Citrus Sinensis ID: 031892


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
MENKRQESASSSSSPINFDHLFGPKDSSSSATTGGFGSIFSPPTAVQGRGSSHSGSIIGSLRKQGESSKGGESNIFNSKDKSSIYQSESAEPCYFSSSIYYGGQENYSPRTKATTESHHHVVKKDGDEDDPNGNNSNSASRGNWWQGSLYY
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccEccccccccccHHHccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccEEEEcccccccccccccccccccEEEcccccccccccccccccccccccccccc
menkrqesassssspinfdhlfgpkdssssattggfgsifspptavqgrgsshsgsIIGSLrkqgesskggesnifnskdkssiyqsesaepcyfsssiyyggqenysprtkatteshhhvvkkdgdeddpngnnsnsasrgnwwqgslyy
menkrqesassssspinfDHLFGPKDSSSSATTGGFGSIFSPPTAVQGRGSSHSGSIIGSlrkqgesskggesnifnskdkssiyqSESAEPCYFSSSIYYGGQENYSPRTKATTESHHHvvkkdgdeddpngnnsnsasrgnwwqgslyy
MENKRQESASSSSSPINFDHLFGPKDssssattggfgsifsPPTAVQgrgsshsgsiigsLRKQGESSKGGESNIFNSKDKSSIYQSESAEPCYFSSSIYYGGQENYSPRTKATTESHHHVVKKDGDEDDPngnnsnsasrgnWWQGSLYY
********************************************************************************************CYFSSSIYYG*************************************************
**********************************************************************************************FSSSIYYGGQEN*******************************SASRGNWWQGSLYY
**************PINFDHLFGPKDSSSSATTGGFGSIFSPPT************IIGS************SNIFNSKDKSSIYQSESAEPCYFSSSIYYGGQENYS******************************ASRGNWWQGSLYY
************************************************************************************Y*SESAEPCYFSSSIYYGGQENYSPR********HH******D*****************WQ*****
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iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MENKRQESASSSSSPINFDHLFGPKDSSSSATTGGFGSIFSPPTAVQGRGSSHSGSIIGSLRKQGESSKGGESNIFNSKDKSSIYQSESAEPCYFSSSIYYGGQENYSPRTKATTESHHHVVKKDGDEDDPNGNNSNSASRGNWWQGSLYY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query151
224098489150 predicted protein [Populus trichocarpa] 0.947 0.953 0.601 1e-34
255566540149 conserved hypothetical protein [Ricinus 0.933 0.946 0.603 3e-32
296086145160 unnamed protein product [Vitis vinifera] 0.960 0.906 0.578 5e-32
224112647165 predicted protein [Populus trichocarpa] 0.913 0.836 0.532 1e-27
255558924160 conserved hypothetical protein [Ricinus 0.860 0.812 0.493 3e-27
225434778154 PREDICTED: uncharacterized protein LOC10 0.927 0.909 0.466 3e-26
224106371162 predicted protein [Populus trichocarpa] 0.860 0.802 0.461 5e-25
356569336161 PREDICTED: uncharacterized protein LOC10 0.953 0.894 0.541 2e-23
356537962203 PREDICTED: uncharacterized protein LOC10 0.966 0.719 0.531 3e-20
357505741156 hypothetical protein MTR_7g065150 [Medic 0.960 0.929 0.438 6e-20
>gi|224098489|ref|XP_002311193.1| predicted protein [Populus trichocarpa] gi|222851013|gb|EEE88560.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/158 (60%), Positives = 113/158 (71%), Gaps = 15/158 (9%)

Query: 1   MENKRQESASSSSSPINFDHLFGPKDSSSSATT--GGFGSIFSPPTAV-QGRGSSHSGSI 57
           MEN RQ  ASS      FDHLFGPKDSSSS++   G FGSIF PP+ V  GR S  +G+ 
Sbjct: 1   MENNRQVGASS------FDHLFGPKDSSSSSSASSGIFGSIFPPPSKVPAGRDSGTTGNH 54

Query: 58  IGS---LRKQGESSKG-GESNIFNSKDKSSIYQSESAEPCYFSSSIYYGGQENYSPRTKA 113
           +G+   +     + K  GES+  + K +SS+YQ+E+ EPCYFSSSIYYGGQENYSPRTK 
Sbjct: 55  VGNETYVNPDNATRKAKGESSGISGKGQSSVYQNETPEPCYFSSSIYYGGQENYSPRTK- 113

Query: 114 TTESHHHVVKKDGDEDDPNGNNSNSASRGNWWQGSLYY 151
            +ES  HV KKD  +DDPNGN+ NSASRGNWWQGSLYY
Sbjct: 114 NSES-QHVFKKDYGKDDPNGNDPNSASRGNWWQGSLYY 150




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566540|ref|XP_002524255.1| conserved hypothetical protein [Ricinus communis] gi|223536532|gb|EEF38179.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|296086145|emb|CBI31586.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224112647|ref|XP_002316250.1| predicted protein [Populus trichocarpa] gi|222865290|gb|EEF02421.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255558924|ref|XP_002520485.1| conserved hypothetical protein [Ricinus communis] gi|223540327|gb|EEF41898.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225434778|ref|XP_002281905.1| PREDICTED: uncharacterized protein LOC100263768 [Vitis vinifera] gi|297745986|emb|CBI16042.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224106371|ref|XP_002314144.1| predicted protein [Populus trichocarpa] gi|222850552|gb|EEE88099.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356569336|ref|XP_003552858.1| PREDICTED: uncharacterized protein LOC100797772 [Glycine max] Back     alignment and taxonomy information
>gi|356537962|ref|XP_003537475.1| PREDICTED: uncharacterized protein LOC100795477 [Glycine max] Back     alignment and taxonomy information
>gi|357505741|ref|XP_003623159.1| hypothetical protein MTR_7g065150 [Medicago truncatula] gi|355498174|gb|AES79377.1| hypothetical protein MTR_7g065150 [Medicago truncatula] gi|388492720|gb|AFK34426.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query151
TAIR|locus:1009023254146 AT3G55646 "AT3G55646" [Arabido 0.913 0.945 0.376 2.1e-20
TAIR|locus:504954988131 AT5G05965 "AT5G05965" [Arabido 0.841 0.969 0.317 1.3e-13
TAIR|locus:2185168149 SIS "AT5G02020" [Arabidopsis t 0.947 0.959 0.305 8.2e-12
TAIR|locus:504955928151 AT2G39855 "AT2G39855" [Arabido 0.715 0.715 0.356 3.5e-11
TAIR|locus:2153286135 AT5G59080 "AT5G59080" [Arabido 0.874 0.977 0.311 5.8e-11
TAIR|locus:2102727153 AT3G46880 "AT3G46880" [Arabido 0.284 0.281 0.5 1.9e-08
TAIR|locus:1009023254 AT3G55646 "AT3G55646" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 58/154 (37%), Positives = 78/154 (50%)

Query:     2 ENKRQ-ESASSSSSPIN-FDHLFGPKDXXXXXXXXXXXXXXX--PPTAVQXXXXXXXXXX 57
             +NK++  SASSSSS ++ FDH+FGP+                  PP+A Q          
Sbjct:     5 KNKKKIVSASSSSSSLSSFDHIFGPRVSSSSSSSATGLFKSIFPPPSADQLGRQVDFASQ 64

Query:    58 XXXLRKQGESSKGGESNIFNSKDKSSIYQSESAEPCYFSSSIYYGGQENYSPRTKATTES 117
                ++ Q  ++KG  SN    K+K S Y  E+  PC+ SSS+YYGGQE YS    +TT +
Sbjct:    65 GGHVKYQSPNAKGERSN---KKEKKSYYNEETEPPCHLSSSLYYGGQETYS----STTTT 117

Query:   118 HHHVVKKDGDEDDPXXXXXXXXXXXXWWQGSLYY 151
              H   KKDG+E D             WW+GSLYY
Sbjct:   118 THDTYKKDGEEGD-----SKRASRGNWWEGSLYY 146




GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:504954988 AT5G05965 "AT5G05965" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185168 SIS "AT5G02020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955928 AT2G39855 "AT2G39855" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153286 AT5G59080 "AT5G59080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102727 AT3G46880 "AT3G46880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
grail3.0049026201
hypothetical protein (151 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00