Citrus Sinensis ID: 031896

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MTLISSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDPMQRQALNERINSQGFMTLPPPSSRTSELNSFRASSRPYYLQNGHTSTGQSGGAIASPAKSMVSKIMDLMFGI
Secondary Structure (PSIPRED)
ccccccEEEEEEccccccHHHHHHHHHHcccEEEEEcccccccEEEEEcccHHHHHHHHHHcccEEccEEEEEEEEccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEcccHHHHHHHHHHHHHcccEEEcccccccccEEEEEEccHHHHHHHHHHcccEEccEEEEEEEEccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtlissflivpfrfppadtnLVLREFEKCGVIlkhvpgprdanwmHILYQNRSDAQKALSkngmqingvlivgvkpldpmQRQALNERinsqgfmtlpppssrtselnsfrassrpyylqnghtstgqsggaiaspAKSMVSKIMDLMFGI
Flexible Loop (DISEMBL)
mtlissflivpfrfpPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDPMQRQALNERinsqgfmtlpppssRTSELNSFRASSRPYYLQNGhtstgqsggaiasPAKSMVSKIMDLMFGI
Low Complexity Region (SEG)
MTLISSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDPMQRQALNERINSQGFMTLPPPSSRTSELNSFRASSRPYYLQNGHTSTGQSGGAIASPAKSMVSKIMDLMFGI
Disordered region (IsUnstruct)
**LISSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDA**ALSKNGMQINGVLIVGVKPL**************************************************************************
Disordered Region (DISOPRED)
*TLISSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD***************************************************************SKIMDLMFGI
Disordered Region (DISEMBL)
MTLISSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDPMQRQALNERINSQGFMTL************FRASSRPYYLQNGHTSTGQSGGAIASPAKSMVSKIMDLMFGI
Disordered Region (DISPRO)
*TLISSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDPMQRQALN*****************************************************MVSK**DLMFGI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLISSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDPMQRQALNERINSQGFMTLPPPSSRTSELNSFRASSRPYYLQNGHTSTGQSGGAIASPAKSMVSKIMDLMFGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
Q6P6X9	308	Nucleoporin NUP53 OS=Dani	yes	no	0.933	0.457	0.358	4e-13
Q8NFH5	326	Nucleoporin NUP53 OS=Homo	yes	no	0.913	0.423	0.321	8e-11
Q66IJ0	330	Nucleoporin NUP53 OS=Xeno	yes	no	0.913	0.418	0.328	6e-10
Q68FY1	325	Nucleoporin NUP53 OS=Ratt	yes	no	0.860	0.4	0.307	7e-10
Q8R4R6	325	Nucleoporin NUP53 OS=Mus	yes	no	0.880	0.409	0.339	2e-09
O13838	371	Nucleoporin nup40 OS=Schi	yes	no	0.437	0.177	0.346	3e-06

>sp|Q6P6X9|NUP53_DANRE Nucleoporin NUP53 OS=Danio rerio GN=nup35 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 7/148 (4%)

Query: 9   IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
           I  F FPPA  + +L +F + G ILKHV      NWMH+ YQ++  A+KALSK+G     
Sbjct: 161 ITVFGFPPASASYILLQFAQYGNILKHVMS-NTGNWMHVQYQSKLQARKALSKDGKIFGE 219

Query: 69  VLIVGVKP-LDPMQRQALNERINSQGFMTLP--PPSSRTSELNSFRASSRPYYLQ-NGHT 124
            +++GVKP +D    ++L++   S    T P   P + +  L++ R+  RP        +
Sbjct: 220 AIMIGVKPCIDKSVMESLDKGSTSSSVFTPPVKAPCTPSHPLSTPRSVMRPLSAAYKASS 279

Query: 125 STGQSGGAIASPAK--SMVSKIMDLMFG 150
           S  Q      +P K  S VSK M+ MFG
Sbjct: 280 SDYQVVSDQQTPKKDESFVSKAMEYMFG 307

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors.
Danio rerio (taxid: 7955)

>sp|Q8NFH5|NUP53_HUMAN Nucleoporin NUP53 OS=Homo sapiens GN=NUP35 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 27/165 (16%)

Query: 3   LISSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKN 62
           L  S++ V F FP A  + +L +F + G ILKHV      NWMHI YQ++  A+KALSK+
Sbjct: 171 LDDSWVTV-FGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKD 228

Query: 63  GMQINGVLIVGVKP------LDPMQRQALNE-------RINSQGFMTLPPPSSRTSEL-- 107
           G      +++GVKP      ++   R AL+         I + G  T P  + R S +  
Sbjct: 229 GRIFGESIMIGVKPCIDKSVMESSDRCALSSPSLAFTPPIKTLGTPTQPGSTPRISTMRP 288

Query: 108 --NSFRASSRPYYLQNGHTSTGQSGGAIASPAKSMVSKIMDLMFG 150
              +++AS+  Y + +   +  +         +S+VSK M+ MFG
Sbjct: 289 LATAYKASTSDYQVISDRQTPKKD--------ESLVSKAMEYMFG 325

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs). Can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. May play a role in the association of MAD1 with the NPC.

Homo sapiens (taxid: 9606)

>sp|Q66IJ0|NUP53_XENTR Nucleoporin NUP53 OS=Xenopus tropicalis GN=nup35 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 11/149 (7%)

Query: 12  FRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLI 71
           F FP A  + +L +F + G I+KHV    + NWMHI YQ++  A+KALSK+G      ++
Sbjct: 182 FGFPQASASYILLQFAQYGNIIKHVMS-NNGNWMHIQYQSKLQARKALSKDGRIFGESIM 240

Query: 72  VGVKPLDPMQRQALNERINSQGFMTL-PPP----SSRTSELNSFRASS-RPY--YLQNGH 123
           +GVKP          E++++    ++  PP     + T  + + RA+S RP     +   
Sbjct: 241 IGVKPCIDKSVMEATEKVSTPTVSSVFTPPVKNIGTPTQSVGTPRAASMRPLAATYKTPA 300

Query: 124 TSTGQSGGAIASPAK--SMVSKIMDLMFG 150
           ++  Q      +P K  S+VSK M+ MFG
Sbjct: 301 SADYQVVADKQAPRKDESIVSKAMEYMFG 329

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors.

Xenopus tropicalis (taxid: 8364)

>sp|Q68FY1|NUP53_RAT Nucleoporin NUP53 OS=Rattus norvegicus GN=Nup35 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 26/156 (16%)

Query: 12  FRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLI 71
           F FP A  + +L +F + G ILKHV      NWMHI YQ++  A+KALSK+G      ++
Sbjct: 178 FGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGESIM 236

Query: 72  VGVKPL---DPMQRQ----------ALNERINSQGFMTLPPPSSRTSEL----NSFRASS 114
           +GVKP    + M+            A    I + G  T P  + R S +     +++AS+
Sbjct: 237 IGVKPCIDKNVMENSDRGVLSSPSLAFTPPIRTLGTPTQPGSTPRVSTMRPLATAYKAST 296

Query: 115 RPYYLQNGHTSTGQSGGAIASPAKSMVSKIMDLMFG 150
             Y + +   +  +         +S+VS+ M+ MFG
Sbjct: 297 SDYQVISDRQTPKKD--------ESLVSRAMEYMFG 324

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. May play a role in the association of MAD1 with the NPC.

Rattus norvegicus (taxid: 10116)

>sp|Q8R4R6|NUP53_MOUSE Nucleoporin NUP53 OS=Mus musculus GN=Nup35 PE=1 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 20/153 (13%)

Query: 12  FRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLI 71
           F FP A  + +L +F + G ILKHV      NWMHI YQ++  A+KALSK+G      ++
Sbjct: 178 FGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGESIM 236

Query: 72  VGVKP------LDPMQRQALNERINSQGFMT------LPPPSSRTSELNSFRASSRPYYL 119
           +GVKP      ++   R  L+    S  F T       P  S  T  +++ R  +  Y  
Sbjct: 237 IGVKPCIDKNVMENSDRGVLSS--PSLAFTTPIRTLGTPTQSGSTPRVSTMRPLATAY-- 292

Query: 120 QNGHTSTGQSGGAIASPAK--SMVSKIMDLMFG 150
               TS  Q      +P K  S+VS+ M+ MFG
Sbjct: 293 -KASTSDYQVISDRQTPKKDESLVSRAMEYMFG 324

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. May play a role in the association of MAD1 with the NPC.

Mus musculus (taxid: 10090)

>sp|O13838|NUP40_SCHPO Nucleoporin nup40 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup40 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 12/78 (15%)

Query: 9   IVPFRFPPADTNLVLREFEKCGVILKH------------VPGPRDANWMHILYQNRSDAQ 56
           ++ F FPP  TN V+ EF + G I+                GP   NW+ + Y   S A 
Sbjct: 172 VIVFGFPPELTNQVIAEFSRFGTIISENSLTASSAGFTPSKGPISGNWLQLTYAEPSSAA 231

Query: 57  KALSKNGMQINGVLIVGV 74
           KA+  NGM IN   +VG 
Sbjct: 232 KAVLSNGMLINDSFMVGC 249

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. Active directional transport is assured by both, a Phe-Gly (FG) repeat affinity gradient for these transport factors across the NPC and a transport cofactor concentration gradient across the nuclear envelope (GSP1 and GSP2 GTPases associated predominantly with GTP in the nucleus, with GDP in the cytoplasm).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
224059134	329	predicted protein [Populus trichocarpa]	0.927	0.425	0.822	9e-62
225442511	317	PREDICTED: nucleoporin NUP53 [Vitis vini	0.920	0.438	0.836	1e-61
359806268	331	uncharacterized protein LOC100783752 [Gl	0.947	0.432	0.762	4e-60
449480650	330	PREDICTED: LOW QUALITY PROTEIN: nucleopo	0.927	0.424	0.778	3e-59
449447801	330	PREDICTED: nucleoporin NUP53-like [Cucum	0.927	0.424	0.778	6e-59
356550508	331	PREDICTED: nucleoporin NUP53-like [Glyci	0.947	0.432	0.741	2e-58
357454825	330	Nucleoporin NUP53 [Medicago truncatula]	0.927	0.424	0.757	5e-58
255549868	332	Nucleoporin NUP53, putative [Ricinus com	0.947	0.430	0.805	9e-58
18401087	329	nuclear pore complex protein Nup53 [Arab	0.907	0.416	0.723	2e-52
17979410	329	unknown protein [Arabidopsis thaliana]	0.900	0.413	0.728	7e-52

>gi|224059134|ref|XP_002299732.1| predicted protein [Populus trichocarpa] gi|222846990|gb|EEE84537.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (614), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 116/141 (82%), Positives = 127/141 (90%), Gaps = 1/141 (0%)

Query: 12  FRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLI 71
           + F P DTNLVLREFEKCGVILKHVPGPR+ANWMHILYQ+R+DAQKALSKNGMQINGVLI
Sbjct: 189 YGFAPGDTNLVLREFEKCGVILKHVPGPREANWMHILYQSRADAQKALSKNGMQINGVLI 248

Query: 72  VGVKPLDPMQRQALNERINSQGFMTLPPPSS-RTSELNSFRASSRPYYLQNGHTSTGQSG 130
           +GVK +DPMQRQALNERIN+QGFMTLPPPSS RT + N+ RAS RP+YLQNG TS  QSG
Sbjct: 249 IGVKLVDPMQRQALNERINNQGFMTLPPPSSTRTPDSNALRASPRPHYLQNGSTSARQSG 308

Query: 131 GAIASPAKSMVSKIMDLMFGI 151
           G IASPAKSMVSKI D+MFGI
Sbjct: 309 GVIASPAKSMVSKIFDVMFGI 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442511|ref|XP_002284034.1| PREDICTED: nucleoporin NUP53 [Vitis vinifera] gi|297743215|emb|CBI36082.3| unnamed protein product [Vitis vinifera]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 118/141 (83%), Positives = 126/141 (89%), Gaps = 2/141 (1%)

Query: 12  FRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLI 71
           + F P DTNLVLREFEKCGVILKHVPGPRDANW+HILYQNRSDAQKALSKNGMQINGVLI
Sbjct: 178 YGFSPGDTNLVLREFEKCGVILKHVPGPRDANWIHILYQNRSDAQKALSKNGMQINGVLI 237

Query: 72  VGVKPLDPMQRQALNERINSQGFMTLPPP-SSRTSELNSFRASSRPYYLQNGHTSTGQSG 130
           VGVKPLDPMQRQALNER+N+QGFMTLPPP SSR+ E N  R S RPYYLQNG  +  QS 
Sbjct: 238 VGVKPLDPMQRQALNERLNNQGFMTLPPPASSRSLESNPLRVSPRPYYLQNGSNAR-QSS 296

Query: 131 GAIASPAKSMVSKIMDLMFGI 151
           GAIASPAKS+VSKIMDLMFG+
Sbjct: 297 GAIASPAKSVVSKIMDLMFGV 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806268|ref|NP_001240960.1| uncharacterized protein LOC100783752 [Glycine max] gi|255639315|gb|ACU19955.1| unknown [Glycine max]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 109/143 (76%), Positives = 125/143 (87%)

Query: 9   IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
           +  + F P DTN+VLREFEKCG ILKHVPGPRDANWMHILYQNRSDA KAL+KNGMQING
Sbjct: 189 VTVYGFSPGDTNMVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHKALNKNGMQING 248

Query: 69  VLIVGVKPLDPMQRQALNERINSQGFMTLPPPSSRTSELNSFRASSRPYYLQNGHTSTGQ 128
           VLIVGVK LDPMQRQALNER+ +QGFM LP PS+R SE++S +A SRPYYLQNG+++  Q
Sbjct: 249 VLIVGVKLLDPMQRQALNERLKNQGFMPLPLPSARNSEVSSLKAPSRPYYLQNGNSTARQ 308

Query: 129 SGGAIASPAKSMVSKIMDLMFGI 151
           +GG IASP KS+VSKIMDLMFG+
Sbjct: 309 TGGTIASPTKSLVSKIMDLMFGV 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449480650|ref|XP_004155957.1| PREDICTED: LOW QUALITY PROTEIN: nucleoporin NUP53-like [Cucumis sativus]

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/140 (77%), Positives = 124/140 (88%)

Query: 12  FRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLI 71
           + F PADTNLVLREFEKCG ILKH+PGPRDANWMHILYQNRSDAQKAL+KNG+QINGVLI
Sbjct: 191 YGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNKNGIQINGVLI 250

Query: 72  VGVKPLDPMQRQALNERINSQGFMTLPPPSSRTSELNSFRASSRPYYLQNGHTSTGQSGG 131
           VGVKP+DPM RQAL+ER+N+ GFM +PP SSRTSEL + R   RPY LQNG+TS   SGG
Sbjct: 251 VGVKPVDPMHRQALDERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQNGYTSARHSGG 310

Query: 132 AIASPAKSMVSKIMDLMFGI 151
           AIASP+KS+VSK+MDLMFG+
Sbjct: 311 AIASPSKSLVSKVMDLMFGV 330

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447801|ref|XP_004141656.1| PREDICTED: nucleoporin NUP53-like [Cucumis sativus]

 Score =  231 bits (590), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 109/140 (77%), Positives = 123/140 (87%)

Query: 12  FRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLI 71
           + F PADTNLVLREFEKCG ILKH+PGPRDANWMHILYQNRSDAQKAL+KNG+QINGVLI
Sbjct: 191 YGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNKNGIQINGVLI 250

Query: 72  VGVKPLDPMQRQALNERINSQGFMTLPPPSSRTSELNSFRASSRPYYLQNGHTSTGQSGG 131
           VGVKP+DPM RQAL ER+N+ GFM +PP SSRTSEL + R   RPY LQNG+TS   SGG
Sbjct: 251 VGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQNGYTSARHSGG 310

Query: 132 AIASPAKSMVSKIMDLMFGI 151
           AIASP+KS+VSK+MDLMFG+
Sbjct: 311 AIASPSKSLVSKVMDLMFGV 330

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550508|ref|XP_003543628.1| PREDICTED: nucleoporin NUP53-like [Glycine max]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 124/143 (86%)

Query: 9   IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
           +  + F P DTN+VLREFEKCG ILKHVPGPRDANW+HILYQNRSDA KAL+KNGMQING
Sbjct: 189 VTVYGFSPGDTNMVLREFEKCGEILKHVPGPRDANWVHILYQNRSDAHKALNKNGMQING 248

Query: 69  VLIVGVKPLDPMQRQALNERINSQGFMTLPPPSSRTSELNSFRASSRPYYLQNGHTSTGQ 128
           VLIVGVK LDPMQRQALNER+ +QGFM LP  S+R SE+++ +A SRPYYLQNG+++  Q
Sbjct: 249 VLIVGVKLLDPMQRQALNERLKNQGFMPLPLASARNSEVSTLKAPSRPYYLQNGNSTARQ 308

Query: 129 SGGAIASPAKSMVSKIMDLMFGI 151
           +GG IASP KS+VSKIMDLMFG+
Sbjct: 309 TGGTIASPTKSLVSKIMDLMFGV 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454825|ref|XP_003597693.1| Nucleoporin NUP53 [Medicago truncatula] gi|355486741|gb|AES67944.1| Nucleoporin NUP53 [Medicago truncatula]

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 106/140 (75%), Positives = 121/140 (86%)

Query: 12  FRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLI 71
           + F P DTNLVLREFEKCG ILKHVPGPRDANWMHILYQNRS AQ AL+KNG+QINGVLI
Sbjct: 191 YGFSPNDTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSAAQNALNKNGIQINGVLI 250

Query: 72  VGVKPLDPMQRQALNERINSQGFMTLPPPSSRTSELNSFRASSRPYYLQNGHTSTGQSGG 131
           +GVKPLDPMQRQAL ER+N+QGFM LP P++R SE+++ RA SRPYYLQNG+ +T Q+GG
Sbjct: 251 IGVKPLDPMQRQALTERLNNQGFMPLPLPTARNSEVSTSRAPSRPYYLQNGNATTRQTGG 310

Query: 132 AIASPAKSMVSKIMDLMFGI 151
            IASP KS  SKIMDLMF +
Sbjct: 311 TIASPTKSFASKIMDLMFAV 330

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549868|ref|XP_002515985.1| Nucleoporin NUP53, putative [Ricinus communis] gi|223544890|gb|EEF46405.1| Nucleoporin NUP53, putative [Ricinus communis]

 Score =  227 bits (579), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 116/144 (80%), Positives = 130/144 (90%), Gaps = 1/144 (0%)

Query: 9   IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
           +  + F P DTNLVLREFEKCGVILKHVPGPRDANWMHILYQ+RSDAQKALSKNGMQING
Sbjct: 189 VTVYGFSPGDTNLVLREFEKCGVILKHVPGPRDANWMHILYQSRSDAQKALSKNGMQING 248

Query: 69  VLIVGVKPLDPMQRQALNERINSQGFMTL-PPPSSRTSELNSFRASSRPYYLQNGHTSTG 127
           VLIVGVKP+DPMQRQALNER+N+QGFMTL PP SSR+SEL +  ASSRPY++QNG +S  
Sbjct: 249 VLIVGVKPVDPMQRQALNERLNNQGFMTLPPPSSSRSSELKTLGASSRPYHIQNGSSSAR 308

Query: 128 QSGGAIASPAKSMVSKIMDLMFGI 151
           QSGG+IASPAKS+VSKI D+MFGI
Sbjct: 309 QSGGSIASPAKSVVSKIFDVMFGI 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401087|ref|NP_566542.1| nuclear pore complex protein Nup53 [Arabidopsis thaliana] gi|2062172|gb|AAB63646.1| unknown protein [Arabidopsis thaliana] gi|9279713|dbj|BAB01270.1| unnamed protein product [Arabidopsis thaliana] gi|21592552|gb|AAM64501.1| unknown [Arabidopsis thaliana] gi|26983840|gb|AAN86172.1| unknown protein [Arabidopsis thaliana] gi|332642275|gb|AEE75796.1| nuclear pore complex protein Nup53 [Arabidopsis thaliana]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/141 (72%), Positives = 118/141 (83%), Gaps = 4/141 (2%)

Query: 12  FRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLI 71
           + F P DTNLVLREFEKCG++LKHVPGPR+ANWMHILYQNRSDA KAL+K GM INGV+I
Sbjct: 192 YGFSPGDTNLVLREFEKCGMVLKHVPGPRNANWMHILYQNRSDAHKALNKAGMMINGVVI 251

Query: 72  VGVKPLDPMQRQALNERINSQGFMTLPPPSSRTSELNSFRASSRPYYLQNGHTSTGQ-SG 130
           VGVKP+DP+Q+QALNER+N+QGFM LPPPSS     N+ R  SRP YLQNG   + Q SG
Sbjct: 252 VGVKPVDPIQKQALNERLNNQGFMPLPPPSSTR---NTARPLSRPQYLQNGSAFSPQPSG 308

Query: 131 GAIASPAKSMVSKIMDLMFGI 151
           GA+ASP+KSMVSK  DLMFG+
Sbjct: 309 GAMASPSKSMVSKFFDLMFGV 329

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17979410|gb|AAL49847.1| unknown protein [Arabidopsis thaliana]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 102/140 (72%), Positives = 117/140 (83%), Gaps = 4/140 (2%)

Query: 12  FRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLI 71
           + F P DTNLVLREFEKCG++LKHVPGPR+ANWMHILYQNRSDA KAL+K GM INGV+I
Sbjct: 192 YGFSPGDTNLVLREFEKCGMVLKHVPGPRNANWMHILYQNRSDAHKALNKAGMMINGVVI 251

Query: 72  VGVKPLDPMQRQALNERINSQGFMTLPPPSSRTSELNSFRASSRPYYLQNGHTSTGQ-SG 130
           VGVKP+DP+Q+QALNER+N+QGFM LPPPSS     N+ R  SRP YLQNG   + Q SG
Sbjct: 252 VGVKPVDPIQKQALNERLNNQGFMPLPPPSSTR---NTARPLSRPQYLQNGSAFSPQPSG 308

Query: 131 GAIASPAKSMVSKIMDLMFG 150
           GA+ASP+KSMVSK  DLMFG
Sbjct: 309 GAMASPSKSMVSKFFDLMFG 328

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
TAIR|locus:2094937	329	AT3G16310 "AT3G16310" [Arabido	0.927	0.425	0.708	8.3e-51
ZFIN|ZDB-GENE-030131-9407	308	nup35 "nucleoporin 35" [Danio	0.933	0.457	0.358	1.2e-15
UNIPROTKB|J9P1M8	312	NUP35 "Uncharacterized protein	0.907	0.439	0.341	1.3e-12
UNIPROTKB|B4DYB4	309	NUP35 "Nucleoporin NUP53" [Hom	0.933	0.456	0.344	1.7e-12
UNIPROTKB|A6QPZ3	266	NUP35 "NUP35 protein" [Bos tau	0.933	0.530	0.344	1.7e-12
UNIPROTKB|Q8NFH5	326	NUP35 "Nucleoporin NUP53" [Hom	0.933	0.432	0.344	2e-12
RGD|1303069	325	Nup35 "nucleoporin 35" [Rattus	0.933	0.433	0.337	2.6e-12
UNIPROTKB|E1C8U1	320	NUP35 "Uncharacterized protein	0.933	0.440	0.337	5.3e-12
FB|FBgn0030943	331	CG6540 [Drosophila melanogaste	0.933	0.425	0.302	6e-12
POMBASE|SPAC19E9.01c	371	nup40 "nucleoporin Nup40" [Sch	0.668	0.272	0.304	4e-06

TAIR|locus:2094937 AT3G16310 "AT3G16310" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 102/144 (70%), Positives = 119/144 (82%)

Query:     9 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
             +  + F P DTNLVLREFEKCG++LKHVPGPR+ANWMHILYQNRSDA KAL+K GM ING
Sbjct:   189 VTVYGFSPGDTNLVLREFEKCGMVLKHVPGPRNANWMHILYQNRSDAHKALNKAGMMING 248

Query:    69 VLIVGVKPLDPMQRQALNERINSQGFMTLPPPSSRTSELNSFRASSRPYYLQNGHTSTGQ 128
             V+IVGVKP+DP+Q+QALNER+N+QGFM LPPPSS     N+ R  SRP YLQNG   + Q
Sbjct:   249 VVIVGVKPVDPIQKQALNERLNNQGFMPLPPPSSTR---NTARPLSRPQYLQNGSAFSPQ 305

Query:   129 -SGGAIASPAKSMVSKIMDLMFGI 151
              SGGA+ASP+KSMVSK  DLMFG+
Sbjct:   306 PSGGAMASPSKSMVSKFFDLMFGV 329

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030131-9407 nup35 "nucleoporin 35" [Danio rerio (taxid:7955)]

 Score = 197 (74.4 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 53/148 (35%), Positives = 78/148 (52%)

Query:     9 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
             I  F FPPA  + +L +F + G ILKHV      NWMH+ YQ++  A+KALSK+G     
Sbjct:   161 ITVFGFPPASASYILLQFAQYGNILKHVMS-NTGNWMHVQYQSKLQARKALSKDGKIFGE 219

Query:    69 VLIVGVKP-LDPMQRQALNERINSQGFMTLP--PPSSRTSELNSFRASSRPYYLQ-NGHT 124
              +++GVKP +D    ++L++   S    T P   P + +  L++ R+  RP        +
Sbjct:   220 AIMIGVKPCIDKSVMESLDKGSTSSSVFTPPVKAPCTPSHPLSTPRSVMRPLSAAYKASS 279

Query:   125 STGQSGGAIASPAK--SMVSKIMDLMFG 150
             S  Q      +P K  S VSK M+ MFG
Sbjct:   280 SDYQVVSDQQTPKKDESFVSKAMEYMFG 307

GO:0055085 "transmembrane transport" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|J9P1M8 NUP35 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 171 (65.3 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 53/155 (34%), Positives = 75/155 (48%)

Query:     9 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
             +  F FP A  + +L +F + G ILKHV      NWMHI YQ++  A+KALSK+G     
Sbjct:   162 VTVFGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGE 220

Query:    69 VLIVGVKPLDPMQRQALNER--INSQGFMTLPP---------PSSRTSELNSFRASSRPY 117
              +++GVKP         N+R  ++S      PP         P S T  +++ R  +  Y
Sbjct:   221 SIMIGVKPCIDKSVMENNDRCALSSPSLAFTPPIKTLGTPTQPGS-TPRISTMRPLATAY 279

Query:   118 YLQNGHTSTGQSGGAIASPAK--SMVSKIMDLMFG 150
                   TS  Q      +P K  S+VSK M+ MFG
Sbjct:   280 ---KASTSDYQVISDRQTPKKDESLVSKAMEYMFG 311

GO:0055085 "transmembrane transport" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

UNIPROTKB|B4DYB4 NUP35 "Nucleoporin NUP53" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 52/151 (34%), Positives = 76/151 (50%)

Query:     9 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
             +  F FP A  + +L +F + G ILKHV      NWMHI YQ++  A+KALSK+G     
Sbjct:   159 VTVFGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGE 217

Query:    69 VLIVGVKP-LDPMQRQALNERINSQGFMTLPPP----SSRTSELNSFRASS-RPYYLQ-N 121
              +++GVKP +D    ++ +    S   +   PP     + T   ++ R S+ RP      
Sbjct:   218 SIMIGVKPCIDKSVMESSDRCALSSPSLAFTPPIKTLGTPTQPGSTPRISTMRPLATAYK 277

Query:   122 GHTSTGQSGGAIASPAK--SMVSKIMDLMFG 150
               TS  Q      +P K  S+VSK M+ MFG
Sbjct:   278 ASTSDYQVISDRQTPKKDESLVSKAMEYMFG 308

GO:0055085 "transmembrane transport" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

UNIPROTKB|A6QPZ3 NUP35 "NUP35 protein" [Bos taurus (taxid:9913)]

 Score = 167 (63.8 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 52/151 (34%), Positives = 75/151 (49%)

Query:     9 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
             +  F FP A  + +L +F + G ILKHV      NWMHI YQ++  A+KALSK+G     
Sbjct:   116 VTVFGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGE 174

Query:    69 VLIVGVKP-LDPMQRQALNERINSQGFMTLPPP----SSRTSELNSFRASS-RPYYLQ-N 121
              +++GVKP +D    +  +    S   +   PP     + T   ++ R S+ RP      
Sbjct:   175 SIMIGVKPCIDKSVMENSDRCALSSPSLAFTPPIKTLGTPTQPGSAPRISTMRPLATAYK 234

Query:   122 GHTSTGQSGGAIASPAK--SMVSKIMDLMFG 150
               TS  Q      +P K  S+VSK M+ MFG
Sbjct:   235 ASTSDYQVISDRQTPKKDESLVSKAMEYMFG 265

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q8NFH5 NUP35 "Nucleoporin NUP53" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 52/151 (34%), Positives = 76/151 (50%)

Query:     9 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
             +  F FP A  + +L +F + G ILKHV      NWMHI YQ++  A+KALSK+G     
Sbjct:   176 VTVFGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGE 234

Query:    69 VLIVGVKP-LDPMQRQALNERINSQGFMTLPPP----SSRTSELNSFRASS-RPYYLQ-N 121
              +++GVKP +D    ++ +    S   +   PP     + T   ++ R S+ RP      
Sbjct:   235 SIMIGVKPCIDKSVMESSDRCALSSPSLAFTPPIKTLGTPTQPGSTPRISTMRPLATAYK 294

Query:   122 GHTSTGQSGGAIASPAK--SMVSKIMDLMFG 150
               TS  Q      +P K  S+VSK M+ MFG
Sbjct:   295 ASTSDYQVISDRQTPKKDESLVSKAMEYMFG 325

GO:0015031 "protein transport" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0005635 "nuclear envelope" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0008645 "hexose transport" evidence=TAS

GO:0010827 "regulation of glucose transport" evidence=TAS

GO:0015758 "glucose transport" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

RGD|1303069 Nup35 "nucleoporin 35" [Rattus norvegicus (taxid:10116)]

 Score = 169 (64.5 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 51/151 (33%), Positives = 76/151 (50%)

Query:     9 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
             +  F FP A  + +L +F + G ILKHV      NWMHI YQ++  A+KALSK+G     
Sbjct:   175 VTVFGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGE 233

Query:    69 VLIVGVKP-LDPMQRQALNERINSQGFMTLPPP----SSRTSELNSFRASS-RPYYLQ-N 121
              +++GVKP +D    +  +  + S   +   PP     + T   ++ R S+ RP      
Sbjct:   234 SIMIGVKPCIDKNVMENSDRGVLSSPSLAFTPPIRTLGTPTQPGSTPRVSTMRPLATAYK 293

Query:   122 GHTSTGQSGGAIASPAK--SMVSKIMDLMFG 150
               TS  Q      +P K  S+VS+ M+ MFG
Sbjct:   294 ASTSDYQVISDRQTPKKDESLVSRAMEYMFG 324

GO:0005634 "nucleus" evidence=ISO

GO:0005643 "nuclear pore" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0015288 "porin activity" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045111 "intermediate filament cytoskeleton" evidence=ISO

GO:0046930 "pore complex" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|E1C8U1 NUP35 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 166 (63.5 bits), Expect = 5.3e-12, P = 5.3e-12
 Identities = 51/151 (33%), Positives = 75/151 (49%)

Query:     9 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
             +  F FP A  + +L +F + G ILKHV      NWMHI YQ++  A+KALSK+G     
Sbjct:   170 VTVFGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGE 228

Query:    69 VLIVGVKPLDPMQRQALNERINSQGFMTL-PPPS----SRTSELNSFRASS-RPYYLQ-N 121
              +++GVKP          ER ++    ++  PPS    +     N+ + S+ RP      
Sbjct:   229 SIMIGVKPCVDKSVMENFERSSASSMPSVFTPPSKIVGTPVQPANTTKISTMRPLATAYK 288

Query:   122 GHTSTGQSGGAIASPAK--SMVSKIMDLMFG 150
               TS  Q      +P K  S+VSK M+ +FG
Sbjct:   289 ASTSDYQVVSDRQTPKKDESIVSKAMEYVFG 319

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

FB|FBgn0030943 CG6540 [Drosophila melanogaster (taxid:7227)]

 Score = 166 (63.5 bits), Expect = 6.0e-12, P = 6.0e-12
 Identities = 45/149 (30%), Positives = 75/149 (50%)

Query:     4 ISSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNG 63
             +S F +  F FPP   ++VL+ F  CG I+  V  P++ NWM++ Y +R ++ KAL+ N 
Sbjct:   188 LSDFWVTIFGFPPGAGSMVLQHFTVCGTIVDVVHAPQNGNWMYVRYSSRIESDKALNYNE 247

Query:    64 MQINGVLIVGVKPLDPMQRQALN-ERINSQGFMTLPPPSSRTSELNSFRASSRPYYL-QN 121
               I G ++VGV       R  ++ E I S     +  P +  S +  F  S + Y L + 
Sbjct:   248 KIIAGNVMVGVSRCT--DRSVIDKENIGSVPNAEIGDPPTSPSAIRPF--SQQSYKLARK 303

Query:   122 GHTSTGQSGGAIASPAKSMVSKIMDLMFG 150
              +  + Q    +   +  ++ K MDL+FG
Sbjct:   304 DNIISPQKD--VPQKSSGLMDKAMDLIFG 330

GO:0031965 "nuclear membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0006999 "nuclear pore organization" evidence=ISS

GO:0044613 "nuclear pore central transport channel" evidence=ISS

GO:0005487 "nucleocytoplasmic transporter activity" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

POMBASE|SPAC19E9.01c nup40 "nucleoporin Nup40" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 114 (45.2 bits), Expect = 4.0e-06, P = 4.0e-06
 Identities = 35/115 (30%), Positives = 50/115 (43%)

Query:     5 SSFLIVPFRFPPADTNLVLREFEKCGVILKH----------VP--GPRDANWMHILYQNR 52
             S+  ++ F FPP  TN V+ EF + G I+             P  GP   NW+ + Y   
Sbjct:   168 SNTSVIVFGFPPELTNQVIAEFSRFGTIISENSLTASSAGFTPSKGPISGNWLQLTYAEP 227

Query:    53 SDAQKALSKNGMQINGVLIVGV--KPLDPMQRQALNERINSQGFMTLPPPSSRTS 105
             S A KA+  NGM IN   +VG    P +  +      R +++        SS TS
Sbjct:   228 SSAAKAVLSNGMLINDSFMVGCIYSPAEAKEHVPKTLRNSNKDLEMTDASSSETS 282


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      151       151   0.00097  104 3  11 22  0.47    31
                                                     30  0.40    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  132 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.71u 0.09s 16.80t   Elapsed:  00:00:02
  Total cpu time:  16.71u 0.09s 16.80t   Elapsed:  00:00:02
  Start:  Fri May 10 06:04:34 2013   End:  Fri May 10 06:04:36 2013

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005643 "nuclear pore" evidence=IDA

GO:0006407 "rRNA export from nucleus" evidence=ISO

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0051028 "mRNA transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00011347	hypothetical protein (330 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0010063701	hypothetical protein (214 aa)						•			0.800
	grail3.0010063601	hypothetical protein (291 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	151
pfam05172	87	pfam05172, Nup35_RRM, Nup53/35/40-type RNA recogni	2e-34
cd12441	73	cd12441, RRM_Nup53_like, RNA recognition motif in	5e-33
cd12722	74	cd12722, RRM_Nup53, RNA recognition motif in nucle	9e-18
cd12721	86	cd12721, RRM_Nup53p_fungi, RNA recognition motif i	8e-12
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	0.001

>gnl|CDD|113924 pfam05172, Nup35_RRM, Nup53/35/40-type RNA recognition motif

 Score =  115 bits (289), Expect = 2e-34
 Identities = 41/82 (50%), Positives = 53/82 (64%)

Query: 5  SSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGM 64
          S   +  F FPP+  N VL  F + G ILKHV GP + NWMH+ YQ+ S A+KALSKNG 
Sbjct: 6  SDTWVTVFGFPPSIANYVLLHFSRFGEILKHVQGPTNGNWMHLTYQSPSSARKALSKNGT 65

Query: 65 QINGVLIVGVKPLDPMQRQALN 86
           ING ++VGVK    + +Q +N
Sbjct: 66 IINGSVMVGVKYCPAIDKQVIN 87

Members of this family belong to the nucleor pore complex, NPC, the only gateway between the nucleus and the cytoplasm. The NPC consists of several subcomplexes each one of which is made up of multiple copies of several individual Nup, Nic or Sec protein subunits. In yeast, this Nup or nucleoporin subunit is numbered Nup53, Nup40 in Schizo. pombe and in vertebrates as Nup35. This subunit forms part of the inner ring within the membrane and interacts directly with Nup-Ndc1, considered to be an anchor for the NPC in the pore membrane. This region of the Nup is the RNA-recognition region. Length = 87

>gnl|CDD|240887 cd12441, RRM_Nup53_like, RNA recognition motif in nucleoporin Nup53 and similar proteins

 Score =  111 bits (279), Expect = 5e-33
 Identities = 38/68 (55%), Positives = 48/68 (70%), Gaps = 1/68 (1%)

Query: 12 FRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLI 71
          F FPP+  NLVLREF  CG IL+    P  ANW+H+ Y +R +A++ALSKNG  ING ++
Sbjct: 7  FGFPPSALNLVLREFSSCGTILEVRYPPG-ANWIHLKYSSRLEAERALSKNGTIINGGVM 65

Query: 72 VGVKPLDP 79
          VGVKP D 
Sbjct: 66 VGVKPCDD 73

This subfamily corresponds to the RRM domain of nucleoporin Nup53, also termed mitotic phosphoprotein 44 (MP-44), or nuclear pore complex protein Nup53, required for normal cell growth and nuclear morphology in vertebrate. It tightly associates with the nuclear envelope membrane and the nuclear lamina where it interacts with lamin B. It may also interact with a group of nucleoporins including Nup93, Nup155, and Nup205 and play a role in the association of the mitotic checkpoint protein Mad1 with the nuclear pore complex (NPC). The family also includes Saccharomyces cerevisiae Nup53p, an ortholog of vertebrate nucleoporin Nup53. A unique property of yeast Nup53p is that it contains an additional Kap121p-binding domain and interacts specifically with the karyopherin Kap121p, which is involved in the assembly of Nup53p into NPCs. Both, vertebrate Nup35 and yeast Nup53p, contain an atypical RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a C-terminal amphipathic alpha-helix and several FG repeats. This family corresponds to the RRM domain which lacks the conserved residues that typically bind RNA in canonical RRM domains. Length = 73

>gnl|CDD|241166 cd12722, RRM_Nup53, RNA recognition motif in nucleoporin Nup53

 Score = 72.1 bits (177), Expect = 9e-18
 Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 12 FRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLI 71
          F FPPA  + +L++F + G ILKHV    + NWMHI YQ++  A+KALSKNG      ++
Sbjct: 8  FGFPPAAASYILQQFAQYGNILKHVMSN-NGNWMHIQYQSKLQAKKALSKNGKIFGENIM 66

Query: 72 VGVKP 76
          +GVKP
Sbjct: 67 IGVKP 71

This subgroup corresponds to the RRM of nucleoporin Nup53, also termed mitotic phosphoprotein 44 (MP-44), or nuclear pore complex protein Nup53, required for normal cell growth and nuclear morphology in vertebrate. It tightly associates with the nuclear envelope membrane and the nuclear lamina where it interacts with lamin B. It may also interact with a group of nucleoporins including Nup93, Nup155, and Nup205 and play a role in the association of the mitotic checkpoint protein Mad1 with the nuclear pore complex (NPC). Nup35 contains an atypical RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a C-terminal amphipathic alpha-helix and several FG repeats. This RRM lacks the conserved residues that typically bind RNA in canonical RRM domains. Length = 74

>gnl|CDD|241165 cd12721, RRM_Nup53p_fungi, RNA recognition motif in yeast nucleoporin Nup53p and similar proteins

 Score = 57.4 bits (139), Expect = 8e-12
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 12/83 (14%)

Query: 9  IVPFRFPPADTNLVLREFEKCGVILKHVPGPRD------------ANWMHILYQNRSDAQ 56
          ++ F FPP+ TN V+  F   G I++    PR             +NW+ + Y+    A 
Sbjct: 4  VIVFGFPPSLTNAVIEHFSGFGEIIEDFEVPRSSSGLQKPPIFEGSNWVKLTYKEPLSAA 63

Query: 57 KALSKNGMQINGVLIVGVKPLDP 79
          +AL +NG  +NG  ++G K  D 
Sbjct: 64 RALRENGEVLNGQCMIGCKWYDD 86

This subgroup corresponds to the RRM of Saccharomyces cerevisiae Nup53p, the ortholog of vertebrate nucleoporin Nup53. A unique property of yeast Nup53p is that it contains an additional Kap121p-binding domain and interacts specifically with the karyopherin Kap121p, which is involved in the assembly of Nup53p into NPCs. Like vertebrate Nup35, yeast Nup53p contains an atypical RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a C-terminal amphipathic alpha-helix and several FG repeats. The RRM domain lacks the conserved residues that typically bind RNA in canonical RRM domains. Length = 86

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 14 FPPADTNLVLRE-FEKCG----VILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQIN 67
           PP  T   LRE F K G    V +      +   +  + +++  DA+KAL   NG +++
Sbjct: 6  LPPDTTEEDLRELFSKFGEIESVRIVRDKDGKSKGFAFVEFESPEDAEKALEALNGKELD 65

Query: 68 G 68
          G
Sbjct: 66 G 66

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
KOG4285	350	consensus Mitotic phosphoprotein [Cell cycle contr	100.0
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	100.0
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	99.71
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	98.37
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	98.16
PLN03120	260	nucleic acid binding protein; Provisional	98.0
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	97.99
smart00362	72	RRM_2 RNA recognition motif.	97.98
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	97.77
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	97.67
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	97.66
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	97.56
smart00360	71	RRM RNA recognition motif.	97.53
PLN03121	243	nucleic acid binding protein; Provisional	97.44
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	97.06
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	97.06
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	97.03
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	97.0
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	96.98
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	96.97
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	96.95
smart00361	70	RRM_1 RNA recognition motif.	96.88
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	96.75
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	96.7
KOG0149	247	consensus Predicted RNA-binding protein SEB4 (RRM	96.63
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	96.46
KOG0148	321	consensus Apoptosis-promoting RNA-binding protein	96.45
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	96.39
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	96.33
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	96.03
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	95.99
KOG0121	153	consensus Nuclear cap-binding protein complex, sub	95.62
COG0724	306	RNA-binding proteins (RRM domain) [General functio	95.09
COG5175	480	MOT2 Transcriptional repressor [Transcription]	94.95
KOG0117	506	consensus Heterogeneous nuclear ribonucleoprotein	94.8
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	94.62
KOG0125	376	consensus Ataxin 2-binding protein (RRM superfamil	94.26
KOG4207	256	consensus Predicted splicing factor, SR protein su	92.63
KOG4660	549	consensus Protein Mei2, essential for commitment t	91.58
KOG0153	377	consensus Predicted RNA-binding protein (RRM super	90.43
PF10309	62	DUF2414: Protein of unknown function (DUF2414); In	90.36
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	90.1
KOG0147	549	consensus Transcriptional coactivator CAPER (RRM s	89.35
KOG0114	124	consensus Predicted RNA-binding protein (RRM super	88.7
KOG0123	369	consensus Polyadenylate-binding protein (RRM super	88.56
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	88.1
KOG0120	500	consensus Splicing factor U2AF, large subunit (RRM	86.46
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	85.7
KOG0122	270	consensus Translation initiation factor 3, subunit	84.41
PLN03213	759	repressor of silencing 3; Provisional	83.59
KOG0123	369	consensus Polyadenylate-binding protein (RRM super	83.25
KOG0130	170	consensus RNA-binding protein RBM8/Tsunagi (RRM su	83.08
KOG0147	549	consensus Transcriptional coactivator CAPER (RRM s	82.94
KOG4206	221	consensus Spliceosomal protein snRNP-U1A/U2B [RNA	82.72
KOG0146	371	consensus RNA-binding protein ETR-3 (RRM superfami	81.99
KOG0127	678	consensus Nucleolar protein fibrillarin NOP77 (RRM	80.45

>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.2e-41  Score=283.09  Aligned_cols=139  Identities=40%  Similarity=0.665  Sum_probs=110.3

Q ss_pred             CCcEEEEecCCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECChH-HHH
Q 031896            5 SSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDPM-QRQ   83 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~~-~~~   83 (151)
                      +++|||||||||.+.+.||++|++||+||+|+. ++++|||||+|+++.+|+|||+|||++|+|++|||||||.+. +.+
T Consensus       196 ~D~WVTVfGFppg~~s~vL~~F~~cG~Vvkhv~-~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDksvi~  274 (350)
T KOG4285|consen  196 ADTWVTVFGFPPGQVSIVLNLFSRCGEVVKHVT-PSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKSVIN  274 (350)
T ss_pred             ccceEEEeccCccchhHHHHHHHhhCeeeeeec-CCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHHHhc
Confidence            489999999999999999999999999999998 489999999999999999999999999999999999998553 333


Q ss_pred             HHhh--------hhccCCcccCCCCCCCCccccccCCCCCC----cccC--CCCCCCCCCCCCccCCCchhHHHHhHhhh
Q 031896           84 ALNE--------RINSQGFMTLPPPSSRTSELNSFRASSRP----YYLQ--NGHTSTGQSGGAIASPAKSMVSKIMDLMF  149 (151)
Q Consensus        84 ~l~~--------~~~~~~~~~~~~p~~~~~~~~~~~~~~rp----~y~~--~~~~~~~~~~~~~~~P~ks~vsk~meyvF  149 (151)
                      +.+.        .....+.+.+++|+       ..+..+||    .|++  +++.+.++..++.++|++|+|+|+|||||
T Consensus       275 ~sn~~~~~~~s~~a~np~a~~l~ppt-------s~~st~rpss~~~y~~a~kas~s~~p~~~dq~tp~gslvskamdlmf  347 (350)
T KOG4285|consen  275 GSNSGIVARSSAAAANPSASMLNPPT-------SENSTLRPSSVFDYNNALKASVSMRPLAADQRTPSGSLVSKAMDLMF  347 (350)
T ss_pred             ccccccccchhhhhcCCCcccCCCCC-------CCCcccCccchhhHHhhccccccCccccccccCCCCchHHHHHhhhh
Confidence            3331        11112333333332       23444555    4553  34446788889999999999999999999


Q ss_pred             C-C
Q 031896          150 G-I  151 (151)
Q Consensus       150 G-~  151 (151)
                      | |
T Consensus       348 g~W  350 (350)
T KOG4285|consen  348 GNW  350 (350)
T ss_pred             cCC
Confidence            9 7

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=100.00  E-value=2.7e-36  Score=220.56  Aligned_cols=83  Identities=49%  Similarity=0.824  Sum_probs=71.3

Q ss_pred             cCCcEEEEecCCCCCHHHHHHHHhhcCcEEeec------------cCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEE
Q 031896            4 ISSFLIVPFRFPPADTNLVLREFEKCGVILKHV------------PGPRDANWMHILYQNRSDAQKALSKNGMQINGVLI   71 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~~~Vl~~F~~~G~I~~~~------------~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~m   71 (151)
                      .+++||||||||++.++.||+||++||+|++++            +.|+++|||||+|+|+.+|+|||++||++|+|++|
T Consensus         4 ~~~~wVtVFGfp~~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m   83 (100)
T PF05172_consen    4 DSETWVTVFGFPPSASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM   83 (100)
T ss_dssp             GGCCEEEEE---GGGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred             cCCeEEEEEccCHHHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence            468999999999999999999999999999997            56789999999999999999999999999999999


Q ss_pred             EEEEECChHHHHHHh
Q 031896           72 VGVKPLDPMQRQALN   86 (151)
Q Consensus        72 IGVkp~d~~~~~~l~   86 (151)
                      |||+|||+.+++.++
T Consensus        84 vGV~~~~~~~~~~~~   98 (100)
T PF05172_consen   84 VGVKPCDPADEQLLN   98 (100)
T ss_dssp             EEEEE-HHHHCCCH-
T ss_pred             EEEEEcHHhHHHHhc
Confidence            999999998877664

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=99.71  E-value=1.4e-17  Score=108.71  Aligned_cols=53  Identities=40%  Similarity=0.611  Sum_probs=50.2

Q ss_pred             CcEEEEecCCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHH
Q 031896            6 SFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKAL   59 (151)
Q Consensus         6 ~~wVtVFGfp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL   59 (151)
                      .+||+|+||+++..+.||++|.+||+|+++.. +...|||+|+|.++.+|++||
T Consensus         1 ~~wI~V~Gf~~~~~~~vl~~F~~fGeI~~~~~-~~~~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen    1 STWISVSGFPPDLAEEVLEHFASFGEIVDIYV-PESTNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             CcEEEEEeECchHHHHHHHHHHhcCCEEEEEc-CCCCcEEEEEECCHHHHHhhC
Confidence            48999999999999999999999999999986 457999999999999999997

>PF13893 RRM_5: RNA recognition motif

Probab=98.37  E-value=3e-06  Score=54.02  Aligned_cols=53  Identities=28%  Similarity=0.360  Sum_probs=43.8

Q ss_pred             HHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEE
Q 031896           22 VLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVK   75 (151)
Q Consensus        22 Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVk   75 (151)
                      +.++|++||+|.++...+...+...|+|++..+|++|++ .||..+.|.. |-|.
T Consensus         1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~-l~V~   54 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRP-LKVS   54 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEE-EEEE
T ss_pred             ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcE-EEEE
Confidence            468999999999988644445999999999999999997 6999998865 6554

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>PF00076 RRM_1: RNA recognition motif

Probab=98.16  E-value=8.1e-06  Score=52.48  Aligned_cols=62  Identities=24%  Similarity=0.318  Sum_probs=51.0

Q ss_pred             EEEecCCCCC-HHHHHHHHhhcCcEEeeccCC----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeE
Q 031896            9 IVPFRFPPAD-TNLVLREFEKCGVILKHVPGP----RDANWMHILYQNRSDAQKALS-KNGMQINGVL   70 (151)
Q Consensus         9 VtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~   70 (151)
                      |.|-++|++. ...+.+.|++||.|......+    ....|..|+|.++.+|++||. .||..++|..
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~   68 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRK   68 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccC
Confidence            5688999984 457888899999998764322    246899999999999999999 8999998854

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>PLN03120 nucleic acid binding protein; Provisional

Probab=98.00  E-value=5.4e-05  Score=63.94  Aligned_cols=74  Identities=15%  Similarity=0.082  Sum_probs=61.7

Q ss_pred             CcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECChH
Q 031896            6 SFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus         6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~~   80 (151)
                      .+-|.|=|.|+..+ ..|.++|+.||+|.+++...+  ...+-.|+|.++.+|+.||..||..|.|.. |-|.++++.
T Consensus         4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~-V~Vt~a~~~   80 (260)
T PLN03120          4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQS-VTITPAEDY   80 (260)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCce-EEEEeccCC
Confidence            56789999999854 577778999999999875222  357999999999999999999999998877 899997653

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=97.99  E-value=0.0001  Score=46.35  Aligned_cols=62  Identities=21%  Similarity=0.300  Sum_probs=49.6

Q ss_pred             EEEecCCCCC-HHHHHHHHhhcCcEEeeccCCC----CCCeEEEEcCCHHHHHHHHHh-CCceecCeE
Q 031896            9 IVPFRFPPAD-TNLVLREFEKCGVILKHVPGPR----DANWMHILYQNRSDAQKALSK-NGMQINGVL   70 (151)
Q Consensus         9 VtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~----~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~   70 (151)
                      |.|-|+|+.. .+.|.+.|+.+|+|.+......    ......|+|.+..+|+.|+.+ +|..++|.-
T Consensus         2 i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~   69 (74)
T cd00590           2 LFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRP   69 (74)
T ss_pred             EEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence            6788999974 5588899999999987654322    267999999999999999986 666677754

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>smart00362 RRM_2 RNA recognition motif

Probab=97.98  E-value=9.3e-05  Score=46.25  Aligned_cols=62  Identities=21%  Similarity=0.323  Sum_probs=49.2

Q ss_pred             EEEecCCCC-CHHHHHHHHhhcCcEEeeccCCC---CCCeEEEEcCCHHHHHHHHHh-CCceecCeE
Q 031896            9 IVPFRFPPA-DTNLVLREFEKCGVILKHVPGPR---DANWMHILYQNRSDAQKALSK-NGMQINGVL   70 (151)
Q Consensus         9 VtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~---~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~   70 (151)
                      |.|-|.|+. ....|.+.|+++|.|.+......   ..++..|+|.++.+|++|++. ||..++|.-
T Consensus         2 v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~   68 (72)
T smart00362        2 LFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRP   68 (72)
T ss_pred             EEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEE
Confidence            678899887 44588899999999988754222   248999999999999999986 778887744

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=97.77  E-value=4.1e-05  Score=59.72  Aligned_cols=62  Identities=23%  Similarity=0.363  Sum_probs=48.9

Q ss_pred             CCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896           14 FPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus        14 fp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~   79 (151)
                      |++.....+|+.|.+||+++-.+.   .+.=|-|+|.+-.+|.+||++||..++|.. |.|++-.|
T Consensus        45 Fdd~l~~~ll~~~~~~GevvLvRf---v~~~mwVTF~dg~sALaals~dg~~v~g~~-l~i~LKtp  106 (146)
T PF08952_consen   45 FDDNLMDELLQKFAQYGEVVLVRF---VGDTMWVTFRDGQSALAALSLDGIQVNGRT-LKIRLKTP  106 (146)
T ss_dssp             --HHHHHHHHHHHHCCS-ECEEEE---ETTCEEEEESSCHHHHHHHHGCCSEETTEE-EEEEE---
T ss_pred             CCHHHHHHHHHHHHhCCceEEEEE---eCCeEEEEECccHHHHHHHccCCcEECCEE-EEEEeCCc
Confidence            666678899999999999998875   234677899999999999999999998866 99999654

; PDB: 1UFW_A 2DNR_A.

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=97.67  E-value=0.00053  Score=52.53  Aligned_cols=73  Identities=16%  Similarity=0.213  Sum_probs=58.7

Q ss_pred             CcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            6 SFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      .+-|.|-++|...+ ..|.+.|++||+|.+.....     .....-.|+|.++.+|++||. .||..|+|.. |=|.+..
T Consensus        34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~-l~V~~a~  112 (144)
T PLN03134         34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRH-IRVNPAN  112 (144)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEeCC
Confidence            45688999999855 57888999999999875411     235799999999999999997 5999998865 7787765


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus       113 ~  113 (144)
T PLN03134        113 D  113 (144)
T ss_pred             c
Confidence            4

>PF14259 RRM_6: RNA recognition motif (a

Probab=97.66  E-value=0.00016  Score=47.18  Aligned_cols=62  Identities=19%  Similarity=0.267  Sum_probs=48.3

Q ss_pred             EEEecCCCCCH-HHHHHHHhhcCcEEeeccCCC----CCCeEEEEcCCHHHHHHHHHhCC-ceecCeE
Q 031896            9 IVPFRFPPADT-NLVLREFEKCGVILKHVPGPR----DANWMHILYQNRSDAQKALSKNG-MQINGVL   70 (151)
Q Consensus         9 VtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~----~~NWi~i~y~~~~~A~rAL~~nG-~ii~g~~   70 (151)
                      |.|-|.|++.. +.|.+.|+.+|.|.+......    ..+-..|+|.++.+|++||..++ ..+.|.-
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~   68 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRK   68 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence            57889999844 567778899999987764222    35889999999999999999976 8887753

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=97.56  E-value=0.00064  Score=57.01  Aligned_cols=72  Identities=15%  Similarity=0.222  Sum_probs=58.1

Q ss_pred             cEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            7 FLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      .-|.|...|++ .-+.+.+.|++||.|.+.+...     .....-.|.|.+..+|.+|+. .||..|+|.. |-|...++
T Consensus       270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~-i~V~~~~~  348 (352)
T TIGR01661       270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRV-LQVSFKTN  348 (352)
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeE-EEEEEccC
Confidence            36999999998 4567888999999999875311     124688999999999999997 6999998866 88877654

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>smart00360 RRM RNA recognition motif

Probab=97.53  E-value=0.00056  Score=42.35  Aligned_cols=59  Identities=24%  Similarity=0.342  Sum_probs=44.3

Q ss_pred             ecCCCC-CHHHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHHh-CCceecCeE
Q 031896           12 FRFPPA-DTNLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALSK-NGMQINGVL   70 (151)
Q Consensus        12 FGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~   70 (151)
                      -|+|.. ..+.|.+.|++||.|.+......     ...+..|+|.+..+|.+|+.. ||..++|.-
T Consensus         2 ~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~   67 (71)
T smart00360        2 GNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRP   67 (71)
T ss_pred             CCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcE
Confidence            356665 44578899999999987754221     246999999999999999965 667777654

>PLN03121 nucleic acid binding protein; Provisional

Probab=97.44  E-value=0.0012  Score=55.35  Aligned_cols=74  Identities=16%  Similarity=0.135  Sum_probs=60.3

Q ss_pred             CCcEEEEecCCCCCHH-HHHHHHhhcCcEEeeccCCC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPADTN-LVLREFEKCGVILKHVPGPR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~   79 (151)
                      .++-|.|-+.++..+. .|-++|+.||+|.+++...+  .+..-+|+|.++.+|+.||..||..|.|.- |-|.|..+
T Consensus         4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~-I~It~~~~   80 (243)
T PLN03121          4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQR-VCITRWGQ   80 (243)
T ss_pred             CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCce-EEEEeCcc
Confidence            4677899999998665 56667799999998875322  235899999999999999999999998866 88888754

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=97.06  E-value=0.0039  Score=56.21  Aligned_cols=73  Identities=15%  Similarity=0.186  Sum_probs=57.1

Q ss_pred             CcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC----CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECCh
Q 031896            6 SFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP----RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p----~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~   79 (151)
                      .+-|.|-++++... +.+.++|++||+|.+.....    ....|..|.|++..+|.+||.. ||..++|.- |-|.....
T Consensus       285 ~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~-l~V~~a~~  363 (562)
T TIGR01628       285 GVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKP-LYVALAQR  363 (562)
T ss_pred             CCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCce-eEEEeccC
Confidence            34578889998844 56778889999998765311    2347999999999999999974 999998865 88888654

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=97.06  E-value=0.0025  Score=55.59  Aligned_cols=60  Identities=17%  Similarity=0.166  Sum_probs=49.9

Q ss_pred             HHHHHHHHhhcCcEEeeccC-CCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECCh
Q 031896           19 TNLVLREFEKCGVILKHVPG-PRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDP   79 (151)
Q Consensus        19 ~~~Vl~~F~~~G~I~~~~~~-p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~   79 (151)
                      ...|.++|++||+|+++... +.....+.|+|.+..+|++|++. ||+.++|.. |-|..+..
T Consensus       386 ~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~-i~~~~~~~  447 (457)
T TIGR01622       386 LDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKM-ITAAFVVN  447 (457)
T ss_pred             HHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeE-EEEEEEcH
Confidence            35799999999999987642 44567899999999999999987 999999966 77777655

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=97.03  E-value=0.0053  Score=54.95  Aligned_cols=72  Identities=17%  Similarity=0.131  Sum_probs=59.1

Q ss_pred             CcEEEEecCCCC--CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            6 SFLIVPFRFPPA--DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         6 ~~wVtVFGfp~~--~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      .+-|.|.+++++  ..+.+.+.|++||+|+++..-.+...+-.|+|.+..+|++||. .||..|.|.- |-|....
T Consensus       275 ~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~-l~v~~s~  349 (481)
T TIGR01649       275 GSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKP-LRVCPSK  349 (481)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCce-EEEEEcc
Confidence            457899999973  5678999999999999886433445799999999999999997 6999998855 7777643

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=97.00  E-value=0.0041  Score=54.08  Aligned_cols=75  Identities=19%  Similarity=0.185  Sum_probs=57.5

Q ss_pred             CcEEEEecCCCCCHH-HHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHHh-CCceecC-eEEEEEEEC
Q 031896            6 SFLIVPFRFPPADTN-LVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALSK-NGMQING-VLIVGVKPL   77 (151)
Q Consensus         6 ~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~~-nG~ii~g-~~mIGVkp~   77 (151)
                      .+-|.|-++|...++ .|.++|++||+|+++....   ++  ..+..|+|+++.+|++||.. ||..+.| ..-|-|+..
T Consensus       193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a  272 (346)
T TIGR01659       193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA  272 (346)
T ss_pred             cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence            456889999998655 6777899999998765311   11  26999999999999999995 9988865 355788877


Q ss_pred             ChH
Q 031896           78 DPM   80 (151)
Q Consensus        78 d~~   80 (151)
                      +..
T Consensus       273 ~~~  275 (346)
T TIGR01659       273 EEH  275 (346)
T ss_pred             Ccc
Confidence            653

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=96.98  E-value=0.0061  Score=51.11  Aligned_cols=69  Identities=17%  Similarity=0.219  Sum_probs=53.8

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC--C-C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEE
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG--P-R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVK   75 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~--p-~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVk   75 (151)
                      .+-|.|=+.|+. ..+.+.+.|++||+|.++..-  + +  ...+-.|+|.++.+|++||. .||..|.|.. |=|.
T Consensus         3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~-i~v~   78 (352)
T TIGR01661         3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKT-IKVS   78 (352)
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCee-EEEE
Confidence            456778899887 566888999999999886531  1 1  23699999999999999996 6999998755 5553

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=96.97  E-value=0.0069  Score=52.84  Aligned_cols=70  Identities=14%  Similarity=0.106  Sum_probs=55.7

Q ss_pred             CcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896            6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP   76 (151)
Q Consensus         6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp   76 (151)
                      .+-|.|-+.|... ...|.+.|++||.|.++....     .....-.|.|.+..+|++||..||..+.|.- |-|++
T Consensus        89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~-i~v~~  164 (457)
T TIGR01622        89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRP-IIVQS  164 (457)
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCee-eEEee
Confidence            4568899999884 447888999999998876421     2346899999999999999999999998865 44444

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=96.95  E-value=0.0049  Score=53.65  Aligned_cols=71  Identities=17%  Similarity=0.193  Sum_probs=53.4

Q ss_pred             cCCcEEEEecCCCCCHH-HHHHHHhhcCcEEeeccC---CCC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEE
Q 031896            4 ISSFLIVPFRFPPADTN-LVLREFEKCGVILKHVPG---PRD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVK   75 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~---p~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVk   75 (151)
                      .+.+.|.|-++|++.++ .|.+.|++||.|+++...   .++  .....|+|.++.+|++||. .||..+.+.- |=|.
T Consensus       105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~-i~V~  182 (346)
T TIGR01659       105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKR-LKVS  182 (346)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCce-eeee
Confidence            35678999999998555 666789999999877531   111  2579999999999999996 6998887654 4443

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>smart00361 RRM_1 RNA recognition motif

Probab=96.88  E-value=0.0058  Score=40.70  Aligned_cols=50  Identities=24%  Similarity=0.228  Sum_probs=38.6

Q ss_pred             HHHHHHh----hcCcEEeec--cC------CCCCCeEEEEcCCHHHHHHHHHh-CCceecCeE
Q 031896           21 LVLREFE----KCGVILKHV--PG------PRDANWMHILYQNRSDAQKALSK-NGMQINGVL   70 (151)
Q Consensus        21 ~Vl~~F~----~~G~I~~~~--~~------p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~   70 (151)
                      .+.++|+    +||+|.+..  ..      .....+..|+|.+..+|++|++. ||..+.|..
T Consensus         4 ~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~   66 (70)
T smart00361        4 DFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT   66 (70)
T ss_pred             hHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            4556666    899988763  11      12357899999999999999995 999998866

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=96.75  E-value=0.011  Score=54.88  Aligned_cols=70  Identities=19%  Similarity=0.359  Sum_probs=57.6

Q ss_pred             cEEEEecCCCCCH-HHHHHHHhhc--CcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECChH
Q 031896            7 FLIVPFRFPPADT-NLVLREFEKC--GVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus         7 ~wVtVFGfp~~~~-~~Vl~~F~~~--G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~~   80 (151)
                      .-|.|-+++.+.. +.|.++|++|  |+|.++..   -..+-.|.|.++.+|++||. .||..|.|.. |=|.+..+.
T Consensus       234 k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~---~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~-I~V~~Akp~  307 (578)
T TIGR01648       234 KILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK---IRDYAFVHFEDREDAVKAMDELNGKELEGSE-IEVTLAKPV  307 (578)
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe---ecCeEEEEeCCHHHHHHHHHHhCCCEECCEE-EEEEEccCC
Confidence            4578889998855 4577789999  99998864   24689999999999999997 6999998866 888876553

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=96.70  E-value=0.0078  Score=53.13  Aligned_cols=59  Identities=25%  Similarity=0.313  Sum_probs=47.1

Q ss_pred             HHHHHHHhhcCcEEeeccC-C-------CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECCh
Q 031896           20 NLVLREFEKCGVILKHVPG-P-------RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDP   79 (151)
Q Consensus        20 ~~Vl~~F~~~G~I~~~~~~-p-------~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~   79 (151)
                      +.|.++|++||.|+++... +       .+...+.|+|.+..+|++|+.. ||..|+|.. |=|..++.
T Consensus       434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~-v~~~~~~~  501 (509)
T TIGR01642       434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRV-VVAAFYGE  501 (509)
T ss_pred             HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeE-EEEEEeCH
Confidence            4678999999999987531 1       1246889999999999999985 999999977 66666665

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]

Probab=96.63  E-value=0.0053  Score=51.49  Aligned_cols=64  Identities=19%  Similarity=0.191  Sum_probs=50.6

Q ss_pred             cEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC----C-CCCCeEEEEcCCHHHHHHHHHhCCceecCeE
Q 031896            7 FLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG----P-RDANWMHILYQNRSDAQKALSKNGMQINGVL   70 (151)
Q Consensus         7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~----p-~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~   70 (151)
                      +-|.|=|.+=+ ..+.+.++|++||+|||-+..    . .-..+--|+|.+..+|.||++----+|+|..
T Consensus        13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~   82 (247)
T KOG0149|consen   13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRK   82 (247)
T ss_pred             EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccc
Confidence            45667788866 677899999999999987531    1 2357889999999999999998777887754

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=96.46  E-value=0.017  Score=54.05  Aligned_cols=70  Identities=20%  Similarity=0.198  Sum_probs=55.7

Q ss_pred             cEEEEecCCCCCHH-HHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896            7 FLIVPFRFPPADTN-LVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus         7 ~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      +-|.|.|.+++..+ .+.++|++||.|++.....     ....+-.|.|.+..+|.+||.. ||..|+|.. |-|..+
T Consensus       205 ~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~-LrV~kA  281 (612)
T TIGR01645       205 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQY-LRVGKC  281 (612)
T ss_pred             ceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeE-EEEEec
Confidence            56889999999655 6667899999999875321     1246899999999999999965 999998876 777664

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=96.45  E-value=0.014  Score=50.12  Aligned_cols=72  Identities=18%  Similarity=0.179  Sum_probs=60.1

Q ss_pred             cCCcEEEEecCCCCCHH-HHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896            4 ISSFLIVPFRFPPADTN-LVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      .+.+.|-|=|+++..++ ++.+.|+.||.|.|++..+ ...+--|+|+++++|-+|+-. ||+-|+|.+ |-|.|-
T Consensus       162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk-~qGYaFVrF~tkEaAahAIv~mNntei~G~~-VkCsWG  235 (321)
T KOG0148|consen  162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK-DQGYAFVRFETKEAAAHAIVQMNNTEIGGQL-VRCSWG  235 (321)
T ss_pred             CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec-ccceEEEEecchhhHHHHHHHhcCceeCceE-EEEecc
Confidence            46678888899996555 5556799999999998644 667899999999999999755 999999988 999883

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=96.39  E-value=0.013  Score=54.76  Aligned_cols=65  Identities=18%  Similarity=0.165  Sum_probs=52.5

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeE
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVL   70 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~   70 (151)
                      .+-|.|-++|.. .-+.+.+.|++||.|.++....     ....+-.|.|.++.+|++|+. .||..|.|..
T Consensus       107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~  178 (612)
T TIGR01645       107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRN  178 (612)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecce
Confidence            356888899987 4557788899999998876311     235799999999999999996 6999998865

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=96.33  E-value=0.024  Score=51.22  Aligned_cols=69  Identities=17%  Similarity=0.170  Sum_probs=51.8

Q ss_pred             EEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            8 LIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         8 wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      .|.|=+.|++ ..+.|.+.|++||.|+++....+     ....-.|.|.++.+|++||. .|+..|.|.- |=|.+.
T Consensus         2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~-i~i~~s   77 (562)
T TIGR01628         2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKP-IRIMWS   77 (562)
T ss_pred             eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCee-EEeecc
Confidence            3667788876 45577788999999998764211     22489999999999999995 5888888765 555553

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=96.03  E-value=0.05  Score=48.74  Aligned_cols=62  Identities=8%  Similarity=0.049  Sum_probs=50.4

Q ss_pred             cEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh---CCceecCe
Q 031896            7 FLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK---NGMQINGV   69 (151)
Q Consensus         7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~---nG~ii~g~   69 (151)
                      .-|.|=+.|.+ ..+.+.+.|++||.|.++... ...+.-.|.|.+..+|++|+..   |+..|.|.
T Consensus         3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~-~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~   68 (481)
T TIGR01649         3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMML-PGKRQALVEFEDEESAKACVNFATSVPIYIRGQ   68 (481)
T ss_pred             cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEE-CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCe
Confidence            45788889998 455777789999999988653 3568999999999999999984   78777764

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=95.99  E-value=0.059  Score=47.59  Aligned_cols=71  Identities=14%  Similarity=0.033  Sum_probs=55.1

Q ss_pred             CcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC--C---CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG--P---RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~--p---~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      .+-|.|=++|... .+.|.+.|++||.|......  +   ...++..|.|.+..+|.+|+. .||..|.|.. |-|...
T Consensus       295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~-l~v~~a  372 (509)
T TIGR01642       295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNK-LHVQRA  372 (509)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeE-EEEEEC
Confidence            3568888999874 45677889999999875421  1   135799999999999999996 6999998876 566664

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]

Probab=95.62  E-value=0.023  Score=44.25  Aligned_cols=58  Identities=22%  Similarity=0.420  Sum_probs=48.1

Q ss_pred             CHHHHHHHHhhcCcEEeeccC-----CCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEE
Q 031896           18 DTNLVLREFEKCGVILKHVPG-----PRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKP   76 (151)
Q Consensus        18 ~~~~Vl~~F~~~G~I~~~~~~-----p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp   76 (151)
                      .-++|.+.|++||+|-.+.++     .+...+.-|.|-++.+|..||+. ||..+...+ |-+-+
T Consensus        49 tEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~-ir~D~  112 (153)
T KOG0121|consen   49 TEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRP-IRIDW  112 (153)
T ss_pred             cHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccc-eeeec
Confidence            456899999999999988654     35678999999999999999998 999998766 54433

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=95.09  E-value=0.24  Score=37.50  Aligned_cols=71  Identities=15%  Similarity=0.237  Sum_probs=55.8

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC-----CCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG-----PRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~-----p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      .+-|.|-+.|.. .-+.+.++|.+||.|......     ..-..+-.|.|.++.+|++|+.. ||..+.|.. |-|.+.
T Consensus       115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~-~~v~~~  192 (306)
T COG0724         115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRP-LRVQKA  192 (306)
T ss_pred             CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCce-eEeecc
Confidence            367888899987 455888999999999665421     13458999999999999999998 568998866 666664

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=94.95  E-value=0.065  Score=47.61  Aligned_cols=69  Identities=23%  Similarity=0.406  Sum_probs=52.8

Q ss_pred             cccCCcEEEEecCCCCCHHH----HH---HHHhhcCcEEeeccC---C----CCC-CeEEEEcCCHHHHHHHHHh-CCce
Q 031896            2 TLISSFLIVPFRFPPADTNL----VL---REFEKCGVILKHVPG---P----RDA-NWMHILYQNRSDAQKALSK-NGMQ   65 (151)
Q Consensus         2 ~~~~~~wVtVFGfp~~~~~~----Vl---~~F~~~G~I~~~~~~---p----~~~-NWi~i~y~~~~~A~rAL~~-nG~i   65 (151)
                      .|+-..-|-|.|.||..++.    ||   ++|.+||.|.++...   +    +.+ -=++|+|++..+|.||++. +|..
T Consensus       110 RVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~  189 (480)
T COG5175         110 RVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL  189 (480)
T ss_pred             eeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence            46677889999999975543    33   689999999987531   1    122 3479999999999999988 8888


Q ss_pred             ecCeE
Q 031896           66 INGVL   70 (151)
Q Consensus        66 i~g~~   70 (151)
                      ++|.+
T Consensus       190 ~DGr~  194 (480)
T COG5175         190 LDGRV  194 (480)
T ss_pred             ccCce
Confidence            87766

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]

Probab=94.80  E-value=0.1  Score=47.45  Aligned_cols=57  Identities=23%  Similarity=0.479  Sum_probs=46.7

Q ss_pred             HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECChH
Q 031896           20 NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus        20 ~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~~   80 (151)
                      +.+-+.|++||.|.++.. +  ..+--|.|.++.+|.+|++. ||+.|+|.. |=|.-..|-
T Consensus       274 E~lk~~F~~~G~veRVkk-~--rDYaFVHf~eR~davkAm~~~ngkeldG~~-iEvtLAKP~  331 (506)
T KOG0117|consen  274 ETLKKLFNEFGKVERVKK-P--RDYAFVHFAEREDAVKAMKETNGKELDGSP-IEVTLAKPV  331 (506)
T ss_pred             HHHHHHHHhccceEEeec-c--cceeEEeecchHHHHHHHHHhcCceecCce-EEEEecCCh
Confidence            345578999999999885 3  34888899999999999998 999999965 887766554

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=94.62  E-value=0.16  Score=47.30  Aligned_cols=69  Identities=20%  Similarity=0.295  Sum_probs=51.8

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC--CC--CCCeEEEEcCCHHHHHHHHHh-CCceec-CeEEEEEE
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG--PR--DANWMHILYQNRSDAQKALSK-NGMQIN-GVLIVGVK   75 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~--p~--~~NWi~i~y~~~~~A~rAL~~-nG~ii~-g~~mIGVk   75 (151)
                      .+-|.|=.+|.+ ..+.+.+.|++||.|.+++.-  .+  ....-.|+|.++.+|++||.. ||..|. |.. |+|.
T Consensus        58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~-l~V~  133 (578)
T TIGR01648        58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRL-LGVC  133 (578)
T ss_pred             CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcc-cccc
Confidence            466888899987 556788889999999987531  12  235899999999999999986 777774 433 5554

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]

Probab=94.26  E-value=0.073  Score=46.82  Aligned_cols=69  Identities=20%  Similarity=0.219  Sum_probs=50.0

Q ss_pred             EEEEecCCCCCHH-HHHHHHhhcCcEEeeccC--CCC-CCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896            8 LIVPFRFPPADTN-LVLREFEKCGVILKHVPG--PRD-ANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus         8 wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~--p~~-~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      -+.|.-.|-.-.+ .+-.-|++||.|++++-.  .+| ..+--|+++|+.+|.||-.+ ||.+|.|.. |=|.-.
T Consensus        98 RLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRk-IEVn~A  171 (376)
T KOG0125|consen   98 RLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRK-IEVNNA  171 (376)
T ss_pred             eeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceE-EEEecc
Confidence            3455545544222 345569999999988632  223 57888999999999999887 999999977 777553

>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]

Probab=92.63  E-value=0.22  Score=41.64  Aligned_cols=57  Identities=23%  Similarity=0.406  Sum_probs=45.7

Q ss_pred             CHHHHHHHHhhcCcEEeeccCC------CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEE
Q 031896           18 DTNLVLREFEKCGVILKHVPGP------RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKP   76 (151)
Q Consensus        18 ~~~~Vl~~F~~~G~I~~~~~~p------~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp   76 (151)
                      ..+.+-+-|++||.|.++.. |      +--.+.-|+|..+.+|++||.. +|.++.|.- |-|.-
T Consensus        26 spd~LrrvFekYG~vgDVyI-Prdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRe-lrVq~   89 (256)
T KOG4207|consen   26 SPDDLRRVFEKYGRVGDVYI-PRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRE-LRVQM   89 (256)
T ss_pred             CHHHHHHHHHHhCcccceec-ccccccccccceeEEEeeecchHHHHHHhhcceeeccce-eeehh
Confidence            45678889999999998763 3      3458899999999999999976 999998865 54444

>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=91.58  E-value=0.24  Score=45.86  Aligned_cols=66  Identities=26%  Similarity=0.358  Sum_probs=56.3

Q ss_pred             CCcEEEEecCCCCCHH-HHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeE
Q 031896            5 SSFLIVPFRFPPADTN-LVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVL   70 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~   70 (151)
                      +...+.||-.|+...+ .+++-|+.+|+|-+++..+.-..=+.|.|-+--+|++||+. |++.|.|..
T Consensus        74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~  141 (549)
T KOG4660|consen   74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKR  141 (549)
T ss_pred             ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence            5678899999999665 77888999999999887676677788999999999999987 888887765

>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=90.43  E-value=0.77  Score=40.70  Aligned_cols=68  Identities=22%  Similarity=0.182  Sum_probs=52.4

Q ss_pred             EecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh--CCceecCeEEEEEEECChH
Q 031896           11 PFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK--NGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus        11 VFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~--nG~ii~g~~mIGVkp~d~~   80 (151)
                      |=|.-++ ....|.+||.+||+|-.++.-+ ...+--|+|.++.+|++|--+  |-.+|+| ..|-|+|-.+.
T Consensus       233 Ig~l~d~v~e~dIrdhFyqyGeirsi~~~~-~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G-~Rl~i~Wg~~~  303 (377)
T KOG0153|consen  233 IGGLNDEVLEQDIRDHFYQYGEIRSIRILP-RKGCAFVTFTTREAAEKAAEKSFNKLVING-FRLKIKWGRPK  303 (377)
T ss_pred             ecccccchhHHHHHHHHhhcCCeeeEEeec-ccccceeeehhhHHHHHHHHhhcceeeecc-eEEEEEeCCCc
Confidence            3344334 4457889999999999887543 445899999999999999887  6567777 66999997774

>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function

Probab=90.36  E-value=1.3  Score=29.80  Aligned_cols=54  Identities=17%  Similarity=0.225  Sum_probs=40.4

Q ss_pred             cCCcEEEEecCCCCCHHHHHHHHhhcCcEEeeccCCCCCCe-----EEEEcCCHHHHHHHHHh
Q 031896            4 ISSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANW-----MHILYQNRSDAQKALSK   61 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NW-----i~i~y~~~~~A~rAL~~   61 (151)
                      +....|.|.|...=.++.|..+|..+-.-    ..|..--|     ..|.|.+...|++||..
T Consensus         3 ~rpeavhirGvd~lsT~dI~~y~~~y~~~----~~~~~IEWIdDtScNvvf~d~~~A~~AL~~   61 (62)
T PF10309_consen    3 IRPEAVHIRGVDELSTDDIKAYFSEYFDE----EGPFRIEWIDDTSCNVVFKDEETAARALVA   61 (62)
T ss_pred             ceeceEEEEcCCCCCHHHHHHHHHHhccc----CCCceEEEecCCcEEEEECCHHHHHHHHHc
Confidence            34567999999999999999999998111    01222234     47999999999999973

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=90.10  E-value=1.3  Score=32.31  Aligned_cols=68  Identities=19%  Similarity=0.181  Sum_probs=37.4

Q ss_pred             EEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh---C---CceecCeEEEEEEEC
Q 031896            8 LIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK---N---GMQINGVLIVGVKPL   77 (151)
Q Consensus         8 wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~---n---G~ii~g~~mIGVkp~   77 (151)
                      -|.+-|.... ....+-..|+++|.|--+.+ ..|..=-||+|.++.+|++||.+   .   +..|.+.. +-+..+
T Consensus         3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~-~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~-~~~~vL   77 (105)
T PF08777_consen    3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDF-SRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKE-VTLEVL   77 (105)
T ss_dssp             EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSS-EEEE--
T ss_pred             EEEEecCCCCcCHHHHHHHHHhcCCcceEEe-cCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCce-EEEEEC
Confidence            3556666655 45677788999998876554 45888899999999999988875   3   44555544 555555

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]

Probab=89.35  E-value=0.78  Score=42.60  Aligned_cols=63  Identities=16%  Similarity=0.164  Sum_probs=51.2

Q ss_pred             cCCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEE
Q 031896           13 RFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKP   76 (151)
Q Consensus        13 Gfp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp   76 (151)
                      .|-.+..+.|+++-.++|.|+++..-+.-...++|+|.|...|..|.+. ||.=|+|.+ |-.+-
T Consensus       461 n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~-Ita~~  524 (549)
T KOG0147|consen  461 NWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRM-ITAKY  524 (549)
T ss_pred             chhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccce-eEEEE
Confidence            3456788899999999999999876444448999999999999999986 999998855 55443

>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=88.70  E-value=4.1  Score=30.85  Aligned_cols=64  Identities=20%  Similarity=0.282  Sum_probs=48.4

Q ss_pred             cCCCC-CHHHHHHHHhhcCcEEeeccCC--CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEE
Q 031896           13 RFPPA-DTNLVLREFEKCGVILKHVPGP--RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKP   76 (151)
Q Consensus        13 Gfp~~-~~~~Vl~~F~~~G~I~~~~~~p--~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp   76 (151)
                      -.|-. ..+.+.+.|.++|+|..++-+-  .-..=-.+.|++-.+|++|..+ +|--+.+.+.+-..+
T Consensus        25 NLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy   92 (124)
T KOG0114|consen   25 NLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY   92 (124)
T ss_pred             cCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence            34444 3568999999999999987542  2345567899999999999987 999888887544333

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=88.56  E-value=1.9  Score=38.06  Aligned_cols=68  Identities=24%  Similarity=0.392  Sum_probs=48.4

Q ss_pred             EecCCCC-CHHHHHHHHhhcCcEEeeccC--CCC-CCeEEEEcCCHHHHHHHHHh-CCceecC-eEEEEEEECCh
Q 031896           11 PFRFPPA-DTNLVLREFEKCGVILKHVPG--PRD-ANWMHILYQNRSDAQKALSK-NGMQING-VLIVGVKPLDP   79 (151)
Q Consensus        11 VFGfp~~-~~~~Vl~~F~~~G~I~~~~~~--p~~-~NWi~i~y~~~~~A~rAL~~-nG~ii~g-~~mIGVkp~d~   79 (151)
                      |==++++ +...+.+.|+.||+||.+.-.  ..| ... -+.|+++.+|++|+.+ ||+.++| .+.||......
T Consensus        81 i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~  154 (369)
T KOG0123|consen   81 IKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE  154 (369)
T ss_pred             ecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence            3334555 445777889999999987531  122 234 8999999999999987 9999975 45577776543

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=88.10  E-value=4  Score=29.59  Aligned_cols=64  Identities=19%  Similarity=0.281  Sum_probs=36.9

Q ss_pred             cEEEEecCCCC-CHHH----HHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEE
Q 031896            7 FLIVPFRFPPA-DTNL----VLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVK   75 (151)
Q Consensus         7 ~wVtVFGfp~~-~~~~----Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVk   75 (151)
                      +-+.|+..|.. +.+.    +-+.+..||-=|-...    ++---|+|.+...|.||+++ +|+-+-|+- |-|.
T Consensus         3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----~~tAilrF~~~~~A~RA~KRmegEdVfG~k-I~v~   72 (90)
T PF11608_consen    3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----GGTAILRFPNQEFAERAQKRMEGEDVFGNK-ISVS   72 (90)
T ss_dssp             EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS---EEE
T ss_pred             cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----CCEEEEEeCCHHHHHHHHHhhcccccccce-EEEE
Confidence            46788999985 3333    4444557886553332    36788999999999999988 777665544 4443

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]

Probab=86.46  E-value=2.5  Score=39.06  Aligned_cols=61  Identities=18%  Similarity=0.192  Sum_probs=47.8

Q ss_pred             CHHHHHHHHhhcCcEEeeccC-C-------CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECCh
Q 031896           18 DTNLVLREFEKCGVILKHVPG-P-------RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDP   79 (151)
Q Consensus        18 ~~~~Vl~~F~~~G~I~~~~~~-p-------~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+.|-.++++||.|..++.. |       .|..-|.|+|.+..+|++|... +|+.++|.+ |-..-||+
T Consensus       422 IlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRt-VvtsYyde  491 (500)
T KOG0120|consen  422 ILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRT-VVASYYDE  491 (500)
T ss_pred             HHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcE-EEEEecCH
Confidence            456777889999999887531 1       3678899999999999999987 999999987 44444544

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=85.70  E-value=2.2  Score=38.98  Aligned_cols=63  Identities=22%  Similarity=0.203  Sum_probs=46.5

Q ss_pred             CHHHHHHHHhhcCcEEeeccC-----CCCCCeEEEEcCCHHHHHHHHHh--CCceecC-eEEEEEEECChH
Q 031896           18 DTNLVLREFEKCGVILKHVPG-----PRDANWMHILYQNRSDAQKALSK--NGMQING-VLIVGVKPLDPM   80 (151)
Q Consensus        18 ~~~~Vl~~F~~~G~I~~~~~~-----p~~~NWi~i~y~~~~~A~rAL~~--nG~ii~g-~~mIGVkp~d~~   80 (151)
                      .-..+.+.|++||.+.|+.-.     -....+.-|+|.++.+|.+|..-  |-+.|-| ..-|=|||.|-+
T Consensus        47 sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E  117 (510)
T KOG0144|consen   47 SEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGE  117 (510)
T ss_pred             cHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchh
Confidence            456889999999999987421     13457888999999998888765  5555533 344888988765

>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]

Probab=84.41  E-value=5.6  Score=33.97  Aligned_cols=74  Identities=18%  Similarity=0.243  Sum_probs=56.5

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC---CC--CCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG---PR--DANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~---p~--~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      +...|-|--.+.+. -+.+.+.|..||.|.++.-.   .+  -..+-.|.|.++.+|+||+.. ||.-. .++++-|-+-
T Consensus       188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy-d~LILrvEws  266 (270)
T KOG0122|consen  188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY-DNLILRVEWS  266 (270)
T ss_pred             ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc-ceEEEEEEec
Confidence            45567777788774 34568889999999987531   12  257899999999999999987 88777 4577888876


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .|
T Consensus       267 kP  268 (270)
T KOG0122|consen  267 KP  268 (270)
T ss_pred             CC
Confidence            65

>PLN03213 repressor of silencing 3; Provisional

Probab=83.59  E-value=13  Score=35.00  Aligned_cols=76  Identities=12%  Similarity=0.053  Sum_probs=60.1

Q ss_pred             cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEeecc-CCCCCCeEEEEcCCH--HHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILKHVP-GPRDANWMHILYQNR--SDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~-~p~~~NWi~i~y~~~--~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      ..+.-|.|=|.+.+.+ +.+...|++||+|.+... ..+|..+-+|.|.+.  .++.+|+. .||....|+- |-|-...
T Consensus         8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~-LKVNKAK   86 (759)
T PLN03213          8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGR-LRLEKAK   86 (759)
T ss_pred             CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCce-eEEeecc
Confidence            3455677888888844 578889999999998753 235678999999987  78999998 5999998877 8888876


Q ss_pred             hH
Q 031896           79 PM   80 (151)
Q Consensus        79 ~~   80 (151)
                      +.
T Consensus        87 P~   88 (759)
T PLN03213         87 EH   88 (759)
T ss_pred             HH
Confidence            64

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=83.25  E-value=4.7  Score=35.56  Aligned_cols=63  Identities=17%  Similarity=0.270  Sum_probs=50.4

Q ss_pred             EecCCCCCHHHHHHHHhhcCcEEeecc---CCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEE
Q 031896           11 PFRFPPADTNLVLREFEKCGVILKHVP---GPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKP   76 (151)
Q Consensus        11 VFGfp~~~~~~Vl~~F~~~G~I~~~~~---~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp   76 (151)
                      ..| |.-....+.+.|+..|.++..+-   . +.-.+-++.|+++.+|.|||.. |...+.|.- |-+.|
T Consensus         5 ~vg-~~v~e~~l~~~f~~~~~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~-~rim~   71 (369)
T KOG0123|consen    5 YVG-PDVTEAMLFDKFSPAGPVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVLKGKP-IRIMW   71 (369)
T ss_pred             ecC-CcCChHHHHHHhcccCCceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCcccCCcE-EEeeh
Confidence            345 55567788999999999998753   2 3668899999999999999987 888988854 66666

>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]

Probab=83.08  E-value=3.5  Score=32.62  Aligned_cols=71  Identities=20%  Similarity=0.134  Sum_probs=53.1

Q ss_pred             cEE-EEecCCCCCH-HHHHHHHhhcCcEEeeccCC---C--CCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECC
Q 031896            7 FLI-VPFRFPPADT-NLVLREFEKCGVILKHVPGP---R--DANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLD   78 (151)
Q Consensus         7 ~wV-tVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d   78 (151)
                      -|| .|-|.-++.+ +.|-+.|..||+|-...-.-   +  -..+.-|.|.+..+||.|+.. ||.-|-|.- |-|-+|-
T Consensus        72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~-v~VDw~F  150 (170)
T KOG0130|consen   72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN-VSVDWCF  150 (170)
T ss_pred             eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc-eeEEEEE
Confidence            454 5778877654 58889999999998764211   1  257888999999999999975 887776644 7787774

>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]

Probab=82.94  E-value=2.6  Score=39.20  Aligned_cols=58  Identities=31%  Similarity=0.412  Sum_probs=44.7

Q ss_pred             HHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHH-HHhCCceecCeEE-EEEEE
Q 031896           19 TNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKA-LSKNGMQINGVLI-VGVKP   76 (151)
Q Consensus        19 ~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rA-L~~nG~ii~g~~m-IGVkp   76 (151)
                      ...+..-|+-||.|..+.-.-     ....+-.|+|.+..+|++| ++.||-.|.|..| |+++-
T Consensus       292 e~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~  356 (549)
T KOG0147|consen  292 EDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT  356 (549)
T ss_pred             HHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence            346677799999998764211     2357888999999999999 6779999999998 55554

>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]

Probab=82.72  E-value=3.4  Score=34.45  Aligned_cols=47  Identities=21%  Similarity=0.338  Sum_probs=35.3

Q ss_pred             HHhhcCcEEeeccC--CCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEE
Q 031896           25 EFEKCGVILKHVPG--PRDANWMHILYQNRSDAQKALSK-NGMQINGVLI   71 (151)
Q Consensus        25 ~F~~~G~I~~~~~~--p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~m   71 (151)
                      .|++||+|+++...  +--.+=-||.|.+...|..||+. +|-.+=|..|
T Consensus        33 LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m   82 (221)
T KOG4206|consen   33 LFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM   82 (221)
T ss_pred             HHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence            89999999998752  22235566778898888888875 8888877654

>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]

Probab=81.99  E-value=3.2  Score=36.12  Aligned_cols=63  Identities=19%  Similarity=0.302  Sum_probs=48.9

Q ss_pred             cCCcEEEEecCCCCCHH-HHHHHHhhcCcEEeecc----CC-CCCCeEEEEcCCHHHHHHHHHh-CCcee
Q 031896            4 ISSFLIVPFRFPPADTN-LVLREFEKCGVILKHVP----GP-RDANWMHILYQNRSDAQKALSK-NGMQI   66 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~----~p-~~~NWi~i~y~~~~~A~rAL~~-nG~ii   66 (151)
                      .++|-+.||=.|.+..+ .+++-|--||.|++-..    .. ....+--+.|+|+.+|+.|+.- ||-+|
T Consensus       283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQI  352 (371)
T KOG0146|consen  283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQI  352 (371)
T ss_pred             CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhh
Confidence            46788999999999554 78899999999997432    11 2356778999999999999976 66544

>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]

Probab=80.45  E-value=6.5  Score=37.12  Aligned_cols=56  Identities=27%  Similarity=0.399  Sum_probs=48.0

Q ss_pred             HHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896           20 NLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus        20 ~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      +.+-..|++||.++++.- |     .-..+--|+|.+..+|.+||.. ||..|.|.- |.|-|.
T Consensus       132 ~dLk~vFs~~G~V~Ei~I-P~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~-VAVDWA  193 (678)
T KOG0127|consen  132 PDLKNVFSNFGKVVEIVI-PRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRP-VAVDWA  193 (678)
T ss_pred             HHHHHHHhhcceEEEEEc-ccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCce-eEEeee
Confidence            477889999999999874 3     1248899999999999999987 999999977 999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	151
1wwh_A	119	Crystal Structure Of The Mppn Domain Of Mouse Nup35		3e-10

>pdb|1WWH|A Chain A, Crystal Structure Of The Mppn Domain Of Mouse Nup35 Length = 119

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 9  IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
          +  F FP A  + +L +F + G ILKHV      NWMHI YQ++  A+KALSK+G     
Sbjct: 27 VTVFGFPQASASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALSKDGRIFGE 85
Query: 69 VLIVGVKP 76
           +++GVKP
Sbjct: 86 SIMIGVKP 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	2e-29
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	3e-20
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	8e-04

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1 Length = 119

 Score =  102 bits (256), Expect = 2e-29
 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 9   IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQING 68
           +  F FP A  + +L +F + G ILKHV      NWMHI YQ++  A+KALSK+G     
Sbjct: 27  VTVFGFPQASASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALSKDGRIFGE 85

Query: 69  VLIVGVKPLDPMQRQALNERINSQGFMTLPPPS 101
            +++GVKP         ++R          P S
Sbjct: 86  SIMIGVKPCIDKNVMENSDRGVLSSPSLSGPSS 118

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii} Length = 132

 Score = 79.8 bits (196), Expect = 3e-20
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 20/99 (20%)

Query: 9   IVPFRFPPADTNLVLREFEKCGVIL-------------------KHVPGPRDANWMHILY 49
           I+ F +P    N V+  F++ G IL                   + VP     +W  I Y
Sbjct: 10  ILVFGYPETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITY 69

Query: 50  QNRSDAQKALSKNGMQINGVLIVGVKPLDPMQRQALNER 88
            N + A  AL +NG   NGVL+ GV P      + L +R
Sbjct: 70  DNPASAVDALLENGAVFNGVLL-GVIPYTKDAVERLQKR 107

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 97

 Score = 35.7 bits (83), Expect = 8e-04
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 24 REFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQING 68
          REF++ G I + +   +  ++ +I Y++   AQ A +K  G  + G
Sbjct: 36 REFDRFGSI-RTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGG 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	100.0
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	100.0
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	98.44
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	98.42
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	98.41
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	98.4
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	98.4
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	98.39
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	98.36
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	98.35
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	98.34
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	98.34
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	98.34
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	98.33
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	98.33
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	98.32
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	98.32
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	98.32
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	98.32
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	98.32
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	98.31
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	98.31
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	98.31
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	98.31
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	98.3
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	98.3
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	98.3
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	98.29
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	98.29
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	98.28
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	98.28
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	98.28
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	98.27
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.27
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	98.27
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	98.26
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	98.26
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	98.26
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	98.25
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	98.25
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	98.25
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	98.25
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	98.24
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	98.24
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	98.23
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	98.23
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	98.23
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	98.23
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	98.22
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	98.21
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	98.21
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	98.21
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	98.2
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	98.2
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	98.2
1x5p_A	97	Negative elongation factor E; structure genomics,	98.2
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	98.2
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	98.19
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	98.19
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	98.19
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	98.19
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	98.18
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	98.18
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	98.18
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	98.18
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	98.17
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.17
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	98.17
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	98.16
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	98.15
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	98.15
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	98.15
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	98.15
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	98.15
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	98.14
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	98.13
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	98.13
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	98.12
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	98.12
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	98.12
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	98.11
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	98.11
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	98.11
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	98.1
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.1
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	98.1
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	98.1
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	98.09
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	98.09
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	98.09
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	98.09
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	98.08
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	98.08
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	98.08
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	98.08
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	98.07
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	98.07
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	98.07
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	98.07
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.06
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	98.05
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	98.05
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	98.04
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	98.04
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	98.04
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	98.03
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.03
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	98.02
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	98.01
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	98.0
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	98.0
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	98.0
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	97.99
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	97.99
2dis_A	109	Unnamed protein product; structural genomics, RRM	97.99
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	97.99
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	97.98
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	97.98
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	97.97
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	97.97
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	97.97
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	97.96
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	97.95
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	97.95
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	97.94
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	97.94
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	97.94
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	97.94
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	97.92
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	97.91
1x4e_A	85	RNA binding motif, single-stranded interacting pro	97.9
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	97.9
2div_A	99	TRNA selenocysteine associated protein; structural	97.9
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	97.89
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	97.88
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	97.87
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	97.86
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	97.85
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	97.85
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	97.84
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	97.84
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	97.84
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	97.83
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	97.83
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	97.8
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	97.8
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	97.8
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	97.79
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	97.78
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	97.77
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	97.77
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	97.76
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	97.75
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	97.75
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	97.74
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	97.73
1x5o_A	114	RNA binding motif, single-stranded interacting pro	97.73
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	97.72
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	97.72
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	97.72
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	97.72
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	97.72
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	97.69
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	97.69
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	97.69
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	97.68
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	97.67
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	97.67
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	97.67
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	97.66
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	97.65
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	97.65
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	97.6
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	97.59
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	97.57
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	97.57
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	97.56
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	97.55
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	97.55
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	97.53
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	97.53
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	97.52
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	97.52
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	97.51
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	97.51
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	97.5
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	97.47
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	97.38
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	97.33
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	97.29
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	97.28
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	97.28
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	97.28
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	96.35
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	97.24
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	97.11
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	97.08
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	97.07
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	97.07
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	96.99
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	96.99
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	96.95
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	96.91
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	96.87
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	96.84
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	96.82
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	96.82
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	96.23
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	96.08
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	95.49
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	93.57
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	92.64
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	91.6
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	90.51
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	89.29

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=100.00  E-value=1.1e-34  Score=216.80  Aligned_cols=85  Identities=36%  Similarity=0.618  Sum_probs=74.8

Q ss_pred             ccCCcEEEEecCCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEEC-ChHH
Q 031896            3 LISSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPL-DPMQ   81 (151)
Q Consensus         3 ~~~~~wVtVFGfp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~-d~~~   81 (151)
                      ..+++||||||||++++++||+||++||+|++++. ++++|||||+|+++++|+|||++||++|+|++||||+|| |+..
T Consensus        21 ~~~~~wVtVFGFp~~~~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~d~~v   99 (119)
T 1wwh_A           21 HLDDTWVTVFGFPQASASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDKNV   99 (119)
T ss_dssp             CGGGGEEEEECCCGGGHHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECCCHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECCCHHH
Confidence            46789999999999999999999999999999997 789999999999999999999999999999999999998 5655


Q ss_pred             HHHHhhh
Q 031896           82 RQALNER   88 (151)
Q Consensus        82 ~~~l~~~   88 (151)
                      +++++++
T Consensus       100 i~~~~~~  106 (119)
T 1wwh_A          100 MENSDRG  106 (119)
T ss_dssp             HC-----
T ss_pred             HHHhhcc
Confidence            5555444

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}

Probab=100.00  E-value=2.3e-33  Score=212.81  Aligned_cols=92  Identities=29%  Similarity=0.480  Sum_probs=71.7

Q ss_pred             CCcEEEEecCCCCCHHHHHHHHhhcCcEEeeccC-----------------C--CCCCeEEEEcCCHHHHHHHHHhCCce
Q 031896            5 SSFLIVPFRFPPADTNLVLREFEKCGVILKHVPG-----------------P--RDANWMHILYQNRSDAQKALSKNGMQ   65 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~~~Vl~~F~~~G~I~~~~~~-----------------p--~~~NWi~i~y~~~~~A~rAL~~nG~i   65 (151)
                      .++||||||||++..++||++|++||+|+++.+.                 |  +++|||||+|+|+.+|+|||++||++
T Consensus         6 ~e~~VtVFGFp~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i   85 (132)
T 3p3d_A            6 GELAILVFGYPETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV   85 (132)
T ss_dssp             --CEEEEECCCGGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred             CceEEEEEecCHHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence            5799999999999999999999999999997532                 2  37999999999999999999999999


Q ss_pred             ecCeEEEEEEECChHHHHHH-----hhhhccCCcccC
Q 031896           66 INGVLIVGVKPLDPMQRQAL-----NERINSQGFMTL   97 (151)
Q Consensus        66 i~g~~mIGVkp~d~~~~~~l-----~~~~~~~~~~~~   97 (151)
                      |+|. ||||+||++.+.++|     .++.|+|+|+++
T Consensus        86 i~G~-mIGV~Py~~~~ve~l~~~~~~~~~dig~~~~~  121 (132)
T 3p3d_A           86 FNGV-LLGVIPYTKDAVERLQKRKLTSSEDIGSGITT  121 (132)
T ss_dssp             ETTE-ECEEEECCHHHHHHHC----------------
T ss_pred             eCcE-EEEEEECCHHHHHHHhcCCcccccccccchhh
Confidence            9995 999999999877775     445666766554

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.44  E-value=2.7e-06  Score=57.93  Aligned_cols=76  Identities=13%  Similarity=0.092  Sum_probs=61.4

Q ss_pred             cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEE
Q 031896            4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKP   76 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp   76 (151)
                      ...+.|.|-|+|+.. .+.|.+.|++||.|.+.....     ....+..|+|.+..+|++|| ..||..|.|.. |-|.+
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~   84 (99)
T 1whw_A            6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM-LHVLP   84 (99)
T ss_dssp             CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE-EEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE-EEEEE
Confidence            356789999999874 457788899999999876421     12479999999999999999 67999998865 88888


Q ss_pred             CChH
Q 031896           77 LDPM   80 (151)
Q Consensus        77 ~d~~   80 (151)
                      ..+.
T Consensus        85 a~~~   88 (99)
T 1whw_A           85 STIK   88 (99)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            8663

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=2.2e-06  Score=58.57  Aligned_cols=75  Identities=23%  Similarity=0.220  Sum_probs=61.4

Q ss_pred             cCCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEEC
Q 031896            4 ISSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPL   77 (151)
Q Consensus         4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~   77 (151)
                      ...+.|.|-|+|.. ..+.+.++|++||.|.++....     ....+..|+|.+..+|++||..||..|.|.. |-|.+.
T Consensus         8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~-l~V~~a   86 (99)
T 2dgs_A            8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK-VEVKRA   86 (99)
T ss_dssp             SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCB-CEEEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeE-EEEEEC
Confidence            35678999999988 4557778899999999876421     1347999999999999999999999998865 888887


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      ++
T Consensus        87 ~~   88 (99)
T 2dgs_A           87 EP   88 (99)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=98.41  E-value=9.7e-07  Score=58.84  Aligned_cols=74  Identities=14%  Similarity=0.148  Sum_probs=59.8

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      +.+-|.|-|+|++.. +.+.++|++||.|.+.....     ....+..|+|.++.+|++||..||..+.|.. |-|.+..
T Consensus         5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~-l~V~~a~   83 (89)
T 3ucg_A            5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ-IKVIPKR   83 (89)
T ss_dssp             HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEE-CEEEETT
T ss_pred             cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcE-EEEEEcc
Confidence            356789999999854 56888999999999875311     1246999999999999999999999998866 8888875


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus        84 ~   84 (89)
T 3ucg_A           84 T   84 (89)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.40  E-value=6.5e-07  Score=63.07  Aligned_cols=78  Identities=18%  Similarity=0.175  Sum_probs=62.4

Q ss_pred             cccCCcEEEEecCCCCCHHHH-H---HHHhhcCcEEeeccCCCC--------CCeEEEEcCCHHHHHHHHHh-CCceecC
Q 031896            2 TLISSFLIVPFRFPPADTNLV-L---REFEKCGVILKHVPGPRD--------ANWMHILYQNRSDAQKALSK-NGMQING   68 (151)
Q Consensus         2 ~~~~~~wVtVFGfp~~~~~~V-l---~~F~~~G~I~~~~~~p~~--------~NWi~i~y~~~~~A~rAL~~-nG~ii~g   68 (151)
                      .++..+-|.|-|+|++..+.- .   +.|++||+|+++......        ..+..|+|.++.+|++||.. ||..|.|
T Consensus        11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g   90 (111)
T 2cpi_A           11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG   90 (111)
T ss_dssp             CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred             cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence            466788899999999866554 4   799999999987642211        14999999999999999997 9999998


Q ss_pred             eEEEEEEECChH
Q 031896           69 VLIVGVKPLDPM   80 (151)
Q Consensus        69 ~~mIGVkp~d~~   80 (151)
                      .. |-|....+.
T Consensus        91 r~-l~V~~a~~k  101 (111)
T 2cpi_A           91 RT-LKASLGTTK  101 (111)
T ss_dssp             EE-EEEESCCCC
T ss_pred             EE-EEEEecccc
Confidence            65 888776653

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=98.40  E-value=2.4e-06  Score=56.89  Aligned_cols=71  Identities=14%  Similarity=0.223  Sum_probs=56.9

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--C-CC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--P-RD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP   76 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p-~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp   76 (151)
                      ..+-|.|-++|+..+ +.+.+.|++||.|.+....  + ++  ..+-.|+|.++.+|++||..||..|+|.. |-|+.
T Consensus        10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~-i~v~~   86 (87)
T 3s7r_A           10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV-IDPKK   86 (87)
T ss_dssp             CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEE-EEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEE-EEEEe
Confidence            567899999999854 5677889999999987531  1 11  35899999999999999999999998865 77664

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=98.39  E-value=2.3e-06  Score=56.72  Aligned_cols=74  Identities=18%  Similarity=0.193  Sum_probs=59.1

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----C-CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----R-DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP   76 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~-~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp   76 (151)
                      ..+.|.|-|+|++. .+.+.+.|++||.|.+.....     . ...+..|+|.+..+|++|+. .||..+.|.. |-|.+
T Consensus         3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~   81 (88)
T 4a8x_A            3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE-ITATA   81 (88)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE-EEEEE
Confidence            45779999999884 456778899999998875311     1 35799999999999999999 5999998865 77777


Q ss_pred             CCh
Q 031896           77 LDP   79 (151)
Q Consensus        77 ~d~   79 (151)
                      +.+
T Consensus        82 a~~   84 (88)
T 4a8x_A           82 VLA   84 (88)
T ss_dssp             ECC
T ss_pred             CCC
Confidence            643

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=98.36  E-value=3.9e-06  Score=55.37  Aligned_cols=72  Identities=13%  Similarity=0.111  Sum_probs=56.9

Q ss_pred             cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC---CC--CCCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEE
Q 031896            4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG---PR--DANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKP   76 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~---p~--~~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp   76 (151)
                      .+.+.|.|-|+|++. .+.+.+.|++||.|.+....   .+  ...+..|+|.++.+|++|+ ..||..+.|.. |-|.+
T Consensus         5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~   83 (85)
T 3mdf_A            5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT-IRVNL   83 (85)
T ss_dssp             CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcE-EEEEE
Confidence            356889999999984 45677789999999987531   11  3578999999999999999 56999998855 66554

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.35  E-value=4.7e-06  Score=57.94  Aligned_cols=75  Identities=19%  Similarity=0.232  Sum_probs=59.9

Q ss_pred             cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCC--CCCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEECCh
Q 031896            4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPR--DANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~--~~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp~d~   79 (151)
                      ...+.|.|-++|+..+ +.|.++|++||.|.++....+  ...+..|+|.+..+|++|| ..||..|.|.. |-|...++
T Consensus        20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~V~~a~~   98 (109)
T 1x4a_A           20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR-LRVEFPRS   98 (109)
T ss_dssp             CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE-CEEECCCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE-EEEEEccc
Confidence            3567899999998854 567888999999988764222  2359999999999999999 67999998855 88877655

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=98.34  E-value=4.1e-06  Score=57.81  Aligned_cols=71  Identities=15%  Similarity=0.281  Sum_probs=59.8

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+-|.|-++|+. ..+.|.+.|++||.|.++...   .++..|+|.++.+|++||. .||..|.|.. |-|.+..+
T Consensus        10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a~~   82 (103)
T 2dgu_A           10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGEN-IEIVFAKP   82 (103)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEE-EEEEECCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCE-EEEEEcCC
Confidence            4567889999987 455777889999999998752   4599999999999999999 5999999865 88888765

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.34  E-value=4.8e-06  Score=58.15  Aligned_cols=72  Identities=15%  Similarity=0.159  Sum_probs=59.4

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecC-----eEEEEEEEC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQING-----VLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g-----~~mIGVkp~   77 (151)
                      ..+-|.|-++|...+ +.+.++|++||+|++..... + .+-.|+|.+..+|++||. .||..|.|     .. |-|...
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~-~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~-i~V~~a   90 (108)
T 1x4c_A           14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR-D-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY-IRVKVD   90 (108)
T ss_dssp             CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET-T-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE-EEEEES
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec-C-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE-EEEEeC
Confidence            356789999998854 57778899999999887532 3 899999999999999999 69999988     54 778777


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      ++
T Consensus        91 ~~   92 (108)
T 1x4c_A           91 GP   92 (108)
T ss_dssp             SC
T ss_pred             CC
Confidence            65

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.34  E-value=3.4e-06  Score=56.77  Aligned_cols=73  Identities=19%  Similarity=0.238  Sum_probs=57.5

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-|+|+.. .+.|.+.|++||.|.+......     ...+..|+|.++.+|++||. .||..|.|.. |-|...
T Consensus        14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~a   92 (95)
T 2cqc_A           14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR-IRVSGP   92 (95)
T ss_dssp             GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE-EEEECC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEec
Confidence            45678999999874 5678888999999988754211     13589999999999999999 5999998865 777654


Q ss_pred             C
Q 031896           78 D   78 (151)
Q Consensus        78 d   78 (151)
                      +
T Consensus        93 ~   93 (95)
T 2cqc_A           93 S   93 (95)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=4.1e-06  Score=56.34  Aligned_cols=71  Identities=17%  Similarity=0.269  Sum_probs=59.5

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+-|.|-++|++ ..+.+.+.|++||.|.+....   .++..|+|.+..+|++|+. .||..+.|.. |-|....+
T Consensus         8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a~~   80 (90)
T 2dnp_A            8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKR-INVELSTK   80 (90)
T ss_dssp             CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEE-CEEEESCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcE-EEEEECCC
Confidence            4567889999988 455778889999999998862   3499999999999999998 5999998865 88888765

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.33  E-value=6.2e-06  Score=58.21  Aligned_cols=80  Identities=16%  Similarity=0.080  Sum_probs=62.5

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcE---EeeccCCC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVI---LKHVPGPR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I---~~~~~~p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      ..+.|.|-++|.+.+ +.|.++|++||.|   +.....++  ...+-.|+|.+..+|++||..||..|.|.. |-|.+..
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~-i~v~~a~   92 (114)
T 2cpy_A           14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGRE-AFVHVVT   92 (114)
T ss_dssp             CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEE-EEEEEEC
T ss_pred             CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeE-EEEEECC
Confidence            456789999999855 4677789999999   33322122  357999999999999999999999999866 9999988


Q ss_pred             hHHHHHH
Q 031896           79 PMQRQAL   85 (151)
Q Consensus        79 ~~~~~~l   85 (151)
                      +......
T Consensus        93 ~~~~~~~   99 (114)
T 2cpy_A           93 LEDMREI   99 (114)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7654443

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=98.32  E-value=3.5e-06  Score=55.83  Aligned_cols=75  Identities=17%  Similarity=0.169  Sum_probs=57.4

Q ss_pred             cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896            4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP   76 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp   76 (151)
                      .+.+.|.|-|+|++. .+.+.+.|++||.|.+.....   +  ...+..|+|.+..+|++||. .||..+.|.. |-|.+
T Consensus         4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~   82 (87)
T 3bs9_A            4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ-IRTNW   82 (87)
T ss_dssp             --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEE
T ss_pred             CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE-EEEEe
Confidence            356788999999874 557778899999999875311   1  13589999999999999999 5999998855 77776


Q ss_pred             CCh
Q 031896           77 LDP   79 (151)
Q Consensus        77 ~d~   79 (151)
                      .++
T Consensus        83 a~~   85 (87)
T 3bs9_A           83 ATR   85 (87)
T ss_dssp             EC-
T ss_pred             cCC
Confidence            654

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=98.32  E-value=1.7e-06  Score=56.15  Aligned_cols=66  Identities=17%  Similarity=0.124  Sum_probs=52.5

Q ss_pred             EEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEE
Q 031896            9 IVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVK   75 (151)
Q Consensus         9 VtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVk   75 (151)
                      |.|-|+|++. .+.+.+.|++||.|.+.....     ....+-.|+|.++.+|++||..||..++|.. |-|+
T Consensus         2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~-l~v~   73 (75)
T 2mss_A            2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKM-VECK   73 (75)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCC-CEEE
T ss_pred             EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEE-EEEE
Confidence            5678899884 457888999999999876421     1235999999999999999999999998865 5554

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=98.32  E-value=4.8e-06  Score=57.95  Aligned_cols=74  Identities=16%  Similarity=0.207  Sum_probs=57.7

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      .++-|.|-+.|++.+ +.+.+.|++||+|.+.....   ++  ..+-.|+|.++.+|++|+. .||..|.|.. |-|...
T Consensus        18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~-l~V~~A   96 (99)
T 4fxv_A           18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT-IKVSYA   96 (99)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEe
Confidence            456789999999855 46777899999999875311   12  2488999999999999997 5999999865 777765


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .|
T Consensus        97 kP   98 (99)
T 4fxv_A           97 RP   98 (99)
T ss_dssp             CB
T ss_pred             eC
Confidence            44

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=6.3e-06  Score=55.62  Aligned_cols=72  Identities=14%  Similarity=0.182  Sum_probs=60.3

Q ss_pred             cCCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            4 ISSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ...+-|.|-++|+. ..+.+.+.|++||.|.+....   .++..|+|.++.+|++|+. .||..|.|.. |-|....+
T Consensus         8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~a~~   81 (92)
T 2dgt_A            8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKR-MHVQLSTS   81 (92)
T ss_dssp             CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEE-EEEEESSC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcE-EEEEEccC
Confidence            35678899999987 555778889999999988762   3499999999999999996 5999998855 88888765

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.32  E-value=3.8e-06  Score=58.84  Aligned_cols=74  Identities=11%  Similarity=0.070  Sum_probs=60.6

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~   79 (151)
                      .+-|.|-|+|.. ....|.++|++||.|+++....     ....+..|+|.+..+|++||..||..|.|.. |-|.+..+
T Consensus        25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~-l~V~~a~~  103 (114)
T 2cq4_A           25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVP-IIVQASQA  103 (114)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEE-EEEEEHHH
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeE-EEEEecCC
Confidence            467889999988 4557888999999999876421     1246999999999999999988999998865 88988766


Q ss_pred             H
Q 031896           80 M   80 (151)
Q Consensus        80 ~   80 (151)
                      .
T Consensus       104 ~  104 (114)
T 2cq4_A          104 E  104 (114)
T ss_dssp             H
T ss_pred             C
Confidence            4

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.31  E-value=8.8e-06  Score=55.86  Aligned_cols=75  Identities=19%  Similarity=0.135  Sum_probs=61.3

Q ss_pred             cCCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            4 ISSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      ...+.|.|-++|+. ..+.|.+.|++||.|.++....   ....+..|+|.+..+|++||. .||..|.|.. |-|....
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~a~   91 (103)
T 2cqi_A           13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE-VKVNWAT   91 (103)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEE-EEEEECC
T ss_pred             CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCe-EEEEECC
Confidence            35678999999998 4557888899999999875321   234699999999999999998 7999999865 8888876


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus        92 ~   92 (103)
T 2cqi_A           92 T   92 (103)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.31  E-value=3.7e-06  Score=56.72  Aligned_cols=74  Identities=19%  Similarity=0.171  Sum_probs=59.8

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-++|+. ..+.|.+.|++||.|+++.....     ...+..|+|.+..+|++||. .||..|.|.. |-|...
T Consensus         4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~a   82 (95)
T 2dnz_A            4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP-MRVGHV   82 (95)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC-CEEEES
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE-EEEEEc
Confidence            4678899999987 45578888999999998764221     23599999999999999999 6999998866 888877


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus        83 ~~   84 (95)
T 2dnz_A           83 TE   84 (95)
T ss_dssp             SC
T ss_pred             cc
Confidence            65

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.31  E-value=4e-06  Score=57.15  Aligned_cols=73  Identities=18%  Similarity=0.200  Sum_probs=59.7

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceec--CeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQIN--GVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~--g~~mIGVkp~d~   79 (151)
                      ..+.|.|-++|+. ..+.|.+.|++||.|.+... ..+..+..|+|.+..+|++|+. .||..|.  |.. |-|....+
T Consensus        16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~-l~V~~a~~   92 (97)
T 1why_A           16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH-VKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRR-LRVDFAKS   92 (97)
T ss_dssp             CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEE-CSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB-CEEEECCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-eCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE-EEEEECCC
Confidence            3467889999987 45578888999999998875 3456799999999999999999 5999998  644 77777654

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.31  E-value=6.3e-06  Score=56.38  Aligned_cols=75  Identities=13%  Similarity=-0.007  Sum_probs=60.8

Q ss_pred             cCCcEEEEecCCCCCHHHHH-----HHHhhcCcEEeeccCC--CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEE
Q 031896            4 ISSFLIVPFRFPPADTNLVL-----REFEKCGVILKHVPGP--RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVK   75 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~~~Vl-----~~F~~~G~I~~~~~~p--~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVk   75 (151)
                      .+.+-|.|-+.|......-|     +.|++||+|.+.....  ....+-.|+|.++.+|++|+. .||..|.|.. |-|.
T Consensus         7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~-l~V~   85 (96)
T 2dgx_A            7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKK-ILVS   85 (96)
T ss_dssp             SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEE-EEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeE-EEEE
Confidence            45677899999998666555     7999999999876421  125699999999999999999 7999999866 8888


Q ss_pred             ECCh
Q 031896           76 PLDP   79 (151)
Q Consensus        76 p~d~   79 (151)
                      ...+
T Consensus        86 ~a~~   89 (96)
T 2dgx_A           86 LATG   89 (96)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            7654

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.30  E-value=5.8e-06  Score=55.85  Aligned_cols=74  Identities=19%  Similarity=0.156  Sum_probs=59.8

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEee-ccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKH-VPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP   76 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~-~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp   76 (151)
                      ..+.|.|-++|+.. .+.+.+.|++||.|.+. ....     ....+..|+|.++.+|++||. .||..|.|.. |-|.+
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~   82 (96)
T 1x5t_A            4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP-ITVSY   82 (96)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE-CEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEE
Confidence            46788999999984 55778889999999877 4311     124699999999999999999 7999998865 88888


Q ss_pred             CCh
Q 031896           77 LDP   79 (151)
Q Consensus        77 ~d~   79 (151)
                      ..+
T Consensus        83 a~~   85 (96)
T 1x5t_A           83 AFK   85 (96)
T ss_dssp             SCC
T ss_pred             ecc
Confidence            765

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.30  E-value=4.8e-06  Score=57.98  Aligned_cols=73  Identities=15%  Similarity=0.169  Sum_probs=60.4

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+-|.|-|+|+. ..+.+.+.|++||.|.++... ....+..|+|.+..+|++|+. .||..|.|.. |-|.+..+
T Consensus        24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a~~   98 (109)
T 1x4g_A           24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF-PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHV-VKCYWGKE   98 (109)
T ss_dssp             SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEECCCC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHcCCCEECCcE-EEEEecCC
Confidence            4678899999988 455777889999999988753 347899999999999999995 5999998855 88887655

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=98.30  E-value=1.5e-05  Score=56.64  Aligned_cols=84  Identities=13%  Similarity=0.078  Sum_probs=62.3

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--C-C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--P-R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p-~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      ..+-|.|-+.|+... +.+.+.|++||.|++....  + +  ...+-.|+|.+..+|++|+. .||..|.|.. |-|...
T Consensus         5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~-i~V~~a   83 (110)
T 3s8s_A            5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNI-IHAQLD   83 (110)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEEC
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeE-EEEEEC
Confidence            456789999999854 4677789999999987531  1 1  13588999999999999997 5999999976 777775


Q ss_pred             Ch-HHHHHHhhhh
Q 031896           78 DP-MQRQALNERI   89 (151)
Q Consensus        78 d~-~~~~~l~~~~   89 (151)
                      .+ ..|+.+.+..
T Consensus        84 ~~~~~~~~~~~~~   96 (110)
T 3s8s_A           84 IKGQQRMKYYELI   96 (110)
T ss_dssp             STTHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHh
Confidence            33 3444444443

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=98.29  E-value=6.6e-06  Score=57.14  Aligned_cols=74  Identities=15%  Similarity=0.150  Sum_probs=59.5

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      ..+-|.|-|+|... ...|.+.|++||.|.++.....     ...+..|+|.+..+|++||. .||..|.|.. |-|.+.
T Consensus        25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a  103 (110)
T 1oo0_B           25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT-IQVDWC  103 (110)
T ss_dssp             TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEES
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE-EEEEEc
Confidence            45679999999984 4577888999999998764211     14799999999999999998 6999998855 888876


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus       104 ~~  105 (110)
T 1oo0_B          104 FV  105 (110)
T ss_dssp             EE
T ss_pred             cc
Confidence            54

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=8.4e-06  Score=54.81  Aligned_cols=72  Identities=21%  Similarity=0.218  Sum_probs=56.6

Q ss_pred             cCCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896            4 ISSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP   76 (151)
Q Consensus         4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp   76 (151)
                      ...+.|.|-|+|+. ..+.|.++|++||.|.++.....     ...+..|+|.++.+|++|+. .||..|.|.. |-|..
T Consensus        14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~   92 (94)
T 2e5h_A           14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV-IKASI   92 (94)
T ss_dssp             CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE-EEEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE-EEEEe
Confidence            35678999999987 45577888999999998764221     23599999999999999995 7999998865 65544

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.28  E-value=4.4e-06  Score=59.64  Aligned_cols=83  Identities=10%  Similarity=0.077  Sum_probs=64.1

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCc---EEeecc--CCCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGV---ILKHVP--GPRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP   76 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~---I~~~~~--~p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp   76 (151)
                      ..+.|.|-++|.+.+ +.|.++|++||.   |.++..  ...+  ..+-.|+|.+..+|++||.+||..|.|.. |-|.+
T Consensus        16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~-i~V~~   94 (118)
T 2db1_A           16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRY-IEVFK   94 (118)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEE-EEEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeE-EEEEE
Confidence            456799999999855 467888999999   555432  1122  35899999999999999999999999976 99999


Q ss_pred             CChHHHHHHhhh
Q 031896           77 LDPMQRQALNER   88 (151)
Q Consensus        77 ~d~~~~~~l~~~   88 (151)
                      ..+.+.+.+..+
T Consensus        95 a~~~~~~~~~~~  106 (118)
T 2db1_A           95 SHRTEMDWVLKH  106 (118)
T ss_dssp             ECHHHHHHHHHT
T ss_pred             CCHHHHHHHHHH
Confidence            887765555443

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=1.5e-06  Score=61.77  Aligned_cols=62  Identities=23%  Similarity=0.288  Sum_probs=52.7

Q ss_pred             CCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896           14 FPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus        14 fp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~   79 (151)
                      |+++....+++.|++||+|+..+.. .+.  +-|+|++..+|++|++.||..++|.. |-|....|
T Consensus        24 fd~~l~~~L~~~F~~~G~Vi~vr~~-~d~--~fVtF~d~~sAlaAi~mnG~~v~Gr~-LkV~lkt~   85 (91)
T 2dnr_A           24 FDDALIDELLQQFASFGEVILIRFV-EDK--MWVTFLEGSSALNVLSLNGKELLNRT-ITIALKSP   85 (91)
T ss_dssp             CCHHHHHHHHHHHHTTCCEEEEEEC-SSS--EEEEESSHHHHHHGGGGTTCEETTEE-EEEEECCC
T ss_pred             CCHHHHHHHHHHHHhCCCeEEEEEe-cCC--EEEEECChHHHHHHHhcCCeEeCCeE-EEEEeCCC
Confidence            6777788999999999999988762 333  78999999999999999999998866 88887653

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.28  E-value=9.5e-06  Score=55.68  Aligned_cols=74  Identities=16%  Similarity=0.142  Sum_probs=59.9

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+.|.|-++|+.. .+.|.+.|++||.|.++....   ....+..|+|.+..+|++||. .||..|.|.. |-|.+..+
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a~~   92 (103)
T 2cq3_A           14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK-IEVNNATA   92 (103)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEE-CEEEECCS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEccc
Confidence            46789999999884 456788899999999875421   125699999999999999998 5999998855 88888765

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=3.7e-06  Score=55.61  Aligned_cols=70  Identities=19%  Similarity=0.132  Sum_probs=56.4

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh--CCceecCeEEEEEEE
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK--NGMQINGVLIVGVKP   76 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~--nG~ii~g~~mIGVkp   76 (151)
                      ..+-|.|-|+|+. ..+.+.+.|++||.|.+.... ...++..|+|.+..+|++|+..  ||..+.|.. |-|.+
T Consensus        11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~-l~v~~   83 (85)
T 2ytc_A           11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRR-LNVKW   83 (85)
T ss_dssp             SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEE-CCEEE
T ss_pred             CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCE-EEEEe
Confidence            4567889999988 455788899999999987752 3468999999999999999994  999998854 55543

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=98.27  E-value=5e-06  Score=54.61  Aligned_cols=72  Identities=14%  Similarity=0.145  Sum_probs=57.3

Q ss_pred             cEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC--C-C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            7 FLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG--P-R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         7 ~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~--p-~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      +-|.|-|+|++. .+.+.+.|++||.|.+....  + +  ...+..|.|.++.+|++|+. .||..+.|.. |-|.+..+
T Consensus         2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~-l~v~~a~~   80 (83)
T 3md1_A            2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP-LRINWAAK   80 (83)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE-CEEEECCC
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcE-EEEEecCc
Confidence            457888999985 45688889999999987531  1 1  24689999999999999999 5999998865 88887765

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.27  E-value=3.6e-06  Score=57.16  Aligned_cols=72  Identities=14%  Similarity=0.149  Sum_probs=56.0

Q ss_pred             CcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896            6 SFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      .+-|.|-++|.+.+ +.+.++|++||.|.++......+.+-.|.|.++.+|++||..||..|.|.. |-|.+..
T Consensus         8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~-l~V~~a~   80 (94)
T 2e5g_A            8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHR-LRVRPRE   80 (94)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEE-CCCBCSC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEE-EEEEECC
Confidence            35688899998854 567788999999998743222223999999999999999999999998855 6665443

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.26  E-value=6.9e-06  Score=56.59  Aligned_cols=73  Identities=14%  Similarity=0.036  Sum_probs=58.7

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCC------CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPR------DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~------~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-++|.+.. +.|.++|++|| |+++.....      ...+..|+|.+..+|++||..||..|.|.. |-|.+.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~-l~V~~a   91 (104)
T 1wi8_A           14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKR-IRVDVA   91 (104)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEE-CEEEEC
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcE-EEEEEc
Confidence            457788999998854 56778899999 888764211      145999999999999999988999998865 888887


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      ++
T Consensus        92 ~~   93 (104)
T 1wi8_A           92 DQ   93 (104)
T ss_dssp             CC
T ss_pred             cC
Confidence            65

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=98.26  E-value=2.8e-06  Score=59.41  Aligned_cols=84  Identities=25%  Similarity=0.167  Sum_probs=64.8

Q ss_pred             cCCcEEEEecCCCCCH-HHHHHHHhhcCc---EEeeccC--CC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEE
Q 031896            4 ISSFLIVPFRFPPADT-NLVLREFEKCGV---ILKHVPG--PR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVK   75 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~---I~~~~~~--p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVk   75 (151)
                      ...+.|.|-|+|.+.+ +.|.++|++||.   |.++...  +.  ...+-.|.|.+..+|++||.+||..|+|.. |-|.
T Consensus         9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~-i~V~   87 (107)
T 2lmi_A            9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRY-VEVY   87 (107)
T ss_dssp             SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC-CCCE
T ss_pred             CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeE-EEEE
Confidence            3567899999999854 577888999998   6554421  11  245999999999999999999999998876 8999


Q ss_pred             ECChHHHHHHhhh
Q 031896           76 PLDPMQRQALNER   88 (151)
Q Consensus        76 p~d~~~~~~l~~~   88 (151)
                      +..+...+....+
T Consensus        88 ~a~~~~~~~~~~~  100 (107)
T 2lmi_A           88 EINNEDVDALMKS  100 (107)
T ss_dssp             ECCHHHHHHHHHT
T ss_pred             ECCHHHHHHHHHh
Confidence            9888655544433

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=98.26  E-value=8.6e-06  Score=56.12  Aligned_cols=72  Identities=13%  Similarity=0.099  Sum_probs=60.3

Q ss_pred             cCCcEEEEecCCC-C-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            4 ISSFLIVPFRFPP-A-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         4 ~~~~wVtVFGfp~-~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ...+-|.|-|+|+ . ..+.+.+.|++||.|.+...   ..++..|.|.+..+|++|+. .||..+.|.- |-|....+
T Consensus        20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a~~   94 (97)
T 2xnq_A           20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKK-LILEVSSS   94 (97)
T ss_dssp             CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEE-CEEEECCC
T ss_pred             CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEecCC
Confidence            4567899999997 5 66678899999999999886   25799999999999999999 7999998855 77776543

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.25  E-value=4e-06  Score=57.62  Aligned_cols=75  Identities=17%  Similarity=0.185  Sum_probs=60.6

Q ss_pred             cCCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896            4 ISSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP   76 (151)
Q Consensus         4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp   76 (151)
                      ...+.|.|-++|.. ..+.|.++|++||.|.++....     ....+..|+|.+..+|++||. .||..|.|.. |-|..
T Consensus        11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~V~~   89 (103)
T 2dnm_A           11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE-LRVQV   89 (103)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC-CEEEE
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE-EEEEE
Confidence            35678999999988 4557788899999999876421     124699999999999999999 6999998865 78887


Q ss_pred             CCh
Q 031896           77 LDP   79 (151)
Q Consensus        77 ~d~   79 (151)
                      ..+
T Consensus        90 a~~   92 (103)
T 2dnm_A           90 ARY   92 (103)
T ss_dssp             CSS
T ss_pred             CCc
Confidence            754

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.25  E-value=7.8e-06  Score=56.23  Aligned_cols=74  Identities=14%  Similarity=0.158  Sum_probs=60.1

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCC------CCCeEEEEcCCHHHHHHHHHh--CCceecCeEEEEEE
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPR------DANWMHILYQNRSDAQKALSK--NGMQINGVLIVGVK   75 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~------~~NWi~i~y~~~~~A~rAL~~--nG~ii~g~~mIGVk   75 (151)
                      ..+-|.|-++|+.. .+.|.+.|++||.|.++.....      ...+..|+|.+..+|++||..  ||..|.|.. |-|.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~-l~v~   92 (107)
T 2cph_A           14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR-LVLE   92 (107)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB-CEEE
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE-EEEE
Confidence            45778899999884 5577888999999998764221      257999999999999999987  899998865 8888


Q ss_pred             ECCh
Q 031896           76 PLDP   79 (151)
Q Consensus        76 p~d~   79 (151)
                      ...+
T Consensus        93 ~a~~   96 (107)
T 2cph_A           93 WADS   96 (107)
T ss_dssp             ECCC
T ss_pred             eCCC
Confidence            8765

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.25  E-value=5.8e-06  Score=56.49  Aligned_cols=75  Identities=17%  Similarity=0.173  Sum_probs=59.5

Q ss_pred             cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896            4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      ...+.|.|-++|++.+ +.|.+.|++||.|.+....  +++  ..+..|+|.+..+|++||.. ||..|.|.. |-|...
T Consensus        15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a   93 (100)
T 2do4_A           15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENI-IKVAIS   93 (100)
T ss_dssp             CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE-EEEEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEC
Confidence            3567899999998854 5688899999999887532  112  26899999999999999954 999998865 888877


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      ++
T Consensus        94 ~~   95 (100)
T 2do4_A           94 NS   95 (100)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=98.25  E-value=1.3e-05  Score=54.43  Aligned_cols=73  Identities=14%  Similarity=0.149  Sum_probs=58.9

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      .+.|.|-|+|.. ..+.+.+.|++||.|.+.....     ....+..|+|.+..+|++|+. .||..+.|.. |-|....
T Consensus         2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a~   80 (96)
T 2x1f_A            2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRF-LKCGYSS   80 (96)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEECS
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeE-EEEEEcC
Confidence            467889999987 4557788899999999876421     125799999999999999995 6999998855 8888875


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus        81 ~   81 (96)
T 2x1f_A           81 N   81 (96)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.24  E-value=3.6e-06  Score=57.20  Aligned_cols=74  Identities=19%  Similarity=0.217  Sum_probs=59.2

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC--C------CCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEE
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP--R------DANWMHILYQNRSDAQKALSK-NGMQINGVLIVGV   74 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p--~------~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGV   74 (151)
                      ..+.|.|-++|.+. .+.|.+.|++||.|.++....  .      ...+..|+|.+..+|++||.. ||..|.|.. |-|
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V   82 (98)
T 2cpf_A            4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK-LEV   82 (98)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE-CEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE-EEE
Confidence            45778999999874 457778899999998875321  1      136999999999999999995 999998865 888


Q ss_pred             EECCh
Q 031896           75 KPLDP   79 (151)
Q Consensus        75 kp~d~   79 (151)
                      .+.++
T Consensus        83 ~~a~~   87 (98)
T 2cpf_A           83 RISER   87 (98)
T ss_dssp             ECSSC
T ss_pred             EEccC
Confidence            88765

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.24  E-value=7.9e-06  Score=56.15  Aligned_cols=75  Identities=11%  Similarity=0.133  Sum_probs=60.3

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-++|+. ..+.|.++|++||.|+++.....     ...+..|+|.+..+|++||.. ||..|.|.. |-|.+.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a   92 (105)
T 1x5u_A           14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP-IRVNKA   92 (105)
T ss_dssp             TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB-CEEEET
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE-EEEEEC
Confidence            4678999999988 45577888999999998764211     235999999999999999995 999998866 888887


Q ss_pred             ChH
Q 031896           78 DPM   80 (151)
Q Consensus        78 d~~   80 (151)
                      .+.
T Consensus        93 ~~~   95 (105)
T 1x5u_A           93 SAH   95 (105)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            663

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.23  E-value=7.9e-06  Score=55.86  Aligned_cols=74  Identities=14%  Similarity=0.145  Sum_probs=59.7

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-++|... .+.|.+.|++||.|.++....     ....+..|+|.+..+|++||. .||..|.|.. |-|...
T Consensus        11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~V~~a   89 (102)
T 2cqb_A           11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT-IRVNLA   89 (102)
T ss_dssp             CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE-EEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE-EEEEeC
Confidence            46778999999874 557778899999999876422     135699999999999999996 5999998865 888887


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus        90 ~~   91 (102)
T 2cqb_A           90 KP   91 (102)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=98.23  E-value=1e-05  Score=56.82  Aligned_cols=74  Identities=11%  Similarity=0.122  Sum_probs=58.6

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      ..+-|.|-|+|.+. .+.+.++|++||.|.++....     ....+-.|+|.+..+|++||..+|..|+|.. |-|....
T Consensus        24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~-l~V~~a~  102 (109)
T 2rs2_A           24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT-IDPKVAF  102 (109)
T ss_dssp             --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEE-EEEEECC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEE-EEEEEcc
Confidence            45678899999885 456778899999999876421     1246999999999999999999999998865 8888765


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus       103 ~  103 (109)
T 2rs2_A          103 P  103 (109)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=98.23  E-value=3.6e-06  Score=58.26  Aligned_cols=77  Identities=14%  Similarity=0.160  Sum_probs=61.1

Q ss_pred             CcEEEEecCCC------CCH-HHHHHHHhhcCcEEeeccC--C---CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEE
Q 031896            6 SFLIVPFRFPP------ADT-NLVLREFEKCGVILKHVPG--P---RDANWMHILYQNRSDAQKALS-KNGMQINGVLIV   72 (151)
Q Consensus         6 ~~wVtVFGfp~------~~~-~~Vl~~F~~~G~I~~~~~~--p---~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mI   72 (151)
                      ++.|.|-|.|.      +.+ +.+.+.|++||.|.+....  +   ....+-.|+|.++.+|++||. .||..|.|+-.|
T Consensus         6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l   85 (100)
T 3ns6_A            6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL   85 (100)
T ss_dssp             GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred             CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence            57899999998      544 4677889999999987631  1   124799999999999999996 799999983448


Q ss_pred             EEEECChHHH
Q 031896           73 GVKPLDPMQR   82 (151)
Q Consensus        73 GVkp~d~~~~   82 (151)
                      -|....+.++
T Consensus        86 ~V~~a~~~~~   95 (100)
T 3ns6_A           86 FLYTMKDVER   95 (100)
T ss_dssp             EEEESHHHHH
T ss_pred             EEEECchhhh
Confidence            8998887643

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.23  E-value=3.6e-06  Score=57.57  Aligned_cols=74  Identities=19%  Similarity=0.151  Sum_probs=61.0

Q ss_pred             cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ...+-|.|-++|+.. .+.+.+.|++||.|.++.. ....++..|+|.++.+|++|+. .||..|.|.. |-|....+
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~-~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~-l~v~~a~~   88 (99)
T 2cpj_A           13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-HKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQ-LRVRFACH   88 (99)
T ss_dssp             CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEE-ETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBC-CEEEESSC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEE-ecCCCEEEEEECCHHHHHHHHHHhCCCEeCCce-EEEEEcCC
Confidence            356789999999874 4567788999999998875 3457899999999999999995 5999998855 88888765

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.22  E-value=2.3e-06  Score=58.98  Aligned_cols=75  Identities=11%  Similarity=0.112  Sum_probs=59.4

Q ss_pred             cCCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCC---C--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEEC
Q 031896            4 ISSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPR---D--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPL   77 (151)
Q Consensus         4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~---~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~   77 (151)
                      ...+.|.|-++|+. ..+.|.++|++||.|.++.....   +  ..+..|+|.++.+|++||..||..|.|.. |-|.+.
T Consensus        14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~-l~V~~a   92 (105)
T 2dh8_A           14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRN-IDPKPC   92 (105)
T ss_dssp             SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEE-EBCCCS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEE-EEEEEc
Confidence            45678889999988 45578888999999998753211   1  25899999999999999999999999865 777776


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus        93 ~~   94 (105)
T 2dh8_A           93 TP   94 (105)
T ss_dssp             CC
T ss_pred             cC
Confidence            55

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.21  E-value=5.9e-06  Score=58.01  Aligned_cols=74  Identities=12%  Similarity=0.090  Sum_probs=59.2

Q ss_pred             CcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896            6 SFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~   79 (151)
                      .+.|.|-++|.... +.|.+.|++||+|+++.....     ...+-.|+|.+..+|++||..||..|.|.. |-|.+..+
T Consensus        27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~-l~V~~a~~  105 (116)
T 1x4b_A           27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRV-VEPKRAVA  105 (116)
T ss_dssp             HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEE-EEEECCSS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEE-EEEEECCC
Confidence            46788999998754 567788999999987753211     235999999999999999999999998865 88888765


Q ss_pred             H
Q 031896           80 M   80 (151)
Q Consensus        80 ~   80 (151)
                      .
T Consensus       106 ~  106 (116)
T 1x4b_A          106 R  106 (116)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.21  E-value=4e-06  Score=59.02  Aligned_cols=75  Identities=13%  Similarity=0.105  Sum_probs=60.2

Q ss_pred             cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896            4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      ...+-|.|-|+|++.+ +.+.++|++||.|.++....    ....+..|+|.++.+|++||..||..++|.. |-|.+-.
T Consensus         9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~-l~V~~~~   87 (103)
T 1s79_A            9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD-LLILFKD   87 (103)
T ss_dssp             SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTT-CEEEEHH
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEE-EEEEEch
Confidence            3457789999999854 57778899999999876411    1347999999999999999999999999876 7777754


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus        88 ~   88 (103)
T 1s79_A           88 D   88 (103)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.21  E-value=6e-06  Score=56.72  Aligned_cols=75  Identities=16%  Similarity=0.225  Sum_probs=59.4

Q ss_pred             cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896            4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP   76 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp   76 (151)
                      ...+.|.|-++|+... +.|.+.|++||.|.++....   ++  ..+..|+|.+..+|++||. .||..|.|.. |-|..
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~   91 (103)
T 2cq0_A           13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI-LNVEW   91 (103)
T ss_dssp             SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE-CEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE-EEEEE
Confidence            3567899999998854 56677789999999876421   11  2489999999999999999 7999998855 88888


Q ss_pred             CCh
Q 031896           77 LDP   79 (151)
Q Consensus        77 ~d~   79 (151)
                      ..+
T Consensus        92 a~~   94 (103)
T 2cq0_A           92 AKP   94 (103)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            765

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.20  E-value=7.1e-06  Score=57.57  Aligned_cols=74  Identities=16%  Similarity=0.136  Sum_probs=59.7

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+.|.|-|+|.+. .+.+.+.|++||.|.+.....   ....+..|+|.+..+|++|+. .||..|.|.. |-|....+
T Consensus        28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a~~  106 (109)
T 2err_A           28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK-IEVNNATA  106 (109)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE-CEEEECCC
T ss_pred             CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEECCC
Confidence            46789999999984 556888899999998875421   125799999999999999999 5999998855 77877654

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=98.20  E-value=5.9e-06  Score=56.91  Aligned_cols=74  Identities=15%  Similarity=0.148  Sum_probs=58.7

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      ..+-|.|-|+|.. ..+.|.+.|++||.|.++....     ....+..|+|.+..+|++||. .||..|.|.. |-|...
T Consensus        22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~a  100 (106)
T 1p27_B           22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP-ISVDWC  100 (106)
T ss_dssp             TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB-CEEEES
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE-EEEEee
Confidence            4567999999998 4557788899999999875311     114689999999999999998 5999998865 777776


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus       101 ~~  102 (106)
T 1p27_B          101 FV  102 (106)
T ss_dssp             EE
T ss_pred             cC
Confidence            43

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.20  E-value=6.1e-06  Score=57.33  Aligned_cols=76  Identities=11%  Similarity=0.079  Sum_probs=60.5

Q ss_pred             cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEe-ecc--CCC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEEC
Q 031896            4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILK-HVP--GPR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPL   77 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~-~~~--~p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~   77 (151)
                      ...+.|.|-|+|.+.+ +.|.++|++||.|.+ +..  ..+  ...+-.|.|.++.+|++||.+||..|+|.. |-|.+.
T Consensus        13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~-i~v~~~   91 (104)
T 1wg5_A           13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY-IEIFKS   91 (104)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC-CEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE-EEEEEC
Confidence            3467889999999855 467788899999986 432  112  246999999999999999999999999976 888887


Q ss_pred             ChH
Q 031896           78 DPM   80 (151)
Q Consensus        78 d~~   80 (151)
                      .+.
T Consensus        92 ~~~   94 (104)
T 1wg5_A           92 SRA   94 (104)
T ss_dssp             CTT
T ss_pred             CHH
Confidence            653

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.20  E-value=1.4e-05  Score=54.53  Aligned_cols=72  Identities=18%  Similarity=0.236  Sum_probs=59.1

Q ss_pred             CCcEEEEecCCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+-|.|-++ ....+.+.++|++||.|.++.. .....+..|.|.+..+|++||.. ||..|.|.. |-|....+
T Consensus        14 ~~~~l~V~n~-~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~-l~v~~a~~   86 (97)
T 1x5p_A           14 KGNTLYVYGE-DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQ-LKVNIARK   86 (97)
T ss_dssp             CCSEEEEECS-SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEE-EEEECCSS
T ss_pred             CCCEEEEcCC-CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeE-EEEEECCC
Confidence            4567888886 6677889999999999998875 34567999999999999999955 999998854 77877654

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=98.20  E-value=8.8e-06  Score=54.83  Aligned_cols=72  Identities=11%  Similarity=0.185  Sum_probs=57.1

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-++|+. ..+.|.+.|++||.|.++...  +.+  ..+..|+|.++.+|++||. .||..|.|.. |-|...
T Consensus        15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~a   92 (95)
T 2ywk_A           15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP-INVSGP   92 (95)
T ss_dssp             GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE-CEEECC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE-EEEEEc
Confidence            4578899999987 455778889999999987531  111  3589999999999999999 6999998865 666654

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=98.19  E-value=9.6e-06  Score=56.71  Aligned_cols=75  Identities=16%  Similarity=0.162  Sum_probs=59.8

Q ss_pred             cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896            4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP   76 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp   76 (151)
                      ...+.|.|-|+|... .+.|.++|++||.|.++....   ++  ..+..|+|.+..+|++||. .||..|.|.. |-|.+
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~   91 (115)
T 2dgo_A           13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ-IRTNW   91 (115)
T ss_dssp             TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE-CEEEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEE
Confidence            456789999999884 457788899999999875411   11  3589999999999999997 5999998855 88888


Q ss_pred             CCh
Q 031896           77 LDP   79 (151)
Q Consensus        77 ~d~   79 (151)
                      .++
T Consensus        92 a~~   94 (115)
T 2dgo_A           92 ATR   94 (115)
T ss_dssp             SSC
T ss_pred             ccC
Confidence            765

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.19  E-value=1.9e-05  Score=53.83  Aligned_cols=72  Identities=19%  Similarity=0.331  Sum_probs=60.1

Q ss_pred             cCCcEEEEecCCCCC-HHHHHHHHhhc--CcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            4 ISSFLIVPFRFPPAD-TNLVLREFEKC--GVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~--G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ...+.|.|-++|+.. .+.+.+.|++|  |.|.+... +  .++..|+|.+..+|++||. .||..|.|.. |-|....+
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~-~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~a~~   88 (99)
T 2cpd_A           13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-I--RDYAFVHFSNREDAVEAMKALNGKVLDGSP-IEVTLAKP   88 (99)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE-C--SSEEEEEESSHHHHHHHHHHHSSEEETTEE-EEEECCCC
T ss_pred             CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-e--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE-EEEEECCC
Confidence            345789999999884 55777889999  99998875 2  4599999999999999999 8999998865 88887765

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=98.19  E-value=1.3e-05  Score=55.98  Aligned_cols=75  Identities=19%  Similarity=0.219  Sum_probs=61.4

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--CCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECChH
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--PRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~~   80 (151)
                      ..+.|.|-|+|+..+ +.+.+.|++||.|.+....  .....+..|.|.+..+|++|+. .||..+.|.. |-|.+..+.
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~a~~~   85 (115)
T 3lqv_A            7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY-LVVLYYNAN   85 (115)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB-CEEEECCHH
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE-EEEEEecCC
Confidence            357899999999854 5677889999999987642  1235799999999999999999 7999998866 888888753

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=98.19  E-value=8.8e-06  Score=53.76  Aligned_cols=63  Identities=19%  Similarity=0.342  Sum_probs=52.1

Q ss_pred             cEEEEecCCCCC-------HHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHH-hCCceecCe
Q 031896            7 FLIVPFRFPPAD-------TNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALS-KNGMQINGV   69 (151)
Q Consensus         7 ~wVtVFGfp~~~-------~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~   69 (151)
                      +.|.|-|.|...       .+.+.+.|++||.|.+.....   ....+..|+|.++.+|++|+. .||..+.|.
T Consensus         2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~   75 (81)
T 2krb_A            2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ   75 (81)
T ss_dssp             CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred             CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence            568899999876       267888999999999876421   124799999999999999999 599999886

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.18  E-value=1.1e-06  Score=63.05  Aligned_cols=59  Identities=19%  Similarity=0.344  Sum_probs=50.1

Q ss_pred             CCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896           14 FPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP   76 (151)
Q Consensus        14 fp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp   76 (151)
                      ||++....+++.|++||+|+..+.. .+.  +.|+|.+..+|++||+.||..++|.. |-|..
T Consensus        33 fd~~l~~~L~~~F~~~G~Vilvr~v-~d~--~fVtF~d~~sAl~AI~ldG~~v~Gr~-L~V~~   91 (95)
T 1ufw_A           33 FPEDLRTELMQTLGSYGTIVLVRIN-QGQ--MLVTFADSHSALSVLDVDGMKVKGRA-VKISG   91 (95)
T ss_dssp             CCHHHHHHHHHHHHHHSCCSEEEEE-TTE--EEEECSCSHHHHHHHHGGGSEETTEE-EEEEC
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEEe-cCc--EEEEEcChHHHHHHHhcCCeeeCCeE-EEEec
Confidence            7777788999999999999988752 233  88999999999999999999999866 77654

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=98.18  E-value=7.7e-06  Score=58.20  Aligned_cols=77  Identities=17%  Similarity=0.170  Sum_probs=61.4

Q ss_pred             cccCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC--C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEE
Q 031896            2 TLISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP--R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVK   75 (151)
Q Consensus         2 ~~~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p--~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVk   75 (151)
                      +-...+.|.|-|+|.+. .+.|.+.|++||.|.++....  +  ...+..|+|.+..+|++|+. .||..|.|.. |-|.
T Consensus         3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~-l~V~   81 (116)
T 2fy1_A            3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA-IKVE   81 (116)
T ss_dssp             TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB-CEEE
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEE
Confidence            44567889999999874 457778899999998875421  1  23799999999999999997 5999998866 7788


Q ss_pred             ECCh
Q 031896           76 PLDP   79 (151)
Q Consensus        76 p~d~   79 (151)
                      ...+
T Consensus        82 ~a~~   85 (116)
T 2fy1_A           82 QAKK   85 (116)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            7765

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.18  E-value=1e-05  Score=54.38  Aligned_cols=71  Identities=15%  Similarity=0.226  Sum_probs=59.2

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+-|.|-++|++. .+.+.+.|++||.|.+....   .++..|+|.++.+|++|+. .||..+.|.. |-|.+..+
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~a~~   79 (90)
T 2dnq_A            7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN-INVEASKN   79 (90)
T ss_dssp             CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCB-CEEECSSC
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcE-EEEEECCC
Confidence            45678899999884 45688889999999988762   5799999999999999995 7999998865 78877755

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=98.18  E-value=9.5e-06  Score=57.61  Aligned_cols=75  Identities=15%  Similarity=0.166  Sum_probs=59.9

Q ss_pred             cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896            4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP   76 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp   76 (151)
                      ...+.|.|-|+|+.. .+.|.+.|++||.|.++....   +  ...+..|+|.+..+|++||. .||..|.|.. |-|..
T Consensus        20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~   98 (126)
T 3ex7_B           20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP-ISVDW   98 (126)
T ss_dssp             SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB-CEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE-EEEEE
Confidence            346789999999985 456788899999999876421   1  15699999999999999996 6999998865 88887


Q ss_pred             CCh
Q 031896           77 LDP   79 (151)
Q Consensus        77 ~d~   79 (151)
                      +.+
T Consensus        99 a~~  101 (126)
T 3ex7_B           99 CFV  101 (126)
T ss_dssp             SEE
T ss_pred             ecC
Confidence            754

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=98.17  E-value=5e-06  Score=58.89  Aligned_cols=73  Identities=14%  Similarity=0.135  Sum_probs=58.7

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---C--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---R--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~   79 (151)
                      .+.|.|-|+|.. ..+.|.+.|++||.|.++....   +  ...+..|+|.+..+|++||..||..|.|.. |-|.+.++
T Consensus        36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~-l~V~~a~~  114 (124)
T 2jwn_A           36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRT-IKVLPKRT  114 (124)
T ss_dssp             HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEE-CEEEESSC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeE-EEEEECCC
Confidence            467889999988 4567888899999998765311   1  245999999999999999988999998865 88888654

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=98.17  E-value=5.2e-06  Score=56.84  Aligned_cols=71  Identities=13%  Similarity=0.070  Sum_probs=57.4

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-|+|.+. .+.+.+.|++||.|.+.... ....+..|.|.+..+|++|+.. ||..+.|.. |-|.+.
T Consensus        26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a   98 (101)
T 2la4_A           26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRN-LRTGWG   98 (101)
T ss_dssp             SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE-CCCCBC
T ss_pred             CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeE-EEEEec
Confidence            35789999999884 55777889999999988753 4578999999999999999965 999998854 555443

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.17  E-value=1.7e-05  Score=54.42  Aligned_cols=75  Identities=12%  Similarity=0.114  Sum_probs=58.7

Q ss_pred             cCCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCC---C--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEEC
Q 031896            4 ISSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPR---D--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPL   77 (151)
Q Consensus         4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~---~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~   77 (151)
                      ...+-|.|-++|.. ..+.|.+.|++||.|.++.....   +  ..+-.|+|.+..+|++||. +|..|+|.. |-|...
T Consensus        13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~-l~v~~a   90 (103)
T 2cqg_A           13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRW-CDCKLP   90 (103)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEE-EEEECC
T ss_pred             CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeE-EEEEec
Confidence            34567899999987 45578889999999998753111   1  2489999999999999999 688998865 888887


Q ss_pred             ChH
Q 031896           78 DPM   80 (151)
Q Consensus        78 d~~   80 (151)
                      .+.
T Consensus        91 ~~~   93 (103)
T 2cqg_A           91 NSK   93 (103)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            663

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.16  E-value=4.7e-06  Score=56.44  Aligned_cols=74  Identities=16%  Similarity=0.206  Sum_probs=58.4

Q ss_pred             CcEEEEecCCCCC-HHHHHHHHhhcCcEEeec--cCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECChH
Q 031896            6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHV--PGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus         6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~--~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~~   80 (151)
                      .+-|.|-++|+.. .+.+.+.|++||.|.+.+  ........-.|+|.+..+|++|+. .||..|.|.. |-|....+.
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~-l~V~~a~~~   92 (96)
T 2e44_A           15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFT-LKVAYIPDE   92 (96)
T ss_dssp             CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCB-CEEEECCCC
T ss_pred             CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcE-EEEEEcCcc
Confidence            5678999999885 457788899999999873  211223338999999999999997 7999998866 888887664

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.15  E-value=6.9e-06  Score=56.15  Aligned_cols=74  Identities=18%  Similarity=0.198  Sum_probs=58.8

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-++|+.. .+.|.+.|++||.|.++.....     ...+..|+|.++.+|++|| ..||..|.|.. |-|.+.
T Consensus        11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~a   89 (102)
T 1x5s_A           11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ-IRVDQA   89 (102)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC-CEEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE-EEEEEC
Confidence            56789999999884 5578888999999988764221     2359999999999999999 56999998855 777776


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus        90 ~~   91 (102)
T 1x5s_A           90 GK   91 (102)
T ss_dssp             EC
T ss_pred             CC
Confidence            44

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.15  E-value=7.1e-06  Score=58.60  Aligned_cols=76  Identities=17%  Similarity=0.305  Sum_probs=60.8

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeec---cCCCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHV---PGPRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~---~~p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      ..+.|.|-|+|.+.+ +.|.++|++||.|.+..   ...++  ..+-.|.|.+..+|++||..||..|.|.. |-|.+..
T Consensus        24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~-i~V~~a~  102 (124)
T 1wel_A           24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF-IQVHPIT  102 (124)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSC-BEEEEEC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcE-EEEEECC
Confidence            457899999999854 56778899999986521   11222  35999999999999999999999999976 8999987


Q ss_pred             hHH
Q 031896           79 PMQ   81 (151)
Q Consensus        79 ~~~   81 (151)
                      +..
T Consensus       103 ~~~  105 (124)
T 1wel_A          103 KKG  105 (124)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=98.15  E-value=7e-06  Score=57.14  Aligned_cols=75  Identities=17%  Similarity=0.301  Sum_probs=60.0

Q ss_pred             CcEEEEecCCCCC-------HHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEE
Q 031896            6 SFLIVPFRFPPAD-------TNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGV   74 (151)
Q Consensus         6 ~~wVtVFGfp~~~-------~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGV   74 (151)
                      .+.|.|-|.|...       ...+.+.|++||.|.++....   ....+..|+|.+..+|++|+.. ||..|.|.-.|-|
T Consensus        15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V   94 (105)
T 2nlw_A           15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV   94 (105)
T ss_dssp             CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEE
T ss_pred             CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEE
Confidence            5689999999876       267888999999999876421   1247999999999999999995 9999999723777


Q ss_pred             EECChH
Q 031896           75 KPLDPM   80 (151)
Q Consensus        75 kp~d~~   80 (151)
                      ...++.
T Consensus        95 ~~a~~~  100 (105)
T 2nlw_A           95 NLFTDF  100 (105)
T ss_dssp             ECSCCC
T ss_pred             EEcchH
Confidence            776653

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=98.15  E-value=1.4e-05  Score=59.37  Aligned_cols=75  Identities=12%  Similarity=0.063  Sum_probs=59.6

Q ss_pred             CCcEEEEecCCCCCHH-HHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPADTN-LVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      ..+.|.|-|.|++.+. .|.+.|++||.|.+.....   ++  ..+..|+|.+..+|.+||..||..|+|.. |-|.+..
T Consensus       103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~-i~v~~a~  181 (196)
T 1l3k_A          103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN-CEVRKAL  181 (196)
T ss_dssp             CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEE-CEEEECC
T ss_pred             CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEE-EEEEecC
Confidence            3467899999988554 6788899999999875321   11  35899999999999999999999999965 9999987


Q ss_pred             hH
Q 031896           79 PM   80 (151)
Q Consensus        79 ~~   80 (151)
                      +.
T Consensus       182 ~k  183 (196)
T 1l3k_A          182 SK  183 (196)
T ss_dssp             --
T ss_pred             Ch
Confidence            75

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=98.15  E-value=1.2e-05  Score=54.34  Aligned_cols=76  Identities=13%  Similarity=0.128  Sum_probs=59.7

Q ss_pred             ccCCcEEEEecCCCCCHH-HHH----HHHhhcCcEEeeccCC--CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEE
Q 031896            3 LISSFLIVPFRFPPADTN-LVL----REFEKCGVILKHVPGP--RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGV   74 (151)
Q Consensus         3 ~~~~~wVtVFGfp~~~~~-~Vl----~~F~~~G~I~~~~~~p--~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGV   74 (151)
                      ....+.|.|-|+|++... .+.    +.|++||.|.+.....  ....+..|+|.+..+|++|+. .||..+.|.. |-|
T Consensus         5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v   83 (97)
T 1nu4_A            5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP-MRI   83 (97)
T ss_dssp             -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE-CEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE-EEE
Confidence            446788999999998665 444    7999999999876411  124689999999999999998 4999998855 888


Q ss_pred             EECCh
Q 031896           75 KPLDP   79 (151)
Q Consensus        75 kp~d~   79 (151)
                      ....+
T Consensus        84 ~~a~~   88 (97)
T 1nu4_A           84 QYAKT   88 (97)
T ss_dssp             EECSS
T ss_pred             EEccC
Confidence            87754

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=98.14  E-value=1.5e-05  Score=56.64  Aligned_cols=74  Identities=14%  Similarity=0.214  Sum_probs=59.7

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC--C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP--R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p--~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      ..+.|.|-|+|+. ..+.+.+.|++||+|.+.....  +  ...+..|+|.+..+|++||. .||..|.|.. |-|...+
T Consensus        34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a~  112 (124)
T 2kt5_A           34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP-MDIQLVA  112 (124)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE-EEEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE-EEEEEeC
Confidence            4568999999987 5567888899999998765321  1  34699999999999999999 7999998865 8888765


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus       113 ~  113 (124)
T 2kt5_A          113 S  113 (124)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=98.13  E-value=7.2e-06  Score=57.17  Aligned_cols=70  Identities=17%  Similarity=0.210  Sum_probs=59.3

Q ss_pred             CcEEEEecCCCC--CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEECCh
Q 031896            6 SFLIVPFRFPPA--DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         6 ~~wVtVFGfp~~--~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp~d~   79 (151)
                      .+.|.|-++|+.  ..+.+.+.|++||.|.++..   ...+..|+|.+..+|++|| ..||..|.|.. |-|....+
T Consensus        27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~V~~a~~   99 (110)
T 1wf1_A           27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQT-LDINMAGE   99 (110)
T ss_dssp             SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEE-CCEEESCC
T ss_pred             CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeE-EEEEECCC
Confidence            367899999997  56688889999999998876   4579999999999999999 56999998855 78877653

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.13  E-value=6.7e-06  Score=56.30  Aligned_cols=74  Identities=15%  Similarity=0.133  Sum_probs=59.4

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      .+-|.|-|+|.. ..+.|.+.|++||.|.+.....   ++  ..+..|+|.+..+|++||. .||..+.|.. |-|....
T Consensus         8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a~   86 (104)
T 1p1t_A            8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA-LRVDNAA   86 (104)
T ss_dssp             HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC-BEEEETT
T ss_pred             ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE-EEEEeCC
Confidence            456889999987 4567888999999998765311   11  4689999999999999996 7999998866 8898876


Q ss_pred             hH
Q 031896           79 PM   80 (151)
Q Consensus        79 ~~   80 (151)
                      +.
T Consensus        87 ~~   88 (104)
T 1p1t_A           87 SE   88 (104)
T ss_dssp             CT
T ss_pred             Cc
Confidence            64

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=98.12  E-value=1.3e-05  Score=55.11  Aligned_cols=76  Identities=20%  Similarity=0.144  Sum_probs=59.9

Q ss_pred             cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHH-hCCcee---cCeEEEE
Q 031896            4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALS-KNGMQI---NGVLIVG   73 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~-~nG~ii---~g~~mIG   73 (151)
                      ...+-|.|-++|.... +.|.+.|++||.|.++.....     ...+..|+|.+..+|++||. .||..+   .|.. |-
T Consensus        11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~-l~   89 (106)
T 2dgp_A           11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP-IQ   89 (106)
T ss_dssp             TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC-CE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce-EE
Confidence            3567789999998854 577788999999998764221     24699999999999999997 799876   6655 88


Q ss_pred             EEECChH
Q 031896           74 VKPLDPM   80 (151)
Q Consensus        74 Vkp~d~~   80 (151)
                      |.+.++.
T Consensus        90 v~~a~~~   96 (106)
T 2dgp_A           90 VKPADSE   96 (106)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            8888763

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=98.12  E-value=1.6e-05  Score=56.30  Aligned_cols=73  Identities=19%  Similarity=0.176  Sum_probs=57.3

Q ss_pred             CcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      .+-|.|=++|++. -+.+.+.|++||.|+++....   ....+-.|+|.++.+|++||. .||..|.|.. |-|.+..+
T Consensus         5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~-i~V~~a~~   82 (115)
T 4f25_A            5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK-VFVGRFKS   82 (115)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEE-CEEEESSC
T ss_pred             CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEECCC
Confidence            4458888999984 457888899999999765311   113589999999999999996 5999999865 78887654

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.12  E-value=1.5e-05  Score=54.84  Aligned_cols=73  Identities=11%  Similarity=0.088  Sum_probs=57.9

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCC---C--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPR---D--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~---~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      ..+.|.|-++|.+.. +.|.++|++|| |+++.....   +  ..+..|+|.+..+|++||..||..|.|.. |-|...+
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~-l~V~~a~   91 (103)
T 2dng_A           14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRS-LRVDIAE   91 (103)
T ss_dssp             SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEE-CEEEECC
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeE-EEEEEec
Confidence            457788999998854 56777889997 887653111   1  24899999999999999999999998865 8888876


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus        92 ~   92 (103)
T 2dng_A           92 G   92 (103)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=98.11  E-value=1e-05  Score=60.04  Aligned_cols=81  Identities=11%  Similarity=0.055  Sum_probs=63.2

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCc---EEeecc--CCCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGV---ILKHVP--GPRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP   76 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~---I~~~~~--~p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp   76 (151)
                      ..+.|.|-|.|.+.+ +.|.++|++||.   |.++..  .+.+  ..+-.|+|.++.+|++||..||..|+|.. |-|.+
T Consensus        43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~-i~V~~  121 (136)
T 2hgl_A           43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRY-IEVFK  121 (136)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSE-EEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEE-EEEEE
Confidence            457799999999855 567788999999   444321  1122  35999999999999999999999999976 99999


Q ss_pred             CChHHHHHHh
Q 031896           77 LDPMQRQALN   86 (151)
Q Consensus        77 ~d~~~~~~l~   86 (151)
                      ..+.+.+.+.
T Consensus       122 a~~~e~~~~~  131 (136)
T 2hgl_A          122 SHRTEMDWVL  131 (136)
T ss_dssp             CCHHHHHHHH
T ss_pred             CChHHHHHHH
Confidence            9877655544

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=98.11  E-value=5.9e-06  Score=56.53  Aligned_cols=72  Identities=17%  Similarity=0.176  Sum_probs=58.8

Q ss_pred             EEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECChH
Q 031896            8 LIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus         8 wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~~   80 (151)
                      -|.|-+.|++ ..+.+.+.|++||.|.+.........+..|+|.+..+|++|+. .||..+.|.. |-|.+..+.
T Consensus         2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~a~~~   75 (101)
T 2hvz_A            2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSR-VRVELSTGM   75 (101)
T ss_dssp             EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCC-CEEEESSSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcE-EEEEEccCC
Confidence            4778899987 4557888899999998876522246799999999999999999 5999998866 888887663

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=98.11  E-value=9e-06  Score=57.65  Aligned_cols=63  Identities=13%  Similarity=0.087  Sum_probs=52.0

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCe
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGV   69 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~   69 (151)
                      ..+-|.|-++|.+. .+.+.++|++||+|++..... + .+-.|+|.+..+|++||. .||..|.|.
T Consensus        15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~-~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr   79 (115)
T 3beg_B           15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR-D-GTGVVEFVRKEDMTYAVRKLDNTKFRSH   79 (115)
T ss_dssp             --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT-T-SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec-C-CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence            34678899999874 457788899999999887532 3 899999999999999999 699999884

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=98.10  E-value=3.5e-05  Score=57.99  Aligned_cols=80  Identities=14%  Similarity=0.180  Sum_probs=63.7

Q ss_pred             CcEEEEecCCCCCH-HHHHHHHhhcC--cEEeeccC---CCC--CCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEE
Q 031896            6 SFLIVPFRFPPADT-NLVLREFEKCG--VILKHVPG---PRD--ANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKP   76 (151)
Q Consensus         6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G--~I~~~~~~---p~~--~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp   76 (151)
                      .+-|.|-++|.+.+ +.+.+.|++||  +|+++...   .++  ..+-.|.|.+..+|++||.. ||..|.|.. |-|.+
T Consensus        55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~-l~V~~  133 (156)
T 3n9u_C           55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEK-VDVRP  133 (156)
T ss_dssp             -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEE-CEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE-eEEEE
Confidence            46899999999855 56778899999  89887531   122  24899999999999999999 999999865 99999


Q ss_pred             CChHHHHHHh
Q 031896           77 LDPMQRQALN   86 (151)
Q Consensus        77 ~d~~~~~~l~   86 (151)
                      +++......+
T Consensus       134 a~~~~~~~~e  143 (156)
T 3n9u_C          134 ATRQNLSQFE  143 (156)
T ss_dssp             CCHHHHHHHH
T ss_pred             cCCCcchhhh
Confidence            9886554443

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.10  E-value=2e-05  Score=54.81  Aligned_cols=74  Identities=14%  Similarity=0.063  Sum_probs=58.8

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      ..+.|.|-++|.. ..+.|.++|++||.|+++...  +++  ..+..|+|.+..+|++||. .||..|.|.. |-|...+
T Consensus        14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a~   92 (114)
T 2do0_A           14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP-MHVKMDE   92 (114)
T ss_dssp             CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEECS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE-EEEEEcc
Confidence            3567899999987 456788889999999876531  122  3589999999999999999 6999998855 8888765


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus        93 ~   93 (114)
T 2do0_A           93 R   93 (114)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=98.10  E-value=5.6e-06  Score=53.48  Aligned_cols=66  Identities=12%  Similarity=0.128  Sum_probs=51.7

Q ss_pred             EEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEE
Q 031896            9 IVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVK   75 (151)
Q Consensus         9 VtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVk   75 (151)
                      |.|-|.|++. .+.+.+.|++||.|.+.....     ....+-.|+|.++.+|++||..||..+.|.- |-|+
T Consensus         2 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~-l~v~   73 (75)
T 1iqt_A            2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSK-CEIK   73 (75)
T ss_dssp             EEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBC-CCEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEE-EEEE
Confidence            5677888874 557888899999998875421     1246999999999999999999999998865 4443

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.10  E-value=1.6e-05  Score=58.14  Aligned_cols=82  Identities=16%  Similarity=0.109  Sum_probs=62.4

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEE----eec--cCCCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEE
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVIL----KHV--PGPRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVK   75 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~----~~~--~~p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVk   75 (151)
                      +.+.|.|-|.|.+.+ +.|.++|++||.|.    ++.  ...++  ..+-.|+|.++.+|++||.+||..|.|.. |=|.
T Consensus        22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~-i~V~  100 (123)
T 2dha_A           22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRY-IELF  100 (123)
T ss_dssp             SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCE-ECCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeE-EEEE
Confidence            456789999998854 57888899999762    221  11222  36899999999999999999999999876 8999


Q ss_pred             ECChHHHHHHhh
Q 031896           76 PLDPMQRQALNE   87 (151)
Q Consensus        76 p~d~~~~~~l~~   87 (151)
                      +..+.+.+.+..
T Consensus       101 ~a~~~e~~~~~~  112 (123)
T 2dha_A          101 RSTAAEVQQVLN  112 (123)
T ss_dssp             EECHHHHHHHHH
T ss_pred             ECCHHHHHHHHH
Confidence            988765554443

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.09  E-value=1.6e-05  Score=56.06  Aligned_cols=71  Identities=14%  Similarity=0.149  Sum_probs=57.9

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      +.+-|.|-++|+..+ ..+.+.|++||.|.++.. +....+..|.|.+..+|++|+. .||..|.|.. |-|...
T Consensus         9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a   81 (111)
T 1whx_A            9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL-PEGGITAIVEFLEPLEARKAFRHLAYSKFHHVP-LYLEWA   81 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB-CEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE-EEEEEC
Confidence            346788999998855 467778999999998875 3466799999999999999997 5999998866 556554

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=98.09  E-value=1.4e-05  Score=55.97  Aligned_cols=74  Identities=19%  Similarity=0.194  Sum_probs=58.0

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCC---C--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPR---D--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~---~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-++|.+. .+.|.+.|++||.|+++.....   +  ..+..|+|.+..+|++||. .||..|.|.. |-|...
T Consensus        24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~a  102 (115)
T 2cpz_A           24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR-LKVQLK  102 (115)
T ss_dssp             TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE-CEEECC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEEc
Confidence            45779999999984 4577788999999987653111   1  2489999999999999995 5999998865 778776


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus       103 ~~  104 (115)
T 2cpz_A          103 RS  104 (115)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=98.09  E-value=1.5e-05  Score=56.16  Aligned_cols=72  Identities=14%  Similarity=0.105  Sum_probs=59.8

Q ss_pred             cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ...+-|.|-|+|... .+.|.+.|++||.|.+....   ..+..|.|.+..+|++|+. .||..+.|.. |-|....+
T Consensus        29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a~~  102 (108)
T 2jvo_A           29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQP-LEVVYSKL  102 (108)
T ss_dssp             CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEE-CEEESCSC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeE-EEEEEecC
Confidence            356788999999884 45788889999999988762   6799999999999999998 5999998865 77877654

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=98.09  E-value=8.7e-06  Score=59.09  Aligned_cols=74  Identities=11%  Similarity=0.108  Sum_probs=59.1

Q ss_pred             CcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896            6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~   79 (151)
                      .+-|.|-|.|++. .+.+.+.|++||.|.+......     ...+..|+|.+..+|++||..||..++|.. |-|.+.+|
T Consensus        87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~-i~V~~a~p  165 (167)
T 2cjk_A           87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRK-IEIKRAEP  165 (167)
T ss_dssp             CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSC-EEEEECCC
T ss_pred             CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeE-EEEeecCC
Confidence            4568899999874 4577888999999988764221     124899999999999999999999998866 88888766


Q ss_pred             H
Q 031896           80 M   80 (151)
Q Consensus        80 ~   80 (151)
                      .
T Consensus       166 k  166 (167)
T 2cjk_A          166 R  166 (167)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.08  E-value=8.3e-06  Score=55.97  Aligned_cols=75  Identities=13%  Similarity=0.102  Sum_probs=60.1

Q ss_pred             cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      ...+.|.|-++|+.. .+.|.+.|++||+|.++....   ....+..|+|.+..+|++||. .||..|.|.. |-|....
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~V~~a~   91 (103)
T 2d9p_A           13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP-LYVALAQ   91 (103)
T ss_dssp             SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB-CEEEECS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE-EEEEEec
Confidence            356789999999885 456777899999999876421   124689999999999999999 5999998865 8888876


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus        92 ~   92 (103)
T 2d9p_A           92 R   92 (103)
T ss_dssp             S
T ss_pred             c
Confidence            5

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=98.08  E-value=1.9e-05  Score=54.39  Aligned_cols=72  Identities=14%  Similarity=0.222  Sum_probs=56.6

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-++|+..+ +.|.+.|++||.|.+....  +++  ..+..|+|.+..+|++||.. ||..|.|.. |-|...
T Consensus        28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~a  105 (107)
T 3ulh_A           28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRP-MNIQLV  105 (107)
T ss_dssp             CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE-EEEEEe
Confidence            467899999999854 5678889999999876531  222  35899999999999999995 999998855 666543

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.08  E-value=2.3e-05  Score=52.57  Aligned_cols=73  Identities=11%  Similarity=0.065  Sum_probs=58.5

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+-|.|-|+|... .+.|.+.|++| .|++....  .++  ..+-.|.|.+..+|++||..||..|.|.. |-|.+..+
T Consensus         9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~-i~v~~a~~   86 (91)
T 2dgw_A            9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRY-IEVFREKS   86 (91)
T ss_dssp             CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEE-EEEEEESS
T ss_pred             CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcE-EEEEECCc
Confidence            46778999999884 45778889999 88876431  122  34999999999999999999999999976 88888765

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=98.08  E-value=5.9e-06  Score=56.93  Aligned_cols=74  Identities=14%  Similarity=0.026  Sum_probs=56.7

Q ss_pred             cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCC------CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896            4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPR------DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP   76 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~------~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp   76 (151)
                      ...+-|.|-|+|.+.. +.|.+.|++|| |.+......      ...+..|.|.+..+|++||..||..|+|.. |-|..
T Consensus        17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~-l~V~~   94 (100)
T 2j76_E           17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRR-IRVDV   94 (100)
T ss_dssp             ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBC-CCCEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeE-EEEEe
Confidence            3457788999998744 46788899999 988764211      246999999999999999999999998865 77776


Q ss_pred             CCh
Q 031896           77 LDP   79 (151)
Q Consensus        77 ~d~   79 (151)
                      .++
T Consensus        95 a~~   97 (100)
T 2j76_E           95 ADQ   97 (100)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            654

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=98.07  E-value=4.1e-05  Score=54.72  Aligned_cols=70  Identities=14%  Similarity=0.167  Sum_probs=56.3

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEE
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVK   75 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVk   75 (151)
                      ..+-|.|-|+|+. ..+.|.+.|++||.|.+.....     ....+..|+|.++.+|++||. .||..|.|.. |-|.
T Consensus        62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~  138 (140)
T 2ku7_A           62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT-IRVN  138 (140)
T ss_dssp             SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE-EEEE
T ss_pred             CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEE
Confidence            4678899999988 4567888899999999876421     235799999999999999995 6999998865 5554

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=98.07  E-value=2.3e-05  Score=57.76  Aligned_cols=74  Identities=19%  Similarity=0.248  Sum_probs=60.2

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-++|.. ..+.|.++|++||.|+++....   ++  ..+..|+|.+..+|++||. .||..|.|.. |-|.+.
T Consensus        38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a  116 (156)
T 1h2v_Z           38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRI-IRTDWD  116 (156)
T ss_dssp             TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEE-CEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE-EEEEEC
Confidence            5678999999988 5568888999999999876411   11  2599999999999999999 4999998855 888887


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus       117 ~~  118 (156)
T 1h2v_Z          117 AG  118 (156)
T ss_dssp             SC
T ss_pred             CC
Confidence            65

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.07  E-value=5.3e-05  Score=54.03  Aligned_cols=74  Identities=18%  Similarity=0.084  Sum_probs=60.2

Q ss_pred             CcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--CC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECChH
Q 031896            6 SFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--PR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus         6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~~   80 (151)
                      .+.|.|-|.|.+.+ +.|.++|++| .|.++...  +.  ...+-.|+|.++.+|++||.+||..|+|.. |-|.++.+.
T Consensus        16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~-i~V~~a~~~   93 (109)
T 2dnn_A           16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRY-VEVSPATER   93 (109)
T ss_dssp             HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEE-EEEEECCHH
T ss_pred             CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeE-EEEEECCcc
Confidence            45789999999855 5788889999 78766431  11  246999999999999999999999999986 899999875


Q ss_pred             H
Q 031896           81 Q   81 (151)
Q Consensus        81 ~   81 (151)
                      +
T Consensus        94 ~   94 (109)
T 2dnn_A           94 Q   94 (109)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=98.07  E-value=3.1e-05  Score=51.12  Aligned_cols=65  Identities=15%  Similarity=0.228  Sum_probs=54.8

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhc----C-------cEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeE
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKC----G-------VILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVL   70 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~----G-------~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~   70 (151)
                      ..+-|.|-+.|+.. .+.+.++|++|    |       .|.+... .....+-.|.|.++.+|++||..||..+.|..
T Consensus         5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~   81 (87)
T 2hzc_A            5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS   81 (87)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-CSSSSEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-cCCCcEEEEEcCCHHHHHHHHhcCCCEECCeE
Confidence            34678899999885 45788889999    8       8988775 34578999999999999999999999999865

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=98.06  E-value=3.1e-05  Score=55.62  Aligned_cols=73  Identities=15%  Similarity=0.176  Sum_probs=57.6

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-|+|+. ..+.+.+.|++||.|.+.....   ++  ..+..|+|.+..+|++||. .||..++|.. |-|...
T Consensus        86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-i~v~~a  164 (166)
T 3md3_A           86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP-LRINWA  164 (166)
T ss_dssp             TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE-CEEEES
T ss_pred             CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE-EEEEec
Confidence            4567899999988 5567888999999999875421   12  3479999999999999998 6999998865 767654


Q ss_pred             C
Q 031896           78 D   78 (151)
Q Consensus        78 d   78 (151)
                      +
T Consensus       165 ~  165 (166)
T 3md3_A          165 A  165 (166)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=98.05  E-value=1.9e-05  Score=57.82  Aligned_cols=74  Identities=14%  Similarity=0.140  Sum_probs=60.3

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+-|.|-++|++.+ +.+.+.|++||+|.+.........+-.|+|.+..+|++||. .||..|.|.- |-|....+
T Consensus        72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a~~  147 (150)
T 2i2y_A           72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCR-VRVELSNG  147 (150)
T ss_dssp             TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSC-CEEEECCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE-EEEEEcCC
Confidence            457788999999854 46788899999999887533336799999999999999998 6999998865 77777654

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.05  E-value=1.5e-05  Score=54.26  Aligned_cols=73  Identities=14%  Similarity=0.142  Sum_probs=56.5

Q ss_pred             CcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECCh
Q 031896            6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~   79 (151)
                      .+.|.|-++|+.. .+.+.+.|++||.|...........+-.|.|.+..+|++|+.. ||..|.|.. |-|....+
T Consensus        19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~V~~a~~   93 (97)
T 2e5j_A           19 AADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT-LRVALARQ   93 (97)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC-CEEEECCC
T ss_pred             CCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE-EEEEEcCC
Confidence            5688999999874 4567788999999842211113467999999999999999965 999998865 77877654

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=98.04  E-value=2.8e-05  Score=53.01  Aligned_cols=73  Identities=15%  Similarity=0.205  Sum_probs=55.8

Q ss_pred             cEEEEecCCCCCH-HHHHHHHhhcC-cEEeeccC-----CCCCCeEEEEcCCHHHHHHHHHh--CCceecCeEEEEEEEC
Q 031896            7 FLIVPFRFPPADT-NLVLREFEKCG-VILKHVPG-----PRDANWMHILYQNRSDAQKALSK--NGMQINGVLIVGVKPL   77 (151)
Q Consensus         7 ~wVtVFGfp~~~~-~~Vl~~F~~~G-~I~~~~~~-----p~~~NWi~i~y~~~~~A~rAL~~--nG~ii~g~~mIGVkp~   77 (151)
                      +-|.|-|.|++.+ +.|.+.|++|| +|.++...     .....+-.|+|.++.+|++||..  ||..+.|.- |-|...
T Consensus         2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~-i~V~~a   80 (91)
T 2lxi_A            2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK-VSMHYS   80 (91)
T ss_dssp             CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE-EEEECC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE-EEEEEc
Confidence            4688999999855 46778899999 78776431     12347899999999999999975  567788865 888776


Q ss_pred             ChH
Q 031896           78 DPM   80 (151)
Q Consensus        78 d~~   80 (151)
                      ++.
T Consensus        81 ~~~   83 (91)
T 2lxi_A           81 DPK   83 (91)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            653

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.04  E-value=4e-05  Score=52.90  Aligned_cols=74  Identities=11%  Similarity=0.092  Sum_probs=59.5

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hC------CceecCeEE
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KN------GMQINGVLI   71 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~n------G~ii~g~~m   71 (151)
                      ..+.|.|-++|+. ..+.|.++|++||.|.++....     ....+..|+|.+..+|++||. .|      |..|.|.. 
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~-   92 (111)
T 1x4h_A           14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ-   92 (111)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE-
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE-
Confidence            4677899999988 4557788899999999876421     135799999999999999998 47      99998865 


Q ss_pred             EEEEECCh
Q 031896           72 VGVKPLDP   79 (151)
Q Consensus        72 IGVkp~d~   79 (151)
                      |-|.+..+
T Consensus        93 l~v~~a~~  100 (111)
T 1x4h_A           93 LKVDLAVT  100 (111)
T ss_dssp             EEEECCCC
T ss_pred             EEEEECCC
Confidence            88888765

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=98.04  E-value=1.4e-05  Score=53.88  Aligned_cols=71  Identities=18%  Similarity=0.122  Sum_probs=55.0

Q ss_pred             CcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC---CC--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            6 SFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG---PR--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~---p~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      .+.|.|-++|.+.+ +.|.+.|++||.|.+....   .+  ...+..|+|.++.+|++||. .||..|.|.. |-|..+
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~-l~v~~a   92 (95)
T 2ek1_A           15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK-VKLSGP   92 (95)
T ss_dssp             CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE-EEEEec
Confidence            46789999998854 5688889999998754321   11  23689999999999999998 5999998865 666554

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.03  E-value=3.2e-05  Score=53.83  Aligned_cols=75  Identities=15%  Similarity=0.137  Sum_probs=58.6

Q ss_pred             cCCcEEEEecCCCCC-HHHHHHHHhhcCcEE--------eeccC---C--CCCCeEEEEcCCHHHHHHHHH-hCCceecC
Q 031896            4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVIL--------KHVPG---P--RDANWMHILYQNRSDAQKALS-KNGMQING   68 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~--------~~~~~---p--~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g   68 (151)
                      ...+.|.|-++|... .+.|.+.|++||.|.        ++...   .  ....+..|+|.+..+|++||. .||..|.|
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g   92 (113)
T 2cpe_A           13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG   92 (113)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence            456789999999874 457888899999998        23321   1  124699999999999999998 59999988


Q ss_pred             eEEEEEEECCh
Q 031896           69 VLIVGVKPLDP   79 (151)
Q Consensus        69 ~~mIGVkp~d~   79 (151)
                      .. |-|....+
T Consensus        93 ~~-l~V~~a~~  102 (113)
T 2cpe_A           93 SK-LKVSLARK  102 (113)
T ss_dssp             EE-CEEECSSC
T ss_pred             CE-EEEEECCC
Confidence            55 78877655

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=98.03  E-value=1.4e-05  Score=53.44  Aligned_cols=74  Identities=18%  Similarity=0.224  Sum_probs=58.2

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+.|.|-++|... .+.+.+.|++||.|.+..... +  ...+..|+|.+..+|++|+. .||..+.|.. |-|....+
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~-l~v~~a~~   85 (92)
T 2dgv_A            7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE-IDVRIDRN   85 (92)
T ss_dssp             SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC-CCCEECSC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE-EEEEEcCC
Confidence            46789999999884 457788899999999875421 1  23689999999999999999 5999998865 66666543

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=98.02  E-value=1.8e-05  Score=55.53  Aligned_cols=74  Identities=18%  Similarity=0.169  Sum_probs=58.2

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC--C---CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP--R---DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p--~---~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-|+|+. ..+.|.+.|++||.|.+.....  .   ...+..|.|.+..+|++|+. .||..|.|.. |-|...
T Consensus        25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~-l~V~~a  103 (108)
T 2jrs_A           25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP-MKVGHV  103 (108)
T ss_dssp             SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC-CEEECS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEEc
Confidence            4577899999987 4557788899999998875311  1   13589999999999999997 6999998866 777765


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus       104 ~~  105 (108)
T 2jrs_A          104 TE  105 (108)
T ss_dssp             CS
T ss_pred             cc
Confidence            44

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=98.01  E-value=2e-05  Score=54.09  Aligned_cols=75  Identities=21%  Similarity=0.158  Sum_probs=58.3

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHH-hCCceecCe--EEEEEEE
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALS-KNGMQINGV--LIVGVKP   76 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~--~mIGVkp   76 (151)
                      ..+.|.|-++|... .+.|.+.|++||.|.++...  +++  ..+..|+|.+..+|++||. .||..+.|.  -.|-|.+
T Consensus        14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~   93 (105)
T 2dnh_A           14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF   93 (105)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence            45778999999884 55778889999999987532  122  3689999999999999997 699998773  3377777


Q ss_pred             CCh
Q 031896           77 LDP   79 (151)
Q Consensus        77 ~d~   79 (151)
                      .++
T Consensus        94 a~~   96 (105)
T 2dnh_A           94 ADT   96 (105)
T ss_dssp             SCS
T ss_pred             Ccc
Confidence            765

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=98.00  E-value=4.6e-05  Score=55.88  Aligned_cols=74  Identities=15%  Similarity=0.194  Sum_probs=59.5

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-|.|++. .+.+.+.|++||+|.+.....     ....+-.|+|.+..+|++||.. ||..|.|.. |-|...
T Consensus        69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a  147 (158)
T 2kn4_A           69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE-LRVQMA  147 (158)
T ss_dssp             BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE-EEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE-EEEEEC
Confidence            35788999999985 456788899999999876421     1235899999999999999975 999998866 888877


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      ++
T Consensus       148 ~~  149 (158)
T 2kn4_A          148 RY  149 (158)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=98.00  E-value=4.7e-05  Score=55.07  Aligned_cols=74  Identities=16%  Similarity=0.200  Sum_probs=59.5

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      +.+.|.|-|+|++ ..+.+.+.|++||.|.+.....   +  ...+..|+|.++.+|++|+. .||..+.|.. |-|.+.
T Consensus         2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~-l~v~~~   80 (168)
T 1b7f_A            2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKR-LKVSYA   80 (168)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEEC
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcE-EEEEec
Confidence            4678999999998 4557888899999999876421   1  13699999999999999997 7999998865 778776


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus        81 ~~   82 (168)
T 1b7f_A           81 RP   82 (168)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.00  E-value=1.7e-05  Score=53.37  Aligned_cols=73  Identities=14%  Similarity=0.138  Sum_probs=57.0

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCC-ceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNG-MQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG-~ii~g~~mIGVkp~d~   79 (151)
                      ..+-|.|-++|++ ..+.+.++|++||.|++...- ....+..|+|.+..+|++||. .|| ..+.|.. |-|.+..+
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~-l~v~~a~~   82 (93)
T 2cqh_A            7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKI-MEVDYSVS   82 (93)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEE-CEEEECCC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEE-EEEEEccC
Confidence            4567889999998 455678889999995543321 235689999999999999997 699 8998855 88888765

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=97.99  E-value=2.7e-05  Score=54.57  Aligned_cols=70  Identities=16%  Similarity=0.208  Sum_probs=55.3

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEE
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVK   75 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVk   75 (151)
                      ..+.|.|-|+|++ ..+.+.+.|++||+|+++....     ....+..|+|.+..+|++||. .||..|.|.. |-|.
T Consensus        39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~V~  115 (118)
T 2khc_A           39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR-LKVQ  115 (118)
T ss_dssp             CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE-CCEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE-EEEE
Confidence            4578899999998 4557778899999999876421     124699999999999999998 5999998865 4444

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.99  E-value=6.9e-05  Score=52.44  Aligned_cols=75  Identities=17%  Similarity=0.099  Sum_probs=58.2

Q ss_pred             cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCC-----CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEEC
Q 031896            4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPR-----DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPL   77 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~-----~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~   77 (151)
                      ...+-|.|-++|++. .+.|.++|++||.|.++.....     ...+..|+|.+..+|++||......|.|.. |-|...
T Consensus        15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~-l~V~~a   93 (116)
T 2cqd_A           15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRK-ANVNLA   93 (116)
T ss_dssp             CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEE-CEEEES
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEE-EEEEEc
Confidence            356789999999984 4577888999999998764221     235999999999999999998444888855 788776


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus        94 ~~   95 (116)
T 2cqd_A           94 YL   95 (116)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.99  E-value=4.4e-05  Score=52.65  Aligned_cols=74  Identities=19%  Similarity=0.275  Sum_probs=58.7

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCc-EEeeccCC------CCCCeEEEEcCCHHHHHHHHHh--CC-ceecCeEEEE
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGV-ILKHVPGP------RDANWMHILYQNRSDAQKALSK--NG-MQINGVLIVG   73 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~-I~~~~~~p------~~~NWi~i~y~~~~~A~rAL~~--nG-~ii~g~~mIG   73 (151)
                      ..+-|.|-|+|.. ..+.+.++|++||. |.+.....      ....+-.|+|.++.+|++|+..  || ..+.|.. |-
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~-l~   85 (109)
T 2dis_A            7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ-IA   85 (109)
T ss_dssp             CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC-CE
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe-EE
Confidence            4567899999987 45678889999998 98875421      2356999999999999999996  55 8898865 78


Q ss_pred             EEECCh
Q 031896           74 VKPLDP   79 (151)
Q Consensus        74 Vkp~d~   79 (151)
                      |...++
T Consensus        86 V~~a~~   91 (109)
T 2dis_A           86 VDWAEP   91 (109)
T ss_dssp             EEESCS
T ss_pred             EEEcCC
Confidence            888765

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=97.99  E-value=3.8e-05  Score=57.06  Aligned_cols=74  Identities=14%  Similarity=0.161  Sum_probs=59.4

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC--C-CC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG--P-RD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~--p-~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      ..+-|.|-|+|++ ..+.|.+.|++||.|+++...  + ++  ..+-.|.|.+..+|++||..||..+.|.. |-|.+..
T Consensus        12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~-l~v~~~~   90 (196)
T 1l3k_A           12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV-VEPKRAV   90 (196)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEE-CEEEECC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEE-eeeeccc
Confidence            4578999999998 455788889999999886531  1 12  34899999999999999999999998866 7787765


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus        91 ~   91 (196)
T 1l3k_A           91 S   91 (196)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=6.5e-05  Score=51.21  Aligned_cols=73  Identities=22%  Similarity=0.240  Sum_probs=58.4

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCC--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPR--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+.|.|-++|+... +.|.+.|++||.|.-... .+  ...+..|+|.+..+|++||. .||..|.|.. |-|...++
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~a~~   90 (101)
T 2fc9_A           14 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA-IRLELQGP   90 (101)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEE-EEEEECSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeE-EEEEEcCC
Confidence            467899999999854 467788899999943322 22  35799999999999999999 7999998865 88888766

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=97.98  E-value=4.1e-05  Score=60.94  Aligned_cols=74  Identities=22%  Similarity=0.246  Sum_probs=60.6

Q ss_pred             CCcEEEEecCCCC--CHHHHHHHHhhcCcEEeeccCCC------CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896            5 SSFLIVPFRFPPA--DTNLVLREFEKCGVILKHVPGPR------DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP   76 (151)
Q Consensus         5 ~~~wVtVFGfp~~--~~~~Vl~~F~~~G~I~~~~~~p~------~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp   76 (151)
                      ..+.|.|-|.|++  ..+.|.+.|++||.|.+......      ...+..|+|.+..+|++||..||..|.|.. |-|..
T Consensus       209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~-i~V~~  287 (292)
T 2ghp_A          209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNRE-ISVSL  287 (292)
T ss_dssp             TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEE-EEEEE
T ss_pred             CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcE-EEEEE
Confidence            4578999999988  55678889999999998764221      246899999999999999988999998865 88877


Q ss_pred             CCh
Q 031896           77 LDP   79 (151)
Q Consensus        77 ~d~   79 (151)
                      ..+
T Consensus       288 a~~  290 (292)
T 2ghp_A          288 ADK  290 (292)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            654

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=97.97  E-value=3.9e-05  Score=55.22  Aligned_cols=74  Identities=19%  Similarity=0.134  Sum_probs=59.3

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC--C---CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP--R---DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p--~---~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      ..+-|.|-|+|.+.. +.|.+.|++||+|.++....  .   ...+..|+|.+..+|++||. .||..|.|.. |-|...
T Consensus        41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a  119 (139)
T 1u6f_A           41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR-LKVALA  119 (139)
T ss_dssp             TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE-EEEEES
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE-EEEEEC
Confidence            456789999999854 47888999999999875311  1   13589999999999999999 5999998865 888887


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus       120 ~~  121 (139)
T 1u6f_A          120 AS  121 (139)
T ss_dssp             SC
T ss_pred             CC
Confidence            65

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=97.97  E-value=2.1e-05  Score=59.15  Aligned_cols=74  Identities=14%  Similarity=0.130  Sum_probs=61.8

Q ss_pred             CCcEEEEecCCC-C-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPP-A-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~-~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      +.+-|.|-|+|+ . ..+.+.+.|++||.|.++........+..|.|.+..+|++||. .||..+.|.. |-|.+..+
T Consensus         2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~-l~v~~a~~   78 (198)
T 1qm9_A            2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP-IRITLSKH   78 (198)
T ss_dssp             CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC-CEEEECCC
T ss_pred             CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE-EEEEEecC
Confidence            567899999998 5 6678889999999999886533445789999999999999997 8999998865 88887654

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=97.97  E-value=1.3e-05  Score=58.28  Aligned_cols=74  Identities=20%  Similarity=0.231  Sum_probs=58.0

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-|+|+. ....|.+.|++||.|+++....     ....+..|+|.+..+|++||. .||..|.|.. |-|...
T Consensus        45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~-l~V~~a  123 (129)
T 2kxn_B           45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR-IRVDFS  123 (129)
T ss_dssp             CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC-CEESCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEe
Confidence            4566888999998 4557778899999999876421     234699999999999999999 5999998865 666655


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus       124 ~~  125 (129)
T 2kxn_B          124 IT  125 (129)
T ss_dssp             SS
T ss_pred             cC
Confidence            43

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.96  E-value=8.1e-06  Score=57.04  Aligned_cols=73  Identities=15%  Similarity=0.152  Sum_probs=56.9

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeecc--CCCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVP--GPRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~--~p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+.|.|-++|.+.+ +.|.++|++|| |+++..  .+++  ..+-.|.|.++.+|++||.+||..|.|.. |-|.+..+
T Consensus        14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~-i~V~~~~~   91 (102)
T 1wez_A           14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRY-VELFLNST   91 (102)
T ss_dssp             SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSC-CEEEEECC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcE-EEEEECCC
Confidence            457789999999855 56777889999 445432  1222  24899999999999999999999999876 77877654

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=97.95  E-value=1.6e-05  Score=54.27  Aligned_cols=71  Identities=13%  Similarity=0.100  Sum_probs=57.8

Q ss_pred             cCCcEEEEecCCC-C-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            4 ISSFLIVPFRFPP-A-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         4 ~~~~wVtVFGfp~-~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      ...+-|.|-++|+ . ..+.+.++|++||.|.+... +  ..+..|+|.+..+|++|+. .||..+.|.. |-|.+..
T Consensus         8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i-~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~V~~a~   81 (96)
T 2kvi_A            8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-K--NAFGFIQFDNPQSVRDAIECESQEMNFGKK-LILEVSS   81 (96)
T ss_dssp             -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE-E--TTEEEEEESCHHHHHHHHHHHTCSSCBTTT-BCEEEEE
T ss_pred             CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-e--CCEEEEEECCHHHHHHHHHHcCCCeeCCcE-EEEEEcC
Confidence            4567889999997 5 66678889999999998875 2  5799999999999999999 5999998765 5565543

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=97.95  E-value=5.2e-05  Score=54.48  Aligned_cols=74  Identities=19%  Similarity=0.208  Sum_probs=58.4

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      +.+-|.|-|+|++ ..+.+.+.|++||.|.+.....   ++  ..+..|+|.++.+|++||. .||..+.|.. |-|.+.
T Consensus         1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~-l~v~~~   79 (167)
T 1fxl_A            1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT-IKVSYA   79 (167)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEEC
T ss_pred             CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCce-EEEEec
Confidence            3567889999998 5567888899999999875311   12  2689999999999999998 6999998855 777776


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus        80 ~~   81 (167)
T 1fxl_A           80 RP   81 (167)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=97.94  E-value=6.7e-05  Score=55.00  Aligned_cols=74  Identities=18%  Similarity=0.161  Sum_probs=59.3

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+.|.|-|.|++. .+.+.++|++||+|..........++..|+|.+..+|++||. .||..|+|.. |-|....+
T Consensus        98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-i~v~~a~~  173 (175)
T 1fje_B           98 AARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS-VSLYYTGE  173 (175)
T ss_dssp             GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE-EEEEECSS
T ss_pred             cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE-EEEEecCC
Confidence            35678999999874 457888899999998772111345799999999999999999 5999999866 88877654

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=97.94  E-value=2.4e-05  Score=52.85  Aligned_cols=74  Identities=18%  Similarity=0.161  Sum_probs=58.6

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+.|.|-+.|... .+.+.+.|++||.|...........+..|+|.+..+|++||. .||..|.|.. |-|.+..+
T Consensus        15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a~~   90 (96)
T 1fjc_A           15 AARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS-VSLYYTGE   90 (96)
T ss_dssp             GGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE-EEEEECSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE-EEEEEcCC
Confidence            35678999999884 457788899999998762111124699999999999999999 6999998865 88888755

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=97.94  E-value=2.8e-05  Score=58.11  Aligned_cols=74  Identities=15%  Similarity=0.150  Sum_probs=58.6

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-|+|+.. ...|.++|++||.|.++....   +  ...+..|.|.+..+|++||. .||..|.|.. |-|.++
T Consensus        71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~a  149 (165)
T 1rk8_A           71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT-IQVDWC  149 (165)
T ss_dssp             -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEES
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEe
Confidence            45679999999884 456778899999999875421   1  14799999999999999997 5999998865 888887


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus       150 ~~  151 (165)
T 1rk8_A          150 FV  151 (165)
T ss_dssp             EE
T ss_pred             cC
Confidence            54

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=97.94  E-value=4.6e-05  Score=51.91  Aligned_cols=71  Identities=14%  Similarity=0.110  Sum_probs=54.8

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEe--------eccC--C-CC--CCeEEEEcCCHHHHHHHHH-hCCceecCe
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILK--------HVPG--P-RD--ANWMHILYQNRSDAQKALS-KNGMQINGV   69 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~--------~~~~--p-~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~   69 (151)
                      ..+.|.|-|.|.+. .+.+.+.|++||.|.+        ....  + ++  ..+-.|.|.+..+|++|++ .||..+.|.
T Consensus        12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~   91 (99)
T 2la6_A           12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN   91 (99)
T ss_dssp             CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence            46778999999984 4577888999999987        4321  1 11  3599999999999999997 699999886


Q ss_pred             EEEEEEE
Q 031896           70 LIVGVKP   76 (151)
Q Consensus        70 ~mIGVkp   76 (151)
                      . |-|..
T Consensus        92 ~-l~V~~   97 (99)
T 2la6_A           92 P-IKVSF   97 (99)
T ss_dssp             B-CEEEE
T ss_pred             E-EEEEe
Confidence            5 55554

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=97.92  E-value=3.2e-05  Score=58.30  Aligned_cols=74  Identities=18%  Similarity=0.119  Sum_probs=58.6

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCC---C--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPR---D--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~---~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      ..+-|.|-++|.+. .+.|.++|++||.|.+......   +  ..+..|+|.+..+|++||. .||..|+|.. |-|.+.
T Consensus       124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~-i~V~~a  202 (216)
T 2qfj_A          124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY-LRVGKA  202 (216)
T ss_dssp             TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSB-CEEEEC
T ss_pred             CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcE-EEEEEe
Confidence            34678999999874 5578888999999998754211   1  3589999999999999999 5999998866 777765


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus       203 ~~  204 (216)
T 2qfj_A          203 VT  204 (216)
T ss_dssp             SS
T ss_pred             cC
Confidence            54

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.91  E-value=3.4e-05  Score=52.28  Aligned_cols=72  Identities=18%  Similarity=0.129  Sum_probs=55.4

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeecc---CCC--CCCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVP---GPR--DANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~---~p~--~~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-++|... .+.|.+.|++||.|.+...   ..+  ...+..|+|.++.+|++|| ..||..|.|.. |-|...
T Consensus        14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~-l~V~~a   92 (98)
T 2cqp_A           14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK-VKLVLG   92 (98)
T ss_dssp             SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE-CEEEES
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE-EEEEEc
Confidence            45678999999885 4567888999999864321   111  2478999999999999999 56999998865 777664

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.90  E-value=1.3e-05  Score=52.99  Aligned_cols=66  Identities=15%  Similarity=0.153  Sum_probs=52.0

Q ss_pred             CCcEEEEecCCCCCHH-HHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeE
Q 031896            5 SSFLIVPFRFPPADTN-LVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVL   70 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~   70 (151)
                      ..+.|.|-++|+.... .+.+.|++||.|.+.....     ....+..|.|.++.+|++|+. .||..+.|..
T Consensus         4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   76 (85)
T 1x4e_A            4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM   76 (85)
T ss_dssp             CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEE
Confidence            4578899999998554 6667789999999875311     124689999999999999999 6998887654

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=97.90  E-value=8.2e-05  Score=57.28  Aligned_cols=74  Identities=19%  Similarity=0.190  Sum_probs=59.3

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECChH
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~~   80 (151)
                      .+.|.|-+.|+. ....+.+.|++||+|++.....   ....+..|+|.+..+|++||. .||..|+|.. |-|.+..+.
T Consensus       103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~-i~V~~a~~~  181 (213)
T 4f02_A          103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK-VFVGRFKSR  181 (213)
T ss_dssp             TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEECCCH
T ss_pred             cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEE-EEEEEcCCC
Confidence            456889999998 4557778899999999865311   124688999999999999997 5999999865 889988664

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.90  E-value=4.5e-05  Score=51.73  Aligned_cols=66  Identities=20%  Similarity=0.244  Sum_probs=52.3

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEE-eeccCC---C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeE
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVIL-KHVPGP---R--DANWMHILYQNRSDAQKALS-KNGMQINGVL   70 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~-~~~~~p---~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~   70 (151)
                      ..+-|.|-++|+. ..+.+.+.|++||.|+ +.....   +  ...+-.|+|.++.+|++|+. .||..+.|..
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   81 (99)
T 2div_A            8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT   81 (99)
T ss_dssp             SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence            4567889999998 4557788899999998 664311   1  12689999999999999999 5999998754

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=97.89  E-value=7.3e-05  Score=53.65  Aligned_cols=71  Identities=21%  Similarity=0.218  Sum_probs=56.4

Q ss_pred             EEEEecCCCCC-HHHHHHHHhhcCcEEeeccC--CC--CCCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEECCh
Q 031896            8 LIVPFRFPPAD-TNLVLREFEKCGVILKHVPG--PR--DANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         8 wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~--p~--~~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp~d~   79 (151)
                      -|.|-|+|++. .+.+.+.|++||.|.+....  +.  ...+..|+|.+..+|++|| ..||..+.|.. |-|.+..+
T Consensus         2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~-i~v~~~~~   78 (166)
T 3md3_A            2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNI-VKINWAFQ   78 (166)
T ss_dssp             EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEECCC
T ss_pred             EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCe-eEEEEcCC
Confidence            47888999884 45688889999999887531  11  2358999999999999999 78999998865 77877654

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=97.88  E-value=3.7e-05  Score=57.22  Aligned_cols=75  Identities=15%  Similarity=0.114  Sum_probs=60.3

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-|+|.. ..+.|.+.|++||.|.+.....   ++  ..+..|+|.++.+|++||.. ||..|+|.. |-|.+.
T Consensus       113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a  191 (198)
T 2yh0_A          113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK-LLVQRA  191 (198)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEE-CEEEES
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEEC
Confidence            4578999999987 5567888999999998775321   11  46899999999999999995 999998865 888887


Q ss_pred             ChH
Q 031896           78 DPM   80 (151)
Q Consensus        78 d~~   80 (151)
                      .+.
T Consensus       192 ~~~  194 (198)
T 2yh0_A          192 SVG  194 (198)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            653

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=97.87  E-value=3.4e-05  Score=57.92  Aligned_cols=72  Identities=17%  Similarity=0.096  Sum_probs=58.3

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcC-cEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceec-CeEEEEEEECC
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCG-VILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQIN-GVLIVGVKPLD   78 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G-~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~-g~~mIGVkp~d   78 (151)
                      .+.|.|.|.|.. ..+.+.+.|++|| .|.+....+...++..|+|.+..+|++||. .||..++ |.. |-|....
T Consensus       120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~-l~v~~a~  195 (198)
T 1qm9_A          120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHH-LRVSFSK  195 (198)
T ss_dssp             CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCS-CCEEEEC
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCe-EEEEeec
Confidence            567889999987 4557788899999 998877545567899999999999999999 7999998 543 5555443

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=97.86  E-value=7.9e-05  Score=57.99  Aligned_cols=73  Identities=16%  Similarity=0.096  Sum_probs=59.9

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcC-cEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceec-CeEEEEEEECCh
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCG-VILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQIN-GVLIVGVKPLDP   79 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G-~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~-g~~mIGVkp~d~   79 (151)
                      .+-|.|-++|+. ..+.+.+.|++|| +|.+....+...++..|+|.+..+|++||. .||..++ |.. |-|....+
T Consensus       151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~-l~v~~a~~  227 (229)
T 2adc_A          151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHH-LRVSFSKS  227 (229)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCB-CEEEECSS
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCe-EEEEEecC
Confidence            567899999998 4567788899999 999887645567899999999999999999 7999998 544 77766543

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=97.85  E-value=6.4e-05  Score=58.52  Aligned_cols=74  Identities=14%  Similarity=0.130  Sum_probs=61.3

Q ss_pred             CCcEEEEecCCC-C-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPP-A-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~-~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+-|.|-++|+ . ..+.|.+.|++||.|.++....+...+..|+|.+..+|++||. .||..+.|.. |-|.+..+
T Consensus        33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~-l~v~~a~~  109 (229)
T 2adc_A           33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP-IRITLSKH  109 (229)
T ss_dssp             CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSB-CEEECCSC
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeE-EEEEEecC
Confidence            457899999998 5 6678888999999999887544446789999999999999996 8999998865 77777643

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=97.85  E-value=7.7e-05  Score=52.66  Aligned_cols=60  Identities=23%  Similarity=0.241  Sum_probs=49.1

Q ss_pred             HHHHHHHhhcCcEEeeccC-C------CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECChH
Q 031896           20 NLVLREFEKCGVILKHVPG-P------RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus        20 ~~Vl~~F~~~G~I~~~~~~-p------~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~~   80 (151)
                      +.|.++|++||+|++.... +      .....+.|+|.++.+|++|+. .||+.++|.. |-|..+++.
T Consensus        30 ~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~-i~v~~~~~~   97 (105)
T 3v4m_A           30 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRV-VVTKYCDPD   97 (105)
T ss_dssp             HHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEEECHH
T ss_pred             HHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCE-EEEEEeCHH
Confidence            5799999999999988631 1      235799999999999999995 5999999976 777777663

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=97.84  E-value=5.3e-05  Score=54.43  Aligned_cols=65  Identities=17%  Similarity=0.193  Sum_probs=52.7

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHH-hCCceecCe
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALS-KNGMQINGV   69 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~   69 (151)
                      ..+.|.|-|.|+. ..+.+.+.|++||.|.+.....   ++  ..+..|+|.+..+|++|++ .||..+.|.
T Consensus        87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~  158 (167)
T 1fxl_A           87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA  158 (167)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred             CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence            4567899999987 4567888899999998765311   12  4689999999999999999 699999885

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=97.84  E-value=0.00013  Score=52.25  Aligned_cols=73  Identities=11%  Similarity=0.032  Sum_probs=57.9

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcC-cEEeeccC-CCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCG-VILKHVPG-PRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G-~I~~~~~~-p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      ..+-|.|-+.|.+.. +.+.+.|++|| +|...... .....+-.|.|.++.+|++|+. .||..|.|.. |-|....
T Consensus        27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~-i~V~~a~  103 (111)
T 2jvr_A           27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSV-ITVERDD  103 (111)
T ss_dssp             CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE-EEEEESC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE-EEEEECC
Confidence            456788999999854 57777899999 88876542 1245799999999999999996 6999999976 8887754

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=97.83  E-value=4.5e-05  Score=55.70  Aligned_cols=74  Identities=15%  Similarity=0.182  Sum_probs=58.5

Q ss_pred             CCcEEEEecCCCCCHH-HHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPADTN-LVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-|+|+..+. .|.+.|++||.|+++....     ....+..|+|.+..+|++||. .||..|.|.. |-|...
T Consensus        46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~-l~V~~a  124 (135)
T 2lea_A           46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE-LRVQMA  124 (135)
T ss_dssp             GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC-CEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEEC
Confidence            4567899999998655 6777899999998876421     123489999999999999997 5999998865 777776


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus       125 ~~  126 (135)
T 2lea_A          125 RY  126 (135)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=97.83  E-value=0.00012  Score=57.88  Aligned_cols=71  Identities=11%  Similarity=0.143  Sum_probs=57.5

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceec-CeEEEEEEE
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQIN-GVLIVGVKP   76 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~-g~~mIGVkp   76 (151)
                      ..+.|.|-+.|.. ..+.|.+.|++||.|.+....+....+..|+|.+..+|++||. .||..|. |.. |-|..
T Consensus       206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~-l~v~~  279 (282)
T 3pgw_A          206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNA-MKISF  279 (282)
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCE-EEEEE
Confidence            4567999999998 4557888999999999887544344799999999999999999 6999998 643 65554

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=97.80  E-value=6.3e-05  Score=54.72  Aligned_cols=71  Identities=14%  Similarity=0.103  Sum_probs=55.9

Q ss_pred             CcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896            6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus         6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      .+.|.|-|+|+.. .+.+.+.|++||.|.+.....   ++  ..+..|+|.++.+|++|+.. ||..++|.. |-|.+.
T Consensus        94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~V~~A  171 (172)
T 2g4b_A           94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK-LLVQRA  171 (172)
T ss_dssp             TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEE-CEEEEC
T ss_pred             CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeE-EEEEeC
Confidence            4678899999874 567888899999998775321   11  35899999999999999995 999998855 766653

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=97.80  E-value=2.1e-05  Score=53.01  Aligned_cols=71  Identities=11%  Similarity=-0.004  Sum_probs=52.4

Q ss_pred             EEEEecCCCCCH-HHHHHHHhhcC--cEEeeccC--C-CC--CCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEECC
Q 031896            8 LIVPFRFPPADT-NLVLREFEKCG--VILKHVPG--P-RD--ANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         8 wVtVFGfp~~~~-~~Vl~~F~~~G--~I~~~~~~--p-~~--~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp~d   78 (151)
                      -|.|-+.|.+.+ +.+.+.|++||  +|.+....  + ++  ..+-.|.|.+..+|++|+ ..||..+.|.. |-|.+..
T Consensus         3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~-i~V~~~~   81 (90)
T 3p5t_L            3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN-PVVTPSN   81 (90)
T ss_dssp             -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC-CEECCC-
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE-EEEEECC
Confidence            366778988754 56888899999  88776421  1 11  348999999999999999 58999998866 7887776


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus        82 ~   82 (90)
T 3p5t_L           82 K   82 (90)
T ss_dssp             -
T ss_pred             C
Confidence            5

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=97.80  E-value=6.9e-05  Score=59.65  Aligned_cols=71  Identities=17%  Similarity=0.233  Sum_probs=56.3

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP   76 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp   76 (151)
                      ..+-|.|-|+|++. .+.|.+.|++||.|.++....   ....+..|+|.+..+|++||..||..+.|.. |-|.+
T Consensus        40 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~-i~v~~  114 (292)
T 2ghp_A           40 ELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNE-IIVSH  114 (292)
T ss_dssp             --CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEE-CEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcE-EEEEE
Confidence            46789999999985 457888899999999875311   1357999999999999999999999998865 55544

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=97.79  E-value=3.2e-05  Score=52.86  Aligned_cols=72  Identities=13%  Similarity=0.112  Sum_probs=56.3

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC--CC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG--PR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~--p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      ..+-|.|-|.|.. ..+.+.+.|++||.|.+....  ++  ...+-.|.|.+..+|++||. ||..++|.. |-|....
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~-l~v~~a~   84 (102)
T 2xs2_A            8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKK-LKLGPAI   84 (102)
T ss_dssp             EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEE-CEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEE-EEEEECC
Confidence            3467889999987 555778889999999887531  11  23689999999999999999 999998855 6666643

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=97.78  E-value=0.00011  Score=52.03  Aligned_cols=62  Identities=24%  Similarity=0.170  Sum_probs=50.9

Q ss_pred             CCHHHHHHHHhhcCcEEeeccC--C----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896           17 ADTNLVLREFEKCGVILKHVPG--P----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus        17 ~~~~~Vl~~F~~~G~I~~~~~~--p----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      +....|.++|++||+|++....  +    ....+..|+|.+..+|++|+. .||+.++|.. |-|..+++
T Consensus        25 d~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~-i~v~~a~~   93 (105)
T 2pe8_A           25 DLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV-VKACFYNL   93 (105)
T ss_dssp             -CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEECCH
T ss_pred             HHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE-EEEEEcCH
Confidence            4568999999999999987531  1    235799999999999999997 5999999976 88888876

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.77  E-value=0.00022  Score=50.04  Aligned_cols=60  Identities=15%  Similarity=0.152  Sum_probs=49.1

Q ss_pred             HHHHHHHhhcCcEEeeccC-CCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECChH
Q 031896           20 NLVLREFEKCGVILKHVPG-PRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus        20 ~~Vl~~F~~~G~I~~~~~~-p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~~   80 (151)
                      ..|.++|++||+|.++... .....+..|+|.+..+|++|+. .||..|+|.. |-|...++.
T Consensus        41 ~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~-l~v~~a~~~  102 (112)
T 2dit_A           41 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQ-ITAQAWDGT  102 (112)
T ss_dssp             HHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEE-CEEEECCSC
T ss_pred             HHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcE-EEEEEeCCC
Confidence            5788999999999987531 1235789999999999999995 6999998865 888887663

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=97.77  E-value=0.00015  Score=52.31  Aligned_cols=61  Identities=13%  Similarity=0.108  Sum_probs=49.5

Q ss_pred             HHHHHHHHhhcCcEEeeccC-CCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECChH
Q 031896           19 TNLVLREFEKCGVILKHVPG-PRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus        19 ~~~Vl~~F~~~G~I~~~~~~-p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~~   80 (151)
                      .+.|.++|++||+|+++... ......+.|+|.+..+|++|++ .||+.++|.. |-|..++..
T Consensus        31 ~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~-i~v~~~~~~   93 (114)
T 3s6e_A           31 KDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM-ITAAYVPLP   93 (114)
T ss_dssp             HHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE-CEEEEECHH
T ss_pred             HHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEEcHH
Confidence            34789999999999987641 1235789999999999999997 5999999976 777777653

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.76  E-value=6.7e-05  Score=52.20  Aligned_cols=74  Identities=16%  Similarity=0.143  Sum_probs=57.3

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcE----EeeccCC-CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVI----LKHVPGP-RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I----~~~~~~p-~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      ..+.|.|-++|...+ +.+.+.|++||.|    +...... ....+..|.|.+..+|++||.. ||..|.|.. |-|...
T Consensus        24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~-l~v~~a  102 (115)
T 2cpx_A           24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI-LVIEFG  102 (115)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB-CEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE-EEEEEc
Confidence            347899999998854 5677789999998    4333211 2347999999999999999985 999998865 788877


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus       103 ~~  104 (115)
T 2cpx_A          103 KN  104 (115)
T ss_dssp             CC
T ss_pred             cC
Confidence            65

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=97.75  E-value=0.00011  Score=58.26  Aligned_cols=72  Identities=18%  Similarity=0.151  Sum_probs=58.8

Q ss_pred             cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      ...+.|.|-|+|++.+ +.|.+.|++||.|.++... .......|.|.+..+|++||. .||..|.|.. |-|.+.
T Consensus        20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~-l~v~~a   93 (261)
T 3sde_A           20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN-RDRGFGFIRLESRTLAEIAKAELDGTILKSRP-LRIRFA   93 (261)
T ss_dssp             CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE-CEEEEC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCcEEEEEECCHHHHHHHHHHcCCcEECCce-eEeeec
Confidence            3457899999999854 5777788999999988753 356899999999999999998 7999998854 666653

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.75  E-value=4.7e-05  Score=49.15  Aligned_cols=68  Identities=9%  Similarity=0.115  Sum_probs=51.6

Q ss_pred             EEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896            8 LIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP   76 (151)
Q Consensus         8 wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp   76 (151)
                      -|.|-|.|++. .+.+.+.|++||.|.+.....     ....+-.|+|.++.+|++||+.....++|.- |-|..
T Consensus         2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~-l~v~~   75 (77)
T 1uaw_A            2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT-IDPKV   75 (77)
T ss_dssp             CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCC-CEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEE-EEEEe
Confidence            36788999874 457788899999998765311     1246999999999999999998778887754 55543

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=97.74  E-value=0.00016  Score=52.26  Aligned_cols=72  Identities=13%  Similarity=0.124  Sum_probs=55.5

Q ss_pred             CcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896            6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~   79 (151)
                      .+.|.|-|+|++. .+.+.+.|++||.|.++....     ....+-.|.|.++.+|++||. ++..++|.. |-|.+..+
T Consensus         3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~-i~v~~~~~   80 (167)
T 2cjk_A            3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKV-IDPKRAIP   80 (167)
T ss_dssp             GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEE-CCCEECCC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeE-cccccccc
Confidence            5678899999984 457778899999999876421     123699999999999999999 467787755 66666544

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=97.73  E-value=0.00015  Score=53.03  Aligned_cols=74  Identities=16%  Similarity=0.136  Sum_probs=57.9

Q ss_pred             CCcEEEEecCCCCCHHHHH-----HHHhhcCcEEeeccCC--CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896            5 SSFLIVPFRFPPADTNLVL-----REFEKCGVILKHVPGP--RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP   76 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~~~Vl-----~~F~~~G~I~~~~~~p--~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp   76 (151)
                      ..+-|.|-+.|+.....-|     +.|++||.|+++....  ....+-.|+|.+..+|++|+. .||..|.|.. |-|..
T Consensus        28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~-l~V~~  106 (127)
T 2a3j_A           28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP-LVITF  106 (127)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC-CEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE-EEEEE
Confidence            3567889999998766544     5899999999876422  235789999999999999996 5999998875 77777


Q ss_pred             CCh
Q 031896           77 LDP   79 (151)
Q Consensus        77 ~d~   79 (151)
                      ..+
T Consensus       107 a~~  109 (127)
T 2a3j_A          107 SET  109 (127)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            643

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.73  E-value=0.00012  Score=50.94  Aligned_cols=64  Identities=8%  Similarity=0.014  Sum_probs=50.7

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHH-hCCceecC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALS-KNGMQING   68 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g   68 (151)
                      ..+.|.|-++|+... +.+.+.|++||+|.+....  +++  ..+-.|+|.+..+|++||. .||..|.|
T Consensus        24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~   93 (114)
T 1x5o_A           24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKT   93 (114)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence            457899999999854 5677788999999986531  122  3589999999999999999 79999854

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=97.72  E-value=0.00016  Score=52.46  Aligned_cols=72  Identities=14%  Similarity=0.247  Sum_probs=57.8

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhc----C-------cEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEE
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKC----G-------VILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIV   72 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~----G-------~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mI   72 (151)
                      ..+.|.|-|+|++ ..+.+.+.|++|    |       .|.+.... ....+-.|.|.++.+|++||..||..+.|.. |
T Consensus         3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~-i   80 (172)
T 2g4b_A            3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAMAFDGIIFQGQS-L   80 (172)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-TTTTEEEEEESSHHHHHHHGGGTTCEETTEE-C
T ss_pred             cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-CCCCEEEEEeCCHHHHHHHHHhCCcEecCce-e
Confidence            4678999999998 455788889999    6       67766543 3578999999999999999999999998865 6


Q ss_pred             EEEECC
Q 031896           73 GVKPLD   78 (151)
Q Consensus        73 GVkp~d   78 (151)
                      -|.+..
T Consensus        81 ~v~~~~   86 (172)
T 2g4b_A           81 KIRRPH   86 (172)
T ss_dssp             EEECCS
T ss_pred             eecCCc
Confidence            666543

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=97.72  E-value=0.00022  Score=56.43  Aligned_cols=74  Identities=16%  Similarity=0.126  Sum_probs=59.6

Q ss_pred             ccCCcEEEEecCCCCCHHHHH-----HHHhhcCcEEeeccCCC--CCCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEE
Q 031896            3 LISSFLIVPFRFPPADTNLVL-----REFEKCGVILKHVPGPR--DANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGV   74 (151)
Q Consensus         3 ~~~~~wVtVFGfp~~~~~~Vl-----~~F~~~G~I~~~~~~p~--~~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGV   74 (151)
                      ....+.|.|-++|.+.+..-|     +.|++||.|+++....+  ...+-.|+|.+..+|++|| ..||..|.|.. |-|
T Consensus         6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v   84 (282)
T 3pgw_A            6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP-MRI   84 (282)
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE-EEE
Confidence            345778999999999776655     58999999999874222  3469999999999999999 67999998855 777


Q ss_pred             EEC
Q 031896           75 KPL   77 (151)
Q Consensus        75 kp~   77 (151)
                      ...
T Consensus        85 ~~a   87 (282)
T 3pgw_A           85 QYA   87 (282)
T ss_pred             EEe
Confidence            665

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=97.72  E-value=6.6e-05  Score=55.18  Aligned_cols=75  Identities=16%  Similarity=0.093  Sum_probs=59.3

Q ss_pred             cCCcEEEEecCCCCCHH-HHHHHHhhcCcEE--eeccC--CC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896            4 ISSFLIVPFRFPPADTN-LVLREFEKCGVIL--KHVPG--PR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP   76 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~--~~~~~--p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp   76 (151)
                      ...+.|.|-|.|.+.+. .|.+.|++| .|+  ++...  +.  ...+-.|+|.++.+|++||.+|+..|+|.. |-|.+
T Consensus        40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~-I~V~~  117 (126)
T 2hgm_A           40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY-IEVFK  117 (126)
T ss_dssp             SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBC-CCCEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEE-EEEEE
Confidence            34678999999998554 677888999 676  44321  11  247999999999999999999999999986 88888


Q ss_pred             CChH
Q 031896           77 LDPM   80 (151)
Q Consensus        77 ~d~~   80 (151)
                      ..+.
T Consensus       118 a~~~  121 (126)
T 2hgm_A          118 SSQE  121 (126)
T ss_dssp             ECHH
T ss_pred             CCHH
Confidence            8764

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.72  E-value=3.6e-05  Score=52.68  Aligned_cols=73  Identities=10%  Similarity=0.096  Sum_probs=55.8

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhh-cCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHH-hCCce-ecCeEEEEEEE
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEK-CGVILKHVPG--PRD--ANWMHILYQNRSDAQKALS-KNGMQ-INGVLIVGVKP   76 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~-~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~-~nG~i-i~g~~mIGVkp   76 (151)
                      ..+-|.|-|+|+.. .+.+.+.|++ ||.|.+....  +++  ..+-.|.|.+..+|++||. .||.. |.|.. |-|.+
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~-l~v~~   86 (104)
T 2dhg_A            8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP-VRLSV   86 (104)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC-CCCCB
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEe-EEEEE
Confidence            45678899999984 4567788999 9999886531  122  4589999999999999999 69988 88855 55554


Q ss_pred             CC
Q 031896           77 LD   78 (151)
Q Consensus        77 ~d   78 (151)
                      ..
T Consensus        87 a~   88 (104)
T 2dhg_A           87 AI   88 (104)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=97.72  E-value=0.00047  Score=48.56  Aligned_cols=77  Identities=13%  Similarity=0.060  Sum_probs=63.2

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECChHHH
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDPMQR   82 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~~~~   82 (151)
                      ...|+.|=+.++.. -+.+.+.|.++|+|.+.... .....--|+|.++.+|.+|++. ||..+.|.- |-|+...+..-
T Consensus         6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~-~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~-I~V~~A~e~~~   83 (89)
T 2wbr_A            6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY-LNQGIALCKYTTREEANKAQMALNNCVLANTT-IFAESPSENEV   83 (89)
T ss_dssp             CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTEEETTEE-EEEECCCHHHH
T ss_pred             ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc-CCCcEEEEEECCHHHHHHHHHHhcCCEECCcE-EEEEECCHHHH
Confidence            46899999999984 45677788999999998753 2578899999999999999997 999998866 88888765433


Q ss_pred             H
Q 031896           83 Q   83 (151)
Q Consensus        83 ~   83 (151)
                      +
T Consensus        84 ~   84 (89)
T 2wbr_A           84 Q   84 (89)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=97.69  E-value=0.00018  Score=54.17  Aligned_cols=71  Identities=15%  Similarity=0.088  Sum_probs=56.3

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      .+-|.|-|+|++ ..+.|.+.|++||.|.++....     ....+..|+|.+..+|++||. .||..|.|.. |-|...
T Consensus        28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~-l~v~~~  105 (216)
T 2qfj_A           28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN-IKVGRP  105 (216)
T ss_dssp             HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CC-CEEECC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCee-EEEecC
Confidence            457889999998 4557888999999999876421     235799999999999999999 7999998865 666554

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=97.69  E-value=0.00011  Score=53.08  Aligned_cols=64  Identities=20%  Similarity=0.216  Sum_probs=51.2

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---CC--CCeEEEEcCCHHHHHHHHH-hCCceecC
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---RD--ANWMHILYQNRSDAQKALS-KNGMQING   68 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g   68 (151)
                      ..+-|.|-|.|+.. .+.+.+.|++||.|.+.....   ++  ..+..|+|.+..+|++||+ .||..+.|
T Consensus        88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g  158 (168)
T 1b7f_A           88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG  158 (168)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred             CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence            45678999999874 457788899999998765311   11  2589999999999999999 79999966

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=97.69  E-value=0.00014  Score=55.60  Aligned_cols=74  Identities=14%  Similarity=0.199  Sum_probs=58.7

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC--C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP--R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p--~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      ..+.|.|-++|+.. .+.|.+.|++||.|+++....  +  ...+..|+|.+..+|++||. .||..|.|.. |-|....
T Consensus        87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~-l~V~~a~  165 (177)
T 2f3j_A           87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP-MDIQLVA  165 (177)
T ss_dssp             TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB-CEEEEES
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE-EEEEEec
Confidence            35789999999884 456778899999998875421  1  24689999999999999999 6999998866 6777654


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus       166 ~  166 (177)
T 2f3j_A          166 S  166 (177)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=97.68  E-value=9.2e-05  Score=58.68  Aligned_cols=75  Identities=19%  Similarity=0.247  Sum_probs=61.5

Q ss_pred             CCcEEEEecCCCC--CHHHHHHHHhhcCcEEeecc--CCCC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPA--DTNLVLREFEKCGVILKHVP--GPRD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~--~~~~Vl~~F~~~G~I~~~~~--~p~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      ..+-|.|-|+|+.  ..+.|.+.|++||.|.+...  .+++  ..+..|+|.+..+|++||. .||..|+|.. |-|..+
T Consensus       183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~a  261 (284)
T 3smz_A          183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSH-LRVSFC  261 (284)
T ss_dssp             SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEE-CEEEEC
T ss_pred             CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeE-EEEEEe
Confidence            4567999999998  35899999999999977652  1222  4699999999999999999 6999998865 889988


Q ss_pred             ChH
Q 031896           78 DPM   80 (151)
Q Consensus        78 d~~   80 (151)
                      ++.
T Consensus       262 ~~~  264 (284)
T 3smz_A          262 APG  264 (284)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            654

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=97.67  E-value=0.0001  Score=50.20  Aligned_cols=74  Identities=11%  Similarity=0.095  Sum_probs=57.4

Q ss_pred             CCcEEEEecCCCCCHH-HHHHHHhhcCcEEeeccC----CCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPADTN-LVLREFEKCGVILKHVPG----PRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~----p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+.|.|-+.|.+.+. .+.+.|++||.|.+....    -....+-.|+|.+..+|++||..||..|.|.. |-|....+
T Consensus        16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~-l~V~~a~~   94 (101)
T 1fj7_A           16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNE-IKLEKPKG   94 (101)
T ss_dssp             CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBC-CEEECCSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcE-EEEEEcCC
Confidence            4567889999998554 677789999987662110    12356999999999999999999999998865 77777654

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=97.67  E-value=3.5e-05  Score=51.40  Aligned_cols=72  Identities=17%  Similarity=0.142  Sum_probs=54.4

Q ss_pred             cEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECCh
Q 031896            7 FLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         7 ~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~   79 (151)
                      +-|.|-|+|++.. +.+.+.|++||.|.+.....     ....+..|+|.+.. |++|+.. ||..+.|.. |-|.+.++
T Consensus         2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~-l~V~~a~~   79 (90)
T 2ki2_A            2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRT-IRVTEANP   79 (90)
T ss_dssp             EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSS-CSEEEC--
T ss_pred             cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeE-EEEEEcCC
Confidence            3577889998754 56777899999998875421     12469999999999 9999985 999998865 77877765


Q ss_pred             H
Q 031896           80 M   80 (151)
Q Consensus        80 ~   80 (151)
                      .
T Consensus        80 ~   80 (90)
T 2ki2_A           80 K   80 (90)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=97.67  E-value=0.00016  Score=55.91  Aligned_cols=73  Identities=14%  Similarity=0.092  Sum_probs=58.6

Q ss_pred             CcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--CC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896            6 SFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--PR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~   79 (151)
                      .+-|.|-|+|++.+ +.+.++|++||.|.+++..  .+  ...+..|.|.++.+|++||..++..++|.- |-|++-.+
T Consensus       109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~-l~V~~~~~  186 (193)
T 2voo_A          109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD-LLILFKDD  186 (193)
T ss_dssp             HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEE-CEEEETTT
T ss_pred             cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEE-EEEEEhHH
Confidence            46789999999855 5677889999999987531  11  236899999999999999999888998876 77888654

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=97.66  E-value=0.00057  Score=46.24  Aligned_cols=75  Identities=12%  Similarity=0.055  Sum_probs=54.3

Q ss_pred             ccCCcEEEEecCCCCCHH-HHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceec-CeEEEEEEECChH
Q 031896            3 LISSFLIVPFRFPPADTN-LVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQIN-GVLIVGVKPLDPM   80 (151)
Q Consensus         3 ~~~~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~-g~~mIGVkp~d~~   80 (151)
                      ....+.+.|-|.|.+.++ .+.++|++||.|.+.........+-.|+|+++.+|+++   ||..+. ++..|-|....+.
T Consensus         8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~---~~~~~~~~g~~v~v~~a~~k   84 (89)
T 3d2w_A            8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL---CGEDLIIKGISVHISNAEPK   84 (89)
T ss_dssp             ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH---TTCEEEETTEEEEEEECC--
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH---cCCCcccCCEEEEEEEcCCC
Confidence            346788999999998655 57778999999999875333467999999999999843   555442 3366899888764

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=97.65  E-value=0.00038  Score=54.06  Aligned_cols=73  Identities=12%  Similarity=0.073  Sum_probs=59.7

Q ss_pred             CCcEEEEecCC-CC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFP-PA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp-~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      ..+-|.|-++| .. ..+.+.+.|++||+|+++....+....-.|.|.++.+|++|+. .||..+.|.. |-|.+..
T Consensus         3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~-l~v~~s~   78 (205)
T 3tyt_A            3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQK-MNVCVSK   78 (205)
T ss_dssp             CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEECS
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCce-EEEEEcc
Confidence            45678899999 44 5567888999999999987533445789999999999999997 7999999966 7777754

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.65  E-value=0.00034  Score=49.15  Aligned_cols=73  Identities=10%  Similarity=-0.004  Sum_probs=57.9

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh---CCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK---NGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~---nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+-|.|-++|.+.+ +.+.+.|++||+|+++.. ..+.++-.|.|++..+|++|+..   ||..+.|.- |-|....+
T Consensus        14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~-l~V~~a~~   90 (101)
T 2cq1_A           14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILM-LKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQP-IYIQYSNH   90 (101)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEE-CEEEECSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-ECCCCEEEEEECCHHHHHHHHHHhccCCceECCcE-EEEEEcCc
Confidence            456788889998855 467777999999998875 34578999999999999999984   688888855 66666543

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.60  E-value=0.00017  Score=48.07  Aligned_cols=73  Identities=14%  Similarity=0.139  Sum_probs=54.6

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+-|.|-++|.+. .+.+.+.|++||.|.+.........+-.|.|.+..+|++|+.. ...+.| ..|-|....+
T Consensus         4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~-~~~~~g-~~l~v~~a~~   77 (88)
T 1wf0_A            4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE-DLIIKG-ISVHISNAEP   77 (88)
T ss_dssp             CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC-EEEETT-EEEEEECCCC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC-CceeCC-EEEEEEecCC
Confidence            35778899999984 4567788999999998875333467999999999999876443 334455 5577777655

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=97.59  E-value=0.00031  Score=50.90  Aligned_cols=74  Identities=18%  Similarity=0.027  Sum_probs=57.2

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEee--------c--cCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEE
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKH--------V--PGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIV   72 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~--------~--~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mI   72 (151)
                      ..+-|.|-++|+..+ +.+.+.|++||.|.+.        .  .......+..|.|.+..+|++||. .||..|.|.. |
T Consensus        44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~-l  122 (143)
T 3egn_A           44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP-M  122 (143)
T ss_dssp             CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE-C
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE-E
Confidence            346789999998854 5677889999988652        1  111235799999999999999999 6999998865 7


Q ss_pred             EEEECCh
Q 031896           73 GVKPLDP   79 (151)
Q Consensus        73 GVkp~d~   79 (151)
                      -|....+
T Consensus       123 ~V~~a~~  129 (143)
T 3egn_A          123 VVQFARS  129 (143)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            8877643

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.57  E-value=0.00042  Score=47.04  Aligned_cols=74  Identities=12%  Similarity=0.084  Sum_probs=57.6

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+.|.|-++|+.. .+.|.++|++|+.|.-.....++  ..+-.|+|.+..+|++||. .||..|.|.. |-|....+
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~V~~a~~   91 (102)
T 2fc8_A           14 PSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK-VTLDWAKP   91 (102)
T ss_dssp             CCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE-CEEEECCC
T ss_pred             CCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE-EEEEEecC
Confidence            45678899999985 45677788999877655431122  3699999999999999998 5999998865 88888765

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=97.57  E-value=0.00033  Score=51.95  Aligned_cols=73  Identities=12%  Similarity=0.206  Sum_probs=57.7

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhc----C-------cEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEE
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKC----G-------VILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIV   72 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~----G-------~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mI   72 (151)
                      ..+-|.|-|+|++. .+.+.+.|++|    |       .|++...+ ....+-.|.|.++.+|++||..||..|.|.. |
T Consensus         3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~-i   80 (198)
T 2yh0_A            3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAMAFDGIIFQGQS-L   80 (198)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-TTTTEEEEEESCSHHHHHHGGGTTEEETTEE-E
T ss_pred             ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-CCCCEEEEEeCCHHHHHHHHHhcCCEEcCce-E
Confidence            35678899999984 45788889999    5       56665542 3468999999999999999999999998865 7


Q ss_pred             EEEECCh
Q 031896           73 GVKPLDP   79 (151)
Q Consensus        73 GVkp~d~   79 (151)
                      -|.+..+
T Consensus        81 ~v~~~~~   87 (198)
T 2yh0_A           81 KIRRPHD   87 (198)
T ss_dssp             EEECCCC
T ss_pred             EEeCCCC
Confidence            7777644

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=97.56  E-value=3.7e-05  Score=57.31  Aligned_cols=73  Identities=11%  Similarity=0.098  Sum_probs=56.5

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+.|.|-+.|.+. .+.|.++|++|| |+++...  +.+  ..+-.|+|.++.+|++||.+||..|.|.. |-|.+..+
T Consensus        45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~-i~V~~a~~  122 (139)
T 2hgn_A           45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRY-IELFLNST  122 (139)
T ss_dssp             CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCC-CCCEECCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEE-EEEEECCC
Confidence            34568888999984 457888899999 6665431  122  35899999999999999999999999876 77777654

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=97.55  E-value=0.0002  Score=51.83  Aligned_cols=73  Identities=18%  Similarity=0.021  Sum_probs=53.4

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHH-hCCceecCe--EEEEEEE
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALS-KNGMQINGV--LIVGVKP   76 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~--~mIGVkp   76 (151)
                      ..+-|.|-|.|+..+ ..+.+.|++||.|.+....  +++  ..+..|+|.+..+|++||. .||..+.++  --|-|..
T Consensus        94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~  173 (175)
T 3nmr_A           94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF  173 (175)
T ss_dssp             GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred             CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence            456789999999854 5678889999999886531  122  3579999999999999995 599777541  2355544


Q ss_pred             C
Q 031896           77 L   77 (151)
Q Consensus        77 ~   77 (151)
                      .
T Consensus       174 a  174 (175)
T 3nmr_A          174 A  174 (175)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=97.55  E-value=0.00023  Score=49.98  Aligned_cols=54  Identities=22%  Similarity=0.223  Sum_probs=42.5

Q ss_pred             HHHHHHH-hhcCcEEeeccCC----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEE
Q 031896           20 NLVLREF-EKCGVILKHVPGP----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGV   74 (151)
Q Consensus        20 ~~Vl~~F-~~~G~I~~~~~~p----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGV   74 (151)
                      ..|.++| ++||.|++.....    ....+..|+|.++.+|++|+. .||+.++|.. |-|
T Consensus        41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~-i~v  100 (104)
T 1jmt_A           41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP-IHA  100 (104)
T ss_dssp             HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE-CCE
T ss_pred             HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE-EEE
Confidence            4566777 9999999886421    124699999999999999997 5999999866 444

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.53  E-value=0.00066  Score=47.78  Aligned_cols=73  Identities=12%  Similarity=0.009  Sum_probs=56.2

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CC--ceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NG--MQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG--~ii~g~~mIGVkp~d~   79 (151)
                      ..+-|.|-++|.+.+ +.+.+.|++||.|.++... .+.+.-.|.|++..+|++|+.. ||  ..|.|.- |-|....+
T Consensus        14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~-l~V~~a~~   90 (104)
T 1wex_A           14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM-PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQ-AFFNYSTS   90 (104)
T ss_dssp             CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB-CEEEECSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCEE-EEEEEccC
Confidence            356788999998854 5788889999999998753 3578999999999999999984 44  4577754 55665543

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=97.53  E-value=0.00036  Score=55.38  Aligned_cols=80  Identities=10%  Similarity=0.015  Sum_probs=61.6

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcC--cEEeeccCC---C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEE
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCG--VILKHVPGP---R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVK   75 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G--~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVk   75 (151)
                      ..+-|.|-++|...+ +.|.++|++||  +|+++....   +  ...+-.|.|.+..+|++||. .||..|.|.. |-|.
T Consensus        67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~-l~V~  145 (229)
T 3q2s_C           67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN-PVVT  145 (229)
T ss_dssp             --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBC-CEEE
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEE-eEEE
Confidence            345689999999855 56778899999  898875311   1  13589999999999999999 6999999866 8999


Q ss_pred             ECChHHHHHH
Q 031896           76 PLDPMQRQAL   85 (151)
Q Consensus        76 p~d~~~~~~l   85 (151)
                      ...+......
T Consensus       146 ~a~~~~~~~~  155 (229)
T 3q2s_C          146 PVNKQFLSQF  155 (229)
T ss_dssp             ECCHHHHHHH
T ss_pred             ECCCCccchh
Confidence            9887644433

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.52  E-value=0.00048  Score=49.32  Aligned_cols=71  Identities=14%  Similarity=0.030  Sum_probs=55.1

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-C--CceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-N--GMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-n--G~ii~g~~mIGVkp~   77 (151)
                      ..+-|.|-++|.+.+ +.+.+.|++||+|.++... .+.++-.|.|.+..+|++|+.. |  |..|.|.- |-|...
T Consensus        15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~-~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~-l~V~~A   89 (105)
T 1sjq_A           15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP-IYIQFS   89 (105)
T ss_dssp             CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEE-CCBCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEE-EEEEEc
Confidence            345688889998855 5678889999999998753 3578999999999999999983 4  57888854 444443

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=97.52  E-value=0.00028  Score=47.16  Aligned_cols=70  Identities=16%  Similarity=0.060  Sum_probs=56.1

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      +.+-|.|-|.|++.. +.+.+.|++| +|.+... +....+-.|+|.++.+|++|+. .||..+.|.. |-|...
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~-l~V~~a   75 (88)
T 1wg1_A            4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV-DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKD-LIVQLQ   75 (88)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE-EGGGTEEEECCSCHHHHHHHHHHHTTEEETTEE-EEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE-eCCCcEEEEEECCHHHHHHHHHHhCCCeECCcE-EEEEEc
Confidence            356688999998855 4677788999 8887754 2345799999999999999999 7999998866 777664

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=97.51  E-value=0.00045  Score=59.97  Aligned_cols=73  Identities=23%  Similarity=0.196  Sum_probs=58.6

Q ss_pred             CcEEEEecCCCCCHH-HHHHHHhhcCcEEeeccCC---C--CCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECC
Q 031896            6 SFLIVPFRFPPADTN-LVLREFEKCGVILKHVPGP---R--DANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLD   78 (151)
Q Consensus         6 ~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d   78 (151)
                      .+-|.|-++|+..+. .|.++|++||.|+++....   +  ...+..|+|.+..+|++||.. ||..|.|.. |-|....
T Consensus       102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~-i~V~~a~  180 (437)
T 3pgw_S          102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR-VLVDVER  180 (437)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEE-EEEEEeC
Confidence            367999999998554 6778899999999875421   1  257999999999999999955 999998865 8888875


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus       181 ~  181 (437)
T 3pgw_S          181 G  181 (437)
T ss_pred             C
Confidence            4

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=97.51  E-value=0.00015  Score=52.52  Aligned_cols=61  Identities=20%  Similarity=0.155  Sum_probs=48.6

Q ss_pred             CHHHHHHHHhhcCcEEeeccC-C-C-------CCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECCh
Q 031896           18 DTNLVLREFEKCGVILKHVPG-P-R-------DANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDP   79 (151)
Q Consensus        18 ~~~~Vl~~F~~~G~I~~~~~~-p-~-------~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+.|.++|++||+|.++... + .       ....+.|+|.+..+|++|+.. ||+.++|.. |-|..++.
T Consensus        38 leedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~-i~v~~~~~  108 (118)
T 3ue2_A           38 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK-VVAEVYDQ  108 (118)
T ss_dssp             HHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEEECH
T ss_pred             HHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcE-EEEEEcCh
Confidence            467899999999999987521 0 1       125899999999999999976 999999976 77776655

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=97.50  E-value=0.00024  Score=57.74  Aligned_cols=72  Identities=14%  Similarity=0.012  Sum_probs=59.0

Q ss_pred             CcEEEEecCCCCC----------HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCcee--------
Q 031896            6 SFLIVPFRFPPAD----------TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQI--------   66 (151)
Q Consensus         6 ~~wVtVFGfp~~~----------~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii--------   66 (151)
                      .+-+.|-|++.+.          -+.+.++|++||+|.++... ...++-.|+|.++.+|++|+. .||+.|        
T Consensus       134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~  212 (240)
T 3u1l_A          134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEW  212 (240)
T ss_dssp             CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTG
T ss_pred             CceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccc
Confidence            4678888999875          67888999999999988753 357899999999999999996 599999        


Q ss_pred             ----cCeEEEEEEECCh
Q 031896           67 ----NGVLIVGVKPLDP   79 (151)
Q Consensus        67 ----~g~~mIGVkp~d~   79 (151)
                          .|.. |-|++..+
T Consensus       213 ~~~~~gr~-L~V~wA~~  228 (240)
T 3u1l_A          213 DDRREGTG-LLVKWANE  228 (240)
T ss_dssp             GGGGGSCC-CEEEECC-
T ss_pred             cccCCCCE-EEEEEccC
Confidence                6655 88888743

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.47  E-value=0.00041  Score=50.43  Aligned_cols=60  Identities=20%  Similarity=0.345  Sum_probs=49.7

Q ss_pred             CcEEEE--ecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCcee
Q 031896            6 SFLIVP--FRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQI   66 (151)
Q Consensus         6 ~~wVtV--FGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii   66 (151)
                      .+.+.|  -|.+.+.. +.+.+.|++||+|.++.. +.+..+-.|+|.++.+|++|+. .||+.+
T Consensus        25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i-~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~   88 (114)
T 2cq2_A           25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-PPNKPYSFARYRTTEESKRAYVTLNGKEV   88 (114)
T ss_dssp             CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC-CTTCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred             CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence            355777  77887744 577788999999998876 4567899999999999999998 599887

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=97.38  E-value=0.00046  Score=50.42  Aligned_cols=73  Identities=11%  Similarity=0.118  Sum_probs=57.0

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEe-----eccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILK-----HVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~-----~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      ..+-|.|-|+|++.+ +.|.+.|++||.|..     ... .....+-.|+|.++.+|++||..||..+.|.. |-|.+..
T Consensus        12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~-l~v~~~~   89 (175)
T 1fje_B           12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRT-GTNRKFGYVDFESAEDLEKALELTGLKVFGNE-IKLEKPK   89 (175)
T ss_dssp             SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEE-ETTTTEEEEEESSHHHHHHHHHGGGEEETTEE-EEEECCC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCC-CccccEEEEEECCHHHHHHHHhcCCCEeCCeE-EEEecCC
Confidence            467889999999855 456668888887544     221 12457999999999999999999999999865 8888875


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus        90 ~   90 (175)
T 1fje_B           90 G   90 (175)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=97.33  E-value=0.0017  Score=51.28  Aligned_cols=74  Identities=15%  Similarity=0.097  Sum_probs=59.0

Q ss_pred             CcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--C-CC--CCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEECC
Q 031896            6 SFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--P-RD--ANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p-~~--~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp~d   78 (151)
                      .+-|.|-|.|+..+ +.+.+.|++||.|.+....  + ++  ..+..|.|.+..+|++|+ ..||..++|.. |-|.+.+
T Consensus        95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~-i~v~~a~  173 (284)
T 3smz_A           95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRT-LYVHWTD  173 (284)
T ss_dssp             SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEECC
T ss_pred             CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE-EEEEECC
Confidence            45688999999854 5788889999999876531  1 12  348999999999999999 77999998865 8888887


Q ss_pred             hH
Q 031896           79 PM   80 (151)
Q Consensus        79 ~~   80 (151)
                      +.
T Consensus       174 ~~  175 (284)
T 3smz_A          174 AG  175 (284)
T ss_dssp             GG
T ss_pred             CC
Confidence            64

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=97.29  E-value=0.0015  Score=50.14  Aligned_cols=70  Identities=21%  Similarity=0.198  Sum_probs=53.7

Q ss_pred             cEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC---C--CCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896            7 FLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP---R--DANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus         7 ~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      +.|.|=++|++.+ +.|.++|++||+|+++....   +  ...+-.|.|.+..+|++||.. ||..+.|.. |-|.+.
T Consensus        16 ~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~-i~~~~~   92 (213)
T 4f02_A           16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP-VRIMWS   92 (213)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEEC
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc-cccccc
Confidence            5677889999854 56778889999999875311   1  235899999999999999965 999998865 555553

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.28  E-value=0.0013  Score=48.20  Aligned_cols=70  Identities=14%  Similarity=0.032  Sum_probs=51.7

Q ss_pred             EEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCe-EEEEcCCHHHHHHHHH-hCCceecCe-EEEEEEECC
Q 031896            8 LIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANW-MHILYQNRSDAQKALS-KNGMQINGV-LIVGVKPLD   78 (151)
Q Consensus         8 wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NW-i~i~y~~~~~A~rAL~-~nG~ii~g~-~mIGVkp~d   78 (151)
                      .|.|-+.+... .+.+.+.|++||+|.++.... ...+ -.|.|++..+|++|+. .||..|.|. ..|-|.-..
T Consensus        27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak  100 (124)
T 2e5i_A           27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR  100 (124)
T ss_dssp             EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-SSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred             EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence            45677887664 457778899999999876422 2355 8999999999999998 599999763 345555443

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.28  E-value=0.0011  Score=46.47  Aligned_cols=65  Identities=18%  Similarity=0.321  Sum_probs=47.4

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC-------CCCCeEEEEcCCHHHHHHHHHhCCceecCeE
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP-------RDANWMHILYQNRSDAQKALSKNGMQINGVL   70 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p-------~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~   70 (151)
                      ..+-|.|-++|++.+ +.+.++|++||.|.......       ....+-.|.|.++.+|++||..- ..++|..
T Consensus         7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~   79 (114)
T 2dnl_A            7 GSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKL   79 (114)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEE
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcE
Confidence            356688999999854 56778899999998332211       12469999999999999999863 2355544

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=97.28  E-value=0.00093  Score=48.28  Aligned_cols=75  Identities=16%  Similarity=0.184  Sum_probs=54.8

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC--CC-----CCCeEEEEcCCHHHHHHHHH-hCCceec-C-eEEEE
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG--PR-----DANWMHILYQNRSDAQKALS-KNGMQIN-G-VLIVG   73 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~--p~-----~~NWi~i~y~~~~~A~rAL~-~nG~ii~-g-~~mIG   73 (151)
                      +.+-|.|-++|++. .+.+.+.|++||.|.+....  +.     ....-.|+|.++.+|++|+. .||..+. + ...+-
T Consensus         2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~   81 (175)
T 3nmr_A            2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ   81 (175)
T ss_dssp             CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred             CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence            45778899999984 45788889999999887531  11     23589999999999999996 6887664 2 23355


Q ss_pred             EEECCh
Q 031896           74 VKPLDP   79 (151)
Q Consensus        74 Vkp~d~   79 (151)
                      +.+.++
T Consensus        82 ~~~~~~   87 (175)
T 3nmr_A           82 MKPADS   87 (175)
T ss_dssp             EEECGG
T ss_pred             Eccccc
Confidence            666544

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=96.35  E-value=4.3e-05  Score=53.62  Aligned_cols=75  Identities=15%  Similarity=0.100  Sum_probs=57.4

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEe--------eccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCe
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILK--------HVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGV   69 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~--------~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~   69 (151)
                      ..+.|.|-|+|.... +.+.+.|++||.|.+        +....     ....+..|+|.+..+|++||. .||..|.|.
T Consensus         6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~   85 (116)
T 2lcw_A            6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN   85 (116)
Confidence            456788889988744 467788999999987        33211     123589999999999999999 599999886


Q ss_pred             EEEEEEECChH
Q 031896           70 LIVGVKPLDPM   80 (151)
Q Consensus        70 ~mIGVkp~d~~   80 (151)
                      . |-|....+.
T Consensus        86 ~-l~V~~a~~~   95 (116)
T 2lcw_A           86 P-IKVSFATRR   95 (116)
Confidence            5 788777654

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.24  E-value=0.00086  Score=48.86  Aligned_cols=74  Identities=14%  Similarity=0.057  Sum_probs=57.3

Q ss_pred             cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-C--CceecCeEEEEEEECCh
Q 031896            4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-N--GMQINGVLIVGVKPLDP   79 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-n--G~ii~g~~mIGVkp~d~   79 (151)
                      ...+-|.|-++|++.+ +.+.+.|++||.|+++.. ..+.+.-.|.|++..+|++|+.. |  |..|.|.- |-|....+
T Consensus        29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i-~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~-l~V~~a~~  106 (119)
T 2ad9_A           29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM-LKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP-IYIQFSNH  106 (119)
T ss_dssp             SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEE-EGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC-CEEEECSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhccCCceECCeE-EEEEEccC
Confidence            3456788999999855 567788999999998875 23568999999999999999984 4  56787755 66666543

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.11  E-value=0.0033  Score=44.32  Aligned_cols=72  Identities=22%  Similarity=0.195  Sum_probs=55.7

Q ss_pred             CCcEEEEecCCC-CCHH-HHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CC--ceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPP-ADTN-LVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NG--MQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~-~~~~-~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG--~ii~g~~mIGVkp~d   78 (151)
                      ..+-|.|=++|. +.+. .+.+.|++||+|.++.. ..+.+.-.|.|++..+|++|+.. ||  ..|.|.- |-|....
T Consensus        14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~-l~V~~a~   90 (102)
T 1x4d_A           14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI-LNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKP-VRVHLSQ   90 (102)
T ss_dssp             CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE-CSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEE-CEEEEEC
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE-EcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcE-EEEEECC
Confidence            345688889999 7654 67778999999999875 33557899999999999999984 54  5688865 6666554

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.08  E-value=0.0011  Score=47.86  Aligned_cols=72  Identities=21%  Similarity=0.185  Sum_probs=56.2

Q ss_pred             CCcEEEEecCCCC--CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh---CCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPA--DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK---NGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~--~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~---nG~ii~g~~mIGVkp~d   78 (151)
                      ..+-|.|=++|.+  ..+.+.+.|++||+|.++... ...++-.|.|++..+|++|+..   ++..|.|.- |-|....
T Consensus        24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~-l~V~~a~  100 (112)
T 1x4f_A           24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRC-VKVDLSE  100 (112)
T ss_dssp             CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC-CEEEEEC
T ss_pred             CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEE-EEEEECc
Confidence            4567888899986  556788999999999998753 4578999999999999999984   456677754 5555543

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=97.07  E-value=0.0021  Score=47.63  Aligned_cols=72  Identities=17%  Similarity=0.229  Sum_probs=53.4

Q ss_pred             cEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCe-EEEEcCCHHHHHHHHHh-CCceecC-eEEEEEEECC
Q 031896            7 FLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANW-MHILYQNRSDAQKALSK-NGMQING-VLIVGVKPLD   78 (151)
Q Consensus         7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NW-i~i~y~~~~~A~rAL~~-nG~ii~g-~~mIGVkp~d   78 (151)
                      .+|.|-..+.. ..+.+.+.|++||+|.++........+ -.|.|.+..+|++|++. ||..|.| .+.|-|-.-.
T Consensus        29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak  104 (130)
T 3zzy_A           29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK  104 (130)
T ss_dssp             EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred             EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence            57888888876 445666778999999988643223345 89999999999999975 9998865 3445555443

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=97.07  E-value=0.0022  Score=44.36  Aligned_cols=71  Identities=13%  Similarity=0.186  Sum_probs=51.2

Q ss_pred             cEEEEecCCCCC-HHHHHHHHhhcCcE--EeeccC---CC--CCCeEEEEcCCHHHHHHHHHh-CCc----eecCeEEEE
Q 031896            7 FLIVPFRFPPAD-TNLVLREFEKCGVI--LKHVPG---PR--DANWMHILYQNRSDAQKALSK-NGM----QINGVLIVG   73 (151)
Q Consensus         7 ~wVtVFGfp~~~-~~~Vl~~F~~~G~I--~~~~~~---p~--~~NWi~i~y~~~~~A~rAL~~-nG~----ii~g~~mIG   73 (151)
                      ..|.|-+.|++. .+.+.+.|++||.|  .+++..   .+  ...+-.|+|.++.+|++||.. ||.    .|+|.- |-
T Consensus        10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~-i~   88 (95)
T 2lkz_A           10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT-IG   88 (95)
T ss_dssp             CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE-EE
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE-EE
Confidence            357888999985 45778889999954  344321   11  235999999999999999975 775    577865 66


Q ss_pred             EEECC
Q 031896           74 VKPLD   78 (151)
Q Consensus        74 Vkp~d   78 (151)
                      |..+.
T Consensus        89 V~~Ak   93 (95)
T 2lkz_A           89 VDFAK   93 (95)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            76553

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.99  E-value=0.0023  Score=45.00  Aligned_cols=59  Identities=15%  Similarity=0.235  Sum_probs=43.4

Q ss_pred             CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896           18 DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus        18 ~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      .-+.+.++|++||+|+++........+-.|.|.++.+|++|+.. +.-+.|.- |-|.+..
T Consensus        30 te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~-l~V~~a~   88 (100)
T 2d9o_A           30 SKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN-EVGLVDNP-LKISWLE   88 (100)
T ss_dssp             CHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT-CCBCSSSB-CEEECSS
T ss_pred             CHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh-cCCCCCCe-EEEEEcc
Confidence            45778889999999998875323456999999999999999997 43344433 4455443

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=96.99  E-value=0.00051  Score=49.29  Aligned_cols=73  Identities=14%  Similarity=0.180  Sum_probs=55.1

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEe--ec--cCC---CCCCeEEEEcCCHHHHHHHHHh-CCc----eecCeEE
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILK--HV--PGP---RDANWMHILYQNRSDAQKALSK-NGM----QINGVLI   71 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~--~~--~~p---~~~NWi~i~y~~~~~A~rAL~~-nG~----ii~g~~m   71 (151)
                      ..+-|.|-++|... .+.+.++|++||.|..  +.  ..+   ....+-.|+|.+. +|++|+.. ||.    .|.|.. 
T Consensus        22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~-   99 (131)
T 2m2b_A           22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT-   99 (131)
T ss_dssp             CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC-
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE-
Confidence            34678899999884 4578888999999954  22  211   1247999999999 99999875 998    888865 


Q ss_pred             EEEEECCh
Q 031896           72 VGVKPLDP   79 (151)
Q Consensus        72 IGVkp~d~   79 (151)
                      |-|....+
T Consensus       100 l~V~~a~~  107 (131)
T 2m2b_A          100 INVEFAKG  107 (131)
T ss_dssp             CCCEECCC
T ss_pred             EEEEECCC
Confidence            77777665

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=96.95  E-value=0.002  Score=50.99  Aligned_cols=73  Identities=21%  Similarity=0.272  Sum_probs=56.9

Q ss_pred             CcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHHh--CCceec---CeEEEEEE
Q 031896            6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALSK--NGMQIN---GVLIVGVK   75 (151)
Q Consensus         6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~~--nG~ii~---g~~mIGVk   75 (151)
                      ...|.|-|.|+.. ...|.+.|++||.|.+....  +++  ..+..|+|.+..+|.+||..  ||..+.   |.. |-|.
T Consensus        96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~-i~v~  174 (261)
T 3sde_A           96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRP-VIVE  174 (261)
T ss_dssp             SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCB-CEEE
T ss_pred             CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCce-EEEe
Confidence            4678899999985 45777889999999987531  222  46889999999999999999  788874   544 7788


Q ss_pred             ECCh
Q 031896           76 PLDP   79 (151)
Q Consensus        76 p~d~   79 (151)
                      |.++
T Consensus       175 ~~~~  178 (261)
T 3sde_A          175 PMEQ  178 (261)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            8765

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=96.91  E-value=0.0049  Score=43.66  Aligned_cols=69  Identities=14%  Similarity=0.027  Sum_probs=53.1

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCce--ecCeEEEEEE
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQ--INGVLIVGVK   75 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~i--i~g~~mIGVk   75 (151)
                      ..+-|.|=+.|++ ..+.+.+.|++||.|.+.... ...+.--|.|.+..+|++|+.. ||..  |.|.- |-|.
T Consensus        20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~-i~V~   92 (100)
T 3r27_A           20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHP-AFVN   92 (100)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE-EEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE-EEEE
Confidence            4566888899987 445788889999999988752 3568999999999999999985 6654  66754 4443

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=96.87  E-value=0.0033  Score=48.43  Aligned_cols=73  Identities=18%  Similarity=0.164  Sum_probs=54.3

Q ss_pred             cEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCC-CCCeEEEEcCCHHHHHHHHH-hCCceecC-eEEEEEEECCh
Q 031896            7 FLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPR-DANWMHILYQNRSDAQKALS-KNGMQING-VLIVGVKPLDP   79 (151)
Q Consensus         7 ~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~-~~NWi~i~y~~~~~A~rAL~-~nG~ii~g-~~mIGVkp~d~   79 (151)
                      ..|.|-+.+...+ +.+.+.|++||+|.++..... ....--|.|.+..+|++|+. .||..|.| ...|-|....+
T Consensus        47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~  123 (164)
T 1sjr_A           47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL  123 (164)
T ss_dssp             EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred             EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence            3566778887744 567778899999998764222 23478999999999999998 59999964 34477777654

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=96.84  E-value=0.0032  Score=48.78  Aligned_cols=63  Identities=17%  Similarity=0.111  Sum_probs=49.5

Q ss_pred             cEEEEecCCCCCH-HHHHHHHhhcCcE--EeeccCCC---CCCeEEEEcCCHHHHHHHHH-hCCceecCe
Q 031896            7 FLIVPFRFPPADT-NLVLREFEKCGVI--LKHVPGPR---DANWMHILYQNRSDAQKALS-KNGMQINGV   69 (151)
Q Consensus         7 ~wVtVFGfp~~~~-~~Vl~~F~~~G~I--~~~~~~p~---~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~   69 (151)
                      +-+.|.+.|++.+ +.+.+.|++||.|  .+....+.   ...+-.|.|.+..+|.+||. .||..|+|.
T Consensus       124 ~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~  193 (205)
T 3tyt_A          124 NVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP  193 (205)
T ss_dssp             SEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred             ceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence            4588999999854 5677888999999  55443222   13799999999999999997 599999775

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.82  E-value=0.0038  Score=44.51  Aligned_cols=61  Identities=16%  Similarity=0.274  Sum_probs=48.7

Q ss_pred             CCcEEEEecCCCCCHHH-----HHHHHhhc-CcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeE
Q 031896            5 SSFLIVPFRFPPADTNL-----VLREFEKC-GVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVL   70 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~~~-----Vl~~F~~~-G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~   70 (151)
                      +.+-|.|-..|......     +.+.|++| |.|+++.    + ..-.|+|.+..+|++|++ .||..+.|.-
T Consensus         8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----g-G~AfV~F~~~esA~~A~~~l~G~~l~gr~   75 (96)
T 2diu_A            8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----G-CSAILRFINQDSAERAQKRMENEDVFGNR   75 (96)
T ss_dssp             SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----T-TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred             cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----c-CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence            44457788998885533     55799999 5999995    2 667799999999999997 5999998865

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.0051  Score=46.45  Aligned_cols=72  Identities=22%  Similarity=0.171  Sum_probs=52.4

Q ss_pred             cEEEEecC----CCCCH-HHHHHHHhhcCcEEeecc--CCCC---CCeEEEEcCC----HHH----HHHHHH---hCCce
Q 031896            7 FLIVPFRF----PPADT-NLVLREFEKCGVILKHVP--GPRD---ANWMHILYQN----RSD----AQKALS---KNGMQ   65 (151)
Q Consensus         7 ~wVtVFGf----p~~~~-~~Vl~~F~~~G~I~~~~~--~p~~---~NWi~i~y~~----~~~----A~rAL~---~nG~i   65 (151)
                      +-|.|.|+    |+... ..|-.+|++||+|.+...  -|..   -...-|+|.+    +.+    |.+|+.   .||..
T Consensus         3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~   82 (136)
T 2j8a_A            3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF   82 (136)
T ss_dssp             CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred             cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence            45889999    88744 577788999999998752  1222   4889999996    333    899988   39999


Q ss_pred             ecCeEEEEEEECCh
Q 031896           66 INGVLIVGVKPLDP   79 (151)
Q Consensus        66 i~g~~mIGVkp~d~   79 (151)
                      |+|.- |-|.-=+.
T Consensus        83 I~Gr~-irV~ln~~   95 (136)
T 2j8a_A           83 IMGFK-FEVILNKH   95 (136)
T ss_dssp             ETTEE-EEEEECCT
T ss_pred             ecCcE-EEEEECcc
Confidence            98855 77775433

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.23  E-value=0.043  Score=40.21  Aligned_cols=76  Identities=16%  Similarity=-0.025  Sum_probs=58.8

Q ss_pred             cccCCcEEEEecCCCC--CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCC-HHHHHHHHHh---CCceecCeEEEEEE
Q 031896            2 TLISSFLIVPFRFPPA--DTNLVLREFEKCGVILKHVPGPRDANWMHILYQN-RSDAQKALSK---NGMQINGVLIVGVK   75 (151)
Q Consensus         2 ~~~~~~wVtVFGfp~~--~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~-~~~A~rAL~~---nG~ii~g~~mIGVk   75 (151)
                      ++..++-|-|-|.+..  ....+.+.|++||+|..+.. ..+.---+|+|.+ ..+|++|+..   +|..|.|.. +-+.
T Consensus        14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~-~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~-~~~e   91 (121)
T 1owx_A           14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF-VRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKE-VTWE   91 (121)
T ss_dssp             SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC-CTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSS-EEEE
T ss_pred             cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcE-EEEE
Confidence            4556777777778777  55678888899999998765 3355569999999 7888888887   688998854 8888


Q ss_pred             ECCh
Q 031896           76 PLDP   79 (151)
Q Consensus        76 p~d~   79 (151)
                      .+.-
T Consensus        92 vL~G   95 (121)
T 1owx_A           92 VLEG   95 (121)
T ss_dssp             ECCH
T ss_pred             ECCC
Confidence            8754

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=96.08  E-value=0.0088  Score=46.03  Aligned_cols=61  Identities=20%  Similarity=0.143  Sum_probs=48.5

Q ss_pred             CHHHHHHHHhhcCcEEeeccC----C-----CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECCh
Q 031896           18 DTNLVLREFEKCGVILKHVPG----P-----RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDP   79 (151)
Q Consensus        18 ~~~~Vl~~F~~~G~I~~~~~~----p-----~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~   79 (151)
                      ....+.++|++||+|.+....    .     .....+.|+|.+..+|++|+.. ||+.++|.. |-|.-++.
T Consensus       142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~-i~~~~~~~  212 (222)
T 3dxb_A          142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK-VVAEVYDQ  212 (222)
T ss_dssp             HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB-CEEEECCH
T ss_pred             HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE-EEEEEcCH
Confidence            456788999999999987531    0     1236899999999999999985 999999977 66666664

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=95.49  E-value=0.031  Score=47.50  Aligned_cols=54  Identities=20%  Similarity=0.399  Sum_probs=45.6

Q ss_pred             ecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCcee
Q 031896           12 FRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQI   66 (151)
Q Consensus        12 FGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii   66 (151)
                      .|++.. .-+.+.+.|++||+|.++.. +.+..+--|+|.+..+|++|+.. ||+.+
T Consensus        26 ~gl~~~~te~~L~~~F~~~G~V~~v~~-~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~   81 (345)
T 3tht_A           26 GGLGNGVSRNQLLPVLEKCGLVDALLM-PPNKPYSFARYRTTEESKRAYVTLNGKEV   81 (345)
T ss_dssp             CSGGGTCCHHHHHHHHHTTSCEEEEEC-CTTCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred             CCCCCCCCHHHHHHHHHhcCCeEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence            455544 67788999999999998876 44778999999999999999996 99877

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.57  E-value=0.37  Score=34.70  Aligned_cols=72  Identities=19%  Similarity=0.319  Sum_probs=57.3

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhh----c-CcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEK----C-GVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~----~-G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      .+..|-|-|+|++ .-+.+.-+|++    - |+|.+.+.-+   +=.-|+|.++..|++-|++--..|+| ..|-|.|+.
T Consensus         7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k~~H~L~~-~~LsV~P~~   82 (104)
T 2dhx_A            7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQADHELHG-AQLSLRPAP   82 (104)
T ss_dssp             CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTCSCCBSSS-SBCEEEECC
T ss_pred             CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcCCcceecC-eEEEEEcCC
Confidence            4678999999987 55588889988    3 5666666533   67799999999999999996667777 569999987


Q ss_pred             hH
Q 031896           79 PM   80 (151)
Q Consensus        79 ~~   80 (151)
                      +.
T Consensus        83 ~~   84 (104)
T 2dhx_A           83 PR   84 (104)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=92.64  E-value=0.28  Score=35.11  Aligned_cols=53  Identities=17%  Similarity=0.226  Sum_probs=39.3

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEE-eeccCCCCCCeEEEEcCCHHHHHHHHHh
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVIL-KHVPGPRDANWMHILYQNRSDAQKALSK   61 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~-~~~~~p~~~NWi~i~y~~~~~A~rAL~~   61 (151)
                      +..-|.+++||++ .+..|.+.|+.||.|. +..    +..=.-+.|.++..|..||+-
T Consensus        14 ~r~HVf~l~FP~ewKt~DI~~lFs~fggv~I~Wi----dDTsAlvvf~~~~~a~~al~~   68 (100)
T 1whv_A           14 KRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWI----DDTSAFVSLSQPEQVQIAVNT   68 (100)
T ss_dssp             CCCSEEEEECCTTCCHHHHHHHHTTTCSCCCEEE----ETTEEEEECSCHHHHHHHHHH
T ss_pred             CCCeEEEEeCChhhhhHHHHHHhhccCCEEEEEE----cCCeEEEEecCHHHHHHHHHh
Confidence            4456777899998 8899999999998443 111    112235889999999999883

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=91.60  E-value=0.1  Score=46.11  Aligned_cols=64  Identities=8%  Similarity=-0.017  Sum_probs=48.7

Q ss_pred             CcEEEEecCCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCe
Q 031896            6 SFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGV   69 (151)
Q Consensus         6 ~~wVtVFGfp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~   69 (151)
                      .+.|.|-+.+....+.+++||++||.|.++....+.++.+-|.|.++.+++.+|..-+....+.
T Consensus        53 ~rsv~v~~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~~~~p~~~~  116 (464)
T 3pq1_A           53 QRTVLIHCPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNGTHTPXXXX  116 (464)
T ss_dssp             HTEEEEEECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSSCCCCCCBC
T ss_pred             cceEEEEcCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhccCCCcccc
Confidence            4678888777778889999999999999988766788999999999999998888766555444

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=90.51  E-value=1.4  Score=32.30  Aligned_cols=77  Identities=22%  Similarity=0.237  Sum_probs=56.7

Q ss_pred             CCcEEEEecCCCCCHHHHHHH-Hhhc-----CcEEeeccCCCCCCeEEEEcCCHHHHHHHH-HhCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPADTNLVLRE-FEKC-----GVILKHVPGPRDANWMHILYQNRSDAQKAL-SKNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~~~Vl~~-F~~~-----G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL-~~nG~ii~g~~mIGVkp~   77 (151)
                      +++.|.+|+.|....+.=++. .+.+     |+|.+..-.| +-.=.-|.|.+...|-||. ..||..|.|.. |-|-..
T Consensus        20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p-DH~GAivef~d~~~AgKasLaL~G~ef~gr~-Lr~gTv   97 (117)
T 2l9w_A           20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS-DFNGAIIIFRDSKFAAKMLMILNGSQFQGKV-IRSGTI   97 (117)
T ss_dssp             TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET-TTTEEEEECSCHHHHHHHHHHHSSEEETTEE-EEEECH
T ss_pred             CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec-CCCceEEEEccchhhHHHHhhcCCeeecCeE-EEecCH
Confidence            367899999999866655544 4778     8888875434 3344568899998877765 99999999866 777777


Q ss_pred             ChHHHH
Q 031896           78 DPMQRQ   83 (151)
Q Consensus        78 d~~~~~   83 (151)
                      +++.++
T Consensus        98 ~eL~~~  103 (117)
T 2l9w_A           98 NDMKRY  103 (117)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            766544

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=89.29  E-value=0.29  Score=35.14  Aligned_cols=52  Identities=17%  Similarity=0.237  Sum_probs=37.8

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEE-eeccCCCCCCeEEEEcCCHHHHHHHHHh
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVIL-KHVPGPRDANWMHILYQNRSDAQKALSK   61 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~-~~~~~p~~~NWi~i~y~~~~~A~rAL~~   61 (151)
                      ..-|.+.+||++ .+..|.+.|+.||.|. +..    +..=.-+.|.++..|..||+-
T Consensus         5 R~HV~~l~FP~ewKt~Di~~lFs~fggv~I~Wi----dDTsAlvvf~~~~~a~~al~~   58 (101)
T 3ctr_A            5 SDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWI----DDTSAFVSLSQPEQVKIAVNT   58 (101)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHTTTSEEEEEEEE----ETTEEEEEEEEECHHHHHHHH
T ss_pred             CCeEEEEeCChhhhhHHHHHHHhccCCEEEEEE----cCCeEEEEecCHHHHHHHHHh
Confidence            456777799998 8899999999998554 222    112234678888888888873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	151
d1wwha1	81	d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus mu	9e-15
d2cpya1	103	d.58.7.1 (A:536-638) RNA-binding protein 12 {Human	7e-04
d1uawa_	77	d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [Tax	8e-04
d1b7fa2	85	d.58.7.1 (A:205-289) Sex-lethal protein {Drosophil	0.002
d1x0fa1	75	d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0	0.002
d2msta_	75	d.58.7.1 (A:) Neural RNA-binding protein Musashi-1	0.003
d1no8a_	78	d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu	0.004

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]} Length = 81

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.0 bits (153), Expect = 9e-15
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 12 FRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLI 71
          F FP A  + +L +F + G I          NWMHI YQ++  A+KALSK+G      ++
Sbjct: 10 FGFPQASASYILLQFAQYGNI-LKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIM 68

Query: 72 VGVKPLDP 79
          +GVKP   
Sbjct: 69 IGVKPCID 76

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 7e-04
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 22  VLREFEKCGVILKHVPGPRDAN-----WMHILYQNRSDAQKALSKNGMQINGVLIVGVKP 76
           VL+  E   V    V    D N        + ++N  DA+K+   +  ++NG     V  
Sbjct: 25  VLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAF-VHV 83

Query: 77  LDPMQRQALNERINSQG 93
           +     + + +   +QG
Sbjct: 84  VTLEDMREIEKNPPAQG 100

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.2 bits (78), Expect = 8e-04
 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 15 PPADTNLVLRE-FEKCGVILKHVPGPRDANWMH-----ILYQNRSDAQKALSKNGMQING 68
              T   LRE F + G + + +               + + +++   K L+++  +++ 
Sbjct: 9  SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDS 68

Query: 69 VLI 71
            I
Sbjct: 69 KTI 71

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 7/61 (11%)

Query: 15 PPADTNLVLRE-FEKCGVILKHVPGPRDANWMH-----ILYQNRSDAQKALSK-NGMQIN 67
          P   T+  L   F K G I++                 + Y  R +AQ+A+S  N +   
Sbjct: 15 PRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 74

Query: 68 G 68
          G
Sbjct: 75 G 75

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (76), Expect = 0.002
 Identities = 8/60 (13%), Positives = 16/60 (26%), Gaps = 6/60 (10%)

Query: 15 PPADTNLVLRE-FEKCGVILKHVPGPRDANWMH-----ILYQNRSDAQKALSKNGMQING 68
           P      +RE F   G +        +          I ++     +K + K    +  
Sbjct: 8  SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGL 67

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.8 bits (74), Expect = 0.003
 Identities = 8/63 (12%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 15 PPADTNLVLRE-FEKCGVILKHVPGPRDANWMH-----ILYQNRSDAQKALSKNGMQING 68
              T   ++  FE+ G +   +         H     + +++    +K    +  +IN 
Sbjct: 8  SVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 67

Query: 69 VLI 71
           ++
Sbjct: 68 KMV 70

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.6 bits (74), Expect = 0.004
 Identities = 11/60 (18%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 15 PPADTNLVLRE-FEKCG----VILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQING 68
              ++  ++E F + G      + +    R      + ++ ++DA KA+ + NG+ ++G
Sbjct: 9  DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	99.94
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	98.7
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.62
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.47
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	98.46
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.45
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	98.43
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	98.43
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	98.42
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	98.39
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	98.38
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	98.34
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	98.33
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	98.33
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	98.3
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	98.28
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	98.28
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	98.27
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.27
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	98.26
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	98.26
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	98.26
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	98.25
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.23
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	98.22
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	98.22
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	98.22
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	98.22
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	98.21
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.21
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	98.17
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	98.17
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	98.17
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	98.16
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.14
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.14
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	98.13
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.13
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	98.12
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	98.12
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	98.1
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	98.1
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	98.1
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	98.1
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	98.1
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	98.1
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	98.09
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	98.09
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	98.07
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	98.06
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.06
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	98.05
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	98.05
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.05
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	98.04
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	98.03
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	98.03
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	98.02
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	97.99
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	97.97
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	97.95
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	97.94
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	97.93
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	97.91
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	97.9
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	97.89
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	97.89
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	97.89
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	97.87
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	97.85
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	97.85
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	97.82
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	97.81
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	97.8
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	97.79
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	97.78
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	97.73
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	97.7
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	97.69
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	97.64
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	97.59
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	97.53
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	97.34
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	97.29
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	97.16
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	97.11
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	97.1
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	96.94

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2.5e-27  Score=163.26  Aligned_cols=76  Identities=39%  Similarity=0.675  Sum_probs=72.0

Q ss_pred             cCCcEEEEecCCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECChH
Q 031896            4 ISSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~~   80 (151)
                      ++++||+||||||+.++.+|++|++||+|+++.. +...||.+|+|+++.+|++||++||++|+|.+||||+||.+.
T Consensus         2 ~~~~wV~V~G~p~~~~~~il~~F~~~G~I~~~~~-~~~~~~~fV~f~~~~~A~~Al~~nG~~~~g~~~vgV~~~~~k   77 (81)
T d1wwha1           2 LDDTWVTVFGFPQASASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDK   77 (81)
T ss_dssp             GGGGEEEEECCCGGGHHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECCCH
T ss_pred             CcccEEEEECCChHHHHHHHHHHHhhhhhheEEe-cCCCCEEEEEEcccHHHHHHHhcCCCeECCcEEEEEEeCCCh
Confidence            5789999999999999999999999999999986 457899999999999999999999999999999999999775

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.3e-08  Score=67.13  Aligned_cols=80  Identities=16%  Similarity=0.067  Sum_probs=64.0

Q ss_pred             CcEEEEecCCCCC-HHHHHHHHhhcCcEEeec-c--CC--CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896            6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHV-P--GP--RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~-~--~p--~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~   79 (151)
                      .+.|.|-|+|.+. .+.|.++|++||.|.+.. .  ..  ....+..|.|.++.+|++||.+||..|+|.. |-|.++++
T Consensus         8 ~~~v~v~nLp~~~t~~~l~~~F~~~g~i~~~~~~~~~~~g~~~G~afV~F~s~~~a~~Al~~n~~~i~gr~-i~V~~~~~   86 (103)
T d2cpya1           8 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGRE-AFVHVVTL   86 (103)
T ss_dssp             CCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEE-EEEEEECH
T ss_pred             ceEEEEeCCCCCCCHHHHhhhhcccceEEEEEEEEeCCCCCcCccEEEEECCHHHHHHHHhcCCCeECCcE-EEEEECCH
Confidence            4678999999985 678999999999886532 1  11  1246899999999999999999999999975 99999988


Q ss_pred             HHHHHHh
Q 031896           80 MQRQALN   86 (151)
Q Consensus        80 ~~~~~l~   86 (151)
                      .+.....
T Consensus        87 ~~~~~~~   93 (103)
T d2cpya1          87 EDMREIE   93 (103)
T ss_dssp             HHHHHHH
T ss_pred             HHhhhhc
Confidence            6555443

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=9.7e-08  Score=62.41  Aligned_cols=70  Identities=19%  Similarity=0.280  Sum_probs=55.8

Q ss_pred             cEEEEecCCCC-CHHHHHHHHhhcCcEEeecc--CC-CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEEC
Q 031896            7 FLIVPFRFPPA-DTNLVLREFEKCGVILKHVP--GP-RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPL   77 (151)
Q Consensus         7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~--~p-~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~   77 (151)
                      +-|.|-++|++ ..+.|.++|++||.|.+...  .+ ....+..|.|+++.+|++||.+||..|+|.- |=|..+
T Consensus         1 Ttv~V~nlp~~~t~~~l~~~F~~~G~I~~v~~~~~~~~~~~~afV~F~~~~~a~~Al~~~~~~i~g~~-i~V~~~   74 (75)
T d2ghpa2           1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNE-IIVSHL   74 (75)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEE-CEEEEC
T ss_pred             CEEEEECCCCCCCHHHHHHHHhcCCceEEEEEEeeccccceEEEEEEcchHHhHHHHHhcCcEECCEE-EEEEEC
Confidence            35788899998 55688889999999987653  11 2334899999999999999999999998865 666654

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=6.5e-07  Score=59.46  Aligned_cols=74  Identities=19%  Similarity=0.185  Sum_probs=57.8

Q ss_pred             CCcEEEEecCCCCCH-H-HHHHHHhhcCcEEeeccC----CCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896            5 SSFLIVPFRFPPADT-N-LVLREFEKCGVILKHVPG----PRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP   76 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~-~Vl~~F~~~G~I~~~~~~----p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp   76 (151)
                      ..+-|.|-++|++.+ . .+.++|++||+|.++...    .++  .....|.|.+..+|++||+.||..+.|.. |=|..
T Consensus         3 e~~~l~V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~~n~~~~~gr~-l~V~~   81 (86)
T d2ghpa3           3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNRE-ISVSL   81 (86)
T ss_dssp             TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEE-EEEEE
T ss_pred             CCCEEEEECCCCCcccHHHHHHHHHhhhhccceeeecccCCccccceeeeEEECCHHHHHHHHhcCCCEECCEE-EEEEE
Confidence            467788999998864 3 466789999999887531    112  23789999999999999999999999865 88887


Q ss_pred             CCh
Q 031896           77 LDP   79 (151)
Q Consensus        77 ~d~   79 (151)
                      .++
T Consensus        82 a~~   84 (86)
T d2ghpa3          82 ADK   84 (86)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            764

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.7e-07  Score=62.63  Aligned_cols=74  Identities=14%  Similarity=0.130  Sum_probs=61.0

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECChH
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~~   80 (151)
                      ..+-|.|-|+|+.. .+.+.++|++||.|+++.......+|-.|+|.+..+|++||. ||..|.|.. |-|.+..+.
T Consensus         4 ~s~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~gfafV~f~~~~~a~~a~~-~~~~i~g~~-l~v~~a~~k   78 (88)
T d1wf0a_           4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG-EDLIIKGIS-VHISNAEPK   78 (88)
T ss_dssp             CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT-CEEEETTEE-EEEECCCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEeeccCceEEEEECCHHHHHHHHh-CCCEECCEE-eEEEeCCCC
Confidence            35678899999884 457788899999999887533457899999999999999996 889998865 889887653

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=4e-07  Score=62.31  Aligned_cols=71  Identities=14%  Similarity=0.152  Sum_probs=59.4

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      +.++|.|=++|+. .-+.+.++|++||+|.++.. +....+..|+|.+..+|++|+.+ ||..|.|.. |-|.++
T Consensus         9 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~I~~v~l-~~~kg~afV~f~~~~~A~~A~~~lng~~~~gr~-l~v~~a   81 (111)
T d1whxa_           9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL-PEGGITAIVEFLEPLEARKAFRHLAYSKFHHVP-LYLEWA   81 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB-CEEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHhhhhccCCccEEEe-eccCceEEEEEcCHHHHHHHHHHHcCCccCCCe-EEEEEC
Confidence            4578899999987 55678889999999999886 44567999999999999999975 999998865 667664

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.43  E-value=9.6e-07  Score=57.59  Aligned_cols=74  Identities=16%  Similarity=0.199  Sum_probs=58.3

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC---CCC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG---PRD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~---p~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      +++-|.|-|.|++ ..+.+.+.|++||.|.+....   .++  ..+-.|+|.++.+|++||+ .||..+.|.. |-|.+.
T Consensus         1 s~t~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~-l~v~~a   79 (82)
T d1b7fa1           1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKR-LKVSYA   79 (82)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEECCEE-EEEEEc
Confidence            3566899999998 556788899999999986531   122  3589999999999999996 5999998855 777776


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .|
T Consensus        80 ~p   81 (82)
T d1b7fa1          80 RP   81 (82)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=4e-07  Score=59.63  Aligned_cols=71  Identities=18%  Similarity=0.246  Sum_probs=58.7

Q ss_pred             CCcEEEEecCCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d   78 (151)
                      .++-|.|.|++ -..+.+.++|++||+|++.... ...+.-.|.|.++.+|++|+.. ||..+.|.. |-|.+..
T Consensus         4 ~~~ti~V~~~~-~te~~L~~~F~~~G~I~~v~~~-~~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~-l~V~~a~   75 (79)
T d2bz2a1           4 KGNTLYVYGED-MTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQ-LKVNIAR   75 (79)
T ss_dssp             CCCEEEEECSS-CCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB-CEEEECC
T ss_pred             CCCEEEEECCC-CCHHHHHHHHhccCccceeeec-cCCCEEEEEEcccHHHHHHHHHhCCCEECCEE-EEEEEec
Confidence            45678899996 5678899999999999998753 3567999999999999999965 999998855 6776654

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=4.2e-07  Score=62.91  Aligned_cols=73  Identities=12%  Similarity=0.116  Sum_probs=60.7

Q ss_pred             cEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC-----CCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECChH
Q 031896            7 FLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG-----PRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus         7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~-----p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~~   80 (151)
                      +-|.|-|.|++ ..+.|.++|++||+|.+..-.     .....+-.|.|.++.+|++||+.||..|+|.. |-|+++.+.
T Consensus        21 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~~~~~~l~G~~-i~V~~a~~k   99 (103)
T d1x4ba1          21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRV-VEPKRAVAR   99 (103)
T ss_dssp             TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEE-EEEECCSSC
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHhhCcccceeecccccCCCccCeEEEEECCHHHHHHHHHhCCCeECCEE-EEEEECccc
Confidence            56889999998 455888899999999987531     12346999999999999999999999998865 999988764

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=4.4e-07  Score=60.52  Aligned_cols=72  Identities=19%  Similarity=0.194  Sum_probs=60.6

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d   78 (151)
                      ..+.|.|-|+|++ ..+.|.+.|++||+|.+.... .+.+.-.|+|++..+|++|++. ||..|.|.. |-|....
T Consensus         7 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~i~~~-~~k~~afV~f~~~~~A~~A~~~l~g~~i~g~~-l~V~~A~   80 (86)
T d2cpja1           7 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQ-LRVRFAC   80 (86)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBC-CEEEESS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCceEeeee-cccceEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEECC
Confidence            3567999999998 556788899999999998763 4678999999999999999996 999998864 7887754

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=1.6e-06  Score=56.55  Aligned_cols=67  Identities=15%  Similarity=0.238  Sum_probs=53.2

Q ss_pred             EEEecCCCC-CHHHHHHHHhhcCcEEeeccCCC-C---CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896            9 IVPFRFPPA-DTNLVLREFEKCGVILKHVPGPR-D---ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP   76 (151)
Q Consensus         9 VtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~-~---~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp   76 (151)
                      +.|-++|++ ..+.+.++|++||.|.+...... .   ..+-.|+|.++.+|++|+. .||..++|.. |=|..
T Consensus         3 l~V~nLp~~~~~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~-l~V~~   75 (78)
T d1no8a_           3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRP-MNIQL   75 (78)
T ss_dssp             EEEESCCTTCCHHHHHHHHHHHSCEEEEEESCSSCCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEE-CEEEE
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeeccccceeEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEE
Confidence            678899998 55688889999999998764221 1   2399999999999999997 4999999866 55544

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.34  E-value=1.5e-06  Score=57.89  Aligned_cols=74  Identities=15%  Similarity=0.182  Sum_probs=57.4

Q ss_pred             cCCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC--C-CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896            4 ISSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG--P-RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP   76 (151)
Q Consensus         4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~--p-~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp   76 (151)
                      ..++-|.|-|+|++ ..+.+.+.|++||+|.+....  + ++  ..+..|.|.+..+|++||. .||..+.|.. |-|.+
T Consensus         5 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g~~-l~V~~   83 (88)
T d1rk8a_           5 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT-IQVDW   83 (88)
T ss_dssp             C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCcccccccccccccccccceeEEECCHHHHHHHHHHcCCCEECCEE-EEEEE
Confidence            35677889999998 455888899999999987531  1 22  2378999999999999997 5999998865 77766


Q ss_pred             CC
Q 031896           77 LD   78 (151)
Q Consensus        77 ~d   78 (151)
                      +.
T Consensus        84 a~   85 (88)
T d1rk8a_          84 CF   85 (88)
T ss_dssp             SE
T ss_pred             ec
Confidence            54

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.1e-06  Score=58.35  Aligned_cols=71  Identities=11%  Similarity=0.093  Sum_probs=57.2

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC--CCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG--PRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP   76 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~--p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp   76 (151)
                      ..+-|.|-|+|.+ ..+.+.++|++||.|.++...  .++  .....|.|.++.+|++||+.||..+.|.- |-|++
T Consensus         5 ~~rtvfV~nlp~~~te~~l~~~F~~~G~v~~v~l~~~~~~~~kG~afV~f~~~e~a~~al~~~~~~~~g~~-l~v~~   80 (85)
T d1zh5a2           5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD-LLILF   80 (85)
T ss_dssp             HTTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHTCCCCEETTEE-CEEEE
T ss_pred             CcCEEEEECCCCCCCHHHHHHHHHHhcccccceeeeeccCCcceEEEEEEcCHHHHHHHHHHCCCEECCEE-EEEEE
Confidence            3567899999998 555788899999999987542  122  24899999999999999999999998865 66665

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1e-06  Score=58.78  Aligned_cols=74  Identities=16%  Similarity=0.249  Sum_probs=58.8

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC---CCC--CeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP---RDA--NWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p---~~~--NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      +.+.|.|.|+|++.. +.|.+.|++||+|.+.....   ++.  .+..|.|.+..+|++|+.. ||..+.|.. |-|.+.
T Consensus         7 ~~~~i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~-i~v~~a   85 (90)
T d2cq0a1           7 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI-LNVEWA   85 (90)
T ss_dssp             SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE-CEEEES
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhcccccccccccccccccccceeEEECCHHHHHHHHHHhCCCEECCEE-EEEEee
Confidence            567899999999854 56777789999999875321   222  2899999999999999985 999998865 888876


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .|
T Consensus        86 kp   87 (90)
T d2cq0a1          86 KP   87 (90)
T ss_dssp             SC
T ss_pred             eC
Confidence            65

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=6.7e-07  Score=59.95  Aligned_cols=70  Identities=21%  Similarity=0.263  Sum_probs=55.4

Q ss_pred             CcccCCcEEEEecCCCCCHH-HHH---HHHhhcCcEEeeccC---C-----CCCCeEEEEcCCHHHHHHHHH-hCCceec
Q 031896            1 MTLISSFLIVPFRFPPADTN-LVL---REFEKCGVILKHVPG---P-----RDANWMHILYQNRSDAQKALS-KNGMQIN   67 (151)
Q Consensus         1 ~~~~~~~wVtVFGfp~~~~~-~Vl---~~F~~~G~I~~~~~~---p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~   67 (151)
                      |.++..+-|-|-|.|++.++ .++   ++|++||.|.+....   .     .......|+|.++.+|++|+. .||..+.
T Consensus         3 ~Rviq~n~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~   82 (89)
T d2cpia1           3 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD   82 (89)
T ss_dssp             CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred             eeEEecCEEEEECCCCccCHHHHHHHHHHhcccCCceEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEEC
Confidence            46778888999999999654 442   469999999987531   1     112578999999999999996 6999999


Q ss_pred             CeE
Q 031896           68 GVL   70 (151)
Q Consensus        68 g~~   70 (151)
                      |..
T Consensus        83 gr~   85 (89)
T d2cpia1          83 GRT   85 (89)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            876

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=3.6e-06  Score=54.63  Aligned_cols=73  Identities=18%  Similarity=0.197  Sum_probs=56.6

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC---CCCC--CeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG---PRDA--NWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~---p~~~--NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      .+-|.|=+.|++ ....+.+.|++||.|.++...   ..+.  .+-.|.|.++.+|++|++ .||..+.|.. |-|.+..
T Consensus         2 ~t~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~-l~v~~Ak   80 (82)
T d1fxla1           2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT-IKVSYAR   80 (82)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEECC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhCCcccccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEee
Confidence            456889999998 455788889999999986531   1222  378999999999999997 5999998865 7776654


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      |
T Consensus        81 P   81 (82)
T d1fxla1          81 P   81 (82)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4.4e-06  Score=56.02  Aligned_cols=74  Identities=18%  Similarity=0.199  Sum_probs=59.4

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC--C-CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG--P-RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~--p-~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+-|.|-|.|++ ..+.+.++|++||+|.++...  + ....+-.|.|.++.+|++||.. ||..+.|.. |-|.+..+
T Consensus        10 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~-l~V~~A~~   88 (93)
T d2cq3a1          10 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK-IEVNNATA   88 (93)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEE-CEEEECCS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcceeeeccccccccCCcceeEEEECCHHHHHHHHHHcCCCEECCEE-EEEEecCc
Confidence            4567889999998 455788889999999876531  1 1346999999999999999975 999999865 88888765

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.9e-06  Score=55.80  Aligned_cols=66  Identities=14%  Similarity=0.226  Sum_probs=53.1

Q ss_pred             EEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEE
Q 031896            9 IVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVK   75 (151)
Q Consensus         9 VtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVk   75 (151)
                      |-|=|+|++ .-+.+.++|++||+|.+..-..     ....+-.|.|.++.+|++||+.|+..|+|.. |=|+
T Consensus         2 lfV~nl~~~~te~~l~~~F~~~G~i~~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~~~~~~l~Gr~-i~V~   73 (75)
T d1hd0a_           2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV-IDPK   73 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCEEEEECCCBTTTTBCCSEEEEEESSHHHHHHHHHTCCCCBTTBC-CEEC
T ss_pred             EEEeCCCCcCCHHHHHHHHHhhccccccccccCCCCCCcCceEEEEECCHHHHHHHHhcCCCEECCCE-EEee
Confidence            567889998 5568889999999999875311     1246999999999999999999999998865 5554

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=3e-06  Score=55.09  Aligned_cols=73  Identities=21%  Similarity=0.301  Sum_probs=55.8

Q ss_pred             CcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            6 SFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      ++-|.|-++|++.+ +.+.+.|++||.|......+     .....-.|.|.++.+|++|++ .||..+.|.- |=|+..+
T Consensus         1 d~tl~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~-i~V~~a~   79 (81)
T d2ghpa1           1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYT-LVTKVSN   79 (81)
T ss_dssp             SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEE-CEEEECC
T ss_pred             CcEEEEECCCCcCCHHHHHHHHHHhCcEEeeeeecccccccccceeEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEcc
Confidence            35688999999854 56777799999997543211     123578999999999999997 5999998855 7787766


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      |
T Consensus        80 P   80 (81)
T d2ghpa1          80 P   80 (81)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.4e-06  Score=59.65  Aligned_cols=75  Identities=11%  Similarity=0.080  Sum_probs=60.5

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC---CC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG---PR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~---p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      +...|.|=|.|.+.+ +.|.++|++||.|......   ..  ..-.-.|.|.++.+|++||.+||..|.|.. |-|.++.
T Consensus        14 ~~~~v~v~nLP~~~te~dI~~~F~~~g~v~~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~~~~~~i~gR~-i~V~~~~   92 (104)
T d1wg5a_          14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY-IEIFKSS   92 (104)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC-CEEEEEC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCcceEEEEEeCCHHHHHHHHhhCCCEEcceE-EEEEECC
Confidence            456788889999964 5699999999998864321   11  124789999999999999999999999887 9999987


Q ss_pred             hH
Q 031896           79 PM   80 (151)
Q Consensus        79 ~~   80 (151)
                      +.
T Consensus        93 ~~   94 (104)
T d1wg5a_          93 RA   94 (104)
T ss_dssp             TT
T ss_pred             HH
Confidence            64

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3.3e-06  Score=56.76  Aligned_cols=74  Identities=12%  Similarity=0.123  Sum_probs=58.7

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC---CCCC--CeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG---PRDA--NWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~---p~~~--NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      ..+-|.|-|+|.+. -..|.++|++||.|.+....   .++.  .+-.|+|.++.+|++||+ ++..|+|.. |-|++.+
T Consensus         7 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~-~~~~l~Gr~-i~v~~a~   84 (90)
T d2cqga1           7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRW-CDCKLPN   84 (90)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEE-EEEECCC
T ss_pred             CCCeEEEECCCCCCCHHHHHHHHHhhcccceeeeccCCCCcccCCEEEEEECCHHHHHHHHh-cCCccCCEE-eEEEeCC
Confidence            45668899999984 45888999999999987531   1232  489999999999999998 567898865 8999887


Q ss_pred             hH
Q 031896           79 PM   80 (151)
Q Consensus        79 ~~   80 (151)
                      +.
T Consensus        85 ~k   86 (90)
T d2cqga1          85 SK   86 (90)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3.2e-06  Score=57.32  Aligned_cols=70  Identities=16%  Similarity=0.184  Sum_probs=57.5

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      .+-|.|-|+|++ ..+.+.+.|++||.|.+.... .+.+.-.|+|.++.+|++|+.. ||..|.|.- |=|.+.
T Consensus        18 ~~~l~v~nL~~~~te~~L~~~F~~fG~i~~v~i~-~~kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~-l~v~~a   89 (96)
T d1x4ga1          18 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF-PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHV-VKCYWG   89 (96)
T ss_dssp             CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEECC
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHhCCceEEEEE-ecceEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEc
Confidence            456889999997 556788889999999988753 3578999999999999999975 999998844 666554

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.9e-06  Score=58.70  Aligned_cols=71  Identities=14%  Similarity=0.152  Sum_probs=57.2

Q ss_pred             CcEEEEecCCCC--CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEEC
Q 031896            6 SFLIVPFRFPPA--DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPL   77 (151)
Q Consensus         6 ~~wVtVFGfp~~--~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~   77 (151)
                      .+-|.|.+.+|+  ..+.+.+.|++||+|.++..-......-.|.|++..+|++|+.. ||..|.|.. |-|...
T Consensus         2 ~~~l~V~nL~p~~~te~~L~~~F~~fG~I~~v~i~~~~kg~afV~f~~~~~A~~ai~~lng~~l~g~~-l~v~~s   75 (109)
T d2adca1           2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP-IRITLS   75 (109)
T ss_dssp             CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSB-CEEECC
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHhhccccceEEEEecccceEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEC
Confidence            356889999775  45679999999999999875444456899999999999999975 999998865 555553

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3.9e-06  Score=55.46  Aligned_cols=70  Identities=13%  Similarity=0.147  Sum_probs=56.3

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC---CC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG---PR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP   76 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~---p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp   76 (151)
                      .+-|.|-|+|.. .-+.+.++|++||+|.+....   .+  ..+...|.|.++.+|++||..||..|.|.. |=|+.
T Consensus         6 ~~~lfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~~~~~~i~Gr~-i~V~~   81 (84)
T d1l3ka1           6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV-VEPKR   81 (84)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEE-CEEEE
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhhccccceeecccccCCCcccEEEEEEcCHHHHHHHHHhCCCEECCEE-EEEEe
Confidence            356889999998 455888899999999886521   11  246899999999999999999999999976 66654

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=2.8e-06  Score=57.46  Aligned_cols=72  Identities=21%  Similarity=0.230  Sum_probs=58.6

Q ss_pred             CcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCe-EEEEEEECC
Q 031896            6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGV-LIVGVKPLD   78 (151)
Q Consensus         6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~-~mIGVkp~d   78 (151)
                      .+.|.|-|+|++. .+.|.+.|++||.|.+.... .+.++-.|+|.+..+|++|+.. ||..|.|. ..|-|...+
T Consensus        17 s~tl~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~-~~~~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l~v~~ak   91 (97)
T d1whya_          17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHV-KGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK   91 (97)
T ss_dssp             CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEEC-SSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhhcccceEeee-ccccEEEeccCCHHHHHHHHHHhCCCEeCCCceEEEEEeCC
Confidence            4779999999995 55777888999999988763 4678999999999999999976 99999764 446665543

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4.1e-06  Score=55.63  Aligned_cols=73  Identities=19%  Similarity=0.200  Sum_probs=58.4

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ...|.|-|.|++ ..+.+.+.|++||.|.+..-..   ....+-.|.|.+..+|++||. .||..|+|.. |-|.+..+
T Consensus         8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~-i~V~~a~~   85 (89)
T d1cvja2           8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK-VFVGRFKS   85 (89)
T ss_dssp             TTEEEEESCCSSCCHHHHHHHHHTTSCEEEEEECCBTTBCCSCEEEEESCHHHHHHHTTSSSEEEETTEE-EEEEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEeecCCCcceeEEEECCHHHHHHHHHHcCCCEECCEE-EEEEECCC
Confidence            456899999998 4557888999999998764311   124689999999999999996 5999998865 77887754

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=3.3e-06  Score=53.80  Aligned_cols=67  Identities=16%  Similarity=0.119  Sum_probs=52.5

Q ss_pred             EEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896            9 IVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP   76 (151)
Q Consensus         9 VtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp   76 (151)
                      |-|=|.|++ .-+.+.++|++||.|.+.....     .......|+|.+..+|++||..||..|+|.. |=|+.
T Consensus         2 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~~~~~~l~gr~-i~V~~   74 (75)
T d2msta_           2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKM-VECKK   74 (75)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTSCCSEECCBCCTTCTTSCCEEEEECSCHHHHHHHHHCSSCCBTTBC-CEEEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeeccccccCceeEEEECCHHHHHHHHhcCCCEECCeE-EEEEE
Confidence            567788888 4557888999999999865311     2345788999999999999999999999865 55543

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.9e-06  Score=58.18  Aligned_cols=72  Identities=10%  Similarity=0.054  Sum_probs=58.4

Q ss_pred             cEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC---C--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896            7 FLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP---R--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~   79 (151)
                      +-|.|-+.|.. ..+.|.++|++||+|.+.....   +  ....-.|.|.+..+|++||..||..|.|.. |=|++.++
T Consensus        19 ~tifV~nL~~~~te~~l~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~l~g~~~~G~~-l~V~~a~~   96 (101)
T d2cq4a1          19 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVP-IIVQASQA   96 (101)
T ss_dssp             TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEE-EEEEEHHH
T ss_pred             CEEEEECCCCCCCHHHHHHHHcCCCeEEEEEeeecCCCccccceEEEEECCHHHHHHHHHHCCCEECCEE-EEEEECCC
Confidence            56889999988 5568888999999998775321   1  234899999999999999999999999966 77887654

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=7.3e-07  Score=62.04  Aligned_cols=75  Identities=19%  Similarity=0.327  Sum_probs=60.3

Q ss_pred             CcEEEEecCCCCCHH-HHHHHHhhcCcEEeec---cCC--CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896            6 SFLIVPFRFPPADTN-LVLREFEKCGVILKHV---PGP--RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         6 ~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~---~~p--~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~   79 (151)
                      .+.|.|=|+|.+.+. .|.++|+.||.|.+..   ...  ....+..|.|.+..+|++||.+||..|+|.. |=|.++++
T Consensus        18 ~~~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~~~~~~~g~~~G~afVeF~~~e~a~~al~~~~~~i~gR~-i~V~~~~~   96 (112)
T d1wela1          18 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF-IQVHPITK   96 (112)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSC-BEEEEECH
T ss_pred             CeEEEEecCCCcCcHHHHhhHHhhccccccceeeecCcccceeeEEEEEECCHHHHHHHHHcCCCcCCCEE-EEEEEcCh
Confidence            456788899998655 8999999999886532   111  1235899999999999999999999999987 99999977


Q ss_pred             HH
Q 031896           80 MQ   81 (151)
Q Consensus        80 ~~   81 (151)
                      ..
T Consensus        97 ~~   98 (112)
T d1wela1          97 KG   98 (112)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=8.5e-06  Score=54.95  Aligned_cols=74  Identities=14%  Similarity=0.091  Sum_probs=58.4

Q ss_pred             CcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC---C--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP---R--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p---~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      .+-|.|=+.|... .+.|.++|++||+|++.....   +  ...+..|.|.+..+|++||. .||..|.|.. |-|.+..
T Consensus         8 ~~~lfV~nL~~~~t~~~l~~~F~~~g~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~-i~V~~a~   86 (99)
T d1whwa_           8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM-LHVLPST   86 (99)
T ss_dssp             CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE-EEEEECC
T ss_pred             CCEEEEECCCCcCCHHHHHHHHHhcCCceeeeecccccccccCcceEEEECCHHHHHHHHHHcCCCEECCEE-EEEEECC
Confidence            4558888999884 456777899999999876421   1  23589999999999999997 5999998865 8898876


Q ss_pred             hH
Q 031896           79 PM   80 (151)
Q Consensus        79 ~~   80 (151)
                      +.
T Consensus        87 ~~   88 (99)
T d1whwa_          87 IK   88 (99)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=9.8e-06  Score=55.65  Aligned_cols=73  Identities=16%  Similarity=0.179  Sum_probs=58.4

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCC--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPR--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      .+-|.|-+.|.. ..+.|.+.|++||+|+++....+  ......|+|.+..+|++|+. .||..|.|.. |-|....+
T Consensus         7 ~r~l~V~nLp~~~te~~l~~~F~~~G~v~~i~~~~~~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~-l~V~~a~~   83 (114)
T d2f9da1           7 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRY-LVVLYYNA   83 (114)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTEEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEECCH
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhhcCCeEeecccccCCcCCeEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEcCC
Confidence            456889999987 45688889999999998875222  23489999999999999995 6999999876 77776543

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=8.5e-06  Score=54.66  Aligned_cols=72  Identities=19%  Similarity=0.281  Sum_probs=56.0

Q ss_pred             cCCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC--C-CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEE
Q 031896            4 ISSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG--P-RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKP   76 (151)
Q Consensus         4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~--p-~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp   76 (151)
                      -..+.|.|-+.|+. ..+.+.+.|++||.|.++...  + ++  ..+-.|+|.++.+|++||+ .||..+.|.. |-|..
T Consensus         5 ~~s~tlfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~-i~V~~   83 (93)
T d1h2vz_           5 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRI-IRTDW   83 (93)
T ss_dssp             TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEE-CEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHCCcceeccccccccccccceEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEE
Confidence            35677888899997 455778889999999987531  1 12  2389999999999999997 5999998865 55654

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.17  E-value=6.2e-06  Score=54.07  Aligned_cols=70  Identities=9%  Similarity=0.137  Sum_probs=55.4

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEE
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVK   75 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVk   75 (151)
                      .+-|.|-|+|++ ..+.+.+.|++||+|.+....+...+.-.|.|.+..+|++|+.. ||..|.++--|-|.
T Consensus         8 ~~tl~V~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~i~v~   79 (83)
T d2b0ga1           8 NQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKIT   79 (83)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHTTSTTEEEEEECTTTCSCEEEEESSHHHHHHHHHHHTTCBSSTTCBCEEE
T ss_pred             CCEEEEECCCCCCCHHHHHhhhccCccEEEeeeecccceeEEEecCCHHHHHHHHHHhCCcEeCCCcEEEEE
Confidence            456889999998 45578889999999999876455567999999999999999985 99888543224443

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=7.2e-06  Score=53.54  Aligned_cols=65  Identities=20%  Similarity=0.274  Sum_probs=51.9

Q ss_pred             CcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC--CC-C--CCeEEEEcCCHHHHHHHHH-hCCceecCeE
Q 031896            6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG--PR-D--ANWMHILYQNRSDAQKALS-KNGMQINGVL   70 (151)
Q Consensus         6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~--p~-~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~   70 (151)
                      .+-|.|-|+|+.. .+.|.++|++||.|.++.-.  +. +  ...-.|.|.+..+|++||+ .||..|.|..
T Consensus         9 ~~~l~V~nL~~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr~   80 (83)
T d2cqca1           9 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR   80 (83)
T ss_dssp             GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCCccccccccccccccccceEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            4568899999984 45788889999999976521  11 1  2389999999999999996 6999999865

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=3.9e-06  Score=55.66  Aligned_cols=60  Identities=10%  Similarity=0.065  Sum_probs=50.4

Q ss_pred             EEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeE
Q 031896            9 IVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVL   70 (151)
Q Consensus         9 VtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~   70 (151)
                      |.|-|+|++. .+.+.++|++||+|++.....  .++-.|.|.+..+|++||. .||..|.|.-
T Consensus         3 vfV~nlp~~~~~~~l~~~F~~~G~v~~~~i~~--~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~   64 (87)
T d3begb1           3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYR--DGTGVVEFVRKEDMTYAVRKLDNTKFRSHE   64 (87)
T ss_dssp             EEEEECCSSCCTTHHHHHHGGGSCEEEEEECT--TSEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred             EEEECCCCcCCHHHHHHHHhhhcccccccccc--cceeeEEeCCHHHHHHHHHHhCCCEECCcE
Confidence            7788999984 457888999999999887532  3699999999999999995 6999998754

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=6.4e-06  Score=53.13  Aligned_cols=69  Identities=13%  Similarity=0.126  Sum_probs=54.7

Q ss_pred             cEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896            7 FLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP   76 (151)
Q Consensus         7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp   76 (151)
                      +-|-|=++|++ .-+.+.++|++||.|.+.....     .....-.|.|.++.+|++||..||..|+|.- |=|+.
T Consensus         3 r~lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~~~~al~~~~~~l~Gr~-i~V~~   77 (79)
T d1l3ka2           3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN-CEVRK   77 (79)
T ss_dssp             SEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEE-CEEEE
T ss_pred             CEEEECCCCCcCCHHHHHHHHHHhccccccccccCCCCcccccEEEEEEcCHHHHHHHHHhCCCEECCEE-EEEEE
Confidence            45778899998 4558889999999999765311     1235789999999999999999999999854 76654

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=8.2e-06  Score=54.11  Aligned_cols=75  Identities=15%  Similarity=0.156  Sum_probs=58.7

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccC--C-CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPG--P-RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p-~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      +.+-|.|-|+|++.. +.+.++|++||+|.+....  + ++  ..+..|.|.++.+|++|+. .||..|.|.. |-|.+.
T Consensus         4 ~~~tlfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~-l~v~~a   82 (89)
T d2cqba1           4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT-IRVNLA   82 (89)
T ss_dssp             CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE-EEEEEC
T ss_pred             CCcEEEEeCCCCcCCHHHHHHHHhhCCeEEecccccccccccccceeEEEECCHHHHHHHHHHcCCCEECCEE-EEEEEe
Confidence            356788999999854 4667779999999986531  1 12  3489999999999999996 5999998865 888887


Q ss_pred             ChH
Q 031896           78 DPM   80 (151)
Q Consensus        78 d~~   80 (151)
                      .|.
T Consensus        83 ~p~   85 (89)
T d2cqba1          83 KPM   85 (89)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            663

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.2e-05  Score=58.41  Aligned_cols=75  Identities=12%  Similarity=0.058  Sum_probs=59.5

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC---CCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG---PRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~---p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      ..+-|.|-|.|... -..|.+.|+.||.|......   .++  .++..|.|.++.+|++||+.||..|.|. .|=|++..
T Consensus        96 ~~~~i~V~~lp~~~te~~L~~~f~~~G~v~~~~i~~~~~~~~~~g~~fV~f~~~e~A~~Al~~~~~~~~G~-~i~V~~A~  174 (183)
T d1u1qa_          96 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGH-NCEVRKAL  174 (183)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHTSSCEEETTE-EEEEEECC
T ss_pred             ccceeEEccCCCcCCHHHHhhhhccCCceeeeeeecccccCccceeEEEEECCHHHHHHHHHhCCCeECCE-EEEEEecC
Confidence            34678999999874 45777888999999987521   112  3478999999999999999999999885 48899975


Q ss_pred             hH
Q 031896           79 PM   80 (151)
Q Consensus        79 ~~   80 (151)
                      +.
T Consensus       175 ~k  176 (183)
T d1u1qa_         175 SK  176 (183)
T ss_dssp             CH
T ss_pred             Cc
Confidence            54

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=5.3e-06  Score=56.57  Aligned_cols=74  Identities=19%  Similarity=0.220  Sum_probs=58.3

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC--C-CCC--CeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG--P-RDA--NWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~--p-~~~--NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      .++-|.|-+.|++ .-+.+.++|++||.|++....  + ++.  .|..|.|.++.+|++||. .||..|.|.- |-|.+.
T Consensus        17 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~-i~V~~a   95 (102)
T d2cpza1          17 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR-LKVQLK   95 (102)
T ss_dssp             TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE-CEEECC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhccccccceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCEE-EEEEEe
Confidence            3456899999998 556889999999999876431  1 222  399999999999999995 6999998854 778776


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      .+
T Consensus        96 ~~   97 (102)
T d2cpza1          96 RS   97 (102)
T ss_dssp             CC
T ss_pred             CC
Confidence            55

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2e-05  Score=52.30  Aligned_cols=74  Identities=19%  Similarity=0.158  Sum_probs=58.9

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeecc---CCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVP---GPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~---~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+-|.|=|+|+.. ...|.+.|++||.|.++..   ..++...-.|.|.+..+|++|++ .||..|.|.. |=|.+..+
T Consensus         7 ~~~tl~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~-i~v~~a~~   85 (90)
T d2cqia1           7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE-VKVNWATT   85 (90)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEE-EEEEECCC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCceeeeeecccCccceeeEEEECCHHHHHHHHHHcCCCEECCEE-EEEEEcCC
Confidence            45678899999984 4577788999999998753   12356789999999999999997 5999998865 77777643

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=2e-06  Score=56.21  Aligned_cols=67  Identities=9%  Similarity=0.163  Sum_probs=53.7

Q ss_pred             EEEecCCCC-CHHHHHHHHhhcCcEEeecc--CC-C--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEE
Q 031896            9 IVPFRFPPA-DTNLVLREFEKCGVILKHVP--GP-R--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP   76 (151)
Q Consensus         9 VtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~--~p-~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp   76 (151)
                      |-|=|.|++ ..+.+.++|++||+|.+...  .+ +  ....-.|+|.++.+|++||+.||..|+|.. |-|+.
T Consensus         3 lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~~~~~~i~Gr~-i~V~~   75 (77)
T d1uawa_           3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT-IDPKV   75 (77)
T ss_dssp             EEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCC-CEEEE
T ss_pred             EEEeCCCCcCCHHHHHHHHHHhCCcceeeeecccCCCCccceEEEEECCHHHHHHHHHcCCCEECCeE-EEEEE
Confidence            567799988 55688999999999987642  11 1  235889999999999999999999999865 77765

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.6e-06  Score=54.89  Aligned_cols=66  Identities=12%  Similarity=0.133  Sum_probs=52.3

Q ss_pred             EEEecCCCC-CHHHHHHHHhhcCcEEeeccC---C--CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEE
Q 031896            9 IVPFRFPPA-DTNLVLREFEKCGVILKHVPG---P--RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVK   75 (151)
Q Consensus         9 VtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~---p--~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVk   75 (151)
                      |-|=|+|++ ..+.+.++|++||+|.+..-.   .  ....+-.|+|.+..+|++||..++..|+|.. |=|+
T Consensus         2 lfVgnLp~~~te~~l~~~F~~~G~I~~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~~~~~~i~g~~-i~vk   73 (75)
T d1x0fa1           2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSK-CEIK   73 (75)
T ss_dssp             EEEESCCSSCCHHHHHHHHHHHSCEEEEECCCCTTTCCTTCCEEEEESSSHHHHHHTTCSSCCBTTBC-CEEE
T ss_pred             EEEcCCCCCCCHHHHHHHHHHhCCcccccccccccccccccEEEEEECCHHHHHHHHhhCCCEECCEE-eEEE
Confidence            567799998 455788889999999987531   1  1236899999999999999999999998865 5544

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.3e-06  Score=55.02  Aligned_cols=72  Identities=17%  Similarity=0.270  Sum_probs=57.1

Q ss_pred             cEEEEecCCCCCHH-HHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECChH
Q 031896            7 FLIVPFRFPPADTN-LVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus         7 ~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~~   80 (151)
                      +-|.|-++|++.++ .|.+.|++||.|...... ...+...|.|.++.+|++||.. ||..|.|.. |-|....|.
T Consensus         9 k~l~V~nLp~~~te~~l~~~F~~~g~i~~~~~~-~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~-i~V~~akP~   82 (86)
T d2cpda1           9 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVK-KIRDYAFVHFSNREDAVEAMKALNGKVLDGSP-IEVTLAKPV   82 (86)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEE-ECSSEEEEEESSHHHHHHHHHHHSSEEETTEE-EEEECCCCC
T ss_pred             CEEEEcCCCCCCCHHHHHHhhcccceeeeEEEc-cccEEEEEEeCCHHHHHHHHHHcCCCEECCEE-EEEEeccCC
Confidence            56889999998554 667889999887655432 3567999999999999999985 999998865 778776553

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3e-06  Score=57.79  Aligned_cols=69  Identities=17%  Similarity=0.209  Sum_probs=56.0

Q ss_pred             cEEEEecCCCC-CHH-HHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            7 FLIVPFRFPPA-DTN-LVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         7 ~wVtVFGfp~~-~~~-~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      +-|.|-++|+. ... .+.+.|++||.|++...   ..++-.|.|.++.+|++|+. .||..|.|.. |-|....+
T Consensus        16 ~~lfV~nL~~~~~~~~~L~~~F~~~G~i~~~~i---~rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~-l~V~~a~~   87 (98)
T d1wf2a_          16 SRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV---HKGFAFVQYVNERNARAAVAGEDGRMIAGQV-LDINLAAE   87 (98)
T ss_dssp             CCEEEEEECTTTCCHHHHHHSSTTSSCEEEEEE---ETEEEEEEESSHHHHHHHHHTTTTCEETTEE-CEEEETTS
T ss_pred             cEEEEeCCCcccCCHHHHHHHHhhcCCEEEEEE---eCCeEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEECCC
Confidence            45889999864 444 57788999999999875   24799999999999999997 4999998865 77777543

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.7e-05  Score=54.02  Aligned_cols=72  Identities=18%  Similarity=0.126  Sum_probs=57.2

Q ss_pred             cEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECCh
Q 031896            7 FLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d~   79 (151)
                      +-|.|=|.|.+ .-+.|.+.|++||+|.+.....     ....|..|.|.++.+|++||..++..|.|.. |-|.+..+
T Consensus        11 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~Gr~-l~V~~a~~   88 (103)
T d2cqda1          11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRK-ANVNLAYL   88 (103)
T ss_dssp             SEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEE-CEEEESTT
T ss_pred             cEEEEeCCCCcCcHHHHHHHHhhcccccceeccccccccccCCeEEEEECCHHHHHHHHHHCCCcCCCEE-EEEEEcCC
Confidence            34778899998 5557888899999999875321     1346999999999999999999877888865 77877654

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=5.8e-06  Score=56.18  Aligned_cols=72  Identities=15%  Similarity=0.184  Sum_probs=56.6

Q ss_pred             EEEEecCCCC-CHHHHHHHHhhcCcEEeeccC--C-CC--CCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECChH
Q 031896            8 LIVPFRFPPA-DTNLVLREFEKCGVILKHVPG--P-RD--ANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus         8 wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~--p-~~--~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~~   80 (151)
                      -|.|-|+|+. ....|.++|++||+|.+....  + ++  ..+..|+|.+..+|++||+. ||..|.|.. |-|.+..+.
T Consensus        10 tl~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~-i~V~~a~~~   88 (104)
T d1p1ta_          10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA-LRVDNAASE   88 (104)
T ss_dssp             CEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC-BEEEETTCT
T ss_pred             EEEEECCCCcCCHHHHHHhhhccccccccccccccceeccCCceEEEECCHHHHHHHHHHcCCCEECCEE-EEEEECCCC
Confidence            4778899998 455788889999999887531  1 12  13789999999999999976 999999876 778887543

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=5.4e-06  Score=54.84  Aligned_cols=73  Identities=19%  Similarity=0.220  Sum_probs=57.8

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      +.-|.|=+.|+. ....|.+.|++||.|.+.....     ....+..|.|.++.+|++||. .||..|.|.. |-|.+++
T Consensus         5 ~~kifV~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~-l~V~~a~   83 (90)
T d1x5sa1           5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ-IRVDQAG   83 (90)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC-CEEEEEE
T ss_pred             CCEEEEECCCCcCCHHHHHHhhhccccccceeeccccccccccceEEEEECCHHHHHHHHHHcCCCEECCEE-EEEEEcC
Confidence            344888899998 5567888899999999864211     123489999999999999996 5999999876 8888875


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus        84 ~   84 (90)
T d1x5sa1          84 K   84 (90)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.5e-06  Score=59.31  Aligned_cols=74  Identities=11%  Similarity=0.061  Sum_probs=54.8

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCC--CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGP--RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p--~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      +.+-|.|-|.|++ ..+.+.++|++||.|.......  .+  ..+..|+|.+..+|++|++ .||..|.|.- +.|.|.+
T Consensus        17 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr~-~~v~~~~   95 (101)
T d1x5oa1          17 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP-GVSAPTE   95 (101)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT-TSCCCSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhcccccceeeecccccccccceeEEeCCHHHHHHHHHHhCCCEECCcC-CccCCCC
Confidence            4567999999998 4557777889999998765321  11  3489999999999999997 5999998744 3444433


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      |
T Consensus        96 P   96 (101)
T d1x5oa1          96 P   96 (101)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=98.07  E-value=4.7e-06  Score=56.08  Aligned_cols=76  Identities=17%  Similarity=0.157  Sum_probs=61.1

Q ss_pred             cCCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECChH
Q 031896            4 ISSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus         4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~~   80 (151)
                      -+.+-|.|-+.|+. .-+.|.++|++||.|...........+..|.|.+..+|++||. .||..|.|.. |=|.++++.
T Consensus        14 ~~~~~l~V~nL~~~~te~~l~~~F~~~g~v~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~-i~V~~a~~k   91 (96)
T d1fjca_          14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS-VSLYYTGEK   91 (96)
T ss_dssp             TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE-EEEEECSSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcccceeeeecCccccEEEEEeCCHHHHHHHHHHcCCCEECCEE-EEEEEeCCC
Confidence            35677999999988 4557888999999998664322235789999999999999996 6999999866 888887663

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.4e-05  Score=54.02  Aligned_cols=72  Identities=13%  Similarity=0.061  Sum_probs=56.3

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC----CCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG----PRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~----p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      .+-|.|-++|.+ ....|.++|++|| |++....    ..+  ..+..|+|.+..+|++|+..||..|.|.. |=|.+..
T Consensus        15 ~~~v~V~nLp~~~te~~l~~~f~~~g-~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~~~~~~~~~gr~-l~V~~a~   92 (104)
T d1wi8a_          15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKR-IRVDVAD   92 (104)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEE-CEEEECC
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHhc-cccceeeeeeccCCCcceeeeEEECCHHHHHHHHHcCCCEECCEE-EEEEECC
Confidence            367889999998 4557888899999 6554321    122  35999999999999999999999998865 8888776


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus        93 ~   93 (104)
T d1wi8a_          93 Q   93 (104)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=1.5e-05  Score=53.43  Aligned_cols=73  Identities=14%  Similarity=0.139  Sum_probs=57.9

Q ss_pred             CcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccCC----CC--CCeEEEEcCCHHHHHHHHHh--CCceecCeEEEEEEE
Q 031896            6 SFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPGP----RD--ANWMHILYQNRSDAQKALSK--NGMQINGVLIVGVKP   76 (151)
Q Consensus         6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p----~~--~NWi~i~y~~~~~A~rAL~~--nG~ii~g~~mIGVkp   76 (151)
                      .+-|.|-+.|++. -+.+.+.|++||.|.+.....    ++  ..+-.|.|.+..+|++||..  ||..|.|.- |-|..
T Consensus         8 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~-l~V~~   86 (94)
T d2cpha1           8 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR-LVLEW   86 (94)
T ss_dssp             CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB-CEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEECCEE-EEEEE
Confidence            4558899999984 457888899999999875311    12  35899999999999999984  999998865 88888


Q ss_pred             CCh
Q 031896           77 LDP   79 (151)
Q Consensus        77 ~d~   79 (151)
                      +++
T Consensus        87 A~~   89 (94)
T d2cpha1          87 ADS   89 (94)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            765

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.05  E-value=1.1e-05  Score=57.37  Aligned_cols=72  Identities=21%  Similarity=0.193  Sum_probs=57.5

Q ss_pred             cEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC---CCC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            7 FLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG---PRD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~---p~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      +-|.|-++|++ ....|.+.|++||+|.++...   .++  .++..|+|.+..+|++||. .||..|+|.. |-|....+
T Consensus        43 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~-l~V~~a~~  121 (139)
T d1u6fa1          43 RNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR-LKVALAAS  121 (139)
T ss_dssp             SEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE-EEEEESSC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhhccccccccccccccccccceeeEEECCHHHHHHHHHHhCCCEECCEE-EEEEEcCC
Confidence            56999999997 455788899999999986531   112  3589999999999999997 5999999876 77877654

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.1e-05  Score=54.00  Aligned_cols=74  Identities=11%  Similarity=0.132  Sum_probs=59.1

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC---CC--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECC
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG---PR--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~---p~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d   78 (151)
                      .+-|.|-|+|.. ..+.+.+.|++||.|++..-.   .+  ...+-.|.|.+..+|++||+ .||..|.|.. |=|.+..
T Consensus         9 ~~tlfV~nLp~~~t~~~l~~~F~~~G~v~~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~A~   87 (93)
T d1x5ua1           9 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP-IRVNKAS   87 (93)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB-CEEEETT
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHhCCccccceeecccccccccceEEEECCHHHHHHHHHHcCCCEECCEE-EEEEEcC
Confidence            456888899998 556788889999999987431   11  23499999999999999996 5999998866 7888877


Q ss_pred             hH
Q 031896           79 PM   80 (151)
Q Consensus        79 ~~   80 (151)
                      +.
T Consensus        88 ~~   89 (93)
T d1x5ua1          88 AH   89 (93)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=5.9e-06  Score=54.13  Aligned_cols=69  Identities=19%  Similarity=0.253  Sum_probs=52.6

Q ss_pred             EEecCCCC-CHHHHHHHHhhcCcEEeeccC---CCCC-----CeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECCh
Q 031896           10 VPFRFPPA-DTNLVLREFEKCGVILKHVPG---PRDA-----NWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDP   79 (151)
Q Consensus        10 tVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~---p~~~-----NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~   79 (151)
                      .|-|.|.+ ..+.+.++|++||.|.+....   ..+.     ..-.|+|.++.+|++|++. ||..+.|.. |-|...++
T Consensus         2 fV~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~-i~V~~a~~   80 (85)
T d2cpfa1           2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK-LEVRISER   80 (85)
T ss_dssp             EEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE-CEEECSSC
T ss_pred             EEcCCCCCCCHHHHHHHHHHhCCccccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEECCC
Confidence            57788888 455788889999999876421   1222     2578999999999999965 999999875 77877643

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=1.1e-05  Score=54.80  Aligned_cols=64  Identities=14%  Similarity=0.159  Sum_probs=53.2

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeE
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVL   70 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~   70 (151)
                      +.+-|.|-++|++ ..+.+.++|++||+|++.....  .++..|.|.+..+|++||. .||..|.|.-
T Consensus        14 ~~~~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i~~--~g~afV~f~~~~~a~~Ai~~lng~~~~g~~   79 (98)
T d1wg4a_          14 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQK--DGMGMVEYLRKEDMEYALRKLDDTKFRSHE   79 (98)
T ss_dssp             CSCEEEEECCCSSCCHHHHHHHHTTSSCEEEEEEET--TTEEEEEESSHHHHHHHHHHHSSEEEECTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhhcccccccccc--cceEEEEECCHHHHHHHHHHhCCCEeCCeE
Confidence            4566999999998 5568888999999999877532  3699999999999999996 5999998754

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.5e-05  Score=51.78  Aligned_cols=70  Identities=19%  Similarity=0.195  Sum_probs=54.3

Q ss_pred             EEEecCCCCCH-HHHHHHHhhcCcEEeec--c--CCC--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            9 IVPFRFPPADT-NLVLREFEKCGVILKHV--P--GPR--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         9 VtVFGfp~~~~-~~Vl~~F~~~G~I~~~~--~--~p~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      |-|-|.|++.+ +.+.+.|++||.|++..  .  ..+  ...+-.|.|.++.+|++||+ .||..+.|.- |-|.+..+
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~-l~v~~a~~   78 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP-ITVSYAFK   78 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE-CEEEESCC
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhCceeeeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECCEE-EEEEEecC
Confidence            56788898844 57788899999997642  1  111  23589999999999999996 6999999876 88888765

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=1.2e-05  Score=53.51  Aligned_cols=75  Identities=11%  Similarity=0.072  Sum_probs=57.5

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCC-----CCCCeEEEEcCCHHHHHHHHHh-------CCceecCeEE
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGP-----RDANWMHILYQNRSDAQKALSK-------NGMQINGVLI   71 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p-----~~~NWi~i~y~~~~~A~rAL~~-------nG~ii~g~~m   71 (151)
                      .++-|.|-|.|++.+ +.|.++|++||.|.+.....     ....+..|.|.++.+|.+||+.       +|..+.|.. 
T Consensus         7 ~~~tlfV~nLp~~~te~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~-   85 (98)
T d1x4ha1           7 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ-   85 (98)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE-
T ss_pred             CCCEEEEcCCCCcCCHHHHHHHHhccccceeeeeccccccccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEE-
Confidence            456688999999854 57777899999998775421     1235899999999999999984       578888865 


Q ss_pred             EEEEECChH
Q 031896           72 VGVKPLDPM   80 (151)
Q Consensus        72 IGVkp~d~~   80 (151)
                      |-|.+..+.
T Consensus        86 l~v~~a~~k   94 (98)
T d1x4ha1          86 LKVDLAVTR   94 (98)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEECCCC
Confidence            778776553

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.4e-06  Score=58.26  Aligned_cols=74  Identities=15%  Similarity=0.136  Sum_probs=56.8

Q ss_pred             cCCcEEEEecCCCCCH-HHHHHHHhhcCcEEeec--cCCC--CCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896            4 ISSFLIVPFRFPPADT-NLVLREFEKCGVILKHV--PGPR--DANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~--~~p~--~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      ...++|.|=|.|.+.+ +.|.++|+.||.+ ++.  ....  ...+-.|.|.++.+|++||.+||..|.|.. |-|.+..
T Consensus        13 ~~~~~v~v~nLp~~~te~dl~~~F~~~~~~-~v~~~~~~~g~~~G~afVeF~~~~~a~~Al~~~~~~i~gR~-I~V~~s~   90 (102)
T d1weza_          13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRY-VELFLNS   90 (102)
T ss_dssp             SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSC-CEEEEEC
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHhccCcc-eeeeEEecCCcceEEEEEEECCHHHHHHHHHcCCCEECCEE-EEEEEcC
Confidence            3567899999999854 5777888999843 322  1112  245889999999999999999999999987 7777765


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus        91 ~   91 (102)
T d1weza_          91 T   91 (102)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=4.6e-06  Score=55.15  Aligned_cols=72  Identities=14%  Similarity=0.072  Sum_probs=57.6

Q ss_pred             EEEEecCCCCC-HHHHHHHHhhcCcEEeeccC---C--CCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECChH
Q 031896            8 LIVPFRFPPAD-TNLVLREFEKCGVILKHVPG---P--RDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDPM   80 (151)
Q Consensus         8 wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~---p--~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~~   80 (151)
                      -|-|=|.|+.. -+.+.++|++||+|.+....   .  ....+-.|+|.++.+|++|+.. ||..|.|.- |-|.+.++.
T Consensus         3 rlfV~nlp~~~te~~l~~~F~~~G~v~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~-l~V~~A~~~   81 (85)
T d2u2fa_           3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK-LLVQRASVG   81 (85)
T ss_dssp             CEEEETCCSSCCSHHHHHHHTSSSCEEEEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSC-CEEEECCCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCccceEEeeccccccccceeEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEECCCC
Confidence            36788998884 45788899999999987531   1  2358999999999999999994 999998876 888877653

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.8e-05  Score=52.05  Aligned_cols=65  Identities=17%  Similarity=0.189  Sum_probs=51.1

Q ss_pred             CCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC--C-CCC--CeEEEEcCCHHHHHHHHH-hCCceecCe
Q 031896            5 SSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG--P-RDA--NWMHILYQNRSDAQKALS-KNGMQINGV   69 (151)
Q Consensus         5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~--p-~~~--NWi~i~y~~~~~A~rAL~-~nG~ii~g~   69 (151)
                      .++-+.|-|.|+.. .+.+.+.|++||+|.+..-.  + ++.  .+-.|+|.++.+|++|++ .||..+.|.
T Consensus         5 k~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~   76 (85)
T d1fxla2           5 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA   76 (85)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCccccccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCC
Confidence            34568899999984 45778889999999986531  1 222  388999999999999997 599999873

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.8e-05  Score=52.00  Aligned_cols=75  Identities=15%  Similarity=0.168  Sum_probs=57.6

Q ss_pred             cCCcEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC-------------CCCCCeEEEEcCCHHHHHHHHHh-CCceecC
Q 031896            4 ISSFLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG-------------PRDANWMHILYQNRSDAQKALSK-NGMQING   68 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~-------------p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g   68 (151)
                      ...+-|.|-|.|... ...|.++|++||.|......             .....+..|.|.++.+|++|+.. ||..|.|
T Consensus         6 ~~~~~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g   85 (101)
T d2cpea1           6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG   85 (101)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCEEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEECC
Confidence            356789999999985 45788889999998543210             01236899999999999999985 9999998


Q ss_pred             eEEEEEEECCh
Q 031896           69 VLIVGVKPLDP   79 (151)
Q Consensus        69 ~~mIGVkp~d~   79 (151)
                      .- |-|.+..+
T Consensus        86 r~-i~V~~a~~   95 (101)
T d2cpea1          86 SK-LKVSLARK   95 (101)
T ss_dssp             EE-CEEECSSC
T ss_pred             EE-EEEEEcCC
Confidence            66 77777644

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=1.9e-05  Score=52.74  Aligned_cols=70  Identities=23%  Similarity=0.206  Sum_probs=56.9

Q ss_pred             CCcEEEEecCCCC-C-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH---hCCceecCeEEEEEEE
Q 031896            5 SSFLIVPFRFPPA-D-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS---KNGMQINGVLIVGVKP   76 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~---~nG~ii~g~~mIGVkp   76 (151)
                      ..+-|.|-|+|.. . -+.+++.|+.||+|.++... ...|.-.|.|++..+|+.|+.   .|+..+.|.- |=|..
T Consensus         7 ~sr~v~v~nl~~~~~t~~eL~~lF~~fG~I~~i~i~-~~k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~-l~V~~   81 (89)
T d1x4da1           7 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKP-VRVHL   81 (89)
T ss_dssp             CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEE-CEEEE
T ss_pred             CCcEEEEECCCCCcCCHHHHHHHHHhhCCeEEEEee-ccceEEEEEEcchhhHHHHHHHHhhCCCccCCce-EEEEE
Confidence            4567899999986 4 46799999999999999863 467899999999999999986   4888888854 44444

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=7.2e-06  Score=55.80  Aligned_cols=70  Identities=23%  Similarity=0.199  Sum_probs=57.1

Q ss_pred             CcEEEEecCCCC--CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH---hCCceecCeEEEEEEEC
Q 031896            6 SFLIVPFRFPPA--DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS---KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         6 ~~wVtVFGfp~~--~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~---~nG~ii~g~~mIGVkp~   77 (151)
                      ++-|.|.++|.+  ..+.+.+.|++||.|.++... .+.|...|.|.+..+|++|+.   .|+..+.|.. |-|...
T Consensus        18 ~~~l~v~nLp~~~~te~~l~~~F~~fG~V~~v~~~-~~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~-l~V~~s   92 (99)
T d1x4fa1          18 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRC-VKVDLS   92 (99)
T ss_dssp             CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC-CEEEEE
T ss_pred             CCEEEEeCCcCCccCHHHHHhhhccccceeEEEEe-ecCCcEEEEecchHHHHHHHHHHhcCCceECCEE-EEEEEc
Confidence            456889999975  347899999999999998763 367899999999999999985   7888888875 555543

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.9e-05  Score=52.49  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=57.1

Q ss_pred             CcEEEEecCCCCCHHHHH-----HHHhhcCcEEeeccCCC--CCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            6 SFLIVPFRFPPADTNLVL-----REFEKCGVILKHVPGPR--DANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         6 ~~wVtVFGfp~~~~~~Vl-----~~F~~~G~I~~~~~~p~--~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      .+-|.|=|+|++..+.-|     ++|++||+|.++....+  ..+...|+|.+..+|++|++ .||..+.|.. |=|.+.
T Consensus         3 ~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~~~~~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g~~-l~v~~a   81 (91)
T d1nu4a_           3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP-MRIQYA   81 (91)
T ss_dssp             CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE-CEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhcccccccceEEeeeccCCCceEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEe
Confidence            356889999999765443     56899999998764211  25789999999999999996 5999998865 777776


Q ss_pred             Ch
Q 031896           78 DP   79 (151)
Q Consensus        78 d~   79 (151)
                      ++
T Consensus        82 k~   83 (91)
T d1nu4a_          82 KT   83 (91)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.3e-05  Score=52.24  Aligned_cols=70  Identities=14%  Similarity=0.139  Sum_probs=56.0

Q ss_pred             EEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCc-eecCeEEEEEEECChH
Q 031896            9 IVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGM-QINGVLIVGVKPLDPM   80 (151)
Q Consensus         9 VtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~-ii~g~~mIGVkp~d~~   80 (151)
                      |.|-++|++. .+.+.+.|++||.|++.... ...++-.|.|.++.+|++|++ .||. .+.|.. |-|.+..|.
T Consensus         4 l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~-~~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~-i~V~~a~~k   76 (80)
T d2cqha1           4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKI-MEVDYSVSK   76 (80)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEE-CEEEECCCC
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCcEEEeEEe-cccceEEEEECCHHHHHHHHHHhCCCeEECCEE-EEEEEcCCc
Confidence            6788999884 45788889999999876542 245799999999999999996 5997 588865 888887653

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4.7e-05  Score=50.82  Aligned_cols=72  Identities=19%  Similarity=0.245  Sum_probs=56.9

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC--CCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG--PRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~--p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      +.+-|.|=++|++ ..+.|.++|++||.|......  .....+-.|.|.++.+|++|++ .||..|.|.- |=|.+.
T Consensus        13 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~-l~V~~a   88 (95)
T d1x4aa1          13 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR-LRVEFP   88 (95)
T ss_dssp             CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE-CEEECC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhcCCceEEEEecccccccceEEEEECCHHHHHHHHHHhCCCEECCEE-EEEEec
Confidence            3456889999998 456888899999999987542  2345789999999999999997 5999998865 555543

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=97.89  E-value=1.5e-05  Score=53.36  Aligned_cols=72  Identities=11%  Similarity=0.114  Sum_probs=56.4

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeecc----CCCCCCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVP----GPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~----~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~   77 (151)
                      ..+-|.|-|+|++ ..+.+.++|++||.|.....    .......-.|.|.++.+|++||..||..+.|.. |-|.+.
T Consensus        12 ~~~~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~g~~kg~afv~F~~~e~a~~Al~~~g~~~~g~~-i~V~~a   88 (91)
T d1fjeb1          12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNE-IKLEKP   88 (91)
T ss_dssp             SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEE-EEEECC
T ss_pred             CCcEEEEeCccCcchHHHHHHHHhcCCcEEEeeeeecCCCCccEEeEEeeCCHHHHHHHHhcCCcEECCEE-EEEEec
Confidence            3456889999998 55688889999998875432    012346999999999999999999999999865 666554

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=7.7e-06  Score=51.93  Aligned_cols=62  Identities=15%  Similarity=0.187  Sum_probs=48.5

Q ss_pred             EEEecCCCCCH-HHHHHHHhhcCcEEeeccC-----CCCCCeEEEEcCCHHHHHHHHH-hCCceecCeE
Q 031896            9 IVPFRFPPADT-NLVLREFEKCGVILKHVPG-----PRDANWMHILYQNRSDAQKALS-KNGMQINGVL   70 (151)
Q Consensus         9 VtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~-----p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~   70 (151)
                      |.|-|.|++.+ +.|.+.|++||.|.+....     ........|+|.++.+|++|++ .||..|.|..
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr~   69 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM   69 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhccccccccccccccccccceeEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            56888999854 4777788999999886421     1234578999999999999996 6999998754

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=3.7e-05  Score=52.26  Aligned_cols=73  Identities=12%  Similarity=0.006  Sum_probs=57.6

Q ss_pred             cCCcEEEEecCCCCCHH-HHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH---hCCceecCeEEEEEEECC
Q 031896            4 ISSFLIVPFRFPPADTN-LVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS---KNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         4 ~~~~wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~---~nG~ii~g~~mIGVkp~d   78 (151)
                      .....|.|-|+|+..+. .|++.|++||.|.++... ...+.-.|.|++..+|++|+.   .|+..+.|.- |=|...+
T Consensus        13 ~ps~~l~v~nlp~~~te~~l~~~F~~fG~I~~~~~~-~~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~-l~v~~s~   89 (104)
T d1wexa_          13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM-PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQ-AFFNYST   89 (104)
T ss_dssp             CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB-CEEEECS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHhhhhcccceEEEEE-ecceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEE-EEEEEcC
Confidence            34678899999998655 799999999999998764 357889999999999999995   3676776643 5555543

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=4.7e-05  Score=49.07  Aligned_cols=66  Identities=12%  Similarity=0.061  Sum_probs=51.3

Q ss_pred             EEEecCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            9 IVPFRFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         9 VtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      |.|-+.|++ ..+.+.+.|++||.+..+..  ...+.-.|.|.++.+|++|+. .||..+.|.. |-|...
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~g~~~~~~~--~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~-l~V~~a   68 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVD--KYKGTAFVTLLNGEQAEAAINTFHQSRLRERE-LSVQLQ   68 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHHTTEESSSCE-EEEEEC
T ss_pred             CEEeCCCCcCCHHHHHHHHhcccccceeec--ccceeEEEEECCHHHHHHHHHHhCCccCCCCE-EEEEEe
Confidence            568899998 45577888999994443332  367899999999999999995 7999999876 555543

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=3.9e-05  Score=50.84  Aligned_cols=70  Identities=16%  Similarity=0.043  Sum_probs=55.3

Q ss_pred             CcEEEEecCCCCC-HHHHHHHHhhcC-cEEeeccCCCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896            6 SFLIVPFRFPPAD-TNLVLREFEKCG-VILKHVPGPRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus         6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G-~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      .+-|.|-++|++. ...+.++|++|| .+++..   ...++-.|+|.++.+|++|+. .||..|.|.. |-|....+
T Consensus         5 s~~i~V~nLp~~~t~~~l~~lF~~~G~~~~~~~---~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~-l~V~~a~~   77 (88)
T d1wg1a_           5 SSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKD-LIVQLQPT   77 (88)
T ss_dssp             CCCEEEESCCSSCCHHHHHHHTCSSCCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEE-EEEEECCC
T ss_pred             CCEEEEeCCCCccChHHHHHHHHhcCceeeeee---ccCCceEEEECCHHHHHHHHHHhCCCEECCEE-EEEEEcCC
Confidence            4568999999985 457888899999 333333   246789999999999999996 5999999866 88877643

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=6.2e-05  Score=48.72  Aligned_cols=68  Identities=22%  Similarity=0.207  Sum_probs=53.1

Q ss_pred             EEEecCCCCCH-HHHHHHHhhcCcEEeeccC--C-CC--CCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEEC
Q 031896            9 IVPFRFPPADT-NLVLREFEKCGVILKHVPG--P-RD--ANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPL   77 (151)
Q Consensus         9 VtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~--p-~~--~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~   77 (151)
                      +-|-+.|+..+ +.+.+.|++||.|.+..-.  + ++  ..+-.|+|.++.+|++|+. .||..+.|.. |=|.+.
T Consensus         3 lfV~nL~~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~-i~v~~a   77 (80)
T d1cvja1           3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP-VRIMWS   77 (80)
T ss_dssp             EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEE-CEEEEC
T ss_pred             EEEeCCCCcCCHHHHHHHHHHhCCEeEEEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEECCEE-EEEEEe
Confidence            56788999854 4677778999999987531  1 22  2599999999999999996 5999999865 667665

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=5.6e-06  Score=57.48  Aligned_cols=54  Identities=19%  Similarity=0.338  Sum_probs=48.1

Q ss_pred             CCCCCHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHhCCceecCeE
Q 031896           14 FPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVL   70 (151)
Q Consensus        14 fp~~~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~   70 (151)
                      |+++..+.+|+.|++||+|+-.+.   -..=|-|+|.+-.+|..||++||..+.|..
T Consensus        33 FDe~l~~~Llq~l~~~GeViLvRF---v~d~mwVTF~dG~SAL~al~l~g~~v~G~~   86 (95)
T d1ufwa_          33 FPEDLRTELMQTLGSYGTIVLVRI---NQGQMLVTFADSHSALSVLDVDGMKVKGRA   86 (95)
T ss_dssp             CCHHHHHHHHHHHHHHSCCSEEEE---ETTEEEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred             CCHHHHHHHHHHHhhCCeEEEEEE---eCCeEEEEECCcHHHHHHhccCCeEEcceE
Confidence            777889999999999999998886   446677899999999999999999998866

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=3.1e-05  Score=52.92  Aligned_cols=60  Identities=22%  Similarity=0.205  Sum_probs=49.1

Q ss_pred             HHHHHHHHhhcCcEEeeccC-------CCCCCeEEEEcCCHHHHHHHHH-hCCceecCeEEEEEEECCh
Q 031896           19 TNLVLREFEKCGVILKHVPG-------PRDANWMHILYQNRSDAQKALS-KNGMQINGVLIVGVKPLDP   79 (151)
Q Consensus        19 ~~~Vl~~F~~~G~I~~~~~~-------p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~g~~mIGVkp~d~   79 (151)
                      .+.|.++|++||.|++..-.       +.....+.|+|.+..+|.+|++ .||+.++|.. |-|..+++
T Consensus        28 ~edi~~e~~k~G~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr~f~gR~-v~v~f~~~   95 (104)
T d1o0pa_          28 VEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRV-VVTKYCDP   95 (104)
T ss_dssp             HHHHHHHHTTTSCEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSCCSSSSC-CEEEEECH
T ss_pred             HHHHHHHhcccCceEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCCEECCeE-EEEEEcCH
Confidence            35689999999999997531       1223589999999999999997 6999999977 88887775

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.79  E-value=4.8e-05  Score=49.72  Aligned_cols=65  Identities=22%  Similarity=0.246  Sum_probs=51.4

Q ss_pred             cCCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC---CCCC--CeEEEEcCCHHHHHHHHH-hCCceecC
Q 031896            4 ISSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG---PRDA--NWMHILYQNRSDAQKALS-KNGMQING   68 (151)
Q Consensus         4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~---p~~~--NWi~i~y~~~~~A~rAL~-~nG~ii~g   68 (151)
                      +..+-|.|-|+|++ ..+.+.+.|++||.|.+....   .++.  .+-.|+|.++.+|++|++ .||..+.|
T Consensus         4 ~~~t~lfV~nlp~~~te~~l~~~F~~~G~i~~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g   75 (85)
T d1b7fa2           4 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG   75 (85)
T ss_dssp             TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEeeeeeecccccccCceeEEEEECCHHHHHHHHHHHCCCEeCC
Confidence            34566999999998 555788899999999986521   1232  378899999999999997 49998876

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=2.7e-05  Score=52.26  Aligned_cols=73  Identities=15%  Similarity=0.109  Sum_probs=57.5

Q ss_pred             CcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC-----CCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECC
Q 031896            6 SFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG-----PRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLD   78 (151)
Q Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~-----p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d   78 (151)
                      .+-|.|-|+|++ ..+.|.+.|++||.|......     -....+..|.|.++.+|++||.. ||..|.|.. |-|....
T Consensus        18 s~tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~-l~V~~ak   96 (102)
T d2cpxa1          18 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI-LVIEFGK   96 (102)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB-CEEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhhccceeeEEeecccccccccccceEEeccHHHHHHHHHHhCCCEECCEE-EEEEeCC
Confidence            356889999998 556788889999998875421     12356889999999999999965 999998866 7777765


Q ss_pred             h
Q 031896           79 P   79 (151)
Q Consensus        79 ~   79 (151)
                      +
T Consensus        97 ~   97 (102)
T d2cpxa1          97 N   97 (102)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=4.6e-05  Score=51.78  Aligned_cols=59  Identities=15%  Similarity=0.170  Sum_probs=48.8

Q ss_pred             HHHHHHHhhcCcEEeeccC-CCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECCh
Q 031896           20 NLVLREFEKCGVILKHVPG-PRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDP   79 (151)
Q Consensus        20 ~~Vl~~F~~~G~I~~~~~~-p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~   79 (151)
                      +.|.++|++||.|++.... +.....+.|+|.+..+|++|+.. ||..++|.. |-|..+++
T Consensus        34 edv~~~~~~~G~V~~v~~~~~~~~G~~fV~f~~~e~A~~A~~~lng~~~~gr~-i~v~~~~g   94 (99)
T d2dita1          34 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQ-ITAQAWDG   94 (99)
T ss_dssp             HHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEE-CEEEECCS
T ss_pred             HHHHHHhcCcccEEEEeccCCCCccEEEEEECCHHHHHHHHHHhCCcEECCEE-EEEEEeCC
Confidence            4688999999999987531 23346899999999999999965 999999977 88888765

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=6e-05  Score=49.16  Aligned_cols=70  Identities=19%  Similarity=0.185  Sum_probs=53.8

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeec---cCCCC--CCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEE
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHV---PGPRD--ANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVK   75 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~---~~p~~--~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVk   75 (151)
                      +.+-|.|-+.|.+ ..+.|.++|++||.|.+..   ..+++  .....|.|.++.+|++||++ ||..|+|.- |-|+
T Consensus         8 ~~~~l~v~nLp~~~~~~di~~~F~~~~~~~~~~~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~-i~v~   84 (86)
T d2cqpa1           8 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK-VKLV   84 (86)
T ss_dssp             SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE-CEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcccceeEEEEEeCCCCCcceEEEEEEcCcHHHHHHHHHcCCCEECCEE-EEEE
Confidence            3455889999998 5668899999999986532   11222  24789999999999999985 999998865 6654

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.00012  Score=47.95  Aligned_cols=65  Identities=17%  Similarity=0.150  Sum_probs=50.9

Q ss_pred             CCcEEEEecCCCC-CHHHHHHHHhhcCcEEeeccC-CCCCCeEEEEcCCHHHHHHHHH-hCCceec-Ce
Q 031896            5 SSFLIVPFRFPPA-DTNLVLREFEKCGVILKHVPG-PRDANWMHILYQNRSDAQKALS-KNGMQIN-GV   69 (151)
Q Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I~~~~~~-p~~~NWi~i~y~~~~~A~rAL~-~nG~ii~-g~   69 (151)
                      ..+-+.|-+.|++ ..+.+.+.|++||.|++.... +.+...-.|+|++..+|.+|+. .||..|. |.
T Consensus         9 Ps~tL~V~NLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g~   77 (88)
T d2adca2           9 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENH   77 (88)
T ss_dssp             SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHhhccCCEEEEEEeeecccceeEEEECCHHHHHHHHHhccCCEecCCC
Confidence            3456889999998 455778889999999876432 2356789999999999999996 5998774 54

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=5.3e-05  Score=51.71  Aligned_cols=58  Identities=17%  Similarity=0.323  Sum_probs=46.9

Q ss_pred             EEEEecCCCCC-HHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCcee
Q 031896            8 LIVPFRFPPAD-TNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQI   66 (151)
Q Consensus         8 wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii   66 (151)
                      +|.+-|.|+.. -+.+.+.|++||.|.+.... .+.+.-.|+|.+..+|++|++. ||..|
T Consensus        22 ~V~ng~L~~~vte~~L~~~F~~~G~i~~i~~~-~~k~~aFV~f~~~e~A~~A~~~lng~~i   81 (101)
T d2cq2a1          22 VVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEV   81 (101)
T ss_dssp             EEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred             EEECCCCCCCCCHHHHHHHHHhhCcccEEeec-cCccEEEEEECCHHHHHHHHHHhCCCCC
Confidence            34446788874 45777889999999988763 4677999999999999999965 99877

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.0002  Score=46.92  Aligned_cols=71  Identities=10%  Similarity=-0.019  Sum_probs=56.1

Q ss_pred             CCcEEEEecCCCCCH-HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh---CCceecCeEEEEEEEC
Q 031896            5 SSFLIVPFRFPPADT-NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK---NGMQINGVLIVGVKPL   77 (151)
Q Consensus         5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~---nG~ii~g~~mIGVkp~   77 (151)
                      ..+-|.|=+.|+... +.|.+.|++||.|.++... ...+...|.|.+..+|++|++.   |+..+.|.- |=|...
T Consensus         7 Ps~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~-~~~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~-l~v~~s   81 (88)
T d2cq1a1           7 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML-KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQP-IYIQYS   81 (88)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEE-CEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhccccccccccc-ccceEEEEEeCCHHHHHHHHHHHccCCCccCCCE-EEEEEC
Confidence            456678889999854 4688889999999998763 3568999999999999999864   788888864 555544

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=5.3e-05  Score=52.03  Aligned_cols=58  Identities=10%  Similarity=-0.036  Sum_probs=48.6

Q ss_pred             HHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCHHHHHHHHHh-CCceecCeEEEEEEECCh
Q 031896           20 NLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSK-NGMQINGVLIVGVKPLDP   79 (151)
Q Consensus        20 ~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~mIGVkp~d~   79 (151)
                      ..+...|++||+|++.... ...+...|.|.++.+|++|+.. ||..|.|.. |-|....+
T Consensus        25 ~~l~~lF~~~G~i~~~~~~-k~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~-l~v~~a~~   83 (104)
T d1weya_          25 AKFESLFRTYDKDTTFQYF-KSFKRVRINFSNPLSAADARLRLHKTEFLGKE-MKLYFAQT   83 (104)
T ss_dssp             HHHHHHHHTTCSSCEEEEE-TTTTEEEEECSSTTHHHHHHHTSTTSEETTEE-CEEECCCC
T ss_pred             HHHHHHhcccccceEEEEe-cCCCEEEEEECCHHHHHHHHHHhcccccCCCE-eEEeeccc
Confidence            4577889999999998764 3578899999999999999996 999999866 66766643

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00066  Score=44.95  Aligned_cols=72  Identities=18%  Similarity=0.242  Sum_probs=52.7

Q ss_pred             EEEEecCCCC-CHHHHHHHHhhcCc-EEeeccCC------CCCCeEEEEcCCHHHHHHHHHh---CCceecCeEEEEEEE
Q 031896            8 LIVPFRFPPA-DTNLVLREFEKCGV-ILKHVPGP------RDANWMHILYQNRSDAQKALSK---NGMQINGVLIVGVKP   76 (151)
Q Consensus         8 wVtVFGfp~~-~~~~Vl~~F~~~G~-I~~~~~~p------~~~NWi~i~y~~~~~A~rAL~~---nG~ii~g~~mIGVkp   76 (151)
                      -|.|=|.|.. ....|.+.|+++|+ |.+.....      ....+-.|+|.++.+|.+|++.   ++..+.|.- |-|.+
T Consensus         3 rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~-i~V~~   81 (96)
T d2disa1           3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ-IAVDW   81 (96)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC-CEEEE
T ss_pred             EEEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEE-EEEEE
Confidence            4677799998 55578888999996 65554211      1235999999999999999975   344556754 88888


Q ss_pred             CChH
Q 031896           77 LDPM   80 (151)
Q Consensus        77 ~d~~   80 (151)
                      .+|.
T Consensus        82 A~p~   85 (96)
T d2disa1          82 AEPE   85 (96)
T ss_dssp             SCSS
T ss_pred             cCCC
Confidence            8763

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00027  Score=48.30  Aligned_cols=48  Identities=21%  Similarity=0.151  Sum_probs=38.2

Q ss_pred             HHHHhhcCcEEeeccCC----CCCCeEEEEcCCHHHHHHHHHh-CCceecCeE
Q 031896           23 LREFEKCGVILKHVPGP----RDANWMHILYQNRSDAQKALSK-NGMQINGVL   70 (151)
Q Consensus        23 l~~F~~~G~I~~~~~~p----~~~NWi~i~y~~~~~A~rAL~~-nG~ii~g~~   70 (151)
                      .+.|++||.|.+.....    .......|+|.+..+|++|++. ||+.++|..
T Consensus        45 ~e~f~k~G~I~~v~I~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~   97 (104)
T d1jmta_          45 TEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP   97 (104)
T ss_dssp             HHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred             HHHhccCCCEEEEEeecCCCCCEeeEEEEEEechhHHHHHHHHHCCCEECCEE
Confidence            34469999999986411    1236789999999999999975 999999976

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00023  Score=48.33  Aligned_cols=71  Identities=18%  Similarity=0.146  Sum_probs=50.9

Q ss_pred             EEEEecCCCCCHH-HHHHHHhhcCcEEeeccCCC-CCCeEEEEcCCHHHHHHHHH-hCCceec-CeEEEEEEECC
Q 031896            8 LIVPFRFPPADTN-LVLREFEKCGVILKHVPGPR-DANWMHILYQNRSDAQKALS-KNGMQIN-GVLIVGVKPLD   78 (151)
Q Consensus         8 wVtVFGfp~~~~~-~Vl~~F~~~G~I~~~~~~p~-~~NWi~i~y~~~~~A~rAL~-~nG~ii~-g~~mIGVkp~d   78 (151)
                      -|.|-..|...+. .+.+.|++||+|++...... ....--|.|.++.+|++|+. .||..|. +...|-|....
T Consensus         9 ~v~V~NL~~~vte~~L~~~F~~~G~i~~~~i~~~~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~~s~   83 (108)
T d2adba1           9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK   83 (108)
T ss_dssp             EEESCSCCSTTHHHHHHHHHTTTSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEEECS
T ss_pred             EEEEeCcCCCCCHHHHHHHHccCCcEEEEEEEeeCCCCeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEEecC
Confidence            3567788888666 66678999999987653221 23468899999999999986 5898873 33445555543

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.0012  Score=47.16  Aligned_cols=71  Identities=13%  Similarity=0.135  Sum_probs=55.6

Q ss_pred             cEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC---CCC--CCeEEEEcCCHHHHHHHHHhCCceecCeEEEEEEECC
Q 031896            7 FLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG---PRD--ANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD   78 (151)
Q Consensus         7 ~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~---p~~--~NWi~i~y~~~~~A~rAL~~nG~ii~g~~mIGVkp~d   78 (151)
                      +-|.|=|+|++. ...+.+.|++||.|++....   ..+  .++-.|.|.+..+|++|+..++..+.+.. +-+++..
T Consensus         7 r~lfV~nLp~~~te~~L~~~F~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~-~~~~~~~   83 (183)
T d1u1qa_           7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV-VEPKRAV   83 (183)
T ss_dssp             HEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEE-CEEEECC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHcCCEEEEEeeecccCCCccCceecccCCHHHHHHHHHhcCCcccccc-hhhhhhh
Confidence            457889999985 46888999999999876521   122  46999999999999999999999997766 5555543

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=3.1e-05  Score=51.11  Aligned_cols=64  Identities=11%  Similarity=0.135  Sum_probs=50.8

Q ss_pred             cEEEEecCCCCC-HHHHHHHHhhcCcEEeeccC----------CCCCCeEEEEcCCHHHHHHHHHhCCceecCeE
Q 031896            7 FLIVPFRFPPAD-TNLVLREFEKCGVILKHVPG----------PRDANWMHILYQNRSDAQKALSKNGMQINGVL   70 (151)
Q Consensus         7 ~wVtVFGfp~~~-~~~Vl~~F~~~G~I~~~~~~----------p~~~NWi~i~y~~~~~A~rAL~~nG~ii~g~~   70 (151)
                      +-|.|-+.|.+. .+.|.++|++||.|......          .....+-.|+|.++.+|++||..||..+.|..
T Consensus         2 RrlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~l~g~~~~Gr~   76 (90)
T d1u2fa_           2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS   76 (90)
T ss_dssp             CEEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGGGGSSCCSSSSC
T ss_pred             CEEEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHHhhCCcEECCEE
Confidence            357788888884 45788999999988654321          12457999999999999999999999999866

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0029  Score=43.19  Aligned_cols=71  Identities=17%  Similarity=0.072  Sum_probs=50.7

Q ss_pred             EEEEe--cCCCC-CHHHHHHHHhhcCcEEeeccCCCCCCeEEEEcCCH-HHHHHHHH-hCCceec-CeEEEEEEECCh
Q 031896            8 LIVPF--RFPPA-DTNLVLREFEKCGVILKHVPGPRDANWMHILYQNR-SDAQKALS-KNGMQIN-GVLIVGVKPLDP   79 (151)
Q Consensus         8 wVtVF--Gfp~~-~~~~Vl~~F~~~G~I~~~~~~p~~~NWi~i~y~~~-~~A~rAL~-~nG~ii~-g~~mIGVkp~d~   79 (151)
                      .|++|  ++|++ ..+.+.+.|++||+|..+.. ..+...-+|+|.++ .+|..|+. .||..+. ..+.|-+....+
T Consensus        11 ~~~~fvgnL~~~~tee~Lk~~F~~fG~V~~v~i-~~~kg~gfV~F~~~~~~A~~a~~~~~~~~l~~~~~~v~~~~~~~   87 (113)
T d1owxa_          11 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF-VRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG   87 (113)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC-CTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred             CeEEEECCCCCCCCHHHHHHHHHhcCChheEEE-ecCCceEEEEecCcHHHHHHHHHHhcCCceecCceEEEEeeccc
Confidence            45555  59987 66688889999999999886 45778999999996 45665554 4776553 334466666544