Citrus Sinensis ID: 031883

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MWLGNVKVLSMETLVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEEPQTDQLEIPSEVQLQDEKSLAPKTRKKPKDNKMKFGC
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHcccEEEEEEccccccccEEEEccccccccccccccccccHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHccccccccEEccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHcccEEEEEEcccccccEEEEEccccccccccccccHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mwlgnvkvLSMETLVRYYSSSRKAAVnvrkinpkvptqQAYSIAQSLYGIIkqhgpltvsntwihakdagisglngkTHMKIMLKWMRGRKMLKLFCngvgsnkkflhstlpeepqtdqleipsevqlqdekslapktrkkpkdnkmkfgc
Flexible Loop (DISEMBL)
mwlgnvkvlsMETLVRYYSssrkaavnvrkinpkvptQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDagisglngktHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEepqtdqleipsevqlqdekslapktrkkpkdnkmkfgc
Low Complexity Region (SEG)
MWLGNVKVLSMETLVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEEPQTDQLEIPSEVQLQDEKSLAPKTRKKPKDNKMKFGC
Disordered region (IsUnstruct)
*WLGNVKVLSMETLVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFL********************************************
Disordered Region (DISOPRED)
***GNVKVLSMETLVRYY*****************PTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAG****NGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHST**************************************FGC
Disordered Region (DISEMBL)
MWLGNVKVLSMETLVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEEPQTDQLEIP****************************
Disordered Region (DISPRO)
*WLGNVKVLSMETLVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEEPQ***********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWLGNVKVLSMETLVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEEPQTDQLEIPSEVQLQDEKSLAPKTRKKPKDNKMKFGC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
255555853	142	conserved hypothetical protein [Ricinus	0.781	0.830	0.691	1e-41
225426494	141	PREDICTED: uncharacterized protein LOC10	0.695	0.744	0.775	2e-41
224061533	144	predicted protein [Populus trichocarpa]	0.761	0.798	0.647	5e-37
18410491	151	uncharacterized protein [Arabidopsis tha	0.774	0.774	0.630	1e-36
297842141	148	hypothetical protein ARALYDRAFT_476532 [	0.728	0.743	0.651	5e-36
449456295	154	PREDICTED: uncharacterized protein LOC10	0.894	0.876	0.532	3e-34
125546480	140	hypothetical protein OsI_14364 [Oryza sa	0.768	0.828	0.55	4e-29
27573361	158	unknown protein [Oryza sativa Japonica G	0.768	0.734	0.55	4e-29
297601996	174	Os03g0852500 [Oryza sativa Japonica Grou	0.768	0.666	0.55	6e-29
242032213	160	hypothetical protein SORBIDRAFT_01g00088	0.662	0.625	0.598	3e-27

>gi|255555853|ref|XP_002518962.1| conserved hypothetical protein [Ricinus communis] gi|223541949|gb|EEF43495.1| conserved hypothetical protein [Ricinus communis]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/120 (69%), Positives = 101/120 (84%), Gaps = 2/120 (1%)

Query: 13  TLVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGIS 72
           +++RY+S  R+ AVNVRKINPKVP  +A  I+QSLY IIK+ GPL+++NTW +AK+A IS
Sbjct: 17  SMLRYFS--RQRAVNVRKINPKVPFPEAALISQSLYNIIKERGPLSIANTWNYAKEANIS 74

Query: 73  GLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEEPQTDQLEIPSEVQLQDEK 132
           GLN KTHMKIMLKWMRGRKMLK FCN VGS+KKFLHSTLPEEP++DQ ++ SE  LQ EK
Sbjct: 75  GLNSKTHMKIMLKWMRGRKMLKFFCNHVGSSKKFLHSTLPEEPRSDQSKVLSEPNLQTEK 134

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426494|ref|XP_002277461.1| PREDICTED: uncharacterized protein LOC100253102 [Vitis vinifera] gi|297742484|emb|CBI34633.3| unnamed protein product [Vitis vinifera]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/107 (77%), Positives = 93/107 (86%), Gaps = 2/107 (1%)

Query: 14  LVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISG 73
            VRY+S  RK AVNVRKINPKVP Q+A SIAQSLY +IKQ+G L++SNTWI AK+AGISG
Sbjct: 18  FVRYFS--RKCAVNVRKINPKVPYQEASSIAQSLYQVIKQNGALSISNTWIQAKEAGISG 75

Query: 74  LNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEEPQTDQL 120
           LN KTHMKIMLKWMRGRKMLKLFCN VGS+KKFLH TLPE+P+  QL
Sbjct: 76  LNSKTHMKIMLKWMRGRKMLKLFCNHVGSSKKFLHCTLPEDPEVAQL 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061533|ref|XP_002300527.1| predicted protein [Populus trichocarpa] gi|222847785|gb|EEE85332.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 77/119 (64%), Positives = 96/119 (80%), Gaps = 4/119 (3%)

Query: 14  LVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISG 73
           +VR++S +R  AV+V++INPKVP  +A SIAQSLY +IK+HGPLTVSNTW   K+A ISG
Sbjct: 22  IVRHFSRAR--AVDVKRINPKVPFSEAASIAQSLYQVIKEHGPLTVSNTWNQVKEANISG 79

Query: 74  LNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEEPQTDQLEIPSEVQLQDEK 132
           LN KTHMKIMLKWMRGRKMLKLFCN   ++KKFLH +LPEEP+T+Q     E+ LQ ++
Sbjct: 80  LNSKTHMKIMLKWMRGRKMLKLFCN--PNSKKFLHCSLPEEPRTEQSNSAPELNLQTKR 136

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410491|ref|NP_565076.1| uncharacterized protein [Arabidopsis thaliana] gi|12325135|gb|AAG52511.1|AC016662_5 unknown protein; 73656-74659 [Arabidopsis thaliana] gi|16323093|gb|AAL15281.1| At1g73940/F2P9_19 [Arabidopsis thaliana] gi|21360419|gb|AAM47325.1| At1g73940/F2P9_19 [Arabidopsis thaliana] gi|21592788|gb|AAM64737.1| unknown [Arabidopsis thaliana] gi|332197407|gb|AEE35528.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/119 (63%), Positives = 92/119 (77%), Gaps = 2/119 (1%)

Query: 14  LVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISG 73
           LVRY S  R  AVNVRKINPKVP Q+AY+I+ SLY + K HGPL+V NTW+ A++AG+SG
Sbjct: 30  LVRYMSRER--AVNVRKINPKVPIQEAYAISNSLYDLFKLHGPLSVPNTWLRAQEAGVSG 87

Query: 74  LNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEEPQTDQLEIPSEVQLQDEK 132
           LN KTHMK++LKWMRG+KMLKL CN VGS+KKF H+ LPE+P  +Q   P E + Q  K
Sbjct: 88  LNSKTHMKLLLKWMRGKKMLKLICNQVGSSKKFFHTVLPEDPLQEQPAAPIENKKQAVK 146

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842141|ref|XP_002888952.1| hypothetical protein ARALYDRAFT_476532 [Arabidopsis lyrata subsp. lyrata] gi|297334793|gb|EFH65211.1| hypothetical protein ARALYDRAFT_476532 [Arabidopsis lyrata subsp. lyrata]

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 88/112 (78%), Gaps = 2/112 (1%)

Query: 14  LVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISG 73
           LVRY S  R  AVNVRKINPKVP Q+AY+I+ SLY + K HGPL+V NTW+ A++AG+SG
Sbjct: 27  LVRYMSRER--AVNVRKINPKVPIQEAYAISNSLYDLFKLHGPLSVPNTWLRAQEAGVSG 84

Query: 74  LNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEEPQTDQLEIPSE 125
           LN KTHMK++LKWMRG+KMLKL CN VGS+KKF H+ LPE+P   Q   P E
Sbjct: 85  LNSKTHMKLLLKWMRGKKMLKLICNQVGSSKKFFHTVLPEDPLQVQPAAPVE 136

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456295|ref|XP_004145885.1| PREDICTED: uncharacterized protein LOC101211684 [Cucumis sativus] gi|449507219|ref|XP_004162966.1| PREDICTED: uncharacterized LOC101211684 [Cucumis sativus]

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/139 (53%), Positives = 102/139 (73%), Gaps = 4/139 (2%)

Query: 4   GNVKVLSMETLVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTW 63
           G    L   T  R++S  RK A N+RKINPK+  Q+A  +AQ LYG+++QHGPLT+SN W
Sbjct: 16  GGFAGLVFNTFARHFS--RKRAENLRKINPKLTPQEASLVAQDLYGVVQQHGPLTISNAW 73

Query: 64  IHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEEPQTDQLEIP 123
           I A+++G++GLN KTHMK++LKWMRGRKML LFC+ VGSNKKFL  T P++P+ ++L+  
Sbjct: 74  IKAQESGVNGLNSKTHMKLLLKWMRGRKMLNLFCHYVGSNKKFLLCT-PDDPRAEELKNS 132

Query: 124 SEVQLQDEK-SLAPKTRKK 141
           SE   Q +K + +P  R+K
Sbjct: 133 SEAGPQRKKRAKSPTKRRK 151

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125546480|gb|EAY92619.1| hypothetical protein OsI_14364 [Oryza sativa Indica Group] gi|125588672|gb|EAZ29336.1| hypothetical protein OsJ_13403 [Oryza sativa Japonica Group]

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 86/120 (71%), Gaps = 4/120 (3%)

Query: 9   LSMETLVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKD 68
           ++ E L R++S  RK AV+VR+INPKVP ++A +I+  L  I   HGPLTV NTW HAKD
Sbjct: 1   MAWEVLKRHFS--RKRAVDVRRINPKVPKEEAVAISGRLLQIFTDHGPLTVGNTWNHAKD 58

Query: 69  AGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEEPQTDQLEIPSEVQL 128
           AGISGLN KTHMKI+LKWM GR+++KL C G G++KKFL+S  P     D+ E  +  +L
Sbjct: 59  AGISGLNSKTHMKILLKWMTGRRIVKLNCVGTGNSKKFLYS--PYSADADKSEEAAAEEL 116

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27573361|gb|AAO20079.1| unknown protein [Oryza sativa Japonica Group] gi|108712147|gb|ABF99942.1| expressed protein [Oryza sativa Japonica Group] gi|215697183|dbj|BAG91177.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 86/120 (71%), Gaps = 4/120 (3%)

Query: 9   LSMETLVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKD 68
           ++ E L R++S  RK AV+VR+INPKVP ++A +I+  L  I   HGPLTV NTW HAKD
Sbjct: 19  MAWEVLKRHFS--RKRAVDVRRINPKVPKEEAVAISGRLLQIFTDHGPLTVGNTWNHAKD 76

Query: 69  AGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEEPQTDQLEIPSEVQL 128
           AGISGLN KTHMKI+LKWM GR+++KL C G G++KKFL+S  P     D+ E  +  +L
Sbjct: 77  AGISGLNSKTHMKILLKWMTGRRIVKLNCVGTGNSKKFLYS--PYSADADKSEEAAAEEL 134

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297601996|ref|NP_001051924.2| Os03g0852500 [Oryza sativa Japonica Group] gi|255675055|dbj|BAF13838.2| Os03g0852500, partial [Oryza sativa Japonica Group]

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 86/120 (71%), Gaps = 4/120 (3%)

Query: 9   LSMETLVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKD 68
           ++ E L R++S  RK AV+VR+INPKVP ++A +I+  L  I   HGPLTV NTW HAKD
Sbjct: 35  MAWEVLKRHFS--RKRAVDVRRINPKVPKEEAVAISGRLLQIFTDHGPLTVGNTWNHAKD 92

Query: 69  AGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEEPQTDQLEIPSEVQL 128
           AGISGLN KTHMKI+LKWM GR+++KL C G G++KKFL+S  P     D+ E  +  +L
Sbjct: 93  AGISGLNSKTHMKILLKWMTGRRIVKLNCVGTGNSKKFLYS--PYSADADKSEEAAAEEL 150

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242032213|ref|XP_002463501.1| hypothetical protein SORBIDRAFT_01g000880 [Sorghum bicolor] gi|241917355|gb|EER90499.1| hypothetical protein SORBIDRAFT_01g000880 [Sorghum bicolor]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 77/102 (75%), Gaps = 2/102 (1%)

Query: 12  ETLVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGI 71
           E L R++S  RK AVNV++INPKVP ++A +I++ L  I+  HGPLTV N W HAKDAGI
Sbjct: 21  EVLRRHFS--RKRAVNVKRINPKVPKEEAVAISERLVQILSDHGPLTVGNAWNHAKDAGI 78

Query: 72  SGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPE 113
           +GLN KTHMKI+LKWM GR ++KL C  VG+ KKFL+S   E
Sbjct: 79  AGLNSKTHMKILLKWMTGRNIVKLSCVHVGNAKKFLYSPFTE 120

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
TAIR|locus:2031481	151	AT1G73940 "AT1G73940" [Arabido	0.807	0.807	0.593	4.9e-37
TAIR|locus:2158034	145	AT5G49410 "AT5G49410" [Arabido	0.728	0.758	0.385	1.9e-19

TAIR|locus:2031481 AT1G73940 "AT1G73940" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 76/128 (59%), Positives = 97/128 (75%)

Query:    14 LVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISG 73
             LVRY S  R+ AVNVRKINPKVP Q+AY+I+ SLY + K HGPL+V NTW+ A++AG+SG
Sbjct:    30 LVRYMS--RERAVNVRKINPKVPIQEAYAISNSLYDLFKLHGPLSVPNTWLRAQEAGVSG 87

Query:    74 LNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEEPQTDQLEIPSEVQLQDEKS 133
             LN KTHMK++LKWMRG+KMLKL CN VGS+KKF H+ LPE+P  +Q   P    ++++K 
Sbjct:    88 LNSKTHMKLLLKWMRGKKMLKLICNQVGSSKKFFHTVLPEDPLQEQPAAP----IENKKQ 143

Query:   134 LAPKTRKK 141
                K R K
Sbjct:   144 AVKKKRSK 151

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006364 "rRNA processing" evidence=RCA

TAIR|locus:2158034 AT5G49410 "AT5G49410" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 44/114 (38%), Positives = 71/114 (62%)

Query:    14 LVRYYSSSRKAAVNVRKINPKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISG 73
             L R++++  K  +   ++N   P +Q  +I + ++ I+K HGPLT++ TW   K+ G+ G
Sbjct:    20 LTRHFATKPKPKMKPIELN--TPPEQTQTITRVIFDILKDHGPLTIAETWDRVKEVGLRG 77

Query:    74 LNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHST--LPEEPQTDQLEIPSE 125
             L  K HMKI+L+WMR R+ LKL CN VG +K+FL++T      P +   ++P E
Sbjct:    78 LTSKRHMKIILRWMRERQKLKLICNHVGPHKQFLYTTWFTKHNPSSKFPKLPPE 131


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      151       151   0.00097  104 3  11 22  0.36    32
                                                     30  0.40    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  144 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.00u 0.08s 15.08t   Elapsed:  00:00:03
  Total cpu time:  15.00u 0.08s 15.08t   Elapsed:  00:00:03
  Start:  Fri May 10 05:42:10 2013   End:  Fri May 10 05:42:13 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000464001 SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (141 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
PF05066	72	HARE-HTH: HB1, ASXL, restriction endonuclease HTH	95.78
PF06163	127	DUF977: Bacterial protein of unknown function (DUF	90.99
PF03981	141	Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone	83.93
PF03965	115	Penicillinase_R: Penicillinase repressor; InterPro	83.01
PF06224	327	HTH_42: Winged helix DNA-binding domain; InterPro:	82.41

>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2

Probab=95.78  E-value=0.013  Score=39.04  Aligned_cols=38  Identities=24%  Similarity=0.613  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHhC-CcchhhhhHHHHHhccCCCCchhH
Q 031883           42 SIAQSLYGIIKQHG-PLTVSNTWIHAKDAGISGLNGKTH   79 (151)
Q Consensus        42 tItr~l~dIlkeHG-PLTVsntW~hake~gi~gL~SK~H   79 (151)
                      |+..+.+.||+++| |+|+.+.|+.+++.|+-.-.+|+=
T Consensus         2 t~~eaa~~vL~~~~~pm~~~eI~~~i~~~~~~~~~~k~p   40 (72)
T PF05066_consen    2 TFKEAAYEVLEEAGRPMTFKEIWEEIQERGLYKKSGKTP   40 (72)
T ss_dssp             -HHHHHHHHHHHH-S-EEHHHHHHHHHHHHTS---GGGG
T ss_pred             CHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCcccCCH
Confidence            56788999999998 999999999999998876656653

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The delta protein is a dispensable subunit of Bacillus subtilis RNA polymerase (RNAP) that has major effects on the biochemical properties of the purified enzyme. In the presence of delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling []. The delta protein, contains two distinct regions, an N-terminal domain and a glutamate and aspartate residue-rich C-terminal region [].; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent; PDB: 2KRC_A.

>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=90.99  E-value=0.24  Score=39.03  Aligned_cols=27  Identities=11%  Similarity=0.412  Sum_probs=24.6

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCcchhhh
Q 031883           36 PTQQAYSIAQSLYGIIKQHGPLTVSNT   62 (151)
Q Consensus        36 P~Eqa~tItr~l~dIlkeHGPLTVsnt   62 (151)
                      -+||...|...|.+++++||.+|+.+-
T Consensus         6 T~eer~eLk~rIvElVRe~GRiTi~ql   32 (127)
T PF06163_consen    6 TPEEREELKARIVELVREHGRITIKQL   32 (127)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCccHHHH
Confidence            379999999999999999999999863

>PF03981 Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone ; InterPro: IPR021150 Saccharomyces cerevisiae ubiquinol-cytochrome C chaperone is required for assembly of coenzyme QF-2-cytochrome C reductase

Probab=83.93  E-value=4.4  Score=29.38  Aligned_cols=51  Identities=18%  Similarity=0.275  Sum_probs=43.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccc
Q 031883           34 KVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRK   91 (151)
Q Consensus        34 kvP~Eqa~tItr~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq   91 (151)
                      +.-++++..|.|.|+|.+       ..+.++++.|.|++.+.....||-|-..+.++-
T Consensus        28 k~~~~~~~~~~q~l~~~~-------~~d~~~~l~~~gv~d~~~~k~~k~l~~~~~g~~   78 (141)
T PF03981_consen   28 KAEGKEGKELEQALFDKF-------FEDMDERLREMGVGDLSVGKRMKKLQEQFYGRL   78 (141)
T ss_pred             ccccccHHHHHHHHHHHH-------HHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHH
Confidence            333378899999999987       568999999999999999999999888877764

It appears to be found in a number of different organisms including Homo sapiens, Caenorhabditis elegans and Rhizobium meliloti. This entry also contains bacterial proteins belonging to the UPF0174 family.

>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea

Probab=83.01  E-value=4.8  Score=28.75  Aligned_cols=61  Identities=13%  Similarity=0.201  Sum_probs=47.5

Q ss_pred             HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEeeccCCCcceeeecCCC
Q 031883           46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPE  113 (151)
Q Consensus        46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~CnhvG~~KqFLytt~~~  113 (151)
                      .|.+||=++||+|+.+..+++.+.  .++ +++=.+-+|+=|-++..|...  ..  .+.|+|++-.+
T Consensus         7 ~IM~~lW~~~~~t~~eI~~~l~~~--~~~-~~sTv~t~L~rL~~Kg~l~~~--~~--gr~~~Y~p~is   67 (115)
T PF03965_consen    7 EIMEILWESGEATVREIHEALPEE--RSW-AYSTVQTLLNRLVEKGFLTRE--KI--GRAYVYSPLIS   67 (115)
T ss_dssp             HHHHHHHHHSSEEHHHHHHHHCTT--SS---HHHHHHHHHHHHHTTSEEEE--EE--TTCEEEEESSS
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHhc--ccc-chhHHHHHHHHHHhCCceeEe--ec--CCceEEEeCCc
Confidence            578999999999999999999887  555 566777888889999988764  22  46899986543

Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....

>PF06224 HTH_42: Winged helix DNA-binding domain; InterPro: IPR009351 This is a family of conserved bacterial proteins with unknown function

Probab=82.41  E-value=6.4  Score=31.93  Aligned_cols=59  Identities=20%  Similarity=0.346  Sum_probs=47.4

Q ss_pred             CCCChHHHHHHHHHHHHHHHHhCCcchhhhhHHHHHh---ccCCCCchhHHHHHHHHhhcccee
Q 031883           33 PKVPTQQAYSIAQSLYGIIKQHGPLTVSNTWIHAKDA---GISGLNGKTHMKIMLKWMRGRKML   93 (151)
Q Consensus        33 pkvP~Eqa~tItr~l~dIlkeHGPLTVsntW~hake~---gi~gL~SK~HMKimLkWMreRq~l   93 (151)
                      .....++...++..|.+.|+++||+|-++.-+++.+.   +..+..  ...+.+|..|..+-.|
T Consensus        76 ~~~~~~~~~~~~~~v~~~L~~~gplt~~eL~~~l~~~~~~~~~~~~--~~~~~~l~~l~~~G~l  137 (327)
T PF06224_consen   76 LGLTPEELERLAEAVLDALRADGPLTRAELREALAEAGWWGWGGPS--SPWKHLLEYLWYRGLL  137 (327)
T ss_pred             cccccchHHHHHHHHHHHHHhcCCCCHHHHHHHhhhccccCCCCCC--chHHHHHHHHHhCCeE
Confidence            4567778888999999999999999999999999888   444333  3677888888877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	81.65

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=81.65  E-value=4.5  Score=25.48  Aligned_cols=50  Identities=8%  Similarity=0.183  Sum_probs=40.6

Q ss_pred             HHHHHHHHHh--CCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEE
Q 031883           45 QSLYGIIKQH--GPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLF   96 (151)
Q Consensus        45 r~l~dIlkeH--GPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~   96 (151)
                      ..|+++|.++  +|+|+.+.++.+++.+. ++ |+.=.-..|+.|.+...|..+
T Consensus        20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~-~i-s~~TVyR~L~~L~~~Glv~~~   71 (83)
T 2fu4_A           20 LKILEVLQEPDNHHVSAEDLYKRLIDMGE-EI-GLATVYRVLNQFDDAGIVTRH   71 (83)
T ss_dssp             HHHHHHHTSGGGSSBCHHHHHHHHHHTTC-CC-CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHhCC-CC-CHhhHHHHHHHHHHCCCeEEE
Confidence            4578888877  79999999999988753 33 677788889999999998755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d1p6ra_	82	Penicillinase repressor BlaI {Bacillus licheniform	83.82

>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Penicillinase repressor
domain: Penicillinase repressor BlaI
species: Bacillus licheniformis [TaxId: 1402]

Probab=83.82  E-value=2.4  Score=27.00  Aligned_cols=62  Identities=13%  Similarity=0.178  Sum_probs=48.7

Q ss_pred             HHHHHHHHhCCcchhhhhHHHHHhccCCCCchhHHHHHHHHhhccceeeEEeeccCCCcceeeecCCCC
Q 031883           46 SLYGIIKQHGPLTVSNTWIHAKDAGISGLNGKTHMKIMLKWMRGRKMLKLFCNGVGSNKKFLHSTLPEE  114 (151)
Q Consensus        46 ~l~dIlkeHGPLTVsntW~hake~gi~gL~SK~HMKimLkWMreRq~lKL~CnhvG~~KqFLytt~~~~  114 (151)
                      .|.+||=++||+|+.+.-+.+.+.  .++ +.+=.+-+|+=|-++..|..    ....+.|+|++--+.
T Consensus        13 ~IM~~lW~~~~~t~~ei~~~l~~~--~~~-~~tTv~T~L~rL~~KG~l~~----~k~gr~~~Y~p~is~   74 (82)
T d1p6ra_          13 EVMKVIWKHSSINTNEVIKELSKT--STW-SPKTIQTMLLRLIKKGALNH----HKEGRVFVYTPNIDE   74 (82)
T ss_dssp             HHHHHHHTSSSEEHHHHHHHHHHH--SCC-CHHHHHHHHHHHHHTTSEEE----EEETTEEEEEESCSS
T ss_pred             HHHHHHHhCCCCCHHHHHHHhccc--cCC-cHhHHHHHHHHHHHCCCeEE----EecCCeEEEEecCCH
Confidence            578888899999999999998774  344 46677888888999999874    345678999976553