Citrus Sinensis ID: 031861

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHPESENV
Secondary Structure (PSIPRED)
cEEEEHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccHHHHHHHHHHHHHHHHHEEEEEEEEcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFrrkstdgfsiGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISsklskdggvepllkssdhpesenv
Flexible Loop (DISEMBL)
MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISsklskdggvepllkssdhpesenv
Low Complexity Region (SEG)
MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTllslvsvvfdllfICQHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHPESENV
Disordered region (IsUnstruct)
**IVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVI*************************
Disordered Region (DISOPRED)
MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLY********************************
Disordered Region (DISEMBL)
MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISSKLSKDGGVEPL************
Disordered Region (DISPRO)
MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAK*****************************
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHPESENV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
P57758	270	Cystinosin homolog OS=Ara	yes	no	0.953	0.533	0.662	5e-51
Q54WT7	284	Cystinosin homolog OS=Dic	yes	no	0.821	0.436	0.424	2e-23
Q9VCR7	397	Cystinosin homolog OS=Dro	yes	no	0.827	0.314	0.424	3e-23
A8WN56	403	Cystinosin homolog OS=Cae	N/A	no	0.774	0.290	0.415	2e-20
Q09500	404	Cystinosin homolog OS=Cae	yes	no	0.576	0.215	0.528	4e-20
O60931	367	Cystinosin OS=Homo sapien	yes	no	0.774	0.318	0.432	8e-20
A7MB63	367	Cystinosin OS=Bos taurus	yes	no	0.708	0.291	0.429	1e-19
P57757	367	Cystinosin OS=Mus musculu	yes	no	0.821	0.337	0.4	1e-18
P17261	260	Cystine transporter OS=Sa	yes	no	0.629	0.365	0.408	1e-09

>sp|P57758|CTNS_ARATH Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1

 Score =  199 bits (506), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 96/145 (66%), Positives = 114/145 (78%), Gaps = 1/145 (0%)

Query: 1   MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFS 60
           + IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKST G+S
Sbjct: 125 IGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKSTVGWS 184

Query: 61  IGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYP 120
           IGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKTLLSL+S+ FD+LF+ QHYVLYP
Sbjct: 185 IGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHYVLYP 244

Query: 121 AKKAVISSKLSKDGGVEPLLKSSDH 145
            KK   S +  ++   EPL+ SS  
Sbjct: 245 EKKVSKSPETGEESN-EPLIDSSHE 268

Thought to transport cystine out of lysosomes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54WT7|CTNS_DICDI Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1

 Score =  108 bits (269), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 82/125 (65%), Gaps = 1/125 (0%)

Query: 1   MAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGF 59
           + I +++W++  V   +   N  +WLW+IN+++ +++ +T IKYIPQA +NF+ KST G+
Sbjct: 118 IGIATLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNKSTSGW 177

Query: 60  SIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLY 119
           S+ N+LLDF GG  +  QM +   D  +W  F G+  K  LSL S+ FD+LFI QHY+LY
Sbjct: 178 SVHNVLLDFSGGVLSLLQMFLDVADSGNWNIFTGDPVKLGLSLFSIAFDILFIIQHYILY 237

Query: 120 PAKKA 124
              K+
Sbjct: 238 RNPKS 242

Thought to transport cystine out of lysosomes.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9VCR7|CTNS_DROME Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 79/125 (63%)

Query: 24  WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSI 83
           WL  + + + +++ +T+IKY+PQA+MN+RRKST G+SIGNILLDF GG  +  QMI+ + 
Sbjct: 267 WLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTSGWSIGNILLDFTGGTLSMLQMILNAH 326

Query: 84  DQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISSKLSKDGGVEPLLKSS 143
           + + WV+ +G+  K  L L SV+FD+ F+ QHYV Y   +   SS L+    V+     S
Sbjct: 327 NYDDWVSIFGDPTKFGLGLFSVLFDVFFMLQHYVFYRHSRESSSSDLTTVTDVQNRTNES 386

Query: 144 DHPES 148
             P  
Sbjct: 387 PPPSE 391

Thought to transport cystine out of lysosomes.

Drosophila melanogaster (taxid: 7227)

>sp|A8WN56|CTNS_CAEBR Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 74/118 (62%), Gaps = 1/118 (0%)

Query: 34  IQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYG 93
           I++ +T  KY PQA  N++RKST G+SIGNILLDF GG  +  QM++Q+I+ N W  FY 
Sbjct: 273 IKMAVTCCKYFPQAYFNYQRKSTVGWSIGNILLDFTGGSLDILQMVLQAINVNDWSAFYA 332

Query: 94  NIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISSKLSKDG-GVEPLLKSSDHPESEN 150
           N  K  L  VS+ FD++F+ QHY LYP  +   +     D    + +++ ++H  ++N
Sbjct: 333 NPVKFGLGFVSIFFDIIFMIQHYALYPDAEVPHNEYHGVDNPDPDSIVRDAEHGAADN 390

Thought to transport cystine out of lysosomes. May play a role in the degradation of engulfed apoptotic cells.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q09500|CTNS_CAEEL Cystinosin homolog OS=Caenorhabditis elegans GN=ctns-1 PE=3 SV=2

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 61/87 (70%)

Query: 34  IQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYG 93
           I++ +T  KY PQA  N+ RKST G+SIGNI+LDF GG  +  QMI+Q+++ N W  FY 
Sbjct: 274 IKMAVTCCKYFPQAYFNYTRKSTVGWSIGNIMLDFTGGTLDILQMILQAVNVNDWSAFYA 333

Query: 94  NIGKTLLSLVSVVFDLLFICQHYVLYP 120
           N  K  L  VS+ FD++F+ QHYVLYP
Sbjct: 334 NPVKFGLGFVSIFFDIIFMVQHYVLYP 360

Thought to transport cystine out of lysosomes (By similarity). May play a role in the degradation of engulfed apoptotic cells.

Caenorhabditis elegans (taxid: 6239)

>sp|O60931|CTNS_HUMAN Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2

 Score = 95.9 bits (237), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 1/118 (0%)

Query: 8   WLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILL 66
           WL A V   VA     +WL  +  F+ I++ +TL+KY PQA MNF  KST+G+SIGN+LL
Sbjct: 245 WLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKSTEGWSIGNVLL 304

Query: 67  DFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKA 124
           DF GG  +  QM +QS + + W   +G+  K  L + S+VFD++F  QH+ LY  +  
Sbjct: 305 DFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFFIQHFCLYRKRPG 362

Thought to transport cystine out of lysosomes.

Homo sapiens (taxid: 9606)

>sp|A7MB63|CTNS_BOVIN Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 69/107 (64%)

Query: 18  ALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQ 77
           A+   +WL  +  F+ I++ +TL+KY PQA MNF  KST+G+SIGN+LLDF GG  +  Q
Sbjct: 256 AVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKSTEGWSIGNVLLDFTGGSFSLLQ 315

Query: 78  MIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKA 124
           M +QS + + W   +G+  K  L + S++FD++F  QH+ LY  K  
Sbjct: 316 MFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDVVFFIQHFCLYRKKPG 362

Thought to transport cystine out of lysosomes.

Bos taurus (taxid: 9913)

>sp|P57757|CTNS_MOUSE Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 73/125 (58%), Gaps = 1/125 (0%)

Query: 1   MAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGF 59
           +  + + WL   V   VA     +WL  +  F+ I++I+TLIKY PQA MNF  KST G+
Sbjct: 238 IGFLVLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGW 297

Query: 60  SIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLY 119
           SIG +LLDF GG  +  QM +QS + + W   +G+  K  L + ++ FD++F  QH+ LY
Sbjct: 298 SIGGVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFTIFFDVVFFIQHFYLY 357

Query: 120 PAKKA 124
             K  
Sbjct: 358 RKKPG 362

Thought to transport cystine out of lysosomes.

Mus musculus (taxid: 10090)

>sp|P17261|ERS1_YEAST Cystine transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERS1 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 3/98 (3%)

Query: 34  IQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQ-SIDQN-SWVNF 91
           +++ M+LIKYIPQ   N  RKS D F I  + LD  GG  +  Q+I Q S DQ  S   F
Sbjct: 161 LKISMSLIKYIPQVTHNSTRKSMDCFPIQGVFLDVTGGIASLLQLIWQLSNDQGFSLDTF 220

Query: 92  YGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISSK 129
             N GK  LS+V+++F+ +FI Q +V Y ++   ++S+
Sbjct: 221 VTNFGKVGLSMVTLIFNFIFIMQWFV-YRSRGHDLASE 257

Transport cystine out of vacuoles/endodomes.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
224141271	274	predicted protein [Populus trichocarpa]	0.986	0.543	0.743	3e-58
449450036	274	PREDICTED: cystinosin homolog [Cucumis s	0.993	0.547	0.701	7e-57
356558783	193	PREDICTED: cystinosin homolog [Glycine m	0.980	0.766	0.692	3e-54
356558785	277	PREDICTED: cystinosin homolog [Glycine m	0.980	0.534	0.692	5e-54
388517027	277	unknown [Medicago truncatula]	1.0	0.545	0.686	7e-54
225452224	274	PREDICTED: cystinosin homolog [Vitis vin	0.993	0.547	0.688	1e-53
255645877	193	unknown [Glycine max]	0.980	0.766	0.685	5e-53
388506624	277	unknown [Lotus japonicus]	1.0	0.545	0.653	1e-52
255571996	244	cystinosin, putative [Ricinus communis]	0.913	0.565	0.721	6e-52
359488646	255	PREDICTED: cystinosin homolog [Vitis vin	0.821	0.486	0.774	7e-52

>gi|224141271|ref|XP_002323998.1| predicted protein [Populus trichocarpa] gi|118485298|gb|ABK94508.1| unknown [Populus trichocarpa] gi|222867000|gb|EEF04131.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 113/152 (74%), Positives = 130/152 (85%), Gaps = 3/152 (1%)

Query: 1   MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFS 60
           +A V VVWL AAVCFF+ALP+HSWLWLI+ FN+IQV MT+IKYIPQ IMNF RKSTDGFS
Sbjct: 125 IATVCVVWLVAAVCFFIALPSHSWLWLISIFNSIQVFMTVIKYIPQVIMNFMRKSTDGFS 184

Query: 61  IGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYP 120
           IGNILLD LGG TNY+QM VQSIDQNSWVNFYGNIGKTLLSLVS+ FDL+F+CQHY+LYP
Sbjct: 185 IGNILLDCLGGVTNYAQMAVQSIDQNSWVNFYGNIGKTLLSLVSIFFDLVFMCQHYILYP 244

Query: 121 AKKAVISSKLSKDGGVEPLLKSSDHPES-ENV 151
             KAV   KL+K+ G EPL++ S+ P + ENV
Sbjct: 245 ENKAV-PPKLNKE-GTEPLIRFSEEPAAPENV 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450036|ref|XP_004142770.1| PREDICTED: cystinosin homolog [Cucumis sativus] gi|449483821|ref|XP_004156702.1| PREDICTED: cystinosin homolog [Cucumis sativus]

 Score =  224 bits (572), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 124/151 (82%), Gaps = 1/151 (0%)

Query: 1   MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFS 60
           + IV VVW+ AA+CFF+ L +HSWLWLI+ FN+IQV MT IKYIPQAIMNF RKSTDGFS
Sbjct: 125 LTIVIVVWIFAAICFFIGLSSHSWLWLISIFNSIQVFMTAIKYIPQAIMNFLRKSTDGFS 184

Query: 61  IGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYP 120
           IGNILLDFLGG  NY+QM VQSIDQNSWVNFYGNIGKTLLSL+S+ FDLLF+ QHYVLYP
Sbjct: 185 IGNILLDFLGGLANYAQMAVQSIDQNSWVNFYGNIGKTLLSLISIFFDLLFMLQHYVLYP 244

Query: 121 AKKAVISSKLSKDGGVEPLLKSSDHPESENV 151
            K+ ++S K + D   E L+   D P+SE+V
Sbjct: 245 GKRPIVSQK-ADDKTREALIAPPDRPQSEDV 274

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558783|ref|XP_003547682.1| PREDICTED: cystinosin homolog [Glycine max]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 108/156 (69%), Positives = 122/156 (78%), Gaps = 8/156 (5%)

Query: 1   MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFS 60
           + IVSV WL AAVCFF+ALPN+SWLWL++ FN IQV+MT IKYIPQA+MNF RKSTDGFS
Sbjct: 41  IGIVSVAWLVAAVCFFIALPNNSWLWLLSVFNTIQVVMTTIKYIPQAVMNFLRKSTDGFS 100

Query: 61  IGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYP 120
           IGNILLDF GG  NY QM+VQSIDQ+SWVNFYGNIGK LLSLVSV FD++FI QHYVLY 
Sbjct: 101 IGNILLDFSGGIANYGQMVVQSIDQDSWVNFYGNIGKVLLSLVSVFFDIIFIIQHYVLYR 160

Query: 121 AKKAVISSKLS-----KDGGVEPLLKSSDHPESENV 151
            KK   SSKL      +D   E L++ SD    ENV
Sbjct: 161 GKK---SSKLEITTEQEDQIREHLVRHSDQSSPENV 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558785|ref|XP_003547683.1| PREDICTED: cystinosin homolog [Glycine max]

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 108/156 (69%), Positives = 122/156 (78%), Gaps = 8/156 (5%)

Query: 1   MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFS 60
           + IVSV WL AAVCFF+ALPN+SWLWL++ FN IQV+MT IKYIPQA+MNF RKSTDGFS
Sbjct: 125 IGIVSVAWLVAAVCFFIALPNNSWLWLLSVFNTIQVVMTTIKYIPQAVMNFLRKSTDGFS 184

Query: 61  IGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYP 120
           IGNILLDF GG  NY QM+VQSIDQ+SWVNFYGNIGK LLSLVSV FD++FI QHYVLY 
Sbjct: 185 IGNILLDFSGGIANYGQMVVQSIDQDSWVNFYGNIGKVLLSLVSVFFDIIFIIQHYVLYR 244

Query: 121 AKKAVISSKLS-----KDGGVEPLLKSSDHPESENV 151
            KK   SSKL      +D   E L++ SD    ENV
Sbjct: 245 GKK---SSKLEITTEQEDQIREHLVRHSDQSSPENV 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517027|gb|AFK46575.1| unknown [Medicago truncatula]

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 105/153 (68%), Positives = 123/153 (80%), Gaps = 2/153 (1%)

Query: 1   MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFS 60
           + IVS+VWL AAVCFFVAL NHSWLWL+N FN+IQV+MT IKYIPQ  MNF RKSTDG+S
Sbjct: 125 IGIVSIVWLTAAVCFFVALSNHSWLWLLNVFNSIQVLMTTIKYIPQVSMNFLRKSTDGWS 184

Query: 61  IGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYP 120
           IGNILLDF GG  NY QM+VQS+DQ+SWVNFYGNIGK LLSLVSV FD++FI QHYVLYP
Sbjct: 185 IGNILLDFSGGIANYGQMVVQSVDQDSWVNFYGNIGKVLLSLVSVFFDIIFIIQHYVLYP 244

Query: 121 AKKA--VISSKLSKDGGVEPLLKSSDHPESENV 151
            KK+  ++++   +D   E L + SD   SENV
Sbjct: 245 DKKSSKLVTTTEDEDQIREHLNRPSDESPSENV 277

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452224|ref|XP_002268329.1| PREDICTED: cystinosin homolog [Vitis vinifera] gi|296081321|emb|CBI17703.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 117/151 (77%), Gaps = 1/151 (0%)

Query: 1   MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFS 60
           + IVS  WL+AAVC  +A P+HSWLWLI+ FN IQV +  IKYIPQA MNFRRKSTDGFS
Sbjct: 125 IGIVSAAWLSAAVCVIIAWPSHSWLWLISVFNTIQVALATIKYIPQAFMNFRRKSTDGFS 184

Query: 61  IGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYP 120
           IGNIL D  GG  NY+QM VQSI+Q SWVNFYGNIGK L+SLVSV FDL+FI QHY+LYP
Sbjct: 185 IGNILFDLSGGVANYAQMTVQSINQGSWVNFYGNIGKLLISLVSVFFDLVFISQHYLLYP 244

Query: 121 AKKAVISSKLSKDGGVEPLLKSSDHPESENV 151
            KK     KL  D   EPL+KS DHP+SENV
Sbjct: 245 GKKVGKCPKLG-DESREPLIKSVDHPQSENV 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645877|gb|ACU23428.1| unknown [Glycine max]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 107/156 (68%), Positives = 121/156 (77%), Gaps = 8/156 (5%)

Query: 1   MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFS 60
           + IVSV WL AAVCFF+ALPN+S LWL++ FN IQV+MT IKYIPQA+MNF RKSTDGFS
Sbjct: 41  IGIVSVAWLVAAVCFFIALPNNSRLWLLSVFNTIQVVMTTIKYIPQAVMNFLRKSTDGFS 100

Query: 61  IGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYP 120
           IGNILLDF GG  NY QM+VQSIDQ+SWVNFYGNIGK LLSLVSV FD++FI QHYVLY 
Sbjct: 101 IGNILLDFSGGIANYGQMVVQSIDQDSWVNFYGNIGKVLLSLVSVFFDIIFIIQHYVLYR 160

Query: 121 AKKAVISSKLS-----KDGGVEPLLKSSDHPESENV 151
            KK   SSKL      +D   E L++ SD    ENV
Sbjct: 161 GKK---SSKLEITTEQEDQIREHLVRHSDQSSPENV 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506624|gb|AFK41378.1| unknown [Lotus japonicus]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 100/153 (65%), Positives = 123/153 (80%), Gaps = 2/153 (1%)

Query: 1   MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFS 60
           + IV V WL AA+CFF+AL +HSWLWL++ FN+IQV MT++KYIPQ IMNF RKSTDGFS
Sbjct: 125 IGIVFVAWLTAAICFFIALSDHSWLWLLSIFNSIQVAMTIVKYIPQVIMNFLRKSTDGFS 184

Query: 61  IGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYP 120
           IGNILLDF GG  NY QM+VQS+DQ+SWVNFYGNIGK LLSLVSV FD++FI QHYVLYP
Sbjct: 185 IGNILLDFSGGIANYGQMVVQSVDQDSWVNFYGNIGKVLLSLVSVFFDIIFIIQHYVLYP 244

Query: 121 AKKA--VISSKLSKDGGVEPLLKSSDHPESENV 151
           AK++  ++++   +D   E L++ SD    ENV
Sbjct: 245 AKRSSKLVTTTDDEDQIREHLVRPSDVSPPENV 277

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571996|ref|XP_002526939.1| cystinosin, putative [Ricinus communis] gi|223533691|gb|EEF35426.1| cystinosin, putative [Ricinus communis]

 Score =  208 bits (529), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 101/140 (72%), Positives = 115/140 (82%), Gaps = 2/140 (1%)

Query: 1   MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFS 60
           +AIV +VW+AAA C FVAL +HSWLWLI+ F++IQV  T IKYIPQAIMNF RKSTDGFS
Sbjct: 97  IAIVCIVWVAAAACLFVALHHHSWLWLISVFSSIQVCTTGIKYIPQAIMNFMRKSTDGFS 156

Query: 61  IGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYP 120
           IGNILLDFLGG TNY+QM  QSIDQ+SWVNFYGNIGKTLLSLVS+ FDLLF+ QHY+LYP
Sbjct: 157 IGNILLDFLGGVTNYAQMAAQSIDQHSWVNFYGNIGKTLLSLVSIFFDLLFMFQHYILYP 216

Query: 121 AKKAV--ISSKLSKDGGVEP 138
           AKK     S +  +D   EP
Sbjct: 217 AKKKKENASPETERDSAAEP 236

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488646|ref|XP_002268255.2| PREDICTED: cystinosin homolog [Vitis vinifera] gi|296081320|emb|CBI17702.3| unnamed protein product [Vitis vinifera]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 96/124 (77%), Positives = 107/124 (86%)

Query: 1   MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFS 60
           + IV   WL+AAVC  +ALPNHSWLWLI+ FN IQV+MT+IKY+PQA MNFRRKSTDGFS
Sbjct: 125 IGIVCAAWLSAAVCVIIALPNHSWLWLISVFNTIQVVMTVIKYVPQAFMNFRRKSTDGFS 184

Query: 61  IGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYP 120
           IGNILLD  GG  NY+QM VQSIDQ+SWVNFYGNIGK LLSLVSV FDL+FICQHY+LYP
Sbjct: 185 IGNILLDLCGGVANYAQMTVQSIDQDSWVNFYGNIGKLLLSLVSVFFDLIFICQHYLLYP 244

Query: 121 AKKA 124
            KKA
Sbjct: 245 GKKA 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
TAIR|locus:2168843	270	AT5G40670 "AT5G40670" [Arabido	0.953	0.533	0.602	9.3e-43
DICTYBASE|DDB_G0279445	284	ctns "cystinosin" [Dictyosteli	0.821	0.436	0.36	2.1e-20
ZFIN|ZDB-GENE-050522-352	384	ctns "cystinosis, nephropathic	0.788	0.309	0.4	3.1e-19
UNIPROTKB|E1BXK0	377	CTNS "Uncharacterized protein"	0.788	0.315	0.383	1.7e-18
FB|FBgn0039045	397	CG17119 [Drosophila melanogast	0.827	0.314	0.380	8.2e-18
UNIPROTKB|F1RLI8	373	CTNS "Uncharacterized protein"	0.814	0.329	0.370	8.3e-17
UNIPROTKB|O60931	367	CTNS "Cystinosin" [Homo sapien	0.754	0.310	0.391	1.3e-16
UNIPROTKB|E2R8H4	388	CTNS "Uncharacterized protein"	0.834	0.324	0.354	2.1e-16
UNIPROTKB|A7MB63	367	CTNS "Cystinosin" [Bos taurus	0.761	0.313	0.370	2.9e-16
MGI|MGI:1932872	367	Ctns "cystinosis, nephropathic	0.774	0.318	0.389	3.7e-16

TAIR|locus:2168843 AT5G40670 "AT5G40670" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 88/146 (60%), Positives = 104/146 (71%)

Query:     1 MAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFS 60
             + IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKST G+S
Sbjct:   125 IGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKSTVGWS 184

Query:    61 IGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYP 120
             IGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKT             + QHYVLYP
Sbjct:   185 IGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHYVLYP 244

Query:   121 AKKAVISSKLSKDGGVEPLLKSS-DH 145
              KK   S +  ++   EPL+ SS +H
Sbjct:   245 EKKVSKSPETGEESN-EPLIDSSHEH 269

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

DICTYBASE|DDB_G0279445 ctns "cystinosin" [Dictyostelium discoideum (taxid:44689)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 45/125 (36%), Positives = 72/125 (57%)

Query:     1 MAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGF 59
             + I +++W++  V   +   N  +WLW+IN+++ +++ +T IKYIPQA +NF+ KST G+
Sbjct:   118 IGIATLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNKSTSGW 177

Query:    60 SIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLY 119
             S+ N+LLDF GG  +  QM +   D  +W  F G+  K              I QHY+LY
Sbjct:   178 SVHNVLLDFSGGVLSLLQMFLDVADSGNWNIFTGDPVKLGLSLFSIAFDILFIIQHYILY 237

Query:   120 PAKKA 124
                K+
Sbjct:   238 RNPKS 242

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

ZFIN|ZDB-GENE-050522-352 ctns "cystinosis, nephropathic" [Danio rerio (taxid:7955)]

 Score = 233 (87.1 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 48/120 (40%), Positives = 73/120 (60%)

Query:     1 MAIVSVVWLAAAVCFFVALPNH-SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGF 59
             + ++++ W  A V  FVA+    SWL  + +F+ I++ +TL+KYIPQA MN+RRKST+G+
Sbjct:   243 IGLLAIGWTFAFVSLFVAVAKKISWLDYLYYFSYIKLGVTLVKYIPQAHMNYRRKSTEGW 302

Query:    60 SIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLY 119
             SIGN+LLDF GG  +  QM +++ + + W   +G+  K              I QHY LY
Sbjct:   303 SIGNVLLDFTGGSFSLIQMFLEAYNNDKWRFIFGDPTKFGLGIFSIFFDILFIIQHYCLY 362

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BXK0 CTNS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 226 (84.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 46/120 (38%), Positives = 69/120 (57%)

Query:     1 MAIVSVVWLAAAVCFFVALPNH-SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGF 59
             + ++++ W+      F+A     +WL  +  F+ I++ +TLIKY PQA MNFRRKST G+
Sbjct:   249 VGLLALAWIFTFTTLFLAAAEEMTWLQFLFCFSYIKLAVTLIKYFPQAYMNFRRKSTVGW 308

Query:    60 SIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLY 119
             SIGN+LLDF+GG  +  QM +QS + + W   +G+  K              + QHY LY
Sbjct:   309 SIGNVLLDFIGGSFSLLQMFLQSYNNDEWKLIFGDPTKFGLGVFSIIFDIVFMVQHYCLY 368

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0048058 "compound eye corneal lens development" evidence=IEA

FB|FBgn0039045 CG17119 [Drosophila melanogaster (taxid:7227)]

 Score = 221 (82.9 bits), Expect = 8.2e-18, P = 8.2e-18
 Identities = 48/126 (38%), Positives = 72/126 (57%)

Query:    24 WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSI 83
             WL  + + + +++ +T+IKY+PQA+MN+RRKST G+SIGNILLDF GG  +  QMI+ + 
Sbjct:   267 WLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTSGWSIGNILLDFTGGTLSMLQMILNAH 326

Query:    84 DQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKAVISSKLSKDGGVEPLLKSS 143
             + + WV+ +G+  K              + QHYV Y   +   SS L+    V+     S
Sbjct:   327 NYDDWVSIFGDPTKFGLGLFSVLFDVFFMLQHYVFYRHSRESSSSDLTTVTDVQNRTNES 386

Query:   144 DHPESE 149
               P SE
Sbjct:   387 P-PPSE 391

GO:0015811 "L-cystine transport" evidence=NAS

GO:0005765 "lysosomal membrane" evidence=NAS

GO:0015184 "L-cystine transmembrane transporter activity" evidence=NAS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

UNIPROTKB|F1RLI8 CTNS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 211 (79.3 bits), Expect = 8.3e-17, P = 8.3e-17
 Identities = 47/127 (37%), Positives = 68/127 (53%)

Query:     8 WLAAAVCFFVA-LPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILL 66
             WL       VA + + +WL  +  F+ I++ +TLIKY PQA MNF  KST+G+SIGN+LL
Sbjct:   245 WLFTLTALIVAAVGSITWLQFLFCFSYIKLAVTLIKYFPQAYMNFHYKSTEGWSIGNVLL 304

Query:    67 DFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLY---PAKK 123
             DF GG  +  QM +QS + + W   +G+  K                QH+ LY   P  +
Sbjct:   305 DFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDIVFFIQHFCLYRKKPGLQ 364

Query:   124 AVISSKL 130
             A I  ++
Sbjct:   365 AAIPGRI 371

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

UNIPROTKB|O60931 CTNS "Cystinosin" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 45/115 (39%), Positives = 63/115 (54%)

Query:     6 VVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNI 64
             + WL A V   VA     +WL  +  F+ I++ +TL+KY PQA MNF  KST+G+SIGN+
Sbjct:   243 LAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKSTEGWSIGNV 302

Query:    65 LLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLY 119
             LLDF GG  +  QM +QS + + W   +G+  K                QH+ LY
Sbjct:   303 LLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFFIQHFCLY 357

GO:0016021 "integral to membrane" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=NAS

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IMP;NAS

GO:0015811 "L-cystine transport" evidence=IDA;IMP;NAS

GO:0007420 "brain development" evidence=IMP

GO:0050890 "cognition" evidence=IMP

GO:0005765 "lysosomal membrane" evidence=IDA;NAS

GO:0005764 "lysosome" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0006749 "glutathione metabolic process" evidence=IMP

GO:0046034 "ATP metabolic process" evidence=IMP

GO:0005769 "early endosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|E2R8H4 CTNS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 208 (78.3 bits), Expect = 2.1e-16, P = 2.1e-16
 Identities = 45/127 (35%), Positives = 67/127 (52%)

Query:     8 WLAAAVCFFVALPNH-SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILL 66
             W+   V   +A     +WL  +  F+ I++ +TLIKY PQA MNF  KST+G+SIGN+LL
Sbjct:   245 WVFVLVTMILAAVRVITWLQFLFCFSYIKLAVTLIKYFPQAYMNFHYKSTEGWSIGNVLL 304

Query:    67 DFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKAVI 126
             DF GG  +  QM +QS + + W   +G+  K                QH+ LY  K  + 
Sbjct:   305 DFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIFFDIVFFIQHFCLYRKKPGLQ 364

Query:   127 SSKLSKD 133
             +++   D
Sbjct:   365 AAQTGSD 371

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

UNIPROTKB|A7MB63 CTNS "Cystinosin" [Bos taurus (taxid:9913)]

 Score = 206 (77.6 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 43/116 (37%), Positives = 62/116 (53%)

Query:     8 WLAAAVCFFVALPNHS-WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILL 66
             WL   +   +A    + WL  +  F+ I++ +TL+KY PQA MNF  KST+G+SIGN+LL
Sbjct:   245 WLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKSTEGWSIGNVLL 304

Query:    67 DFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAK 122
             DF GG  +  QM +QS + + W   +G+  K                QH+ LY  K
Sbjct:   305 DFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDVVFFIQHFCLYRKK 360

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1932872 Ctns "cystinosis, nephropathic" [Mus musculus (taxid:10090)]

 Score = 205 (77.2 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 46/118 (38%), Positives = 62/118 (52%)

Query:     6 VVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNI 64
             + WL   V   VA     +WL  +  F+ I++I+TLIKY PQA MNF  KST G+SIG +
Sbjct:   243 LAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGGV 302

Query:    65 LLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAK 122
             LLDF GG  +  QM +QS + + W   +G+  K                QH+ LY  K
Sbjct:   303 LLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFTIFFDVVFFIQHFYLYRKK 360

GO:0003333 "amino acid transmembrane transport" evidence=IMP;IDA

GO:0005764 "lysosome" evidence=ISO;IDA

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005770 "late endosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006749 "glutathione metabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0007616 "long-term memory" evidence=IMP

GO:0007625 "grooming behavior" evidence=IMP

GO:0007628 "adult walking behavior" evidence=IMP

GO:0008542 "visual learning" evidence=IMP

GO:0015184 "L-cystine transmembrane transporter activity" evidence=ISO;IMP;IDA

GO:0015811 "L-cystine transport" evidence=ISO;IMP;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=ISO

GO:0048058 "compound eye corneal lens development" evidence=IMP

GO:0050890 "cognition" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020590001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (274 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	151
TIGR00951	220	TIGR00951, 2A43, Lysosomal Cystine Transporter	1e-17
pfam04193	61	pfam04193, PQ-loop, PQ loop repeat	1e-11
smart00679	32	smart00679, CTNS, Repeated motif present between t	4e-08

>gnl|CDD|130026 TIGR00951, 2A43, Lysosomal Cystine Transporter

 Score = 75.7 bits (186), Expect = 1e-17
 Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 11/119 (9%)

Query: 2   AIVSVVWLAAAVCFFVALPNHS-WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFS 60
             + V  LA      VAL +    L  +   + I+V +TL+KY PQA  N+  KST   S
Sbjct: 112 LRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLS 171

Query: 61  IGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLY 119
           I  + LDF G      Q I QS      VN  G+  K  L +VS +F+ LF  Q +  +
Sbjct: 172 IITVFLDFTGLL----QRIFQS------VNETGDPLKAGLFVVSSLFNGLFAAQVFFYW 220

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 220

>gnl|CDD|202926 pfam04193, PQ-loop, PQ loop repeat

 Score = 56.0 bits (136), Expect = 1e-11
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query: 27 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQN 86
          L N    I +++ L+ YIPQ I N+RRKST+G SI  +LL  LG        I+      
Sbjct: 1  LSNVLGYISLVLWLVSYIPQIIKNYRRKSTEGLSILFLLLWLLGDILYLLYNILNGFPPL 60

Members of this family are all membrane bound proteins possessing a pair of repeats each spanning two transmembrane helices connected by a loop. The PQ motif found on loop 2 is critical for the localisation of cystinosin to lysosomes. However, the PQ motif appears not to be a general lysosome-targeting motif. It is thought likely to possess a more general function. Most probably this involves a glutamine residue. Length = 61

>gnl|CDD|128923 smart00679, CTNS, Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins

 Score = 46.3 bits (111), Expect = 4e-08
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 41 IKYIPQAIMNFRRKSTDGFSIGNILLDFLGG 71
          +  +PQ I N+RRKST+G SI  +LL  LG 
Sbjct: 1  VSLLPQIIKNYRRKSTEGLSILFVLLWLLGD 31

Function unknown, but likely to be associated with the glycosylation machinery. Length = 32

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
KOG3145	372	consensus Cystine transporter Cystinosin [Amino ac	99.87
TIGR00951	220	2A43 Lysosomal Cystine Transporter.	99.68
KOG3145	372	consensus Cystine transporter Cystinosin [Amino ac	99.65
TIGR00951	220	2A43 Lysosomal Cystine Transporter.	99.63
KOG2913	260	consensus Predicted membrane protein [Function unk	99.59
KOG2913	260	consensus Predicted membrane protein [Function unk	99.56
PF04193	61	PQ-loop: PQ loop repeat	99.55
smart00679	32	CTNS Repeated motif present between transmembrane	99.2
COG4095	89	Uncharacterized conserved protein [Function unknow	98.93
PF03083	87	MtN3_slv: Sugar efflux transporter for intercellul	98.55
KOG3211	230	consensus Predicted endoplasmic reticulum membrane	98.2
KOG1623	243	consensus Multitransmembrane protein [General func	97.29
KOG3211	230	consensus Predicted endoplasmic reticulum membrane	97.22
PHA02246	192	hypothetical protein	96.32
KOG2489	592	consensus Transmembrane protein [General function	95.15
KOG1623	243	consensus Multitransmembrane protein [General func	95.03
PF00810	147	ER_lumen_recept: ER lumen protein retaining recept	93.9
PF08611	97	DUF1774: Fungal protein of unknown function (DUF17	89.42
KOG3106	212	consensus ER lumen protein retaining receptor [Int	80.4

>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]

Probab=99.87  E-value=1.5e-22  Score=166.06  Aligned_cols=125  Identities=54%  Similarity=0.891  Sum_probs=115.9

Q ss_pred             hhhHHHHHHHHHHHHhhcccc-chHHHHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhh
Q 031861            2 AIVSVVWLAAAVCFFVALPNH-SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIV   80 (151)
Q Consensus         2 ~~~~~v~~~~~~~~~~~~~~~-~w~~~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~   80 (151)
                      |++.++|+.+++..++++..+ .|.+..+.+.+++...+.++|+||.++||+||||+|+|+..++++++|+++.+++.++
T Consensus       237 gil~i~~~f~~~~~~va~~~~~~wL~f~~~~syiKl~mTliKYiPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMil  316 (372)
T KOG3145|consen  237 GILAIFWLFAVVFMYVAYWYVIRWLAFLNNLSYIKLAMTLIKYIPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMIL  316 (372)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcceeccccccccccEEEEecccHHHHHHHHH
Confidence            567788888888888877665 5899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCccccccchhHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 031861           81 QSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVI  126 (151)
Q Consensus        81 ~~~~~~~~~~i~~n~~~l~~s~~~v~~d~iil~Q~~~~Y~~~~~~~  126 (151)
                      +..+.++|..+.+|+.+..++++++++|.+++.|||++|++++.-+
T Consensus       317 Q~~N~~sw~~f~gnp~KfGLg~vSi~FdiiFm~QhyVly~~~~~~~  362 (372)
T KOG3145|consen  317 QSSNDNSWDTFYGNPGKFGLGLVSIFFDIIFMMQHYVLYPRGHVLK  362 (372)
T ss_pred             HHhccccHHHHhcCchhhhhhhHHHHHHHHHHhhheeEeccccccC
Confidence            9999999999999999999999999999999999998888887654

>TIGR00951 2A43 Lysosomal Cystine Transporter

Probab=99.68  E-value=6.3e-16  Score=123.37  Aligned_cols=89  Identities=37%  Similarity=0.512  Sum_probs=77.5

Q ss_pred             ccchHHHHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccCCccccccchhHHHH
Q 031861           21 NHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLL  100 (151)
Q Consensus        21 ~~~w~~~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n~~~l~~  100 (151)
                      ...|.+..+.++.++.....+|++||+++|||||||+|+|+...+++++|.+-.    +++....      .+|+.++..
T Consensus       132 ~~~~l~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqr----i~ts~~~------~gd~~~l~~  201 (220)
T TIGR00951       132 PITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLDFTGLLQR----IFQSVNE------TGDPLKAGL  201 (220)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCHHHHHHHHHHHHHH----HHHHHHH------cCCHHHHHH
Confidence            457899999999999999999999999999999999999999999999995554    4433321      267899999


Q ss_pred             HHHHHHHHHHHHHHHHhhcC
Q 031861          101 SLVSVVFDLLFICQHYVLYP  120 (151)
Q Consensus       101 s~~~v~~d~iil~Q~~~~Y~  120 (151)
                      +..++++|.+++.||| +|+
T Consensus       202 ~~~s~~~n~i~~~Q~~-~y~  220 (220)
T TIGR00951       202 FVVSSLFNGLFAAQVF-FYW  220 (220)
T ss_pred             HHHHHHHHHHHHHHHh-hcC
Confidence            9999999999999997 774

>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]

Probab=99.65  E-value=1.9e-17  Score=136.15  Aligned_cols=98  Identities=21%  Similarity=0.267  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhh---hccCCc--c----ccccchhH
Q 031861           27 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQS---IDQNSW--V----NFYGNIGK   97 (151)
Q Consensus        27 ~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~---~~~~~~--~----~i~~n~~~   97 (151)
                      ..+++||++.+.|++|++||++.||||||+.|+|.+|+++|++|...|.+..+..-   ..+++.  .    ..+.+..+
T Consensus       123 l~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~p~g~~pv~~nD  202 (372)
T KOG3145|consen  123 LDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQNQYDTSYPLGVPPVTLND  202 (372)
T ss_pred             HHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhccceeccCCCCCCccchhh
Confidence            68899999999999999999999999999999999999999999999998765422   223332  1    12333557


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 031861           98 TLLSLVSVVFDLLFICQHYVLYPAKKAV  125 (151)
Q Consensus        98 l~~s~~~v~~d~iil~Q~~~~Y~~~~~~  125 (151)
                      ++.++|+++++++.+.|++ .|+|..++
T Consensus       203 v~fslHa~lmt~Iti~Qc~-~yeR~~q~  229 (372)
T KOG3145|consen  203 VVFSLHAVLMTVITILQCF-FYERGWQR  229 (372)
T ss_pred             hhhhHHHHHHHHHHHHHHH-hhhhcccc
Confidence            9999999999999999995 88877543

>TIGR00951 2A43 Lysosomal Cystine Transporter

Probab=99.63  E-value=1.9e-15  Score=120.62  Aligned_cols=96  Identities=21%  Similarity=0.207  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhh---hccCCcccc--ccchhHHHHH
Q 031861           27 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQS---IDQNSWVNF--YGNIGKTLLS  101 (151)
Q Consensus        27 ~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~---~~~~~~~~i--~~n~~~l~~s  101 (151)
                      ++.++||++.++|+++++||++|||||||++|+|++|+.++++|..++.++.+..-   ..+++.+.-  .....+++.+
T Consensus         3 iS~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~a   82 (220)
T TIGR00951         3 LSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFFT   82 (220)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHHH
Confidence            46789999999999999999999999999999999999999999999998765431   122222211  1223589999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCc
Q 031861          102 LVSVVFDLLFICQHYVLYPAKK  123 (151)
Q Consensus       102 ~~~v~~d~iil~Q~~~~Y~~~~  123 (151)
                      +++++++++++.|+. +|+++.
T Consensus        83 i~~~il~~l~~~q~~-~~~~~~  103 (220)
T TIGR00951        83 LHAILICFIVLHQCG-DYERGW  103 (220)
T ss_pred             HHHHHHHHHHHHHHh-hccccc
Confidence            999999999999985 776553

>KOG2913 consensus Predicted membrane protein [Function unknown]

Probab=99.59  E-value=6.4e-15  Score=120.17  Aligned_cols=92  Identities=22%  Similarity=0.246  Sum_probs=80.6

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccCCccccccchhHHHHH
Q 031861           22 HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLS  101 (151)
Q Consensus        22 ~~w~~~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n~~~l~~s  101 (151)
                      ..|.....++|.++.+||.+..+||+++|||+||++|+|+.|+..|+.|+++.+++..+...          ++...+.+
T Consensus         3 ~~~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~----------~~~~~~~~   72 (260)
T KOG2913|consen    3 MINDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPL----------GSTLKVQA   72 (260)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhccc----------chhHHHHH
Confidence            45778899999999999999999999999999999999999999999999999988777443          34566778


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCcc
Q 031861          102 LVSVVFDLLFICQHYVLYPAKKA  124 (151)
Q Consensus       102 ~~~v~~d~iil~Q~~~~Y~~~~~  124 (151)
                      ...++.|.+++.|++ ||++..+
T Consensus        73 ~yy~~~d~~l~~q~~-yy~~~~~   94 (260)
T KOG2913|consen   73 VYYTLADSVLFVQCL-YYGNIYP   94 (260)
T ss_pred             HHHHHHHHHHHHHHH-hcchhcc
Confidence            889999999999984 7877655

>KOG2913 consensus Predicted membrane protein [Function unknown]

Probab=99.56  E-value=2.3e-15  Score=122.80  Aligned_cols=89  Identities=27%  Similarity=0.312  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccCCccccccchhHHHHHHHHH
Q 031861           26 WLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSV  105 (151)
Q Consensus        26 ~~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n~~~l~~s~~~v  105 (151)
                      ..+.++||++..++..+|+|||++|+|||||+|+|+.++.++..||.+|..|           +.+..|.||+..+..+.
T Consensus       164 ~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s-----------~~~~~n~~w~~~~~~~~  232 (260)
T KOG2913|consen  164 SLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILS-----------SYLVTNLPWLVDSKGTI  232 (260)
T ss_pred             chHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccccccccc-----------cccccCCcccccCCcch
Confidence            3788999999999999999999999999999999999999999999999776           23467899999999999


Q ss_pred             HHHHHHHHHHHhhcCCCcccc
Q 031861          106 VFDLLFICQHYVLYPAKKAVI  126 (151)
Q Consensus       106 ~~d~iil~Q~~~~Y~~~~~~~  126 (151)
                      .+|+.++.|++ +||+++++.
T Consensus       233 ~~D~~~~~q~~-~~~~~~~~~  252 (260)
T KOG2913|consen  233 YLDIFIFLQFF-NYRASKAQD  252 (260)
T ss_pred             hHHHHHHHHHH-Hhhcccccc
Confidence            99999999986 788777443

>PF04193 PQ-loop: PQ loop repeat

Probab=99.55  E-value=9.7e-15  Score=93.98  Aligned_cols=56  Identities=30%  Similarity=0.497  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhh
Q 031861           28 INFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSI   83 (151)
Q Consensus        28 ~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~   83 (151)
                      ++++|+++.++++++++||+++|||+||++|+|+.++.++++|+++++++.+....
T Consensus         2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~   57 (61)
T PF04193_consen    2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNY   57 (61)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            57899999999999999999999999999999999999999999999887776543

>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins

Probab=99.20  E-value=1e-11  Score=70.30  Aligned_cols=32  Identities=50%  Similarity=0.748  Sum_probs=29.9

Q ss_pred             hhhhhHHHHHhhhCcccccchHHHHHHhhhhh
Q 031861           41 IKYIPQAIMNFRRKSTDGFSIGNILLDFLGGC   72 (151)
Q Consensus        41 ~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i   72 (151)
                      ++++||+++|||+||++|+|+.|+++++.|++
T Consensus         1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~   32 (32)
T smart00679        1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI   32 (32)
T ss_pred             CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence            47899999999999999999999999999974

Function unknown, but likely to be associated with the glycosylation machinery.

>COG4095 Uncharacterized conserved protein [Function unknown]

Probab=98.93  E-value=5.5e-09  Score=72.02  Aligned_cols=84  Identities=20%  Similarity=0.277  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccCCccccccchhHHHHHHHHHH
Q 031861           27 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVV  106 (151)
Q Consensus        27 ~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n~~~l~~s~~~v~  106 (151)
                      ..+++|++++.+..++++||.+|-+|.|+|+++|+.|+.+-..|-.+|++    ++....+.+.+..|       .++..
T Consensus         4 ~~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwli----ygILi~~lPii~aN-------~i~~i   72 (89)
T COG4095           4 FIEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLI----YGILINDLPIIIAN-------IISFI   72 (89)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHH----HHHHHccCcchhHH-------HHHHH
Confidence            45789999999999999999999999999999999999999999999965    44433333444444       66777


Q ss_pred             HHHHHHHHHHhhcCCC
Q 031861          107 FDLLFICQHYVLYPAK  122 (151)
Q Consensus       107 ~d~iil~Q~~~~Y~~~  122 (151)
                      +.++++.-. +.|+.|
T Consensus        73 l~liIl~~k-I~~~~k   87 (89)
T COG4095          73 LSLIILFYK-IKYILK   87 (89)
T ss_pred             HHHHHHHHH-HHHHHh
Confidence            777777765 356544

>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []

Probab=98.55  E-value=2.4e-07  Score=63.34  Aligned_cols=82  Identities=23%  Similarity=0.447  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccCCccccccchhHHHHHHHHHHHHH
Q 031861           30 FFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDL  109 (151)
Q Consensus        30 ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n~~~l~~s~~~v~~d~  109 (151)
                      ++|.+..++-..+-+||+.+.+|+||++++|+..+...++++.+|    +.++...+|+..+..|.       ..+++..
T Consensus         5 ~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W----~~YG~l~~d~~i~~~N~-------~g~~~~~   73 (87)
T PF03083_consen    5 ILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLW----LIYGILINDWPIIVPNV-------FGLVLSI   73 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHh----hhhhhhcCCeeEEeeHH-------HHHHHHH
Confidence            345566666677779999999999999999999999999999999    45666666777777774       3455555


Q ss_pred             HHHHHHHhhcCCCc
Q 031861          110 LFICQHYVLYPAKK  123 (151)
Q Consensus       110 iil~Q~~~~Y~~~~  123 (151)
                      +.+.-++ .|.+++
T Consensus        74 ~~~~~~~-~y~~~~   86 (87)
T PF03083_consen   74 IYLVVYY-IYPSKK   86 (87)
T ss_pred             HHHhheE-EeCCCC
Confidence            5555554 566654

Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane

>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]

Probab=98.20  E-value=5.9e-06  Score=65.50  Aligned_cols=88  Identities=17%  Similarity=0.207  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccCCccccccchhHHHHHHHHHH
Q 031861           27 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVV  106 (151)
Q Consensus        27 ~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n~~~l~~s~~~v~  106 (151)
                      +....-.....+..++|+||+..|||.|+|..+|....++++.|...+.+..+-.   ..|       +..+....+..+
T Consensus       141 ~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~---t~d-------~~mll~~v~s~~  210 (230)
T KOG3211|consen  141 IITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQE---TGD-------FLMLLRFVISLA  210 (230)
T ss_pred             HHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHh---cCC-------hhhHHHHHHHHH
Confidence            3344444455567789999999999999999999999999999999986543221   112       233555677889


Q ss_pred             HHHHHHHHHHhhcCCCccc
Q 031861          107 FDLLFICQHYVLYPAKKAV  125 (151)
Q Consensus       107 ~d~iil~Q~~~~Y~~~~~~  125 (151)
                      +|..+..|.. .||+.+++
T Consensus       211 ~Ng~i~aq~l-~Y~s~~~~  228 (230)
T KOG3211|consen  211 LNGLITAQVL-RYWSTAIK  228 (230)
T ss_pred             HhHHHHHHHH-HHHhcCCC
Confidence            9999999985 89888764

>KOG1623 consensus Multitransmembrane protein [General function prediction only]

Probab=97.29  E-value=0.00071  Score=55.00  Aligned_cols=87  Identities=18%  Similarity=0.269  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccC-CccccccchhHHHHHHHH
Q 031861           26 WLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQN-SWVNFYGNIGKTLLSLVS  104 (151)
Q Consensus        26 ~~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~-~~~~i~~n~~~l~~s~~~  104 (151)
                      .+..+.|.+....-..+-+|-.++-+||||+||.|...+++.+++..+|+    .++.... |...+..|.       +.
T Consensus         7 ~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl----~YG~~~~~d~llitIN~-------~G   75 (243)
T KOG1623|consen    7 FLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWL----YYGLLKVHDYLLITING-------IG   75 (243)
T ss_pred             HHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHH----HhhhhccCceEEEEEeh-------hc
Confidence            34444555555555677789999999999999999999999999999994    4553332 666666673       33


Q ss_pred             HHHHHHHHHHHHhhcCCCcc
Q 031861          105 VVFDLLFICQHYVLYPAKKA  124 (151)
Q Consensus       105 v~~d~iil~Q~~~~Y~~~~~  124 (151)
                      +++..+-+.=+ ++|.++|.
T Consensus        76 ~~ie~~Yi~~f-~~ya~~k~   94 (243)
T KOG1623|consen   76 LVIETVYISIF-LYYAPKKK   94 (243)
T ss_pred             HHHHHHHHHHH-heecCchh
Confidence            44444444444 37776664

>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]

Probab=97.22  E-value=0.0024  Score=50.84  Aligned_cols=83  Identities=17%  Similarity=0.179  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccCCccccccchhHHHHHHHHHH
Q 031861           27 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVV  106 (151)
Q Consensus        27 ~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n~~~l~~s~~~v~  106 (151)
                      +...+||.-...+..-.+|||.|--..||++|+|..-+++.++|..-.+.+..-+++.-   +       ...-+.+-++
T Consensus        30 lsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~pF---s-------s~gE~~fLl~   99 (230)
T KOG3211|consen   30 LSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYPF---S-------SYGEYPFLLL   99 (230)
T ss_pred             HHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCCc---h-------hHHHHHHHHH
Confidence            68889999999999999999999999999999999999999999888765444433211   1       1111223445


Q ss_pred             HHHHHHHHHHhhcC
Q 031861          107 FDLLFICQHYVLYP  120 (151)
Q Consensus       107 ~d~iil~Q~~~~Y~  120 (151)
                      -+.+++.+.+ .|+
T Consensus       100 Q~vili~~if-~f~  112 (230)
T KOG3211|consen  100 QAVILILCIF-HFS  112 (230)
T ss_pred             HHHHHHHHHH-Hhc
Confidence            5667777775 776

>PHA02246 hypothetical protein

Probab=96.32  E-value=0.022  Score=43.65  Aligned_cols=47  Identities=21%  Similarity=0.301  Sum_probs=37.9

Q ss_pred             HHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhh
Q 031861           34 IQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIV   80 (151)
Q Consensus        34 i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~   80 (151)
                      ++...-..+++|||+.=||.|+.||.|+.+.++--+|-.+-..+..+
T Consensus       115 Vat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~L  161 (192)
T PHA02246        115 VATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVL  161 (192)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhh
Confidence            44455567899999999999999999999999988887766555444

>KOG2489 consensus Transmembrane protein [General function prediction only]

Probab=95.15  E-value=0.23  Score=44.44  Aligned_cols=55  Identities=18%  Similarity=0.269  Sum_probs=34.8

Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHHHHHh---hhhhHHHHHhhhCcccccchHHHHH
Q 031861           10 AAAVCFFVALPNHSWLWLINFFNAIQVIMTLI---KYIPQAIMNFRRKSTDGFSIGNILL   66 (151)
Q Consensus        10 ~~~~~~~~~~~~~~w~~~~~ilG~i~~~~~~~---s~iPQI~~N~krKSt~GlS~~f~~l   66 (151)
                      ++++-..+--.+-+|  .+.++-..+...+++   -..||...|||-||+.-|.-.++.-
T Consensus       450 g~aVYSLlY~~hKsW--YSWvLn~l~~~vy~FGFi~M~PQLFINYKLKSVAHLPWR~~tY  507 (592)
T KOG2489|consen  450 GGAVYSLLYVEHKSW--YSWVLNSLYNGVYAFGFIFMLPQLFINYKLKSVAHLPWRAFTY  507 (592)
T ss_pred             HHHHHhhhhcccccH--HHHHHHHHHhHHHHHHHHHhChHHHhhhhhhhhhcCcHHHHHH
Confidence            333333333334454  333444444444444   4589999999999999999887764

>KOG1623 consensus Multitransmembrane protein [General function prediction only]

Probab=95.03  E-value=0.15  Score=41.61  Aligned_cols=73  Identities=11%  Similarity=0.137  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHhhh---hhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccCCccccccchhHHHHHHHH
Q 031861           28 INFFNAIQVIMTLIKY---IPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVS  104 (151)
Q Consensus        28 ~~ilG~i~~~~~~~s~---iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n~~~l~~s~~~  104 (151)
                      ...+|+++.+.....+   +--+.+--|+||+|.++...-+..++-...|    ++++...+|.-....|..-.++++.+
T Consensus       125 ~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W----~lYGlli~D~~IaipN~iG~~l~~~Q  200 (243)
T KOG1623|consen  125 VSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQW----LLYGLLIKDFFIAIPNVLGFLLGLIQ  200 (243)
T ss_pred             eeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHH----HHHHHHhcCeEEEcccHHHHHHHHHH
Confidence            4567888887776655   5556678888999999998866555555544    44554444443334564334444333

>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway

Probab=93.90  E-value=0.52  Score=35.53  Aligned_cols=64  Identities=8%  Similarity=0.128  Sum_probs=48.0

Q ss_pred             HHHHHHhhccccchHHHHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhh
Q 031861           11 AAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYS   76 (151)
Q Consensus        11 ~~~~~~~~~~~~~w~~~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i   76 (151)
                      .+++.+... .++| +..+++=..+..+.+++.+||.++-.|++.+|.+...++..-.+.-.++.+
T Consensus        78 ~vLa~i~~p-~~~~-~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~  141 (147)
T PF00810_consen   78 FVLALIFHP-LNSF-FFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLL  141 (147)
T ss_pred             HHHHHHHhc-cccc-hHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHH
Confidence            334444443 2222 466777778999999999999999999999999999998877666666543

The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane

>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function

Probab=89.42  E-value=3  Score=29.41  Aligned_cols=32  Identities=16%  Similarity=0.134  Sum_probs=20.6

Q ss_pred             HHHHHhhhhhHHHHHhhhCcccccchHHHHHH
Q 031861           36 VIMTLIKYIPQAIMNFRRKSTDGFSIGNILLD   67 (151)
Q Consensus        36 ~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~   67 (151)
                      .++|.+..+|+...--.+--+-|+|...+...
T Consensus         6 VfIW~~l~~g~~~i~~~~D~~~GfslS~L~~s   37 (97)
T PF08611_consen    6 VFIWVILVYGGFFILAFKDYAMGFSLSYLTAS   37 (97)
T ss_pred             hHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHH
Confidence            45677777777766665556667766665554

>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.40  E-value=4.4  Score=32.21  Aligned_cols=54  Identities=9%  Similarity=0.133  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhh
Q 031861           27 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIV   80 (151)
Q Consensus        27 ~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~   80 (151)
                      +.+++=-.+..+.+++-+||..+--|.|.+|-+--+.++.--+--.+|....+.
T Consensus       115 ~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~WI~  168 (212)
T KOG3106|consen  115 ILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGLYRALYIANWIY  168 (212)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            567777789999999999999999999999999988887765555555544444

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00