Citrus Sinensis ID: 031900

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGINTNVQGHSFNTFICSSSGDNSQDWESSNTSLKLGLPFPS
Secondary Structure (PSIPRED)
cHHHHHHHHHcHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccHcccccccHHHHcccccHHHHHHHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccccccccccccEEEccccccc
Coil and Loop (DISEMBL)
MKQVIDRhnlhsqnlhkfdqpslqlqleSSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHetgintnvqghsfntficsssgdnsqdwessntslklglpfps
Flexible Loop (DISEMBL)
mkqvidrhnlhsqnlhkfdqpslqlqLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSlegglsrvvqtkgerLLNEIDALRRKEAQLTEENLRLKQHETGINTNVQGHSFNTFICSSSGDNSQDwessntslklglpfps
Low Complexity Region (SEG)
MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGeelqelnmeelmrleKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGINTNVQGHSFNTFICSSSGDNSQDWESSNTSLKLGLPFPS
Disordered region (IsUnstruct)
***************************************************************************************************************INTNVQGHSFNTFIC*************************
Disordered Region (DISOPRED)
MKQVIDRHN*********************TYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNE**A********TEENLR****************************************LGLPFP*
Disordered Region (DISEMBL)
MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGINTNVQGHSFNTFICS***************LKLGLPFPS
Disordered Region (DISPRO)
*KQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGI*************************SSNTSLKLGLPFPS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKxxxxxxxxxxxxxxxxxxxxxxxxxxxxETGINTNVQGHSFNTFICSSSGDNSQDWESSNTSLKLGLPFPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
Q9FVC1	240	MADS-box protein SVP OS=A	yes	no	0.986	0.620	0.457	2e-31
Q9FUY6	265	MADS-box protein JOINTLES	N/A	no	0.973	0.554	0.446	1e-28
Q9XJ66	228	MADS-box transcription fa	yes	no	0.980	0.649	0.425	4e-25
Q5K4R0	246	MADS-box transcription fa	no	no	0.973	0.597	0.445	3e-24
O82794	220	MADS-box protein AGL24 OS	no	no	0.966	0.663	0.411	1e-22
Q69TG5	245	MADS-box transcription fa	no	no	0.980	0.604	0.375	2e-20
P29386	252	Agamous-like MADS-box pro	no	no	0.509	0.305	0.378	2e-06
Q7XUN2	249	MADS-box transcription fa	no	no	0.417	0.253	0.476	8e-06
Q6EP49	240	MADS-box transcription fa	no	no	0.695	0.437	0.333	2e-05
A2RVQ5	240	Agamous-like MADS-box pro	no	no	0.695	0.437	0.342	2e-05

>sp|Q9FVC1|SVP_ARATH MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/177 (45%), Positives = 119/177 (67%), Gaps = 28/177 (15%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           MK+V++RHNL S+NL K DQPSL+LQL E+S +A +SKE+AD++  LRQM+GEELQ L++
Sbjct: 62  MKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDI 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHET--------- 110
           EEL +LEK+LE GL+RV++TK +++++EI  L++K  QL +EN RL+Q  T         
Sbjct: 122 EELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQGTQLTEENERL 181

Query: 111 --GINTNVQGH----SFNTFI---------CSSSGDNSQ---DWESSNTSLKLGLPF 149
              I  NV  H    S N  +          +++G+++    D ESS+TSL+LGLP+
Sbjct: 182 GMQICNNVHAHGGAESENAAVYEEGQSSESITNAGNSTGAPVDSESSDTSLRLGLPY 238

Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FUY6|JOIN_SOLLC MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/177 (44%), Positives = 112/177 (63%), Gaps = 30/177 (16%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           MKQ+++R +LHS+NL K DQPSL+LQL E+S Y+ LSKE+++++  LRQM+GEELQ LN+
Sbjct: 62  MKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNI 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQH----------- 108
           EEL +LE+SLE GLSRV++ KG++++ EI+ L++K   L EEN +L+Q            
Sbjct: 122 EELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQVMEISNNNNNN 181

Query: 109 -----ETGINTNVQGHSFN-------------TFICSSSGDNSQDWESSNTSLKLGL 147
                E G+      + FN             T  C+S     QD +SS+TSLKLGL
Sbjct: 182 NNGYREAGVVIFEPENGFNNNNNEDGQSSESVTNPCNSIDPPPQDDDSSDTSLKLGL 238

Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Solanum lycopersicum (taxid: 4081)

>sp|Q9XJ66|MAD22_ORYSJ MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1

 Score =  113 bits (283), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 104/162 (64%), Gaps = 14/162 (8%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           M ++ID++N HS NL K +QPSL L LE S YA L++++A+ +  LRQM+GEEL+ L+++
Sbjct: 62  MNEIIDKYNTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSID 121

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGI-------- 112
           EL +LEK+LE GL RV+ TK ++ + +I  L+RK +QL EEN++L+   + I        
Sbjct: 122 ELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVSQISPAEKQVV 181

Query: 113 ---NTNVQGHSFNTFICS--SSGDNSQDW-ESSNTSLKLGLP 148
              N   +G S  + + +  S    SQD  + S+ SLKLGLP
Sbjct: 182 DTENFVTEGQSSESVMTALHSGSSQSQDNDDGSDVSLKLGLP 223

Probable transcription factor. May be required for spikelet (rice flower) development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5K4R0|MAD47_ORYSJ MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2

 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 102/164 (62%), Gaps = 17/164 (10%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLE-SSTYAILSKEMADRTRELRQMKGEELQELNM 59
           M+Q+IDR+N HS+ L + +   L LQ E SST A L +E+A+ +  LRQM+GEEL  LN+
Sbjct: 81  MEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNV 140

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQH----------- 108
           E+L  LEKSLE GL  V++TK +++L+EID L RK  QL EENLRLK+            
Sbjct: 141 EQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQLQVSRMSRMEE 200

Query: 109 -ETGINTNV---QGHSFNTFICSSSGDNSQDWE-SSNTSLKLGL 147
            + G ++ +   +G S  +   +S      D + SS+TSLKLGL
Sbjct: 201 MQPGPDSEIVYEEGQSSESVTNASYPRPPPDNDYSSDTSLKLGL 244

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82794|AGL24_ARATH MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1

 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 103/158 (65%), Gaps = 12/158 (7%)

Query: 1   MKQVIDRHNLHSQNLHKF-DQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           M+ ++ R++LH+ N++K  D PS  L+LE+   + LSKE+ D+T++LR+++GE+L  LN+
Sbjct: 62  MRDILGRYSLHASNINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQLRKLRGEDLDGLNL 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQ--------HETG 111
           EEL RLEK LE GLSRV + KGE ++++I +L ++ ++L +EN RL+           T 
Sbjct: 122 EELQRLEKLLESGLSRVSEKKGECVMSQIFSLEKRGSELVDENKRLRDKLETLERAKLTT 181

Query: 112 INTNVQGHSFNTFICS-SSGDNSQDWESSNTSLKLGLP 148
           +   ++  S  T + S  SG   +D   S+TSLKLGLP
Sbjct: 182 LKEALETESVTTNVSSYDSGTPLED--DSDTSLKLGLP 217

Transcription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q69TG5|MAD55_ORYSJ MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 36/184 (19%)

Query: 1   MKQVIDRHNLHSQNLHKFD-QPSLQL----------------------QLESSTYAILSK 37
           M ++ID++  HS+NL K D QPS+ L                      QLE S  + L++
Sbjct: 62  MNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNE 121

Query: 38  EMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQ 97
           ++A+ + +LRQM+GEEL+ L++EEL ++EK+LE GL RV+ TK ++ + EI  L+RK  Q
Sbjct: 122 QLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQ 181

Query: 98  LTEENLRLKQHETGINT---------NV---QGHSFNTFICSSSGDNSQDW-ESSNTSLK 144
           L EEN+RL+     + T         NV    G S  + + + +  +SQD  + S+ SLK
Sbjct: 182 LAEENMRLRDQMPQVPTAGLAVPDTENVLTEDGQSSESVMTALNSGSSQDNDDGSDISLK 241

Query: 145 LGLP 148
           LGLP
Sbjct: 242 LGLP 245

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P29386|AGL6_ARATH Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 5/82 (6%)

Query: 43  TRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEEN 102
            R  R + GE+L E+ ++EL  LE+ LE  L+   Q K + ++ E++ LR+KE QL + N
Sbjct: 104 VRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDIN 163

Query: 103 LRLKQHETGINTNVQGHSFNTF 124
            +LK     I    +GH+F TF
Sbjct: 164 KQLK-----IKFETEGHAFKTF 180

Probable transcription factor. Forms an heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XUN2|MAD17_ORYSJ MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 42/63 (66%)

Query: 44  RELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENL 103
           R  R M GE+L  L+++EL +LEK LE  LS+  Q K + ++ ++D LRRKE QL E N 
Sbjct: 107 RSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNK 166

Query: 104 RLK 106
           +LK
Sbjct: 167 QLK 169

Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6EP49|MAD27_ORYSJ MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 53/105 (50%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           MK VIDR+            P+ +L+      A L +++ +     RQ+ GE+L  LN++
Sbjct: 62  MKSVIDRYGKSKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVK 121

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRL 105
           EL  LE  LE  L  V   K   L++EI  L RK + + +EN+ L
Sbjct: 122 ELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMEL 166

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2RVQ5|AGL16_ARATH Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 54/105 (51%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           MK VI+R++         + P+ ++Q      AIL +++ +     RQM GEEL  L++E
Sbjct: 62  MKSVIERYSDAKGETSSENDPASEIQFWQKEAAILKRQLHNLQENHRQMMGEELSGLSVE 121

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRL 105
            L  LE  LE  L  V   K + L+ EI  L R+   + +ENL L
Sbjct: 122 ALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVHQENLDL 166

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
326415786	193	AGAMOUS-like E 24-like protein 1 [Aquile	0.980	0.766	0.548	4e-36
449451385	228	PREDICTED: MADS-box protein SVP-like [Cu	0.986	0.653	0.539	1e-35
375155240	215	SVP4 [Actinidia chinensis]	0.993	0.697	0.562	6e-35
224094973	227	predicted protein [Populus trichocarpa]	0.980	0.651	0.527	6e-34
375155232	215	SVP4 [Actinidia deliciosa]	0.993	0.697	0.549	1e-33
359806214	227	MADS-box protein SVP-like [Glycine max]	0.973	0.647	0.493	4e-33
225467973	227	PREDICTED: MADS-box protein SVP [Vitis v	0.986	0.656	0.512	4e-33
255563302	184	MADS-box transcription factor, putative	0.947	0.777	0.541	7e-33
113207065	229	incomposita homologue [Misopates orontiu	0.980	0.646	0.502	9e-33
255545954	161	mads box protein, putative [Ricinus comm	0.966	0.906	0.534	1e-32

>gi|326415786|gb|ADZ72840.1| AGAMOUS-like E 24-like protein 1 [Aquilegia formosa]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 90/164 (54%), Positives = 119/164 (72%), Gaps = 16/164 (9%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           MK++++RHNLHS+NLHK DQPSL+LQLE+  YA LSKE+A+R+R+LR M+GEELQ LN+E
Sbjct: 31  MKEILERHNLHSKNLHKLDQPSLELQLENGNYARLSKEVAERSRQLRNMRGEELQGLNIE 90

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLK---------QHETG 111
           EL +LEKSLE GLSRV++TK + ++NEI  L+ K A+L EEN RLK         Q    
Sbjct: 91  ELQQLEKSLETGLSRVLETKSDWIMNEISTLQAKGAKLMEENERLKQKMVEISKVQKNMA 150

Query: 112 INTNV----QGHSFN--TFICSSSGDNSQDWESSNTSLKLGLPF 149
           I+++V    +GHS    T ICSS G   QD++SS+TSL+L L  
Sbjct: 151 IDSDVVVHEEGHSSESVTNICSSGGP-PQDYDSSDTSLELRLKM 193

Source: Aquilegia formosa

Species: Aquilegia formosa

Genus: Aquilegia

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451385|ref|XP_004143442.1| PREDICTED: MADS-box protein SVP-like [Cucumis sativus]

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/165 (53%), Positives = 117/165 (70%), Gaps = 16/165 (9%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           MK +I+RHNLHS+NL K +QPSL+LQL E+S Y  L+KE+A++T +LRQM+GEELQ LN+
Sbjct: 62  MKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNI 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHE--------TG 111
           EEL +LEKSLE GLSRV++ KGER++ EI  L+RK A+L +EN RLKQ           G
Sbjct: 122 EELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLG 181

Query: 112 INTNV----QGHSFNTF--IC-SSSGDNSQDWESSNTSLKLGLPF 149
           +   +     G S N+   +C S+S    QD ESS+TSLKLGLP+
Sbjct: 182 VEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLGLPY 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|375155240|gb|AFA37970.1| SVP4 [Actinidia chinensis]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 86/153 (56%), Positives = 110/153 (71%), Gaps = 3/153 (1%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           M QVI+RHNL   NL + +QPSL+LQLE+STYA+L  E+ +RTRELRQ++GEEL  L +E
Sbjct: 62  MNQVIERHNLQGDNLVQQNQPSLELQLENSTYAMLCNEVEERTRELRQLRGEELHGLGVE 121

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGINTNV--QG 118
           EL  LEKSLEGGL R+++TK ER   EI AL+RKE +L EENL L+Q    +N +   QG
Sbjct: 122 ELKNLEKSLEGGLGRILKTKDERFEKEITALKRKETRLREENLWLQQRLQIVNASTPEQG 181

Query: 119 HSFNTFICS-SSGDNSQDWESSNTSLKLGLPFP 150
            S  +   + SS    QD++SS+TSLKL LPFP
Sbjct: 182 QSSESITNNGSSTAPPQDYDSSDTSLKLSLPFP 214

Source: Actinidia chinensis

Species: Actinidia chinensis

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094973|ref|XP_002310310.1| predicted protein [Populus trichocarpa] gi|222853213|gb|EEE90760.1| predicted protein [Populus trichocarpa]

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 121/165 (73%), Gaps = 17/165 (10%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           MK++++RHNLHS+NL K +QPSL+LQL E ST + LSKE+A+++ +LRQM+GE+L+ L++
Sbjct: 62  MKEILERHNLHSKNLEKLEQPSLELQLVEDSTCSRLSKEVAEKSHQLRQMRGEDLRGLDI 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQ----------HE 109
           +EL++LEKSLE GLS V++ KGE+++NEI  L+RK  QL EEN RLKQ          H 
Sbjct: 122 DELLQLEKSLEAGLSCVIEKKGEKIMNEITDLQRKGMQLMEENERLKQQVVEISNGRKHV 181

Query: 110 TGINTNV---QGHSFN--TFICSSSGDNSQDWESSNTSLKLGLPF 149
           T  + NV   +G S    T +C+S+G    D+ESS+TSLKLGLPF
Sbjct: 182 TADSENVGYEEGQSSESVTNVCNSNGP-LHDYESSDTSLKLGLPF 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|375155232|gb|AFA37966.1| SVP4 [Actinidia deliciosa]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/153 (54%), Positives = 109/153 (71%), Gaps = 3/153 (1%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           M QVI+RHNL   NL + +QPSL+LQLE+STYA+L  E+ ++TRELRQ++GEEL  L +E
Sbjct: 62  MNQVIERHNLQGNNLVQLNQPSLELQLENSTYAMLCNEVEEKTRELRQLRGEELHGLGVE 121

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGINTNV--QG 118
           EL +LEKSLE GL RV++TK E+   EI AL+RKE +L EENL L+Q     N +   QG
Sbjct: 122 ELKKLEKSLEEGLGRVLKTKDEKFEKEITALKRKETRLREENLWLQQRLQIANASTPEQG 181

Query: 119 HSFNTFICS-SSGDNSQDWESSNTSLKLGLPFP 150
            S  +   + SS    QD++SS+TSLKL LPFP
Sbjct: 182 QSSESITNNGSSTAPPQDYDSSDTSLKLSLPFP 214

Source: Actinidia deliciosa

Species: Actinidia deliciosa

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806214|ref|NP_001240951.1| MADS-box protein SVP-like [Glycine max] gi|166014267|gb|ABY78023.1| short vegetative phase-like protein [Glycine max]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 119/166 (71%), Gaps = 19/166 (11%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           MK++++RH+LHS+NL + +QPSL+LQL E+S  + LSKE+A+++ +LRQ++GE+LQ LN+
Sbjct: 62  MKEILERHHLHSKNLARMEQPSLELQLVENSNCSRLSKEVAEKSHQLRQLRGEDLQGLNI 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGINTNVQGH 119
           EEL +LE+SLE GL RV++ KGE++++EI  L+RK   L EEN RLK+H  GI  N Q H
Sbjct: 122 EELQQLERSLETGLGRVIEKKGEKIMSEITDLQRKGMLLMEENERLKRHVAGI-INGQRH 180

Query: 120 SFN----------------TFICSSSGDNSQDWESSNTSLKLGLPF 149
                              T++C+S+G   QD+ESS+TSLKLGLP+
Sbjct: 181 GGAESENFVMDEGQSSESVTYVCNSTGP-PQDFESSDTSLKLGLPY 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225467973|ref|XP_002269295.1| PREDICTED: MADS-box protein SVP [Vitis vinifera] gi|297744859|emb|CBI38273.3| unnamed protein product [Vitis vinifera]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/164 (51%), Positives = 115/164 (70%), Gaps = 15/164 (9%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           MK+++++H+L S+NL K +QPSL+LQL E++ ++ LSKE+AD++ +LRQM+GEELQ LN+
Sbjct: 62  MKEILEKHSLQSKNLEKLEQPSLELQLVENNNHSRLSKEVADKSHKLRQMRGEELQGLNI 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGINT---NV 116
           E+L +LEKSLE GLSRV+Q KGER++ EI  L+ K  QL EEN RL+Q    I+     V
Sbjct: 122 EDLQQLEKSLEAGLSRVIQKKGERIMKEITDLQSKGVQLMEENERLRQQVVEISNRRRQV 181

Query: 117 QGHSFNTF-----------ICSSSGDNSQDWESSNTSLKLGLPF 149
            G S N F             S+S    QD+ESS+TSLKLGLP+
Sbjct: 182 AGDSENMFHEEGQSSESVTNVSNSNGPPQDYESSDTSLKLGLPY 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563302|ref|XP_002522654.1| MADS-box transcription factor, putative [Ricinus communis] gi|223538130|gb|EEF39741.1| MADS-box transcription factor, putative [Ricinus communis]

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 85/157 (54%), Positives = 113/157 (71%), Gaps = 14/157 (8%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           + QVI+RHNLH +NL + DQPSL+LQLE+ T   LSKE+A++T+ELRQM+GEELQ L+ME
Sbjct: 22  LNQVIERHNLHPRNLGRLDQPSLELQLENCT--ALSKEVAEKTQELRQMRGEELQGLSME 79

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGINTNV---- 116
           EL +LEKSLEGGL RV++TK + + NEI+ L+RK A+L EEN RLKQ    +N  V    
Sbjct: 80  ELQQLEKSLEGGLKRVMETKDDAITNEINDLKRKGAELMEENERLKQQM--VNAPVERLQ 137

Query: 117 ---QGHSFNTFICSSS---GDNSQDWESSNTSLKLGL 147
              QG S ++ + ++S    D  QD+E S T L+LGL
Sbjct: 138 LLEQGQSSDSMMTNTSSGTADPPQDYEGSYTFLRLGL 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113207065|emb|CAL36572.1| incomposita homologue [Misopates orontium]

 Score =  144 bits (364), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 84/167 (50%), Positives = 116/167 (69%), Gaps = 19/167 (11%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           MK++++RHNLHS+NL K +QPSL+LQL E S  A LS+E+A+R+++LR+M+GEELQ LN+
Sbjct: 62  MKEILERHNLHSKNLGKMEQPSLELQLVEDSNCARLSREVAERSQQLRRMRGEELQGLNI 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGINTNVQ-- 117
           EEL RLE+SLE GLSRV+  KGE+++NEI+ L+ K  QL +EN RLKQ    I+   Q  
Sbjct: 122 EELQRLERSLEVGLSRVLDKKGEKIMNEINQLQEKGQQLMQENQRLKQQVVDISNCQQIT 181

Query: 118 -------------GHSFN--TFICSSSGDNSQDWESSNTSLKLGLPF 149
                        G S    T+ C+S+G   QD++ S+T LKLGLP+
Sbjct: 182 ATPDSEIIHLYEEGQSSESVTYTCNSTG-LPQDYDCSDTYLKLGLPY 227

Source: Misopates orontium

Species: Misopates orontium

Genus: Misopates

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545954|ref|XP_002514037.1| mads box protein, putative [Ricinus communis] gi|223547123|gb|EEF48620.1| mads box protein, putative [Ricinus communis]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/161 (53%), Positives = 109/161 (67%), Gaps = 15/161 (9%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           MK+ I R+NLHS NL K DQPSL+LQLE+S    LSKE+AD+T +LRQM+GE+LQ L++E
Sbjct: 1   MKETITRYNLHSNNLDKLDQPSLELQLENSNNIRLSKEVADKTHQLRQMRGEDLQGLSIE 60

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQH------------ 108
           EL +LEK LE GL+RV+QTKGER++NEI  L +K AQL EEN +LKQ             
Sbjct: 61  ELQQLEKMLESGLTRVLQTKGERIMNEISTLEKKGAQLLEENKQLKQKMIALCKGKRPVF 120

Query: 109 -ETGINTNVQGHSFN--TFICSSSGDNSQDWESSNTSLKLG 146
            E+ I    +G S    T +CS S     D +SS+TSLKLG
Sbjct: 121 LESDIVVQEEGLSSESVTNVCSCSSGPPLDDDSSDTSLKLG 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
TAIR|locus:2041233	240	SVP "AT2G22540" [Arabidopsis t	0.986	0.620	0.395	1.8e-23
UNIPROTKB|Q9XJ66	228	MADS22 "MADS-box transcription	0.980	0.649	0.376	8e-21
UNIPROTKB|Q5K4R0	246	MADS47 "MADS-box transcription	0.973	0.597	0.390	1.4e-18
TAIR|locus:2121924	220	AGL24 "AT4G24540" [Arabidopsis	0.966	0.663	0.354	5.8e-18
TAIR|locus:2127213	219	AGL19 "AGAMOUS-like 19" [Arabi	0.860	0.593	0.288	0.00041

TAIR|locus:2041233 SVP "AT2G22540" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 70/177 (39%), Positives = 106/177 (59%)

Query:     1 MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGXXXXXXXX 59
             MK+V++RHNL S+NL K DQPSL+LQL E+S +A +SKE+AD++  LRQM+G        
Sbjct:    62 MKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDI 121

Query:    60 XXXXXXXKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGIN------ 113
                    K+LE GL+RV++TK +++++EI  L++K  QL +EN RL+Q  T +       
Sbjct:   122 EELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQGTQLTEENERL 181

Query:   114 -----TNVQGH----SFNTFI---------CSSSGDNSQ---DWESSNTSLKLGLPF 149
                   NV  H    S N  +          +++G+++    D ESS+TSL+LGLP+
Sbjct:   182 GMQICNNVHAHGGAESENAAVYEEGQSSESITNAGNSTGAPVDSESSDTSLRLGLPY 238

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048438 "floral whorl development" evidence=IGI

GO:0000900 "translation repressor activity, nucleic acid binding" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0010076 "maintenance of floral meristem identity" evidence=IGI

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

UNIPROTKB|Q9XJ66 MADS22 "MADS-box transcription factor 22" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 61/162 (37%), Positives = 91/162 (56%)

Query:     1 MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGXXXXXXXXX 60
             M ++ID++N HS NL K +QPSL L LE S YA L++++A+ +  LRQM+G         
Sbjct:    62 MNEIIDKYNTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSID 121

Query:    61 XXXXXXKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGI-------- 112
                   K+LE GL RV+ TK ++ + +I  L+RK +QL EEN++L+   + I        
Sbjct:   122 ELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVSQISPAEKQVV 181

Query:   113 ---NTNVQGHSFNTFICS--SSGDNSQDWES-SNTSLKLGLP 148
                N   +G S  + + +  S    SQD +  S+ SLKLGLP
Sbjct:   182 DTENFVTEGQSSESVMTALHSGSSQSQDNDDGSDVSLKLGLP 223

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0030154 "cell differentiation" evidence=IMP

UNIPROTKB|Q5K4R0 MADS47 "MADS-box transcription factor 47" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 64/164 (39%), Positives = 91/164 (55%)

Query:     1 MKQVIDRHNLHSQNLHKFDQPSLQLQLE-SSTYAILSKEMADRTRELRQMKGXXXXXXXX 59
             M+Q+IDR+N HS+ L + +   L LQ E SST A L +E+A+ +  LRQM+G        
Sbjct:    81 MEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNV 140

Query:    60 XXXXXXXKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQH----------- 108
                    KSLE GL  V++TK +++L+EID L RK  QL EENLRLK+            
Sbjct:   141 EQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQLQVSRMSRMEE 200

Query:   109 -ETGINTNV---QGHSFNTFICSSSGDNSQDWE-SSNTSLKLGL 147
              + G ++ +   +G S  +   +S      D + SS+TSLKLGL
Sbjct:   201 MQPGPDSEIVYEEGQSSESVTNASYPRPPPDNDYSSDTSLKLGL 244

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

TAIR|locus:2121924 AGL24 "AT4G24540" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 56/158 (35%), Positives = 92/158 (58%)

Query:     1 MKQVIDRHNLHSQNLHKF-DQPSLQLQLESSTYAILSKEMADRTRELRQMKGXXXXXXXX 59
             M+ ++ R++LH+ N++K  D PS  L+LE+   + LSKE+ D+T++LR+++G        
Sbjct:    62 MRDILGRYSLHASNINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQLRKLRGEDLDGLNL 121

Query:    60 XXXXXXXKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQH-ET-------G 111
                    K LE GLSRV + KGE ++++I +L ++ ++L +EN RL+   ET        
Sbjct:   122 EELQRLEKLLESGLSRVSEKKGECVMSQIFSLEKRGSELVDENKRLRDKLETLERAKLTT 181

Query:   112 INTNVQGHSFNTFICS-SSGDNSQDWESSNTSLKLGLP 148
             +   ++  S  T + S  SG   +D   S+TSLKLGLP
Sbjct:   182 LKEALETESVTTNVSSYDSGTPLED--DSDTSLKLGLP 217

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0010220 "positive regulation of vernalization response" evidence=IEP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0000060 "protein import into nucleus, translocation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048438 "floral whorl development" evidence=IGI

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEP

GO:0010076 "maintenance of floral meristem identity" evidence=IGI

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2127213 AGL19 "AGAMOUS-like 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00041, P = 0.00041
 Identities = 39/135 (28%), Positives = 58/135 (42%)

Query:    14 NLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGXXXXXXXXXXXXXXXKSLEGGL 73
             N HK +  S Q + E+S    L+K++       R++ G                 L+  L
Sbjct:    78 NNHKRNDNSQQARDETSG---LTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSL 134

Query:    74 SRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGINTNVQGHSFNTFICSSSGDNS 133
             SR+   K + L  EI+ L+ +E  L +EN  LK+   G+ T     S +T   SSS  N 
Sbjct:   135 SRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGTATIASSQSTL--SSSEVNI 192

Query:   134 QDWESSNTSLKLGLP 148
              D     T L +G P
Sbjct:   193 DDNMEVETGLFIGPP 207


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.127   0.349    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      151       136   0.00091  102 3  11 23  0.48    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  570 (61 KB)
  Total size of DFA:  127 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.20u 0.17s 15.37t   Elapsed:  00:00:01
  Total cpu time:  15.20u 0.17s 15.37t   Elapsed:  00:00:01
  Start:  Fri May 10 06:11:35 2013   End:  Fri May 10 06:11:36 2013

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010048 "vernalization response" evidence=RCA;IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_VII4001 hypothetical protein (227 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	151
pfam01486	100	pfam01486, K-box, K-box region	9e-13

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 60.2 bits (147), Expect = 9e-13
 Identities = 30/64 (46%), Positives = 44/64 (68%)

Query: 44  RELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENL 103
           RE R + GE+L  L+++EL +LE+ LE GL  +   K E LLN+I+ L++KE +L EEN 
Sbjct: 33  REQRHLLGEDLGSLSLKELQQLEQQLENGLKHIRSRKNELLLNQIEELQKKERELQEENR 92

Query: 104 RLKQ 107
            L+Q
Sbjct: 93  NLRQ 96

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.91
KOG0014	195	consensus MADS box transcription factor [Transcrip	97.05
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.7
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	89.95
PRK15422	79	septal ring assembly protein ZapB; Provisional	89.67
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	88.43
PRK13169	110	DNA replication intiation control protein YabA; Re	87.47
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	86.31
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	84.12
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	83.97

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.91  E-value=4.1e-24  Score=149.55  Aligned_cols=90  Identities=37%  Similarity=0.517  Sum_probs=86.3

Q ss_pred             chHHHHhHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900           22 SLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEE  101 (151)
Q Consensus        22 ~~~~q~~~~e~~~l~~e~~~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~ee  101 (151)
                      ....+.+..++++|+.+++.|+..+|||+|+||++||++||+.||++|+.||.+||+||+++|+++|..|++|++.+.++
T Consensus        11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e   90 (100)
T PF01486_consen   11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE   90 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 031900          102 NLRLKQHETG  111 (151)
Q Consensus       102 N~~L~~k~~~  111 (151)
                      |..|+.++++
T Consensus        91 n~~L~~~~~e  100 (100)
T PF01486_consen   91 NNQLRQKIEE  100 (100)
T ss_pred             HHHHHHHhcC
Confidence            9999999864

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=97.05  E-value=0.00022  Score=54.51  Aligned_cols=70  Identities=33%  Similarity=0.370  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHH---HHhhcccccCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 031900           30 STYAILSKEMADRT---RELRQMKGEELQELNM-EELMRLEKSLEGGLSRVVQTKGERLLNEID-ALRRKEAQLT   99 (151)
Q Consensus        30 ~e~~~l~~e~~~L~---~~~R~l~GEdL~~Lsl-~EL~~LE~qLe~aL~~IR~rK~qll~~~i~-~L~~Ke~~L~   99 (151)
                      .....++...+.+.   ..+++++|++|.++++ .+|..++.+++.++..+|..+...+..++. .++.+...+.
T Consensus       114 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (195)
T KOG0014|consen  114 SLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKSLE  188 (195)
T ss_pred             hhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchhcc
Confidence            34455566666655   3489999999999999 999999999999999999999999888776 5555444333

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.70  E-value=0.14  Score=33.75  Aligned_cols=48  Identities=27%  Similarity=0.425  Sum_probs=33.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900           57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHE  109 (151)
Q Consensus        57 Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~  109 (151)
                      +|++-|.+||..+..|+..|..=     ..++..|+.+...|.++|..|....
T Consensus         1 M~~E~l~~LE~ki~~aveti~~L-----q~e~eeLke~n~~L~~e~~~L~~en   48 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIALL-----QMENEELKEKNNELKEENEELKEEN   48 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            47889999999999999999864     4566777776555555555554443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.95  E-value=3.9  Score=26.86  Aligned_cols=47  Identities=21%  Similarity=0.404  Sum_probs=33.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900           57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQH  108 (151)
Q Consensus        57 Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k  108 (151)
                      +|++=|..||..+..|+.-|-     ++.-+|++|+.|...|..+-..++..
T Consensus         1 MSlEv~ekLE~KiqqAvdTI~-----LLQmEieELKEknn~l~~e~q~~q~~   47 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQNAQHQ   47 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence            478889999999999998774     56667788877766555554444333

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=89.67  E-value=3  Score=27.89  Aligned_cols=42  Identities=24%  Similarity=0.428  Sum_probs=31.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900           57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENL  103 (151)
Q Consensus        57 Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~  103 (151)
                      +|++=|.+||..+..|+.-|-     ++.-+|++|+.|-..|.+++.
T Consensus         1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~~   42 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQ   42 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            478889999999999999874     455677777777555555433

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=88.43  E-value=4.6  Score=28.47  Aligned_cols=50  Identities=24%  Similarity=0.336  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900           59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGIN  113 (151)
Q Consensus        59 l~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~  113 (151)
                      +..|.+||++|..-+..|..-|.     ++..|-..-..|.-||..|+..+.+..
T Consensus         7 ~~~l~~le~~l~~l~~~~~~LK~-----~~~~l~EEN~~L~~EN~~Lr~~l~~~~   56 (107)
T PF06156_consen    7 FDRLDQLEQQLGQLLEELEELKK-----QLQELLEENARLRIENEHLRERLEELE   56 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35678899998888888877663     445666666677788888888877653

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=87.47  E-value=5.7  Score=28.23  Aligned_cols=49  Identities=22%  Similarity=0.262  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900           59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGI  112 (151)
Q Consensus        59 l~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~  112 (151)
                      ++-|.+||+++..-+..|..-|.     ++..+-.....|.-||..|+..+.+.
T Consensus         7 fd~l~~le~~l~~l~~el~~LK~-----~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALKK-----QLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45688999999998888887664     44566666777888888888888865

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=86.31  E-value=1.4  Score=27.91  Aligned_cols=30  Identities=33%  Similarity=0.400  Sum_probs=21.3

Q ss_pred             cccccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031900           48 QMKGEELQELNMEELMRLEKSLEGGLSRVV   77 (151)
Q Consensus        48 ~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR   77 (151)
                      +..|+||+.||+.||..==..|+.=+.|++
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~   41 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLE   41 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999864444444444444

The function of this family is unknown.

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=84.12  E-value=2  Score=30.42  Aligned_cols=25  Identities=40%  Similarity=0.373  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q 031900           87 EIDALRRKEAQLTEENLRLKQHETG  111 (151)
Q Consensus        87 ~i~~L~~Ke~~L~eeN~~L~~k~~~  111 (151)
                      .+..|++|.+.|+|||+.|+-|++-
T Consensus        73 e~~rlkkk~~~LeEENNlLklKiev   97 (108)
T cd07429          73 EVLRLKKKNQQLEEENNLLKLKIEV   97 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888999999999998764

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=83.97  E-value=3.2  Score=26.19  Aligned_cols=29  Identities=41%  Similarity=0.455  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900           81 GERLLNEIDALRRKEAQLTEENLRLKQHE  109 (151)
Q Consensus        81 ~qll~~~i~~L~~Ke~~L~eeN~~L~~k~  109 (151)
                      .+.+.++|.+|..+...|+.||..|+...
T Consensus        16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~~   44 (59)
T PF01166_consen   16 VEVLKEQIAELEERNSQLEEENNLLKQNA   44 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            35667788888888888888888887764

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	91.65
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	88.2
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	86.01
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	85.2
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	83.58
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	82.22
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	81.69
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	81.68

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=91.65  E-value=1.8  Score=28.18  Aligned_cols=43  Identities=23%  Similarity=0.421  Sum_probs=31.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900           57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLR  104 (151)
Q Consensus        57 Lsl~EL~~LE~qLe~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~  104 (151)
                      +|++=|.+||..+..|+..|-     ++..+|+.|+.|-..|..+|..
T Consensus         3 MS~ElleqLE~KIq~avdtI~-----lLqmEieELKekN~~L~~e~~e   45 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN   45 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            688899999999999998774     4556677777776664444444

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=88.20  E-value=1.7  Score=26.75  Aligned_cols=39  Identities=18%  Similarity=0.220  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900           71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGIN  113 (151)
Q Consensus        71 ~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~  113 (151)
                      .|-.+.|.||.    +.+..|..++..|..+|..|..++..+.
T Consensus        19 eAArrsR~RK~----~~~~~Le~~v~~L~~eN~~L~~ev~~Lr   57 (63)
T 2dgc_A           19 EAARRSRARKL----QRMKQLEDKVEELLSKNYHLENEVARLK   57 (63)
T ss_dssp             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567777774    4567888888889999999998887654

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=86.01  E-value=3.1  Score=24.86  Aligned_cols=38  Identities=16%  Similarity=0.198  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031900           73 LSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGINT  114 (151)
Q Consensus        73 L~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~~  114 (151)
                      -.+-|.||.    ..++.|..++..|..+|..|..++..+..
T Consensus        13 A~rSR~RKk----~~~~~LE~~v~~L~~eN~~L~~~~~~L~~   50 (55)
T 1dh3_A           13 ARESRRKKK----EYVKSLENRVAVLENQNKTLIEELKALKD   50 (55)
T ss_dssp             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566664    45688899999999999999999877654

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=85.20  E-value=2.8  Score=23.79  Aligned_cols=29  Identities=24%  Similarity=0.261  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900           82 ERLLNEIDALRRKEAQLTEENLRLKQHET  110 (151)
Q Consensus        82 qll~~~i~~L~~Ke~~L~eeN~~L~~k~~  110 (151)
                      +-|...+.+|..++..|+.||..|++.+.
T Consensus        13 k~le~~naeLEervstLq~EN~mLRqvl~   41 (42)
T 2oqq_A           13 KDLENKNSELEERLSTLQNENQMLRHILK   41 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence            34556778999999999999999998763

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=83.58  E-value=4.5  Score=24.67  Aligned_cols=38  Identities=18%  Similarity=0.266  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031900           72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGIN  113 (151)
Q Consensus        72 aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~~  113 (151)
                      |..+-|.||.+.    +..|..++..|..+|..|...+..+.
T Consensus        13 AA~rcR~rKk~~----~~~Le~~v~~L~~~n~~L~~ei~~L~   50 (63)
T 2wt7_A           13 AAAKCRNRRREL----TDTLQAETDQLEDEKSALQTEIANLL   50 (63)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445557777544    67888888888888888888876543

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=82.22  E-value=5.4  Score=24.03  Aligned_cols=37  Identities=24%  Similarity=0.241  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900           72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGI  112 (151)
Q Consensus        72 aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~  112 (151)
                      |..+-|.||.+    .+..|..++..|..+|..|..++..+
T Consensus        12 AA~k~R~rKk~----~~~~Le~~~~~L~~~n~~L~~~i~~L   48 (61)
T 1t2k_D           12 AASRSRQKRKV----WVQSLEKKAEDLSSLNGQLQSEVTLL   48 (61)
T ss_dssp             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566777754    45677777777888888887777554

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=81.69  E-value=5.4  Score=24.37  Aligned_cols=38  Identities=26%  Similarity=0.307  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031900           71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHETGI  112 (151)
Q Consensus        71 ~aL~~IR~rK~qll~~~i~~L~~Ke~~L~eeN~~L~~k~~~~  112 (151)
                      .|..+-|.+|.+    .+..|..++..|..+|..|..++..+
T Consensus        12 ~AA~R~R~KKk~----~~~~le~~~~~L~~~N~~L~~~i~~L   49 (63)
T 1ci6_A           12 TAATRYRQKKRA----EQEALTGECKELEKKNEALKERADSL   49 (63)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356666766643    45666667777777777777666543

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=81.68  E-value=2.6  Score=26.95  Aligned_cols=28  Identities=39%  Similarity=0.396  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031900           82 ERLLNEIDALRRKEAQLTEENLRLKQHE  109 (151)
Q Consensus        82 qll~~~i~~L~~Ke~~L~eeN~~L~~k~  109 (151)
                      +.+.++|.+|..+...|+.||..|+.-.
T Consensus        18 evLKe~I~EL~e~~~qLE~EN~~Lk~~a   45 (78)
T 1dip_A           18 EILKEQIRELVEKNSQLERENTLLKTLA   45 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5677888999999999999998887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00