4198	280	consensus RNA-binding Ran Zn-finger protein and re	99.73
KOG1995	351	consensus Conserved Zn-finger protein [General fun	99.19
PF00641	30	zf-RanBP: Zn-finger in Ran binding protein and oth	98.91
PF00641	30	zf-RanBP: Zn-finger in Ran binding protein and oth	98.72
smart00547	26	ZnF_RBZ Zinc finger domain. Zinc finger domain in	98.4
smart00547	26	ZnF_RBZ Zinc finger domain. Zinc finger domain in	98.3
KOG1995	351	consensus Conserved Zn-finger protein [General fun	98.27
PF12773	50	DZR: Double zinc ribbon	95.43
PF12773	50	DZR: Double zinc ribbon	92.59
KOG4477	228	consensus RING1 interactor RYBP and related Zn-fin	92.44
PRK14559	645	putative protein serine/threonine phosphatase; Pro	91.53
PF13248	26	zf-ribbon_3: zinc-ribbon domain	89.59
KOG4477	228	consensus RING1 interactor RYBP and related Zn-fin	88.75
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	88.5
PRK14559	645	putative protein serine/threonine phosphatase; Pro	85.01
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	84.34
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	83.97
KOG4345	774	consensus NF-kappa B regulator AP20/Cezanne [Signa	82.81

>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]

Probab=99.77  E-value=9.8e-19  Score=142.75  Aligned_cols=142  Identities=39%  Similarity=0.686  Sum_probs=98.5

Q ss_pred             CCCCC-CeEeCCCCcccccccccccccCCCCCCCCC--CCCCCCCCCCCcCcCCCCCCCCCCcccCCCCCCCcccccccc
Q 031858            1 MNRPG-DWNCRSCQHLNFQRRDSCQRCGDPRSSGDF--CGFGGRGGGSSFGFGTGSDVRPGDWYCSAGNCGAHNFASRSS   77 (151)
Q Consensus         1 ~~k~g-dW~C~~C~~~N~~~~~~C~~C~~pkp~~~~--~~~~g~~~~~~~g~~~~~~~~~gdW~C~~~~C~~~N~a~r~~   77 (151)
                      |.++| ||.|..|..+||..+..|-+|..+++....  -++++....-.+.+.....+++|||+|+  .|+++||++|+.
T Consensus         3 ~~r~g~~~~~~~~~~~~~~~~~~c~~c~~~~~~i~~~~~~~~tid~~~~~~~~~~~~~~pgdw~c~--~c~~~n~arr~~   80 (280)
T KOG4198|consen    3 MFRKGVDSLKRLCLHVNFDERDSCGRCSLSRAYIQPDDDEARTIDVMRLLLTNSKDPPRPGDWNCP--LCGFHNSARRLL   80 (280)
T ss_pred             cccccCCcccchhhhhccccccccccccCCcccccccccccCccchhhhcccccCCCCCCcccccC--ccchhhHHHhhh
Confidence            66788 999999999999999999999999943100  0122211111112334567899999999  699999999999


Q ss_pred             ccccCCCCCCCCCCC---CC--CCCCC-----------CccCC--CCC--CCCCCCCCCceEEeCCCCCccccccccccc
Q 031858           78 CFKCGAFKDDVAGGG---FD--CDMPR-----------SRGSS--FGG--GNRSGWKSGDWICTRSGCNEHNFASRMECF  137 (151)
Q Consensus        78 C~~C~~~~~~~~~~~---~~--~~~~~-----------~~~~g--~~~--~~~~~~~~gdW~C~~~~C~~~Nfa~r~~C~  137 (151)
                      |++|+.++++.....   ..  .....           +...+  ++.  .....+++|||+|+  .|++|||+++.+|+
T Consensus        81 c~~c~~s~~~~~~~~~~~~~g~~~~~~~~r~~~~~~~~~~~~g~~~~~n~~~~r~~~~GDW~Cp--~C~fhNfarn~~C~  158 (280)
T KOG4198|consen   81 CFRCGFSKVPLDSALTAPNSGSRSLQTGPRYFKGDWLCPRCPGLGFSRNNKPKRPWRSGDWECP--GCNFHNFARNSECF  158 (280)
T ss_pred             cceecccCCCccccccCCCCcccccccccccccCCCCCCCCCCCcccccccccCCccccCcccC--CCCceeccccchhh
Confidence            999999887554310   00  00000           00000  000  01125799999999  99999999999999


Q ss_pred             CCCCCCCCC
Q 031858          138 RCNAPRDFG  146 (151)
Q Consensus       138 ~C~~pk~~~  146 (151)
                      +|+++++..
T Consensus       159 rC~~~r~~~  167 (280)
T KOG4198|consen  159 RCGAKRPLA  167 (280)
T ss_pred             hcCCcCccc
Confidence            999999974

>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]

Probab=99.73  E-value=5.6e-18  Score=138.32  Aligned_cols=142  Identities=37%  Similarity=0.770  Sum_probs=97.2

Q ss_pred             CCCCCeEeCCCCcccccccccccccCCCCCCCCCC------C----------C-CCCCCCCCcCcC------CCCCCCCC
Q 031858            2 NRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFC------G----------F-GGRGGGSSFGFG------TGSDVRPG   58 (151)
Q Consensus         2 ~k~gdW~C~~C~~~N~~~~~~C~~C~~pkp~~~~~------~----------~-~g~~~~~~~g~~------~~~~~~~g   58 (151)
                      .++|||.|+.|+++||++|+.|++|+.+++..+.+      +          + ++.......|.+      ...+.++|
T Consensus        60 ~~pgdw~c~~c~~~n~arr~~c~~c~~s~~~~~~~~~~~~~g~~~~~~~~r~~~~~~~~~~~~g~~~~~n~~~~r~~~~G  139 (280)
T KOG4198|consen   60 PRPGDWNCPLCGFHNSARRLLCFRCGFSKVPLDSALTAPNSGSRSLQTGPRYFKGDWLCPRCPGLGFSRNNKPKRPWRSG  139 (280)
T ss_pred             CCCcccccCccchhhHHHhhhcceecccCCCccccccCCCCcccccccccccccCCCCCCCCCCCcccccccccCCcccc
Confidence            47899999999999999999999999988754221      0          0 000001111111      01257999


Q ss_pred             CcccCCCCCCCccccccccccccCCCCCCCCC----------CCCCCCCCCC-----------------------cc---
Q 031858           59 DWYCSAGNCGAHNFASRSSCFKCGAFKDDVAG----------GGFDCDMPRS-----------------------RG---  102 (151)
Q Consensus        59 dW~C~~~~C~~~N~a~r~~C~~C~~~~~~~~~----------~~~~~~~~~~-----------------------~~---  102 (151)
                      ||+|+  .|++|||+++.+|++|+++++....          +.+.+.....                       .+   
T Consensus       140 DW~Cp--~C~fhNfarn~~C~rC~~~r~~~a~~~~~~s~~~~~~~~s~~~~~~~~t~~~~~~r~~~~~~~~~~~~d~~~~  217 (280)
T KOG4198|consen  140 DWECP--GCNFHNFARNSECFRCGAKRPLAALLGNQASEATEHDWLSKVADSSSSTRFESLLRCNARGEMSESRVDGADV  217 (280)
T ss_pred             CcccC--CCCceeccccchhhhcCCcCcccccccccccccccccccccccccccceecccchhhcccCcccccccccccc
Confidence            99999  9999999999999999999986441          1111000000                       00   


Q ss_pred             C-CCC----------CCCCCCCCCCceEEeCCCCCcccccccccccCCCCCCCCCC
Q 031858          103 S-SFG----------GGNRSGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFGN  147 (151)
Q Consensus       103 ~-g~~----------~~~~~~~~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~~~  147 (151)
                      . .|.          .......+.|||.|.  .|.++||.+|.+|.+|..+++.-.
T Consensus       218 ~~~~~~~~e~~~~~~sr~s~~~~dgdw~~~--s~~~~~~r~r~a~~~c~~~~~~~~  271 (280)
T KOG4198|consen  218 KGNFSSDDESRLEPLSRGSKSSRDGDWMCE--SCKAENFRRRNACLKCISPRGSFD  271 (280)
T ss_pred             cccccccccccccccccCcccccCCCcccc--cccchhhhhhhhhhccccCccccc
Confidence            0 010          123456789999999  899999999999999998887543

>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]

Probab=99.19  E-value=1.7e-11  Score=102.57  Aligned_cols=139  Identities=24%  Similarity=0.329  Sum_probs=85.4

Q ss_pred             CCCCeEeC--CCCcccccccccccccCCCCCCCCCCCCCCCCCCCCcCcCCCCCCCCCCcccCCCCCCCccccccccccc
Q 031858            3 RPGDWNCR--SCQHLNFQRRDSCQRCGDPRSSGDFCGFGGRGGGSSFGFGTGSDVRPGDWYCSAGNCGAHNFASRSSCFK   80 (151)
Q Consensus         3 k~gdW~C~--~C~~~N~~~~~~C~~C~~pkp~~~~~~~~g~~~~~~~g~~~~~~~~~gdW~C~~~~C~~~N~a~r~~C~~   80 (151)
                      ..++|+|+  +|.+.||.+.++|..|+..|.+..+..+....-. .........+...||.|.  .|.+.+|+.+..|. 
T Consensus        68 ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dke-T~~~KGeatvS~~D~~~a--kaai~~~agkdf~g-  143 (351)
T KOG1995|consen   68 TIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKE-TGAPKGEATVSYEDPPAA--KAAIEWFAGKDFCG-  143 (351)
T ss_pred             cceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhcccccc-ccCcCCceeeeecChhhh--hhhhhhhccccccC-
Confidence            35799998  8999999999999999999987533211110000 000001133455678887  77888887777776 


Q ss_pred             cCCCCCCCCC--C-------CCC----CCC-C---------CCccCCCC----------------CCCCCCCCCCceEEe
Q 031858           81 CGAFKDDVAG--G-------GFD----CDM-P---------RSRGSSFG----------------GGNRSGWKSGDWICT  121 (151)
Q Consensus        81 C~~~~~~~~~--~-------~~~----~~~-~---------~~~~~g~~----------------~~~~~~~~~gdW~C~  121 (151)
                       ++++-....  +       ++.    +.. .         ...+.+++                ++..+..+.+||.|+
T Consensus       144 -n~ikvs~a~~r~~ve~~rg~~~~~~g~g~fg~~~~grg~~~G~gg~~~~~~~~~rGg~~~~g~~g~~~~~~~d~Dw~c~  222 (351)
T KOG1995|consen  144 -NTIKVSLAERRTGVESVRGGYPNDGGAGEFGRLRGGRGGPGGPGGGDGEAGKGDRGGVPDGGESGGGNVQDEDGDWDCP  222 (351)
T ss_pred             -CCchhhhhhhccCcccccccccCcCCCCCccccccCCCCCCCCCCccccccccccCCcCCCcccCCccccccccccccc
Confidence             333321100  0       010    000 0         00000011                122345788999999


Q ss_pred             CCCCCcccccccccccCCCCCCCCCC
Q 031858          122 RSGCNEHNFASRMECFRCNAPRDFGN  147 (151)
Q Consensus       122 ~~~C~~~Nfa~r~~C~~C~~pk~~~~  147 (151)
                       |.|.+.||++|..|++|+++||...
T Consensus       223 -~~c~N~nfa~r~~cnrck~~Kp~~~  247 (351)
T KOG1995|consen  223 -PSCGNRNFAWREECNRCKAPKPERS  247 (351)
T ss_pred             -ccccccccccccccccccCCCcccc
Confidence             8999999999999999999998653

>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.91  E-value=7.2e-10  Score=61.91  Aligned_cols=29  Identities=45%  Similarity=1.151  Sum_probs=24.4

Q ss_pred             CCCCeEeCCCCcccccccccccccCCCCC
Q 031858            3 RPGDWNCRSCQHLNFQRRDSCQRCGDPRS   31 (151)
Q Consensus         3 k~gdW~C~~C~~~N~~~~~~C~~C~~pkp   31 (151)
                      |+|+|.|+.|.++|++++..|.+|+++||
T Consensus         1 k~g~W~C~~C~~~N~~~~~~C~~C~~~rp   29 (30)
T PF00641_consen    1 KEGDWKCPSCTFMNPASRSKCVACGAPRP   29 (30)
T ss_dssp             -SSSEEETTTTEEEESSSSB-TTT--BTT
T ss_pred             CCcCccCCCCcCCchHHhhhhhCcCCCCc
Confidence            68999999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....

>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.72  E-value=6e-09  Score=58.14  Aligned_cols=30  Identities=50%  Similarity=0.959  Sum_probs=24.5

Q ss_pred             CCCceEEeCCCCCcccccccccccCCCCCCCC
Q 031858          114 KSGDWICTRSGCNEHNFASRMECFRCNAPRDF  145 (151)
Q Consensus       114 ~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~  145 (151)
                      ++|+|.|+  .|.++|++++..|++|+++||.
T Consensus         1 k~g~W~C~--~C~~~N~~~~~~C~~C~~~rp~   30 (30)
T PF00641_consen    1 KEGDWKCP--SCTFMNPASRSKCVACGAPRPG   30 (30)
T ss_dssp             -SSSEEET--TTTEEEESSSSB-TTT--BTTB
T ss_pred             CCcCccCC--CCcCCchHHhhhhhCcCCCCcC
Confidence            46899999  8999999999999999999984

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....

>smart00547 ZnF_RBZ Zinc finger domain

Probab=98.40  E-value=1.2e-07  Score=51.01  Aligned_cols=25  Identities=52%  Similarity=1.370  Sum_probs=24.1

Q ss_pred             CCeEeCCCCcccccccccccccCCC
Q 031858            5 GDWNCRSCQHLNFQRRDSCQRCGDP   29 (151)
Q Consensus         5 gdW~C~~C~~~N~~~~~~C~~C~~p   29 (151)
                      |||.|+.|.++|++++..|..|++|
T Consensus         1 g~W~C~~C~~~N~~~~~~C~~C~~p   25 (26)
T smart00547        1 GDWECPACTFLNFASRSKCFACGAP   25 (26)
T ss_pred             CcccCCCCCCcChhhhccccccCCc
Confidence            7999999999999999999999987

Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.

>smart00547 ZnF_RBZ Zinc finger domain

Probab=98.30  E-value=2.6e-07  Score=49.63  Aligned_cols=26  Identities=58%  Similarity=1.287  Sum_probs=24.3

Q ss_pred             CceEEeCCCCCcccccccccccCCCCCC
Q 031858          116 GDWICTRSGCNEHNFASRMECFRCNAPR  143 (151)
Q Consensus       116 gdW~C~~~~C~~~Nfa~r~~C~~C~~pk  143 (151)
                      |||+|+  .|+++||+.+..|++|++|.
T Consensus         1 g~W~C~--~C~~~N~~~~~~C~~C~~p~   26 (26)
T smart00547        1 GDWECP--ACTFLNFASRSKCFACGAPX   26 (26)
T ss_pred             CcccCC--CCCCcChhhhccccccCCcC
Confidence            689999  89999999999999999873

Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.

>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]

Probab=98.27  E-value=2.8e-06  Score=71.54  Aligned_cols=35  Identities=40%  Similarity=0.831  Sum_probs=31.9

Q ss_pred             CCCCCCCcccCCCCCCCccccccccccccCCCCCCC
Q 031858           53 SDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDV   88 (151)
Q Consensus        53 ~~~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~~~   88 (151)
                      .+.+++||.|+ +.|.++||++|.+|++|+++||..
T Consensus       212 ~~~~d~Dw~c~-~~c~N~nfa~r~~cnrck~~Kp~~  246 (351)
T KOG1995|consen  212 VQDEDGDWDCP-PSCGNRNFAWREECNRCKAPKPER  246 (351)
T ss_pred             ccccccccccc-ccccccccccccccccccCCCccc
Confidence            34688999999 999999999999999999999865

>PF12773 DZR: Double zinc ribbon

Probab=95.43  E-value=0.019  Score=34.93  Aligned_cols=50  Identities=32%  Similarity=0.718  Sum_probs=41.6

Q ss_pred             eCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCcCcCCCCCCCCCCcccCCCCCCCccccccccccccC
Q 031858            9 CRSCQHLNFQRRDSCQRCGDPRSSGDFCGFGGRGGGSSFGFGTGSDVRPGDWYCSAGNCGAHNFASRSSCFKCG   82 (151)
Q Consensus         9 C~~C~~~N~~~~~~C~~C~~pkp~~~~~~~~g~~~~~~~g~~~~~~~~~gdW~C~~~~C~~~N~a~r~~C~~C~   82 (151)
                      |+.|+..|-.....|..|+++-+.                      .....+.|+  .|+..|......|..|+
T Consensus         1 Cp~Cg~~~~~~~~fC~~CG~~l~~----------------------~~~~~~~C~--~Cg~~~~~~~~fC~~CG   50 (50)
T PF12773_consen    1 CPHCGTPNPDDAKFCPHCGTPLPP----------------------PDQSKKICP--NCGAENPPNAKFCPNCG   50 (50)
T ss_pred             CCCcCCcCCccccCChhhcCChhh----------------------ccCCCCCCc--CCcCCCcCCcCccCccc
Confidence            789999999999999999987651                      112367898  99999999999999885

>PF12773 DZR: Double zinc ribbon

Probab=92.59  E-value=0.14  Score=31.00  Aligned_cols=48  Identities=25%  Similarity=0.523  Sum_probs=39.3

Q ss_pred             CCCCccccccccccccCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCceEEeCCCCCcccccccccccCCC
Q 031858           66 NCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMPRSRGSSFGGGNRSGWKSGDWICTRSGCNEHNFASRMECFRCN  140 (151)
Q Consensus        66 ~C~~~N~a~r~~C~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~gdW~C~~~~C~~~Nfa~r~~C~~C~  140 (151)
                      .|+..+-.....|..|+++.+..                         ....+.|+  .|+..|......|..|+
T Consensus         3 ~Cg~~~~~~~~fC~~CG~~l~~~-------------------------~~~~~~C~--~Cg~~~~~~~~fC~~CG   50 (50)
T PF12773_consen    3 HCGTPNPDDAKFCPHCGTPLPPP-------------------------DQSKKICP--NCGAENPPNAKFCPNCG   50 (50)
T ss_pred             CcCCcCCccccCChhhcCChhhc-------------------------cCCCCCCc--CCcCCCcCCcCccCccc
Confidence            89999999999999999887511                         12346899  89999999999999885

>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]

Probab=92.44  E-value=0.054  Score=42.42  Aligned_cols=29  Identities=24%  Similarity=0.667  Sum_probs=25.7

Q ss_pred             CCCeEeCCCCcccccccccccccCCCCCC
Q 031858            4 PGDWNCRSCQHLNFQRRDSCQRCGDPRSS   32 (151)
Q Consensus         4 ~gdW~C~~C~~~N~~~~~~C~~C~~pkp~   32 (151)
                      .|-|+|..|.|+|-+-..+|+.|..-|..
T Consensus        22 eg~WdCsvCTFrNsAeAfkC~vCdvRKGT   50 (228)
T KOG4477|consen   22 EGKWDCSVCTFRNSAEAFKCFVCDVRKGT   50 (228)
T ss_pred             cCceeeeeeeecchhhhhheeeecccccc
Confidence            46899999999999999999999986643

>PRK14559 putative protein serine/threonine phosphatase; Provisional

Probab=91.53  E-value=0.18  Score=46.26  Aligned_cols=50  Identities=30%  Similarity=0.697  Sum_probs=42.8

Q ss_pred             EeCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCcCcCCCCCCCCCCcccCCCCCCCccccccccccccCCCCC
Q 031858            8 NCRSCQHLNFQRRDSCQRCGDPRSSGDFCGFGGRGGGSSFGFGTGSDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKD   86 (151)
Q Consensus         8 ~C~~C~~~N~~~~~~C~~C~~pkp~~~~~~~~g~~~~~~~g~~~~~~~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~   86 (151)
                      .||.|+..|-....+|.+|+++-..                       +    .|+  .|+..+-.....|..|+++-.
T Consensus         3 ~Cp~Cg~~n~~~akFC~~CG~~l~~-----------------------~----~Cp--~CG~~~~~~~~fC~~CG~~~~   52 (645)
T PRK14559          3 ICPQCQFENPNNNRFCQKCGTSLTH-----------------------K----PCP--QCGTEVPVDEAHCPNCGAETG   52 (645)
T ss_pred             cCCCCCCcCCCCCccccccCCCCCC-----------------------C----cCC--CCCCCCCcccccccccCCccc
Confidence            6999999999999999999876321                       0    488  999999999999999998854

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=89.59  E-value=0.17  Score=26.91  Aligned_cols=23  Identities=22%  Similarity=0.471  Sum_probs=20.7

Q ss_pred             eEeCCCCcccccccccccccCCC
Q 031858            7 WNCRSCQHLNFQRRDSCQRCGDP   29 (151)
Q Consensus         7 W~C~~C~~~N~~~~~~C~~C~~p   29 (151)
                      ..|+.|+..+......|..|+++
T Consensus         3 ~~Cp~Cg~~~~~~~~fC~~CG~~   25 (26)
T PF13248_consen    3 MFCPNCGAEIDPDAKFCPNCGAK   25 (26)
T ss_pred             CCCcccCCcCCcccccChhhCCC
Confidence            57999999999999999999975

>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]

Probab=88.75  E-value=0.24  Score=38.91  Aligned_cols=34  Identities=26%  Similarity=0.671  Sum_probs=29.3

Q ss_pred             CCCCCCceEEeCCCCCcccccccccccCCCCCCCCC
Q 031858          111 SGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFG  146 (151)
Q Consensus       111 ~~~~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~~  146 (151)
                      .....|-|.|.  .|.++|-|-...|+.|...+..+
T Consensus        18 p~~Deg~WdCs--vCTFrNsAeAfkC~vCdvRKGTS   51 (228)
T KOG4477|consen   18 PNDDEGKWDCS--VCTFRNSAEAFKCFVCDVRKGTS   51 (228)
T ss_pred             CccccCceeee--eeeecchhhhhheeeeccccccc
Confidence            34567889999  89999999999999998887765

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=88.50  E-value=0.25  Score=25.68  Aligned_cols=21  Identities=29%  Similarity=0.741  Sum_probs=19.3

Q ss_pred             eCCCCcccccccccccccCCC
Q 031858            9 CRSCQHLNFQRRDSCQRCGDP   29 (151)
Q Consensus         9 C~~C~~~N~~~~~~C~~C~~p   29 (151)
                      |+.|+..+......|..|+++
T Consensus         2 Cp~CG~~~~~~~~fC~~CG~~   22 (23)
T PF13240_consen    2 CPNCGAEIEDDAKFCPNCGTP   22 (23)
T ss_pred             CcccCCCCCCcCcchhhhCCc
Confidence            899999999999999999975

>PRK14559 putative protein serine/threonine phosphatase; Provisional

Probab=85.01  E-value=0.89  Score=41.88  Aligned_cols=50  Identities=26%  Similarity=0.564  Sum_probs=41.8

Q ss_pred             ccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCceEEeCCCCCcccccccccccCCC
Q 031858           61 YCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMPRSRGSSFGGGNRSGWKSGDWICTRSGCNEHNFASRMECFRCN  140 (151)
Q Consensus        61 ~C~~~~C~~~N~a~r~~C~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~gdW~C~~~~C~~~Nfa~r~~C~~C~  140 (151)
                      .|+  .|+..|-.....|.+|+++-..                          +    .|+  .|+..|-.....|..|+
T Consensus         3 ~Cp--~Cg~~n~~~akFC~~CG~~l~~--------------------------~----~Cp--~CG~~~~~~~~fC~~CG   48 (645)
T PRK14559          3 ICP--QCQFENPNNNRFCQKCGTSLTH--------------------------K----PCP--QCGTEVPVDEAHCPNCG   48 (645)
T ss_pred             cCC--CCCCcCCCCCccccccCCCCCC--------------------------C----cCC--CCCCCCCcccccccccC
Confidence            587  9999999999999999876420                          1    599  89999999999999998


Q ss_pred             CCCC
Q 031858          141 APRD  144 (151)
Q Consensus       141 ~pk~  144 (151)
                      ++-.
T Consensus        49 ~~~~   52 (645)
T PRK14559         49 AETG   52 (645)
T ss_pred             Cccc
Confidence            8754

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=84.34  E-value=0.81  Score=25.91  Aligned_cols=25  Identities=28%  Similarity=0.872  Sum_probs=20.2

Q ss_pred             CeEeCCCCcccccc--cccccccCCCC
Q 031858            6 DWNCRSCQHLNFQR--RDSCQRCGDPR   30 (151)
Q Consensus         6 dW~C~~C~~~N~~~--~~~C~~C~~pk   30 (151)
                      .|.|..|+++-...  ...|..|++++
T Consensus         2 ~~~C~~CG~i~~g~~~p~~CP~Cg~~~   28 (34)
T cd00729           2 VWVCPVCGYIHEGEEAPEKCPICGAPK   28 (34)
T ss_pred             eEECCCCCCEeECCcCCCcCcCCCCch
Confidence            49999999985543  47899999876

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=83.97  E-value=0.84  Score=25.52  Aligned_cols=26  Identities=23%  Similarity=0.608  Sum_probs=20.1

Q ss_pred             CeEeCCCCcccccc--cccccccCCCCC
Q 031858            6 DWNCRSCQHLNFQR--RDSCQRCGDPRS   31 (151)
Q Consensus         6 dW~C~~C~~~N~~~--~~~C~~C~~pkp   31 (151)
                      .|.|..|+++-...  ...|..|++++.
T Consensus         1 ~~~C~~CGy~y~~~~~~~~CP~Cg~~~~   28 (33)
T cd00350           1 KYVCPVCGYIYDGEEAPWVCPVCGAPKD   28 (33)
T ss_pred             CEECCCCCCEECCCcCCCcCcCCCCcHH
Confidence            49999999985544  567999998763

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG4345 consensus NF-kappa B regulator AP20/Cezanne [Signal transduction mechanisms]

Probab=82.81  E-value=0.39  Score=44.31  Aligned_cols=139  Identities=14%  Similarity=0.162  Sum_probs=84.3

Q ss_pred             CCCCC-CeEeCCCCcccccccccccccCCCCCCC-----CCCCCCCCCC--------------------CCCc----CcC
Q 031858            1 MNRPG-DWNCRSCQHLNFQRRDSCQRCGDPRSSG-----DFCGFGGRGG--------------------GSSF----GFG   50 (151)
Q Consensus         1 ~~k~g-dW~C~~C~~~N~~~~~~C~~C~~pkp~~-----~~~~~~g~~~--------------------~~~~----g~~   50 (151)
                      |+-.+ .|.|..|.+.|+....+|..|++.++.+     |+  |.+.++                    ..++    .+.
T Consensus         1 ~~~~~~~W~~~~~~~~~lp~al~lS~~~~s~~~~~~l~eDi--fk~~n~~~~~~~sd~~~~r~v~~~~~~p~f~~s~~~r   78 (774)
T KOG4345|consen    1 MPTSAEKWACELCDYMTLPMALVLSDFRRSTGAEPGLAEDI--FKGKNWDIHAALSDYEQLRQVHEMNLTPSFCESGQPR   78 (774)
T ss_pred             CcchhHHHHHHhhccccCchhhHHHHHHhccCCCCCcchhh--ccCCCccceeecccHHHHHhhhccCCCCcccccCCcc
Confidence            44444 6999999999999999999999988754     32  111110                    0011    011


Q ss_pred             ---CC-CCCCCCCcccCCCCCCCccccccccccccCCCCCCCCC--------CCCCCCCC--------CCcc-CCCCCCC
Q 031858           51 ---TG-SDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAG--------GGFDCDMP--------RSRG-SSFGGGN  109 (151)
Q Consensus        51 ---~~-~~~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~~~~~--------~~~~~~~~--------~~~~-~g~~~~~  109 (151)
                         .+ .......|.|+  .|...||++...|.+|-..+.+...        ..+..++.        +..+ ...+.++
T Consensus        79 ~~~~~s~~~~~~k~~~~--~~~~lnw~re~R~~~~ls~~gd~~~~~~q~pq~s~~~qs~~VaL~~~l~~~l~~~dt~~~N  156 (774)
T KOG4345|consen   79 EIIHKSLIDRNIKWPRP--SLQRLNWPREKRLSRGLSHAGDMPILAFQLPQLSVYEQSTPVALEKALFRLLPLADTGDGN  156 (774)
T ss_pred             cccccccccccccCCch--HhhhhhHHHHHHHHHHhhccCCCccchhccchhhccccccchhhhhhhhhcccccccCCcc
Confidence               11 23456799999  9999999999999999665532211        00100000        0000 0000001


Q ss_pred             --CCCC-------------------CCCceEEeCCCCCcccccccccccCCCCCCCC
Q 031858          110 --RSGW-------------------KSGDWICTRSGCNEHNFASRMECFRCNAPRDF  145 (151)
Q Consensus       110 --~~~~-------------------~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~  145 (151)
                        ....                   =...|+|.  .|.+.|+++-..|..|+++++.
T Consensus       157 ~l~w~~h~lvlqk~l~t~l~~~~~rw~~eW~~l--ik~ass~pr~~r~~~~~~~~~~  211 (774)
T KOG4345|consen  157 CLMWGFHDLVLQKALYTGLCYGTERWNDEWTEL--IKLASSEPRMHRSGNGGTGGGV  211 (774)
T ss_pred             chhhhhhhHHHHHHHHHhhchhhHHHHHHHHHH--HHhhcccchhhhcccCCCCCCc
Confidence              0000                   12349999  8999999999999999888774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	4e-07
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	4e-07
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	1e-06
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	5e-05
1n0z_A	45	ZNF265; zinc finger, RNA splicing, transcription;	3e-05
1n0z_A	45	ZNF265; zinc finger, RNA splicing, transcription;	4e-04
1n0z_A	45	ZNF265; zinc finger, RNA splicing, transcription;	9e-04

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Length = 92

 Score = 44.5 bits (104), Expect = 4e-07
 Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 52  GSDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMPRSRGS-SFGGGNR 110
           G     G W C    C   N A  S C  C + K  +        +P S  S    G ++
Sbjct: 1   GPLGSVGSWECPV--CCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDK 58

Query: 111 SGWKSGDWICTRSGCNEHNFASRMECFRCNAPRD 144
                G W C    C   N A   +C  C + + 
Sbjct: 59  FKKPEGSWDC--EVCLVQNKADSTKCIACESAKP 90

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Length = 92

 Score = 44.5 bits (104), Expect = 4e-07
 Identities = 17/88 (19%), Positives = 20/88 (22%), Gaps = 6/88 (6%)

Query: 4  PGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFCGFGGRGGGS----SFGFGTGSDVRPGD 59
           G W C  C   N      C  C   +              S                G 
Sbjct: 6  VGSWECPVCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKKPEGS 65

Query: 60 WYCSAGNCGAHNFASRSSCFKCGAFKDD 87
          W C    C   N A  + C  C + K  
Sbjct: 66 WDCEV--CLVQNKADSTKCIACESAKPG 91

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Length = 98

 Score = 43.7 bits (102), Expect = 1e-06
 Identities = 18/90 (20%), Positives = 21/90 (23%), Gaps = 12/90 (13%)

Query: 4  PGDWNCRSCQHLNFQRRDSCQRCGDPR----------SSGDFCGFGGRGGGSSFGFGTGS 53
             W C +C   N    + C  C   +            G           S  GFG   
Sbjct: 7  GSSWQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGDKF 66

Query: 54 DVRPGDWYCSAGNCGAHNFASRSSCFKCGA 83
              G W C    C   N      C  C  
Sbjct: 67 KPAIGTWDCDT--CLVQNKPEAVKCVACET 94

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Length = 98

 Score = 39.1 bits (90), Expect = 5e-05
 Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 11/94 (11%)

Query: 57  PGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMPRSRGSS-------FGGGN 109
              W C    C   N  + + C  C A K  +        +     S         G G+
Sbjct: 7   GSSWQCDT--CLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGD 64

Query: 110 RSGWKSGDWICTRSGCNEHNFASRMECFRCNAPR 143
           +     G W C    C   N    ++C  C  P+
Sbjct: 65  KFKPAIGTWDC--DTCLVQNKPEAVKCVACETPK 96

>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1 Length = 45

 Score = 38.8 bits (90), Expect = 3e-05
 Identities = 14/33 (42%), Positives = 15/33 (45%)

Query: 114 KSGDWICTRSGCNEHNFASRMECFRCNAPRDFG 146
             GDWIC    C   NFA R  C RC   +  G
Sbjct: 11  SDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43

>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1 Length = 45

 Score = 35.3 bits (81), Expect = 4e-04
 Identities = 16/34 (47%), Positives = 18/34 (52%)

Query: 54 DVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDD 87
           V  GDW C    CG  NFA R+SC +CG  K  
Sbjct: 9  RVSDGDWICPDKKCGNVNFARRTSCDRCGREKTT 42

>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1 Length = 45

 Score = 34.5 bits (79), Expect = 9e-04
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 3  RPGDWNC--RSCQHLNFQRRDSCQRCGDPRSSG 33
            GDW C  + C ++NF RR SC RCG  +++G
Sbjct: 11 SDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	99.76
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	99.69
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	99.32
2lk0_A	32	RNA-binding protein 5; zinc finger; NMR {Homo sapi	99.3
1n0z_A	45	ZNF265; zinc finger, RNA splicing, transcription;	99.26
2k1p_A	33	Zinc finger RAN-binding domain-containing protein	99.25
2k1p_A	33	Zinc finger RAN-binding domain-containing protein	99.2
1n0z_A	45	ZNF265; zinc finger, RNA splicing, transcription;	99.2
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	99.19
2lk0_A	32	RNA-binding protein 5; zinc finger; NMR {Homo sapi	99.17
3gj3_B	33	Nuclear pore complex protein NUP153; G protein, GD	98.61
3gj5_B	34	Nuclear pore complex protein NUP153; G protein, GD	98.59
2ebq_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	98.48
2ebr_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	98.27
3gj5_B	34	Nuclear pore complex protein NUP153; G protein, GD	98.26
2ebr_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	98.24
3gj3_B	33	Nuclear pore complex protein NUP153; G protein, GD	98.22
2ebq_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	98.2
2ebv_A	57	Nuclear pore complex protein NUP153; ZF-ranbp doma	98.13
2ebv_A	57	Nuclear pore complex protein NUP153; ZF-ranbp doma	97.93
2d9g_A	53	YY1-associated factor 2; ZF-ranbp domain, structur	97.73
2d9g_A	53	YY1-associated factor 2; ZF-ranbp domain, structur	97.64
3a9j_C	34	Mitogen-activated protein kinase kinase kinase 7-	97.18
1nj3_A	31	NPL4; NZF domain, rubredoxin knuckle, beta-ribbon,	97.02
3a9j_C	34	Mitogen-activated protein kinase kinase kinase 7-	96.78
1nj3_A	31	NPL4; NZF domain, rubredoxin knuckle, beta-ribbon,	96.71
3b08_B	64	Ranbp-type and C3HC4-type zinc finger-containing;	96.27
2crc_A	52	Ubiquitin conjugating enzyme 7 interacting protein	95.76
2crc_A	52	Ubiquitin conjugating enzyme 7 interacting protein	95.46
3b08_B	64	Ranbp-type and C3HC4-type zinc finger-containing;	95.22
2c6a_A	46	Ubiquitin-protein ligase E3 MDM2; zinc finger, hum	93.62
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	90.65
2c6a_A	46	Ubiquitin-protein ligase E3 MDM2; zinc finger, hum	90.47
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	87.22
2cr8_A	53	MDM4 protein; ZF-ranbp domain, P53-binding protein	85.53

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*

Probab=99.76  E-value=1.4e-19  Score=125.32  Aligned_cols=83  Identities=22%  Similarity=0.466  Sum_probs=26.5

Q ss_pred             CCCCCeEeCCCCcccccccccccccCCCCCCCCCCC---CCC--CCCCCCcCcCCCCCCCCCCcccCCCCCCCccccccc
Q 031858            2 NRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFCG---FGG--RGGGSSFGFGTGSDVRPGDWYCSAGNCGAHNFASRS   76 (151)
Q Consensus         2 ~k~gdW~C~~C~~~N~~~~~~C~~C~~pkp~~~~~~---~~g--~~~~~~~g~~~~~~~~~gdW~C~~~~C~~~N~a~r~   76 (151)
                      .++|||+|+.|+++||+++++|++|++|||......   ...  ...+...|| ..+..++|+|+|.  .|.++|+++++
T Consensus         4 ~~~g~W~C~~C~~~N~~~~~~C~~C~~pkp~~~~~~~~~~~~~~~~~~~~~g~-~~f~~~~g~W~C~--~C~~~N~a~~~   80 (92)
T 3gj8_B            4 GSVGSWECPVCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGL-DKFKKPEGSWDCE--VCLVQNKADST   80 (92)
T ss_dssp             -------------------------------------------------------------CCEECT--TTCCEECSSCS
T ss_pred             CCCcCCCCCcCCCEeccccceecccCCCCCCCCCccccccCcccccccccccc-cccCCCCCcccCC--cCCcCChhhcc
Confidence            478999999999999999999999999998642211   000  000112234 4567789999999  99999999999


Q ss_pred             cccccCCCCCC
Q 031858           77 SCFKCGAFKDD   87 (151)
Q Consensus        77 ~C~~C~~~~~~   87 (151)
                      +|+.|+++||.
T Consensus        81 ~C~~C~~pkp~   91 (92)
T 3gj8_B           81 KCIACESAKPG   91 (92)
T ss_dssp             BCTTTCCBCC-
T ss_pred             cccccCCCCCC
Confidence            99999999984

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*

Probab=99.69  E-value=3.7e-18  Score=118.10  Aligned_cols=84  Identities=23%  Similarity=0.481  Sum_probs=26.6

Q ss_pred             CCCCCcccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCC--CCc--cCCCCCCCCCCCCCCceEEeCCCCCcccc
Q 031858           55 VRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMP--RSR--GSSFGGGNRSGWKSGDWICTRSGCNEHNF  130 (151)
Q Consensus        55 ~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~~~~~~~~~~~~~--~~~--~~g~~~~~~~~~~~gdW~C~~~~C~~~Nf  130 (151)
                      .++|||+|.  .|+++||++++.|++|+++||......-....+  ...  ..+|   ..+..++|+|+|.  .|+++||
T Consensus         4 ~~~g~W~C~--~C~~~N~~~~~~C~~C~~pkp~~~~~~~~~~~~~~~~~~~~~g~---~~f~~~~g~W~C~--~C~~~N~   76 (92)
T 3gj8_B            4 GSVGSWECP--VCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGL---DKFKKPEGSWDCE--VCLVQNK   76 (92)
T ss_dssp             -----------------------------------------------------------------CCEECT--TTCCEEC
T ss_pred             CCCcCCCCC--cCCCEeccccceecccCCCCCCCCCccccccCcccccccccccc---cccCCCCCcccCC--cCCcCCh
Confidence            467999999  999999999999999999998654311000000  000  0122   3466789999999  8999999


Q ss_pred             cccccccCCCCCCCC
Q 031858          131 ASRMECFRCNAPRDF  145 (151)
Q Consensus       131 a~r~~C~~C~~pk~~  145 (151)
                      +.+++|+.|++|||.
T Consensus        77 a~~~~C~~C~~pkp~   91 (92)
T 3gj8_B           77 ADSTKCIACESAKPG   91 (92)
T ss_dssp             SSCSBCTTTCCBCC-
T ss_pred             hhcccccccCCCCCC
Confidence            999999999999985

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*

Probab=99.32  E-value=4e-13  Score=93.77  Aligned_cols=81  Identities=22%  Similarity=0.432  Sum_probs=26.5

Q ss_pred             CCCeEeCCCCcccccccccccccCCCCCCCCCC-----CCCC-----CCCCCCcCcCCCCCCCCCCcccCCCCCCCcccc
Q 031858            4 PGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFC-----GFGG-----RGGGSSFGFGTGSDVRPGDWYCSAGNCGAHNFA   73 (151)
Q Consensus         4 ~gdW~C~~C~~~N~~~~~~C~~C~~pkp~~~~~-----~~~g-----~~~~~~~g~~~~~~~~~gdW~C~~~~C~~~N~a   73 (151)
                      ..+|.|..|.++|.++..+|..|++||+.....     ....     .......||+..+..+.|.|+|.  .|.++|.+
T Consensus         7 ~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfgd~fk~~~g~W~C~--~C~~~N~~   84 (98)
T 3gj7_B            7 GSSWQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGDKFKPAIGTWDCD--TCLVQNKP   84 (98)
T ss_dssp             ----------------------------------------------------------------CCEECT--TTCCEECT
T ss_pred             CCcccCCccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchhhccCCCCCcccCC--cCcCCChh
Confidence            458999999999999999999999999853110     0000     00112345666678889999999  99999999


Q ss_pred             ccccccccCCCCC
Q 031858           74 SRSSCFKCGAFKD   86 (151)
Q Consensus        74 ~r~~C~~C~~~~~   86 (151)
                      ....|..|+++||
T Consensus        85 ~~~~C~aC~tpkP   97 (98)
T 3gj7_B           85 EAVKCVACETPKP   97 (98)
T ss_dssp             TCSBCTTTCCBCC
T ss_pred             hcceecccCCCCC
Confidence            9999999999997

>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*

Probab=99.30  E-value=8.7e-13  Score=74.26  Aligned_cols=31  Identities=35%  Similarity=0.825  Sum_probs=28.9

Q ss_pred             CCCCCeEeCCCCcccccccccccccCCCCCC
Q 031858            2 NRPGDWNCRSCQHLNFQRRDSCQRCGDPRSS   32 (151)
Q Consensus         2 ~k~gdW~C~~C~~~N~~~~~~C~~C~~pkp~   32 (151)
                      +|+|||+|+.|+++||++|+.|++|++||+.
T Consensus         1 pk~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~   31 (32)
T 2lk0_A            1 XKFEDWLCNKCCLNNFRKRLKCFRCGADKFD   31 (32)
T ss_dssp             -CCSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred             CCCCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence            5899999999999999999999999999975

>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1

Probab=99.26  E-value=4.1e-12  Score=76.76  Aligned_cols=37  Identities=38%  Similarity=0.829  Sum_probs=33.9

Q ss_pred             CCCCCCCceEEeCCCCCcccccccccccCCCCCCCCC
Q 031858          110 RSGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFG  146 (151)
Q Consensus       110 ~~~~~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~~  146 (151)
                      .+..++|||+|+++.|+++||++|+.|++|++||+.+
T Consensus         7 ~~~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~   43 (45)
T 1n0z_A            7 NFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG   43 (45)
T ss_dssp             SCSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred             cCCCCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence            4567899999998889999999999999999999876

>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A

Probab=99.25  E-value=3.2e-12  Score=72.38  Aligned_cols=31  Identities=32%  Similarity=1.081  Sum_probs=29.4

Q ss_pred             CCCCCeEeCCCCcccccccccccccCCCCCC
Q 031858            2 NRPGDWNCRSCQHLNFQRRDSCQRCGDPRSS   32 (151)
Q Consensus         2 ~k~gdW~C~~C~~~N~~~~~~C~~C~~pkp~   32 (151)
                      .++|||+|+.|+++||++|+.|++|++||+.
T Consensus         2 ~~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~   32 (33)
T 2k1p_A            2 SSANDWQCKTCSNVNWARRSECNMCNTPKYA   32 (33)
T ss_dssp             CSSSSCBCSSSCCBCCTTCSBCSSSCCBTTC
T ss_pred             CCCCCcccCCCCCccccccccccccCCcCCC
Confidence            4899999999999999999999999999975

>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A

Probab=99.20  E-value=7.1e-12  Score=70.95  Aligned_cols=31  Identities=39%  Similarity=0.875  Sum_probs=29.1

Q ss_pred             CCCCceEEeCCCCCcccccccccccCCCCCCCC
Q 031858          113 WKSGDWICTRSGCNEHNFASRMECFRCNAPRDF  145 (151)
Q Consensus       113 ~~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~  145 (151)
                      .++|||+|+  .|+++||++|+.|++|++||+.
T Consensus         2 ~~~gDW~C~--~C~~~Nfa~R~~C~~C~~pk~~   32 (33)
T 2k1p_A            2 SSANDWQCK--TCSNVNWARRSECNMCNTPKYA   32 (33)
T ss_dssp             CSSSSCBCS--SSCCBCCTTCSBCSSSCCBTTC
T ss_pred             CCCCCcccC--CCCCccccccccccccCCcCCC
Confidence            468999999  8999999999999999999985

>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1

Probab=99.20  E-value=1.3e-11  Score=74.56  Aligned_cols=36  Identities=44%  Similarity=0.887  Sum_probs=33.1

Q ss_pred             CCCCCCCcccCCCCCCCccccccccccccCCCCCCC
Q 031858           53 SDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDV   88 (151)
Q Consensus        53 ~~~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~~~   88 (151)
                      ...++|||+|+++.|+++||++|..|++|+++|+++
T Consensus         8 ~~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~   43 (45)
T 1n0z_A            8 FRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG   43 (45)
T ss_dssp             CSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred             CCCCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence            567899999998889999999999999999999864

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*

Probab=99.19  E-value=4.7e-12  Score=88.33  Aligned_cols=84  Identities=23%  Similarity=0.521  Sum_probs=26.5

Q ss_pred             CCCCcccCCCCCCCccccccccccccCCCCCCCCCCC-----C-CC---CCCCCccCCCCCCCCCCCCCCceEEeCCCCC
Q 031858           56 RPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAGGG-----F-DC---DMPRSRGSSFGGGNRSGWKSGDWICTRSGCN  126 (151)
Q Consensus        56 ~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~~~~~~~-----~-~~---~~~~~~~~g~~~~~~~~~~~gdW~C~~~~C~  126 (151)
                      ....|.|.  .|.++|.++...|..|+++|+......     . .+   ........||+  ..+..+.|.|.|.  .|.
T Consensus         6 ~~~~W~C~--~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfg--d~fk~~~g~W~C~--~C~   79 (98)
T 3gj7_B            6 AGSSWQCD--TCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFG--DKFKPAIGTWDCD--TCL   79 (98)
T ss_dssp             ---------------------------------------------------------------------CCEECT--TTC
T ss_pred             CCCcccCC--ccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchh--hccCCCCCcccCC--cCc
Confidence            34689999  999999999999999999998543110     0 00   00011123453  5677889999999  899


Q ss_pred             cccccccccccCCCCCCCC
Q 031858          127 EHNFASRMECFRCNAPRDF  145 (151)
Q Consensus       127 ~~Nfa~r~~C~~C~~pk~~  145 (151)
                      ++|.+....|..|++|||.
T Consensus        80 ~~N~~~~~~C~aC~tpkPg   98 (98)
T 3gj7_B           80 VQNKPEAVKCVACETPKPG   98 (98)
T ss_dssp             CEECTTCSBCTTTCCBCC-
T ss_pred             CCChhhcceecccCCCCCC
Confidence            9999999999999999984

>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*

Probab=99.17  E-value=8.6e-12  Score=70.13  Aligned_cols=31  Identities=42%  Similarity=0.956  Sum_probs=28.4

Q ss_pred             CCCceEEeCCCCCcccccccccccCCCCCCCCC
Q 031858          114 KSGDWICTRSGCNEHNFASRMECFRCNAPRDFG  146 (151)
Q Consensus       114 ~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~~  146 (151)
                      +.|||+|+  .|+++||++|..|++|++||++.
T Consensus         2 k~gDW~C~--~C~~~Nfa~r~~C~~C~~pr~~a   32 (32)
T 2lk0_A            2 KFEDWLCN--KCCLNNFRKRLKCFRCGADKFDX   32 (32)
T ss_dssp             CCSEEECT--TTCCEEETTCCBCTTTCCBTTC-
T ss_pred             CCCCCCcC--cCcCCcChhcceecCCCCcCCCC
Confidence            57999999  89999999999999999999863

>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A

Probab=98.61  E-value=1.8e-08  Score=56.76  Aligned_cols=29  Identities=28%  Similarity=0.799  Sum_probs=26.6

Q ss_pred             CCCCeEeCCCCcccccccccccccCCCCC
Q 031858            3 RPGDWNCRSCQHLNFQRRDSCQRCGDPRS   31 (151)
Q Consensus         3 k~gdW~C~~C~~~N~~~~~~C~~C~~pkp   31 (151)
                      ++|+|+|+.|.++|.++.++|..|.+|||
T Consensus         4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpkP   32 (33)
T 3gj3_B            4 GSGTWDCDTCLVQNKPEAVKCVACETPKP   32 (33)
T ss_dssp             --CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred             CCCceeCCcccCCCccccCEEcccCCCCC
Confidence            67999999999999999999999999998

>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1

Probab=98.59  E-value=2e-08  Score=56.93  Aligned_cols=31  Identities=23%  Similarity=0.656  Sum_probs=25.8

Q ss_pred             CCCCCeEeCCCCcccccccccccccCCCCCC
Q 031858            2 NRPGDWNCRSCQHLNFQRRDSCQRCGDPRSS   32 (151)
Q Consensus         2 ~k~gdW~C~~C~~~N~~~~~~C~~C~~pkp~   32 (151)
                      .++|+|+|+.|.++|.++.++|..|++|||.
T Consensus         3 ~~~G~W~C~~C~v~N~~~~~kC~aCet~Kpg   33 (34)
T 3gj5_B            3 LGSGSWDCEVCLVQNKADSTKCIACESAKPG   33 (34)
T ss_dssp             ---CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred             CCCCceECCeeEeECccccCEEcccCCcCCC
Confidence            3689999999999999999999999999984

>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.48  E-value=9.9e-08  Score=57.79  Aligned_cols=33  Identities=24%  Similarity=0.636  Sum_probs=30.5

Q ss_pred             CCCCCCeEeCCCCcccccccccccccCCCCCCC
Q 031858            1 MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSG   33 (151)
Q Consensus         1 ~~k~gdW~C~~C~~~N~~~~~~C~~C~~pkp~~   33 (151)
                      ++++|.|+|..|.+.|.+...+|+.|++|||..
T Consensus         6 ~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs   38 (47)
T 2ebq_A            6 SGVIGTWDCDTCLVQNKPEAIKCVACETPKPGT   38 (47)
T ss_dssp             CCCSSSEECSSSCCEECSSCSBCSSSCCBCSCS
T ss_pred             CCCCCceECCeeeccCccCCceecCcCCCCCCC
Confidence            467899999999999999999999999999864

>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.27  E-value=5.9e-07  Score=54.40  Aligned_cols=37  Identities=24%  Similarity=0.518  Sum_probs=33.4

Q ss_pred             CCCCCCCCceEEeCCCCCcccccccccccCCCCCCCCCC
Q 031858          109 NRSGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFGN  147 (151)
Q Consensus       109 ~~~~~~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~~~  147 (151)
                      ..+..+.|.|.|.  .|.+.|.+.+..|+.|++|||...
T Consensus         3 ~~fk~~~gsW~C~--~C~v~N~a~~~kC~aC~~pkpg~~   39 (47)
T 2ebr_A            3 SGSSGPEGSWDCE--LCLVQNKADSTKCLACESAKPGTK   39 (47)
T ss_dssp             SSCSSCCSSCCCS--SSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred             ccccCCCCeeECC--eeecCCcCCcceecCcCCCCCCCc
Confidence            3567789999999  899999999999999999999764

>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1

Probab=98.26  E-value=3.5e-07  Score=51.76  Aligned_cols=31  Identities=29%  Similarity=0.716  Sum_probs=25.6

Q ss_pred             CCCCCcccCCCCCCCccccccccccccCCCCCC
Q 031858           55 VRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDD   87 (151)
Q Consensus        55 ~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~~   87 (151)
                      +++|.|+|.  .|.++|.+...+|..|.++||.
T Consensus         3 ~~~G~W~C~--~C~v~N~~~~~kC~aCet~Kpg   33 (34)
T 3gj5_B            3 LGSGSWDCE--VCLVQNKADSTKCIACESAKPG   33 (34)
T ss_dssp             ---CCEECT--TTCCEECSSCSBCTTTCCBC--
T ss_pred             CCCCceECC--eeEeECccccCEEcccCCcCCC
Confidence            578999999  9999999999999999999974

>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.24  E-value=1e-06  Score=53.30  Aligned_cols=37  Identities=30%  Similarity=0.633  Sum_probs=33.2

Q ss_pred             CCCCCCCCcccCCCCCCCccccccccccccCCCCCCCCC
Q 031858           52 GSDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAG   90 (151)
Q Consensus        52 ~~~~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~~~~~   90 (151)
                      ++...+|.|+|.  .|.++|.+.+..|+.|++|++...+
T Consensus         4 ~fk~~~gsW~C~--~C~v~N~a~~~kC~aC~~pkpg~~p   40 (47)
T 2ebr_A            4 GSSGPEGSWDCE--LCLVQNKADSTKCLACESAKPGTKS   40 (47)
T ss_dssp             SCSSCCSSCCCS--SSCCCCCSSCSBCSSSCCBCCCCCS
T ss_pred             cccCCCCeeECC--eeecCCcCCcceecCcCCCCCCCcc
Confidence            467888999999  9999999999999999999987643

>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A

Probab=98.22  E-value=5e-07  Score=50.81  Aligned_cols=30  Identities=27%  Similarity=0.676  Sum_probs=26.4

Q ss_pred             CCCCCcccCCCCCCCccccccccccccCCCCC
Q 031858           55 VRPGDWYCSAGNCGAHNFASRSSCFKCGAFKD   86 (151)
Q Consensus        55 ~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~   86 (151)
                      .++|.|+|+  .|.++|.+...+|..|.+|||
T Consensus         3 ~~~g~W~C~--~C~~~N~~~~~kC~aC~tpkP   32 (33)
T 3gj3_B            3 LGSGTWDCD--TCLVQNKPEAVKCVACETPKP   32 (33)
T ss_dssp             ---CCEECT--TTCCEECTTCSBCTTTCCBCC
T ss_pred             CCCCceeCC--cccCCCccccCEEcccCCCCC
Confidence            467999999  999999999999999999997

>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.20  E-value=1.3e-06  Score=52.84  Aligned_cols=36  Identities=25%  Similarity=0.546  Sum_probs=32.1

Q ss_pred             CCCCCCCceEEeCCCCCcccccccccccCCCCCCCCCC
Q 031858          110 RSGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFGN  147 (151)
Q Consensus       110 ~~~~~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~~~  147 (151)
                      +...++|.|+|.  .|.+.|.+.+.+|+.|++||+...
T Consensus         4 ~~~~~~g~W~C~--~C~v~N~a~~~kC~aCetpKpgs~   39 (47)
T 2ebq_A            4 GSSGVIGTWDCD--TCLVQNKPEAIKCVACETPKPGTC   39 (47)
T ss_dssp             SCCCCSSSEECS--SSCCEECSSCSBCSSSCCBCSCSS
T ss_pred             CcCCCCCceECC--eeeccCccCCceecCcCCCCCCCc
Confidence            345678999999  899999999999999999999764

>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.13  E-value=3e-06  Score=53.22  Aligned_cols=39  Identities=33%  Similarity=0.664  Sum_probs=35.4

Q ss_pred             CcCcCCCCCCCCCCcccCCCCCCCccccccccccccCCCCC
Q 031858           46 SFGFGTGSDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKD   86 (151)
Q Consensus        46 ~~g~~~~~~~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~   86 (151)
                      ..||+..+.++.|.|+|.  .|.++|.+...+|+.|++|+|
T Consensus        18 ~~gfg~~FK~~~GsWeC~--~C~V~N~a~~~kC~ACetpKP   56 (57)
T 2ebv_A           18 TLGFGDKFKRPIGSWECS--VCCVSNNAEDNKCVSCMSEKP   56 (57)
T ss_dssp             CCSCCSCCCCCSSSCCCS--SSCCCCCSSCSBCSSSCCBCC
T ss_pred             CCCHHHhcCCCCCeeeCC--eeEccCccCCceeeEcCCcCC
Confidence            345777789999999999  999999999999999999997

>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.93  E-value=1.2e-05  Score=50.47  Aligned_cols=35  Identities=23%  Similarity=0.506  Sum_probs=32.8

Q ss_pred             CCCCCCCCceEEeCCCCCcccccccccccCCCCCCCC
Q 031858          109 NRSGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDF  145 (151)
Q Consensus       109 ~~~~~~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~  145 (151)
                      ..+..+.|.|.|.  .|.+.|-+...+|+.|++|||.
T Consensus        23 ~~FK~~~GsWeC~--~C~V~N~a~~~kC~ACetpKPG   57 (57)
T 2ebv_A           23 DKFKRPIGSWECS--VCCVSNNAEDNKCVSCMSEKPG   57 (57)
T ss_dssp             SCCCCCSSSCCCS--SSCCCCCSSCSBCSSSCCBCCC
T ss_pred             HhcCCCCCeeeCC--eeEccCccCCceeeEcCCcCCC
Confidence            6788899999999  8999999999999999999984

>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.73  E-value=2.2e-05  Score=48.52  Aligned_cols=31  Identities=23%  Similarity=0.610  Sum_probs=28.3

Q ss_pred             CCCCeEeCCCCcccccccccccccCCCCCCC
Q 031858            3 RPGDWNCRSCQHLNFQRRDSCQRCGDPRSSG   33 (151)
Q Consensus         3 k~gdW~C~~C~~~N~~~~~~C~~C~~pkp~~   33 (151)
                      .++.|.|+.|.++|......|..|.+||+..
T Consensus         8 ~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s   38 (53)
T 2d9g_A            8 DEGYWDCSVCTFRNSAEAFKCMMCDVRKGTS   38 (53)
T ss_dssp             CCCCEECSSSCCEECSSCSSCSSSCCCCCCC
T ss_pred             CCCCcCCCCCccCCCCCCCccCCCCCcCCcc
Confidence            4578999999999999999999999999853

>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.64  E-value=5e-05  Score=46.92  Aligned_cols=33  Identities=24%  Similarity=0.615  Sum_probs=29.2

Q ss_pred             CCCCCceEEeCCCCCcccccccccccCCCCCCCCC
Q 031858          112 GWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFG  146 (151)
Q Consensus       112 ~~~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~~  146 (151)
                      ....+.|.|+  .|.++|.+....|.+|..||+..
T Consensus         6 ~~~~~~W~C~--~CT~~N~~~~~~C~~C~~pr~~s   38 (53)
T 2d9g_A            6 SGDEGYWDCS--VCTFRNSAEAFKCMMCDVRKGTS   38 (53)
T ss_dssp             SSCCCCEECS--SSCCEECSSCSSCSSSCCCCCCC
T ss_pred             CCCCCCcCCC--CCccCCCCCCCccCCCCCcCCcc
Confidence            3456789999  89999999999999999999853

>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C

Probab=97.18  E-value=0.00024  Score=39.62  Aligned_cols=28  Identities=36%  Similarity=0.914  Sum_probs=25.9

Q ss_pred             CCCeEeCCCCcccccccccccccCCCCC
Q 031858            4 PGDWNCRSCQHLNFQRRDSCQRCGDPRS   31 (151)
Q Consensus         4 ~gdW~C~~C~~~N~~~~~~C~~C~~pkp   31 (151)
                      ...|.|+.|.++|......|..|..+|+
T Consensus         6 ~~~W~C~~CT~~N~~~~~~Ce~C~~~r~   33 (34)
T 3a9j_C            6 GAQWNCTACTFLNHPALIRCEQCEMPRH   33 (34)
T ss_dssp             CCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred             CCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence            3589999999999999999999999986

>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A

Probab=97.02  E-value=0.00045  Score=37.71  Aligned_cols=27  Identities=30%  Similarity=0.866  Sum_probs=25.1

Q ss_pred             CCCeEeCCCCcccccccccccccCCCC
Q 031858            4 PGDWNCRSCQHLNFQRRDSCQRCGDPR   30 (151)
Q Consensus         4 ~gdW~C~~C~~~N~~~~~~C~~C~~pk   30 (151)
                      ...|.|+.|.++|......|..|.+|+
T Consensus         4 ~~~W~C~~CTf~N~~~~~~Ce~C~~~r   30 (31)
T 1nj3_A            4 SAMWACQHCTFMNQPGTGHCEMCSLPR   30 (31)
T ss_dssp             SCCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred             CccccCCcccccCCCCCCccCCcCCCC
Confidence            458999999999999999999999987

>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C

Probab=96.78  E-value=0.0008  Score=37.47  Aligned_cols=28  Identities=32%  Similarity=0.871  Sum_probs=25.8

Q ss_pred             CCceEEeCCCCCcccccccccccCCCCCCC
Q 031858          115 SGDWICTRSGCNEHNFASRMECFRCNAPRD  144 (151)
Q Consensus       115 ~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~  144 (151)
                      ...|.|+  .|.++|.+....|.+|..+|+
T Consensus         6 ~~~W~C~--~CT~~N~~~~~~Ce~C~~~r~   33 (34)
T 3a9j_C            6 GAQWNCT--ACTFLNHPALIRCEQCEMPRH   33 (34)
T ss_dssp             CCCEECT--TTCCEECTTCSBCTTTCCBSC
T ss_pred             CCcCCCC--CCccccCCCCCeeCCCCCcCc
Confidence            3579999  899999999999999999986

>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A

Probab=96.71  E-value=0.0014  Score=35.71  Aligned_cols=27  Identities=33%  Similarity=0.716  Sum_probs=24.9

Q ss_pred             CCceEEeCCCCCcccccccccccCCCCCC
Q 031858          115 SGDWICTRSGCNEHNFASRMECFRCNAPR  143 (151)
Q Consensus       115 ~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk  143 (151)
                      ...|.|+  .|.++|......|.+|..++
T Consensus         4 ~~~W~C~--~CTf~N~~~~~~Ce~C~~~r   30 (31)
T 1nj3_A            4 SAMWACQ--HCTFMNQPGTGHCEMCSLPR   30 (31)
T ss_dssp             SCCEECS--SSCCEECSSCSSCSSSCCCC
T ss_pred             CccccCC--cccccCCCCCCccCCcCCCC
Confidence            3579999  89999999999999999987

>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*

Probab=96.27  E-value=0.0027  Score=40.53  Aligned_cols=28  Identities=29%  Similarity=0.832  Sum_probs=26.5

Q ss_pred             CeEeCCCCcccccccccccccCCCCCCC
Q 031858            6 DWNCRSCQHLNFQRRDSCQRCGDPRSSG   33 (151)
Q Consensus         6 dW~C~~C~~~N~~~~~~C~~C~~pkp~~   33 (151)
                      .|.|+.|.++|......|-.|.++++..
T Consensus         8 ~W~CP~CTf~N~p~~p~CEmC~~prp~~   35 (64)
T 3b08_B            8 GWQCPGCTFINKPTRPGCEMCCRARPET   35 (64)
T ss_dssp             SEECTTTCCEECTTCSBCTTTCCBCCSS
T ss_pred             CCcCCCccccCCCCCCccCcCCCCCCcc
Confidence            7999999999999999999999999864

>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}

Probab=95.76  E-value=0.0098  Score=36.36  Aligned_cols=30  Identities=30%  Similarity=0.593  Sum_probs=27.2

Q ss_pred             CCceEEeCCCCCcccccccccccCCCCCCCCC
Q 031858          115 SGDWICTRSGCNEHNFASRMECFRCNAPRDFG  146 (151)
Q Consensus       115 ~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~~  146 (151)
                      ...|.|+  .|.++|-.....|.+|..+++..
T Consensus         8 ~~~W~Cp--~CTf~N~p~~~~CemC~~prp~~   37 (52)
T 2crc_A            8 PVGWQCP--GCTFINKPTRPGCEMCCRARPEA   37 (52)
T ss_dssp             SSSBCCT--TTCCCBCTTCSSCSSSCCCCCTT
T ss_pred             CCCccCC--CcccccCCCCCeeCCCCCcCCcc
Confidence            3479999  89999999999999999999864

>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}

Probab=95.46  E-value=0.017  Score=35.23  Aligned_cols=30  Identities=27%  Similarity=0.672  Sum_probs=27.2

Q ss_pred             CCCcccCCCCCCCccccccccccccCCCCCCC
Q 031858           57 PGDWYCSAGNCGAHNFASRSSCFKCGAFKDDV   88 (151)
Q Consensus        57 ~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~~~   88 (151)
                      ...|.|+  .|.++|-.....|.+|..+++..
T Consensus         8 ~~~W~Cp--~CTf~N~p~~~~CemC~~prp~~   37 (52)
T 2crc_A            8 PVGWQCP--GCTFINKPTRPGCEMCCRARPEA   37 (52)
T ss_dssp             SSSBCCT--TTCCCBCTTCSSCSSSCCCCCTT
T ss_pred             CCCccCC--CcccccCCCCCeeCCCCCcCCcc
Confidence            3489999  99999999999999999999864

>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*

Probab=95.22  E-value=0.012  Score=37.47  Aligned_cols=30  Identities=30%  Similarity=0.575  Sum_probs=27.3

Q ss_pred             CCceEEeCCCCCcccccccccccCCCCCCCCC
Q 031858          115 SGDWICTRSGCNEHNFASRMECFRCNAPRDFG  146 (151)
Q Consensus       115 ~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~~  146 (151)
                      ...|.|+  .|.++|-.....|.+|.++++..
T Consensus         6 ~~~W~CP--~CTf~N~p~~p~CEmC~~prp~~   35 (64)
T 3b08_B            6 PVGWQCP--GCTFINKPTRPGCEMCCRARPET   35 (64)
T ss_dssp             CCSEECT--TTCCEECTTCSBCTTTCCBCCSS
T ss_pred             CCCCcCC--CccccCCCCCCccCcCCCCCCcc
Confidence            3479999  89999999999999999999875

>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A

Probab=93.62  E-value=0.041  Score=32.67  Aligned_cols=27  Identities=33%  Similarity=0.801  Sum_probs=25.1

Q ss_pred             CCeEeCCCCcccccccccccccCCCCC
Q 031858            5 GDWNCRSCQHLNFQRRDSCQRCGDPRS   31 (151)
Q Consensus         5 gdW~C~~C~~~N~~~~~~C~~C~~pkp   31 (151)
                      ..|.|++|...|......|.+|-+-|.
T Consensus        12 D~WkC~~C~~~N~Pl~r~C~rCw~LRk   38 (46)
T 2c6a_A           12 DYWKCTSCNEMNPPLPSHCNRCWALRE   38 (46)
T ss_dssp             GCEECTTTCCEECSSCSSCTTTCCCCS
T ss_pred             ceEecccccccCCCccchhhHHHhhcc
Confidence            579999999999999999999999875

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54

Probab=90.65  E-value=0.047  Score=48.08  Aligned_cols=81  Identities=17%  Similarity=0.275  Sum_probs=0.0

Q ss_pred             CCeEeCCCCcccccc---------cccccccCCCCCCCCCC-CCCCCCCCCCcCcCCCCCCCCCCcccCCCCCCCccccc
Q 031858            5 GDWNCRSCQHLNFQR---------RDSCQRCGDPRSSGDFC-GFGGRGGGSSFGFGTGSDVRPGDWYCSAGNCGAHNFAS   74 (151)
Q Consensus         5 gdW~C~~C~~~N~~~---------~~~C~~C~~pkp~~~~~-~~~g~~~~~~~g~~~~~~~~~gdW~C~~~~C~~~N~a~   74 (151)
                      ..|+|+-|.|.|-..         .-.|..|+-+.+..... .-....................+=.|+  .|.+.|.++
T Consensus       116 ~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~~~~~~~~~~~~~~~~~~~~CP--~CTF~NHPs  193 (566)
T 1w7p_D          116 STWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICP--ACTFANHPQ  193 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceeccccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccccCCCcccCccccccccCCCCC--cccccCChh
Confidence            479999999999852         23699999876543110 000000000000000011112356798  999999999


Q ss_pred             cccccccCCCCCC
Q 031858           75 RSSCFKCGAFKDD   87 (151)
Q Consensus        75 r~~C~~C~~~~~~   87 (151)
                      -..|..|+++.+.
T Consensus       194 l~~CEiCg~~L~~  206 (566)
T 1w7p_D          194 IGNCEICGHRLPN  206 (566)
T ss_dssp             -------------
T ss_pred             hhcccccCCcCCC
Confidence            9999999999876

>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A

Probab=90.47  E-value=0.17  Score=30.00  Aligned_cols=29  Identities=41%  Similarity=0.738  Sum_probs=25.7

Q ss_pred             CCceEEeCCCCCcccccccccccCCCCCCCC
Q 031858          115 SGDWICTRSGCNEHNFASRMECFRCNAPRDF  145 (151)
Q Consensus       115 ~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~  145 (151)
                      +..|.|.  .|..+|.+-...|++|-+-|..
T Consensus        11 ~D~WkC~--~C~~~N~Pl~r~C~rCw~LRk~   39 (46)
T 2c6a_A           11 ADYWKCT--SCNEMNPPLPSHCNRCWALREN   39 (46)
T ss_dssp             GGCEECT--TTCCEECSSCSSCTTTCCCCSS
T ss_pred             cceEecc--cccccCCCccchhhHHHhhccc
Confidence            4779999  8999999999999999887753

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54

Probab=87.22  E-value=0.11  Score=45.63  Aligned_cols=83  Identities=18%  Similarity=0.330  Sum_probs=0.0

Q ss_pred             CCCCcccCCCCCCCccccc---------cccccccCCCCCCCCC-CCCCCCCCCCccCCCCCCCCCCCCCCceEEeCCCC
Q 031858           56 RPGDWYCSAGNCGAHNFAS---------RSSCFKCGAFKDDVAG-GGFDCDMPRSRGSSFGGGNRSGWKSGDWICTRSGC  125 (151)
Q Consensus        56 ~~gdW~C~~~~C~~~N~a~---------r~~C~~C~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~gdW~C~~~~C  125 (151)
                      ....|+|+  -|.+.|-.-         ...|..|+.+.+-... .........  .+ ............+=.|+  .|
T Consensus       114 ~~~tWvC~--ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~~~--~~-~~~~~~~~~~~~~~~CP--~C  186 (566)
T 1w7p_D          114 VVSTWVCP--ICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAI--DP-NANPQNQFGVNSENICP--AC  186 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccceecc--ccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccccC--CC-cccCccccccccCCCCC--cc
Confidence            35689999  999999852         3469999988653221 000000000  00 00000001112345799  89


Q ss_pred             CcccccccccccCCCCCCCC
Q 031858          126 NEHNFASRMECFRCNAPRDF  145 (151)
Q Consensus       126 ~~~Nfa~r~~C~~C~~pk~~  145 (151)
                      .+.|.++-..|.+|+++.+.
T Consensus       187 TF~NHPsl~~CEiCg~~L~~  206 (566)
T 1w7p_D          187 TFANHPQIGNCEICGHRLPN  206 (566)
T ss_dssp             --------------------
T ss_pred             cccCChhhhcccccCCcCCC
Confidence            99999999999999999876

>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1

Probab=85.53  E-value=0.58  Score=28.28  Aligned_cols=26  Identities=31%  Similarity=0.885  Sum_probs=24.3

Q ss_pred             CeEeCCCCcccccccccccccCCCCC
Q 031858            6 DWNCRSCQHLNFQRRDSCQRCGDPRS   31 (151)
Q Consensus         6 dW~C~~C~~~N~~~~~~C~~C~~pkp   31 (151)
                      -|.|+.|.-.|-.-...|.+|-+-|.
T Consensus        11 ~WkC~~C~k~N~Pl~ryC~rCwaLRk   36 (53)
T 2cr8_A           11 EWQCTECKKFNSPSKRYCFRCWALRK   36 (53)
T ss_dssp             CEECSSSCCEECSSCCBCTTTCCBCC
T ss_pred             eeecccccccCCCccchhHHHHHhhc
Confidence            59999999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	151
d1n0za_	45	g.41.11.1 (A:) Znf265, first zinc-finger domain {H	8e-08
d1n0za_	45	g.41.11.1 (A:) Znf265, first zinc-finger domain {H	4e-07
d1n0za_	45	g.41.11.1 (A:) Znf265, first zinc-finger domain {H	2e-04

>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Znf265, first zinc-finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (104), Expect = 8e-08
 Identities = 14/34 (41%), Positives = 15/34 (44%)

Query: 113 WKSGDWICTRSGCNEHNFASRMECFRCNAPRDFG 146
              GDWIC    C   NFA R  C RC   +  G
Sbjct: 10  VSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43

>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Znf265, first zinc-finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 4e-07
 Identities = 16/34 (47%), Positives = 18/34 (52%)

Query: 54 DVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDD 87
           V  GDW C    CG  NFA R+SC +CG  K  
Sbjct: 9  RVSDGDWICPDKKCGNVNFARRTSCDRCGREKTT 42

>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Znf265, first zinc-finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 2e-04
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 3  RPGDWNCR--SCQHLNFQRRDSCQRCGDPRSSG 33
            GDW C    C ++NF RR SC RCG  +++G
Sbjct: 11 SDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d1n0za_	45	Znf265, first zinc-finger domain {Human (Homo sapi	99.33
d1n0za_	45	Znf265, first zinc-finger domain {Human (Homo sapi	99.3
d2gqea1	29	Nuclear pore complex protein nup153 {Human (Homo s	98.41
d2gqea1	29	Nuclear pore complex protein nup153 {Human (Homo s	97.97
d1q5wa_	31	Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.96
d1q5wa_	31	Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.81
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	85.61
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	84.94
d2c6aa1	46	MDM2 {Human (Homo sapiens) [TaxId: 9606]}	82.04

>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Znf265, first zinc-finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4e-13  Score=79.44  Aligned_cols=38  Identities=37%  Similarity=0.814  Sum_probs=34.1

Q ss_pred             CCCCCCCCceEEeCCCCCcccccccccccCCCCCCCCC
Q 031858          109 NRSGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFG  146 (151)
Q Consensus       109 ~~~~~~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~~  146 (151)
                      ..+..++|||+|+++.|+++||++|++|++|++||+++
T Consensus         6 ~n~~~~~GDW~C~~~~C~~~NFa~R~~C~rC~~~r~~g   43 (45)
T d1n0za_           6 KNFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG   43 (45)
T ss_dssp             SSCSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred             CCCCCCCCCccCCCCCCCCeeccccCcccCCCCcCCCC
Confidence            34678899999987789999999999999999999875

>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Znf265, first zinc-finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=8.3e-13  Score=78.06  Aligned_cols=37  Identities=43%  Similarity=0.867  Sum_probs=33.6

Q ss_pred             CCCCCCCCcccCCCCCCCccccccccccccCCCCCCC
Q 031858           52 GSDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDV   88 (151)
Q Consensus        52 ~~~~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~~~   88 (151)
                      .+.+++|||+|+++.|+++||++|++|++|+++|++.
T Consensus         7 n~~~~~GDW~C~~~~C~~~NFa~R~~C~rC~~~r~~g   43 (45)
T d1n0za_           7 NFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG   43 (45)
T ss_dssp             SCSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred             CCCCCCCCccCCCCCCCCeeccccCcccCCCCcCCCC
Confidence            3678999999987789999999999999999999864

>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Nuclear pore complex protein nup153
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=6.6e-08  Score=51.49  Aligned_cols=28  Identities=29%  Similarity=0.793  Sum_probs=26.8

Q ss_pred             CCCeEeCCCCcccccccccccccCCCCC
Q 031858            4 PGDWNCRSCQHLNFQRRDSCQRCGDPRS   31 (151)
Q Consensus         4 ~gdW~C~~C~~~N~~~~~~C~~C~~pkp   31 (151)
                      -|.|+|..|.++|.++.++|..|++|||
T Consensus         2 ~GsWeC~~C~v~N~~~~~~CvAC~tpkP   29 (29)
T d2gqea1           2 IGTWDCDTCLVQNKPEAIKCVACETPKP   29 (29)
T ss_dssp             CCCEECSSSCCEECTTCSBCSSSCCBCC
T ss_pred             cceeECCceEeEChhhCCEEeecCCCCC
Confidence            3899999999999999999999999997

>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Nuclear pore complex protein nup153
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.6e-06  Score=45.92  Aligned_cols=27  Identities=30%  Similarity=0.726  Sum_probs=26.0

Q ss_pred             CCcccCCCCCCCccccccccccccCCCCC
Q 031858           58 GDWYCSAGNCGAHNFASRSSCFKCGAFKD   86 (151)
Q Consensus        58 gdW~C~~~~C~~~N~a~r~~C~~C~~~~~   86 (151)
                      |.|+|.  .|.++|-+..+.|..|++|||
T Consensus         3 GsWeC~--~C~v~N~~~~~~CvAC~tpkP   29 (29)
T d2gqea1           3 GTWDCD--TCLVQNKPEAIKCVACETPKP   29 (29)
T ss_dssp             CCEECS--SSCCEECTTCSBCSSSCCBCC
T ss_pred             ceeECC--ceEeEChhhCCEEeecCCCCC
Confidence            799999  999999999999999999987

>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Npl4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.96  E-value=0.0021  Score=33.37  Aligned_cols=27  Identities=30%  Similarity=0.866  Sum_probs=25.0

Q ss_pred             CCCeEeCCCCcccccccccccccCCCC
Q 031858            4 PGDWNCRSCQHLNFQRRDSCQRCGDPR   30 (151)
Q Consensus         4 ~gdW~C~~C~~~N~~~~~~C~~C~~pk   30 (151)
                      ...|.|..|.++|...-..|-.|.-||
T Consensus         4 samWsC~HCTf~N~pgtd~CeMC~LPr   30 (31)
T d1q5wa_           4 SAMWACQHCTFMNQPGTGHCEMCSLPR   30 (31)
T ss_dssp             CCCEECSSSCCEECTTCSBCTTTCCBC
T ss_pred             cceeEeeeeeeecCCCCCcchhhccCC
Confidence            357999999999999999999999987

>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Npl4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.81  E-value=0.0072  Score=31.24  Aligned_cols=26  Identities=23%  Similarity=0.602  Sum_probs=24.2

Q ss_pred             CCcccCCCCCCCccccccccccccCCCC
Q 031858           58 GDWYCSAGNCGAHNFASRSSCFKCGAFK   85 (151)
Q Consensus        58 gdW~C~~~~C~~~N~a~r~~C~~C~~~~   85 (151)
                      --|.|.  .|.++|-+.-..|.+|.-|+
T Consensus         5 amWsC~--HCTf~N~pgtd~CeMC~LPr   30 (31)
T d1q5wa_           5 AMWACQ--HCTFMNQPGTGHCEMCSLPR   30 (31)
T ss_dssp             CCEECS--SSCCEECTTCSBCTTTCCBC
T ss_pred             ceeEee--eeeeecCCCCCcchhhccCC
Confidence            479999  99999999999999999886

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.61  E-value=0.21  Score=26.88  Aligned_cols=27  Identities=22%  Similarity=0.642  Sum_probs=21.7

Q ss_pred             CCeEeCCCCccccccc-ccccccCCCCC
Q 031858            5 GDWNCRSCQHLNFQRR-DSCQRCGDPRS   31 (151)
Q Consensus         5 gdW~C~~C~~~N~~~~-~~C~~C~~pkp   31 (151)
                      --|.|+.|+++-.... ..|..|++|+.
T Consensus         4 ~~~~C~vCG~i~~g~~P~~CPvCg~~~~   31 (37)
T d1nnqa2           4 KVYICPICGYTAVDEAPEYCPVCGAPKE   31 (37)
T ss_dssp             CEEECTTTCCEEESCCCSBCTTTCCBGG
T ss_pred             cEEECCCCCCEecCCCCCcCCCCCCcHH
Confidence            3699999999876543 68999999874

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=84.94  E-value=0.25  Score=26.42  Aligned_cols=26  Identities=19%  Similarity=0.430  Sum_probs=21.4

Q ss_pred             CeEeCCCCccccc-ccccccccCCCCC
Q 031858            6 DWNCRSCQHLNFQ-RRDSCQRCGDPRS   31 (151)
Q Consensus         6 dW~C~~C~~~N~~-~~~~C~~C~~pkp   31 (151)
                      -|.|+.|+++-.. -..+|..|++|+.
T Consensus         5 ~~vC~vCGyi~~g~~Pe~CPvCg~~~~   31 (36)
T d1yuza2           5 FHLCPICGYIHKGEDFEKCPICFRPKD   31 (36)
T ss_dssp             EEECSSSCCEEESSCCSBCTTTCCBGG
T ss_pred             EEECCCCCCEeeCCCCCcCCCCCCcHH
Confidence            5999999998664 5678999999874

>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: MDM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.04  E-value=0.42  Score=26.75  Aligned_cols=27  Identities=33%  Similarity=0.801  Sum_probs=24.4

Q ss_pred             CCeEeCCCCcccccccccccccCCCCC
Q 031858            5 GDWNCRSCQHLNFQRRDSCQRCGDPRS   31 (151)
Q Consensus         5 gdW~C~~C~~~N~~~~~~C~~C~~pkp   31 (151)
                      .-|.|++|.-.|-.....|.+|=+-|.
T Consensus        12 D~WkC~~C~~~N~Pl~ryC~rCWaLR~   38 (46)
T d2c6aa1          12 DYWKCTSCNEMNPPLPSHCNRCWALRE   38 (46)
T ss_dssp             GCEECTTTCCEECSSCSSCTTTCCCCS
T ss_pred             hhccCccccccCCcchhHhHHHHHHhh
Confidence            359999999999999999999998774