Citrus Sinensis ID: 031924
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 150 | 2.2.26 [Sep-21-2011] | |||||||
| Q58DT8 | 382 | WD repeat-containing prot | yes | no | 0.926 | 0.363 | 0.414 | 4e-25 | |
| Q9CX97 | 388 | WD repeat-containing prot | yes | no | 0.866 | 0.335 | 0.412 | 1e-22 | |
| A1L112 | 384 | WD repeat-containing prot | yes | no | 0.866 | 0.338 | 0.412 | 1e-22 | |
| B2ZZS9 | 400 | WD repeat-containing prot | N/A | no | 0.84 | 0.315 | 0.434 | 6e-22 | |
| Q9H6Y2 | 383 | WD repeat-containing prot | yes | no | 0.866 | 0.339 | 0.404 | 7e-22 | |
| Q5R9T6 | 383 | WD repeat-containing prot | yes | no | 0.866 | 0.339 | 0.404 | 4e-21 | |
| Q54SA5 | 408 | WD repeat-containing prot | yes | no | 0.833 | 0.306 | 0.370 | 4e-20 | |
| Q6DRF9 | 387 | WD repeat-containing prot | yes | no | 0.866 | 0.335 | 0.389 | 7e-20 | |
| P0CS40 | 374 | WD repeat-containing prot | yes | no | 0.84 | 0.336 | 0.395 | 1e-18 | |
| P0CS41 | 374 | WD repeat-containing prot | N/A | no | 0.84 | 0.336 | 0.395 | 1e-18 |
| >sp|Q58DT8|WDR55_BOVIN WD repeat-containing protein 55 OS=Bos taurus GN=WDR55 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 83/140 (59%), Gaps = 1/140 (0%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
M D LL SGDG L V N+++ + SE +LTSV LMK GRKV CGS GT
Sbjct: 174 MALDPDKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKYGRKVACGSSEGT 233
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+ L++W F SDRF L S+D ++ + E + GS +G+I V ILPNR++ + +
Sbjct: 234 IYLFNWDGFGATSDRFA-LRAESIDCMVPVTESLLCAGSTDGVIRAVNILPNRVVGSVGQ 292
Query: 121 HSEYPIESLGIASVLCFINS 140
H+E P+E+L ++ CF+ S
Sbjct: 293 HAEEPVENLALSHCGCFLAS 312
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Bos taurus (taxid: 9913) |
| >sp|Q9CX97|WDR55_MOUSE WD repeat-containing protein 55 OS=Mus musculus GN=Wdr55 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 81/131 (61%), Gaps = 1/131 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++W F
Sbjct: 184 LLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVALMKYGKKVACGSSEGTIYLFNWNGF 243
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF L S+D ++ + E+ + TGS +G+I V ILPNR++ + +H+ P+E+L
Sbjct: 244 GATSDRFA-LRAESIDCIVPVTENLLCTGSTDGIIRAVNILPNRVVGTVGQHAGEPVEAL 302
Query: 130 GIASVLCFINS 140
++ F+ S
Sbjct: 303 ALSHCGHFLAS 313
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Mus musculus (taxid: 10090) |
| >sp|A1L112|WDR55_RAT WD repeat-containing protein 55 OS=Rattus norvegicus GN=Wdr55 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 80/131 (61%), Gaps = 1/131 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++W F
Sbjct: 183 LLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVALMKYGKKVACGSSEGTIYLFNWNGF 242
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF L S+D ++ + E+ + TGS +G+I V ILPNR++ + +H+ P+E L
Sbjct: 243 GATSDRFA-LRAESIDCMVPVTENLLCTGSTDGIIRAVNILPNRVVGTVGQHAGEPVEEL 301
Query: 130 GIASVLCFINS 140
++ F+ S
Sbjct: 302 ALSHCGHFLAS 312
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Rattus norvegicus (taxid: 10116) |
| >sp|B2ZZS9|WDR55_ORYLA WD repeat-containing protein 55 OS=Oryzias latipes GN=wdr55 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 3 FAADAMK--LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
A D K LL TSGDGT+ V N+++ + SEF +LTSV LMK G+KVVCGS GT
Sbjct: 190 IAVDQAKRILLTTSGDGTMGVFNIKRRRFELLSEFQSGDLTSVALMKRGKKVVCGSSEGT 249
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
V +++W F SDRF + SVD ++ + + + T S +G I + +LPNR+I I +
Sbjct: 250 VYIFNWNGFGATSDRF-AVKAESVDCIVPITDSIMCTASMDGYIRAINLLPNRVIGCIGQ 308
Query: 121 HSEYPIESL 129
H PIE +
Sbjct: 309 HVGEPIEEI 317
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis, including thymus development. Oryzias latipes (taxid: 8090) |
| >sp|Q9H6Y2|WDR55_HUMAN WD repeat-containing protein 55 OS=Homo sapiens GN=WDR55 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL SGDG L + N+++ + SE +LTSV LMK G+KV CGS GT+ L++W F
Sbjct: 183 LLTASGDGCLGIFNIKRRRFELLSEPQSGDLTSVTLMKWGKKVACGSSEGTIYLFNWNGF 242
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P+E L
Sbjct: 243 GATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEPVEEL 301
Query: 130 GIASVLCFINS 140
++ F+ S
Sbjct: 302 ALSHCGRFLAS 312
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Homo sapiens (taxid: 9606) |
| >sp|Q5R9T6|WDR55_PONAB WD repeat-containing protein 55 OS=Pongo abelii GN=WDR55 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 1/131 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++W F
Sbjct: 183 LLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKCGKKVACGSSEGTIYLFNWNGF 242
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P+ L
Sbjct: 243 GATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEPVGEL 301
Query: 130 GIASVLCFINS 140
++ F+ S
Sbjct: 302 ALSHCGRFLAS 312
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Pongo abelii (taxid: 9601) |
| >sp|Q54SA5|WDR55_DICDI WD repeat-containing protein 55 homolog OS=Dictyostelium discoideum GN=wdr55 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 80/127 (62%), Gaps = 2/127 (1%)
Query: 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
D + TSGDG +S+ N + ++ SE S+ EL S + + NG+K+VCGSQ G++L+Y
Sbjct: 156 DDRHIAATSGDGGVSIYNFVRKSMDDISEKSDNELLSCLSLDNGQKLVCGSQDGSILIYD 215
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
++ +F G P SVDAL+K++ + +GS +G+I +G+ P +++ + EHS +P
Sbjct: 216 RNNLENVK-KFAG-HPQSVDALVKVNNNTFFSGSSDGIIRFIGLRPKKLLGVVGEHSTFP 273
Query: 126 IESLGIA 132
IE + I+
Sbjct: 274 IERMAIS 280
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q6DRF9|WDR55_DANRE WD repeat-containing protein 55 OS=Danio rerio GN=wdr55 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL +SGDGTL V N+++ + SE +LTSV +MK GRKVVCGS GT+ +++W F
Sbjct: 180 LLTSSGDGTLGVFNIKRRRFELLSEIQNGDLTSVSIMKRGRKVVCGSGEGTIYIFNWNGF 239
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF + SVD ++ + + + S +G+I + ILPNR++ I +H IE +
Sbjct: 240 GATSDRF-AVQAESVDCIVPITDSILCAASTDGVIRAINILPNRVVGSIGQHVGEAIEEI 298
Query: 130 GIASVLCFINS 140
F+ S
Sbjct: 299 ARCRDTHFLAS 309
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Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Danio rerio (taxid: 7955) |
| >sp|P0CS40|JIP5_CRYNJ WD repeat-containing protein JIP5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=JIP5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 82/134 (61%), Gaps = 8/134 (5%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS 58
T+ D +L+ TSGDG LSV ++R K+T T SE E+EL S+V +K G+K + GS
Sbjct: 169 FTYFDDKRQLVATSGDGHLSVIDIRSNKSTPLTVSEDQEDELLSIVPIKGGQKAIVGS-- 226
Query: 59 GTVLLYSWGY---FKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115
G +L W + D DR G P S+DA++ L D + TGSE+G+I ++ +LP++ +
Sbjct: 227 GLGILSVWNRQMGWADSVDRIPG-HPASIDAIVALTPDIIATGSEDGMIRVIQVLPHKFL 285
Query: 116 QPIAEHSEYPIESL 129
+A H E+P+E +
Sbjct: 286 GVVATHEEFPVERI 299
|
Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
| >sp|P0CS41|JIP5_CRYNB WD repeat-containing protein JIP5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=JIP5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 82/134 (61%), Gaps = 8/134 (5%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS 58
T+ D +L+ TSGDG LSV ++R K+T T SE E+EL S+V +K G+K + GS
Sbjct: 169 FTYFDDKRQLVATSGDGHLSVIDIRSNKSTPLTVSEDQEDELLSIVPIKGGQKAIVGS-- 226
Query: 59 GTVLLYSWGY---FKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115
G +L W + D DR G P S+DA++ L D + TGSE+G+I ++ +LP++ +
Sbjct: 227 GLGILSVWNRQMGWADSVDRIPG-HPASIDAIVALTPDIIATGSEDGMIRVIQVLPHKFL 285
Query: 116 QPIAEHSEYPIESL 129
+A H E+P+E +
Sbjct: 286 GVVATHEEFPVERI 299
|
Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 150 | ||||||
| 224079375 | 348 | predicted protein [Populus trichocarpa] | 0.933 | 0.402 | 0.8 | 7e-62 | |
| 225463585 | 346 | PREDICTED: WD repeat-containing protein | 0.88 | 0.381 | 0.833 | 4e-61 | |
| 225433585 | 346 | PREDICTED: WD repeat-containing protein | 0.88 | 0.381 | 0.833 | 2e-60 | |
| 224065234 | 348 | predicted protein [Populus trichocarpa] | 0.933 | 0.402 | 0.771 | 8e-60 | |
| 356544310 | 340 | PREDICTED: WD repeat-containing protein | 0.933 | 0.411 | 0.778 | 4e-59 | |
| 161016198 | 274 | gland development-related protein 1 [Gos | 0.886 | 0.485 | 0.819 | 9e-59 | |
| 388511287 | 349 | unknown [Lotus japonicus] | 0.933 | 0.401 | 0.771 | 3e-58 | |
| 356534870 | 352 | PREDICTED: WD repeat-containing protein | 0.933 | 0.397 | 0.764 | 5e-58 | |
| 357477601 | 420 | WD-40 repeat protein [Medicago truncatul | 0.933 | 0.333 | 0.75 | 3e-57 | |
| 356577598 | 313 | PREDICTED: WD repeat-containing protein | 0.933 | 0.447 | 0.75 | 1e-56 |
| >gi|224079375|ref|XP_002305841.1| predicted protein [Populus trichocarpa] gi|222848805|gb|EEE86352.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 112/140 (80%), Positives = 127/140 (90%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKLL TSGDGTLSVCNLR N +Q++SEFSEEEL SVV+MKNGRKV+CGSQ+GT
Sbjct: 141 MTFASDSMKLLSTSGDGTLSVCNLRSNKIQSQSEFSEEELLSVVIMKNGRKVICGSQNGT 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRF GLSPNS+DALLKLDEDRVITGSENGLISL+GILPNRIIQP+AE
Sbjct: 201 LLLYSWGFFKDCSDRFTGLSPNSIDALLKLDEDRVITGSENGLISLLGILPNRIIQPLAE 260
Query: 121 HSEYPIESLGIASVLCFINS 140
HSEYPIE L + F+ S
Sbjct: 261 HSEYPIEHLAFSHDRKFLGS 280
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463585|ref|XP_002271081.1| PREDICTED: WD repeat-containing protein 55 [Vitis vinifera] gi|297743547|emb|CBI36414.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 110/132 (83%), Positives = 123/132 (93%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKLLG SGDGTLSVCNLR+N VQ +SEFSE+EL SVV+MKNGRKV+CG+QSG
Sbjct: 142 MTFASDSMKLLGVSGDGTLSVCNLRRNKVQVQSEFSEDELLSVVIMKNGRKVICGTQSGA 201
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRF+ LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE
Sbjct: 202 LLLYSWGHFKDCSDRFIDLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 261
Query: 121 HSEYPIESLGIA 132
HSEYP+E L +
Sbjct: 262 HSEYPVERLAFS 273
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433585|ref|XP_002269842.1| PREDICTED: WD repeat-containing protein 55 [Vitis vinifera] gi|298205166|emb|CBI17225.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/132 (83%), Positives = 122/132 (92%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKLLG SGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKV+CG+QSG
Sbjct: 142 MTFASDSMKLLGVSGDGTLSVCNLRRNKVQVQSEFSEDELLSVVLMKNGRKVICGTQSGA 201
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRF+ LSPNSVDALLKLDED VITGSENGLISLVGILPNRIIQPIAE
Sbjct: 202 LLLYSWGHFKDCSDRFIDLSPNSVDALLKLDEDSVITGSENGLISLVGILPNRIIQPIAE 261
Query: 121 HSEYPIESLGIA 132
HSEYP+E L +
Sbjct: 262 HSEYPVERLAFS 273
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065234|ref|XP_002301730.1| predicted protein [Populus trichocarpa] gi|222843456|gb|EEE81003.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 234 bits (598), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 108/140 (77%), Positives = 125/140 (89%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKLL TSGDGTLSVCNLR N +Q++SEFSEEEL SVV+MKNGRKV+CGSQ+GT
Sbjct: 141 MTFASDSMKLLSTSGDGTLSVCNLRTNKIQSQSEFSEEELLSVVIMKNGRKVICGSQNGT 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRF LSPNS+D LLKLDEDRVITGSENGLISL+GILPNR+IQP+AE
Sbjct: 201 LLLYSWGFFKDCSDRFTALSPNSIDTLLKLDEDRVITGSENGLISLLGILPNRVIQPLAE 260
Query: 121 HSEYPIESLGIASVLCFINS 140
HSEYPIE L + ++ S
Sbjct: 261 HSEYPIECLAFSHDRKYLGS 280
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544310|ref|XP_003540596.1| PREDICTED: WD repeat-containing protein 55-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 232 bits (592), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/140 (77%), Positives = 124/140 (88%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+TFA+DAMKLL TSGDGTLSVCNLR+NTVQ RSEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 141 ITFASDAMKLLATSGDGTLSVCNLRRNTVQARSEFSEDELLSVVLMKNGRKVVCGSQTGI 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRF LS NS+DA+LKLDEDR+ITGSENG+I+LVGILPNR+IQPIAE
Sbjct: 201 ILLYSWGCFKDCSDRFTDLSSNSIDAMLKLDEDRIITGSENGIINLVGILPNRVIQPIAE 260
Query: 121 HSEYPIESLGIASVLCFINS 140
HSEYP+E L + F+ S
Sbjct: 261 HSEYPVECLAFSHDRKFLGS 280
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|161016198|gb|ABX56031.1| gland development-related protein 1 [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 231 bits (588), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 109/133 (81%), Positives = 121/133 (90%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
M F +D+MKLL TSGDGTLSVCNLR VQTRSEFSE+EL+SVV+MKNGRKV+CGSQ GT
Sbjct: 142 MNFVSDSMKLLTTSGDGTLSVCNLRTYKVQTRSEFSEDELSSVVVMKNGRKVICGSQGGT 201
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRFV LSPNSV+A+LKLDEDR+ITGSENGLISLVGILPNRIIQPIAE
Sbjct: 202 LLLYSWGFFKDCSDRFVDLSPNSVEAMLKLDEDRLITGSENGLISLVGILPNRIIQPIAE 261
Query: 121 HSEYPIESLGIAS 133
HSEYP+E L S
Sbjct: 262 HSEYPVEGLAFFS 274
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388511287|gb|AFK43705.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/140 (77%), Positives = 123/140 (87%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+DAMKLL TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 144 MTFASDAMKLLATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGI 203
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRFV LS NS+D ++KLDEDR+ITGSENG+I+LVGILPNRIIQPIAE
Sbjct: 204 ILLYSWGCFKDCSDRFVDLSSNSLDTMVKLDEDRIITGSENGMINLVGILPNRIIQPIAE 263
Query: 121 HSEYPIESLGIASVLCFINS 140
HSEYP+E L + F+ S
Sbjct: 264 HSEYPVERLAFSHDRKFLGS 283
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534870|ref|XP_003535974.1| PREDICTED: WD repeat-containing protein 55-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 228 bits (582), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 107/140 (76%), Positives = 122/140 (87%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTF +DAMKLL TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 141 MTFVSDAMKLLATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGV 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRF LS NS+DA+LKLDEDR+ITGSENG+I+LVGILPNR+IQPIAE
Sbjct: 201 ILLYSWGCFKDCSDRFTDLSSNSIDAMLKLDEDRIITGSENGIINLVGILPNRVIQPIAE 260
Query: 121 HSEYPIESLGIASVLCFINS 140
HSEYP+E L + F+ S
Sbjct: 261 HSEYPVECLAFSHDKKFLGS 280
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357477601|ref|XP_003609086.1| WD-40 repeat protein [Medicago truncatula] gi|355510141|gb|AES91283.1| WD-40 repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 105/140 (75%), Positives = 123/140 (87%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+TFA+DAMK+L TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 205 ITFASDAMKILATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGI 264
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRFV L+ NS+D +LKLDEDR+ITGSENG+I+LVGILPNRII+PIAE
Sbjct: 265 LLLYSWGCFKDCSDRFVDLASNSIDTMLKLDEDRIITGSENGMINLVGILPNRIIEPIAE 324
Query: 121 HSEYPIESLGIASVLCFINS 140
HSEYP+E L + F+ S
Sbjct: 325 HSEYPVERLAFSHDRKFLGS 344
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577598|ref|XP_003556911.1| PREDICTED: WD repeat-containing protein 55-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/140 (75%), Positives = 121/140 (86%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+TF +DAMKLL TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 103 ITFVSDAMKLLATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGI 162
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRF LS NS+DA+LKLDEDR+ITGSEN +I+LVGILPNR+IQPIAE
Sbjct: 163 ILLYSWGCFKDCSDRFTDLSSNSIDAMLKLDEDRIITGSENRIINLVGILPNRVIQPIAE 222
Query: 121 HSEYPIESLGIASVLCFINS 140
HSEYP+E L + F+ S
Sbjct: 223 HSEYPVECLAFSHDRKFLGS 242
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 150 | ||||||
| TAIR|locus:2040804 | 353 | WDR55 "AT2G34260" [Arabidopsis | 0.926 | 0.393 | 0.735 | 4.4e-52 | |
| UNIPROTKB|Q58DT8 | 382 | WDR55 "WD repeat-containing pr | 0.926 | 0.363 | 0.414 | 4.6e-25 | |
| MGI|MGI:1915186 | 388 | Wdr55 "WD repeat domain 55" [M | 0.886 | 0.342 | 0.422 | 2.3e-23 | |
| RGD|1305640 | 384 | Wdr55 "WD repeat domain 55" [R | 0.886 | 0.346 | 0.422 | 2.9e-23 | |
| UNIPROTKB|B2ZZS9 | 400 | wdr55 "WD repeat-containing pr | 0.833 | 0.312 | 0.437 | 5.6e-23 | |
| UNIPROTKB|G3V1J0 | 222 | WDR55 "WD repeat domain 55, is | 0.886 | 0.599 | 0.414 | 1e-22 | |
| UNIPROTKB|Q9H6Y2 | 383 | WDR55 "WD repeat-containing pr | 0.886 | 0.347 | 0.414 | 1e-22 | |
| UNIPROTKB|J9P876 | 854 | IK "Uncharacterized protein" [ | 0.906 | 0.159 | 0.417 | 2.1e-22 | |
| UNIPROTKB|Q5R9T6 | 383 | WDR55 "WD repeat-containing pr | 0.886 | 0.347 | 0.414 | 3.4e-22 | |
| UNIPROTKB|F1RGE2 | 873 | LOC100738153 "Uncharacterized | 0.886 | 0.152 | 0.422 | 2e-21 |
| TAIR|locus:2040804 WDR55 "AT2G34260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 103/140 (73%), Positives = 124/140 (88%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKL+ TSGDGTLSVCNLR + VQ++SEFSE+EL SVV+MKNGRKV+CG+Q+GT
Sbjct: 141 MTFASDSMKLVVTSGDGTLSVCNLRTSKVQSQSEFSEDELLSVVIMKNGRKVICGTQNGT 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRFV L+PNSVDALLKLDEDR+ITG +NG+ISLVGILPNRIIQPI
Sbjct: 201 LLLYSWGFFKDCSDRFVDLAPNSVDALLKLDEDRLITGCDNGIISLVGILPNRIIQPIGS 260
Query: 121 HSEYPIESLGIASVLCFINS 140
H +YPIE L ++ F+ S
Sbjct: 261 H-DYPIEDLALSHDKKFLGS 279
|
|
| UNIPROTKB|Q58DT8 WDR55 "WD repeat-containing protein 55" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 58/140 (41%), Positives = 83/140 (59%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
M D LL SGDG L V N+++ + SE +LTSV LMK GRKV CGS GT
Sbjct: 174 MALDPDKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKYGRKVACGSSEGT 233
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+ L++W F SDRF L S+D ++ + E + GS +G+I V ILPNR++ + +
Sbjct: 234 IYLFNWDGFGATSDRFA-LRAESIDCMVPVTESLLCAGSTDGVIRAVNILPNRVVGSVGQ 292
Query: 121 HSEYPIESLGIASVLCFINS 140
H+E P+E+L ++ CF+ S
Sbjct: 293 HAEEPVENLALSHCGCFLAS 312
|
|
| MGI|MGI:1915186 Wdr55 "WD repeat domain 55" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 57/135 (42%), Positives = 84/135 (62%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 180 AKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVALMKYGKKVACGSSEGTIYLFN 239
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E+ + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 240 WNGFGATSDRFA-LRAESIDCIVPVTENLLCTGSTDGIIRAVNILPNRVVGTVGQHAGEP 298
Query: 126 IESLGIASVLCFINS 140
+E+L ++ F+ S
Sbjct: 299 VEALALSHCGHFLAS 313
|
|
| RGD|1305640 Wdr55 "WD repeat domain 55" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 57/135 (42%), Positives = 83/135 (61%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 179 AKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVALMKYGKKVACGSSEGTIYLFN 238
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E+ + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 239 WNGFGATSDRFA-LRAESIDCMVPVTENLLCTGSTDGIIRAVNILPNRVVGTVGQHAGEP 297
Query: 126 IESLGIASVLCFINS 140
+E L ++ F+ S
Sbjct: 298 VEELALSHCGHFLAS 312
|
|
| UNIPROTKB|B2ZZS9 wdr55 "WD repeat-containing protein 55" [Oryzias latipes (taxid:8090)] | Back alignment and assigned GO terms |
|---|
Score = 266 (98.7 bits), Expect = 5.6e-23, P = 5.6e-23
Identities = 56/128 (43%), Positives = 78/128 (60%)
Query: 4 AADAMK--LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTV 61
A D K LL TSGDGT+ V N+++ + SEF +LTSV LMK G+KVVCGS GTV
Sbjct: 191 AVDQAKRILLTTSGDGTMGVFNIKRRRFELLSEFQSGDLTSVALMKRGKKVVCGSSEGTV 250
Query: 62 LLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121
+++W F SDRF + SVD ++ + + + T S +G I + +LPNR+I I +H
Sbjct: 251 YIFNWNGFGATSDRFA-VKAESVDCIVPITDSIMCTASMDGYIRAINLLPNRVIGCIGQH 309
Query: 122 SEYPIESL 129
PIE +
Sbjct: 310 VGEPIEEI 317
|
|
| UNIPROTKB|G3V1J0 WDR55 "WD repeat domain 55, isoform CRA_b" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 56/135 (41%), Positives = 82/135 (60%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L + N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 18 AKKLLLTASGDGCLGIFNIKRRRFELLSEPQSGDLTSVTLMKWGKKVACGSSEGTIYLFN 77
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 78 WNGFGATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEP 136
Query: 126 IESLGIASVLCFINS 140
+E L ++ F+ S
Sbjct: 137 VEELALSHCGRFLAS 151
|
|
| UNIPROTKB|Q9H6Y2 WDR55 "WD repeat-containing protein 55" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 56/135 (41%), Positives = 82/135 (60%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L + N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 179 AKKLLLTASGDGCLGIFNIKRRRFELLSEPQSGDLTSVTLMKWGKKVACGSSEGTIYLFN 238
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 239 WNGFGATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEP 297
Query: 126 IESLGIASVLCFINS 140
+E L ++ F+ S
Sbjct: 298 VEELALSHCGRFLAS 312
|
|
| UNIPROTKB|J9P876 IK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 58/139 (41%), Positives = 82/139 (58%)
Query: 4 AADAMK--LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTV 61
A D K LL SGDG L V N+R+ + SE +LTSV LMK G+KV CGS GT+
Sbjct: 646 ALDPSKKLLLTASGDGCLGVFNIRRRRFELLSEPQSGDLTSVTLMKYGKKVACGSSEGTI 705
Query: 62 LLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121
L++W F SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H
Sbjct: 706 YLFNWNGFGATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQH 764
Query: 122 SEYPIESLGIASVLCFINS 140
+ P+E L ++ F+ S
Sbjct: 765 AGEPVEKLALSHCTHFLAS 783
|
|
| UNIPROTKB|Q5R9T6 WDR55 "WD repeat-containing protein 55" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 56/135 (41%), Positives = 81/135 (60%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 179 AKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKCGKKVACGSSEGTIYLFN 238
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 239 WNGFGATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEP 297
Query: 126 IESLGIASVLCFINS 140
+ L ++ F+ S
Sbjct: 298 VGELALSHCGRFLAS 312
|
|
| UNIPROTKB|F1RGE2 LOC100738153 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 2.0e-21, P = 2.0e-21
Identities = 57/135 (42%), Positives = 82/135 (60%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L V N+++ + SE +LTSV LMK G+KVVCGS GT+ L++
Sbjct: 668 AKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKCGKKVVCGSSEGTIYLFN 727
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E + GS +G+I V ILPNR++ + +H+ P
Sbjct: 728 WNGFGATSDRFA-LRAESIDCMVPVTESLLCAGSTDGVIRAVHILPNRVVGSVGQHAGEP 786
Query: 126 IESLGIASVLCFINS 140
+E L ++ F+ S
Sbjct: 787 VEKLALSHCGRFLAS 801
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pm.C_LG_IV0224 | hypothetical protein (348 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.XII.1370.1 | hypothetical protein (314 aa) | • | 0.499 | |||||||
 | gw1.IV.3052.1 | hypothetical protein (207 aa) | • | 0.493 | |||||||
 | gw1.5330.2.1 | annotation not avaliable (237 aa) | • | 0.493 | |||||||
 | eugene3.00140830 | hypothetical protein (166 aa) | • | 0.492 | |||||||
 | estExt_Genewise1_v1.C_LG_II1951 | hypothetical protein (332 aa) | • | 0.492 | |||||||
 | gw1.X.5093.1 | hypothetical protein (378 aa) | • | 0.490 | |||||||
 | gw1.XII.1842.1 | hypothetical protein (346 aa) | • | 0.489 | |||||||
 | gw1.IX.47.1 | hypothetical protein (385 aa) | • | 0.488 | |||||||
 | gw1.VIII.402.1 | hypothetical protein (356 aa) | • | 0.487 | |||||||
 | eugene3.00030383 | hypothetical protein (239 aa) | • | 0.486 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 150 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.001 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 2e-04
Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+ F+ D L SGDGT+ V +L + + + V +G + GS T
Sbjct: 15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKT 74
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGS 99
+ L+ +C G + V ++ + R+++ S
Sbjct: 75 IRLWDLE-TGECVRTLTG-HTSYVSSVAFSPDGRILSSS 111
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.001
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
+ +S DGT+ + +LR E+ SV +G K++ S GT+ L+
Sbjct: 150 VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD-LST 208
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVIT-GSENGLISLVGILPNRIIQPIAEHSEYPIES 128
C G N V+++ + ++ GSE+G I + + +Q ++ H+ + S
Sbjct: 209 GKCLGTLRG-HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN-SVTS 266
Query: 129 LGIASVLCFINSG 141
L + + SG
Sbjct: 267 LAWSPDGKRLASG 279
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.004
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+ F+ D KLL +S DGT+ + +L E + SV +G + GS+ GT
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDED--RVITGSENGLI 104
+ ++ +C G NSV + L D R+ +GS +G I
Sbjct: 243 IRVWDLRT-GECVQTLSG-HTNSVTS-LAWSPDGKRLASGSADGTI 285
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 150 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.98 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.96 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.95 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.95 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.95 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.95 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.95 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.94 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.94 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.93 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.92 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.92 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.92 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.91 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.91 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.91 | |
| PTZ00420 | 568 | coronin; Provisional | 99.91 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.91 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.91 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.91 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.91 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.9 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.9 | |
| PTZ00421 | 493 | coronin; Provisional | 99.9 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.9 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.9 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.9 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.89 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.89 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.89 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.89 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.89 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.89 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.89 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.88 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.88 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.88 | |
| PTZ00420 | 568 | coronin; Provisional | 99.88 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.88 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.88 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.88 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.87 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.87 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.86 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.86 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.86 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.86 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.86 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.86 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.86 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.86 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.85 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.85 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.85 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.85 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.85 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.85 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.85 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.84 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.84 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.83 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.83 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.83 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.83 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.83 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.83 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.83 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.83 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.82 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.81 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.81 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.81 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.8 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.79 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.78 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.78 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.78 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.78 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.77 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.76 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.76 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.75 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.74 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.73 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.72 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.72 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.72 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.72 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.71 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.71 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.71 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.71 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.7 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.7 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.7 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.69 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.69 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.69 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.69 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.68 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.67 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.67 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.66 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.65 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.65 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.64 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.64 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.64 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.64 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.64 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.63 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.62 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.61 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.6 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.59 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.58 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.58 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.58 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.58 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.58 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.57 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.57 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.56 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.55 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.55 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.54 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.52 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.52 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.51 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.51 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.5 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.49 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.49 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.49 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.48 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.48 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.47 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.47 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.45 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.44 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.44 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.44 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.43 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.43 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.43 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.43 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.43 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.42 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.42 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.42 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.4 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.4 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.39 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.39 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.38 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.35 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.35 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.35 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.34 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.34 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.33 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.33 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.32 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.31 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.31 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.31 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.3 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.3 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.3 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.3 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.28 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.24 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.24 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.24 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.23 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.23 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.23 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.21 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.21 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.19 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.19 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.18 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.17 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.17 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.16 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.14 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.03 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.03 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.02 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.02 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.02 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.99 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.99 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.97 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.95 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.94 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.91 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.91 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.89 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.88 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.87 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.87 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.85 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.83 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.83 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.82 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.81 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.8 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.77 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.77 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.76 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.75 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.75 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.74 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.74 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.74 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.73 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.71 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.71 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.7 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.67 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.67 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.65 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.63 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 98.62 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.61 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.6 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.6 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.6 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.58 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.55 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.52 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.52 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.5 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.48 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 98.44 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.42 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.39 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 98.39 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.38 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.38 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.37 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.35 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.35 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.35 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.33 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.32 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.31 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.3 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 98.3 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.28 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.25 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.25 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 98.23 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.22 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.22 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.22 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.22 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.21 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.19 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.16 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.15 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 98.07 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.02 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.01 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.99 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.97 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.93 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.9 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.87 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.87 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.84 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.84 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.81 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.77 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.77 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.71 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.68 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.65 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.65 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.63 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.62 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.61 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.61 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.61 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.58 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.56 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.55 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.51 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.5 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.48 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.44 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.35 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.27 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 97.27 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.25 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.23 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.22 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.2 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.19 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.13 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.08 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.06 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.02 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.98 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.97 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.95 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.95 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 96.94 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 96.94 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.88 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.79 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.79 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.71 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.69 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.56 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.53 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.5 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.46 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.34 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.34 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.28 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 96.22 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.16 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.14 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.14 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.99 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.91 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.88 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.88 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 95.85 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.79 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.73 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 95.55 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.51 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 95.48 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.48 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.39 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 95.35 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 95.33 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.33 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 95.32 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.25 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.15 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.12 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.01 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.95 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.94 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 94.91 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.88 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.87 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 94.76 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.7 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.65 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.49 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.39 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 94.32 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.26 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 94.19 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 93.86 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.82 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.64 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.55 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 93.18 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 93.08 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.01 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 92.46 | |
| PRK10115 | 686 | protease 2; Provisional | 92.46 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 92.45 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 92.16 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 91.8 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 91.65 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 91.49 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 91.46 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 91.24 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 91.21 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 91.1 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 90.32 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 90.3 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 90.22 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 90.11 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 90.09 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 89.94 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 89.87 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 89.72 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 89.67 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 89.35 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 88.96 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 88.93 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 88.73 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 88.59 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 88.57 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 88.16 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 87.46 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 86.78 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 86.42 | |
| PF13570 | 40 | PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. | 85.58 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 84.67 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 84.44 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 83.92 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 83.56 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 83.48 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 83.44 | |
| PF08954 | 136 | DUF1900: Domain of unknown function (DUF1900); Int | 83.15 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 82.81 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 82.8 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 81.85 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 81.65 | |
| PF14779 | 257 | BBS1: Ciliary BBSome complex subunit 1 | 80.73 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 80.32 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-31 Score=171.62 Aligned_cols=145 Identities=17% Similarity=0.257 Sum_probs=132.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.|+|+++.|++|++|.++++||+.+..+....++|...|.|++|+|||+.|++|+.||+|++||....++....+.+ |
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~g-H 199 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRG-H 199 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccC-c
Confidence 479999999999999999999999999999999999999999999999999999999999999998766677788999 9
Q ss_pred ccceeEee-e-----cCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-K-----LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~-----~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
..+|++++ . +..+++++++.||.+++||+..++++..+.+|.. +|++++|--+| +|.+|+.+..|.
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~DrtIk 271 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQDRTIK 271 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCCCceEE
Confidence 99999987 2 3567999999999999999999999999999988 79999997766 889999887765
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-32 Score=176.03 Aligned_cols=145 Identities=14% Similarity=0.139 Sum_probs=136.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|+|++|++++.|.+.++||++++..+...++|...|.+++|.+||..+++|+.|..-+|||++ .++++-.+.+ |
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR-tgr~im~L~g-H 344 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR-TGRCIMFLAG-H 344 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecc-cCcEEEEecc-c
Confidence 5899999999999999999999999998887788999999999999999999999999999999997 5688888889 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC-CccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS-VLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v~ 148 (150)
...|..+. +|+|..+++|+.|++++|||++..+.+..+++|... |+.++|+| .|.+|+|++.++.++
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl-VS~Vk~~p~~g~fL~TasyD~t~k 413 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL-VSQVKYSPQEGYFLVTASYDNTVK 413 (459)
T ss_pred ccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch-hhheEecccCCeEEEEcccCccee
Confidence 99999998 999999999999999999999988899999999995 99999999 789999999998876
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-31 Score=180.27 Aligned_cols=144 Identities=19% Similarity=0.213 Sum_probs=136.5
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
.|+|+.++|+++++|+++|+|.+.+.......++|..+|.++.|+|.|-+|++++.|++.++|... ..+..+.+.+ |-
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d-~~~PlRifag-hl 535 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD-HNKPLRIFAG-HL 535 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc-cCCchhhhcc-cc
Confidence 689999999999999999999999999988889999999999999999999999999999999985 3477888899 99
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+-+.|+. +|+..++++|+.|.++|+||..++..++.+.+|.+ +|.+++|||+|++||+|+.++.|.
T Consensus 536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEE
Confidence 9999988 89999999999999999999999999999999999 899999999999999999999875
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=169.36 Aligned_cols=145 Identities=17% Similarity=0.141 Sum_probs=135.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|.|||.++++|+-|..-+|||+++++++..+.+|..+|.+++|+|+|..+++|+.|++++|||++ ..+...++++ |
T Consensus 309 iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR-~r~~ly~ipA-H 386 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR-MRSELYTIPA-H 386 (459)
T ss_pred eEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeec-ccccceeccc-c
Confidence 5799999999999999999999999999999999999999999999999999999999999999997 3467888998 9
Q ss_pred ccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+-|+.+. .| .|.+|++++.|+++++|..++..+++.+.+|++ .|.++++++|+++++|++.+..+.
T Consensus 387 ~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~-kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 387 SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG-KVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred cchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc-ceEEEEeccCCceEEEeccCceee
Confidence 99999887 55 788999999999999999999999999999999 599999999999999999886653
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=157.78 Aligned_cols=144 Identities=17% Similarity=0.207 Sum_probs=128.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc-
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL- 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~- 79 (150)
+..++|+++.++++.|+++++||+.+++..+++.+|...|.+++|++|.+.+++|+.|.+|++|+.. +.+..++...
T Consensus 69 v~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~--g~ck~t~~~~~ 146 (315)
T KOG0279|consen 69 VVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL--GVCKYTIHEDS 146 (315)
T ss_pred eEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec--ccEEEEEecCC
Confidence 3568999999999999999999999999999999999999999999999999999999999999974 5555555431
Q ss_pred cccceeEee-ecC--CCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 80 SPNSVDALL-KLD--EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 80 ~~~~v~~~~-~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+.+.|.|+. +|+ ...|++++.|++|++||+++.+....+.+|..+ ++.+++||||.++++|+-++.+
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~-v~t~~vSpDGslcasGgkdg~~ 216 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGY-VNTVTVSPDGSLCASGGKDGEA 216 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccccc-EEEEEECCCCCEEecCCCCceE
Confidence 378899988 675 679999999999999999999999999999996 9999999999999999988754
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=176.37 Aligned_cols=145 Identities=21% Similarity=0.227 Sum_probs=137.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.|+|-|-++++++.|++-++|.....++.+.+.+|.+.|.|+.|+|+..++++|+.|.++++||.. .+..++.|.| |
T Consensus 499 V~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~-~G~~VRiF~G-H 576 (707)
T KOG0263|consen 499 VQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS-TGNSVRIFTG-H 576 (707)
T ss_pred EEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcC-CCcEEEEecC-C
Confidence 4689999999999999999999999988999999999999999999999999999999999999985 6788999999 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
..+|.++. +|+|++|++|+.||.|.+||+.+++.+..+..|.+ .|.++.|+.||..||+|+.+..|+
T Consensus 577 ~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~ 644 (707)
T KOG0263|consen 577 KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVR 644 (707)
T ss_pred CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEE
Confidence 99999999 99999999999999999999999999999999988 599999999999999999998875
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-29 Score=170.48 Aligned_cols=146 Identities=21% Similarity=0.325 Sum_probs=132.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEc-CCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNL-RKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
++|+|+++++++++.|++|++||+ ..++.++.+++|...|++++|+|+++.+++|+.|++|++||++. +++...+.+
T Consensus 209 ~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~~~~l~~- 286 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GECVRKLKG- 286 (456)
T ss_pred eEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeEEEeeec-
Confidence 579999999999999999999999 44578899999999999999999999999999999999999974 688999999
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCe--eeeeccCCCCc-ceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEY-PIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~-~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|...|+++. +++++++++++.|+.|++||+.++. +...+..++.. +++.+.|+|++.++++++.+..+.
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 999999998 8899999999999999999999988 56777666553 699999999999999999886553
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-28 Score=166.80 Aligned_cols=146 Identities=16% Similarity=0.257 Sum_probs=135.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
+.|+|+++.+++++.++.+++|+....+ ....+.+|...|.+++|+|+++++++++.|+++++||+...+...+.+.+
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 3689999999999999999999997777 66667889999999999999999999999999999999656688899999
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|...|++++ +++++++++|+.|++|++||++++++...+..|.+ +|+.++|++++++|++++.++.|.
T Consensus 245 -H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 245 -HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred -CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEcCCCccEE
Confidence 999999998 88999999999999999999999999999999988 799999999999999999888775
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=165.34 Aligned_cols=146 Identities=16% Similarity=0.254 Sum_probs=131.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++++|||+++++|+.||+|++||..++-+..++..|...|+.+.|+..|+.+++.+.||+|+.||+... +..++|..+.
T Consensus 356 l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTft~P~ 434 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTFTSPE 434 (893)
T ss_pred EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeeecCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999643 7777787523
Q ss_pred ccceeEee-ecCCCEEEEecCCC-cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+....|++ .|.|.++++|+.|. .|.+|++++|+.+..+.+|++ ||.+++|+|++..|+++|.+..|.
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg-PVs~l~f~~~~~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG-PVSGLSFSPDGSLLASGSWDKTVR 503 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC-cceeeEEccccCeEEeccccceEE
Confidence 34444666 77899999999987 799999999999999999999 899999999999999999987764
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=150.08 Aligned_cols=142 Identities=18% Similarity=0.251 Sum_probs=130.0
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEcccccccccccccccccce
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v 84 (150)
+...|+++++|.+..+||+++++.+..+.+|.+.|.++.++| +++.|++|+.|+..++||++. +.+.++|.+ |+.-|
T Consensus 155 dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~g-hesDI 232 (343)
T KOG0286|consen 155 DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEG-HESDI 232 (343)
T ss_pred CCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-cceeEeecc-ccccc
Confidence 467889999999999999999999999999999999999999 899999999999999999984 589999999 99999
Q ss_pred eEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCC-CcceeEEEEcCCccEEEeccccccccC
Q 031924 85 DALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 85 ~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
.++. .|+|.-+++|+.|++.|+||++..+.+..+.... ..+|++++||..|++|..|..+.++|+
T Consensus 233 Nsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~v 299 (343)
T KOG0286|consen 233 NSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNV 299 (343)
T ss_pred ceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeE
Confidence 9998 9999999999999999999999988887774322 257999999999999999999988875
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-27 Score=146.82 Aligned_cols=146 Identities=16% Similarity=0.226 Sum_probs=120.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc------------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY------------ 68 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~------------ 68 (150)
|.|++|.++|++++.||.+-|||.-+....+.+.-....|..++|+|.|+++++|+.|+...||++..
T Consensus 61 ~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~ 140 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRE 140 (343)
T ss_pred eEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeee
Confidence 57999999999999999999999887666555555566666777777766666666666666666531
Q ss_pred ----------------------------------ccccccccccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCC
Q 031924 69 ----------------------------------FKDCSDRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPN 112 (150)
Q Consensus 69 ----------------------------------~~~~~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~ 112 (150)
.++....|.+ |..-|.++. +| +++.+++|+.|+..++||++.+
T Consensus 141 l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G-H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 141 LAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG-HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred ecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC-CcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence 2466667778 888888888 77 8999999999999999999999
Q ss_pred eeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 113 RIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 113 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+.+.+..|+. .|++++|.|+|.-+++|+.++..+
T Consensus 220 ~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcR 254 (343)
T KOG0286|consen 220 QCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCR 254 (343)
T ss_pred ceeEeeccccc-ccceEEEccCCCeeeecCCCceeE
Confidence 99999999988 599999999999999999987654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-27 Score=149.71 Aligned_cols=145 Identities=14% Similarity=0.174 Sum_probs=136.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+++.|.++.+++|+.|++++|||+.+++....+.+|.+.+..+++++...++++++.|+.|+.||+. ..+.++.+-+ |
T Consensus 157 vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe-~nkvIR~YhG-H 234 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE-YNKVIRHYHG-H 234 (460)
T ss_pred EeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech-hhhhHHHhcc-c
Confidence 4678999999999999999999999999999999999999999999999999999999999999996 4588889999 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
-..|.|+. .|.-+.|++|+.|..+|+||+++...+..+.+|.. +|.++.+.|....+++||.+..|+
T Consensus 235 lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 235 LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-PVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC-cceeEEeecCCCceEEecCCceEE
Confidence 99999999 88889999999999999999999999999999988 799999999888999999998775
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=151.54 Aligned_cols=146 Identities=16% Similarity=0.186 Sum_probs=124.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe-----------------------------------------eeeeeccCCCc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-----------------------------------------VQTRSEFSEEE 39 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------------------------------------~~~~~~~~~~~ 39 (150)
+.|+..|.+|++++.|+++.+||..++. +..++.+|.++
T Consensus 282 lKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~ 361 (524)
T KOG0273|consen 282 LKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE 361 (524)
T ss_pred EEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCc
Confidence 3577788888888888888888875442 22356778999
Q ss_pred EEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCC---------CEEEEecCCCcEEEEec
Q 031924 40 LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDE---------DRVITGSENGLISLVGI 109 (150)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~---------~~l~~~~~dg~i~~~d~ 109 (150)
|.++.|+|.|..|++++.|++++||... .......+.. |...|..+. +|.| ..+++++.|++|++||+
T Consensus 362 V~alk~n~tg~LLaS~SdD~TlkiWs~~-~~~~~~~l~~-Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 362 VNALKWNPTGSLLASCSDDGTLKIWSMG-QSNSVHDLQA-HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred eEEEEECCCCceEEEecCCCeeEeeecC-CCcchhhhhh-hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc
Confidence 9999999999999999999999999975 3466677777 887777766 5543 48899999999999999
Q ss_pred cCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 110 LPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
..+.++..+..|.. ||.+++|+|+|+++|+|+.++-|++
T Consensus 440 ~~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~i 478 (524)
T KOG0273|consen 440 ESGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHI 478 (524)
T ss_pred cCCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEe
Confidence 99999999999988 8999999999999999999999875
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=141.25 Aligned_cols=145 Identities=17% Similarity=0.216 Sum_probs=119.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-----------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----------- 69 (150)
+.|..+|+.+++|++||+++|||++...+.+. ..+..+|+++..+|+...|++|..+|.|++||+...
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~-~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN-YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchh-ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 35788999999999999999999998544444 456689999999999999999999999999998643
Q ss_pred -------------------------------------cccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccC
Q 031924 70 -------------------------------------KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILP 111 (150)
Q Consensus 70 -------------------------------------~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~ 111 (150)
-..+.+++. |...+..+. +|++++|++++.|.++++|+.++
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a-h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA-HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec-ccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 012334555 666666554 99999999999999999999987
Q ss_pred C-eeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 112 N-RIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 112 ~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
. +....+..|... +...+||.||+||++|+.++.+.
T Consensus 247 ~~kle~~l~gh~rW-vWdc~FS~dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 247 FFKLELVLTGHQRW-VWDCAFSADGEYLVTASSDHTAR 283 (311)
T ss_pred ceeeEEEeecCCce-EEeeeeccCccEEEecCCCCcee
Confidence 6 566677788885 99999999999999999987654
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=159.17 Aligned_cols=145 Identities=19% Similarity=0.198 Sum_probs=135.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++++|+.++|++||.|++.++|++++.+....+.+|...+.++.|+|..+.+++++.|++|+||.+.+ ..+.++|.| |
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-fSClkT~eG-H 546 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-FSCLKTFEG-H 546 (775)
T ss_pred eEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc-ceeeeeecC-c
Confidence 47899999999999999999999999889999999999999999999999999999999999999964 489999999 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...|.... -.++..|++++.||.+++|++.++.+++++.+|++ .|.+++.+|....++||+.++.+.
T Consensus 547 ~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D-rvWaL~~~~~~~~~~tgg~Dg~i~ 614 (775)
T KOG0319|consen 547 TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND-RVWALSVSPLLDMFVTGGGDGRII 614 (775)
T ss_pred cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc-eeEEEeecCccceeEecCCCeEEE
Confidence 99998766 66889999999999999999999999999999999 699999999999999999998775
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-26 Score=140.79 Aligned_cols=139 Identities=18% Similarity=0.209 Sum_probs=119.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc-CCCcEEEEEEEeC--CCEEEeecCCCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
++|+||.++|++|+.|++|++|+............ +.+.|+|+.|+|+ ...|++++.|+++++||++. .+....+.
T Consensus 111 va~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~ 189 (315)
T KOG0279|consen 111 VAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFI 189 (315)
T ss_pred EEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccc
Confidence 47999999999999999999999886643333333 2789999999998 78899999999999999973 47778888
Q ss_pred cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+ |...++.+. +|||.+.++|+.||.+.+||+..++.+..+ .|.. +|.+++|+|+--.|+.+..
T Consensus 190 g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~-~v~sl~fspnrywL~~at~ 253 (315)
T KOG0279|consen 190 G-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFD-IVNSLCFSPNRYWLCAATA 253 (315)
T ss_pred c-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCC-eEeeEEecCCceeEeeccC
Confidence 9 999999888 999999999999999999999999998888 5556 6999999999887776543
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=149.18 Aligned_cols=138 Identities=18% Similarity=0.171 Sum_probs=126.6
Q ss_pred cceEEEEcCCCeEEEEEcCCC-eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccccee
Q 031924 7 AMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 85 (150)
++.+++|+.|.++.+|+.... +++.+..+|..-|+.+.|+||++++++++-|..|++|+.+ .++.+..|.+ |-..|+
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~-tGk~lasfRG-Hv~~VY 413 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGR-TGKFLASFRG-HVAAVY 413 (480)
T ss_pred cceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCC-Ccchhhhhhh-ccceeE
Confidence 457999999999999997664 4788889999999999999999999999999999999975 6799999999 999999
Q ss_pred Eee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 86 ALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 86 ~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
.+. +.+.++|++|+.|.++++|++++.+..+-+++|.+. |.++.|+|||..+++|+-+-.+
T Consensus 414 qvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DE-Vf~vDwspDG~rV~sggkdkv~ 475 (480)
T KOG0271|consen 414 QVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADE-VFAVDWSPDGQRVASGGKDKVL 475 (480)
T ss_pred EEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCce-EEEEEecCCCceeecCCCceEE
Confidence 988 889999999999999999999999999999999995 9999999999999999876543
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=138.68 Aligned_cols=146 Identities=16% Similarity=0.147 Sum_probs=128.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCC--eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc--cccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRF 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~ 76 (150)
++|+|.|++|++++.|.++.||.-..+ +++..+++|+..|.|++|+++|++|++++.|+.+-+|.....+ .+...+
T Consensus 67 vAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 67 VAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred eeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 589999999999999999999987765 4678999999999999999999999999999999999986333 455667
Q ss_pred ccccccceeEee-ecCCCEEEEecCCCcEEEEecc---CCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 77 VGLSPNSVDALL-KLDEDRVITGSENGLISLVGIL---PNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.. |..-|+.+. +|...+|++++.|.+|++|.-. .-.+.+++..|+. .|.+++|++.|..|++++.++.|.
T Consensus 147 ~~-HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 147 QE-HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVS 220 (312)
T ss_pred cc-ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceE
Confidence 77 999999777 8888999999999999999765 2358899999988 599999999999999999998774
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-27 Score=153.24 Aligned_cols=145 Identities=12% Similarity=0.184 Sum_probs=127.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccC-CCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
|.|++++.++++|+.+|.|++|+..... ++.++.| .+.|++++|+|+...|++++.||+|+|||... .+....+.+
T Consensus 144 m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~-~kee~vL~G- 220 (464)
T KOG0284|consen 144 MKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM-PKEERVLRG- 220 (464)
T ss_pred EEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC-Cchhheecc-
Confidence 5799999999999999999999987653 4444544 48999999999999999999999999999864 355566788
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
|..-++++. +|...++++++.|..|++||.+++.++.++..|.. .|..+.|+|++++|+++|-+-.+..
T Consensus 221 HgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 221 HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKV 290 (464)
T ss_pred CCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEE
Confidence 999999998 88889999999999999999999999999999988 5999999999999999998876643
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=153.13 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=120.6
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCC-------eeeeeeccCCCcEEEEEEEeCC-CEEEeecCCCeEEEEEcccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
++|+| ++++|++++.|++|++||+..+ +.+..+.+|...|.+++|+|++ +.|++++.|++|++||++ .++
T Consensus 81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~-tg~ 159 (493)
T PTZ00421 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE-RGK 159 (493)
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC-CCe
Confidence 47899 8889999999999999999764 2456778999999999999985 689999999999999996 346
Q ss_pred cccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 72 CSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
....+.+ |...|.++. ++++++|++++.|+.|++||+++++.+..+..|.+.....+.|.+++..+++++.
T Consensus 160 ~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~ 231 (493)
T PTZ00421 160 AVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGC 231 (493)
T ss_pred EEEEEcC-CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEec
Confidence 6677778 889999988 8899999999999999999999998888887887643567889998887776654
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=149.84 Aligned_cols=145 Identities=20% Similarity=0.217 Sum_probs=133.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|+...+++++.||+|+|||....+....+.+|.-.|.+++|+|....+++++.|..|++||.+ .+.++.++.+ |
T Consensus 186 lafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr-Sg~cl~tlh~-H 263 (464)
T KOG0284|consen 186 LAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR-SGSCLATLHG-H 263 (464)
T ss_pred eccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC-Ccchhhhhhh-c
Confidence 5899999999999999999999998887777789999999999999999999999999999999986 5689999988 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC-CccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS-VLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v~ 148 (150)
...|..+. .+++++|++++.|..++++|+++.+.++.+.+|+.. ++++.|+| ...+|.+|+.++.|.
T Consensus 264 KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd-v~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 264 KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD-VTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh-heeeccccccccceeeccCCCceE
Confidence 99999888 889999999999999999999999999999999995 99999999 567889999988764
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=143.42 Aligned_cols=145 Identities=14% Similarity=0.238 Sum_probs=133.1
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC---------------CCEEEeecCCCeEEEEEc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN---------------GRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~d~~i~i~~~ 66 (150)
+.+.||.++++++.|.++++|-+.++++...+..|+.++.+++|.|. ++++.+++.|++|++||+
T Consensus 242 ~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv 321 (406)
T KOG0295|consen 242 RVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV 321 (406)
T ss_pred EecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec
Confidence 45678999999999999999999999888888899999999999854 258999999999999999
Q ss_pred ccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 67 GYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
. .+.++.++.+ |.++|..+. +|.|++|+++..|+++++||+++++++..+.+|+.+ +++++|+.+..+++||+.+.
T Consensus 322 ~-tg~cL~tL~g-hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf-vt~lDfh~~~p~VvTGsVdq 398 (406)
T KOG0295|consen 322 S-TGMCLFTLVG-HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF-VTSLDFHKTAPYVVTGSVDQ 398 (406)
T ss_pred c-CCeEEEEEec-ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce-eEEEecCCCCceEEeccccc
Confidence 5 5699999999 999999988 899999999999999999999999999999999997 99999999999999999988
Q ss_pred cccC
Q 031924 146 NVNP 149 (150)
Q Consensus 146 ~v~~ 149 (150)
.+++
T Consensus 399 t~Kv 402 (406)
T KOG0295|consen 399 TVKV 402 (406)
T ss_pred eeee
Confidence 7765
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-26 Score=145.11 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=130.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+++|+-..++++++.|+.|+.||++..+.++...+|-+.|.|++..|.-..|++|+.|.++++||+++ ...+..+.+ |
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt-r~~V~~l~G-H 276 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT-RASVHVLSG-H 276 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc-cceEEEecC-C
Confidence 46788889999999999999999999999999999999999999999999999999999999999985 477788899 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
..+|..+. .+.+..+++|+.|++|++||++.++....+..|.. .+.+++.+|....+|+++.+.
T Consensus 277 ~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~dn 341 (460)
T KOG0285|consen 277 TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPDN 341 (460)
T ss_pred CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCcc
Confidence 99999877 77778899999999999999999999999988877 699999999999999988764
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=148.01 Aligned_cols=146 Identities=18% Similarity=0.294 Sum_probs=132.5
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeee--------ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS--------EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~ 73 (150)
.|+||++++++++.||-|.+|+..+|+..+.+ .-++++|.|+.|+.|...+++|+.||.|++|.++ .+.++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~-tG~Cl 298 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE-TGQCL 298 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe-cchHH
Confidence 58999999999999999999999998754332 3356799999999999999999999999999996 57999
Q ss_pred cccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 74 DRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 74 ~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
.+|..+|...|+|+. +.++..+++++.|.++++--++++++++.+.+|..+ |+.+.|.+||..+.+++.++.|.+
T Consensus 299 RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy-vn~a~ft~dG~~iisaSsDgtvkv 374 (508)
T KOG0275|consen 299 RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY-VNEATFTDDGHHIISASSDGTVKV 374 (508)
T ss_pred HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccc-ccceEEcCCCCeEEEecCCccEEE
Confidence 999744999999998 889999999999999999999999999999999997 999999999999999999998764
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=133.67 Aligned_cols=147 Identities=14% Similarity=0.172 Sum_probs=125.7
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCCe---eeeee-ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-cccc
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNT---VQTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSD 74 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~ 74 (150)
++|+|- |..|++++.|+.|++|+...+. +...+ .+|...|++++|+|.|++|++++.|.++.||.-.... +++.
T Consensus 20 ~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~ 99 (312)
T KOG0645|consen 20 VAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVA 99 (312)
T ss_pred EEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEe
Confidence 478997 8899999999999999998532 23222 4788899999999999999999999999999754222 6778
Q ss_pred ccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCC---eeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
.+.| |++.|+++. +++|++|++++.|..|.+|.+... ++...++.|.. .|..+.|+|...+|+++|.+..|+.
T Consensus 100 ~lEG-HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-DVK~V~WHPt~dlL~S~SYDnTIk~ 176 (312)
T KOG0645|consen 100 TLEG-HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-DVKHVIWHPTEDLLFSCSYDNTIKV 176 (312)
T ss_pred eeec-cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-cccEEEEcCCcceeEEeccCCeEEE
Confidence 8889 999999998 899999999999999999988643 47778889988 5999999999999999999887753
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=133.48 Aligned_cols=142 Identities=18% Similarity=0.278 Sum_probs=120.3
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
...|+++.|++++ ..+|++||+++++ ++..+++|...|+.+.|..+|+++++|+.||+++|||++.. .+ ++.-.
T Consensus 47 eiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~-~~-qR~~~- 122 (311)
T KOG0315|consen 47 EITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL-SC-QRNYQ- 122 (311)
T ss_pred EEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc-cc-chhcc-
Confidence 4678888888884 4599999999876 57888999999999999999999999999999999999852 33 33334
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+..+|+++. +|+...|++|..+|.|++||+....+...+....+.+|+++...|||..++.+...|+.
T Consensus 123 ~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~c 191 (311)
T KOG0315|consen 123 HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNC 191 (311)
T ss_pred CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccE
Confidence 679999988 88999999999999999999988776666555555579999999999999998877765
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-25 Score=153.89 Aligned_cols=142 Identities=19% Similarity=0.206 Sum_probs=119.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC--------------------------------C---------------------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK--------------------------------N--------------------- 27 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~--------------------------------~--------------------- 27 (150)
|.|++||++||+|++|+.|+||.+.. .
T Consensus 273 mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~ 352 (712)
T KOG0283|consen 273 MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPL 352 (712)
T ss_pred EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCC
Confidence 57999999999999999999998654 0
Q ss_pred -------eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ec-CCCEEEEe
Q 031924 28 -------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KL-DEDRVITG 98 (150)
Q Consensus 28 -------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~l~~~ 98 (150)
+++..+.+|.+.|.++.|+.+ ++|++++.|.++++|++. ...++..|. |.+-|+|+. +| |.+++++|
T Consensus 353 ~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~-~~~CL~~F~--HndfVTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 353 KAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPG-RKECLKVFS--HNDFVTCVAFNPVDDRYFISG 428 (712)
T ss_pred ccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCC-CcceeeEEe--cCCeeEEEEecccCCCcEeec
Confidence 112356788899999999975 579999999999999996 458888885 899999998 55 88999999
Q ss_pred cCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 99 SENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 99 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+-||.+|+|++...+...-...+ +. |++++|.|||++.+.|+..|.+.
T Consensus 429 SLD~KvRiWsI~d~~Vv~W~Dl~-~l-ITAvcy~PdGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 429 SLDGKVRLWSISDKKVVDWNDLR-DL-ITAVCYSPDGKGAVIGTFNGYCR 476 (712)
T ss_pred ccccceEEeecCcCeeEeehhhh-hh-heeEEeccCCceEEEEEeccEEE
Confidence 99999999999887766554333 54 99999999999999999998764
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-25 Score=153.94 Aligned_cols=146 Identities=14% Similarity=0.237 Sum_probs=137.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|....++++--+|.|++||.+-+.++.++..|+++|..++|+|.+..|++|+.|-+|++|+.. ..+++.++.+ |
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk-~rrclftL~G-H 92 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK-TRRCLFTLLG-H 92 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc-cceehhhhcc-c
Confidence 5799999999999999999999999999999999999999999999999999999999999999985 4589999999 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
.+-|..+. ++.-.++++++.|.+|++|+..+++++..+.+|.-+ |.|..|+|....++|+|++..|.+
T Consensus 93 lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHY-VMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 93 LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHY-VMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceE-EEeeccCCccceEEEecccceEEE
Confidence 99999888 777889999999999999999999999999999987 999999999999999999988764
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-24 Score=146.86 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=130.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCC-eeeeeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++.+|...++++++.|-+|++||.+.+ .+.+.+++|+..|.+++|+| |.+.|++++.|++|++|.+.. ..+..++.+
T Consensus 103 iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~g 181 (794)
T KOG0276|consen 103 IAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEG 181 (794)
T ss_pred eeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeec
Confidence 467899999999999999999999875 46788999999999999999 578899999999999999964 367788889
Q ss_pred ccccceeEeeec---CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 79 LSPNSVDALLKL---DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 79 ~~~~~v~~~~~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|+..|.|+... +..++++|+.|..+++||.++..+++++.+|... |..+.|+|.-..++|||-++.|.
T Consensus 182 -HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N-vs~v~fhp~lpiiisgsEDGTvr 252 (794)
T KOG0276|consen 182 -HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN-VSFVFFHPELPIIISGSEDGTVR 252 (794)
T ss_pred -cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc-ceEEEecCCCcEEEEecCCccEE
Confidence 99999999833 3459999999999999999999999999999884 99999999999999999999874
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-24 Score=140.82 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=131.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCC---------CEEEeecCCCeEEEEEcccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG---------RKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
|.|+|.+.+|++++.|++++||..........+..|...+..+.|+|.| ..+++++.|++|++||+. .+.
T Consensus 365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~-~gv 443 (524)
T KOG0273|consen 365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE-SGV 443 (524)
T ss_pred EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc-CCc
Confidence 4789999999999999999999998888888999999999999999864 468999999999999985 568
Q ss_pred cccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccCC
Q 031924 72 CSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNPL 150 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~~ 150 (150)
++..|.. |..+|.++. +|+++++++|+.||.|.+|+.++++..+.+... + .|..++|+.+|.++..+..++.+++|
T Consensus 444 ~i~~f~k-H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~-~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 444 PIHTLMK-HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-G-GIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred eeEeecc-CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-C-eEEEEEEcCCCCEEEEEecCCCceEE
Confidence 8888988 999999998 999999999999999999999999999998654 4 39999999999999998888877653
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=128.33 Aligned_cols=142 Identities=17% Similarity=0.214 Sum_probs=121.4
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-ccccccccccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRFVGLSP 81 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~ 81 (150)
.+.|+..++++++|..+.+||+++|+..+++.+|.++|+.++|+.+...+++|+.|.++++||-+... ++++.+.. ..
T Consensus 67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde-a~ 145 (307)
T KOG0316|consen 67 LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-AK 145 (307)
T ss_pred ccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-hc
Confidence 35577899999999999999999999999999999999999999999999999999999999987543 56666665 55
Q ss_pred cceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 82 NSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
+.|.++. ..+..|++|+.||++|.||++.++...-+..| ||+++.|++|++....++++..+.-
T Consensus 146 D~V~Si~-v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrL 209 (307)
T KOG0316|consen 146 DGVSSID-VAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRL 209 (307)
T ss_pred CceeEEE-ecccEEEeeccCCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeee
Confidence 6666654 34678999999999999999998876555444 8999999999999999999887754
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-24 Score=148.85 Aligned_cols=144 Identities=15% Similarity=0.252 Sum_probs=122.8
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
+.|++ ...+|++|+.||+|++||++..+......+..+.+++++|+|. +..|+++...|.+++||++...++..++..
T Consensus 139 ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A 218 (839)
T KOG0269|consen 139 LDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA 218 (839)
T ss_pred eeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc
Confidence 35666 4568889999999999999998877777788889999999995 788999999999999999988889999988
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc-EEEeccccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC-FINSGFLSL 145 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~~~ 145 (150)
|.+++.|+. +|++.+|++|+.|+.|++||+.+.+.......+...|+.+++|-|... .||++++-+
T Consensus 219 -H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~ 286 (839)
T KOG0269|consen 219 -HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVV 286 (839)
T ss_pred -ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccc
Confidence 999999998 889999999999999999999866544444445556899999999765 578877644
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-24 Score=136.96 Aligned_cols=145 Identities=14% Similarity=0.213 Sum_probs=134.7
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
-|+|+...+++++.|.+|++||..+++....+++|.+.+.+++|+..|+++++++.|-.+++||+...-++++...+ |.
T Consensus 115 ~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g-h~ 193 (406)
T KOG0295|consen 115 IFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG-HE 193 (406)
T ss_pred eeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcC-cc
Confidence 47889899999999999999999999999999999999999999999999999999999999999765577778888 99
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
..|.+++ -|.|.++++++.|.+|+.|+..++.++.++.+|.+. +.-++.+.||.++|+|+.+..|.
T Consensus 194 h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ew-vr~v~v~~DGti~As~s~dqtl~ 260 (406)
T KOG0295|consen 194 HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEW-VRMVRVNQDGTIIASCSNDQTLR 260 (406)
T ss_pred cceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHh-EEEEEecCCeeEEEecCCCceEE
Confidence 9999888 888999999999999999999999999999999995 99999999999999999987764
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=132.01 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=125.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
+.|.+|++.|++++.|++++.||+++|+.+++.+.|...++.+.-+.-|..+ .+++.|+++++||++. +..++++..
T Consensus 96 l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-k~~~~t~~~- 173 (338)
T KOG0265|consen 96 LHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-KEAIKTFEN- 173 (338)
T ss_pred eeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-cchhhcccc-
Confidence 4688999999999999999999999999999999999999999855556555 5788999999999974 466666654
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...++++. .-.+..+++|+-|+.|++||++.+..+..+.+|.+ +|+.+..+|+|.++.+-+++..+.
T Consensus 174 -kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvr 241 (338)
T KOG0265|consen 174 -KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVR 241 (338)
T ss_pred -ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEE
Confidence 55677777 55778999999999999999999999999999999 799999999999999999887664
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-23 Score=137.15 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=119.6
Q ss_pred eeecC-cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCC-CEEEeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
.|+|+ +..+++|+.|+.+++||+.+...+..+.+|++.|.|.+|+|.. ..+++|++||+|++||.+.....+..+ .
T Consensus 117 ~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-n- 194 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-N- 194 (487)
T ss_pred EecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-c-
Confidence 47775 5567778889999999999987777889999999999999964 478999999999999998655455555 3
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCccEEEeccccccccCC
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNPL 150 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~~ 150 (150)
|..+|..+. -|.|..+++++. ..|++||+.+ ++.+..+..|.. .|+|+++..++..|.+|++++.|+.+
T Consensus 195 hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVf 265 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNK-TVTCLRLASDSTRLLSGSLDRHVKVF 265 (487)
T ss_pred CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccc-eEEEEEeecCCceEeecccccceEEE
Confidence 788999888 667788888764 5899999985 455566655877 59999999999999999999998763
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-23 Score=135.02 Aligned_cols=144 Identities=19% Similarity=0.243 Sum_probs=126.8
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc--CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
..+|.+.||++++.|+++.+.|++++..+..... ..-.+++.+|+|||..|.+|..|+.+++||+.. +.....|++
T Consensus 310 s~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks-~~~~a~Fpg- 387 (506)
T KOG0289|consen 310 SLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS-QTNVAKFPG- 387 (506)
T ss_pred eeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC-ccccccCCC-
Confidence 3578999999999999999999999987765543 234689999999999999999999999999964 468889999
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
|..+|+.+. +.+|.++++++.|+.|++||++.-+..+++...+.+++.++.|++.|++|+.++.+..|
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 999999998 78999999999999999999998888888876665679999999999999999877665
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-24 Score=139.64 Aligned_cols=146 Identities=13% Similarity=0.205 Sum_probs=118.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc----------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF---------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~---------- 69 (150)
+.||||.+++++|+.+..+.+||+.+|....... ++...+.+++|.|||..+++|+.|+++..||++..
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~ 354 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRD 354 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccccc
Confidence 5799999999999999999999999997765443 34568999999999999999999999999997532
Q ss_pred ------------------------------------------------------------------------cccccccc
Q 031924 70 ------------------------------------------------------------------------KDCSDRFV 77 (150)
Q Consensus 70 ------------------------------------------------------------------------~~~~~~~~ 77 (150)
.+.++++.
T Consensus 355 ~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~ 434 (519)
T KOG0293|consen 355 PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF 434 (519)
T ss_pred ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh
Confidence 12223333
Q ss_pred cccccc---eeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC-CccEEEecccccccc
Q 031924 78 GLSPNS---VDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS-VLCFINSGFLSLNVN 148 (150)
Q Consensus 78 ~~~~~~---v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v~ 148 (150)
| |... |.++. ..+..++++|++|+.|++|+..+++++..+.+|.. .|++++|+| +...+|++|.++.|.
T Consensus 435 G-hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~-~vNcVswNP~~p~m~ASasDDgtIR 508 (519)
T KOG0293|consen 435 G-HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK-TVNCVSWNPADPEMFASASDDGTIR 508 (519)
T ss_pred c-ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc-eeeEEecCCCCHHHhhccCCCCeEE
Confidence 4 4332 33333 44567999999999999999999999999999998 599999999 556899999999874
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=130.08 Aligned_cols=144 Identities=15% Similarity=0.192 Sum_probs=123.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCC-eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
+.|+|++..+++++.|..|.+|+.... +....+++|.+.|..+.|.+|++.+++++.|.+++.||.+ .++...++++
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~-tG~~~rk~k~- 130 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE-TGKRIRKHKG- 130 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc-cceeeehhcc-
Confidence 469999999999999999999996543 3456778999999999999999999999999999999986 6788999999
Q ss_pred cccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|..-+.++. .. ...++.+++.|+++++||++++..++++... +.++++.|..++..+.+|+.++.|.
T Consensus 131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k--yqltAv~f~d~s~qv~sggIdn~ik 199 (338)
T KOG0265|consen 131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK--YQLTAVGFKDTSDQVISGGIDNDIK 199 (338)
T ss_pred ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc--eeEEEEEecccccceeeccccCcee
Confidence 988888877 22 3457888999999999999999888887432 3599999999999999999887664
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=130.55 Aligned_cols=145 Identities=23% Similarity=0.352 Sum_probs=126.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.|+|+++++++++.++.+++||++.++....+..+...+.++.|+|+++.+++++.++.+++||++. ++....+.. |
T Consensus 141 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~-~ 218 (289)
T cd00200 141 VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST-GKCLGTLRG-H 218 (289)
T ss_pred EEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCC-Cceecchhh-c
Confidence 46788888888888899999999998888888888888999999999999999999999999999863 466666766 7
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.++. .+++.++++++.|+.+++|++.+++....+..|.. ++.+++|+|++.++++++.++.+.
T Consensus 219 ~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 219 ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN-SVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCC-cEEEEEECCCCCEEEEecCCCeEE
Confidence 77888887 77788888888899999999998888888888877 699999999999999999988765
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=140.81 Aligned_cols=141 Identities=12% Similarity=0.065 Sum_probs=112.8
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCCe--------eeeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEccccc
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFK 70 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~ 70 (150)
++|+|+ +++|++++.|++|++||+.++. .+..+.+|...|.+++|+|++..+ ++++.|++|++||++..
T Consensus 80 lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg- 158 (568)
T PTZ00420 80 LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE- 158 (568)
T ss_pred EEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC-
Confidence 478996 7899999999999999997642 234567899999999999998764 68899999999999643
Q ss_pred ccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeE-----EEEcCCccEEEecccc
Q 031924 71 DCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES-----LGIASVLCFINSGFLS 144 (150)
Q Consensus 71 ~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~l~s~~~~ 144 (150)
+....+. +...+.++. +++|.+|++++.|+.|++||+++++.+..+..|.+ .+.. ..|++++.++++++.+
T Consensus 159 ~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g-~~~s~~v~~~~fs~d~~~IlTtG~d 235 (568)
T PTZ00420 159 KRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDG-GKNTKNIWIDGLGGDDNYILSTGFS 235 (568)
T ss_pred cEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccC-CceeEEEEeeeEcCCCCEEEEEEcC
Confidence 4444443 456788887 88999999999999999999999998888888876 3332 2356898998887765
Q ss_pred c
Q 031924 145 L 145 (150)
Q Consensus 145 ~ 145 (150)
.
T Consensus 236 ~ 236 (568)
T PTZ00420 236 K 236 (568)
T ss_pred C
Confidence 3
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=147.33 Aligned_cols=145 Identities=16% Similarity=0.241 Sum_probs=122.2
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++|+| ++.+|++++.|++|++||+++++.+..+..+ ..+.++.|++ ++..|++|+.||.|++||++........+.+
T Consensus 581 l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~ 659 (793)
T PLN00181 581 IDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG 659 (793)
T ss_pred EEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC
Confidence 46886 7889999999999999999998877776644 6789999964 6999999999999999999754334566778
Q ss_pred ccccceeEeeecCCCEEEEecCCCcEEEEeccC------CeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILP------NRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|...|.++...++..+++++.|+.|++||+.. .+.+..+..|.. .+..++|+|++.+|++|+.++.|.
T Consensus 660 -h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~ 733 (793)
T PLN00181 660 -HSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVF 733 (793)
T ss_pred -CCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEE
Confidence 98899988866888999999999999999974 246677878877 599999999999999999888764
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=127.62 Aligned_cols=144 Identities=13% Similarity=0.120 Sum_probs=122.3
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
.|++ +.+.+++++-|++|++|+...++.+.++.+|...|...+|+|. .+.+++++.|+++++||++..++... +..
T Consensus 111 dwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~a- 188 (311)
T KOG0277|consen 111 DWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEA- 188 (311)
T ss_pred ccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEe-
Confidence 4555 4567778899999999999999999999999999999999996 78899999999999999987766554 666
Q ss_pred cccceeEee--ecCCCEEEEecCCCcEEEEeccCCe-eeeeccCCCCcceeEEEEcCC-ccEEEecccccccc
Q 031924 80 SPNSVDALL--KLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLGIASV-LCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~~~~v~ 148 (150)
|...+.++. ..+.+.+++|+.|+.|+.||++.-+ ++..+.+|.- .|+.++|||. ..+||+++.++.++
T Consensus 189 h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~r 260 (311)
T KOG0277|consen 189 HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGL-AVRKVKFSPHHASLLASASYDMTVR 260 (311)
T ss_pred ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCce-EEEEEecCcchhhHhhhccccceEE
Confidence 887888876 4588899999999999999998754 6778878866 6999999995 46899999887664
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=135.93 Aligned_cols=145 Identities=16% Similarity=0.210 Sum_probs=125.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeec---cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
+.|+|||+++++.+.||++.+||-.+++.+..+. +|.+.|.+++|+||++.+++++.|.++++||+.. .++++++.
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~-~slv~t~~ 274 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST-NSLVSTWP 274 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec-cceEEEee
Confidence 4799999999999999999999999999888877 8999999999999999999999999999999964 47777765
Q ss_pred ccc---ccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 78 GLS---PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 78 ~~~---~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
... ...+-|++. +..|++-+.+|.|.+++.....+++.+.+|.. +|+++..+||+++|.+|+.+|-|+.
T Consensus 275 ~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~SgsyDG~I~~ 346 (603)
T KOG0318|consen 275 MGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSGSYDGHINS 346 (603)
T ss_pred cCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEeeccCceEEE
Confidence 301 223334433 67889999999999999998889999999988 6999999999999999999998863
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-22 Score=128.20 Aligned_cols=145 Identities=18% Similarity=0.284 Sum_probs=125.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|+++++++++.++.+++|++.+++.......|...+..+.|+|+++.+++++.+|.+++|++.. ++....+.. |
T Consensus 15 ~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~-~~~~~~~~~-~ 92 (289)
T cd00200 15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET-GECVRTLTG-H 92 (289)
T ss_pred EEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc-ccceEEEec-c
Confidence 47899999999999999999999998887777888888999999999999999999999999999863 356666777 7
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.++. .++++++++++.++.+++||+.+++....+..|.. ++.+++|+|++.++++++.++.|.
T Consensus 93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD-WVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCC-cEEEEEEcCcCCEEEEEcCCCcEE
Confidence 77888887 66778888888899999999998888888877877 699999999999999988666553
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=125.95 Aligned_cols=144 Identities=15% Similarity=0.198 Sum_probs=120.1
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc----------
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF---------- 69 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~---------- 69 (150)
++|+| ...++++++.|.+|++||.+++++........+. .-+.|+|+|+++++++.|..|...|.++.
T Consensus 70 l~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~ 148 (313)
T KOG1407|consen 70 LCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF 148 (313)
T ss_pred heeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc
Confidence 35666 5679999999999999999999998777654444 45789999999999999999998887643
Q ss_pred ------------------------------cccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec
Q 031924 70 ------------------------------KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 70 ------------------------------~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
-+.++.++. |+....|+. .|+|+++++|+.|..+.+||+..--+++.+
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~A-H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKA-HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI 227 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEecccccccccccc-CCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence 133445566 887777777 899999999999999999999888888889
Q ss_pred cCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 119 AEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 119 ~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
..+.- ||+.+.|+.||++||+||-+..|
T Consensus 228 sRldw-pVRTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 228 SRLDW-PVRTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred ccccC-ceEEEEeccCcceeeccCccceE
Confidence 88755 99999999999999999987654
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-23 Score=142.37 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=134.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.+|||+++|+++--|+++++|-+.+-+....+.+|.-+|.|+.++||++.+++|+.|.+|++|-+. .|.+-+.+.+ |
T Consensus 514 v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd-FGDCHKS~fA-H 591 (888)
T KOG0306|consen 514 VSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD-FGDCHKSFFA-H 591 (888)
T ss_pred EEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc-cchhhhhhhc-c
Confidence 4689999999999999999999999999888999999999999999999999999999999999984 7899999988 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+.|.++. -|+...+.+++.|+.|+.||...-+.++.+.+|.. .|.+++.+|+|.+++++|.+.+|.
T Consensus 592 dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~-ev~cLav~~~G~~vvs~shD~sIR 659 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS-EVWCLAVSPNGSFVVSSSHDKSIR 659 (888)
T ss_pred cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchh-eeeeeEEcCCCCeEEeccCCceeE
Confidence 99999887 77888999999999999999998899999999988 499999999999999999987764
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-24 Score=141.39 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=127.6
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCC-CeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
.|.| .+.+|++++.|+.|+||++.. +++++.+.+|..+|.+++|+++|..|.+++.|+++++||.+ .|+++.+|..
T Consensus 221 ~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE-TG~~~~~f~~- 298 (503)
T KOG0282|consen 221 QWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE-TGQVLSRFHL- 298 (503)
T ss_pred hhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc-cceEEEEEec-
Confidence 4667 788999999999999999987 77899999999999999999999999999999999999986 6788888864
Q ss_pred cccceeEee-ecCC-CEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...++|+. .|++ +.+++|+.|+.|+.||+++++.++.+..|-+ +|..+.|-++|+.+++.+.+.++.
T Consensus 299 -~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~rFissSDdks~r 367 (503)
T KOG0282|consen 299 -DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGRRFISSSDDKSVR 367 (503)
T ss_pred -CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCceEeeeccCccEE
Confidence 45566776 6766 8999999999999999999999999988888 699999999999999998877653
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-22 Score=137.14 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=114.9
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeee-------------eeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEcccc
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQ-------------TRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~ 69 (150)
++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++++.|++|++||+...
T Consensus 29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~ 108 (493)
T PTZ00421 29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEE 108 (493)
T ss_pred cCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCC
Confidence 456566666666666666765443211 23568899999999999 7899999999999999998643
Q ss_pred c------ccccccccccccceeEee-ecCC-CEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 70 K------DCSDRFVGLSPNSVDALL-KLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 70 ~------~~~~~~~~~~~~~v~~~~-~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
+ ..+..+.+ |...|.++. +|.+ ++|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+|.+|+++
T Consensus 109 ~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~-~V~sla~spdG~lLatg 186 (493)
T PTZ00421 109 GLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD-QITSLEWNLDGSLLCTT 186 (493)
T ss_pred ccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC-ceEEEEEECCCCEEEEe
Confidence 2 23456778 999999888 6654 6999999999999999999988888888888 69999999999999999
Q ss_pred ccccccc
Q 031924 142 FLSLNVN 148 (150)
Q Consensus 142 ~~~~~v~ 148 (150)
+.++.|.
T Consensus 187 s~Dg~Ir 193 (493)
T PTZ00421 187 SKDKKLN 193 (493)
T ss_pred cCCCEEE
Confidence 9988775
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=129.85 Aligned_cols=146 Identities=14% Similarity=0.161 Sum_probs=124.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-----------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----------- 69 (150)
|.|+|-...|+.|+.||.+.+|.+..+...+.+.+|..++++-.|.|+|++++++..||+|++|+..+.
T Consensus 154 l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~ 233 (399)
T KOG0296|consen 154 LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG 233 (399)
T ss_pred EEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc
Confidence 578999999999999999999999998778888999999999999999999999999999999998542
Q ss_pred --------------------------------------------------------------------------------
Q 031924 70 -------------------------------------------------------------------------------- 69 (150)
Q Consensus 70 -------------------------------------------------------------------------------- 69 (150)
T Consensus 234 ~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iy 313 (399)
T KOG0296|consen 234 LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIY 313 (399)
T ss_pred CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEE
Confidence
Q ss_pred ---cccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 70 ---KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 70 ---~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
....+..-. |+..|..+...+..+|++++.+|.|+.||.++++++..+.+|.. +|.+++++|++++++|+|.++.
T Consensus 314 D~a~~~~R~~c~-he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 314 DLAASTLRHICE-HEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQM-GILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred ecccchhheecc-CCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCch-heeEEEEcCCCcEEEEecCCCe
Confidence 001111113 66677777644477999999999999999999999999999988 7999999999999999998765
Q ss_pred cc
Q 031924 147 VN 148 (150)
Q Consensus 147 v~ 148 (150)
..
T Consensus 392 a~ 393 (399)
T KOG0296|consen 392 AL 393 (399)
T ss_pred EE
Confidence 43
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=125.25 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=120.1
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCC-CeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccccccccc
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
++|+++ .+.++++++||.+++||+.. .+++..++.|..+|.++.|++- ++.+++++.|++|++|+.. .++.+++|.
T Consensus 66 V~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~Tf~ 144 (311)
T KOG0277|consen 66 VAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQTFN 144 (311)
T ss_pred eeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEeec
Confidence 478875 56888899999999999654 3478888999999999999984 6667888999999999974 558889999
Q ss_pred cccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC-CccEEEecccccccc
Q 031924 78 GLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS-VLCFINSGFLSLNVN 148 (150)
Q Consensus 78 ~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v~ 148 (150)
+ |...|.... +| .++++++++.|+.+++||++.......+..|.. .|.++.|+. +.+.++||+.+..|.
T Consensus 145 g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~-Eil~cdw~ky~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 145 G-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS-EILCCDWSKYNHNVLATGGVDNLVR 216 (311)
T ss_pred C-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc-eeEeecccccCCcEEEecCCCceEE
Confidence 9 999998776 44 788999999999999999975333334778876 499999997 778899999887664
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-22 Score=127.37 Aligned_cols=145 Identities=12% Similarity=0.156 Sum_probs=126.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++.+|+.+++++|++|..-.+|++.++.....+.+|.+.|+++.|+.+|.+|++|+.+|.|++|+..+ +.....+.. .
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st-g~~~~~~~~-e 147 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST-GGEQWKLDQ-E 147 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc-CceEEEeec-c
Confidence 35689899999999999999999999999999999999999999999999999999999999999864 344444433 3
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.-+. +|.+..|++|+.||.+.+|.+.++...+.+.+|.. ++++=.|.|+|+.++++..++.|.
T Consensus 148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGYDDGTII 215 (399)
T ss_pred cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEecCceEE
Confidence 44556665 88999999999999999999988788889989877 799999999999999999988774
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-22 Score=137.22 Aligned_cols=143 Identities=13% Similarity=0.180 Sum_probs=126.9
Q ss_pred CeeecCcceEEEEcC-CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
+.|+..|..|+.++. =|.+-+|+.++...+.+.++|...+++++++|||+++++|+.||+|++||.. .+-+..+|..
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-SgfC~vTFte- 390 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-SGFCFVTFTE- 390 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc-CceEEEEecc-
Confidence 357778999998864 5899999999988888889999999999999999999999999999999985 5689999999
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
|...++.+. ...++.+++.+-||+|+.||+...+..+++.........+++.+|.|.+++.|+.+.
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~ 457 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS 457 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccce
Confidence 999999998 789999999999999999999999999988765443477889999999999988753
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=142.57 Aligned_cols=142 Identities=11% Similarity=0.123 Sum_probs=118.6
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
+|+| ++.+|++++.|++|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++|+.|++|++||++. +.....+..
T Consensus 539 ~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~~~- 616 (793)
T PLN00181 539 CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGTIKT- 616 (793)
T ss_pred EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEEEec-
Confidence 5666 478999999999999999999988888999999999999997 789999999999999999963 455555554
Q ss_pred cccceeEee--ecCCCEEEEecCCCcEEEEeccCCe-eeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL--KLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+ ..+.++. ++++..+++|+.||.|++||++..+ .+..+..|.. +|..+.|. ++.++++++.++.|+
T Consensus 617 ~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~~~lvs~s~D~~ik 685 (793)
T PLN00181 617 K-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DSSTLVSSSTDNTLK 685 (793)
T ss_pred C-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CCCEEEEEECCCEEE
Confidence 3 4566665 4578999999999999999998755 4666778877 69999997 688899999888764
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.7e-23 Score=131.55 Aligned_cols=141 Identities=16% Similarity=0.206 Sum_probs=105.7
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe-----------------------------------
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK----------------------------------- 47 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~----------------------------------- 47 (150)
...+.+.|++|+.|.+|++||+++++++..+..|.+.|..+.|+.
T Consensus 243 Lqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 243 LQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred eeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 345677888999999999999999887766666666666666541
Q ss_pred ------CCCEEEeecCCCeEEEEEcccccccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCC
Q 031924 48 ------NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (150)
Q Consensus 48 ------~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 121 (150)
+.+++++++.|.+|++|++. ....+.++.+ |...|.|+ ...++++++|++|.+|++||+..|.+++.+.+|
T Consensus 323 VNvVdfd~kyIVsASgDRTikvW~~s-t~efvRtl~g-HkRGIACl-QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGH 399 (499)
T KOG0281|consen 323 VNVVDFDDKYIVSASGDRTIKVWSTS-TCEFVRTLNG-HKRGIACL-QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH 399 (499)
T ss_pred eeeeccccceEEEecCCceEEEEecc-ceeeehhhhc-ccccceeh-hccCeEEEecCCCceEEEEeccccHHHHHHhch
Confidence 22355555555555555542 3456666777 77776665 456789999999999999999999999999999
Q ss_pred CCcceeEEEEcCCccEEEeccccccccC
Q 031924 122 SEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 122 ~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
++. |.++.|+ .+.+++|+.+|.|..
T Consensus 400 EeL-vRciRFd--~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 400 EEL-VRCIRFD--NKRIVSGAYDGKIKV 424 (499)
T ss_pred HHh-hhheeec--CceeeeccccceEEE
Confidence 995 9999984 567999999998753
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-23 Score=136.82 Aligned_cols=144 Identities=13% Similarity=0.174 Sum_probs=109.4
Q ss_pred eeecC-cceEEEEcCCCeEEEEEcCCCeeeee-ec-----cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-ccc
Q 031924 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTR-SE-----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCS 73 (150)
Q Consensus 2 ~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~-~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~ 73 (150)
+|+|+ .+.+++++.||++++||+...+.... ++ +..-+++.++|+++|+.|++|+.||.|.+|+.+... +..
T Consensus 275 ~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~ 354 (641)
T KOG0772|consen 275 CWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV 354 (641)
T ss_pred ccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc
Confidence 68996 45788999999999999987553222 21 223378999999999999999999999999975332 222
Q ss_pred ccccccccc--ceeEee-ecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCC-CcceeEEEEcCCccEEEeccccc
Q 031924 74 DRFVGLSPN--SVDALL-KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHS-EYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 74 ~~~~~~~~~--~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
..+..+|.. .|+|+. +++|++|++-+.|+++++||++. ++++.....-. .++-+.++|||+.++|++|...-
T Consensus 355 ~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~ 431 (641)
T KOG0772|consen 355 MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAP 431 (641)
T ss_pred eEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccccc
Confidence 223222655 789998 89999999999999999999986 44555554322 25677899999999999998653
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=143.09 Aligned_cols=141 Identities=13% Similarity=0.066 Sum_probs=121.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC------------------CeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEE
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK------------------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVL 62 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 62 (150)
+.|+|||++||+|+.|..|.||+... .+....+.+|...|..++|+|++.+|++++.|++|.
T Consensus 75 VR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVi 154 (942)
T KOG0973|consen 75 VRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVI 154 (942)
T ss_pred EEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEE
Confidence 46999999999999999999999872 124567789999999999999999999999999999
Q ss_pred EEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCC-----cceeEEEEcCCcc
Q 031924 63 LYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE-----YPIESLGIASVLC 136 (150)
Q Consensus 63 i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~ 136 (150)
+|+..+. +.+..+.+ |...|..+. .|-|++|++-+.|++|++|.+.+-...+.+.++.+ .-..++.|||||+
T Consensus 155 iwn~~tF-~~~~vl~~-H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~ 232 (942)
T KOG0973|consen 155 IWNAKTF-ELLKVLRG-HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH 232 (942)
T ss_pred EEccccc-eeeeeeec-ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC
Confidence 9999876 88889999 999999888 99999999999999999999876656665544322 1288999999999
Q ss_pred EEEeccc
Q 031924 137 FINSGFL 143 (150)
Q Consensus 137 ~l~s~~~ 143 (150)
+|++.-.
T Consensus 233 ~las~nA 239 (942)
T KOG0973|consen 233 HLASPNA 239 (942)
T ss_pred eecchhh
Confidence 9998654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=134.05 Aligned_cols=144 Identities=16% Similarity=0.184 Sum_probs=129.7
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 82 (150)
|-+-.+.+++|+.|..|++|+..+++.++.++.|.+.+++++.+|...++++++.|.+|++||++..-.+.++|.+ |..
T Consensus 63 fiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG-H~H 141 (794)
T KOG0276|consen 63 FIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG-HEH 141 (794)
T ss_pred eeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC-cce
Confidence 4455678999999999999999999999999999999999999999999999999999999999755588899999 999
Q ss_pred ceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC--CccEEEecccccccc
Q 031924 83 SVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS--VLCFINSGFLSLNVN 148 (150)
Q Consensus 83 ~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~~~~v~ 148 (150)
-|-.++ +| +.+.+++++-|++|++|.+.+..+..++.+|+. +|+++.|-+ |..+|+||+.+..+.
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiK 210 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIK 210 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEE
Confidence 888887 44 778999999999999999988888899999988 799999987 446999999887664
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-22 Score=120.99 Aligned_cols=143 Identities=17% Similarity=0.186 Sum_probs=127.5
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
.|+-+|++.++++.|.+|++|+...+.++++..+|..+|..++.+.|+..|++++.|..+.+||+. .++...++.+ |.
T Consensus 24 ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~-TGkv~Rr~rg-H~ 101 (307)
T KOG0316|consen 24 RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN-TGKVDRRFRG-HL 101 (307)
T ss_pred EEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc-cCeeeeeccc-cc
Confidence 578899999999999999999999999999999999999999999999999999999999999995 6799999999 99
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccCC--eeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILPN--RIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
..|+.+. +.+...+++|+-|..+++||-++. ++++.+....+ .|.++..+ +..|++|+.+|++..
T Consensus 102 aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D-~V~Si~v~--~heIvaGS~DGtvRt 169 (307)
T KOG0316|consen 102 AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD-GVSSIDVA--EHEIVAGSVDGTVRT 169 (307)
T ss_pred ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC-ceeEEEec--ccEEEeeccCCcEEE
Confidence 9999998 667789999999999999998764 57888876666 58888765 566899999988763
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=133.64 Aligned_cols=146 Identities=13% Similarity=0.221 Sum_probs=123.0
Q ss_pred CeeecCc-ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc----------
Q 031924 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF---------- 69 (150)
Q Consensus 1 i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~---------- 69 (150)
+.|+|++ +.+++|+.|+.|+.||+++++.++....|-+.+..+.|-++|+++++.+.|+++++|+.+..
T Consensus 305 vkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~ 384 (503)
T KOG0282|consen 305 VKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPE 384 (503)
T ss_pred eecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchh
Confidence 3578887 78889999999999999999999888899999999999999999999999999999997643
Q ss_pred -----------------------------------cccccccccccccc---eeEeeecCCCEEEEecCCCcEEEEeccC
Q 031924 70 -----------------------------------KDCSDRFVGLSPNS---VDALLKLDEDRVITGSENGLISLVGILP 111 (150)
Q Consensus 70 -----------------------------------~~~~~~~~~~~~~~---v~~~~~~~~~~l~~~~~dg~i~~~d~~~ 111 (150)
....++|.+ |..+ +.+-++|+|++|++|..||.+.+||.++
T Consensus 385 ~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG-h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 385 MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG-HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc-eeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 011123444 4322 3333499999999999999999999999
Q ss_pred CeeeeeccCCCCcceeEEEEcCC-ccEEEecccccccc
Q 031924 112 NRIIQPIAEHSEYPIESLGIASV-LCFINSGFLSLNVN 148 (150)
Q Consensus 112 ~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~~~~v~ 148 (150)
.+.+..+++|.+ ++..+.|+|. ...+|+|+.+|.|.
T Consensus 464 ~kl~~~lkah~~-~ci~v~wHP~e~Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 464 TKLVSKLKAHDQ-PCIGVDWHPVEPSKVATCGWDGLIK 500 (503)
T ss_pred hhhhhccccCCc-ceEEEEecCCCcceeEecccCceeE
Confidence 999999999977 7999999995 46899999998875
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=120.00 Aligned_cols=141 Identities=16% Similarity=0.201 Sum_probs=118.0
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
.|-...+.|+++..|++||+||.++++.++.++. ..+|+++.++++|+++.++ +.+.|.+||.... ..++.++. +
T Consensus 150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf-~~lKs~k~--P 224 (334)
T KOG0278|consen 150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF-GLLKSYKM--P 224 (334)
T ss_pred EEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEe-cCceeEEeccccc-cceeeccC--c
Confidence 3556677888889999999999999988888764 6789999999999977665 6678999998655 44444443 4
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec-cCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
..|.+.. .|+...+++|+.|..++.||..++..+..+ ++|.+ ||.++.|+|||...|+||.+|.|.
T Consensus 225 ~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 225 CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIR 292 (334)
T ss_pred cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCC-ceEEEEECCCCceeeccCCCceEE
Confidence 5566666 888899999999999999999999988886 78888 899999999999999999999874
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=140.88 Aligned_cols=144 Identities=17% Similarity=0.220 Sum_probs=121.7
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCC---CeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccccccccc
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRK---NTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
.|+. +.++|++++..|.|.+||+.. .+.+..+..|+..++++.|++. -..|++|++||+|++||++.. +...++
T Consensus 94 kW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-~S~~t~ 172 (839)
T KOG0269|consen 94 KWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-KSKSTF 172 (839)
T ss_pred ccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc-cccccc
Confidence 4553 578999999999999999987 4556677889999999999986 567899999999999999854 566666
Q ss_pred ccccccceeEee-ec-CCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 77 VGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+ ....|..+. +| .++.++++...|.+++||++. .++...+.+|.+ +|.++.|+|++.+|||||.+..|+
T Consensus 173 ~~-nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-pV~c~nwhPnr~~lATGGRDK~vk 245 (839)
T KOG0269|consen 173 RS-NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-PVLCLNWHPNREWLATGGRDKMVK 245 (839)
T ss_pred cc-cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC-ceEEEeecCCCceeeecCCCccEE
Confidence 66 677787766 43 678999999999999999974 567788889999 799999999999999999987764
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-22 Score=131.39 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=116.3
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
.|-.||+++++|...|.|++||+.+...+..+..|+.++....|+|. ++.|++|+.|+.+++||+. .......+.+ |
T Consensus 75 ~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s-~a~v~~~l~~-h 152 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS-TAYVQAELSG-H 152 (487)
T ss_pred EeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC-CcEEEEEecC-C
Confidence 57789999999999999999997665567888999999999999996 5667889999999999986 3344446778 9
Q ss_pred ccceeEee-ec-CCCEEEEecCCCcEEEEeccCC-eeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 81 PNSVDALL-KL-DEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 81 ~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
++-|.|.. .| ++..+++|+.||.|++||++.. ..+..+ .|.. ||..+.+-|.|..+|+++.+
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~-pVe~vl~lpsgs~iasAgGn 217 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGC-PVESVLALPSGSLIASAGGN 217 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCC-ceeeEEEcCCCCEEEEcCCC
Confidence 99999987 44 5668999999999999999876 445555 5655 89999999999999988754
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-22 Score=137.05 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=123.6
Q ss_pred cceEEEEcCCCeEEEEEcCCCee-----e----eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTV-----Q----TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~-----~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
-.++++++.|.++++|++...+. . .....|...|++++++|+...+++|++|++.++|+++ .......+.
T Consensus 424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vLs 502 (775)
T KOG0319|consen 424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVLS 502 (775)
T ss_pred ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEEee
Confidence 35889999999999999987321 1 1234688899999999999999999999999999997 457888999
Q ss_pred cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+ |...+-++. ++..+.+++++.|++|++|.+.+..+++++.+|.. .|..+.|-.+|+.|+||+.+|.+.
T Consensus 503 G-H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~-aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 503 G-HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS-AVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred C-CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc-eeEeeeeeeCCcEEEeccCCCcEE
Confidence 9 999999998 88889999999999999999999999999999998 599999999999999999998764
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-22 Score=127.17 Aligned_cols=142 Identities=18% Similarity=0.213 Sum_probs=121.4
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc--ccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~ 79 (150)
.|++ ...+++++.|.+|+.||+++++....+.+ ...++++.++|...+|++|+.|..+++||.+..+ -..+++.+
T Consensus 267 ~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g- 343 (423)
T KOG0313|consen 267 VWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG- 343 (423)
T ss_pred EEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec-
Confidence 3555 66888999999999999999988776654 5678999999999999999999999999997654 34567889
Q ss_pred cccceeEee-ec-CCCEEEEecCCCcEEEEeccCCe-eeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KL-DEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|.+.|.++. +| +...|++++.|+++++||.++.+ ++..+..|.+ .|.++.|+. +.++++||.+.++.
T Consensus 344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D-Kvl~vdW~~-~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND-KVLSVDWNE-GGLIVSGGADNKLR 413 (423)
T ss_pred chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc-eEEEEeccC-CceEEeccCcceEE
Confidence 999999887 55 56789999999999999999877 8899999988 599999965 66899999987764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-22 Score=126.74 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=121.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeee--eeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc--c
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--F 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~ 76 (150)
+.|+|....|++++.|++|++||..+....+ +......+|.++.|+|.|.++++|....++++||+.+.+.-... -
T Consensus 178 l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred eeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc
Confidence 4799999999999999999999997643221 22234568999999999999999999999999999755321111 1
Q ss_pred ccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeecc-CCCCcceeEEEEcCCccEEEecccccccc
Q 031924 77 VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIA-EHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.. |...|+++. ++.+++.++++.||.|++||--+++++.++. +|.+..|.+..|..+|+|+.+.+.+..|.
T Consensus 258 ~q-ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vk 330 (430)
T KOG0640|consen 258 DQ-HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVK 330 (430)
T ss_pred cc-cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceee
Confidence 25 788899888 8899999999999999999999999998885 67666799999999999999999876553
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-21 Score=132.53 Aligned_cols=133 Identities=8% Similarity=0.036 Sum_probs=108.4
Q ss_pred EcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccc-------cccccccccccce
Q 031924 13 TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD-------CSDRFVGLSPNSV 84 (150)
Q Consensus 13 ~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~-------~~~~~~~~~~~~v 84 (150)
|+.++.+++|+......+..+.+|.+.|.+++|+|+ +..|++|+.|++|++||+...+. ....+.+ |...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcE
Confidence 345778999998777777888999999999999997 78999999999999999864322 2234567 88899
Q ss_pred eEee-ecCCCE-EEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 85 DALL-KLDEDR-VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 85 ~~~~-~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.++. +|++.. +++++.|+.|++||+++++....+. |.. .|.+++|+|+|.+|++++.++.|.
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~-~V~SlswspdG~lLat~s~D~~Ir 192 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPK-KLSSLKWNIKGNLLSGTCVGKHMH 192 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCC-cEEEEEECCCCCEEEEEecCCEEE
Confidence 9888 777765 5788999999999999888766664 445 599999999999999988776553
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=130.04 Aligned_cols=143 Identities=17% Similarity=0.238 Sum_probs=123.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
|.|+.|...+++|+.||.|++|.+++|.+++++. .|...|+|+.|+.|+..+.+++.|.++++.-+. .+++++.|.+
T Consensus 269 i~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LKEfrG- 346 (508)
T KOG0275|consen 269 ISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLKEFRG- 346 (508)
T ss_pred EeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHHHhcC-
Confidence 4688999999999999999999999999998887 788999999999999999999999999999985 6799999999
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCC-CCcceeEEEEcCCc-cEEEeccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEH-SEYPIESLGIASVL-CFINSGFLSL 145 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~~l~s~~~~~ 145 (150)
|..-|+... .++|..+++++.||+|++|+.++.+++.+++.. .+.+|.++..-|.. ..++.|..+.
T Consensus 347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn 415 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN 415 (508)
T ss_pred ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC
Confidence 999888766 889999999999999999999999998888543 34578888877743 4555554443
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=119.93 Aligned_cols=145 Identities=19% Similarity=0.229 Sum_probs=115.6
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeee---------------------------------------------------
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQT--------------------------------------------------- 31 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--------------------------------------------------- 31 (150)
.+.+.+.+++|+.|.++++||+++|+.+.
T Consensus 60 id~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 60 IDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred ecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 45567899999999999999998876432
Q ss_pred --eeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEe
Q 031924 32 --RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVG 108 (150)
Q Consensus 32 --~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d 108 (150)
.+..+++.++.+.|.|-+++|++|..||.|..||.++..+.+..... |...|+.+. +++..++++++.|.+-++||
T Consensus 140 ~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~-h~~~Ind~q~s~d~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE-HSSKINDLQFSRDRTYFITGSKDTTAKLVD 218 (327)
T ss_pred eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh-hccccccccccCCcceEEecccCccceeee
Confidence 12233456778889999999999999999999999755466666666 888999998 89999999999999999999
Q ss_pred ccCCeeeee-------------------------------------------------------ccCCCCcceeEEEEcC
Q 031924 109 ILPNRIIQP-------------------------------------------------------IAEHSEYPIESLGIAS 133 (150)
Q Consensus 109 ~~~~~~~~~-------------------------------------------------------~~~~~~~~i~~~~~~~ 133 (150)
.++-+++++ ++.|-+ ||++++|+|
T Consensus 219 ~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhP 297 (327)
T KOG0643|consen 219 VRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHP 297 (327)
T ss_pred ccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECC
Confidence 765433322 235556 799999999
Q ss_pred CccEEEeccccccccC
Q 031924 134 VLCFINSGFLSLNVNP 149 (150)
Q Consensus 134 ~~~~l~s~~~~~~v~~ 149 (150)
+|+..++|+-++.|+.
T Consensus 298 dGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 298 DGKSYSSGGEDGYVRL 313 (327)
T ss_pred CCcccccCCCCceEEE
Confidence 9999999999988763
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=126.89 Aligned_cols=147 Identities=13% Similarity=0.128 Sum_probs=120.1
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCCe-------eeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccc-cc
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNT-------VQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGY-FK 70 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~-~~ 70 (150)
+.|++. .-.+++++.|++|.+||+.... +...+.+|++.|..++|++- ...|++++.|+.+.|||.+. ..
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 467774 4478899999999999997642 23567799999999999995 56678899999999999985 22
Q ss_pred ccccccccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCC-eeeeeccCCCCcceeEEEEcCC-ccEEEecccccc
Q 031924 71 DCSDRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLGIASV-LCFINSGFLSLN 146 (150)
Q Consensus 71 ~~~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~~~~ 146 (150)
+......+ |...+.|+. +| ++..|++|+.|++|.+||+++- +.+..+..|.+ .|.++.|+|. ...||+++.++.
T Consensus 263 ~~~~~~~a-h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~r 340 (422)
T KOG0264|consen 263 KPSHSVKA-HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRR 340 (422)
T ss_pred CCcccccc-cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCc
Confidence 44455567 999999998 44 7889999999999999999874 47888999999 5999999995 468999998887
Q ss_pred ccC
Q 031924 147 VNP 149 (150)
Q Consensus 147 v~~ 149 (150)
+++
T Consensus 341 l~v 343 (422)
T KOG0264|consen 341 LNV 343 (422)
T ss_pred EEE
Confidence 653
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-21 Score=136.56 Aligned_cols=145 Identities=14% Similarity=0.189 Sum_probs=127.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|...++++|+.|-+|++|+..+.+++.++.+|.+.|..+.|++.-.++++++.|.+|+||++. ..+++..+.| |
T Consensus 57 v~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-sr~~iavltG-H 134 (1202)
T KOG0292|consen 57 VDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-SRKCIAVLTG-H 134 (1202)
T ss_pred eeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc-CCceEEEEec-C
Confidence 5799999999999999999999999999999999999999999999999999999999999999995 5689999999 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccC--------C-------------------e--eeeeccCCCCcceeEEE
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILP--------N-------------------R--IIQPIAEHSEYPIESLG 130 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~--------~-------------------~--~~~~~~~~~~~~i~~~~ 130 (150)
..-|-|.. .|...++++++-|-+||+||+.. + . ..+.+.+|.. +|+-++
T Consensus 135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaA 213 (1202)
T KOG0292|consen 135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAA 213 (1202)
T ss_pred ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEE
Confidence 88888777 78899999999999999999842 1 0 1123456655 699999
Q ss_pred EcCCccEEEecccccccc
Q 031924 131 IASVLCFINSGFLSLNVN 148 (150)
Q Consensus 131 ~~~~~~~l~s~~~~~~v~ 148 (150)
|+|.-.+++||+.+-.|.
T Consensus 214 fhpTlpliVSG~DDRqVK 231 (1202)
T KOG0292|consen 214 FHPTLPLIVSGADDRQVK 231 (1202)
T ss_pred ecCCcceEEecCCcceee
Confidence 999999999999876653
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-23 Score=141.42 Aligned_cols=145 Identities=20% Similarity=0.295 Sum_probs=133.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.|+++..+|+.|+.+|+|++||++..+.++.+.+|...+.++.|+|-+.+++.|+.|+.+.+||.+. .-+...+.+ |
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s-~ 153 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKS-H 153 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc-cCceeeecC-C
Confidence 46788889999999999999999999999999999999999999999999999999999999999873 467888888 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.++. .|+|+++++++.|..+++||...++.+..|..|++ .+..+.|+|..-++++|+.+..|.
T Consensus 154 ~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 154 TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred cceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceee
Confidence 88888887 99999999999999999999999999999999999 699999999999999999887654
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=116.94 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=120.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-----------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----------- 69 (150)
|.|+.+|.+|++++.|.+..+|-...|+.+....+|.+.|.|+..+-+.+.+++|+.|.++++||+...
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~ 95 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSP 95 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCe
Confidence 467889999999999999999999899999999999999999999999999999999999999998643
Q ss_pred -----------------------------------------cccccccccccccceeEee-ecCCCEEEEecCCCcEEEE
Q 031924 70 -----------------------------------------KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLV 107 (150)
Q Consensus 70 -----------------------------------------~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~ 107 (150)
..+...++. +...++... .+-++.|++|..||.|..|
T Consensus 96 Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t-~~skit~a~Wg~l~~~ii~Ghe~G~is~~ 174 (327)
T KOG0643|consen 96 VKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT-PDSKITSALWGPLGETIIAGHEDGSISIY 174 (327)
T ss_pred eEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC-CccceeeeeecccCCEEEEecCCCcEEEE
Confidence 011222233 344455443 7788899999999999999
Q ss_pred eccCCe-eeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 108 GILPNR-IIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 108 d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
|+++++ .+.....|.. .|+.++++||..++++++-+..
T Consensus 175 da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dtt 213 (327)
T KOG0643|consen 175 DARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTT 213 (327)
T ss_pred EcccCceeeechhhhcc-ccccccccCCcceEEecccCcc
Confidence 999975 5666678877 6999999999999999997654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.3e-21 Score=135.34 Aligned_cols=147 Identities=14% Similarity=0.105 Sum_probs=122.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-----------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----------- 69 (150)
++|+|++.++++++.|++|.+|+..+.+.+..+.+|.+.|..+.|.|-|++|++-+.|++|++|+...+
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~ 214 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE 214 (942)
T ss_pred eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh
Confidence 579999999999999999999999999999999999999999999999999999999999999996432
Q ss_pred --------------------------------------c--ccccccccccccceeEee-ec-----CCC----------
Q 031924 70 --------------------------------------K--DCSDRFVGLSPNSVDALL-KL-----DED---------- 93 (150)
Q Consensus 70 --------------------------------------~--~~~~~~~~~~~~~v~~~~-~~-----~~~---------- 93 (150)
+ +....+.| |..++.++. +| +..
T Consensus 215 ~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG-H~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG-HSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec-CCCceEEEEeChHHhccccccCCccCCCcc
Confidence 0 11223557 888888765 33 111
Q ss_pred --EEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 94 --RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 94 --~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+++|+.|+.|.+|.....+++..+..-...+|..++|+|||..|..||.+|+|-
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~ 350 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVA 350 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEE
Confidence 6788999999999998777776665443444799999999999999999999885
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=119.13 Aligned_cols=117 Identities=14% Similarity=0.176 Sum_probs=95.0
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCC-Ceee-eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRK-NTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
++||| ...++++++-|++||+|+++. +... +....+.+++.+++|+.+|..+++|+.|+.+++||+.. + +...+.
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S-~-Q~~~v~ 110 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS-G-QVSQVA 110 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC-C-Ceeeee
Confidence 57999 556676889999999999987 3333 44457889999999999999999999999999999963 3 455566
Q ss_pred cccccceeEeee-c--CCCEEEEecCCCcEEEEeccCCeeeeeccC
Q 031924 78 GLSPNSVDALLK-L--DEDRVITGSENGLISLVGILPNRIIQPIAE 120 (150)
Q Consensus 78 ~~~~~~v~~~~~-~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 120 (150)
. |..+|.++.. + .-..|++|+.|.++++||++...++.++..
T Consensus 111 ~-Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L 155 (347)
T KOG0647|consen 111 A-HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL 155 (347)
T ss_pred e-cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec
Confidence 6 9999998762 2 335899999999999999998877777643
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=115.95 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=124.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.|+.++..++...+.|+|.|.....-+++..++.|.....|+.|+|+|++|++|+.|..+.+||+.+. -+.+.+.- +
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~isR-l 230 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCISR-L 230 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-hhheeecc-c
Confidence 367777788888888999999999998899999999999999999999999999999999999999633 66677777 8
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
..+|..+. +.+|++|+++++|..|-+=+.++|..+..+ .+++ +-..++|+|...+||-++.+-
T Consensus 231 dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI-~~~~-~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 231 DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI-PCEG-PTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred cCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe-eccC-CceeEEecCCCceeeEEecCC
Confidence 89999998 889999999999999999999999988888 4556 688999999999999877643
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.8e-21 Score=128.97 Aligned_cols=141 Identities=15% Similarity=0.209 Sum_probs=125.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc-CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
+.|+++|.+|++|..+|.|.|||....+.+..+.. |...|-+++|. +..+.+|+.++.|..+|++........+.+
T Consensus 223 v~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~- 299 (484)
T KOG0305|consen 223 VKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQG- 299 (484)
T ss_pred EEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhc-
Confidence 46899999999999999999999999888888887 89999999998 677899999999999999866555555778
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC-CccEEEeccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS-VLCFINSGFLSL 145 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~ 145 (150)
|...|..+. +++++++++|+.|+.+.+||....++...+..|.. .|..++|+| ...+||+|+.+.
T Consensus 300 H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a-AVKA~awcP~q~~lLAsGGGs~ 366 (484)
T KOG0305|consen 300 HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTA-AVKALAWCPWQSGLLATGGGSA 366 (484)
T ss_pred ccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccce-eeeEeeeCCCccCceEEcCCCc
Confidence 999998888 89999999999999999999988888888889988 599999999 678999988754
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-21 Score=134.23 Aligned_cols=115 Identities=10% Similarity=0.134 Sum_probs=99.2
Q ss_pred eeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc----------------------------------------
Q 031924 31 TRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF---------------------------------------- 69 (150)
Q Consensus 31 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~---------------------------------------- 69 (150)
+.+. .|.+.|.++.|++||++||+|+.|+.|+||.+...
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4455 88999999999999999999999999999987540
Q ss_pred -------------------cccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEE
Q 031924 70 -------------------KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLG 130 (150)
Q Consensus 70 -------------------~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~ 130 (150)
.+.+..|.| |...|..+.....++|++++.|.+||+|++...++++.| .|.++ |+|++
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~G-Ht~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~Hndf-VTcVa 416 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKG-HTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDF-VTCVA 416 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhc-cchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCe-eEEEE
Confidence 223345567 777788887677789999999999999999999999999 88898 99999
Q ss_pred EcC-CccEEEecccccccc
Q 031924 131 IAS-VLCFINSGFLSLNVN 148 (150)
Q Consensus 131 ~~~-~~~~l~s~~~~~~v~ 148 (150)
|+| |.+|+++|++++.|.
T Consensus 417 FnPvDDryFiSGSLD~KvR 435 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVR 435 (712)
T ss_pred ecccCCCcEeecccccceE
Confidence 999 889999999999874
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=118.74 Aligned_cols=144 Identities=13% Similarity=0.200 Sum_probs=119.9
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCC------------C------eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEE
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRK------------N------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 63 (150)
+|+|||.++++|+.|..|+|+|++. + ..++.+..|.++|+++.|+|....|++|+.|+++++
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL 198 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence 6999999999999999999999872 1 145678889999999999999999999999999999
Q ss_pred EEccccc--ccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec---cCCCCcceeEEEEcCCccE
Q 031924 64 YSWGYFK--DCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLGIASVLCF 137 (150)
Q Consensus 64 ~~~~~~~--~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~ 137 (150)
||+.... +..+.|. ...++.++. .|.|.+++.|.....+++||+.+.++.-.- ..|.+ .|+++.+++.|++
T Consensus 199 FDfsK~saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~-ai~~V~Ys~t~~l 275 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG-AITQVRYSSTGSL 275 (430)
T ss_pred EecccHHHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc-ceeEEEecCCccE
Confidence 9985321 2222333 356788888 899999999999999999999988764432 35666 6999999999999
Q ss_pred EEecccccccc
Q 031924 138 INSGFLSLNVN 148 (150)
Q Consensus 138 l~s~~~~~~v~ 148 (150)
.++|+-+|.|.
T Consensus 276 YvTaSkDG~Ik 286 (430)
T KOG0640|consen 276 YVTASKDGAIK 286 (430)
T ss_pred EEEeccCCcEE
Confidence 99999999875
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=128.08 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=124.3
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCee--e--------eeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccc
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTV--Q--------TRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~--~--------~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 72 (150)
-++..++++|+-|+.|.+||++++.. + ..+. ++..++.+++.++.|..+++|+..+-+++||.+.. +.
T Consensus 127 ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~-~k 205 (735)
T KOG0308|consen 127 AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC-KK 205 (735)
T ss_pred ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc-cc
Confidence 45778899999999999999997621 1 2223 67789999999999999999999999999998744 55
Q ss_pred ccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 73 SDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+-++.+ |...|.++. +.+|..++++++||+|++||+.-.+++.++..|.+ .+.++..+|+-..+.+|+.+++|.
T Consensus 206 imkLrG-HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~ 280 (735)
T KOG0308|consen 206 IMKLRG-HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIY 280 (735)
T ss_pred eeeeec-cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEE
Confidence 556679 999999998 89999999999999999999999999999999988 699999999999999999999874
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=123.09 Aligned_cols=147 Identities=18% Similarity=0.244 Sum_probs=120.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-----------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----------- 69 (150)
++.++|+++|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|+++++|++...
T Consensus 208 ~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred EEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence 478999999999999999999999999989889999999999999888888999999999999987532
Q ss_pred -----------------------------cccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeecc-
Q 031924 70 -----------------------------KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIA- 119 (150)
Q Consensus 70 -----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~- 119 (150)
....-.+.+ +...+.|++..+...+++|+.||.|.+|++...+++.+..
T Consensus 288 ~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg-~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 288 GVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRG-GEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred ceeeechhcccceEEeccccceeEEEeccccceeeeeC-CCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeec
Confidence 001112335 6667778888888999999999999999998888766543
Q ss_pred CCCC----------cceeEEEEcCCccEEEecccccccc
Q 031924 120 EHSE----------YPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 120 ~~~~----------~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+|.- +-|++++..|...++|+|+.++.|.
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vr 405 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVR 405 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceE
Confidence 2221 1388999999999999999988875
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-21 Score=123.12 Aligned_cols=145 Identities=10% Similarity=0.090 Sum_probs=111.2
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCCeee---eeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccccccc
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQ---TRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
++|||- .-.+++|.--+.|++|...++.-. .-+.+|+..|..++|+|. ...|++++.||+|+|||++...+....
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 478883 335777877789999999887532 345579999999999996 567899999999999999855322222
Q ss_pred -cccccccceeEee-ecCCCEEEEecCCCcEEEEeccC---CeeeeeccCCCCcceeEEEEcCC-ccEEEeccccccc
Q 031924 76 -FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILP---NRIIQPIAEHSEYPIESLGIASV-LCFINSGFLSLNV 147 (150)
Q Consensus 76 -~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~---~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~~~~v 147 (150)
.+. |..-|+.+. +.+..+|++|+.||++++||++. ++++..++.|.. ||+++.|+|. ...|+.++.+..|
T Consensus 297 ~~kA-h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 297 STKA-HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred Eeec-cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcE
Confidence 245 888899888 55556899999999999999975 567788888988 8999999984 3455555555443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=122.38 Aligned_cols=143 Identities=13% Similarity=0.119 Sum_probs=116.8
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcC--CCeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccccccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
++|+| ...++++++.|+.+.|||.+ +.++....++|...++|++|+|- +..|++|+.|++|.+||+|...+...++
T Consensus 233 V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~ 312 (422)
T KOG0264|consen 233 VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF 312 (422)
T ss_pred hhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec
Confidence 46777 45678888999999999999 55566778899999999999995 5667899999999999999888888999
Q ss_pred ccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCC--------------eeeeeccCCCCcceeEEEEcCCccE-EE
Q 031924 77 VGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPN--------------RIIQPIAEHSEYPIESLGIASVLCF-IN 139 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~-l~ 139 (150)
.+ |...|..+- +| ....|++++.|+.+.+||+..- +++....+|.. .|..+.|+|...+ ++
T Consensus 313 e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~ 390 (422)
T KOG0264|consen 313 EG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIA 390 (422)
T ss_pred cC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEE
Confidence 99 999999987 55 5678899999999999998531 13455667877 5999999997754 66
Q ss_pred eccccc
Q 031924 140 SGFLSL 145 (150)
Q Consensus 140 s~~~~~ 145 (150)
|.+-+.
T Consensus 391 SvaeDN 396 (422)
T KOG0264|consen 391 SVAEDN 396 (422)
T ss_pred EecCCc
Confidence 665553
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=114.57 Aligned_cols=142 Identities=13% Similarity=0.100 Sum_probs=121.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC--CCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~~ 78 (150)
|.|+++|..+++++.|.++++||...++..+.+..++..+..++|-.....++.++. |.+|+..++. ..+.++-|.|
T Consensus 20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~-dNkylRYF~G 98 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH-DNKYLRYFPG 98 (311)
T ss_pred EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee-cCceEEEcCC
Confidence 578999999999999999999999999999999988888999999887777777765 8899999986 4588899999
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
|...|..+. +|.++.+++++.|++|++||++..++...+... +-..++|+|+|-++|.+..+..|
T Consensus 99 -H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~---~~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 99 -HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS---GRPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred -CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC---CCcceeECCCCcEEEEecCCCeE
Confidence 999999998 888899999999999999999977776665332 23347999999999998876443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-20 Score=119.72 Aligned_cols=144 Identities=10% Similarity=0.199 Sum_probs=108.2
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc--ccccc
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDR 75 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~ 75 (150)
++|||. ...|++|+.|++|+|||++.+. .-...+.|.+.|+.+.|+.+..+|++|+.||+++|||++... +.+.+
T Consensus 263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~ 342 (440)
T KOG0302|consen 263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT 342 (440)
T ss_pred hccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee
Confidence 578995 5688899999999999999873 222337899999999999998899999999999999998543 56778
Q ss_pred cccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCe--------eee--------eccCCCC-cceeEEEEcCCc-
Q 031924 76 FVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNR--------IIQ--------PIAEHSE-YPIESLGIASVL- 135 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~--------~~~--------~~~~~~~-~~i~~~~~~~~~- 135 (150)
|+- |..+|+++. +| +...|++++.|.+|.+||+.-.. ... .+-.|.+ .-+..+.|+++-
T Consensus 343 fk~-Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiP 421 (440)
T KOG0302|consen 343 FKY-HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIP 421 (440)
T ss_pred EEe-ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCC
Confidence 888 999999998 44 56788899999999999984211 011 1112211 127778899854
Q ss_pred cEEEeccccc
Q 031924 136 CFINSGFLSL 145 (150)
Q Consensus 136 ~~l~s~~~~~ 145 (150)
-++++.+.+|
T Consensus 422 G~lvsTa~dG 431 (440)
T KOG0302|consen 422 GLLVSTAIDG 431 (440)
T ss_pred CeEEEecccc
Confidence 3566655554
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-20 Score=117.19 Aligned_cols=134 Identities=10% Similarity=0.111 Sum_probs=114.1
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCC--EEEeecCCCeEEEEEcccccccccccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 83 (150)
++.++++|+.|-+|+|||+++.+.+..+..|.+.++++.|.+.-. .|++|+.||.|.+|+...+ .+...+++ |...
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~-H~~~ 129 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKA-HKGQ 129 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecc-cccc
Confidence 688999999999999999999988888889999999999998754 8999999999999999766 88889999 9999
Q ss_pred eeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 84 VDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
|+.+. +|.+++-++.+.|+.++.||+-.++.-....-... .+.+.|+|.|.+++.++.
T Consensus 130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred cceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEEEEEec
Confidence 99998 99999999999999999999988774444322212 445899999996665543
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=126.04 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=121.7
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccccee
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 85 (150)
.+.++++|+.|.++++||..++++...+.+|.+.+.++... ...+++|+.|.+|++|++. .+..+..+.+ |..+|.
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~-n~~~l~l~~~-h~~~V~ 335 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT-NGACLNLLRG-HTGPVN 335 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc-CcceEEEecc-ccccEE
Confidence 47899999999999999999999999999999999998764 4567889999999999996 5688889988 999999
Q ss_pred EeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
++... +.++++|+.|+.|++||+.+++++..+.+|.. .|.++.+.+. ..+.+|+.+..|.
T Consensus 336 ~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~Ik 395 (537)
T KOG0274|consen 336 CVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIK 395 (537)
T ss_pred EEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceE
Confidence 98733 88999999999999999999999999999999 5999988776 8999999987664
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-19 Score=109.59 Aligned_cols=146 Identities=16% Similarity=0.254 Sum_probs=109.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee-----eeeccCCCcEEEEEEE-----------------------------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ-----TRSEFSEEELTSVVLM----------------------------- 46 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~v~~~~~~----------------------------- 46 (150)
.+|+|.|++|++|+.|++|++...+...+. ..+.-|.+.|..++|.
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 379999999999999999998754332111 1222233333333332
Q ss_pred -----------------eCCCEEEeecCCCeEEEEEcccccccccccc----c--ccccceeEee-ecCCCEEEEecCCC
Q 031924 47 -----------------KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV----G--LSPNSVDALL-KLDEDRVITGSENG 102 (150)
Q Consensus 47 -----------------~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~----~--~~~~~v~~~~-~~~~~~l~~~~~dg 102 (150)
=+|-.+++|++|.+|++||++.. .++..+. + .....|.+++ .|.|+++++|..|.
T Consensus 175 ~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 175 GFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred cceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 24557899999999999999743 3443332 1 0125566776 89999999999999
Q ss_pred cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 103 LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 103 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+||++.++.++.+..|.. .|.++.|+|...|+.+|+.++.|.
T Consensus 254 sc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ik 298 (350)
T KOG0641|consen 254 SCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIK 298 (350)
T ss_pred ceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEE
Confidence 999999999999999999988 599999999999999999998875
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=121.34 Aligned_cols=136 Identities=14% Similarity=0.171 Sum_probs=107.5
Q ss_pred cCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccc--
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN-- 82 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-- 82 (150)
.|...+++|..|++|++||..+..+...+.+|.+.|.|+.|. .+.+++|+.|.++++||+. .++++.++.+ |.+
T Consensus 205 YDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~-tge~l~tlih-HceaV 280 (499)
T KOG0281|consen 205 YDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN-TGEPLNTLIH-HCEAV 280 (499)
T ss_pred ecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEecc-CCchhhHHhh-hccee
Confidence 366789999999999999999988899999999999999885 5689999999999999996 3444444433 333
Q ss_pred -----------------------------------------ceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCC
Q 031924 83 -----------------------------------------SVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (150)
Q Consensus 83 -----------------------------------------~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 121 (150)
.|..+ ..+.+++++++.|.+|++|++.+++.++++.+|
T Consensus 281 Lhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV-dfd~kyIVsASgDRTikvW~~st~efvRtl~gH 359 (499)
T KOG0281|consen 281 LHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV-DFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGH 359 (499)
T ss_pred EEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee-ccccceEEEecCCceEEEEeccceeeehhhhcc
Confidence 33222 223458889999999999999999999999888
Q ss_pred CCcceeEEEEcCCccEEEecccccccc
Q 031924 122 SEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 122 ~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.. +|-++.+ .++++++|+.+..|.
T Consensus 360 kR-GIAClQY--r~rlvVSGSSDntIR 383 (499)
T KOG0281|consen 360 KR-GIACLQY--RDRLVVSGSSDNTIR 383 (499)
T ss_pred cc-cceehhc--cCeEEEecCCCceEE
Confidence 77 5766654 688999999887764
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.3e-20 Score=124.05 Aligned_cols=144 Identities=9% Similarity=0.079 Sum_probs=122.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC-CCEEEeec--CCCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGS--QSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~ 77 (150)
+.|++|++++++|+.|+.+.|||....++...+..|...|.+++|+|- ...||+|+ .|+.|++||.. .+..+..+.
T Consensus 307 Lkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~-~g~~i~~vd 385 (484)
T KOG0305|consen 307 LKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN-TGARIDSVD 385 (484)
T ss_pred eEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC-CCcEecccc
Confidence 579999999999999999999999887788889999999999999995 66777764 79999999986 456666654
Q ss_pred cccccceeEee-ecCCCEEEEe--cCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITG--SENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~--~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
. ...|..+. ++..+.|+++ ..++.|.+|+..+.+.+..+.+|.. .|..++++|||..+++|+.+-+++
T Consensus 386 t--gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlr 456 (484)
T KOG0305|consen 386 T--GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLR 456 (484)
T ss_pred c--CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEE
Confidence 3 56788877 6766666554 3567999999999889999999988 699999999999999999988764
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-21 Score=123.14 Aligned_cols=146 Identities=11% Similarity=0.070 Sum_probs=121.2
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
+.|+|- ...|+++..|+.|.+||+++..+++.+. .....+.++|+|.+-.|++++.|..++.||++.....+....+
T Consensus 193 vkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d- 270 (433)
T KOG0268|consen 193 VKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD- 270 (433)
T ss_pred EecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcc-
Confidence 357774 4567777799999999999998876654 2456689999998888999999999999999877788888888
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|.+.+..+. +|.|+.+++|+.|.+|++|....+..-..+....-+.|.++.||.|.+|+++||.++||.
T Consensus 271 hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 271 HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCccee
Confidence 999999888 999999999999999999998776654433221223599999999999999999999986
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=119.09 Aligned_cols=144 Identities=16% Similarity=0.182 Sum_probs=123.4
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc-cc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LS 80 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-~~ 80 (150)
.|+|+...+++++.|..|++|..........+..|+++|+.+..+|.|.||++++.|++.-+.|.+. +..+..... ..
T Consensus 268 ~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~-g~~lt~vs~~~s 346 (506)
T KOG0289|consen 268 KFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS-GSQLTVVSDETS 346 (506)
T ss_pred EeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccC-CcEEEEEeeccc
Confidence 5788888999999999999999988777777889999999999999999999999999999999864 444433321 02
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
.-.+++.. +|||.++.+|..||.+++||+.++.....|..|.+ +|..++|+.+|-+||+++.++.|
T Consensus 347 ~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V 413 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSV 413 (506)
T ss_pred cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeE
Confidence 23356666 89999999999999999999999989999999998 79999999999999999988754
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-20 Score=125.61 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=122.5
Q ss_pred cCcceEEEEcCCCeEEEEEcCCC--eeeeeeccCCCcEEEEEE-EeCCCEEEeecCCCeEEEEEcccccc-cc-------
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVL-MKNGRKVVCGSQSGTVLLYSWGYFKD-CS------- 73 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~i~~~~~~~~-~~------- 73 (150)
.+++.+++++.|-+|++|+...+ -+...+..|.+.|.|+++ .++...+++|+.|+.|.+||+..... ..
T Consensus 83 ~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 83 GNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred cCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 46789999999999999999887 356778899999999999 77888999999999999999963211 11
Q ss_pred -cccc-cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 74 -DRFV-GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 74 -~~~~-~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
.... + +..++++++ .+.+..+++|+..+.+++||.++++.+..+.+|.+. |..+..++||+.++++|.++.|+.
T Consensus 163 ~~sl~sG-~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdN-Vr~ll~~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 163 VNSLGSG-PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDN-VRVLLVNDDGTRLLSASSDGTIRL 239 (735)
T ss_pred cccCCCC-CccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccc-eEEEEEcCCCCeEeecCCCceEEe
Confidence 2222 6 778899988 778889999999999999999999988888899995 999999999999999999998864
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=118.94 Aligned_cols=144 Identities=13% Similarity=0.085 Sum_probs=117.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCC---eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
+.||++|++||+++.|.+.-+|++... +..+++.+|..+|..+.|+||.+++++++.+..+.+||.. .+.....++
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~-tgd~~~~y~ 308 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD-TGDLRHLYP 308 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCC-cchhhhhcc
Confidence 468999999999999999999987654 3467888999999999999999999999999999999986 456666665
Q ss_pred cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
..+...+.+++ .|+|..+++|+.|+.+..||+. +..+..+.+-....|.+++..+||+++.+.+.+-.
T Consensus 309 ~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~ 377 (519)
T KOG0293|consen 309 SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKK 377 (519)
T ss_pred cCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccc
Confidence 31446666666 9999999999999999999994 55556665544445999999999999887665543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=126.39 Aligned_cols=145 Identities=16% Similarity=0.178 Sum_probs=123.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC-----C---eee----eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK-----N---TVQ----TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~-----~---~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 68 (150)
|+.+||++.+++++.|++|++||..- + +.+ .+...-++.+.|+.+||||++|+++-.|.++++|-+++
T Consensus 460 i~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt 539 (888)
T KOG0306|consen 460 ISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT 539 (888)
T ss_pred eeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc
Confidence 45689999999999999999999642 1 111 11122357899999999999999999999999999864
Q ss_pred ccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 69 FKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
. +..-.+-| |.-+|.|+. +|+++++++|+.|..|++|-+.-|.+.+.+-+|.+ +|.++.|-|+...+.++|-++.|
T Consensus 540 l-KFflsLYG-HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD-Svm~V~F~P~~~~FFt~gKD~kv 616 (888)
T KOG0306|consen 540 L-KFFLSLYG-HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD-SVMSVQFLPKTHLFFTCGKDGKV 616 (888)
T ss_pred e-eeeeeecc-cccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC-ceeEEEEcccceeEEEecCcceE
Confidence 4 44445568 999999999 99999999999999999999999999999999999 69999999999999999988876
Q ss_pred c
Q 031924 148 N 148 (150)
Q Consensus 148 ~ 148 (150)
.
T Consensus 617 K 617 (888)
T KOG0306|consen 617 K 617 (888)
T ss_pred E
Confidence 4
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-19 Score=125.29 Aligned_cols=141 Identities=14% Similarity=0.182 Sum_probs=121.3
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeee---ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc---------
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--------- 69 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~--------- 69 (150)
+.++-|++.+.|...|+|-+|++++|-....+ ..|.++|++++....++.+++++.+|.+.+||+...
T Consensus 455 ~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~ 534 (910)
T KOG1539|consen 455 CVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG 534 (910)
T ss_pred EEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC
Confidence 45677899999999999999999998655555 478999999999988999999999999999998543
Q ss_pred -------------------------------cccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeee
Q 031924 70 -------------------------------KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQP 117 (150)
Q Consensus 70 -------------------------------~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 117 (150)
.+..+.|.+ |.+.++.+. +++|+++++++.|++|++||+.++.++--
T Consensus 535 ~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g-h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 535 SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG-HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc-cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee
Confidence 244566778 999999998 99999999999999999999999998877
Q ss_pred ccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 118 IAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 118 ~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
+.- .. +..++.|+|+|.+||+...+.
T Consensus 614 ~~v-d~-~~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 614 LLV-DS-PCTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred Eec-CC-cceeeEECCCCCEEEEEEecC
Confidence 633 23 799999999999999987763
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=119.79 Aligned_cols=144 Identities=16% Similarity=0.186 Sum_probs=118.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCee--eeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++++|++..++.|+.|+.|++|.+..... ......|.+++++++|+||+.+|+++...+.+.+||..........+.-
T Consensus 449 vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~F 528 (603)
T KOG0318|consen 449 VAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAF 528 (603)
T ss_pred EEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeee
Confidence 47899999999999999999999988653 3456688999999999999999999999999999998654344445556
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
|...|.++. +|++.++++|+.|..|.+|++.. .+.+....+|.. .|+.+.|-.+..+ ++.+.+-+|
T Consensus 529 -HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~-gVn~v~wlde~tv-vSsG~Da~i 596 (603)
T KOG0318|consen 529 -HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLG-GVNSVAWLDESTV-VSSGQDANI 596 (603)
T ss_pred -eeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccccc-CceeEEEecCceE-EeccCccee
Confidence 999999998 99999999999999999999864 444555568888 6999999776654 555555544
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=113.42 Aligned_cols=138 Identities=12% Similarity=0.136 Sum_probs=111.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCC--EEEeecCCCeEEEEEcccc---------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQSGTVLLYSWGYF--------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~~~~~~--------- 69 (150)
++|+.||..+++++.|+.+++||+.++ ....+..|.++|.++.|-+... .|++|+.|++|+.||.+..
T Consensus 78 v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP 156 (347)
T KOG0647|consen 78 VCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP 156 (347)
T ss_pred EEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc
Confidence 479999999999999999999999999 4556778999999999998755 8999999999999998753
Q ss_pred -------------------------------------------------------------------------c--cccc
Q 031924 70 -------------------------------------------------------------------------K--DCSD 74 (150)
Q Consensus 70 -------------------------------------------------------------------------~--~~~~ 74 (150)
. +...
T Consensus 157 eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 157 ERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred ceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce
Confidence 1 1112
Q ss_pred cccccccc---------ceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 75 RFVGLSPN---------SVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 75 ~~~~~~~~---------~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
+|+. |.. .|..+. +|....|++.++||++.+||-.....+...+.|.. ||++.+|+.+|.++|-+
T Consensus 237 tFkC-HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q-pItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 237 TFKC-HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ-PITCCSFNRNGSIFAYA 311 (347)
T ss_pred eEEE-eccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC-ccceeEecCCCCEEEEE
Confidence 2333 331 233455 66777999999999999999887777788777877 89999999999998854
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-19 Score=111.80 Aligned_cols=143 Identities=17% Similarity=0.238 Sum_probs=113.6
Q ss_pred eecCcceEEEEc--CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-----------
Q 031924 3 FAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (150)
Q Consensus 3 ~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----------- 69 (150)
|-...+.++.++ .|.+|+..++.+.+.++.+.+|...|++++.+|-+..+++++.|++|++||++..
T Consensus 64 Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~ 143 (311)
T KOG1446|consen 64 FTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR 143 (311)
T ss_pred EecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC
Confidence 433344444444 4899999999999999999999999999999999999999999999999999743
Q ss_pred ---------------------------------------------------------------------------ccccc
Q 031924 70 ---------------------------------------------------------------------------KDCSD 74 (150)
Q Consensus 70 ---------------------------------------------------------------------------~~~~~ 74 (150)
|...+
T Consensus 144 pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~ 223 (311)
T KOG1446|consen 144 PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS 223 (311)
T ss_pred cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee
Confidence 22333
Q ss_pred cccccccc----ceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 75 RFVGLSPN----SVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 75 ~~~~~~~~----~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
++.+ ++. ++.+...|+++++++|+.||+|.+|++++++.+..+.+....++.++.|+|.-..+++++....
T Consensus 224 tfs~-~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~ 298 (311)
T KOG1446|consen 224 TFSG-YPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLV 298 (311)
T ss_pred eEee-ccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEE
Confidence 3333 222 2344457999999999999999999999999888887743337999999999999999886543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.3e-20 Score=123.47 Aligned_cols=147 Identities=15% Similarity=0.182 Sum_probs=117.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe---eeeeeccCCC--cEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEE--ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
.+|+||++.|++|+.||.|.+|+..... ....-..|.. .++|+.|+++|++|++-+.|+++++||++...+.+..
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence 3799999999999999999999975432 1233356666 8999999999999999999999999999988777776
Q ss_pred cccccccc---eeEeeecCCCEEEEecC------CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 76 FVGLSPNS---VDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 76 ~~~~~~~~---v~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
..+ -+.. -.|+.+|+.++|++|.. .|.+.+||..+-..++.+..... .|..+.|+|.=+.|..|+.+|.
T Consensus 403 ~tg-L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a-Svv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 403 RTG-LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA-SVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred hcC-CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc-eEEEEeecchhhheeeecCCCc
Confidence 654 3222 23555999999999863 45799999988888888855544 6999999999888888888887
Q ss_pred ccC
Q 031924 147 VNP 149 (150)
Q Consensus 147 v~~ 149 (150)
+..
T Consensus 481 ~~v 483 (641)
T KOG0772|consen 481 AHV 483 (641)
T ss_pred eEE
Confidence 754
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=117.00 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=117.0
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCC-------------------------CeeeeeeccCCCcEEEEEEEeCCCEEEeec
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRK-------------------------NTVQTRSEFSEEELTSVVLMKNGRKVVCGS 56 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 56 (150)
...+++..+++++.|..|++|+.+. +.++..+.+|.++|.++.|++ ...+.+++
T Consensus 200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~S 278 (423)
T KOG0313|consen 200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVS 278 (423)
T ss_pred EecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeec
Confidence 4567899999999999999999322 113457889999999999998 67789999
Q ss_pred CCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe---eeeeccCCCCcceeEEEEc
Q 031924 57 QSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLGIA 132 (150)
Q Consensus 57 ~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~i~~~~~~ 132 (150)
.|.+|+.||+. .+....++.+ +..+.++. .+..++|++|+.|..+++||++++. ..+.+..|... |.++.|+
T Consensus 279 wDHTIk~WDle-tg~~~~~~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw-Vssvkws 354 (423)
T KOG0313|consen 279 WDHTIKVWDLE-TGGLKSTLTT--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW-VSSVKWS 354 (423)
T ss_pred ccceEEEEEee-cccceeeeec--CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhh-hhheecC
Confidence 99999999996 4566666655 56788888 7888999999999999999998754 56778899886 9999999
Q ss_pred CCcc-EEEecccccccc
Q 031924 133 SVLC-FINSGFLSLNVN 148 (150)
Q Consensus 133 ~~~~-~l~s~~~~~~v~ 148 (150)
|... .|++|+.++.+.
T Consensus 355 p~~~~~~~S~S~D~t~k 371 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVK 371 (423)
T ss_pred CCCceEEEEEecCCeEE
Confidence 9665 588998887654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=118.86 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=117.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccc------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD------ 74 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~------ 74 (150)
++|++++..+++++.||++|+|+.++...+.....|..+|.++.|+|||++|++-+.| ..++|+..+. ..++
T Consensus 150 vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~t~~~ 227 (398)
T KOG0771|consen 150 VAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARKTPFS 227 (398)
T ss_pred EEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhcCCcc
Confidence 5789999999999999999999988877777777889999999999999999999999 9999998542 0000
Q ss_pred ------------------------------------------------ccccccccceeEee-ecCCCEEEEecCCCcEE
Q 031924 75 ------------------------------------------------RFVGLSPNSVDALL-KLDEDRVITGSENGLIS 105 (150)
Q Consensus 75 ------------------------------------------------~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~ 105 (150)
+... ....|.++. +.+|++++.|+.||.|-
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-RFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-ccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 0000 123577777 88999999999999999
Q ss_pred EEeccCCeeeeecc-CCCCcceeEEEEcCCccEEEecccccccc
Q 031924 106 LVGILPNRIIQPIA-EHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 106 ~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+++..+.+.++.++ .|.. -|+.+.|+||.+++++-+.+....
T Consensus 307 i~~~~~lq~~~~vk~aH~~-~VT~ltF~Pdsr~~~svSs~~~~~ 349 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLG-FVTGLTFSPDSRYLASVSSDNEAA 349 (398)
T ss_pred EEEeceeeeeEeehhhhee-eeeeEEEcCCcCcccccccCCcee
Confidence 99999888777664 6767 599999999999999877665443
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-20 Score=128.93 Aligned_cols=140 Identities=18% Similarity=0.188 Sum_probs=125.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.|+|-+.+.+.++.|..+.+||.+...+.....+|..-+..+.|+|+|++++.++.|.+++|||.. -++....|.. |
T Consensus 118 v~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~-agk~~~ef~~-~ 195 (825)
T KOG0267|consen 118 VDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT-AGKLSKEFKS-H 195 (825)
T ss_pred eeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc-cccccccccc-c
Confidence 4699999999999999999999999777888889999999999999999999999999999999985 5688899998 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+..+..+. .|..-++++|+.|+++++||+++-+.+........ +|.+.+|+|+++.+++|-.
T Consensus 196 e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~-~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 196 EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETD-GVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred cccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccC-CceeeeecCCceeeecCch
Confidence 99988887 67777889999999999999998887777755545 7999999999999988764
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-20 Score=122.53 Aligned_cols=144 Identities=17% Similarity=0.131 Sum_probs=122.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++.+||.+..++++.||.|.|||+.....++.+++|.+.+.|+.++++|..|.+|+.|.+++-||+++. +..+... .
T Consensus 515 La~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlreg-rqlqqhd--F 591 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG-RQLQQHD--F 591 (705)
T ss_pred hhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhh-hhhhhhh--h
Confidence 467899999999999999999999999899999999999999999999999999999999999999754 4443332 2
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
...|.++- .|++.+++.|..++.+.+......+ ...+..|+.- |.++.|.+.|+++++.+.+..+|.
T Consensus 592 ~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheSc-VLSlKFa~cGkwfvStGkDnlLna 659 (705)
T KOG0639|consen 592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESC-VLSLKFAYCGKWFVSTGKDNLLNA 659 (705)
T ss_pred hhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccE-EEEEEecccCceeeecCchhhhhh
Confidence 45677877 8999999999999999988874333 3344467774 999999999999999999887774
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-18 Score=105.72 Aligned_cols=145 Identities=14% Similarity=0.210 Sum_probs=112.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC------C--------ee-eeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEE
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK------N--------TV-QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~------~--------~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~ 65 (150)
++|+|.|.+.++|+..++++|..... + .. -++-+.|.+.+.|.+|+|+|+.+++|+.|.+|++.-
T Consensus 38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~ 117 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLP 117 (350)
T ss_pred EEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEe
Confidence 57999999999999999999875422 1 01 134456788999999999999999999999999865
Q ss_pred cccc---------------------------------------------------cccccccccccccceeEeeecCCCE
Q 031924 66 WGYF---------------------------------------------------KDCSDRFVGLSPNSVDALLKLDEDR 94 (150)
Q Consensus 66 ~~~~---------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~ 94 (150)
+... ++..+.+.+ |...|.++.+.++-+
T Consensus 118 fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg-htghilalyswn~~m 196 (350)
T KOG0641|consen 118 FNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG-HTGHILALYSWNGAM 196 (350)
T ss_pred cccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC-CcccEEEEEEecCcE
Confidence 4321 233445567 788888888888899
Q ss_pred EEEecCCCcEEEEeccCCeeeeeccC--C----CCcceeEEEEcCCccEEEecccccc
Q 031924 95 VITGSENGLISLVGILPNRIIQPIAE--H----SEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 95 l~~~~~dg~i~~~d~~~~~~~~~~~~--~----~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
+++|++|.+|++||++-..++.++.. | +...|.++++.|.|++|++|-.+..
T Consensus 197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss 254 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS 254 (350)
T ss_pred EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc
Confidence 99999999999999998777776631 1 1235999999999999999876543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=115.78 Aligned_cols=140 Identities=11% Similarity=0.102 Sum_probs=119.1
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCC-------eeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
++|+| +.+.|++|+.|.+|.||++..+ +++..+.+|...|--++|+|. .+.|++++.|.+|.+|++.+ +.
T Consensus 87 i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~t-ge 165 (472)
T KOG0303|consen 87 IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGT-GE 165 (472)
T ss_pred cccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccC-Cc
Confidence 46888 6789999999999999998764 346778899999999999997 66788999999999999964 44
Q ss_pred cccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 72 CSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
..-++. |+..|.++. +.+|.++++.+.|..||+||.++++.+..-..|++....++.|-.+|.++.||..
T Consensus 166 ali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfs 236 (472)
T KOG0303|consen 166 ALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFS 236 (472)
T ss_pred eeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccc
Confidence 444443 899999998 8899999999999999999999999988888898877888999999996655554
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-19 Score=116.59 Aligned_cols=143 Identities=17% Similarity=0.184 Sum_probs=121.8
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc--------ccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--------FKDCS 73 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~--------~~~~~ 73 (150)
+-+|+|.+++.|...+.|++|.+.+|+.+..+..|-..|+|+.|+-||.+|++|+.||.|.+|++-. ..+..
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 3467898999998999999999999999888889999999999999999999999999999998631 12445
Q ss_pred cccccccccceeEee-ec--CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 74 DRFVGLSPNSVDALL-KL--DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 74 ~~~~~~~~~~v~~~~-~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
..|.. |.-+|+.+. .+ ....+++++.|.++++||+..+..+.++.. +. ++.+++++|-++.+..|+..|+|
T Consensus 168 ~~f~~-HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~-si~av~lDpae~~~yiGt~~G~I 241 (476)
T KOG0646|consen 168 HIFSD-HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PS-SIKAVALDPAERVVYIGTEEGKI 241 (476)
T ss_pred eeecc-CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CC-cceeEEEcccccEEEecCCcceE
Confidence 66777 888899876 22 446899999999999999999998887743 34 69999999999999999988876
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-20 Score=119.04 Aligned_cols=147 Identities=17% Similarity=0.223 Sum_probs=112.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-----------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----------- 69 (150)
+.|.++++.+++++.|+.+++|++...+...++.+|.+.|+++.|......+++|+.|.++++||+...
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~ 304 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ 304 (459)
T ss_pred eeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccc
Confidence 468889999999999999999999999888899999999999988876666777777777777776421
Q ss_pred --------------------------------------------------------------------cccccccc----
Q 031924 70 --------------------------------------------------------------------KDCSDRFV---- 77 (150)
Q Consensus 70 --------------------------------------------------------------------~~~~~~~~---- 77 (150)
..+.+.+.
T Consensus 305 cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~ 384 (459)
T KOG0288|consen 305 CNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGF 384 (459)
T ss_pred ccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccc
Confidence 00011111
Q ss_pred -cccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCc-ceeEEEEcCCccEEEecccccccc
Q 031924 78 -GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-PIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 78 -~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
. ..+.-..+.+|++.++++|+.||.|++|+..++++...+...... .|++++|+|.|..+++++....+.
T Consensus 385 k~-asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~ 456 (459)
T KOG0288|consen 385 KC-ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVT 456 (459)
T ss_pred cc-ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceE
Confidence 0 011122344899999999999999999999999988777544331 499999999999999998776553
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-19 Score=111.02 Aligned_cols=141 Identities=15% Similarity=0.189 Sum_probs=113.0
Q ss_pred CcceEEEEcCCCeEEEEEcCCCee--eeeeccCCCcEEEEEEEeC--CCEEEeecCCCeEEEEEccccc-cccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCSDRFVGLS 80 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~ 80 (150)
-|.+|++++.||+|-||.-+.++- ......|...|++++|.|. |-.|++++.||+|.+++.+..+ -...++...|
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence 689999999999999999888753 3445678999999999997 7788999999999999987553 3333333228
Q ss_pred ccceeEee-ecC---C-----------CEEEEecCCCcEEEEeccCCe--eeeeccCCCCcceeEEEEcCCc----cEEE
Q 031924 81 PNSVDALL-KLD---E-----------DRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLGIASVL----CFIN 139 (150)
Q Consensus 81 ~~~v~~~~-~~~---~-----------~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~----~~l~ 139 (150)
+-.++++. .|. | +.|++|+.|..|++|+..+++ ..+.+..|.++ |+.++|.|.- .+||
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw-VRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW-VRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchh-hhhhhhccccCCCceeeE
Confidence 88888776 332 3 579999999999999987654 44568899997 9999999964 5799
Q ss_pred eccccccc
Q 031924 140 SGFLSLNV 147 (150)
Q Consensus 140 s~~~~~~v 147 (150)
+|+.+++|
T Consensus 228 S~SqDg~v 235 (299)
T KOG1332|consen 228 SCSQDGTV 235 (299)
T ss_pred EecCCCcE
Confidence 99999876
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=114.90 Aligned_cols=139 Identities=13% Similarity=0.177 Sum_probs=114.6
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccccccccccccccccee
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 85 (150)
.+.|++|+.|.+|.+||+.++++...+..|...|.++.|+|. ...|++|+.|+++.++|.+........++. .+.|.
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VE 333 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--DGEVE 333 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--ccceE
Confidence 468999999999999999999999999989999999999996 778899999999999999854444444442 44566
Q ss_pred Eee--ecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCc-cEEEecccccccc
Q 031924 86 ALL--KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVL-CFINSGFLSLNVN 148 (150)
Q Consensus 86 ~~~--~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~~~~v~ 148 (150)
.+. ......++++..||+++-+|++. ++++.++.+|.+ +|.++++++.. .++++++.+..|+
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vk 399 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVK 399 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEE
Confidence 555 44566888889999999999986 489999999999 79999999854 5688888776654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-20 Score=123.60 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=120.1
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeee--eccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
..||++.|++|+.-.++.|||+........ +........+++.+||.+..++++.||.|.|||+. ....+..|.+ |
T Consensus 473 L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh-nq~~VrqfqG-h 550 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLVRQFQG-H 550 (705)
T ss_pred ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-cceeeecccC-C
Confidence 578999999999999999999987654322 22222356678899999999999999999999996 4578889999 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
++...|+. +++|..|-+|+-|.+||-||++.++.++... ... .|.++-++|++.+++.|-.+++|-.
T Consensus 551 tDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~S-QIfSLg~cP~~dWlavGMens~vev 618 (705)
T KOG0639|consen 551 TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSS-QIFSLGYCPTGDWLAVGMENSNVEV 618 (705)
T ss_pred CCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhh-hheecccCCCccceeeecccCcEEE
Confidence 99999998 9999999999999999999999988766552 234 3999999999999999988887754
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-19 Score=112.88 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=115.4
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 82 (150)
|-..++++++++.|.+-.+||+++++.+..+.+|+..++-++-+|..+.+++.+.|.+.++||++..-..+..|.+ |.+
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG-Htd 358 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG-HTD 358 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc-ccc
Confidence 4456889999999999999999999999999999999999999999999999999999999999855466778889 999
Q ss_pred ceeEeeecCCCEEEEecCCCcEEEEeccCCe-eeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 83 SVDALLKLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 83 ~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
.+++.....+..+++|+.|.+|++||+++.+ ++.++... . +++.++.+..+..||.
T Consensus 359 tVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtd-S-~~NRvavs~g~~iIAi 415 (481)
T KOG0300|consen 359 TVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTD-S-PANRVAVSKGHPIIAI 415 (481)
T ss_pred ceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecC-C-ccceeEeecCCceEEe
Confidence 9999988888899999999999999998765 56666332 3 5777777766666654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-18 Score=118.67 Aligned_cols=136 Identities=18% Similarity=0.247 Sum_probs=121.2
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeee-eccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccccee
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTR-SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 85 (150)
..++.+++.+.+|++||..++..+.. +.+|.+.|.++++...+.++++|+.|.++++||.. .+.+...+.+ |.+.+.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~-sg~C~~~l~g-h~stv~ 295 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS-TGECTHSLQG-HTSSVR 295 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC-CCcEEEEecC-CCceEE
Confidence 56788999999999999999988776 99999999999998888999999999999999974 6799999999 998888
Q ss_pred EeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
++. ..+..+++|+.|.+|++|++.++..+..+.+|.+ +|.++..+ +.++++|+.++.|.
T Consensus 296 ~~~-~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~-~V~~v~~~--~~~lvsgs~d~~v~ 354 (537)
T KOG0274|consen 296 CLT-IDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG-PVNCVQLD--EPLLVSGSYDGTVK 354 (537)
T ss_pred EEE-ccCceEeeccCCceEEEEeccCcceEEEeccccc-cEEEEEec--CCEEEEEecCceEE
Confidence 775 4456778899999999999999999999988888 79999988 88999999988664
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=109.89 Aligned_cols=147 Identities=13% Similarity=0.109 Sum_probs=115.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc-
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL- 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~- 79 (150)
+.|++.|.++++|+.||.|-|||+.+...-+.+.+|..+|.+++|+++|++|++++.|..+.+||+... .+.+++.-.
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g-s~l~rirf~s 107 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG-SPLKRIRFDS 107 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC-CceeEEEccC
Confidence 368999999999999999999999998777778899999999999999999999999999999998643 222221100
Q ss_pred -------ccc---------------------cee---------------E--eeecCCCEEEEecCCCcEEEEeccCCee
Q 031924 80 -------SPN---------------------SVD---------------A--LLKLDEDRVITGSENGLISLVGILPNRI 114 (150)
Q Consensus 80 -------~~~---------------------~v~---------------~--~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 114 (150)
|+. ++. + ...+.|+++++|...|.+.+++..+.++
T Consensus 108 pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~ 187 (405)
T KOG1273|consen 108 PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLEC 187 (405)
T ss_pred ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhee
Confidence 000 000 0 0134567999999999999999999888
Q ss_pred eeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 115 IQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+..++......|..+.++..|++++.-+.+-.|.
T Consensus 188 vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR 221 (405)
T KOG1273|consen 188 VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIR 221 (405)
T ss_pred eeeeeechheeeeEEEEeccCcEEEEecCCceEE
Confidence 8777655423599999999999999887776554
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-18 Score=119.54 Aligned_cols=147 Identities=10% Similarity=0.081 Sum_probs=119.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc-
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL- 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~- 79 (150)
++|+-+|+.++.|+.|-.|++.++........+.+|+++|.++.|+|.+.+|++.+.||+|++||+. .+.+..++.+.
T Consensus 102 ~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~-~~~~~~tl~~v~ 180 (933)
T KOG1274|consen 102 LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ-DGILSKTLTGVD 180 (933)
T ss_pred EEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc-cchhhhhcccCC
Confidence 3678899999999999999999999988888999999999999999999999999999999999995 44555544421
Q ss_pred ----cc-ccee-Eee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCC-CCcceeEEEEcCCccEEEecccccccc
Q 031924 80 ----SP-NSVD-ALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEH-SEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ----~~-~~v~-~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.. ..+. ... +|++..++....|+.|++|+.........+... ....+..+.|+|.|+|||+++.++.|-
T Consensus 181 k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~ 257 (933)
T KOG1274|consen 181 KDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQIL 257 (933)
T ss_pred ccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEE
Confidence 01 2222 233 888888888999999999999888776666432 222489999999999999999988763
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-18 Score=109.71 Aligned_cols=141 Identities=12% Similarity=0.172 Sum_probs=110.9
Q ss_pred ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe--CCCEEEeecCCCeEEEEEccccccccc-ccccccc-cc
Q 031924 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGLSP-NS 83 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~~~~~~-~~~~~~~-~~ 83 (150)
..++++...|.|++||..+++.+..+++++..++.++|.. ....+.+++.||+|++||++..++..+ .+.. ++ .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~-~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ-QSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC-CCCCc
Confidence 4578888999999999999999999999999999999987 366789999999999999986543332 2334 44 34
Q ss_pred eeEee-ecCCCEEEEec----CCCcEEEEeccCCee-eeec-cCCCCcceeEEEEcC-CccEEEeccccccccCC
Q 031924 84 VDALL-KLDEDRVITGS----ENGLISLVGILPNRI-IQPI-AEHSEYPIESLGIAS-VLCFINSGFLSLNVNPL 150 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~~----~dg~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v~~~ 150 (150)
..++. ..+++.+++|. .+-.+.+||++..+. +..+ ..|.+ .|++++|+| +.+.|+|||.+|-||.+
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlf 193 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLF 193 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC-cceeEEecCCCCCeEEeecccceEEee
Confidence 55666 44777888876 356899999987654 5544 46777 599999999 56899999999999864
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.4e-18 Score=107.22 Aligned_cols=144 Identities=13% Similarity=0.166 Sum_probs=115.9
Q ss_pred eecCc--ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccc------
Q 031924 3 FAADA--MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD------ 74 (150)
Q Consensus 3 ~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~------ 74 (150)
|.+.- ..|++|+.||.|.+|+....+.+..+++|.+.|+.++++|.++..++.+.|+.+++||+-.. +.-.
T Consensus 91 F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G-r~a~v~~L~~ 169 (362)
T KOG0294|consen 91 FYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG-RVAFVLNLKN 169 (362)
T ss_pred ecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC-ccceeeccCC
Confidence 44433 38899999999999999999999999999999999999999999999999999999997321 1000
Q ss_pred ------------c-------------------c--ccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCC
Q 031924 75 ------------R-------------------F--VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (150)
Q Consensus 75 ------------~-------------------~--~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 121 (150)
. + .. .+..+.++...++..+++|..|+.|++||..+..++..+.+|
T Consensus 170 ~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH 248 (362)
T KOG0294|consen 170 KATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIE-NPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAH 248 (362)
T ss_pred cceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhh-ccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecc
Confidence 0 0 00 112233444667889999999999999999988899999999
Q ss_pred CCcceeEEEE--cCCccEEEeccccccccC
Q 031924 122 SEYPIESLGI--ASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 122 ~~~~i~~~~~--~~~~~~l~s~~~~~~v~~ 149 (150)
+. .|..+.+ .|++.+|+|+|.+|.|..
T Consensus 249 ~~-RVK~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 249 EN-RVKDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred hh-heeeeEEEecCCceEEEEeccCceEEE
Confidence 88 6988884 578999999999998864
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=102.60 Aligned_cols=141 Identities=16% Similarity=0.105 Sum_probs=112.8
Q ss_pred cCcceEEEEcCCCeEEEEEcCCC---eeeeeeccCCCcEEEEEEEe--CCCEEEeecCCCeEEEEEcccccc--cccccc
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKD--CSDRFV 77 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~ 77 (150)
..|++|++++.|++|+||..+.+ +.+..+.+|.+++..++|.. -|..|+++++||+|.||.-. .++ ......
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~-~g~w~k~~e~~ 99 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE-NGRWTKAYEHA 99 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC-CCchhhhhhhh
Confidence 35889999999999999999874 45788999999999999975 59999999999999999864 343 233445
Q ss_pred cccccceeEee-ec--CCCEEEEecCCCcEEEEeccCC-e--eeeeccCCCCcceeEEEEcCC---c-----------cE
Q 031924 78 GLSPNSVDALL-KL--DEDRVITGSENGLISLVGILPN-R--IIQPIAEHSEYPIESLGIASV---L-----------CF 137 (150)
Q Consensus 78 ~~~~~~v~~~~-~~--~~~~l~~~~~dg~i~~~d~~~~-~--~~~~~~~~~~~~i~~~~~~~~---~-----------~~ 137 (150)
. |...++++. .| -|-.|++++.||.|.+.+.+.. . ..+....|+- .++++.|.|- | +.
T Consensus 100 ~-h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 100 A-HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-GVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred h-hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-ccceeeecCcCCCccccccCcccccce
Confidence 6 889999988 44 4568999999999999988654 2 3344457766 7999999986 5 56
Q ss_pred EEecccccccc
Q 031924 138 INSGFLSLNVN 148 (150)
Q Consensus 138 l~s~~~~~~v~ 148 (150)
|++|+.+..|.
T Consensus 178 lvSgGcDn~Vk 188 (299)
T KOG1332|consen 178 LVSGGCDNLVK 188 (299)
T ss_pred eeccCCcccee
Confidence 89999887764
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-17 Score=100.68 Aligned_cols=136 Identities=18% Similarity=0.203 Sum_probs=96.9
Q ss_pred CeeecCcceEEEEcC----------CCeEEEEEcCC-Ceeeeeecc-CCCcEEEEEEEeCCCEEEe--ecCCCeEEEEEc
Q 031924 1 MTFAADAMKLLGTSG----------DGTLSVCNLRK-NTVQTRSEF-SEEELTSVVLMKNGRKVVC--GSQSGTVLLYSW 66 (150)
Q Consensus 1 i~~~~~~~~l~~~~~----------d~~i~i~d~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~--~~~d~~i~i~~~ 66 (150)
|.|+|+|++|+.-.. -+...+|.++. +.....+.- ..++|.+++|+|+|+.|++ |..++.+.+||+
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~ 90 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV 90 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence 468999987776433 13455555532 223333332 3457999999999998754 446789999998
Q ss_pred ccccccccccccccccceeEee-ecCCCEEEEecC---CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 67 GYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
+ .+.+..+. ...+..+. +|+|++++.++. .|.+.+||.++.+.+... .|.. +..++|+|||++++++.
T Consensus 91 ~--~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-~~~~--~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 91 K--GKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-EHSD--ATDVEWSPDGRYLATAT 162 (194)
T ss_pred c--ccEeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-ccCc--EEEEEEcCCCCEEEEEE
Confidence 5 45555553 34556666 999999998864 467999999988888776 3433 78999999999999987
Q ss_pred cc
Q 031924 143 LS 144 (150)
Q Consensus 143 ~~ 144 (150)
..
T Consensus 163 t~ 164 (194)
T PF08662_consen 163 TS 164 (194)
T ss_pred ec
Confidence 65
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=109.41 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=115.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCC--eeeeeeccCCCcEEEEEEEeCCC-EEEeecCCCeEEEEEccccc-------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFK------- 70 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~------- 70 (150)
|.|+|....+++++.|+++++|.+... ..++.+.-...++.+..|.|+|. .+++++....++.||+..-.
T Consensus 219 v~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~ 298 (514)
T KOG2055|consen 219 VQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP 298 (514)
T ss_pred EEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC
Confidence 468999999999999999999988653 34556666677999999999998 88899999999999985320
Q ss_pred -----ccccccc-----------c-------------------ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCee
Q 031924 71 -----DCSDRFV-----------G-------------------LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRI 114 (150)
Q Consensus 71 -----~~~~~~~-----------~-------------------~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~ 114 (150)
+....|. | +.++.+..+. +.+++.|++.+.+|.|++||++...+
T Consensus 299 ~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 299 YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC 378 (514)
T ss_pred CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce
Confidence 0111110 1 0123344454 66888999999999999999999999
Q ss_pred eeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 115 IQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
++.+.......-++++.++++.++|+|+.+|.||-
T Consensus 379 ~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 379 LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNI 413 (514)
T ss_pred EEEEeecCccceeeeeecCCCceEEeccCcceEEE
Confidence 99886655544667888999999999999999985
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=105.12 Aligned_cols=135 Identities=13% Similarity=0.156 Sum_probs=100.0
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-----------------
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------------- 69 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----------------- 69 (150)
...+++|+-||.|+.+|+.+++ ...+..|...++|+.+++....+++|+.|++|++||.+..
T Consensus 65 ~~~~~~G~~dg~vr~~Dln~~~-~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v 143 (323)
T KOG1036|consen 65 ESTIVTGGLDGQVRRYDLNTGN-EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV 143 (323)
T ss_pred CceEEEeccCceEEEEEecCCc-ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec
Confidence 3455666666666666666653 2345678889999999998888999999999999998732
Q ss_pred -------------------------------------------------------c--------------cccccccccc
Q 031924 70 -------------------------------------------------------K--------------DCSDRFVGLS 80 (150)
Q Consensus 70 -------------------------------------------------------~--------------~~~~~~~~~~ 80 (150)
+ +....|+. |
T Consensus 144 ~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC-H 222 (323)
T KOG1036|consen 144 SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC-H 222 (323)
T ss_pred cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe-e
Confidence 0 11112222 2
Q ss_pred c---------cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 81 P---------NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 81 ~---------~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
. -+|.++. +|-...|++|+.||.|.+||+.+.+.+..+...+. .|.+++|+.+|..||.++..
T Consensus 223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~-SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYET-SISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred ecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCC-ceEEEEeccCCCeEEEEech
Confidence 2 1344555 55667899999999999999999988888877666 59999999999999988753
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.7e-18 Score=115.81 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=112.7
Q ss_pred cCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccce
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v 84 (150)
|++ .+++|+.|++|++|.- ++.++.+.+|.+.|+.+++.+++. |++++.||.|++|++. +.++.++.+ |.+-+
T Consensus 150 ~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~--ge~l~~~~g-htn~v 222 (745)
T KOG0301|consen 150 PEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLD--GEVLLEMHG-HTNFV 222 (745)
T ss_pred CCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEecc--Cceeeeeec-cceEE
Confidence 444 8889999999999975 667888999999999999998754 7788899999999984 688888889 99999
Q ss_pred eEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 85 DALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 85 ~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
.++. .+++..++++++|+++++|+.. .+.+.+ .|+...|.++.+-++|.. ++|+.+|.|..
T Consensus 223 Ysis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I-~lPttsiWsa~~L~NgDI-vvg~SDG~VrV 284 (745)
T KOG0301|consen 223 YSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI-TLPTTSIWSAKVLLNGDI-VVGGSDGRVRV 284 (745)
T ss_pred EEEEecCCCCeEEEecCCceEEEeecC--ceEEEE-ecCccceEEEEEeeCCCE-EEeccCceEEE
Confidence 9998 7889999999999999999975 777777 445546999999888874 56667777654
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-18 Score=111.41 Aligned_cols=142 Identities=15% Similarity=0.311 Sum_probs=116.0
Q ss_pred eeecCcc-eEEEEcCCCeEEEEEcCCCe---------eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc--
Q 031924 2 TFAADAM-KLLGTSGDGTLSVCNLRKNT---------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-- 69 (150)
Q Consensus 2 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-- 69 (150)
.|.++.. .+++|+.|..|++|.++.+. .+..+..|...|+++.|+|+|..|++|+.+|.+.+|-....
T Consensus 20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~ 99 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRI 99 (434)
T ss_pred EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCC
Confidence 3555544 89999999999999987632 23456688999999999999999999999999999976410
Q ss_pred ----c---------ccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCc
Q 031924 70 ----K---------DCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVL 135 (150)
Q Consensus 70 ----~---------~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (150)
. .....+.+ |...+..++ +++++.+++++.|..+++||+..++.+..+..|..+ ++.++|.|-+
T Consensus 100 ~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y-vqgvawDpl~ 177 (434)
T KOG1009|consen 100 FDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY-VQGVAWDPLN 177 (434)
T ss_pred ccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc-cceeecchhh
Confidence 0 11122345 667777776 899999999999999999999999999999999887 9999999999
Q ss_pred cEEEeccccc
Q 031924 136 CFINSGFLSL 145 (150)
Q Consensus 136 ~~l~s~~~~~ 145 (150)
+++++-+.+-
T Consensus 178 qyv~s~s~dr 187 (434)
T KOG1009|consen 178 QYVASKSSDR 187 (434)
T ss_pred hhhhhhccCc
Confidence 9999877654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-17 Score=108.14 Aligned_cols=146 Identities=19% Similarity=0.168 Sum_probs=119.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC---------CeeeeeeccCCCcEEEEEEEeC--CCEEEeecCCCeEEEEEcccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK---------NTVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~ 69 (150)
+.|+-|+..|++++.||.|.+|++.. -++...+..|.-+|+++...+. ..++++++.|.++++||+. .
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS-~ 207 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS-L 207 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEec-c
Confidence 46888999999999999999998643 2456778889999999998875 5689999999999999995 5
Q ss_pred cccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCC----------------eeeeeccCCCC-cceeEEEE
Q 031924 70 KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPN----------------RIIQPIAEHSE-YPIESLGI 131 (150)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~----------------~~~~~~~~~~~-~~i~~~~~ 131 (150)
+..+.++.. +..+.++. .|.++.++.|+.+|.|.+.++... ..+..+.+|.+ .+|+++++
T Consensus 208 g~LLlti~f--p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai 285 (476)
T KOG0646|consen 208 GVLLLTITF--PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI 285 (476)
T ss_pred ceeeEEEec--CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE
Confidence 677776654 77788887 899999999999999998876421 13344456655 35999999
Q ss_pred cCCccEEEeccccccccC
Q 031924 132 ASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 132 ~~~~~~l~s~~~~~~v~~ 149 (150)
+-||.+|++|+.+++|+.
T Consensus 286 s~DgtlLlSGd~dg~Vcv 303 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGKVCV 303 (476)
T ss_pred ecCccEEEeeCCCCCEEE
Confidence 999999999999999874
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-18 Score=106.46 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=120.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe-eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
++|+.|.++|++|+.++-+++||++..+ +...+.+|.+.|..+.|....+.+++.+.|++||+||.+ .+..++++..
T Consensus 106 ~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r-Tgt~v~sL~~- 183 (334)
T KOG0278|consen 106 VAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR-TGTEVQSLEF- 183 (334)
T ss_pred EEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec-cCcEEEEEec-
Confidence 4789999999999999999999998865 457788999999999999998999999999999999987 4577777754
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
+.+++++- +++|+++.++ ..+.|.+||..+-..++.+... . .|.+..++|+..+++.|+.++.+..
T Consensus 184 -~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P-~-nV~SASL~P~k~~fVaGged~~~~k 250 (334)
T KOG0278|consen 184 -NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP-C-NVESASLHPKKEFFVAGGEDFKVYK 250 (334)
T ss_pred -CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc-c-ccccccccCCCceEEecCcceEEEE
Confidence 66788877 7788776654 5678999999998888877443 4 3999999999999999998887653
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-17 Score=102.51 Aligned_cols=139 Identities=12% Similarity=0.159 Sum_probs=108.9
Q ss_pred CcceEEEEcCCCeEEEEEcCCCe------------ee---eeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEcccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNT------------VQ---TRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~------------~~---~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~ 69 (150)
.++++++|+.||.+.+||++.-. ++ ..-.+|...|.++.|-| |...|.+++-|.++++||..+.
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 58899999999999999997632 11 11235667899999998 5667889999999999998643
Q ss_pred cccccccccccccceeEee-ec---CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccE-EEecccc
Q 031924 70 KDCSDRFVGLSPNSVDALL-KL---DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCF-INSGFLS 144 (150)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~~-~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~~ 144 (150)
+....|+- ++.|..-. +| ..-++++|..+-.|++.|+.++...+.+.+|.+ .|.++.|+|...+ |++|+.+
T Consensus 135 -Q~a~~F~m--e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vlaV~Wsp~~e~vLatgsaD 210 (397)
T KOG4283|consen 135 -QEAVDFKM--EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLAVEWSPSSEWVLATGSAD 210 (397)
T ss_pred -eeeEEeec--CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEEEEeccCceeEEEecCCC
Confidence 44445543 45565443 33 345788888899999999999999999999999 5999999998775 7899988
Q ss_pred cccc
Q 031924 145 LNVN 148 (150)
Q Consensus 145 ~~v~ 148 (150)
+.|.
T Consensus 211 g~ir 214 (397)
T KOG4283|consen 211 GAIR 214 (397)
T ss_pred ceEE
Confidence 8764
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=114.85 Aligned_cols=142 Identities=14% Similarity=0.116 Sum_probs=115.0
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCe-------eeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNT-------VQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
+.|+| |...|++++.||.|++|.+..+. ....+..|.+.|.++.|+|- ...|+++++|.+|++||+. ..+
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~-~~~ 711 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA-NAK 711 (1012)
T ss_pred cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh-hhh
Confidence 46888 78899999999999999987642 34667889999999999995 6778999999999999996 457
Q ss_pred cccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe-eeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 72 CSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
...++.+ |.+.|..++ +++|+.+++.+.||++++|+.++++ .++.=....+..--++.|.-||++++..+.+
T Consensus 712 ~~~~l~g-HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 712 LYSRLVG-HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred hhheecc-CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 7788889 999999998 9999999999999999999998754 3333222222234568898999987766654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.2e-17 Score=103.85 Aligned_cols=141 Identities=10% Similarity=-0.009 Sum_probs=107.3
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCe--------eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc-----
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY----- 68 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~----- 68 (150)
+.||+|+++++++..--|++|.+--++ ....+++|...|..++|+++.+.+++.+.||+.++||.+-
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG 314 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence 579999999999998899999974322 3467889999999999999999999999999999999741
Q ss_pred -ccccccccc----cccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeecc-CCCCcceeEEEEcCCccEEEecc
Q 031924 69 -FKDCSDRFV----GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIA-EHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 69 -~~~~~~~~~----~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
..+.++... .+...++.-..+|+|+.|+.+. ...++++..++++....+. .|.. .|.+++|+++|+++++++
T Consensus 315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~-~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHST-TISSISYSSDGKYIATCG 392 (420)
T ss_pred CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcC-ceeeEEecCCCcEEeeec
Confidence 112222221 1023444333488888887654 4589999988887666654 5666 599999999999999998
Q ss_pred cc
Q 031924 143 LS 144 (150)
Q Consensus 143 ~~ 144 (150)
.-
T Consensus 393 dr 394 (420)
T KOG2096|consen 393 DR 394 (420)
T ss_pred ce
Confidence 53
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-17 Score=112.88 Aligned_cols=130 Identities=20% Similarity=0.249 Sum_probs=115.9
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL 88 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~ 88 (150)
.+++||-|.++++|-. +++...+++|+..|.+++.-|++ .+++|+.|.+|++|.- ++..++|.+ |.+-|..++
T Consensus 114 ~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~g-HtD~VRgL~ 186 (745)
T KOG0301|consen 114 TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSG-HTDCVRGLA 186 (745)
T ss_pred ceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC---Cchhhhhcc-chhheeeeE
Confidence 4899999999999976 44566689999999999999987 7899999999999984 588999999 999999999
Q ss_pred ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 89 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
-.++..+++++.||.|++|++ +++++..+.+|..+ +.++...+++..+++++-+..+
T Consensus 187 vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~-vYsis~~~~~~~Ivs~gEDrtl 243 (745)
T KOG0301|consen 187 VLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNF-VYSISMALSDGLIVSTGEDRTL 243 (745)
T ss_pred EecCCCeEeecCCceEEEEec-cCceeeeeeccceE-EEEEEecCCCCeEEEecCCceE
Confidence 777888999999999999999 78888888899997 9999988999999999988765
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=105.76 Aligned_cols=147 Identities=20% Similarity=0.259 Sum_probs=115.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCC-cEEEEEEEeCCCEEEeecCCCeEEEEEccc-----cccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-ELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-----FKDCSD 74 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~-----~~~~~~ 74 (150)
++|+.+++.|++++++|.|.+||+++..++.++....+ .-++++.++++.+|++|+..|.|.|||... ..+.+.
T Consensus 350 ~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred EEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchh
Confidence 46888999999999999999999999988877764322 346777889999999999999999999532 124445
Q ss_pred ccccccccceeEee-ecCCCEEEEecC--CCcEEEEeccCCeeeeeccCCCC--cceeEEEEcCCccEEEecccccccc
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSE--YPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
++.. -...|+.+. +++.++|+.++. +..+|+..+.+......++.... -.+++++|+|.+-++|.|.-.+.|.
T Consensus 430 ~~dN-Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 430 TVDN-LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred hhhh-hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence 5544 456677887 888898887774 56899999988887777754432 1399999999999999998887764
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-16 Score=108.38 Aligned_cols=145 Identities=17% Similarity=0.204 Sum_probs=115.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee--eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc-
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~- 77 (150)
|+.+|.+..++.|+.||.+..++...++.. ..+...++++.++.|+|++..++.|+.||.|++||... +.......
T Consensus 116 iai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~-~~t~~~~~~ 194 (691)
T KOG2048|consen 116 IAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS-GQTLHIITM 194 (691)
T ss_pred EEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC-CceEEEeee
Confidence 466888999999999998888888887654 33445678999999999999999999999999999853 33333111
Q ss_pred ---ccc---ccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 78 ---GLS---PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 78 ---~~~---~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+.. +.-|-++.......|++|.+.|.|.+||...+..++.+..|.. .|.+++.++++..+.+++.+..|
T Consensus 195 ~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~~i 269 (691)
T KOG2048|consen 195 QLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDPKI 269 (691)
T ss_pred cccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCCce
Confidence 101 1122244455778999999999999999999999999999988 59999999999999999988765
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-16 Score=99.34 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=102.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
|.|+|.+..|++++.||.+++||......... ..|..++.+++|.+ ...+++|+.||.|+++|+.. .....+-. |
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~-~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~--~~~~~igt-h 93 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK-FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNT--GNEDQIGT-H 93 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccchhhhhh-eecCCceeeeeccC-CceEEEeccCceEEEEEecC--Ccceeecc-C
Confidence 46888888888999999999999988744433 45788999999987 55689999999999999853 33334445 8
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
..++.|+. .+....+++|+.|++|++||.+.......+... . .|.++..+ |..|+.|+.
T Consensus 94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-k-kVy~~~v~--g~~LvVg~~ 153 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-K-KVYCMDVS--GNRLVVGTS 153 (323)
T ss_pred CCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-c-eEEEEecc--CCEEEEeec
Confidence 99999998 777789999999999999999875555555332 3 47766654 444555443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=100.14 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=112.7
Q ss_pred eeec--CcceEEEEcCCCeEEEEEcCCCeeeeeec-cCCCcEEEEEEEeCCC-EEEeecCCCeEEEEEcccccccccccc
Q 031924 2 TFAA--DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 2 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
+|+| +++.+++. .|+++..||+++.+....++ .|...+..+.|+|+.+ .|++++.||.|++||.+.....++.+.
T Consensus 177 ~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~ 255 (370)
T KOG1007|consen 177 AWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP 255 (370)
T ss_pred ccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence 5777 78888887 78899999999877655544 6777899999999865 468899999999999998778889999
Q ss_pred cccccceeEee-ec-CCCEEEEecCCCcEEEEeccCC-----------------------------eeeeeccCCCCcce
Q 031924 78 GLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPN-----------------------------RIIQPIAEHSEYPI 126 (150)
Q Consensus 78 ~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~-----------------------------~~~~~~~~~~~~~i 126 (150)
+ |..++-++- +| -.+++++++.|..|.+|...+- ..++++..|++ .|
T Consensus 256 ~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SV 333 (370)
T KOG1007|consen 256 G-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SV 333 (370)
T ss_pred C-CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ce
Confidence 9 999999887 44 5679999999999999864210 13335667888 69
Q ss_pred eEEEEcC-CccEEEeccccccc
Q 031924 127 ESLGIAS-VLCFINSGFLSLNV 147 (150)
Q Consensus 127 ~~~~~~~-~~~~l~s~~~~~~v 147 (150)
.+++|+. |--.+|+-+.+|.+
T Consensus 334 Y~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred EEEeeccCCCeeEEEeccCceE
Confidence 9999986 55567777776654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-16 Score=105.04 Aligned_cols=138 Identities=15% Similarity=0.149 Sum_probs=110.1
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
+.+|+.+++++++.|+++++|+ ..+++... ...++..|+.|+|.| .++.|+..|...+.|.++ +..-++.. ..
T Consensus 375 a~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~--~~lv~~~~-d~ 447 (626)
T KOG2106|consen 375 ATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTET--QDLVTIHT-DN 447 (626)
T ss_pred EcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEeccc--ceeEEEEe-cC
Confidence 5578899999999999999999 44444433 346788999999999 899999999999999863 33333333 46
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
.+++++. +|+|.+|+.|+.|+.|++|.+.. +........+.+.+|+.+.|++|++++.+-+.+..
T Consensus 448 ~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~e 514 (626)
T KOG2106|consen 448 EQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYE 514 (626)
T ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceE
Confidence 7788888 99999999999999999998754 55555555555568999999999999998877654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-16 Score=100.94 Aligned_cols=141 Identities=11% Similarity=0.150 Sum_probs=116.9
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC-CCeEEEEEccccccccccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++|+| +.+.++.++...++-||.-..++++..+-+|.+.|+-+.|.++|+.|++|.. |-.|..||++.....+..+..
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r 292 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALER 292 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhh
Confidence 46888 5669999999999999998888899888999999999999999999999985 578999999877666665554
Q ss_pred ccc----cceeEeeecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 79 LSP----NSVDALLKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 79 ~~~----~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
|. .+|..-..+++++|++|+.||.|++||++. +.....+..+.+ .++.++++|--..+|+++.
T Consensus 293 -hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd-~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 293 -HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSLNPIMPILATSSG 360 (406)
T ss_pred -hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc-cccceecCcccceeeeccC
Confidence 43 233333388999999999999999999987 666677777777 4999999999888888764
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-17 Score=113.63 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=111.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC---CCEEEeecCCCeEEEEEccc---------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN---GRKVVCGSQSGTVLLYSWGY--------- 68 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~i~~~~~--------- 68 (150)
++.+|++++|++|...|.+++|++..-+....++.|+.+|.|+.|+.. .+.|++++.|.-|.+||+..
T Consensus 465 ~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld 544 (1080)
T KOG1408|consen 465 LAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD 544 (1080)
T ss_pred EEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc
Confidence 468999999999999999999999776555555666666666666532 34455556666666665532
Q ss_pred --------------------------------------------------------------------------------
Q 031924 69 -------------------------------------------------------------------------------- 68 (150)
Q Consensus 69 -------------------------------------------------------------------------------- 68 (150)
T Consensus 545 ~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~ 624 (1080)
T KOG1408|consen 545 GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD 624 (1080)
T ss_pred ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe
Confidence
Q ss_pred --ccccccccccc--c-ccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 69 --FKDCSDRFVGL--S-PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 69 --~~~~~~~~~~~--~-~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
.++..+.|++. | ...|+....|.|.++++.+.|.++.++|..+++++..+.+|.. .|+.+.|.+|.+.|.+.+.
T Consensus 625 i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE-~VTG~kF~nDCkHlISvsg 703 (1080)
T KOG1408|consen 625 IESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE-AVTGVKFLNDCKHLISVSG 703 (1080)
T ss_pred ccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch-heeeeeecccchhheeecC
Confidence 25666667652 2 2335555588999999999999999999999999999999988 5999999999999999988
Q ss_pred cccc
Q 031924 144 SLNV 147 (150)
Q Consensus 144 ~~~v 147 (150)
++-|
T Consensus 704 DgCI 707 (1080)
T KOG1408|consen 704 DGCI 707 (1080)
T ss_pred CceE
Confidence 8754
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-15 Score=99.22 Aligned_cols=133 Identities=14% Similarity=0.212 Sum_probs=99.0
Q ss_pred ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEcccccccccccccccccceeE
Q 031924 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~ 86 (150)
+.+++++.|+.+++||+.+++....+..+. .+.+++|+|+++.+ ++++.++.+++||... ++....+.. +......
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~-~~~~~~~ 78 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPS-GPDPELF 78 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccC-CCCccEE
Confidence 567888999999999999988877776543 46789999999876 5677889999999863 355555544 4333322
Q ss_pred eeecCCCEEEE-ecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 87 LLKLDEDRVIT-GSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 87 ~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
..+++++.+++ ++.++.+++||+.+.+.+..+..+ . .+..++|+|+|+++++++.+.
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~-~~~~~~~~~dg~~l~~~~~~~ 136 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-V-EPEGMAVSPDGKIVVNTSETT 136 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-C-CcceEEECCCCCEEEEEecCC
Confidence 33788886655 456899999999888777666432 2 367899999999998877643
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.6e-16 Score=98.90 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=102.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe-----eeeeeccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEcccc--ccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-----VQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYF--KDC 72 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~--~~~ 72 (150)
|+|+.||++|++++.|+.|++|+++... +++. .-.-+-.+.+.|+||-+-++.. -...++++|-+... +..
T Consensus 92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~ 170 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSG 170 (420)
T ss_pred eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCC
Confidence 6899999999999999999999998742 1211 1122356889999996655544 45568999976321 111
Q ss_pred ccc--------cccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 73 SDR--------FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 73 ~~~--------~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
... |..+|.-.+..+- ..++.+|++++.|..|.+|+++ ++.++.+..... .-...++||+|+++++++.
T Consensus 171 ~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~-~n~~aavSP~GRFia~~gF 248 (420)
T KOG2096|consen 171 SHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGF 248 (420)
T ss_pred CcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc-cccceeeCCCCcEEEEecC
Confidence 111 1111222233333 4567899999999999999997 888888866544 4677899999999999998
Q ss_pred cccccC
Q 031924 144 SLNVNP 149 (150)
Q Consensus 144 ~~~v~~ 149 (150)
.-.|.+
T Consensus 249 TpDVkV 254 (420)
T KOG2096|consen 249 TPDVKV 254 (420)
T ss_pred CCCceE
Confidence 777653
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-16 Score=99.87 Aligned_cols=142 Identities=18% Similarity=0.128 Sum_probs=111.0
Q ss_pred eec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC---CCEEEeecCCCeEEEEEccccccccccccc
Q 031924 3 FAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN---GRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 3 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
|-| |.-.+.+++.|.++++||..+-+....++ .++.|.+-+++|- ...+++|..+-.|++.|+. .+...+.+.+
T Consensus 109 WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~LsG 186 (397)
T KOG4283|consen 109 WYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHTLSG 186 (397)
T ss_pred EeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceeeecc
Confidence 555 55677788899999999999876554443 5677888888874 5577889999999999995 6788999999
Q ss_pred ccccceeEee-ecCC-CEEEEecCCCcEEEEeccCC-eeeeec--------------cCCCCcceeEEEEcCCccEEEec
Q 031924 79 LSPNSVDALL-KLDE-DRVITGSENGLISLVGILPN-RIIQPI--------------AEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~-~~l~~~~~dg~i~~~d~~~~-~~~~~~--------------~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
|...|.++. +|.. -.|++|+.||.|++||++.. .++..+ .+|.+ .+..++|+.++.+++++
T Consensus 187 -Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~g-kvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 187 -HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYG-KVNGLAWTSDARYLASC 264 (397)
T ss_pred -ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccc-eeeeeeecccchhhhhc
Confidence 999999887 6654 46788999999999999753 233322 24555 49999999999999999
Q ss_pred ccccccc
Q 031924 142 FLSLNVN 148 (150)
Q Consensus 142 ~~~~~v~ 148 (150)
+.+..+.
T Consensus 265 gtd~r~r 271 (397)
T KOG4283|consen 265 GTDDRIR 271 (397)
T ss_pred cCccceE
Confidence 9876543
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=105.57 Aligned_cols=143 Identities=14% Similarity=0.226 Sum_probs=116.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee----ee-------------e-ccCCCcEEEEEEEeCCCEEEeecCCCeEE
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TR-------------S-EFSEEELTSVVLMKNGRKVVCGSQSGTVL 62 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~-------------~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 62 (150)
|+++|+.++.++++.+++|.-|++.+++.. .+ . +.|...+.+++.++||++|++|+.|..+.
T Consensus 148 vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~ 227 (479)
T KOG0299|consen 148 VALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQ 227 (479)
T ss_pred EEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEE
Confidence 467899999999999999999999887632 11 1 25667899999999999999999999999
Q ss_pred EEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 63 LYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 63 i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
||+.+ ..+.++.+++ |.+.|.+++ ......+++++.|+.+++|++.....+.++-+|.+ .|..+.....++.+..|
T Consensus 228 Iw~~~-t~ehv~~~~g-hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~IdaL~reR~vtVG 304 (479)
T KOG0299|consen 228 IWDCD-TLEHVKVFKG-HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGIDALSRERCVTVG 304 (479)
T ss_pred EecCc-ccchhhcccc-cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeechhcccceEEec
Confidence 99986 4477778899 999999998 44557899999999999999987777777778887 47777776667666666
Q ss_pred ccccc
Q 031924 142 FLSLN 146 (150)
Q Consensus 142 ~~~~~ 146 (150)
+.+..
T Consensus 305 grDrT 309 (479)
T KOG0299|consen 305 GRDRT 309 (479)
T ss_pred cccce
Confidence 55543
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.7e-17 Score=103.94 Aligned_cols=137 Identities=10% Similarity=0.094 Sum_probs=100.9
Q ss_pred ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc------------------
Q 031924 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF------------------ 69 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~------------------ 69 (150)
..+++|+.||.|++||+.+.+++..++.|.+.|..+++.. ..++++++|.+|+.|-+...
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccc
Confidence 5788999999999999999999999999999999999987 56788889999999974211
Q ss_pred --------c-----------ccccccccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeee-----------
Q 031924 70 --------K-----------DCSDRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQP----------- 117 (150)
Q Consensus 70 --------~-----------~~~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~----------- 117 (150)
| ..++.+.. ....+.++. +| ....|+++.+|+.|.+||++.+.+++.
T Consensus 158 ~~~~FaTcGe~i~IWD~~R~~Pv~smsw-G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Is 236 (433)
T KOG0268|consen 158 KNSVFATCGEQIDIWDEQRDNPVSSMSW-GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTIC 236 (433)
T ss_pred ccccccccCceeeecccccCCccceeec-CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccccee
Confidence 1 11222222 233445555 34 345778888999999999887654443
Q ss_pred -------------------------------ccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 118 -------------------------------IAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 118 -------------------------------~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...|.. .|.+++|||.|+-+++||.+-.|.
T Consensus 237 wnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs-AV~dVdfsptG~EfvsgsyDksIR 297 (433)
T KOG0268|consen 237 WNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIR 297 (433)
T ss_pred cCccccceeeccccccceehhhhhhcccchhhcccce-eEEEeccCCCcchhccccccceEE
Confidence 223444 488899999999999999876653
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=100.06 Aligned_cols=138 Identities=11% Similarity=0.133 Sum_probs=107.4
Q ss_pred eEEEEcCCCeEEEEEcCCCe----------eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-ccc--ccc
Q 031924 9 KLLGTSGDGTLSVCNLRKNT----------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-KDC--SDR 75 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~--~~~ 75 (150)
++++|-++|++.+||+..+. .......|..++.++.+.+.-..=++|+.+..+.+|++... +.+ -..
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 45566789999999999873 33445678889999999876555678888889999987532 111 111
Q ss_pred cccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
..- ....+..+. .+|++.+++++.|++||+|+.++.+++..++.|.+ .|++++|+|+..++|.++.+..|.
T Consensus 247 ~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-gvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 247 ITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-GVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred EEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-ceeEEEeCCCCchhhhccCCceEE
Confidence 122 223344444 88999999999999999999999999999999988 699999999999999999887663
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.3e-16 Score=98.80 Aligned_cols=145 Identities=12% Similarity=0.111 Sum_probs=103.1
Q ss_pred eeecC-cceEEEEcCCCeEEEEEcCCCeeeeee---ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc--------
Q 031924 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-------- 69 (150)
Q Consensus 2 ~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-------- 69 (150)
.+.|+ .+++++++.|..|++|++++..++..+ .+|.+.|.++.|+++|.++++++.|.++++|++...
T Consensus 142 k~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~ 221 (385)
T KOG1034|consen 142 KFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL 221 (385)
T ss_pred hcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhh
Confidence 46675 468889999999999999999887554 688999999999999999999999999999998621
Q ss_pred ---------------------------------------------------------cccccc---cccccccc------
Q 031924 70 ---------------------------------------------------------KDCSDR---FVGLSPNS------ 83 (150)
Q Consensus 70 ---------------------------------------------------------~~~~~~---~~~~~~~~------ 83 (150)
++.... .+. .+..
T Consensus 222 s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp-~es~~Ti~~~ 300 (385)
T KOG1034|consen 222 SITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKP-PESATTILGE 300 (385)
T ss_pred hcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCC-CccceeeeeE
Confidence 000000 000 0000
Q ss_pred -------eeEe---eecCCCEEEEecCCCcEEEEeccCCeee--eeccCC-CCcceeEEEEcCCccEEEeccccccc
Q 031924 84 -------VDAL---LKLDEDRVITGSENGLISLVGILPNRII--QPIAEH-SEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 84 -------v~~~---~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~~~~~-~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+-.+ ..+-++.|+.|.+.|.+++||++..++. .++..+ .+..|+..+|+.||.+|+..+.++.|
T Consensus 301 ~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~V 377 (385)
T KOG1034|consen 301 FDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTV 377 (385)
T ss_pred eccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcE
Confidence 0001 1233457889999999999999876542 122111 12359999999999999988877765
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-16 Score=98.10 Aligned_cols=144 Identities=15% Similarity=0.176 Sum_probs=109.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCee-eeeec-----cCCCcEEEEEEEe--CCCEEEeecCCCeEEEEEccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSE-----FSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDC 72 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~~~~ 72 (150)
+.|.|++..+++- .|+.|.+|+++.+.. ...+. .+....++-+|+| +++.+++. .|++++.||.++. ++
T Consensus 129 vew~Pns~klasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~-~~ 205 (370)
T KOG1007|consen 129 VEWEPNSDKLASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTM-KK 205 (370)
T ss_pred EEEcCCCCeeEEe-ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccch-hh
Confidence 4688999988887 588999999988654 32222 2455788899999 47766665 7889999999854 44
Q ss_pred ccccccccccceeEee-ecCC-CEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCC-ccEEEecccccccc
Q 031924 73 SDRFVGLSPNSVDALL-KLDE-DRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASV-LCFINSGFLSLNVN 148 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~-~~~~-~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~~~~v~ 148 (150)
...+..+|...+..+. +|+. .+|++++.||.|++||.+. ..+++.+..|.-. +.+++|+|. .+++.+|+.+-.|+
T Consensus 206 ~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW-vW~VRfn~~hdqLiLs~~SDs~V~ 284 (370)
T KOG1007|consen 206 NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW-VWAVRFNPEHDQLILSGGSDSAVN 284 (370)
T ss_pred hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE-EEEEEecCccceEEEecCCCceeE
Confidence 4444433888888887 5544 4788899999999999986 4478889888875 999999994 56788888877665
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-16 Score=106.49 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=104.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeee--eccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccc------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD------ 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~------ 71 (150)
+.|-|....|+++++|.++++||+++.+.... ..+|.+.+.+++|+|. ...|++|+.||.+.|||++..+.
T Consensus 106 l~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~ 185 (720)
T KOG0321|consen 106 LKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEF 185 (720)
T ss_pred eccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHH
Confidence 35778667899999999999999999887755 7899999999999996 45678999999999999875420
Q ss_pred -------------c-------cccccccccc----ceeEeeecCCCEEEEecC-CCcEEEEeccCCeeee------e--c
Q 031924 72 -------------C-------SDRFVGLSPN----SVDALLKLDEDRVITGSE-NGLISLVGILPNRIIQ------P--I 118 (150)
Q Consensus 72 -------------~-------~~~~~~~~~~----~v~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~------~--~ 118 (150)
. +.+-+. +.. .|+.+...|...|++++. |+.|+|||++...... . +
T Consensus 186 ~~~~~~~~n~~ptpskp~~kr~~k~kA-~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~ 264 (720)
T KOG0321|consen 186 DNRIYGRHNTAPTPSKPLKKRIRKWKA-ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKY 264 (720)
T ss_pred hhhhhccccCCCCCCchhhcccccccc-ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCc
Confidence 0 000011 122 244455778899999887 9999999998643221 1 1
Q ss_pred cCCC--CcceeEEEEcCCccEEEeccccccc
Q 031924 119 AEHS--EYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 119 ~~~~--~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
..|. ...+.++..+..|.+|...+.+..|
T Consensus 265 ~t~skrs~G~~nL~lDssGt~L~AsCtD~sI 295 (720)
T KOG0321|consen 265 PTHSKRSVGQVNLILDSSGTYLFASCTDNSI 295 (720)
T ss_pred cCcccceeeeEEEEecCCCCeEEEEecCCcE
Confidence 2221 1247778888888876666667665
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-15 Score=95.50 Aligned_cols=139 Identities=13% Similarity=0.166 Sum_probs=110.5
Q ss_pred CcceEEEEcCCCeEEEEEcCCCe---eeeeec--cCCCcEEEEEEEeC----CCEEEeecCCCeEEEEEccccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNT---VQTRSE--FSEEELTSVVLMKN----GRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~--~~~~~v~~~~~~~~----~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
+...+++..+.+.+.+|.....- .++... .+++....++|+-+ ..++++++.-|.|++.|+. .+++...+
T Consensus 53 ~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~-~~~~~~~~ 131 (385)
T KOG1034|consen 53 DEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVV-SGQCSKNY 131 (385)
T ss_pred CCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecc-hhhhccce
Confidence 34455555577799999887632 222222 35667788889865 4578899999999999985 56888889
Q ss_pred ccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeecc---CCCCcceeEEEEcCCccEEEeccccccc
Q 031924 77 VGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIA---EHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
.+ |...|..+. .| +.+++++++.|..||+|++++..++..+. .|.+ .|.++.|+++|.+|++|+++..+
T Consensus 132 ~g-hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd-eVLSvD~~~~gd~i~ScGmDhsl 205 (385)
T KOG1034|consen 132 RG-HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD-EVLSVDFSLDGDRIASCGMDHSL 205 (385)
T ss_pred ec-cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC-cEEEEEEcCCCCeeeccCCcceE
Confidence 99 999999887 44 55799999999999999999999888774 6777 59999999999999999998654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.8e-16 Score=98.91 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=114.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEc-CCCee--eee-----eccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNL-RKNTV--QTR-----SEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~-~~~~~--~~~-----~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
++|+|||.+|++| ....|++||+ +.|+. ... -.+..+.+.+++|+|. .+.+++|++...+-||... ...
T Consensus 164 L~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-~~~ 241 (406)
T KOG2919|consen 164 LQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-GRR 241 (406)
T ss_pred EEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC-CCC
Confidence 5799999999988 6679999999 44532 111 2234678999999996 4588999999999999864 456
Q ss_pred cccccccccccceeEee-ecCCCEEEEecC-CCcEEEEeccC-CeeeeeccCCCCcceeEEEE--cCCccEEEecccccc
Q 031924 72 CSDRFVGLSPNSVDALL-KLDEDRVITGSE-NGLISLVGILP-NRIIQPIAEHSEYPIESLGI--ASVLCFINSGFLSLN 146 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~-dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~--~~~~~~l~s~~~~~~ 146 (150)
..+.+-+ |.+.|+-+. .++|+.|.+|.. |-.|..||++. +.++..+..|.+..-.++.| .|++++|++|+.+|.
T Consensus 242 pl~llgg-h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~ 320 (406)
T KOG2919|consen 242 PLQLLGG-HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGS 320 (406)
T ss_pred ceeeecc-cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCcc
Confidence 7777778 999999988 889999999885 67999999985 44666776666533455555 589999999999999
Q ss_pred ccC
Q 031924 147 VNP 149 (150)
Q Consensus 147 v~~ 149 (150)
|++
T Consensus 321 V~v 323 (406)
T KOG2919|consen 321 VRV 323 (406)
T ss_pred EEE
Confidence 875
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.8e-16 Score=102.48 Aligned_cols=146 Identities=8% Similarity=0.026 Sum_probs=108.4
Q ss_pred CeeecCc--ceEEEEcCCCeEEEEEcCCCe----eeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccc----
Q 031924 1 MTFAADA--MKLLGTSGDGTLSVCNLRKNT----VQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYF---- 69 (150)
Q Consensus 1 i~~~~~~--~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~---- 69 (150)
++|+|.. +.+++|...|+|-+||+.+.+ -+.....|..+|.++.|+|. -..+++.++||+|++-|++..
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~ 271 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE 271 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHH
Confidence 5788853 588888899999999995322 34566788999999999995 567889999999999887532
Q ss_pred ----------------------------------------cccccccccccccceeEee-ec-CCCEEEEecCCCcEEEE
Q 031924 70 ----------------------------------------KDCSDRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLV 107 (150)
Q Consensus 70 ----------------------------------------~~~~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~ 107 (150)
+.....+.- |...|..+. +| ...++++++.|++.++|
T Consensus 272 v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l-h~kKI~sv~~NP~~p~~laT~s~D~T~kIW 350 (498)
T KOG4328|consen 272 VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL-HKKKITSVALNPVCPWFLATASLDQTAKIW 350 (498)
T ss_pred HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh-hhcccceeecCCCCchheeecccCcceeee
Confidence 111122223 555677776 55 45689999999999999
Q ss_pred eccCCe-----eeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 108 GILPNR-----IIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 108 d~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
|++.-. .+..+ .|.. +|.++.|||.+--|++.+.+..|..
T Consensus 351 D~R~l~~K~sp~lst~-~Hrr-sV~sAyFSPs~gtl~TT~~D~~IRv 395 (498)
T KOG4328|consen 351 DLRQLRGKASPFLSTL-PHRR-SVNSAYFSPSGGTLLTTCQDNEIRV 395 (498)
T ss_pred ehhhhcCCCCcceecc-cccc-eeeeeEEcCCCCceEeeccCCceEE
Confidence 997522 13333 6766 6999999998777999888887764
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=108.00 Aligned_cols=86 Identities=20% Similarity=0.253 Sum_probs=76.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+||+++|++.+.||.++|||..+.+.+...+..-+.+.|++|+|||+++++|+.|.-|.||.+. ..+.+.+-.+ |
T Consensus 296 f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~-erRVVARGqG-H 373 (636)
T KOG2394|consen 296 FAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE-ERRVVARGQG-H 373 (636)
T ss_pred eeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec-cceEEEeccc-c
Confidence 4799999999999999999999999988887777788899999999999999999999999999985 4577777778 8
Q ss_pred ccceeEee
Q 031924 81 PNSVDALL 88 (150)
Q Consensus 81 ~~~v~~~~ 88 (150)
..+|..++
T Consensus 374 kSWVs~Va 381 (636)
T KOG2394|consen 374 KSWVSVVA 381 (636)
T ss_pred ccceeeEe
Confidence 88877654
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-14 Score=92.68 Aligned_cols=71 Identities=6% Similarity=0.084 Sum_probs=54.8
Q ss_pred ccccccccceeEee-ecC-C---CEEEEecCCCcEEEEeccCC--------------------eeeeeccCCCCcceeEE
Q 031924 75 RFVGLSPNSVDALL-KLD-E---DRVITGSENGLISLVGILPN--------------------RIIQPIAEHSEYPIESL 129 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~-~---~~l~~~~~dg~i~~~d~~~~--------------------~~~~~~~~~~~~~i~~~ 129 (150)
++.+ |+.+|+.+. .|+ | .+|++++.|| |++|.+... +.+..+..|.+ .|.++
T Consensus 218 ~L~d-~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv 294 (361)
T KOG2445|consen 218 ELPD-HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRV 294 (361)
T ss_pred hcCC-CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEE
Confidence 3446 778888887 442 3 3889999999 999998631 13344567888 59999
Q ss_pred EEcCCccEEEecccccccc
Q 031924 130 GIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 130 ~~~~~~~~l~s~~~~~~v~ 148 (150)
.|+-.|..|++.|.+|.|.
T Consensus 295 ~wNmtGtiLsStGdDG~VR 313 (361)
T KOG2445|consen 295 RWNMTGTILSSTGDDGCVR 313 (361)
T ss_pred EEeeeeeEEeecCCCceee
Confidence 9999999999999999875
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=96.63 Aligned_cols=148 Identities=9% Similarity=0.071 Sum_probs=119.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe---eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc--
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR-- 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-- 75 (150)
.+|++|...++.+.....|.||...... ....+..|...+++++|+|..+.|++++.|..-++|.....+....+
T Consensus 16 hAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptlv 95 (361)
T KOG1523|consen 16 HAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLV 95 (361)
T ss_pred eeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecccee
Confidence 3799999999999999999999987754 56788899999999999999999999999999999998444433222
Q ss_pred cccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeee---e-eccCCCCcceeEEEEcCCccEEEeccccccccCC
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRII---Q-PIAEHSEYPIESLGIASVLCFINSGFLSLNVNPL 150 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~---~-~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~~ 150 (150)
+.. +....+++. +|+++.|++|+.-..|.+|-.+....- + .-..+.. .|.+++|+|++-+++.|+.++...+|
T Consensus 96 LlR-iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirS-tv~sldWhpnnVLlaaGs~D~k~rVf 173 (361)
T KOG1523|consen 96 LLR-INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRS-TVTSLDWHPNNVLLAAGSTDGKCRVF 173 (361)
T ss_pred EEE-eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcccc-ceeeeeccCCcceecccccCcceeEE
Confidence 234 567788887 999999999999999999987654322 1 1123344 59999999999999999999887653
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=100.25 Aligned_cols=138 Identities=12% Similarity=0.067 Sum_probs=114.7
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc------cc-----------
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG------YF----------- 69 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~------~~----------- 69 (150)
...+.+++.|.+-+||.+++++++....+|.+.|++++|++.+..+++++.|++-.||... ..
T Consensus 160 qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE 239 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE 239 (481)
T ss_pred CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence 3467788999999999999999999999999999999999999999999999999999621 10
Q ss_pred ----------------------cccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcce
Q 031924 70 ----------------------KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI 126 (150)
Q Consensus 70 ----------------------~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i 126 (150)
...+..+++ |...+.+.. -..++.+++++.|.+..+||++++++++.+.+|... .
T Consensus 240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E-L 317 (481)
T KOG0300|consen 240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSE-L 317 (481)
T ss_pred hhcccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchh-c
Confidence 011223455 666666555 446789999999999999999999999999999884 8
Q ss_pred eEEEEcCCccEEEecccccc
Q 031924 127 ESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 127 ~~~~~~~~~~~l~s~~~~~~ 146 (150)
+.++-+|..+++++.+.+..
T Consensus 318 tHcstHptQrLVvTsSrDtT 337 (481)
T KOG0300|consen 318 THCSTHPTQRLVVTSSRDTT 337 (481)
T ss_pred cccccCCcceEEEEeccCce
Confidence 88899999999999887643
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-15 Score=105.81 Aligned_cols=143 Identities=12% Similarity=0.052 Sum_probs=117.5
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccc
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 83 (150)
...++.+++++.+++|.+|....++....+...+-++++++++-+|++++.|+.|-.|++.++. .......+.+ |..+
T Consensus 63 a~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~-D~s~~~~lrg-h~ap 140 (933)
T KOG1274|consen 63 ACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD-DSSQEKVLRG-HDAP 140 (933)
T ss_pred eecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc-ccchheeecc-cCCc
Confidence 3456789999999999999999887665666667789999999999999999999999999985 3456677788 9999
Q ss_pred eeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCC------C-CcceeEEEEcCCccEEEecccccccc
Q 031924 84 VDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEH------S-EYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------~-~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|.++. +|++++|++.+.||.|++||+.++.+...+..- . ...+..++|+|+|..++.-+.+..|.
T Consensus 141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vk 213 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVK 213 (933)
T ss_pred eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEE
Confidence 99999 999999999999999999999988766555321 1 22478899999977777666666654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-15 Score=102.18 Aligned_cols=65 Identities=18% Similarity=0.347 Sum_probs=60.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~ 66 (150)
++|-|||..++.+. +..+.+||...|..+..+++|.+.|.+++|+.||+.|++|+.|..+.+|+.
T Consensus 18 ~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~ 82 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTS 82 (1081)
T ss_pred eEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecc
Confidence 57999999999884 458999999999999999999999999999999999999999999999985
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-15 Score=100.64 Aligned_cols=130 Identities=12% Similarity=0.230 Sum_probs=101.2
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCC--------------e--------------eeeeeccCCCcEEEEEEEeCCCE
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKN--------------T--------------VQTRSEFSEEELTSVVLMKNGRK 51 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~--------------~--------------~~~~~~~~~~~v~~~~~~~~~~~ 51 (150)
+.|-|. ...++.+..+|.+.+||.+-- . ++.....-++.++..+|+|||++
T Consensus 225 ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~ 304 (636)
T KOG2394|consen 225 IKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKY 304 (636)
T ss_pred EEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCce
Confidence 356663 456666778999999975320 0 11122222457889999999999
Q ss_pred EEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEE
Q 031924 52 VVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLG 130 (150)
Q Consensus 52 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~ 130 (150)
|++.++||.++|||+. ..+....++. .-....|++ +|||++|++|++|.-|.||.+..++.+..=++|..+ |+.++
T Consensus 305 LA~VSqDGfLRvF~fd-t~eLlg~mkS-YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSW-Vs~Va 381 (636)
T KOG2394|consen 305 LATVSQDGFLRIFDFD-TQELLGVMKS-YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSW-VSVVA 381 (636)
T ss_pred EEEEecCceEEEeecc-HHHHHHHHHh-hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccc-eeeEe
Confidence 9999999999999985 3355566665 455677777 999999999999999999999999999888899996 99999
Q ss_pred EcC
Q 031924 131 IAS 133 (150)
Q Consensus 131 ~~~ 133 (150)
|+|
T Consensus 382 FDp 384 (636)
T KOG2394|consen 382 FDP 384 (636)
T ss_pred ecc
Confidence 996
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-16 Score=101.37 Aligned_cols=144 Identities=14% Similarity=0.098 Sum_probs=112.1
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
.|-++...|++++.|..|++|+...++ .+..+.+..+.++.+.|.+++..+++++.|+.+++|++. ..+...++.+
T Consensus 182 ~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd-~~r~~~TLsG- 259 (459)
T KOG0288|consen 182 EFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD-SLRLRHTLSG- 259 (459)
T ss_pred EEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc-chhhhhhhcc-
Confidence 466777899999999999999998776 566777888899999999999999999999999999986 4477778888
Q ss_pred cccceeEeeecCC----------------------------------------CEEEEecCCCcEEEEeccCCeeeeecc
Q 031924 80 SPNSVDALLKLDE----------------------------------------DRVITGSENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 80 ~~~~v~~~~~~~~----------------------------------------~~l~~~~~dg~i~~~d~~~~~~~~~~~ 119 (150)
|.+.+++.....+ ..+++|..|+.|++||+++..+...++
T Consensus 260 HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~ 339 (459)
T KOG0288|consen 260 HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVP 339 (459)
T ss_pred cccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEee
Confidence 8777776431111 134556666777777777666666665
Q ss_pred CCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 120 EHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 120 ~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
.+ + .|+++..++++..+.+++.+-+++.
T Consensus 340 ~g-g-~vtSl~ls~~g~~lLsssRDdtl~v 367 (459)
T KOG0288|consen 340 LG-G-RVTSLDLSMDGLELLSSSRDDTLKV 367 (459)
T ss_pred cC-c-ceeeEeeccCCeEEeeecCCCceee
Confidence 54 3 4999999999999998887766653
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-14 Score=98.97 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=111.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccc--cccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD--RFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~--~~~~ 78 (150)
++|. ++..|++.+.+|.|.-||+.+.+.........+.+.+++.+|.+..++.|+.||.+..++.. .++... .+.-
T Consensus 75 L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~-p~~I~~~r~l~r 152 (691)
T KOG2048|consen 75 LAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG-PDKITYKRSLMR 152 (691)
T ss_pred EEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecC-CceEEEEeeccc
Confidence 4677 55677788899999999999999999888888999999999999999999999977777764 333222 2223
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec-----cCCC--CcceeEEEEcCCccEEEecccccccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI-----AEHS--EYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-----~~~~--~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+++++.++. .+++..++.|+.||.|++||..++..+... .... ..-|.++.|-.++ .|++|...|.|.
T Consensus 153 -q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~ 228 (691)
T KOG2048|consen 153 -QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVT 228 (691)
T ss_pred -ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEE
Confidence 567888888 788888999999999999999988766622 1111 1127777777555 678888888764
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.7e-15 Score=102.48 Aligned_cols=146 Identities=12% Similarity=0.043 Sum_probs=111.4
Q ss_pred CeeecCcceEEEEcCC-----CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc
Q 031924 1 MTFAADAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
++.+|+++++++++.. ..|++|+..+......+++|.-.|+.++|+|||++|++.+.|.++.+|...........
T Consensus 531 l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 531 LAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR 610 (764)
T ss_pred EEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh
Confidence 3678999999998754 45889999988888889999999999999999999999999999999987433222222
Q ss_pred ---cccccccceeEee-ecCCCEEEEecCCCcEEEEeccCC--eeeee--ccCCCCcceeEEEEcC-----CccEEEecc
Q 031924 76 ---FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPN--RIIQP--IAEHSEYPIESLGIAS-----VLCFINSGF 142 (150)
Q Consensus 76 ---~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~--~~~~~~~~i~~~~~~~-----~~~~l~s~~ 142 (150)
.+. |..-|-.+. +|++.++++++.|..|++|..... +.+.. ...+.. +|+.+++.| .+..++.|-
T Consensus 611 fa~~k~-HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~-aVTAv~~~~~~~~e~~~~vavGl 688 (764)
T KOG1063|consen 611 FACLKA-HTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSL-AVTAVAYLPVDHNEKGDVVAVGL 688 (764)
T ss_pred hccccc-cceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCC-ceeeEEeeccccccccceEEEEe
Confidence 345 766666666 899999999999999999988665 33322 224445 699998876 223667776
Q ss_pred cccccc
Q 031924 143 LSLNVN 148 (150)
Q Consensus 143 ~~~~v~ 148 (150)
..|.|.
T Consensus 689 e~GeI~ 694 (764)
T KOG1063|consen 689 EKGEIV 694 (764)
T ss_pred cccEEE
Confidence 676653
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.7e-16 Score=106.23 Aligned_cols=142 Identities=10% Similarity=0.119 Sum_probs=110.7
Q ss_pred CcceEEE--EcCCCeEEEEEcCC-Ceee-eeec--cCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEccccc------cc
Q 031924 6 DAMKLLG--TSGDGTLSVCNLRK-NTVQ-TRSE--FSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK------DC 72 (150)
Q Consensus 6 ~~~~l~~--~~~d~~i~i~d~~~-~~~~-~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~------~~ 72 (150)
+.+.+++ .+..|.|.||+++. |+.- ..+. .....|+++.|.| |...|++++.||.|++|.+...+ ..
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP 669 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP 669 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc
Confidence 4444544 35578999999976 3321 1111 1245799999999 67889999999999999986443 22
Q ss_pred ccccccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 73 SDRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
...++. |...|+++- +| -.+.|++++.|.+|++||+.+++....+..|.+ .|..++|||||+.+|+-+-++.+.+
T Consensus 670 e~~lt~-h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd-qIf~~AWSpdGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 670 EKILTI-HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD-QIFGIAWSPDGRRIATVCKDGTLRV 746 (1012)
T ss_pred ceeeec-ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC-ceeEEEECCCCcceeeeecCceEEE
Confidence 334556 888899887 44 567999999999999999999998888999999 4999999999999999999988764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=9e-14 Score=91.28 Aligned_cols=141 Identities=13% Similarity=0.097 Sum_probs=99.1
Q ss_pred CeeecCcceE-EEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++|+|+++.+ ++++.++.|++||..+++....+..+. .+..++|+|+++.++++ ..++.+++||++. .+.+..+..
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~~ 113 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAEIPV 113 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeEeeC
Confidence 4689999876 456788999999999987766665443 35678999999877654 5689999999864 344455543
Q ss_pred ccccceeEee-ecCCCEEEEecCCC-cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEE-eccccccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFIN-SGFLSLNV 147 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~~~~v 147 (150)
. ..+..+. +++++.++++..++ .+..||..+++....+... . .+..++|+|++++++ ++..++.|
T Consensus 114 -~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~~v 181 (300)
T TIGR03866 114 -G-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-Q-RPRFAEFTADGKELWVSSEIGGTV 181 (300)
T ss_pred -C-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-C-CccEEEECCCCCEEEEEcCCCCEE
Confidence 2 2234555 88999999888765 5677898877765544322 3 367799999999875 44344443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-15 Score=100.57 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=95.4
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
.|+|||.-|+++++||.|++|.- +|-....+.-...+|.|++|.|+.+.++-+ ..+.+.+=-+.. ....-+.+. |.
T Consensus 111 RW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~-n~k~i~WkA-HD 186 (737)
T KOG1524|consen 111 RWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAA-NSKIIRWRA-HD 186 (737)
T ss_pred ccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeeccc-ccceeEEec-cC
Confidence 58999999999999999999984 443333444556799999999986655443 334555544432 233345667 99
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
+-|.++. ++..+++++|++|-..++||.. ++.+..-..|+- ||++++|+|+ +.++.+|
T Consensus 187 GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey-~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 187 GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY-AITSVAFNPE-KDYLLWS 245 (737)
T ss_pred cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc-ceeeeeeccc-cceeeee
Confidence 9999988 8889999999999999999984 445555545544 6777666666 4444443
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-14 Score=90.95 Aligned_cols=135 Identities=13% Similarity=0.146 Sum_probs=102.8
Q ss_pred CcceEEEEcCCCeEEEEEcCCCe---eeeeeccCCCcEEEEEEEeCC-CEEEeecCCCeEEEEEcccc------------
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYF------------ 69 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~------------ 69 (150)
+.++|.+++-|.+..|||++++. ....+..|..+|..++|...+ +.|++.+.||.+|+||++..
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~ 241 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP 241 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence 56789999999999999999973 356777899999999999864 46789999999999999743
Q ss_pred -----------------------------------cccccccccccccceeEee-e-cCCCEEEEecCCCcEEEEeccCC
Q 031924 70 -----------------------------------KDCSDRFVGLSPNSVDALL-K-LDEDRVITGSENGLISLVGILPN 112 (150)
Q Consensus 70 -----------------------------------~~~~~~~~~~~~~~v~~~~-~-~~~~~l~~~~~dg~i~~~d~~~~ 112 (150)
...+.++.+ |...|..+. . .....|++++.|..+.+||+...
T Consensus 242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~-H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN-HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc-CcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 122335557 888888887 3 36679999999999999999642
Q ss_pred e------eeeeccCCCCcceeEEEEcC-CccEEEeccc
Q 031924 113 R------IIQPIAEHSEYPIESLGIAS-VLCFINSGFL 143 (150)
Q Consensus 113 ~------~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~ 143 (150)
. ++-.+. ... .|+.+.|++ .+..++.+..
T Consensus 321 ~~~~~~dPilay~-a~~-EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 321 PRENGEDPILAYT-AGG-EVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred cccCCCCchhhhh-ccc-eeeeeeecccCCCEEEEEec
Confidence 1 222222 223 499999995 5677776653
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-14 Score=91.96 Aligned_cols=141 Identities=14% Similarity=0.152 Sum_probs=109.7
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccC---CCcEEEEEEEeCCCEEEeec--CCCeEEEEEccccccccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS---EEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.+.|+++-.+ .|.|||++..+.+..+... ...+.++.+++.+.+++--+ ..|.|.+||..+ -+....+.. |
T Consensus 96 Nr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~a-H 172 (391)
T KOG2110|consen 96 NRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINA-H 172 (391)
T ss_pred ccceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEe-c
Confidence 44567676555 5999999999988777644 33455666666677887433 459999999853 366677777 9
Q ss_pred ccceeEee-ecCCCEEEEecCCC-cEEEEeccCCeeeeeccCCCC-cceeEEEEcCCccEEEeccccccccC
Q 031924 81 PNSVDALL-KLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSE-YPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
.+.+.+++ +++|.+|++++..| .||++.+.+++.+..+..... ..|.+++|+|++++|+..|.+..|..
T Consensus 173 ~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHi 244 (391)
T KOG2110|consen 173 KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHI 244 (391)
T ss_pred CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEE
Confidence 99999999 99999999999998 589999999998888854332 24889999999999999998877753
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=99.00 Aligned_cols=146 Identities=22% Similarity=0.291 Sum_probs=111.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCC--------eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc---
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~--- 69 (150)
++|.|....|++++.|+.+++|++++. +++..+.+|+++|.|+++.+++..+++|+.||+|+.|++...
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence 357788889999999999999999431 356788999999999999999999999999999999954311
Q ss_pred ------cccccccccccc--------------------------------------------------------------
Q 031924 70 ------KDCSDRFVGLSP-------------------------------------------------------------- 81 (150)
Q Consensus 70 ------~~~~~~~~~~~~-------------------------------------------------------------- 81 (150)
......+.| |.
T Consensus 380 ~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s 458 (577)
T KOG0642|consen 380 DDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLAS 458 (577)
T ss_pred ccccCcchhccceec-cccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhh
Confidence 000000001 11
Q ss_pred -------------------------------cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEE
Q 031924 82 -------------------------------NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129 (150)
Q Consensus 82 -------------------------------~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~ 129 (150)
..+..+. .++..+.+++..|+.|+++|..+++.+....+|.. .++++
T Consensus 459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~-svtsl 537 (577)
T KOG0642|consen 459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD-SVTSL 537 (577)
T ss_pred cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccc-eecce
Confidence 1122333 55667788888888888888888888888888888 59999
Q ss_pred EEcCCccEEEecccccccc
Q 031924 130 GIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 130 ~~~~~~~~l~s~~~~~~v~ 148 (150)
++.|+|-+|++++.++.+.
T Consensus 538 ai~~ng~~l~s~s~d~sv~ 556 (577)
T KOG0642|consen 538 AIDPNGPYLMSGSHDGSVR 556 (577)
T ss_pred eecCCCceEEeecCCceee
Confidence 9999999999999887663
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-14 Score=95.92 Aligned_cols=144 Identities=10% Similarity=0.108 Sum_probs=112.4
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccC-CCcEEEEEEEeCCCEE-EeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
.|+....+|++++..|.|.+..+.++.....+... ...+.-+.|+|..+++ .+++.+|.|.+||+... ..+..+...
T Consensus 128 ~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~-sp~~~~~~~ 206 (673)
T KOG4378|consen 128 DYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM-SPIFHASEA 206 (673)
T ss_pred EecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC-Ccccchhhh
Confidence 46667889999999999999999988666555544 3466789999987664 67889999999998533 444444332
Q ss_pred cccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|..+...++ +| +..+|++.+.|..|.+||++..+....+.. .. |...++|.++|.+|+.|...|.|-
T Consensus 207 HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~-Plstvaf~~~G~~L~aG~s~G~~i 275 (673)
T KOG4378|consen 207 HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SH-PLSTVAFSECGTYLCAGNSKGELI 275 (673)
T ss_pred ccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cC-CcceeeecCCceEEEeecCCceEE
Confidence 877777666 44 667889999999999999998777666643 23 799999999999999999988763
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.4e-15 Score=98.72 Aligned_cols=141 Identities=16% Similarity=0.143 Sum_probs=109.9
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccccee
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 85 (150)
...++++++..+.|+|||++...+++.+++|.+.|+++.++-...+|++++..|-|.+..+.+ +.....|.......+.
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~~~sgqsvR 168 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFTIDSGQSVR 168 (673)
T ss_pred cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-CccccceecCCCCeEE
Confidence 447899999999999999997777888999999999999999999999999999999999853 3444455430223343
Q ss_pred Eee-ec-CCCEEEEecCCCcEEEEeccCCeeeeec-cCCCCcceeEEEEcCC-ccEEEecccccccc
Q 031924 86 ALL-KL-DEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLGIASV-LCFINSGFLSLNVN 148 (150)
Q Consensus 86 ~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~-~~~l~s~~~~~~v~ 148 (150)
-+. ++ ...+|.+++.+|.|.+||.....++..+ ..|.. |...++|+|. ..+|++-+.+-.|+
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA-P~~gicfspsne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA-PCRGICFSPSNEALLVSVGYDKKIN 234 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccC-CcCcceecCCccceEEEecccceEE
Confidence 444 44 3457788899999999999877666555 45655 8999999995 46788888887665
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=92.99 Aligned_cols=93 Identities=16% Similarity=0.252 Sum_probs=81.1
Q ss_pred EEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec
Q 031924 40 LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
..|+.|++.|.+|++|+.||.+.+||+.+. .....+.+ |..+|.+++ +++|+.|++++.|..+.+||+..+.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-~iar~lsa-H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-RIARMLSA-HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc-chhhhhhc-cccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 689999999999999999999999999754 45566667 999999998 999999999999999999999999988887
Q ss_pred cCCCCcceeEEEEcCCcc
Q 031924 119 AEHSEYPIESLGIASVLC 136 (150)
Q Consensus 119 ~~~~~~~i~~~~~~~~~~ 136 (150)
. ... ||..+.|+|..+
T Consensus 104 r-f~s-pv~~~q~hp~k~ 119 (405)
T KOG1273|consen 104 R-FDS-PVWGAQWHPRKR 119 (405)
T ss_pred E-ccC-ccceeeeccccC
Confidence 4 335 788999988543
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.4e-14 Score=92.02 Aligned_cols=138 Identities=12% Similarity=0.096 Sum_probs=115.3
Q ss_pred eEEEEcCC--CeEEEEEcCCCeeeeeeccCCC---------cEEEEEEEeC--CCEEEeecCCCeEEEEEcccccccccc
Q 031924 9 KLLGTSGD--GTLSVCNLRKNTVQTRSEFSEE---------ELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 9 ~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~---------~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
.+++|+.. +.+.+||+++.+.+...+.... .++++.|-+. ...|++++.-+.+++||.+...+.+..
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 45557777 8899999999876655443221 4667888887 889999999999999999865577888
Q ss_pred cccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeee-ccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|.. -+.++.++. .|.++.+++|...+.+..+|++.++.+.. +....+ +|+++..+|.++++|+||++-.|.
T Consensus 243 fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvR 315 (412)
T KOG3881|consen 243 FDF-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVR 315 (412)
T ss_pred ecc-ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEE
Confidence 877 788899888 89999999999999999999999987766 777777 699999999999999999998775
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-13 Score=85.11 Aligned_cols=129 Identities=16% Similarity=0.217 Sum_probs=93.5
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc-c
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL-S 80 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-~ 80 (150)
-..|..+.++.+++|+.++.||+++|+....+.+|.+.+.++.--.....+.+|+.||++++||.++ ++..+.+... +
T Consensus 121 ~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~ 199 (325)
T KOG0649|consen 121 WLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEPYKN 199 (325)
T ss_pred EeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEeccccC
Confidence 3567777777777999999999999999999999999999998855566799999999999999864 4554444210 1
Q ss_pred c--------cceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCc
Q 031924 81 P--------NSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVL 135 (150)
Q Consensus 81 ~--------~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (150)
+ .+|-++ ..+..++++|+ ...+.+|++++.++.+.++. +. ++..+.|..|.
T Consensus 200 ~~~lRp~~g~wigal-a~~edWlvCGg-Gp~lslwhLrsse~t~vfpi-pa-~v~~v~F~~d~ 258 (325)
T KOG0649|consen 200 PNLLRPDWGKWIGAL-AVNEDWLVCGG-GPKLSLWHLRSSESTCVFPI-PA-RVHLVDFVDDC 258 (325)
T ss_pred hhhcCcccCceeEEE-eccCceEEecC-CCceeEEeccCCCceEEEec-cc-ceeEeeeecce
Confidence 1 223333 33456776654 56889999998887766633 23 46667765543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=95.01 Aligned_cols=140 Identities=11% Similarity=0.107 Sum_probs=106.4
Q ss_pred cceEEE---EcCCCeEEEEEcCC-Ceee---eeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccc------cc
Q 031924 7 AMKLLG---TSGDGTLSVCNLRK-NTVQ---TRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFK------DC 72 (150)
Q Consensus 7 ~~~l~~---~~~d~~i~i~d~~~-~~~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~------~~ 72 (150)
.++|+. +++.|...+.-+.. |+.- -.+-+|.+++..++|+|- ...+++|+.|.+|.+|++...+ ..
T Consensus 44 PkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltep 123 (472)
T KOG0303|consen 44 PKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEP 123 (472)
T ss_pred CceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccc
Confidence 344444 34555666655543 3322 344689999999999995 6678999999999999985432 23
Q ss_pred ccccccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 73 SDRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
...+.+ |...|-.+. +| -.+.|++++.|..|.+|+..+++.+-.+. |++. |.++.|+.||.++++.+-+-.|..
T Consensus 124 vv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~-i~S~sfn~dGs~l~TtckDKkvRv 199 (472)
T KOG0303|consen 124 VVELYG-HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDM-VYSMSFNRDGSLLCTTCKDKKVRV 199 (472)
T ss_pred eEEEee-cceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCe-EEEEEeccCCceeeeecccceeEE
Confidence 445567 888887776 44 45788999999999999999999887875 9895 999999999999999998877653
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=95.53 Aligned_cols=138 Identities=12% Similarity=0.048 Sum_probs=103.4
Q ss_pred cceEEEEcCCCeEEEEEcCCCeee---------------------eeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEE
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQ---------------------TRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLY 64 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~---------------------~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~ 64 (150)
|+++|.|..|..|.|||+.-...+ ....+|++.|.++.|+.. ...|++|+.|.+|.+|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 679999999999999997532100 112357788889999886 5678999999999999
Q ss_pred EcccccccccccccccccceeEee-e-cCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCcc-EEEe
Q 031924 65 SWGYFKDCSDRFVGLSPNSVDALL-K-LDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLC-FINS 140 (150)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~v~~~~-~-~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 140 (150)
|+. .+++...+.. |...|.++. + .....+++|+.|++|.+.|.+. ...-..++. .+ .|..++|.|... .+..
T Consensus 272 D~~-~g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-~g-~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 272 DVD-TGKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF-DG-EVEKVAWDPHSENSFFV 347 (463)
T ss_pred EcC-CCCcceehhh-cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe-cc-ceEEEEecCCCceeEEE
Confidence 996 5688888887 899999987 3 4678999999999999999984 222223322 24 399999999665 4555
Q ss_pred cccccccc
Q 031924 141 GFLSLNVN 148 (150)
Q Consensus 141 ~~~~~~v~ 148 (150)
+..+|.|.
T Consensus 348 ~tddG~v~ 355 (463)
T KOG0270|consen 348 STDDGTVY 355 (463)
T ss_pred ecCCceEE
Confidence 55566654
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-14 Score=96.81 Aligned_cols=145 Identities=15% Similarity=0.154 Sum_probs=108.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeee-ccCCCcEEEEEEEeC--CCEEEeecCCCeEEEEEcccc--------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-EFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYF-------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~-------- 69 (150)
++|+.+|.+|++|+.|-.+.|||....|.+..+ .+|...|.++.|-|. .+.+++|..|..|++||+...
T Consensus 56 LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~ 135 (758)
T KOG1310|consen 56 LEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG 135 (758)
T ss_pred eeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC
Confidence 579999999999999999999999877766554 589999999999984 667889999999999998631
Q ss_pred -cccccccccccccceeEee-ecCC-CEEEEecCCCcEEEEeccCCe-e------eeec-cCCCC-cceeEEEEcCC-cc
Q 031924 70 -KDCSDRFVGLSPNSVDALL-KLDE-DRVITGSENGLISLVGILPNR-I------IQPI-AEHSE-YPIESLGIASV-LC 136 (150)
Q Consensus 70 -~~~~~~~~~~~~~~v~~~~-~~~~-~~l~~~~~dg~i~~~d~~~~~-~------~~~~-~~~~~-~~i~~~~~~~~-~~ 136 (150)
......+.. |...|+.++ .+++ +.+.++++||+++.+|++.-. + ...+ ..+.. ....++..+|. ..
T Consensus 136 ~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~ 214 (758)
T KOG1310|consen 136 MEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPY 214 (758)
T ss_pred ccchhhhhhh-hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCc
Confidence 123334456 788888887 6655 789999999999999997522 1 1111 11111 13668899985 56
Q ss_pred EEEecccccc
Q 031924 137 FINSGFLSLN 146 (150)
Q Consensus 137 ~l~s~~~~~~ 146 (150)
+||.|+.+-.
T Consensus 215 ~laVGgsdpf 224 (758)
T KOG1310|consen 215 YLAVGGSDPF 224 (758)
T ss_pred eEEecCCCch
Confidence 7888876543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.5e-15 Score=106.69 Aligned_cols=143 Identities=10% Similarity=0.083 Sum_probs=104.4
Q ss_pred CeeecCcce----EEEEcCCCeEEEEEcCCC------eeeeeeccCCCcEEEEEEEeCC-CEEEeecCCCeEEEEEcccc
Q 031924 1 MTFAADAMK----LLGTSGDGTLSVCNLRKN------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 1 i~~~~~~~~----l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~ 69 (150)
++|.+.+.. |+.|..||.|.+||...- ..+.+...|.+.|..+.|++.+ +.|++|+.||.|.|||+...
T Consensus 70 L~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~ 149 (1049)
T KOG0307|consen 70 LAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKP 149 (1049)
T ss_pred eeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCc
Confidence 457665544 888889999999998762 1346667899999999999975 59999999999999999643
Q ss_pred ccccccccc-ccccceeEeee-c-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCC-cceeEEEEcCCc-cEEEecccc
Q 031924 70 KDCSDRFVG-LSPNSVDALLK-L-DEDRVITGSENGLISLVGILPNRIIQPIAEHSE-YPIESLGIASVL-CFINSGFLS 144 (150)
Q Consensus 70 ~~~~~~~~~-~~~~~v~~~~~-~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~-~~l~s~~~~ 144 (150)
... ..... ...+.|.++.. . ....|++++.+|.+.+||++..+.+-.+..+.. ..+..++|+|+. ..+++++.+
T Consensus 150 ~tP-~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~d 228 (1049)
T KOG0307|consen 150 ETP-FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGD 228 (1049)
T ss_pred CCC-CCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCC
Confidence 222 12211 03456778773 2 456889999999999999998877666655544 347899999976 455555543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-13 Score=90.80 Aligned_cols=142 Identities=21% Similarity=0.313 Sum_probs=110.9
Q ss_pred CeeecCcceEEEEcC-CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCC-EEEeecCCCeEEEEEccccccccc-ccc
Q 031924 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSD-RFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~-~~~ 77 (150)
+.|+|+++.++.++. ++.+++|+...++....+..|...+.+++|+|++. .+++++.|+.+++||.. .+.... .+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~~~~~~~ 239 (466)
T COG2319 161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRSTLS 239 (466)
T ss_pred EEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcEEeeecC
Confidence 468899988888875 99999999998878888888999999999999988 55555899999999875 344444 466
Q ss_pred cccccceeEeeecCCCEEEEecCCCcEEEEeccCCee-eeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 78 GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRI-IQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 78 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
+ |.........+++..+++++.|+.+++|+...... +..+..|.. .+.++.|+|++..+++++.++
T Consensus 240 ~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~ 306 (466)
T COG2319 240 G-HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSVAFSPDGKLLASGSSDG 306 (466)
T ss_pred C-CCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCc-cEEEEEECCCCCEEEEeeCCC
Confidence 6 66553113467778888999999999999986553 444445655 699999999888888877663
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=99.24 Aligned_cols=147 Identities=11% Similarity=0.115 Sum_probs=121.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.|+|...++++++.. .|++||+..++.++.+....-.+..++++|.|..|+.|+.|+.+..||+.-..+..+++.. |
T Consensus 572 v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-H 649 (733)
T KOG0650|consen 572 VKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-H 649 (733)
T ss_pred EEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh-h
Confidence 3689998999998555 8999999988777777776778999999999999999999999999999766678888888 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEecc------CC---eeeeeccCCCC---cceeEEEEcCCccEEEeccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGIL------PN---RIIQPIAEHSE---YPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~------~~---~~~~~~~~~~~---~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+..++.+. ++.=.++++|+.||++.++.-. .+ -+++.+.+|.. ..|..+.|+|..-+|.+++.++.|
T Consensus 650 ~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~ti 729 (733)
T KOG0650|consen 650 EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTI 729 (733)
T ss_pred hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceE
Confidence 99999988 6677899999999999998532 11 14566666654 348888999999999999999887
Q ss_pred cC
Q 031924 148 NP 149 (150)
Q Consensus 148 ~~ 149 (150)
..
T Consensus 730 rl 731 (733)
T KOG0650|consen 730 RL 731 (733)
T ss_pred Ee
Confidence 54
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=96.93 Aligned_cols=137 Identities=17% Similarity=0.181 Sum_probs=117.3
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeE
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~ 86 (150)
-+.++.|+.+|.+.+|++++++.+..++.+.+.|+++.-+|-=..++.|..+|+|.+++++ .++.+.+|+. ..++|+.
T Consensus 172 LNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK-~dkil~sFk~-d~g~Vts 249 (910)
T KOG1539|consen 172 LNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLK-FDKILMSFKQ-DWGRVTS 249 (910)
T ss_pred eeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcc-cCcEEEEEEc-cccceeE
Confidence 3578889999999999999999999999999999999999988889999999999999996 5688888875 3588999
Q ss_pred ee-ecCCC-EEEEecCCCcEEEEeccCCeeeeecc-CCCCcceeEEEEcCCccEEEecccccc
Q 031924 87 LL-KLDED-RVITGSENGLISLVGILPNRIIQPIA-EHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 87 ~~-~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
+. ..||+ ++++++..|.+-+||++..+....+. .|.+ ++....|-|....+++++.+..
T Consensus 250 lSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~-sv~~~~fl~~epVl~ta~~DnS 311 (910)
T KOG1539|consen 250 LSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYG-SVTGATFLPGEPVLVTAGADNS 311 (910)
T ss_pred EEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccC-CcccceecCCCceEeeccCCCc
Confidence 98 55665 66777788999999998887666654 7767 6999999999999999988744
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=105.62 Aligned_cols=145 Identities=8% Similarity=0.068 Sum_probs=116.2
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCC--CcEEEEEEEeCC-CEEEeecCC---CeEEEEEccccccccc
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE--EELTSVVLMKNG-RKVVCGSQS---GTVLLYSWGYFKDCSD 74 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~-~~l~~~~~d---~~i~i~~~~~~~~~~~ 74 (150)
+|+. ....|++++.+|...|||++..+.+..+..+. ..+..+.|+|++ +.+++++.| -.|.+||+|.-....+
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k 247 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK 247 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh
Confidence 4554 34578888899999999999988776665443 357899999984 456666544 3799999986667778
Q ss_pred ccccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc-EEEecccccccc
Q 031924 75 RFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC-FINSGFLSLNVN 148 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~~~~v~ 148 (150)
.+.+ |...|.++. .+ |.+++++++.|+.|..|+..+++.+..+....+ -+..+.|+|..- .++.++.++.|.
T Consensus 248 ~~~~-H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 248 ILEG-HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred hhcc-cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheecccee
Confidence 8888 999999987 44 558999999999999999999999999987666 499999999665 888888888764
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=94.64 Aligned_cols=143 Identities=11% Similarity=0.077 Sum_probs=108.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcC--------C--------CeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEE
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLR--------K--------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 64 (150)
+.|+|+|+.+++|+.+|.+.+|... + ....+.+.+|...+..++|+|++.++++++.|..+++|
T Consensus 71 vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~ 150 (434)
T KOG1009|consen 71 VRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLW 150 (434)
T ss_pred EEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEE
Confidence 4799999999999999999999876 2 11335567888999999999999999999999999999
Q ss_pred EcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeecc--------C-----------CC--
Q 031924 65 SWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIA--------E-----------HS-- 122 (150)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--------~-----------~~-- 122 (150)
|+. .++....+.. |..-+.-.+ .|-++++++-+.|...+.+.+...+.++... . |.
T Consensus 151 Dv~-~G~l~~~~~d-h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeT 228 (434)
T KOG1009|consen 151 DVH-AGQLLAILDD-HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDET 228 (434)
T ss_pred Eec-cceeEeeccc-cccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCc
Confidence 996 4577777777 887777766 7778888888888877777665433222211 1 11
Q ss_pred --CcceeEEEEcCCccEEEecccccc
Q 031924 123 --EYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 123 --~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
.+ ..+++|+|||.++++.+....
T Consensus 229 lksF-FrRlsfTPdG~llvtPag~~~ 253 (434)
T KOG1009|consen 229 LKSF-FRRLSFTPDGSLLVTPAGLFK 253 (434)
T ss_pred hhhh-hhhcccCCCCcEEEcccceee
Confidence 12 556899999999998765443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.7e-14 Score=92.47 Aligned_cols=147 Identities=12% Similarity=0.066 Sum_probs=105.0
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCCe----eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc---ccccc
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNT----VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG---YFKDC 72 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~---~~~~~ 72 (150)
|+++|- ..+|++++.|++.+|||++.-. +......|...|.+..|||.+..|++-+.|..|+|||.. .....
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence 467774 5588899999999999998632 234455788899999999998779999999999999973 22223
Q ss_pred ccccc-----cccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeE-EEEcCCccEEEecc-ccc
Q 031924 73 SDRFV-----GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES-LGIASVLCFINSGF-LSL 145 (150)
Q Consensus 73 ~~~~~-----~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~-~~~ 145 (150)
..++. +.|-.+..+.+.|+..++++|..-..|-++|...++.+..+.......|.+ ..|+|-+..+++|+ .+|
T Consensus 408 ~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~G 487 (498)
T KOG4328|consen 408 LGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSG 487 (498)
T ss_pred cceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccc
Confidence 33332 112334556678899999999999999999998888666653333223444 47999888555554 455
Q ss_pred cc
Q 031924 146 NV 147 (150)
Q Consensus 146 ~v 147 (150)
.|
T Consensus 488 ki 489 (498)
T KOG4328|consen 488 KI 489 (498)
T ss_pred eE
Confidence 44
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-13 Score=83.14 Aligned_cols=110 Identities=9% Similarity=0.132 Sum_probs=80.2
Q ss_pred CeeecCcceEEEE--cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC---CCeEEEEEcccccccccc
Q 031924 1 MTFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~ 75 (150)
++|+|+++.+++. ..++.+.+||++ ++.+..+. ....+.+.|+|+|+++++++. .|.+.+||.+. .+.+.+
T Consensus 65 ~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~ 140 (194)
T PF08662_consen 65 VAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKIST 140 (194)
T ss_pred EEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeec
Confidence 5799999987655 356799999997 44555543 467789999999999998864 47799999863 355554
Q ss_pred cccccccceeEee-ecCCCEEEEecC------CCcEEEEeccCCeeeeec
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSE------NGLISLVGILPNRIIQPI 118 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~ 118 (150)
+. |.. ++.+. +|+|++++++.. |+.+++|+.. |+.+...
T Consensus 141 ~~--~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 141 FE--HSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred cc--cCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 43 344 34444 999999998874 6788999984 5555443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=97.18 Aligned_cols=108 Identities=15% Similarity=0.214 Sum_probs=97.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc---CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
|+..|..+++++++.|..|+|||++.++..+.+++ |++..-.+...|.|.++++.+.|+++.+||+. .++++.++.
T Consensus 602 m~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~-sgEcvA~m~ 680 (1080)
T KOG1408|consen 602 MAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV-SGECVAQMT 680 (1080)
T ss_pred eeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEec-cchhhhhhc
Confidence 56788999999999999999999999998877764 56778889999999999999999999999985 679999999
Q ss_pred cccccceeEee-ecCCCEEEEecCCCcEEEEecc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSENGLISLVGIL 110 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~ 110 (150)
+ |...|+.+. .++-++|++.+.||.|.+|.+.
T Consensus 681 G-HsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 681 G-HSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred C-cchheeeeeecccchhheeecCCceEEEEECc
Confidence 9 999999988 7888999999999999999874
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.5e-13 Score=82.36 Aligned_cols=142 Identities=15% Similarity=0.213 Sum_probs=107.6
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCC---------C-eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRK---------N-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
+|+|.+++++++..+|.|.++.+.. + ..+...+.|++++..++|. ..+|++++ ||.|+-|.+++..+
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~e 93 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEE 93 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhh
Confidence 5789999999999999999998754 1 2344557899999999998 34566664 49999998764322
Q ss_pred ccc-------ccccccc-----cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEE
Q 031924 72 CSD-------RFVGLSP-----NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFI 138 (150)
Q Consensus 72 ~~~-------~~~~~~~-----~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (150)
... ..+. +. ..|+++. .|..+-++.++.|+.++-||+++++..+.+.+|.++ +.++.-......+
T Consensus 94 s~~~K~lwe~~~P~-~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY-vH~vv~R~~~~qi 171 (325)
T KOG0649|consen 94 SLATKRLWEVKIPM-QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY-VHSVVGRNANGQI 171 (325)
T ss_pred hccchhhhhhcCcc-ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce-eeeeeecccCcce
Confidence 110 1111 21 2366776 666666666679999999999999999999999998 9999986666778
Q ss_pred Eecccccccc
Q 031924 139 NSGFLSLNVN 148 (150)
Q Consensus 139 ~s~~~~~~v~ 148 (150)
.+|+-+|.++
T Consensus 172 lsG~EDGtvR 181 (325)
T KOG0649|consen 172 LSGAEDGTVR 181 (325)
T ss_pred eecCCCccEE
Confidence 8999998875
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-13 Score=97.04 Aligned_cols=142 Identities=18% Similarity=0.121 Sum_probs=118.1
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 82 (150)
++++.-++++|+.-+.|.+|+....+....+.+|++.+..+.++.||+++++.+.|.++++|++++........-+ |+.
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg-Hsa 219 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG-HSA 219 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc-ccc
Confidence 4566778999999999999998854444468899999999999999999999999999999999754333335557 888
Q ss_pred ceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 83 SVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 83 ~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
++-.++ .++ .+++++.|.+.++|+. .+..+..+..|....+..++..++...+.|++.++.+.
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk 283 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLK 283 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence 888777 444 9999999999999976 45666688888877899999999999999999988764
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=94.74 Aligned_cols=145 Identities=15% Similarity=0.121 Sum_probs=114.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe----eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT----VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~------- 69 (150)
++|+|.|++|++.+.|.+-|+|-.-..+ .+.+-+-|...++|+++-+....|++|.....+|+|+....
T Consensus 367 v~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~ 446 (764)
T KOG1063|consen 367 VDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMA 446 (764)
T ss_pred eeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHH
Confidence 5799999999999999999998754222 23344567778999999987777899999999999986321
Q ss_pred --------------------------------------------------------------------cccccccccccc
Q 031924 70 --------------------------------------------------------------------KDCSDRFVGLSP 81 (150)
Q Consensus 70 --------------------------------------------------------------------~~~~~~~~~~~~ 81 (150)
=..++++-| |.
T Consensus 447 i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG-HG 525 (764)
T KOG1063|consen 447 ICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYG-HG 525 (764)
T ss_pred HhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhcc-Cc
Confidence 011223446 77
Q ss_pred cceeEee-ecCCCEEEEecCCC-----cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 82 NSVDALL-KLDEDRVITGSENG-----LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
..|.+++ +|+++++++++... .|++|+..+-...+.+..|.- .|+.++|||||++|++.|.+-.+
T Consensus 526 yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL-TVT~l~FSpdg~~LLsvsRDRt~ 596 (764)
T KOG1063|consen 526 YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL-TVTRLAFSPDGRYLLSVSRDRTV 596 (764)
T ss_pred eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce-EEEEEEECCCCcEEEEeecCceE
Confidence 8899988 99999999998544 589999988877788888876 69999999999999999987654
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.1e-14 Score=94.09 Aligned_cols=138 Identities=12% Similarity=0.053 Sum_probs=114.8
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
.|-|.--+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-.|..+|+|.+|... ....+..+.. |.
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~-skePLvKiLc-H~ 293 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN-SKEPLVKILC-HR 293 (545)
T ss_pred cccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC-CcchHHHHHh-cC
Confidence 456666678888999999999999999988888788899999999999889999999999999975 4466666778 99
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
++|.++. .++|+++++.+.|..++|||++.-..+.++.. ..+...+++|..|.+.++-+.
T Consensus 294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~SqkglLA~~~G~ 354 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKGLLALSYGD 354 (545)
T ss_pred CCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCCccccccccccceeeecCC
Confidence 9999998 89999999999999999999987765555433 236788899988876665443
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.8e-13 Score=85.43 Aligned_cols=128 Identities=19% Similarity=0.319 Sum_probs=94.7
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeee--ccCC-CcEEEEEEEeCCCEEEeec----CCCeEEEEEccccccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRS--EFSE-EELTSVVLMKNGRKVVCGS----QSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~----~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
....+.+++.||+|++||++......++ ..+. .+..+++.+-.++.+++|+ .+-.+.+||++...+.+..+..
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e 162 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE 162 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh
Confidence 3557888999999999999986544332 3333 3677777766788888886 4678999999877664555544
Q ss_pred ccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCe----eeeeccCCCCcceeEEEEcCCc
Q 031924 79 LSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLGIASVL 135 (150)
Q Consensus 79 ~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~ 135 (150)
.|.+-|+++. .| +.++|++|+.||-|.++|+.... ++.++ .+.. +|.++.|..++
T Consensus 163 SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~s-SI~~igw~~~~ 223 (376)
T KOG1188|consen 163 SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGS-SIHLIGWLSKK 223 (376)
T ss_pred hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccc-eeeeeeeecCC
Confidence 4999999988 44 67899999999999999986422 33444 4444 59999999887
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=92.33 Aligned_cols=144 Identities=13% Similarity=0.134 Sum_probs=116.9
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeec----------------------------c----------CCCcEEEE
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE----------------------------F----------SEEELTSV 43 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------------------------~----------~~~~v~~~ 43 (150)
.|+.+|+.++.++..|+|..+|..+++....+. . ....+..+
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~rL 215 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVARL 215 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhhh
Confidence 467789999999999999999998875442211 0 11345567
Q ss_pred EEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCC
Q 031924 44 VLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHS 122 (150)
Q Consensus 44 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 122 (150)
.|-|..-.|++++..|.++.-|+. .++.+..+.. ....+..+. +|-+..+-.|..+|+|.+|.....+++..+.-|.
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS-~GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~ 293 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVS-TGKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHR 293 (545)
T ss_pred cccchhheeeecccCCceEEEeec-hhhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcC
Confidence 777877788888899999988884 5677777766 566777777 7878899999999999999999888888888998
Q ss_pred CcceeEEEEcCCccEEEecccccccc
Q 031924 123 EYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 123 ~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+ +|.++++.++|+|+||.+.+..++
T Consensus 294 g-~V~siAv~~~G~YMaTtG~Dr~~k 318 (545)
T KOG1272|consen 294 G-PVSSIAVDRGGRYMATTGLDRKVK 318 (545)
T ss_pred C-CcceEEECCCCcEEeeccccccee
Confidence 9 799999999999999999987765
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.5e-13 Score=90.94 Aligned_cols=137 Identities=13% Similarity=0.069 Sum_probs=85.3
Q ss_pred CeeecCcceEEEEcCC---CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEccccccccccc
Q 031924 1 MTFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~ 76 (150)
..|+||++.|+..+.+ ..|.+||+.+++... +....+....++|+|||+.|+.+ +.+|...+|.+...+....++
T Consensus 209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l 287 (429)
T PRK01742 209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQL 287 (429)
T ss_pred ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEee
Confidence 3699999999887643 479999998875422 12222334468999999988775 467877766543223334445
Q ss_pred ccccccceeEee-ecCCCEEEEec-CCCcEEEEeccCC-eeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 77 VGLSPNSVDALL-KLDEDRVITGS-ENGLISLVGILPN-RIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~~~~~l~~~~-~dg~i~~~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
.. +...+.... +|+|+.++..+ .++..++|++... .....+ .+.. ....|+|||++++..+.
T Consensus 288 t~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~---~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 288 TS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG---YSAQISADGKTLVMING 352 (429)
T ss_pred cc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC---CCccCCCCCCEEEEEcC
Confidence 54 444444444 88998776554 5678888876432 122222 2222 24578888888776543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.7e-12 Score=85.01 Aligned_cols=141 Identities=22% Similarity=0.351 Sum_probs=111.6
Q ss_pred ecCcc-eEEEEcC-CCeEEEEEcCC-CeeeeeeccCCCcEEEEEEEeCCCEEEeecC-CCeEEEEEcccccccccccccc
Q 031924 4 AADAM-KLLGTSG-DGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 4 ~~~~~-~l~~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
++++. .++..+. |+.+.+|+... ......+..|...+..++|+|++..++.++. |+.+++|+... ......+.+
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 196 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAG- 196 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-CceEEeecc-
Confidence 45665 4444444 99999999998 6677888899999999999999998888885 99999999863 466677777
Q ss_pred cccceeEee-ecCCC-EEEEecCCCcEEEEeccCCeeee-eccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KLDED-RVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~-~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|...+.++. .+++. .+++++.|+.+++||...+..+. .+..|... . ...|+|++.++++++.++.+.
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~d~~~~ 266 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS-V-VSSFSPDGSLLASGSSDGTIR 266 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc-e-eEeECCCCCEEEEecCCCcEE
Confidence 888898888 67776 55555899999999988777777 57677663 3 338999998888888877664
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.3e-13 Score=84.98 Aligned_cols=147 Identities=12% Similarity=0.048 Sum_probs=109.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC-C--eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc--cccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK-N--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~ 75 (150)
|+|+|..+.|++++.|..-++|.... + ++.-.+..+....+++.|+|.++.|++|+....|.+|-++.... ..+.
T Consensus 61 vdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKh 140 (361)
T KOG1523|consen 61 VDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKH 140 (361)
T ss_pred EeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhh
Confidence 57999999999999999999999843 3 24445567788999999999999999999999999998753221 1222
Q ss_pred cccccccceeEee-ecCCCEEEEecCCCcEEEEecc-----C-------------CeeeeeccCCCCcceeEEEEcCCcc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGIL-----P-------------NRIIQPIAEHSEYPIESLGIASVLC 136 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~-----~-------------~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (150)
++-.+...|+++. .+++-++++|+.|+..|++... . ++.+..+....+ -+..+.|+|+|.
T Consensus 141 ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~gg-wvh~v~fs~sG~ 219 (361)
T KOG1523|consen 141 IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGG-WVHGVLFSPSGN 219 (361)
T ss_pred hCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCC-ceeeeEeCCCCC
Confidence 2221677888988 7888899999999999998642 1 112222222334 399999999999
Q ss_pred EEEecccccccc
Q 031924 137 FINSGFLSLNVN 148 (150)
Q Consensus 137 ~l~s~~~~~~v~ 148 (150)
.|+-.+.+..|+
T Consensus 220 ~lawv~Hds~v~ 231 (361)
T KOG1523|consen 220 RLAWVGHDSTVS 231 (361)
T ss_pred EeeEecCCCceE
Confidence 998777665543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=90.29 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=92.8
Q ss_pred CeeecCcceEEEEc-CCCeEEEE--EcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEccccccccccc
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVC--NLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~ 76 (150)
.+|+||++.|+.++ .+|.+.|| |+.+++ ...+..+...+....|+|||+.++.. ..++..++|++...+.....+
T Consensus 253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 253 PAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred eeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 36999999888764 67766555 665554 34455566678889999999987654 467888999875433333333
Q ss_pred ccccccceeEe-eecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
. +.. ... .+|+|+.++..+.++ +..||+.+++........ ....+.|+|||++++.++..+..
T Consensus 332 -~-~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~ 395 (429)
T PRK01742 332 -G-GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDESPSISPNGIMIIYSSTQGLG 395 (429)
T ss_pred -c-CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCCceECCCCCEEEEEEcCCCc
Confidence 3 332 223 388999998887765 556999877654332222 24567899999999988766544
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.6e-12 Score=83.50 Aligned_cols=140 Identities=9% Similarity=-0.004 Sum_probs=90.9
Q ss_pred CeeecCcceEEEEc-CCCeEEEEEcC-CCee--eeeeccCCCcEEEEEEEeCCCEEEeecC-CCeEEEEEccccccc---
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVCNLR-KNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC--- 72 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~--- 72 (150)
|+++|++++|++++ .++.|.+|++. +++. ..... ..+....++++|+++++++++. ++.+.+|++...+..
T Consensus 40 l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~ 118 (330)
T PRK11028 40 MVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP 118 (330)
T ss_pred EEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc
Confidence 46899999887764 58899999987 3432 22222 2335678999999999887764 789999998643322
Q ss_pred ccccccccccceeEe-eecCCCEEEE-ecCCCcEEEEeccCCeeeee-----ccCCCCcceeEEEEcCCccEEEeccc
Q 031924 73 SDRFVGLSPNSVDAL-LKLDEDRVIT-GSENGLISLVGILPNRIIQP-----IAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
...+.+ ... ...+ .+|+++++++ ...++.|.+||+.+...+.. .....+.....++|+|+|+++++...
T Consensus 119 ~~~~~~-~~~-~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 119 IQIIEG-LEG-CHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred eeeccC-CCc-ccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec
Confidence 222222 222 3334 3888887755 44579999999976332211 11111224678999999998876654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=88.41 Aligned_cols=144 Identities=15% Similarity=0.109 Sum_probs=107.0
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
.|+|.+ .++.|...|...+.|.++...+..... .+++++++|+|+|.+|+.|+.|+.|++|.+...++...+..--+.
T Consensus 414 ~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 414 DFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred eccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence 688998 999999999999999999655544444 889999999999999999999999999999777665554432145
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec------------------cCCCCcceeEEEEcCCccEEEecc
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI------------------AEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------------------~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
.+|+.+. +++++++.+-+.|-.|..|.....+..... ..+.. .|..++-+.+.+.+|+|.
T Consensus 492 s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t-~i~a~~rs~~~~~lA~gd 570 (626)
T KOG2106|consen 492 SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGT-DINAVARSHCEKLLASGD 570 (626)
T ss_pred ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCc-hHHHhhhhhhhhhhhccc
Confidence 7788888 889999999999999999954322211111 11212 355566666777777776
Q ss_pred cccccc
Q 031924 143 LSLNVN 148 (150)
Q Consensus 143 ~~~~v~ 148 (150)
.-+.|.
T Consensus 571 d~g~v~ 576 (626)
T KOG2106|consen 571 DFGKVH 576 (626)
T ss_pred cCceEE
Confidence 665553
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=85.53 Aligned_cols=130 Identities=11% Similarity=0.140 Sum_probs=103.9
Q ss_pred eeecC--cceEEEEcCCCeEEEEEcCCCe-eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 2 TFAAD--AMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 2 ~~~~~--~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
.|-+. ...|+++..-+++++||.+.++ ++..+...+.+++++...|+++++++|...|.+..||.+...-....+.+
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 45554 6789999999999999998764 56777777889999999999999999999999999999754333444777
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCC
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASV 134 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 134 (150)
..+.+..+. .+.++++++++-|..+|++|+++.+.+...-- .. .++++.+.++
T Consensus 289 -~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks-~lt~il~~~~ 342 (412)
T KOG3881|consen 289 -ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KS-RLTFILLRDD 342 (412)
T ss_pred -ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hc-cccEEEecCC
Confidence 788888887 78889999999999999999998776654421 22 3666666554
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-13 Score=92.09 Aligned_cols=144 Identities=13% Similarity=0.152 Sum_probs=118.6
Q ss_pred CeeecCcceEEEEcC---CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
|.|+-.|.+|++... ...|.|+++...+.+.-+....+.+.++.|+|...+|++++.. .|++||+. .+..++++.
T Consensus 527 vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~-kqelvKkL~ 604 (733)
T KOG0650|consen 527 VTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLS-KQELVKKLL 604 (733)
T ss_pred eeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehh-HHHHHHHHh
Confidence 578899999998754 4678899998876665565667889999999999999888664 79999995 345566665
Q ss_pred cccccceeEee-ecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
. ...++..+. ++.|..|+.++.|+.+..+|+.- .++.+.+..|+. .+++++|++.-.++|+|+.++.+-
T Consensus 605 t-g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~-avr~Va~H~ryPLfas~sdDgtv~ 675 (733)
T KOG0650|consen 605 T-GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK-AVRSVAFHKRYPLFASGSDDGTVI 675 (733)
T ss_pred c-CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh-hhhhhhhccccceeeeecCCCcEE
Confidence 5 567788888 89999999999999999999863 568888888888 599999999999999999987764
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.7e-12 Score=83.04 Aligned_cols=148 Identities=14% Similarity=0.032 Sum_probs=108.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC------Ceeeeeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK------NTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~ 73 (150)
+.|+.++++|++|+.|.++++|.++. .+++.... .|...|.|++|...++++++|..+++|.+.|+++. +.+
T Consensus 62 lqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~-qsi 140 (609)
T KOG4227|consen 62 LQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK-QSI 140 (609)
T ss_pred eeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccc-eee
Confidence 46889999999999999999999864 23443333 45578999999999999999999999999999643 444
Q ss_pred ccccc-ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe-eeee-ccCCCCcceeEEEEcCCc-cEEEecccccccc
Q 031924 74 DRFVG-LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR-IIQP-IAEHSEYPIESLGIASVL-CFINSGFLSLNVN 148 (150)
Q Consensus 74 ~~~~~-~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~-~~~~~~~~i~~~~~~~~~-~~l~s~~~~~~v~ 148 (150)
..+.. -....|..+. +|..+.+++.+.++.|.+||.+..+ .... ..+........+.|+|.. .+|++.+..+-++
T Consensus 141 ~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~ 220 (609)
T KOG4227|consen 141 YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPN 220 (609)
T ss_pred eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCC
Confidence 44431 0233788887 8888999999999999999997654 2211 122222247788999954 6777777766555
Q ss_pred C
Q 031924 149 P 149 (150)
Q Consensus 149 ~ 149 (150)
.
T Consensus 221 ~ 221 (609)
T KOG4227|consen 221 V 221 (609)
T ss_pred c
Confidence 3
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-12 Score=92.49 Aligned_cols=141 Identities=18% Similarity=0.242 Sum_probs=99.2
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc-CCCcEEEEEEEe-CCCEEEeecCCCeEEEEEcccccc--cccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKD--CSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~ 77 (150)
.|.....+|++++.-..|+|||..+......+.. .+..++++.-+. .|+.+++|..||.+++||.+.... .+....
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 5666666677776788999999998877666543 344566665543 379999999999999999864322 344445
Q ss_pred cccccc--eeEee-ecCCC-EEEEecCCCcEEEEeccCCe--eeeeccCCCCc--ceeEEEEcCCccEEEeccc
Q 031924 78 GLSPNS--VDALL-KLDED-RVITGSENGLISLVGILPNR--IIQPIAEHSEY--PIESLGIASVLCFINSGFL 143 (150)
Q Consensus 78 ~~~~~~--v~~~~-~~~~~-~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~ 143 (150)
. |... |..+. .+.|- .+++|+.||.|++||++... ....+..|-++ ..+++..+++...+|+|+.
T Consensus 1252 ~-h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1252 E-HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred c-cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence 5 6555 55544 44343 69999999999999998632 22222233322 2899999999999999985
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.5e-12 Score=86.20 Aligned_cols=139 Identities=14% Similarity=0.059 Sum_probs=88.9
Q ss_pred eeecCcceEEEEcC---CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEcccccccccccc
Q 031924 2 TFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
+|+||++.|+..+. ...|.+||+.+++... +....+......|+|||+.|+ +.+.++...+|.++..+....++.
T Consensus 202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt 280 (427)
T PRK02889 202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT 280 (427)
T ss_pred eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC
Confidence 69999999887653 3469999999886543 333345567899999999886 567788877776543333344454
Q ss_pred cccccceeEe-eecCCCEEEEecC-CCcEEEEe--ccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 78 GLSPNSVDAL-LKLDEDRVITGSE-NGLISLVG--ILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~-dg~i~~~d--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
. +....... .+++|+.++..+. ++...+|. +.+++. ..+..+... .....|+|||++|+..+..
T Consensus 281 ~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~-~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 281 Q-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSY-NTSPRISPDGKLLAYISRV 348 (427)
T ss_pred C-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCC-cCceEECCCCCEEEEEEcc
Confidence 3 33333333 4889998876554 45556664 444433 222222222 4467899999999866543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-11 Score=90.54 Aligned_cols=138 Identities=16% Similarity=0.161 Sum_probs=99.8
Q ss_pred cCcceEEEEcCCCeEEEEEcCCC-------eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-------
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK------- 70 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~------- 70 (150)
+++.++++|+.||+|++|+...- +...+.......+.++...+.+..+++++.||.|++.+++...
T Consensus 1059 ~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~ 1138 (1431)
T KOG1240|consen 1059 EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVAT 1138 (1431)
T ss_pred CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceee
Confidence 45589999999999999998752 1222333356789999999999999999999999999875410
Q ss_pred -----------------------cc----------------------c--cccccccccceeEee-ecCCCEEEEecCCC
Q 031924 71 -----------------------DC----------------------S--DRFVGLSPNSVDALL-KLDEDRVITGSENG 102 (150)
Q Consensus 71 -----------------------~~----------------------~--~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg 102 (150)
+. . .+... ..+.|++++ ++.+++++.|+..|
T Consensus 1139 ~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~-~hG~vTSi~idp~~~WlviGts~G 1217 (1431)
T KOG1240|consen 1139 QVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL-RHGLVTSIVIDPWCNWLVIGTSRG 1217 (1431)
T ss_pred eeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc-cccceeEEEecCCceEEEEecCCc
Confidence 00 0 00111 234577777 88888999999999
Q ss_pred cEEEEeccCCeeeeeccCCCCcceeEEEEcCC---ccEEEeccc
Q 031924 103 LISLVGILPNRIIQPIAEHSEYPIESLGIASV---LCFINSGFL 143 (150)
Q Consensus 103 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~s~~~ 143 (150)
.+.+||++-+.++..+......+++.+..+|- ....++++.
T Consensus 1218 ~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1218 QLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred eEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 99999999888877764322346888888763 346666555
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=85.80 Aligned_cols=105 Identities=15% Similarity=0.160 Sum_probs=82.1
Q ss_pred EEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeecc
Q 031924 41 TSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 41 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 119 (150)
.+++|+.+|..+++|+.||++|+|++... ..+..... |...|.++. ++++++|++-+.| ..++|+..++..++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-~t~l~e~~-~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-LTILEEIA-HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc-hhhhhhHh-hcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 68999999999999999999999997544 33344445 788899998 9999999999999 99999987662111110
Q ss_pred -----------------------------CC------------C------------CcceeEEEEcCCccEEEecccccc
Q 031924 120 -----------------------------EH------------S------------EYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 120 -----------------------------~~------------~------------~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
.+ . ...|++++++++|+++|.|+.++.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 00 0 114899999999999999999987
Q ss_pred cc
Q 031924 147 VN 148 (150)
Q Consensus 147 v~ 148 (150)
|-
T Consensus 305 Va 306 (398)
T KOG0771|consen 305 VA 306 (398)
T ss_pred EE
Confidence 73
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-11 Score=80.29 Aligned_cols=139 Identities=8% Similarity=0.049 Sum_probs=92.6
Q ss_pred CeeecCcceEEEEc-CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
|.|++|+..+++++ .|..|.|||..++..+.......+.++-+.|+|||.+|++++.|+..++|+.... ....+...
T Consensus 201 mqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~-wt~erw~l- 278 (445)
T KOG2139|consen 201 MQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS-WTKERWIL- 278 (445)
T ss_pred EEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccc-ceecceec-
Confidence 57999999999988 6889999999998766444445677889999999999999999999999965322 22222222
Q ss_pred cccceeEee-ecCCCEEEEec-CCCcEEEEeccCC----------eeeee---c-----cCC----CCcceeEEEEcCCc
Q 031924 80 SPNSVDALL-KLDEDRVITGS-ENGLISLVGILPN----------RIIQP---I-----AEH----SEYPIESLGIASVL 135 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~-~dg~i~~~d~~~~----------~~~~~---~-----~~~----~~~~i~~~~~~~~~ 135 (150)
..+.|...+ +|+|+.|+... ....++-...... +.... + ... .+ ++.+++|+|.|
T Consensus 279 gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cg-eaq~lawDpsG 357 (445)
T KOG2139|consen 279 GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCG-EAQCLAWDPSG 357 (445)
T ss_pred cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccC-ccceeeECCCC
Confidence 244666544 89888665443 3333332221110 00000 0 011 13 58899999999
Q ss_pred cEEEecc
Q 031924 136 CFINSGF 142 (150)
Q Consensus 136 ~~l~s~~ 142 (150)
.+||+-.
T Consensus 358 eyLav~f 364 (445)
T KOG2139|consen 358 EYLAVIF 364 (445)
T ss_pred CEEEEEE
Confidence 9999754
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.4e-11 Score=80.10 Aligned_cols=139 Identities=12% Similarity=0.069 Sum_probs=90.7
Q ss_pred CeeecCcceEEEEc-CCCeEEEEEcCC-Ce---eeeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEccccccccc
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVCNLRK-NT---VQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSD 74 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~d~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~ 74 (150)
|+|+|+++++++++ .++.|.+|+++. +. ....+. .......++++|+++++++++ .++.|.+||+...+....
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 46899999888876 588999999974 22 222222 223467788999999886555 569999999964332211
Q ss_pred ------ccccccccceeEee-ecCCCEEEEecC-CCcEEEEeccC--Ce--eeeeccCCC------CcceeEEEEcCCcc
Q 031924 75 ------RFVGLSPNSVDALL-KLDEDRVITGSE-NGLISLVGILP--NR--IIQPIAEHS------EYPIESLGIASVLC 136 (150)
Q Consensus 75 ------~~~~~~~~~v~~~~-~~~~~~l~~~~~-dg~i~~~d~~~--~~--~~~~~~~~~------~~~i~~~~~~~~~~ 136 (150)
.... . .....+. +++++++++... ++.|.+|++.. ++ .++.+...+ .. ...+.++|+++
T Consensus 164 ~~~~~~~~~~-g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~i~~~pdg~ 240 (330)
T PRK11028 164 QEPAEVTTVE-G-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRW-AADIHITPDGR 240 (330)
T ss_pred cCCCceecCC-C-CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcc-ceeEEECCCCC
Confidence 1111 1 2233344 889998887776 89999999973 22 333332211 11 33688999999
Q ss_pred EEEeccc
Q 031924 137 FINSGFL 143 (150)
Q Consensus 137 ~l~s~~~ 143 (150)
++.++..
T Consensus 241 ~lyv~~~ 247 (330)
T PRK11028 241 HLYACDR 247 (330)
T ss_pred EEEEecC
Confidence 8888643
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-11 Score=85.16 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=91.1
Q ss_pred eeecCcceEEEEc---CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCe--EEEEEcccccccccc
Q 031924 2 TFAADAMKLLGTS---GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGT--VLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~i~~~~~~~~~~~~ 75 (150)
.|+||++.|+..+ .+..|.+||+.+++.. .+....+.+...+|+|||+.|+ +.+.++. |.+||+. +....+
T Consensus 208 ~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~--~~~~~~ 284 (435)
T PRK05137 208 RFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR--SGTTTR 284 (435)
T ss_pred EECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC--CCceEE
Confidence 6899999888765 3568999999888653 3444556677899999998875 5555655 6666764 233344
Q ss_pred cccccccceeEee-ecCCCEEEEecC-CC--cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. +........ +|+|+.++..+. +| .|+++|+..++. +.+..+.. .+....|+|||+.|+..+.
T Consensus 285 Lt~-~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~-~~~~~~~SpdG~~ia~~~~ 353 (435)
T PRK05137 285 LTD-SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGG-RYSTPVWSPRGDLIAFTKQ 353 (435)
T ss_pred ccC-CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCC-cccCeEECCCCCEEEEEEc
Confidence 544 443333333 889998877653 33 688888866544 33333334 3667899999999886543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-12 Score=88.66 Aligned_cols=139 Identities=14% Similarity=0.043 Sum_probs=103.5
Q ss_pred cceEEEEcCCCeEEEEEcCCCee------eeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc--ccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTV------QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--FVG 78 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~~~ 78 (150)
...|+.+.+||.|.++|.+.... +.....|...|.++.|.|....|++++.|.++++||+... ++... +.+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s-~l~G~~~~~G 142 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS-RLVGGRLNLG 142 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc-eeecceeecc
Confidence 45788899999999999876432 2455678999999999997788999999999999999643 55544 778
Q ss_pred ccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCe--------------------ee-------eeccCCCCcceeE-
Q 031924 79 LSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNR--------------------II-------QPIAEHSEYPIES- 128 (150)
Q Consensus 79 ~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~--------------------~~-------~~~~~~~~~~i~~- 128 (150)
|...+.+++ .+ +...|++|+.||.|.+||++-.. .. ....++.. .|.+
T Consensus 143 -H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~-ti~ss 220 (720)
T KOG0321|consen 143 -HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASN-TIFSS 220 (720)
T ss_pred -cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccC-ceeee
Confidence 999999887 44 66789999999999999986321 00 00112222 2555
Q ss_pred --EEEcCCccEEEeccc-ccccc
Q 031924 129 --LGIASVLCFINSGFL-SLNVN 148 (150)
Q Consensus 129 --~~~~~~~~~l~s~~~-~~~v~ 148 (150)
+.+..|...||+++. ++.|.
T Consensus 221 vTvv~fkDe~tlaSaga~D~~iK 243 (720)
T KOG0321|consen 221 VTVVLFKDESTLASAGAADSTIK 243 (720)
T ss_pred eEEEEEeccceeeeccCCCcceE
Confidence 666788888888887 65554
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.6e-11 Score=81.42 Aligned_cols=137 Identities=16% Similarity=0.164 Sum_probs=90.6
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEcccccccccccccc-
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFVGL- 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~- 79 (150)
.|+||++++++++.||.|.++|+.+++.+.++..- ....++++++||+++++++ .++.+.++|.++. +.+++++..
T Consensus 43 ~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~ 120 (369)
T PF02239_consen 43 KFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGG 120 (369)
T ss_dssp E-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--E
T ss_pred EecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccc-cceeeccccc
Confidence 57899999999999999999999999988887654 3568899999999998776 5799999997643 555555420
Q ss_pred -----cccceeEee-ecCCCEEE-EecCCCcEEEEeccCCeee--eeccCCCCcceeEEEEcCCccEEEecc
Q 031924 80 -----SPNSVDALL-KLDEDRVI-TGSENGLISLVGILPNRII--QPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 80 -----~~~~v~~~~-~~~~~~l~-~~~~dg~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
.+..+..+. ++....++ +--..+.|.+.|....+.+ ..+. ... ......|+|+++++..+.
T Consensus 121 ~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~-~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 121 MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGR-FPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---T-TEEEEEE-TTSSEEEEEE
T ss_pred ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-ccc-cccccccCcccceeeecc
Confidence 123455665 66666444 4455588888887654433 2332 223 377899999999877654
|
... |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-11 Score=77.74 Aligned_cols=139 Identities=12% Similarity=0.123 Sum_probs=97.8
Q ss_pred ceEEEEcCCCeEEEEEcCC-CeeeeeeccCC--CcEEEEEEEeCCCEEEeec-CCCeEEEEEcccccc-ccccccccccc
Q 031924 8 MKLLGTSGDGTLSVCNLRK-NTVQTRSEFSE--EELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKD-CSDRFVGLSPN 82 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~-~~~~~~~~~~~ 82 (150)
..|++. ..+.|.+|.... -+.++.++... ..+.+++-..+...|+.-+ .-|.|++-|+..... ....+.. |..
T Consensus 105 ~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A-H~s 182 (346)
T KOG2111|consen 105 DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA-HDS 182 (346)
T ss_pred CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc-ccC
Confidence 455555 556888888774 33444443322 2233333333445555544 559999999864322 2345566 999
Q ss_pred ceeEee-ecCCCEEEEecCCCc-EEEEeccCCeeeeeccCCCC-cceeEEEEcCCccEEEecccccccc
Q 031924 83 SVDALL-KLDEDRVITGSENGL-ISLVGILPNRIIQPIAEHSE-YPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 83 ~v~~~~-~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.|.|+. +.+|.++++++..|+ ||+||..++..++.+....+ ..|.+++|||++.+||..|.-+.+.
T Consensus 183 ~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlH 251 (346)
T KOG2111|consen 183 DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLH 251 (346)
T ss_pred ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEE
Confidence 999998 889999999999995 89999999999888854332 3599999999999999999877654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-12 Score=92.51 Aligned_cols=141 Identities=16% Similarity=0.192 Sum_probs=102.9
Q ss_pred CcceEEEEcCCCeEEEEEcCCCe---eeeeeccCCCc--EEEEEEEeCCCE-EEeecCCCeEEEEEccccc-cccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEE--LTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFK-DCSDRFVG 78 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~--v~~~~~~~~~~~-l~~~~~d~~i~i~~~~~~~-~~~~~~~~ 78 (150)
.|+.+++|..||.|++||.+... .+.....|... |..+.+.+.|-. |++|+.||.|++||++... .....+..
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 47899999999999999987643 34555666665 899999887654 9999999999999998521 11111222
Q ss_pred cc---ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCC------CcceeEEEEcCCccEEEecccccccc
Q 031924 79 LS---PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHS------EYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 79 ~~---~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
| ....+++. +.....+++|+. +.|++|++. ++.+..+..++ .-++.+++|+|---.+|.|+.+..|+
T Consensus 1300 -~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1300 -HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred -ccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 2 12478887 777889999888 999999985 44333333222 12588999999999999998888776
Q ss_pred C
Q 031924 149 P 149 (150)
Q Consensus 149 ~ 149 (150)
.
T Consensus 1377 i 1377 (1387)
T KOG1517|consen 1377 I 1377 (1387)
T ss_pred E
Confidence 4
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-13 Score=95.65 Aligned_cols=139 Identities=11% Similarity=0.107 Sum_probs=110.0
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
.|+..+.++++++.|..++||.+++..++....+|++.++.++.+.+..++++++.|..|++|.+. .+..+..+.+ |+
T Consensus 197 ~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~-~~~pvsvLrg-ht 274 (1113)
T KOG0644|consen 197 IFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP-DGAPVSVLRG-HT 274 (1113)
T ss_pred eeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC-CCchHHHHhc-cc
Confidence 467789999999999999999999999999999999999999999999999999999999999986 4577888889 99
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccCCeee---eeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILPNRII---QPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
+.|+++. +|.. +.+.||++++||.+-...+ ......++..+-++.|...+.-++||+.++.
T Consensus 275 gavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 275 GAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred cceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence 9999998 5543 6788999999998721111 1111111223666677777777777776553
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-11 Score=80.33 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=87.5
Q ss_pred eeec--CcceEEEEc--CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCe-EEEEEccccccccccc
Q 031924 2 TFAA--DAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGYFKDCSDRF 76 (150)
Q Consensus 2 ~~~~--~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~~~~~~~~~~~~~ 76 (150)
+++| ++.+++.-+ ..|.|.+||..+-+....+..|++.+.+++|+++|.+|++++..|+ ||+|.+. .++.+..|
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~-~G~kl~eF 212 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP-EGQKLYEF 212 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC-CccEeeee
Confidence 4444 345777532 5789999999998888899999999999999999999999999986 6799985 45666666
Q ss_pred c-cccccceeEee-ecCCCEEEEecCCCcEEEEeccC
Q 031924 77 V-GLSPNSVDALL-KLDEDRVITGSENGLISLVGILP 111 (150)
Q Consensus 77 ~-~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~ 111 (150)
. |.....|.++. ++++++|++.+..++|+++.+..
T Consensus 213 RRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 213 RRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 5 32345566777 88999999999999999998753
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-11 Score=87.24 Aligned_cols=142 Identities=13% Similarity=0.092 Sum_probs=104.5
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeee----eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc---cccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY---FKDCSD 74 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~---~~~~~~ 74 (150)
.+++.+++.+.. .+..+.+|..+++... ..-..|.-.+++.+++|++++++++..||.|.+|.--. ......
T Consensus 167 ~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 167 VDNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCT 245 (792)
T ss_pred EEcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccce
Confidence 455666666666 3447888888875421 11123444579999999999999999999999995311 113344
Q ss_pred ccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
.+.- |...|.++. +++|.+|++|+..|.+-+|.+.+++ .+-++.-.. +|..+.++||+.+.+....+..+
T Consensus 246 ~lHW-H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs-~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 246 LLHW-HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGS-PILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred EEEe-cccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCC-eeEEEEEcCCCCeEEEEecCceE
Confidence 5566 888999998 8999999999999999999998877 344444445 79999999999988776666544
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-11 Score=84.22 Aligned_cols=140 Identities=15% Similarity=0.090 Sum_probs=89.2
Q ss_pred eeecCcceEEEE-cCCC--eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC-CCeEEEEEcccccccccccc
Q 031924 2 TFAADAMKLLGT-SGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~ 77 (150)
.|+||++.|+.. +.++ .|.+||+++++... +......+....|+|||+.|+..+. ++...+|.+...+....++.
T Consensus 249 ~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 249 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred EECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee
Confidence 699999988865 3344 58899998876543 3444456788999999998876654 45555664432222233333
Q ss_pred cccccceeEee-ecCCCEEEEecCC---CcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
. ......... +|+|+.++..+.+ ..+++||+.+++.. .+... . ......|+|||+.|+..+.++.
T Consensus 328 ~-~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~-~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 328 W-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-F-LDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred c-CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-C-CCCCceECCCCCEEEEEEcCCC
Confidence 2 222233333 8899988776543 35888898777643 33221 1 2456789999999988776543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-11 Score=77.04 Aligned_cols=131 Identities=11% Similarity=0.062 Sum_probs=99.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee--eeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccccccc-c
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDR-F 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~-~ 76 (150)
+.|++.+..++++..+|.+.+-+....... +..+.|+-+.....|+.. .+.+.+|+.|+.+..||++..++.+.+ .
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~ 206 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS 206 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence 357888888999989999986554444333 477889888899999864 467889999999999999855544443 3
Q ss_pred ccccccceeEee--ecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCC
Q 031924 77 VGLSPNSVDALL--KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASV 134 (150)
Q Consensus 77 ~~~~~~~v~~~~--~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~ 134 (150)
+- |...|.++. .|.+..+++|+.|-.|++||.+. ++++..-.. .+ +|.++.++|.
T Consensus 207 kv-H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~G-GVWRi~~~p~ 264 (339)
T KOG0280|consen 207 KV-HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GG-GVWRIKHHPE 264 (339)
T ss_pred ee-eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-cc-ceEEEEecch
Confidence 44 788888887 45778999999999999999985 555554422 24 5888988884
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-11 Score=77.68 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=77.0
Q ss_pred eeecCcc----eEEEEcCCCeEEEEEcCCCe--ee-------eeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEcc
Q 031924 2 TFAADAM----KLLGTSGDGTLSVCNLRKNT--VQ-------TRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 2 ~~~~~~~----~l~~~~~d~~i~i~d~~~~~--~~-------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~ 67 (150)
-|.|+.+ -+++.+.| .+|+|.+...+ .. .+-..+..+++++.|+. +-+++.+.+-|.+..+||++
T Consensus 103 ~wiPd~~g~~pdlLATs~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie 181 (364)
T KOG0290|consen 103 MWIPDSKGVYPDLLATSSD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIE 181 (364)
T ss_pred EecCCccccCcchhhcccC-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEe
Confidence 4677653 33344355 89999987422 11 11123456899999986 57788999999999999997
Q ss_pred cc--cccccccccccccceeEeeecC--CCEEEEecCCCcEEEEeccC
Q 031924 68 YF--KDCSDRFVGLSPNSVDALLKLD--EDRVITGSENGLISLVGILP 111 (150)
Q Consensus 68 ~~--~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~dg~i~~~d~~~ 111 (150)
.. +....++.. |...|..+.... -+.+++.+.||.+|+||++.
T Consensus 182 ~~~~~~vkTQLIA-HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 182 TGVSGTVKTQLIA-HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred eccccceeeEEEe-cCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence 42 223455566 999999888443 46899999999999999874
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.2e-12 Score=85.97 Aligned_cols=133 Identities=18% Similarity=0.204 Sum_probs=103.9
Q ss_pred ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEe
Q 031924 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~ 87 (150)
..++.++.||.+.+.+ +.++....+..|.+.+.+-.|+|+|.-|++++.||.|++|.- .+....++.. ...+|.|.
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr--sGMLRStl~Q-~~~~v~c~ 151 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR--SGMLRSTVVQ-NEESIRCA 151 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec--cchHHHHHhh-cCceeEEE
Confidence 4688888999999987 446677778899999999999999999999999999999985 3555555555 67889998
Q ss_pred e-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 88 L-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 88 ~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
. .|+.+.++.+. .+.+.+=.+.....+-.+++|.+. |.++.|++...++++|+-+..
T Consensus 152 ~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGi-iL~~~W~~~s~lI~sgGED~k 209 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGL-VLSLSWSTQSNIIASGGEDFR 209 (737)
T ss_pred EECCCCCceEEec-CCeEEEeecccccceeEEeccCcE-EEEeecCccccceeecCCcee
Confidence 8 66655444432 345555555555555567799995 999999999999999998754
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=85.08 Aligned_cols=140 Identities=14% Similarity=0.164 Sum_probs=101.0
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeec------cCCC-----cEEEEEEEeCCCEEEeecCCCeEEEEEcccccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE------FSEE-----ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
.++...+|++|+.+|.|..||.+.......+. .+.+ .|+++.|+.+|-.+++|+.+|.+.+||++....
T Consensus 183 in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 183 INEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred ecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence 45666788889899999999998865443332 2222 499999999999999999999999999986544
Q ss_pred cccccccccccceeEeee-c-C-CCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 72 CSDRFVGLSPNSVDALLK-L-D-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~~-~-~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
....-.+ ..-+|..+.. . + ++.+++ .....+++||..+++....+..- . +++.+++-|++-.+.++--+..
T Consensus 263 l~~kdh~-~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt-~-~lND~C~~p~sGm~f~Ane~~~ 336 (703)
T KOG2321|consen 263 LLVKDHG-YELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPT-S-DLNDFCFVPGSGMFFTANESSK 336 (703)
T ss_pred eeecccC-CccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecccc-C-CcCceeeecCCceEEEecCCCc
Confidence 4333333 4555666652 2 2 344544 45678999999999988777433 3 4889999998888877765543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.6e-11 Score=83.83 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=101.5
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCCCee--e----eeeccCCCcEEEEEEEeCC--CEEEeecCCCeEEEEEcccc---
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTV--Q----TRSEFSEEELTSVVLMKNG--RKVVCGSQSGTVLLYSWGYF--- 69 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~--~----~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~~~~~~--- 69 (150)
.|+| +..+++.|+.+|.|.+||++.+.. . .....|.+++..+.|..+. .-|++++.||.|..|+++..
T Consensus 249 ~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P 328 (555)
T KOG1587|consen 249 KFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLP 328 (555)
T ss_pred EeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccc
Confidence 5677 466788888999999999988653 2 2334678899999998753 44999999999999987532
Q ss_pred -----------------------------------------c------------------ccccccccccccceeEee-e
Q 031924 70 -----------------------------------------K------------------DCSDRFVGLSPNSVDALL-K 89 (150)
Q Consensus 70 -----------------------------------------~------------------~~~~~~~~~~~~~v~~~~-~ 89 (150)
| +....+.. |...+.++. +
T Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~-h~g~v~~v~~n 407 (555)
T KOG1587|consen 329 VEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT-HIGPVYAVSRN 407 (555)
T ss_pred hhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccc-cCcceEeeecC
Confidence 0 00112223 556666665 4
Q ss_pred cCC-CEEEEecCCCcEEEEecc-CCeeeeeccCCCCcceeEEEEcCCc-cEEEecccccccc
Q 031924 90 LDE-DRVITGSENGLISLVGIL-PNRIIQPIAEHSEYPIESLGIASVL-CFINSGFLSLNVN 148 (150)
Q Consensus 90 ~~~-~~l~~~~~dg~i~~~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~~~~v~ 148 (150)
|=. ..+.+++ |..+++|... ...++..+..+.+ .+.+++|||.- ..++++..+|+++
T Consensus 408 PF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 408 PFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred CCccceeeeec-cceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCcee
Confidence 422 3444544 9999999877 5556666666666 49999999954 6788888888875
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=80.81 Aligned_cols=136 Identities=14% Similarity=0.113 Sum_probs=86.2
Q ss_pred eeecCcceEEEEc---CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCC--eEEEEEcccccccccc
Q 031924 2 TFAADAMKLLGTS---GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSG--TVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~i~~~~~~~~~~~~ 75 (150)
+|+|||+.|+..+ .+..+.+|++.+++... +....+......|+|||+.|+.. +.+| .|++||+.. ++. ..
T Consensus 205 ~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~~-~~ 281 (429)
T PRK03629 205 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQI-RQ 281 (429)
T ss_pred EEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CCE-EE
Confidence 6999999888653 35679999998875432 22233344568999999988754 4455 588888752 233 33
Q ss_pred cccccccceeEee-ecCCCEEEEecCC-Cc--EEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSEN-GL--ISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~d-g~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. +...+.... +|+|+.|+..+.+ +. |+.+|+.+++.. .+..+.. ......|+|||++++..+.
T Consensus 282 lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~-~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 282 VTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred ccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCC-CccCEEECCCCCEEEEEEc
Confidence 333 333344444 8899988776653 44 445566655443 3333333 3567899999999887554
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-12 Score=87.07 Aligned_cols=115 Identities=10% Similarity=0.109 Sum_probs=92.1
Q ss_pred eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc-ccccccceeEee-e--cCCCEEEEecCCCcEEE
Q 031924 31 TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF-VGLSPNSVDALL-K--LDEDRVITGSENGLISL 106 (150)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~~~v~~~~-~--~~~~~l~~~~~dg~i~~ 106 (150)
..+.+|.+-|+++.|+.+|.+|++|+.|-.+.|||.-.. +....+ ++ |...|.+.. - .+++.+++|..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~-KllhsI~Tg-HtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY-KLLHSISTG-HTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhc-ceeeeeecc-cccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 567899999999999999999999999999999998533 555555 46 998898876 2 36678999999999999
Q ss_pred EeccC----------CeeeeeccCCCCcceeEEEEcCCc-cEEEecccccccc
Q 031924 107 VGILP----------NRIIQPIAEHSEYPIESLGIASVL-CFINSGFLSLNVN 148 (150)
Q Consensus 107 ~d~~~----------~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~~~~v~ 148 (150)
+|+.. ......+.-|.. .|..++..|++ ..+.+++-+|.+.
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~-rVKria~~p~~PhtfwsasEDGtir 173 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTD-RVKRIATAPNGPHTFWSASEDGTIR 173 (758)
T ss_pred EecccccccccccCccchhhhhhhhhh-hhhheecCCCCCceEEEecCCccee
Confidence 99974 123334455666 58889999988 7888999888764
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.6e-11 Score=82.18 Aligned_cols=138 Identities=15% Similarity=0.109 Sum_probs=86.4
Q ss_pred eeecCcceEEE-EcCCCeEEEEE--cCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEcccccccccccc
Q 031924 2 TFAADAMKLLG-TSGDGTLSVCN--LRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~-~~~d~~i~i~d--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~ 77 (150)
+|+||++.|+. .+.++...+|. ...++ ...+..+........|+|||+.++..+ .++...+|.+...+.....+.
T Consensus 246 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 246 AWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence 69999988874 56777766665 44443 444444444556788999999887554 456777776542222222222
Q ss_pred cccccce-eEeeecCCCEEEEecCCC---cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 78 GLSPNSV-DALLKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 78 ~~~~~~v-~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
. ..... ....+|+|+.++..+.++ .|.+||+.+++... +... . ......|+|||+.|+..+..
T Consensus 325 ~-~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~-~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 325 F-TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-T-RDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred c-CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-C-CccCceECCCCCEEEEEEec
Confidence 2 11111 223488999988766554 69999998776543 3222 2 24678999999988876643
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.3e-11 Score=77.92 Aligned_cols=140 Identities=13% Similarity=0.093 Sum_probs=99.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc-CCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccc---c----
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFK---D---- 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~---~---- 71 (150)
++|++.-..++++..|..|++||-.. +....++. ....++|++|-|. +..|++|+..| |.+|...... +
T Consensus 104 ~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~ 181 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRM 181 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccccccc
Confidence 46777666778888999999999776 34434443 3457999999997 55677777665 7789764221 1
Q ss_pred ------cccccccccccceeEee-ecCCCEEEEecC-CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 72 ------CSDRFVGLSPNSVDALL-KLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 72 ------~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
.+.+.++ | ..|+++. .++|..+++++. |..|++||..++..+.......+ .++-+.|||||.+|..+.-
T Consensus 182 ~s~~~~qvl~~pg-h-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg-g~slLkwSPdgd~lfaAt~ 258 (445)
T KOG2139|consen 182 MSTHHLQVLQDPG-H-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG-GFSLLKWSPDGDVLFAATC 258 (445)
T ss_pred ccccchhheeCCC-C-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC-ceeeEEEcCCCCEEEEecc
Confidence 1112234 3 6788887 888988888875 67999999988776554433344 5888999999998887765
Q ss_pred cc
Q 031924 144 SL 145 (150)
Q Consensus 144 ~~ 145 (150)
+.
T Consensus 259 da 260 (445)
T KOG2139|consen 259 DA 260 (445)
T ss_pred cc
Confidence 54
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-11 Score=76.45 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=86.6
Q ss_pred ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-c--ccccccccccccceeEee--ec-CCCEEEEecCCCcEEEE
Q 031924 34 EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-K--DCSDRFVGLSPNSVDALL--KL-DEDRVITGSENGLISLV 107 (150)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~--~~~~~~~~~~~~~v~~~~--~~-~~~~l~~~~~dg~i~~~ 107 (150)
.+|.+-++++.|.+.|+.+++++.|++++|||.+.. + .+....+. |.+.|-.+. +| =|+.+++++.|+++.+|
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wra-h~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRA-HDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEe-cCCcEEEEEecCccccceEEEEecCCceeee
Confidence 367788999999999999999999999999996422 1 34455667 888888776 33 58999999999999999
Q ss_pred eccCC-------e--eeeeccCCCCcceeEEEEcC--CccEEEecccccccc
Q 031924 108 GILPN-------R--IIQPIAEHSEYPIESLGIAS--VLCFINSGFLSLNVN 148 (150)
Q Consensus 108 d~~~~-------~--~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~~~~v~ 148 (150)
..... + ...++..... .|+.+.|.| -|-.+|+++.+|.++
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~Dsrs-sV~DV~FaP~hlGLklA~~~aDG~lR 139 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRS-SVTDVKFAPKHLGLKLAAASADGILR 139 (361)
T ss_pred eecccccccccceeEEEEEeecCCc-ceeEEEecchhcceEEEEeccCcEEE
Confidence 76321 1 2233434444 599999998 477899999998775
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.5e-12 Score=86.11 Aligned_cols=116 Identities=14% Similarity=0.146 Sum_probs=95.4
Q ss_pred eeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc---c----cccccccccccccceeEee-ecCCCEEEEecCCCc
Q 031924 32 RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY---F----KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGL 103 (150)
Q Consensus 32 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~---~----~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~ 103 (150)
.+..|.+.++.+.|.+....|++++.||++.+|++.. . -+.+.+|.+ |..+|.|++ +.++..+++|+.||.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCceEEEeeccCce
Confidence 4556777889999999999999999999999999821 1 134567788 999999998 889999999999999
Q ss_pred EEEEeccCC----------eeeeeccCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 104 ISLVGILPN----------RIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 104 i~~~d~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
|+.|++... .....+.+|.+ .+..+++|+....|++++.++.|.+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~ 422 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRL 422 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceecccc-ceeeeeecccccceeeecCCceEEe
Confidence 999955321 23455678888 4999999999999999999998753
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=80.38 Aligned_cols=135 Identities=16% Similarity=0.128 Sum_probs=85.3
Q ss_pred eeecCcceEEE-EcCCC--eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCe--EEEEEcccccccccc
Q 031924 2 TFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGT--VLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~--i~i~~~~~~~~~~~~ 75 (150)
.|+||++.|+. .+.++ .|.+||+.+++.. .+..+.......+|+|||++++..+ .+|. +.++++.. ....+
T Consensus 254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~--g~~~~ 330 (433)
T PRK04922 254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG--GSAER 330 (433)
T ss_pred eECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCeEE
Confidence 69999987764 44444 6999999887643 3444444556789999999887665 4555 44555432 22233
Q ss_pred cccccccceeEee-ecCCCEEEEecCCC---cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. +........ +|+|+.++..+.++ .|.+||+.+++.. .+.. .. ......|+|||++++..+.
T Consensus 331 lt~-~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~-~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 331 LTF-QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GS-LDESPSFAPNGSMVLYATR 398 (433)
T ss_pred eec-CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CC-CCCCceECCCCCEEEEEEe
Confidence 322 222222333 88999888765433 6899999777654 3432 22 2456799999998776554
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-10 Score=78.37 Aligned_cols=132 Identities=12% Similarity=0.119 Sum_probs=111.1
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeec--cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 83 (150)
+...++-|...|.|-+|+...++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+.. ..+.+..+.. .+..
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~~~~-~~~~ 146 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRIWKE-QKPL 146 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeeeecc-CCCc
Confidence 44567788899999999999998876665 678899999999998899999999999999985 4577777777 6777
Q ss_pred eeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCC-----ccEEEecc
Q 031924 84 VDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASV-----LCFINSGF 142 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~s~~ 142 (150)
+.+++ .+++..+++++ ++|++||+.+++.+..+.+|.+ +|+++.|--+ |.++.+..
T Consensus 147 ~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa 208 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSA 208 (541)
T ss_pred cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeecc
Confidence 77777 89999998876 5899999999999999999988 7999999876 66666543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-11 Score=87.01 Aligned_cols=100 Identities=15% Similarity=0.247 Sum_probs=78.8
Q ss_pred cEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeee
Q 031924 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQP 117 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 117 (150)
.|..++|-|||..++.+. +..+.+||.. .+...+++++ |.+.|.+++ +.+|+.+++|+.|..|.+|+.+-...++.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~n-dG~llqtLKg-HKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTS-DGTLLQPLKG-HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCC-Cccccccccc-ccceEEEEEEccCCceeccCCCceeEEEecccccceeee
Confidence 789999999999988774 4579999985 5788999999 999999999 88999999999999999998754333222
Q ss_pred ccCCCCcceeEEEEcCCccEEEecccc
Q 031924 118 IAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 118 ~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
.|.+ .|.++.|+|-...|++|+++
T Consensus 91 --SH~D-~IQCMsFNP~~h~LasCsLs 114 (1081)
T KOG1538|consen 91 --SHND-AIQCMSFNPITHQLASCSLS 114 (1081)
T ss_pred --ccCC-eeeEeecCchHHHhhhcchh
Confidence 3445 46666666666666666654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.1e-13 Score=94.08 Aligned_cols=103 Identities=13% Similarity=0.233 Sum_probs=93.2
Q ss_pred eeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEe
Q 031924 30 QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVG 108 (150)
Q Consensus 30 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d 108 (150)
++.+.+|...|.|+.|...|.++++|+.|..++||.+. ...+.....| |...++.+. +.++-++++++.|..|++|.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e-t~~~lAs~rG-hs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME-TARCLASCRG-HSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeecc-chhhhccCCC-CccccchhccchhhhhhhhcccCceEEEEe
Confidence 35667899999999999999999999999999999974 5688899999 999999988 66777889999999999999
Q ss_pred ccCCeeeeeccCCCCcceeEEEEcCCc
Q 031924 109 ILPNRIIQPIAEHSEYPIESLGIASVL 135 (150)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (150)
+..+.++..+.+|.+ .|++++|+|--
T Consensus 261 l~~~~pvsvLrghtg-avtaiafsP~~ 286 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTG-AVTAIAFSPRA 286 (1113)
T ss_pred cCCCchHHHHhcccc-ceeeeccCccc
Confidence 999999999999999 59999999854
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-10 Score=82.26 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=103.2
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCC--Ce--eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRK--NT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
+++|.+++++++..||+|.+|.-.. +. ....+.-|.++|++++|+++|.+|.+|+..+-+-+|.+++.+ .+-++
T Consensus 212 ~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLP 289 (792)
T KOG1963|consen 212 ALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLP 289 (792)
T ss_pred EeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--ccccc
Confidence 6899999999999999999997543 21 345677889999999999999999999999999999987543 33334
Q ss_pred cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec---cCC--------CCcceeEEEEcCCccEEEeccccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI---AEH--------SEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~--------~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
- -..+|..+. ++++.+.+....|+.|.+....+......+ ... .+. .+.++++|..+.++-.+-.+
T Consensus 290 R-Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l-~t~~~idpr~~~~vln~~~g 367 (792)
T KOG1963|consen 290 R-LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL-TTGVSIDPRTNSLVLNGHPG 367 (792)
T ss_pred c-cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc-ceeEEEcCCCCceeecCCCc
Confidence 3 456777766 999999999999999999977544322222 111 222 56678888555555444433
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-10 Score=79.34 Aligned_cols=136 Identities=14% Similarity=0.068 Sum_probs=87.5
Q ss_pred eeecCcceEEEEcC---CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCC--eEEEEEcccccccccc
Q 031924 2 TFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSG--TVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~i~~~~~~~~~~~~ 75 (150)
+|+||++.|+..+. +..|.+||+.+++... +....+......|+|+|+.++ +.+.+| .|++||+.. ++ ...
T Consensus 210 ~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~-g~-~~~ 286 (433)
T PRK04922 210 AWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS-RQ-LTR 286 (433)
T ss_pred cCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC-CC-eEE
Confidence 68999999888763 3479999998876532 333344556789999999875 445555 588888753 23 333
Q ss_pred cccccccceeEee-ecCCCEEEEecC-CCc--EEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSE-NGL--ISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~-dg~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. +........ +++|+.++..+. +|. ++++++.+++.. .+..+... ...++|+|||++++..+.
T Consensus 287 lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~-~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 287 LTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNY-NARASVSPDGKKIAMVHG 355 (433)
T ss_pred Ccc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCC-ccCEEECCCCCEEEEEEC
Confidence 443 333333334 889998877653 444 666677665533 23223332 556899999999886543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-10 Score=78.77 Aligned_cols=137 Identities=13% Similarity=0.053 Sum_probs=88.4
Q ss_pred eeecCcceEEEEcCC---CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCC--eEEEEEcccccccccc
Q 031924 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSG--TVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~i~~~~~~~~~~~~ 75 (150)
.|+||+++|+.+..+ ..|.+||+.+++... +..+.+...+++|+|+|+.|+ +.+.++ .|++|++.. .....
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~--~~~~~ 272 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG--KQLTR 272 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC--CCEEE
Confidence 589999999877543 579999999875433 333445567789999998776 444444 577788752 22233
Q ss_pred cccccccceeE-eeecCCCEEEEecC-CC--cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 76 FVGLSPNSVDA-LLKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 76 ~~~~~~~~v~~-~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
+.. +...... ..+++++.|+..+. ++ .|+++|+.+++.. .+..+.. ....+.|+|+|++++.++..
T Consensus 273 l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~-~~~~~~~spdg~~i~~~~~~ 342 (417)
T TIGR02800 273 LTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGG-YNASPSWSPDGDLIAFVHRE 342 (417)
T ss_pred CCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC-CccCeEECCCCCEEEEEEcc
Confidence 333 3322222 23778888776554 33 5777788766543 3333334 36778999999998876654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-11 Score=79.60 Aligned_cols=99 Identities=9% Similarity=0.101 Sum_probs=76.4
Q ss_pred CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc-cccccccceeEeeecCCCEE
Q 031924 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR-FVGLSPNSVDALLKLDEDRV 95 (150)
Q Consensus 17 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~l 95 (150)
..+.+|....+ ....+.+|...++.++++||++++++++.|..|++-..... ..+.. +-| |..-|..+.-.++..|
T Consensus 132 ~~~di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-f~IesfclG-H~eFVS~isl~~~~~L 208 (390)
T KOG3914|consen 132 YSFDILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-FVIESFCLG-HKEFVSTISLTDNYLL 208 (390)
T ss_pred eeeeeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc-cchhhhccc-cHhheeeeeeccCcee
Confidence 33444444433 23344688899999999999999999999999999766433 33333 347 9999998887778889
Q ss_pred EEecCCCcEEEEeccCCeeeeec
Q 031924 96 ITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 96 ~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
++++.|+++++||+.+++.+..+
T Consensus 209 lS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eecCCCCcEEEEecccCCccccc
Confidence 99999999999999999877654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-10 Score=79.73 Aligned_cols=130 Identities=19% Similarity=0.195 Sum_probs=97.3
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc------cccccc
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF------VGLSPN 82 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~------~~~~~~ 82 (150)
-|++++....|+-+++++|+.+..+....+.++++..++...+|++|+.+|.+..||.+... ...++ .. |+.
T Consensus 147 Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks-rv~~l~~~~~v~s-~pg 224 (703)
T KOG2321|consen 147 DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS-RVGTLDAASSVNS-HPG 224 (703)
T ss_pred cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh-hheeeecccccCC-Ccc
Confidence 34444455588999999999888888778899999999999999999999999999987432 22222 12 222
Q ss_pred -----ceeEeee-cCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCC--ccEEEe
Q 031924 83 -----SVDALLK-LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASV--LCFINS 140 (150)
Q Consensus 83 -----~v~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s 140 (150)
.|+++.. .+|-.+++|+.+|.+.+||++..+++..-......||..+.|-+. +..++|
T Consensus 225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S 290 (703)
T KOG2321|consen 225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS 290 (703)
T ss_pred ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe
Confidence 3777774 458899999999999999999988766553333468888998765 334444
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.3e-10 Score=76.92 Aligned_cols=141 Identities=17% Similarity=0.129 Sum_probs=109.6
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeeeeeeccC---CCcEEEEEEE--------------------eCCCEEEeecCCCe
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS---EEELTSVVLM--------------------KNGRKVVCGSQSGT 60 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~v~~~~~~--------------------~~~~~l~~~~~d~~ 60 (150)
.|...+++....||.+++||...++....+... .+.-.+..|. .+...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 355678999999999999999998766555432 2333444443 12335778889999
Q ss_pred EEEEEcccccccccccc-cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEE
Q 031924 61 VLLYSWGYFKDCSDRFV-GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFI 138 (150)
Q Consensus 61 i~i~~~~~~~~~~~~~~-~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (150)
+.+|+.. .++...++. +.|.+.+.++. ..+-..|.+++.|+.+..|+...++.++.+..... .+.+++.+|||..+
T Consensus 82 v~~ys~~-~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVA-GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-LVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEec-CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-ccceEEEcCCCCEE
Confidence 9999985 456666665 33888999887 66778999999999999999999999999877766 49999999999999
Q ss_pred Eecccccc
Q 031924 139 NSGFLSLN 146 (150)
Q Consensus 139 ~s~~~~~~ 146 (150)
++++....
T Consensus 160 ~~as~~ik 167 (541)
T KOG4547|consen 160 LTASRQIK 167 (541)
T ss_pred EeccceEE
Confidence 98887644
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-11 Score=77.51 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=62.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~ 66 (150)
+.+.||++.+++++.|+.||+|..++.+++..++-|.+.+++++|+|+-..++.++.|+.|.+|++
T Consensus 257 vrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 257 VRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 356799999999999999999999999999999999999999999999999999999999999986
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-10 Score=73.30 Aligned_cols=102 Identities=13% Similarity=0.196 Sum_probs=82.6
Q ss_pred eEEE-EcCCCeEEEEEcCCCee--eeeeccCCCcEEEEEEEeCCCEEEeecCCCe-EEEEEcccccccccccc-cccccc
Q 031924 9 KLLG-TSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGYFKDCSDRFV-GLSPNS 83 (150)
Q Consensus 9 ~l~~-~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~~~~~~~~~~~~~~-~~~~~~ 83 (150)
+|+. |-.-|+|.|-|+...+. ...+..|...|.|++.+.+|..+++++..|+ |||||.. .+..++.+. |.....
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~-~g~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE-DGTLLQELRRGVDRAD 228 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC-CCcEeeeeecCCchhe
Confidence 3443 33679999999987655 3677899999999999999999999999987 6799986 456566554 324567
Q ss_pred eeEee-ecCCCEEEEecCCCcEEEEeccC
Q 031924 84 VDALL-KLDEDRVITGSENGLISLVGILP 111 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~~~dg~i~~~d~~~ 111 (150)
+.++. +|+..+|++++..|+++++.++.
T Consensus 229 iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 88888 99999999999999999998864
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-09 Score=75.48 Aligned_cols=137 Identities=15% Similarity=0.052 Sum_probs=82.0
Q ss_pred eeecCcceEEEEcC-CC----eEEEEEcCCC---eeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEccc--cc
Q 031924 2 TFAADAMKLLGTSG-DG----TLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGY--FK 70 (150)
Q Consensus 2 ~~~~~~~~l~~~~~-d~----~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~--~~ 70 (150)
+|+|||+.|+..+. +| .+..|++..+ +...............+|+|||+.|+..+ .+|...+|.+.. .+
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 69999998886542 22 3444676652 22222222223345679999999877554 567666665421 12
Q ss_pred ccccccccccccceeEee-ecCCCEEEEecCC---CcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 71 DCSDRFVGLSPNSVDALL-KLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 71 ~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
.....+.. ....+.... +|+|+.|+..+.+ ..|++||+.+++... +..... .+....|+|||+.|+..
T Consensus 317 ~~~~~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~-~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 317 QSPRLLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPE-NKESPSWAIDSLHLVYS 388 (428)
T ss_pred cceEEecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCC-CccceEECCCCCEEEEE
Confidence 22333433 333333433 8999988766543 368999998776543 333333 36788999999987743
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.9e-10 Score=76.77 Aligned_cols=135 Identities=18% Similarity=0.068 Sum_probs=86.1
Q ss_pred eeecCcceEE-EEcCCC--eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCC--eEEEEEcccccccccc
Q 031924 2 TFAADAMKLL-GTSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSG--TVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~--~i~i~~~~~~~~~~~~ 75 (150)
.|+||++.|+ +.+.++ .|.+||+++++. ..+..+........|+|||+.++..+ .+| .|+++|+. +...++
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~--g~~~~~ 328 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD--GSNPRR 328 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC--CCCeEE
Confidence 6999998776 444454 477778887754 34555555667789999999887665 344 56666764 333344
Q ss_pred cccccccceeEe-eecCCCEEEEecCC---CcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. ........ .+|+|+.++..+.+ ..|.+||+..+.. +.+.. .. .+..+.|+|||+.|+..+.
T Consensus 329 lt~-~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~-~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 329 ISF-GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GF-LVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred eec-CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CC-CCCCCeECCCCCEEEEEEc
Confidence 433 33333333 48899988776543 3677888755433 33322 22 3678899999998876443
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.9e-11 Score=77.30 Aligned_cols=129 Identities=17% Similarity=0.286 Sum_probs=95.9
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCe----eeeeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEccccccc---cc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNT----VQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDC---SD 74 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~---~~ 74 (150)
|...++++..|+.+|.|..+|++.+. ......-|.+.|+++..-. ++++|++.+.+|+|.+||.+.. ++ +.
T Consensus 260 f~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~V~ 338 (425)
T KOG2695|consen 260 FAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKSVM 338 (425)
T ss_pred hcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hccccee
Confidence 45567899999999999999998751 1222335788999998877 7899999999999999999754 44 66
Q ss_pred cccccccccee---EeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCC---cceeEEEEcC
Q 031924 75 RFVGLSPNSVD---ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE---YPIESLGIAS 133 (150)
Q Consensus 75 ~~~~~~~~~v~---~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---~~i~~~~~~~ 133 (150)
++.+ |-+.-. ....+....+++++.|...|+|.+++++.+.+++.... ..+.+++|+.
T Consensus 339 qYeG-HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 339 QYEG-HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eeec-ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 6667 654333 23356677888899999999999999998888753322 1255666653
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.23 E-value=8e-11 Score=53.97 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=35.9
Q ss_pred eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEE
Q 031924 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (150)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~ 65 (150)
+++..+.+|.+.|.+++|+|++++|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788899999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-09 Score=75.16 Aligned_cols=136 Identities=14% Similarity=0.049 Sum_probs=83.1
Q ss_pred eeecCcceEEEEcC-C--CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEe-ecCCCe--EEEEEcccccccccc
Q 031924 2 TFAADAMKLLGTSG-D--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGT--VLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~--i~i~~~~~~~~~~~~ 75 (150)
.|+||++.|+..+. + ..|.+||+.+++... +....+......|+|||+.|+. .+.++. |.++|+. +.....
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~--tg~~~~ 300 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA--TKALTR 300 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC--CCCeEE
Confidence 69999998887643 2 368889998876432 2222333457899999998864 556665 6666764 223334
Q ss_pred cccccccceeEee-ecCCCEEEEecC-CC--cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. +........ +++++.++..+. ++ .|+++|+.+++... +...... ....+|+|||++++..+.
T Consensus 301 lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~-~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 301 ITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQ-NLGGSITPDGRSMIMVNR 369 (448)
T ss_pred Ccc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCC-CcCeeECCCCCEEEEEEe
Confidence 443 333333333 888887766553 34 46666776665433 2222222 345789999998876544
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-09 Score=72.29 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=86.7
Q ss_pred ceE-EEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeE
Q 031924 8 MKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (150)
Q Consensus 8 ~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~ 86 (150)
+++ ++-..+++|.+.|..+.+.+.++......-..+.++|||+++++.+.||.+.++|+.+ .+.+.+++. ...+ ..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~-G~~~-~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKV-GGNP-RG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE--SSEE-EE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEec-CCCc-ce
Confidence 344 4556899999999999998888876544445578999999999999999999999964 467777765 4444 44
Q ss_pred ee-ecCCCEEEEec-CCCcEEEEeccCCeeeeeccCCC------CcceeEEEEcCCcc-EEE
Q 031924 87 LL-KLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHS------EYPIESLGIASVLC-FIN 139 (150)
Q Consensus 87 ~~-~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~~-~l~ 139 (150)
+. +++|++++++. ..+.+.++|.++.+.++.+.... ...+..+..+|... +++
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv 144 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVV 144 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEE
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEE
Confidence 54 89999988776 57899999999988888764321 11356666677666 443
|
... |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-09 Score=74.61 Aligned_cols=136 Identities=13% Similarity=0.020 Sum_probs=85.1
Q ss_pred eeecCcceEEEEcCC---CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCC--eEEEEEcccccccccc
Q 031924 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSG--TVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~i~~~~~~~~~~~~ 75 (150)
.|+||++.|+..+.+ ..|.+||+.+++... +....+......|+|+|+.|+ +.+.++ .|++||+.. .....
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~ 281 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS--RQLSR 281 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC--CCeEE
Confidence 689999988876533 468999998875433 333334455789999999886 444555 577778753 22333
Q ss_pred cccccccceeEe-eecCCCEEEEecC-CC--cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. +....... .+++++.++..+. ++ .|+++++.+++..+.. .... ......|+|||++++..+.
T Consensus 282 lt~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~-~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 282 VTN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGN-YNARPRLSADGKTLVMVHR 350 (430)
T ss_pred ccc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCC-CccceEECCCCCEEEEEEc
Confidence 443 33333333 3788887766553 33 5777787766643322 2112 2445789999999886553
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-09 Score=73.37 Aligned_cols=119 Identities=10% Similarity=0.105 Sum_probs=87.7
Q ss_pred CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEe--ecCCCeEEEEEcccccccccccccccccceeEee-ecCCC
Q 031924 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC--GSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDED 93 (150)
Q Consensus 17 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~ 93 (150)
.++++++++.......+. .+++|.++.|+|+++.|++ |-.-.++.+||++ +..+..+. +++-.++. +|.|+
T Consensus 251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~---egpRN~~~fnp~g~ 324 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFP---EGPRNTAFFNPHGN 324 (566)
T ss_pred ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCC---CCCccceEECCCCC
Confidence 367788877444444333 4789999999999987754 4466789999986 55555553 34455555 88999
Q ss_pred EEEEecC---CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 94 RVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 94 ~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
+++.++- -|.|-+||..+.+.+..+.... -+-..|+|||++++|+..+
T Consensus 325 ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~---tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN---TTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred EEEEeecCCCCCceEEEeccchhhccccccCC---ceEEEEcCCCcEEEEEecc
Confidence 8877663 4799999999988887775442 4457999999999998876
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-09 Score=69.40 Aligned_cols=145 Identities=12% Similarity=0.102 Sum_probs=94.1
Q ss_pred CeeecCcceEEEE-cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
+.|..|..+++++ ..++.|.+|++.+.+-...+......+..++|+|||+.+. +..-+-.|.+|.+.+. +. ..++-
T Consensus 54 ieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~-~~-~~~~~ 131 (447)
T KOG4497|consen 54 IEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ-KG-YLLPH 131 (447)
T ss_pred eeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc-ee-EEecc
Confidence 3577777766665 5788999999999888888888888999999999997765 5556789999998533 21 11111
Q ss_pred ccccceeEee-ecCCCEEEEecC------------------------------------CCcEEEEeccCCeeeeeccCC
Q 031924 79 LSPNSVDALL-KLDEDRVITGSE------------------------------------NGLISLVGILPNRIIQPIAEH 121 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~------------------------------------dg~i~~~d~~~~~~~~~~~~~ 121 (150)
....+.... .++|++.+..+. +..+.+||--- ....+..+
T Consensus 132 -pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L--eykv~aYe 208 (447)
T KOG4497|consen 132 -PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL--EYKVYAYE 208 (447)
T ss_pred -cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh--hheeeeee
Confidence 112233333 555554443332 11233343211 11112234
Q ss_pred CCcceeEEEEcCCccEEEeccccccccCC
Q 031924 122 SEYPIESLGIASVLCFINSGFLSLNVNPL 150 (150)
Q Consensus 122 ~~~~i~~~~~~~~~~~l~s~~~~~~v~~~ 150 (150)
.+.++..++|+|.+++|+.|+.++.++.|
T Consensus 209 ~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 209 RGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred eccceeEEEeccccceEEeeccchhhhhh
Confidence 44568899999999999999999877654
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.3e-10 Score=77.97 Aligned_cols=145 Identities=12% Similarity=0.013 Sum_probs=103.5
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCCCe--------eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccc
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 72 (150)
.|.+ +-..++.|+.+|.|.--+....+ .+.....|.+.+.++.++|-+..++..+.|.++++|........
T Consensus 354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P 433 (555)
T KOG1587|consen 354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP 433 (555)
T ss_pred eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc
Confidence 4555 45578888899998874433221 13345567889999999998766655555999999987523345
Q ss_pred ccccccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCC--eeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 73 SDRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPN--RIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+..+.. +...++.+. +| ....++++..||.+.+||+... .+......+.. ..+.+.|++.|+.|+.|...|++.
T Consensus 434 l~~~~~-~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~-~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 434 LLSLDS-SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSP-ALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred chhhhh-ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccc-ccceeecCCCCcEEEEecCCCcEE
Confidence 555555 677788877 66 3458888889999999999643 34444444433 578889999999999999988654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-09 Score=78.61 Aligned_cols=138 Identities=14% Similarity=0.085 Sum_probs=105.9
Q ss_pred cCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCC----cEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE----ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
-+.++++....++.+-+||...+.....+...+- ...-+.++++.-++++|+.-+.+.+|++... +.-..+.+ |
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d-n~p~~l~G-H 174 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED-NKPIRLKG-H 174 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc-CCcceecc-c
Confidence 3567888888899999999988766655544322 1222334566778899999999999998633 33336788 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeee-eccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
++.+..+. +.+|+++++.+.|..+|+|++.+.+... ..-.|.. .+..+.|.|. .++|++-+-..
T Consensus 175 eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa-Rvw~~~~~~n--~i~t~gedctc 240 (967)
T KOG0974|consen 175 EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA-RVWACCFLPN--RIITVGEDCTC 240 (967)
T ss_pred CCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc-eeEEEEeccc--eeEEeccceEE
Confidence 99999998 8899999999999999999999887665 4447877 6999999998 88888766443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4e-10 Score=73.22 Aligned_cols=136 Identities=7% Similarity=0.018 Sum_probs=98.9
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
.|||+|+++++++.- ++-|-|.++-+..+.+. .-+.|.-+.|..|..+++++ ..++.|.+|++... .-..++.. .
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckIde-g 90 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKIDE-G 90 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEecc-C
Confidence 689999999999665 88999988765443332 24567778898888888776 46779999999643 44455555 5
Q ss_pred ccceeEee-ecCCCEEEE-ecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 81 PNSVDALL-KLDEDRVIT-GSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
...+..+. +|+|+.+.. ..-+-+|.+|.+.+.+.... .|....+..++|+|||++.+.++.
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~--~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL--PHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe--cccccCceeEEECCCCceeeeeec
Confidence 66677666 999976655 45588999999987665332 233334788999999999887653
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-09 Score=72.76 Aligned_cols=138 Identities=16% Similarity=0.062 Sum_probs=86.3
Q ss_pred CeeecCcceEEE-EcCC--CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC-CC--eEEEEEccccccccc
Q 031924 1 MTFAADAMKLLG-TSGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSD 74 (150)
Q Consensus 1 i~~~~~~~~l~~-~~~d--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~ 74 (150)
++|+||++.|+. .+.+ ..|.+||+.+++.. .+..+........|+|+|++|+..+. ++ .|.++++.. ....
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~ 315 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--GEVR 315 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCEE
Confidence 368999987764 4444 45888998877543 33334444456789999998875543 44 466666642 2223
Q ss_pred ccccccccceeEee-ecCCCEEEEecCCC---cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
++.. +........ +++++.++..+.++ .|.+||+.++.. +.+... . ......|+|||+.|+..+...
T Consensus 316 ~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~-~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 316 RLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-G-LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred Eeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-C-CCCCceECCCCCEEEEEEeCC
Confidence 3332 333333333 88999888877765 788889877543 333222 2 245568999999888766543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-08 Score=69.76 Aligned_cols=135 Identities=17% Similarity=0.171 Sum_probs=79.7
Q ss_pred eeecCcceEEE-EcCCCe--EEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCe--EEEEEcccccccccc
Q 031924 2 TFAADAMKLLG-TSGDGT--LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGT--VLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~-~~~d~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~--i~i~~~~~~~~~~~~ 75 (150)
.|+||++.|+. .+.++. |.++|+++++.. .+..+........|+|||++++..+ .++. +.++|+.. ++ ..+
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~ 344 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSR 344 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 69999998875 445554 777888877543 3444445567789999999886554 3454 44455532 22 222
Q ss_pred ccccccc-ceeEeeecCCCEEEEecC-CC--cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPN-SVDALLKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~-~v~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. ... ......+++|+.++..+. ++ .|.++|+.+++. ..+... . ......|+|||+.|+..+.
T Consensus 345 Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~-~-~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 345 LTF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTST-R-LDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred Eec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCC-C-CCCCceECCCCCEEEEEEe
Confidence 221 111 112234889988877654 34 455568776654 333222 1 1234589999998776543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.2e-08 Score=66.54 Aligned_cols=130 Identities=13% Similarity=0.080 Sum_probs=96.1
Q ss_pred cCcceEEEEcCCC-eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccc
Q 031924 5 ADAMKLLGTSGDG-TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (150)
Q Consensus 5 ~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 83 (150)
-+++-++.|..|| .+-+||..+++ .++++..-+.|.++..+++|++++++.....+.++|+.+ +.....-+. ...-
T Consensus 369 ~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-gnv~~idkS-~~~l 445 (668)
T COG4946 369 VDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GNVRLIDKS-EYGL 445 (668)
T ss_pred cCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CCeeEeccc-ccce
Confidence 3556777888888 89999999885 445566778999999999999999999989999999863 332222223 4566
Q ss_pred eeEee-ecCCCEEEEecCCC----cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEE
Q 031924 84 VDALL-KLDEDRVITGSENG----LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (150)
|+.+. ++++++++-+--+| .|+++|+..++....-... .. -.+-+|.||+++|-
T Consensus 446 Itdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t-a~-DfsPaFD~d~ryLY 504 (668)
T COG4946 446 ITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT-AY-DFSPAFDPDGRYLY 504 (668)
T ss_pred eEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc-cc-ccCcccCCCCcEEE
Confidence 77776 88999999887776 6899999888866544321 21 33568899998764
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-07 Score=62.86 Aligned_cols=142 Identities=11% Similarity=0.134 Sum_probs=87.9
Q ss_pred CeeecCcceEEEEc-CCCeEEEEEcCCCe--ee--eeec-cCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEccc-cc--
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNT--VQ--TRSE-FSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGY-FK-- 70 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~d~~~~~--~~--~~~~-~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~-~~-- 70 (150)
+.|+|+++++++.. +...|.+|++.... .. ..+. ......+.+.|+|+++++++. -.++.|.+|++.. .+
T Consensus 149 v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence 36899999888764 56699999997754 21 2222 334467899999999988655 4678999998861 22
Q ss_pred ccccccccc-----cccceeEee-ecCCCEEEEec-CCCcEEEEeccC--Ce--eeeeccCCCCcceeEEEEcCCccEEE
Q 031924 71 DCSDRFVGL-----SPNSVDALL-KLDEDRVITGS-ENGLISLVGILP--NR--IIQPIAEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 71 ~~~~~~~~~-----~~~~v~~~~-~~~~~~l~~~~-~dg~i~~~d~~~--~~--~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (150)
+..+.+... .......+. +++|++|+++. ..+.|.+|++.. ++ .+..+..... ..+.++++|+|++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~-~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK-FPRHFAFSPDGRYLY 307 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS-SEEEEEE-TTSSEEE
T ss_pred eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC-CccEEEEeCCCCEEE
Confidence 122222210 011334455 89999876655 567899999842 33 3334433333 378899999999988
Q ss_pred eccc
Q 031924 140 SGFL 143 (150)
Q Consensus 140 s~~~ 143 (150)
.+..
T Consensus 308 Va~~ 311 (345)
T PF10282_consen 308 VANQ 311 (345)
T ss_dssp EEET
T ss_pred EEec
Confidence 7764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-08 Score=68.56 Aligned_cols=135 Identities=17% Similarity=0.150 Sum_probs=81.8
Q ss_pred eeecCcceEEE-EcCCC--eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCC--eEEEEEcccccccccc
Q 031924 2 TFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSG--TVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~--~i~i~~~~~~~~~~~~ 75 (150)
.|+||++.|+. .+.++ .|.++|+.+++.. .+..+........|+|+|+.++..+ .++ .|+++++.. ++ ..+
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~ 325 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AER 325 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 69999998874 44444 6888899887543 3444445556778999999876554 344 455566542 22 222
Q ss_pred ccccccccee-EeeecCCCEEEEecC-CC--cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVD-ALLKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~-~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. ...... ...+++++.++..+. ++ .|.++|+.+++. ..+.. .. ......|+|||+.++..+.
T Consensus 326 lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~-~~-~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 326 VTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD-TS-LDESPSVAPNGTMLIYATR 393 (430)
T ss_pred eec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccC-CC-CCCCceECCCCCEEEEEEe
Confidence 221 111111 233788888877654 33 577889877654 33322 12 1335689999998876553
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.6e-09 Score=69.95 Aligned_cols=116 Identities=9% Similarity=0.003 Sum_probs=89.2
Q ss_pred eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-----cccccccccccccceeEee-ecCCCEEEEecCCCcE
Q 031924 31 TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-----KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLI 104 (150)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-----~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i 104 (150)
+.+.+|.+.|+++.|+.++++|++|+.|..+++|.+... .+.++.....|...|.|+. ...++.+.+|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 345678899999999999999999999999999998521 1223332221557788888 5667789999999999
Q ss_pred EEEeccCCeeeeeccCCC--CcceeEEEEcCCccEEEeccccccc
Q 031924 105 SLVGILPNRIIQPIAEHS--EYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 105 ~~~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
..-|+.+.+.+..+.... + .|..+..+|..+.+++.+.++.|
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~-~VY~m~~~P~DN~~~~~t~~~~V 173 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRG-DVYHMDQHPTDNTLIVVTRAKLV 173 (609)
T ss_pred EeeecccceeeeeecccCccc-ceeecccCCCCceEEEEecCceE
Confidence 999999998887773322 2 48899999988888877766544
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-07 Score=64.44 Aligned_cols=134 Identities=10% Similarity=0.035 Sum_probs=101.1
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCC-eEEEEEcccccccccccccccccce
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG-TVLLYSWGYFKDCSDRFVGLSPNSV 84 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~~~v 84 (150)
+|.+++..|. |+..+.+.-.+-.++ .++...|.-..+..+++.++.|..|| .+-+||.+ +-..+++.. .-+.|
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~--~~e~kr~e~-~lg~I 404 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD--GGEVKRIEK-DLGNI 404 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecC--CceEEEeeC-Cccce
Confidence 5777777754 466676655553333 25566788888888888999999998 99999985 334445554 56678
Q ss_pred eEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 85 DALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 85 ~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
.++. +++|+.++.+.....+.+.|+.++.....-+...+. |+...|+|+++++|-+.-++-
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~l-Itdf~~~~nsr~iAYafP~gy 466 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGL-ITDFDWHPNSRWIAYAFPEGY 466 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccce-eEEEEEcCCceeEEEecCcce
Confidence 8887 899999999999999999999988764444444454 999999999999998876553
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-09 Score=82.46 Aligned_cols=113 Identities=13% Similarity=0.128 Sum_probs=87.6
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeeeeeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-------------
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF------------- 69 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~------------- 69 (150)
+|...+.++|+.||.+++|....++.+.... .-...++.+.|+.+|+.+..+..||.+.+|.....
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~ 2296 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALS 2296 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCcccc
Confidence 4667788999999999999988776554332 22378999999999999999999999999976421
Q ss_pred ------------------------------c-ccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeee
Q 031924 70 ------------------------------K-DCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQP 117 (150)
Q Consensus 70 ------------------------------~-~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 117 (150)
. ..+. +. |....+++. .|+.+++++|+.+|.|++||++..+..+.
T Consensus 2297 Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~-H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~ 2373 (2439)
T KOG1064|consen 2297 DFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TC-HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHT 2373 (2439)
T ss_pred ceeeeehhhhccccCCCCCcccchhcccCcccceee--ee-cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHH
Confidence 0 0111 34 777888888 78889999999999999999987776665
Q ss_pred cc
Q 031924 118 IA 119 (150)
Q Consensus 118 ~~ 119 (150)
++
T Consensus 2374 ~~ 2375 (2439)
T KOG1064|consen 2374 FQ 2375 (2439)
T ss_pred hh
Confidence 53
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-07 Score=61.03 Aligned_cols=139 Identities=14% Similarity=0.131 Sum_probs=94.3
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCC------CcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-ccccccccccc
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE------EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRFVGLSP 81 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~ 81 (150)
.++-+..+|.|.+|..........+.+-. ..-.++.|++.+..++++..+|.+.+-+..... +..+..+. |+
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He 165 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HE 165 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc-cc
Confidence 44556677788887655433222222211 124578889999999999999999955542221 33446677 76
Q ss_pred cceeEee--ecCCCEEEEecCCCcEEEEecc-CCeeeee-ccCCCCcceeEEEEcC-CccEEEeccccccccC
Q 031924 82 NSVDALL--KLDEDRVITGSENGLISLVGIL-PNRIIQP-IAEHSEYPIESLGIAS-VLCFINSGFLSLNVNP 149 (150)
Q Consensus 82 ~~v~~~~--~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~-~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v~~ 149 (150)
-..-... ..+.+++.+|+.|+.+..||++ +++.+.. .+.|.. +|.++.-+| ++.++++|+.+-.+..
T Consensus 166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-GV~SI~ss~~~~~~I~TGsYDe~i~~ 237 (339)
T KOG0280|consen 166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-GVVSIYSSPPKPTYIATGSYDECIRV 237 (339)
T ss_pred eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec-ceEEEecCCCCCceEEEeccccceee
Confidence 5554433 4466899999999999999998 5554443 456655 688888775 6889999998877654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-09 Score=69.44 Aligned_cols=130 Identities=13% Similarity=0.167 Sum_probs=93.8
Q ss_pred EEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc----cccccccccccccceeE
Q 031924 11 LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----KDCSDRFVGLSPNSVDA 86 (150)
Q Consensus 11 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----~~~~~~~~~~~~~~v~~ 86 (150)
++.+.+-.+-+-|++++- ...+. ..+.|.++.|...++.++.|+.+|.|..+|++.. +.+.+.+ - |+..+++
T Consensus 228 fs~G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-y-h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-Y-HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-E-cCcchhh
Confidence 455577788888988873 22333 5678999999998999999999999999999754 3344444 3 7888998
Q ss_pred ee--ecCCCEEEEecCCCcEEEEeccCCee---eeeccCCCCcc-eeEEEEcCCccEEEecccc
Q 031924 87 LL--KLDEDRVITGSENGLISLVGILPNRI---IQPIAEHSEYP-IESLGIASVLCFINSGFLS 144 (150)
Q Consensus 87 ~~--~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~-i~~~~~~~~~~~l~s~~~~ 144 (150)
+. ...++.|++.+.+|.|++||.+--++ ++.+.+|.... -.-+.+.+....+++++.+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence 86 44678999999999999999986555 77777775421 1123345555666666544
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.2e-07 Score=61.08 Aligned_cols=147 Identities=12% Similarity=0.107 Sum_probs=91.0
Q ss_pred CeeecCcceEEEEcC----CCeEEEEEcCCC--ee--eeeeccCCCcEEEEEEEeCCCEEEeecC-CCeEEEEEcccccc
Q 031924 1 MTFAADAMKLLGTSG----DGTLSVCNLRKN--TV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~----d~~i~i~d~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~ 71 (150)
++++|++++|++... ++.|..|.+... +. +.+..........++++|++++++++.. +|.+.++++...+.
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 467899999998865 579999988764 32 3333323445677899999999988874 79999999975443
Q ss_pred cccc---cc--c--c-----cccceeEee-ecCCCEEEEec-CCCcEEEEeccCCe--e--eeeccCCCCcceeEEEEcC
Q 031924 72 CSDR---FV--G--L-----SPNSVDALL-KLDEDRVITGS-ENGLISLVGILPNR--I--IQPIAEHSEYPIESLGIAS 133 (150)
Q Consensus 72 ~~~~---~~--~--~-----~~~~v~~~~-~~~~~~l~~~~-~dg~i~~~d~~~~~--~--~~~~~~~~~~~i~~~~~~~ 133 (150)
.... +. + . ......++. .|+++++++.. ....|++|++.... . ...+....+...+.++|+|
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p 201 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP 201 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC
Confidence 2221 10 0 0 012233444 88998777654 35589999886543 2 2223333344688999999
Q ss_pred CccEEE-eccccccc
Q 031924 134 VLCFIN-SGFLSLNV 147 (150)
Q Consensus 134 ~~~~l~-s~~~~~~v 147 (150)
+++++. ..-.+..|
T Consensus 202 dg~~~Yv~~e~s~~v 216 (345)
T PF10282_consen 202 DGKYAYVVNELSNTV 216 (345)
T ss_dssp TSSEEEEEETTTTEE
T ss_pred CcCEEEEecCCCCcE
Confidence 998764 43444433
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-08 Score=75.16 Aligned_cols=87 Identities=14% Similarity=0.198 Sum_probs=61.8
Q ss_pred EEcCCCeeeeeeccCCCcEEEEEEEeCC-CEEEeecCCCeEEEEEccccc------ccccccccccccceeEee-ecCCC
Q 031924 22 CNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFK------DCSDRFVGLSPNSVDALL-KLDED 93 (150)
Q Consensus 22 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~------~~~~~~~~~~~~~v~~~~-~~~~~ 93 (150)
|..+ |..+..+..|...+..++.++.. .+|++|+.||+|++|+.+... +...++.. ....+.++. -..++
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCC
Confidence 4433 55778888888888888888765 999999999999999986321 11222222 244555655 55777
Q ss_pred EEEEecCCCcEEEEecc
Q 031924 94 RVITGSENGLISLVGIL 110 (150)
Q Consensus 94 ~l~~~~~dg~i~~~d~~ 110 (150)
.++.++.||.|++.++.
T Consensus 1112 ~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred eEEEEcCCCeEEEEEcc
Confidence 88888888888887654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-08 Score=71.94 Aligned_cols=138 Identities=15% Similarity=0.142 Sum_probs=100.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe---------------eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEE
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---------------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~ 65 (150)
+.|+.+..+|++|+.||.+++..+.+.. ..+.+++|.+.|.-+.|+.+.+.|.+...+|-|.+|.
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWm 99 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWM 99 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEe
Confidence 3688899999999999999999876531 1256789999999999999999999999999999999
Q ss_pred cccccccccccc-cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 66 WGYFKDCSDRFV-GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 66 ~~~~~~~~~~~~-~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
+- .+.....+. ....+.|.++. ..+|..++....||.|.+=.++.++....-- .+.....+.|++|.+.+..+
T Consensus 100 ly-kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL--kg~~l~hv~ws~D~~~~Lf~ 174 (1189)
T KOG2041|consen 100 LY-KGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL--KGQLLAHVLWSEDLEQALFK 174 (1189)
T ss_pred ee-cccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc--chheccceeecccHHHHHhh
Confidence 85 444444433 21344556666 7799999999999999888776554432211 11125567788877655433
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4e-07 Score=63.06 Aligned_cols=134 Identities=18% Similarity=0.169 Sum_probs=82.3
Q ss_pred eeecCcce-EEEEcC---CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEe-ecCC--CeEEEEEccccccccc
Q 031924 2 TFAADAMK-LLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQS--GTVLLYSWGYFKDCSD 74 (150)
Q Consensus 2 ~~~~~~~~-l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--~~i~i~~~~~~~~~~~ 74 (150)
.|+||++. ++..+. +..|.++|+.+++..... ...+......|+|||+.++. .+.+ ..|.++++. . ....
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~-~-g~~~ 270 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN-T-KTLT 270 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC-C-CcEE
Confidence 58999984 554432 467999999888654333 34555667889999987754 4434 456666764 2 2233
Q ss_pred cccccccc-ceeEeeecCCCEEEEecC-CC--cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 75 RFVGLSPN-SVDALLKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 75 ~~~~~~~~-~v~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
.+.. +.. ......+|+|+.|+..+. .+ .|++.|+.+++..+.. ..... ...|+|||++++..+.
T Consensus 271 ~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-~~g~~---~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 271 QITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-FHGKN---NSSVSTYKNYIVYSSR 338 (419)
T ss_pred Eccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc-cCCCc---CceECCCCCEEEEEEc
Confidence 4433 332 222334889987766653 33 6777788776654433 22121 2489999998876554
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.8e-07 Score=58.22 Aligned_cols=134 Identities=10% Similarity=-0.022 Sum_probs=93.1
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCe-e-ee-eeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc---
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNT-V-QT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--- 75 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~-~-~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--- 75 (150)
++++|++++++.+....|..|.+.... . .. .....++.-.+..|+.....++++.+||++.|||++..+.....
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss 244 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS 244 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence 578999999999999999999887632 2 22 33445556678899999999999999999999999865433222
Q ss_pred -cccccccceeEee-ecCC--CEEEEecCCCcEEEEeccCCeeeeeccC-------CCCcceeEEEEcCCcc
Q 031924 76 -FVGLSPNSVDALL-KLDE--DRVITGSENGLISLVGILPNRIIQPIAE-------HSEYPIESLGIASVLC 136 (150)
Q Consensus 76 -~~~~~~~~v~~~~-~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~ 136 (150)
-+. |.+.+..+. ++.| .+|...-.-+.+.+.|+++.+..+.+.. |....|....|+.++.
T Consensus 245 trp~-hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 245 TRPH-HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred cCCC-CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence 234 677777665 5443 3566556678999999998775554422 2222356666666554
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.8e-09 Score=71.72 Aligned_cols=145 Identities=17% Similarity=0.194 Sum_probs=105.8
Q ss_pred eeecC-cceEEEEcCCCeEEEEEcCCCe------eeeee------ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc
Q 031924 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNT------VQTRS------EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (150)
Q Consensus 2 ~~~~~-~~~l~~~~~d~~i~i~d~~~~~------~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 68 (150)
+.+|. ..++++++.|..+++||.+.-. .+..+ ....-.|++++|+.++.-+.+...|-.|++|.-..
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 44563 4488889999999999976521 11111 12233689999998877777777888899985321
Q ss_pred c-c----------ccccc-ccccccccee--Eee--ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEc
Q 031924 69 F-K----------DCSDR-FVGLSPNSVD--ALL--KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIA 132 (150)
Q Consensus 69 ~-~----------~~~~~-~~~~~~~~v~--~~~--~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~ 132 (150)
. + +.... +++ |.+.-+ .+- -|...++++|+..|.|.+|+-.+++.++.+.+... -|+|+.-+
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKG-HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpH 445 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKG-HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPH 445 (559)
T ss_pred ccCCCCCCCcchhhccchhhcc-cccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eEeccCCC
Confidence 1 1 22233 667 765433 332 56788999999999999999999999998877666 59999999
Q ss_pred CCccEEEecccccccc
Q 031924 133 SVLCFINSGFLSLNVN 148 (150)
Q Consensus 133 ~~~~~l~s~~~~~~v~ 148 (150)
|--.+||+.+.+..|.
T Consensus 446 P~~PvLAsSGid~DVK 461 (559)
T KOG1334|consen 446 PHLPVLASSGIDHDVK 461 (559)
T ss_pred CCCchhhccCCcccee
Confidence 9999999999988774
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-07 Score=65.19 Aligned_cols=129 Identities=12% Similarity=0.145 Sum_probs=77.9
Q ss_pred eeecCcceEEEEc-CCCeEEEE--EcCC-CeeeeeeccCCCcEEEEEEEeCCCEEEeecCC---CeEEEEEccccccccc
Q 031924 2 TFAADAMKLLGTS-GDGTLSVC--NLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS---GTVLLYSWGYFKDCSD 74 (150)
Q Consensus 2 ~~~~~~~~l~~~~-~d~~i~i~--d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~~~~~~~~~~~ 74 (150)
.|+|||+.|+..+ .++...+| ++.. +.....+......+....|+|||++|+....+ ..|.+||+.. ++. .
T Consensus 287 ~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~ 364 (428)
T PRK01029 287 SFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-Y 364 (428)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-E
Confidence 6999999877665 46655555 4432 22233444444566788999999988765433 4688899853 232 3
Q ss_pred ccccccccceeEee-ecCCCEEEEecC---CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCc
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVL 135 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (150)
.+.. ....+.... +++|+.|+.... ...++++|+..++..... ...+ .+...+|+|-.
T Consensus 365 ~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g-~~~~p~Ws~~~ 426 (428)
T PRK01029 365 QLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSG-EKRFPSWGAFP 426 (428)
T ss_pred EccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCC-cccCceecCCC
Confidence 3332 222333333 788887765432 346888898776654433 3334 36678888754
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-08 Score=46.60 Aligned_cols=37 Identities=24% Similarity=0.507 Sum_probs=33.5
Q ss_pred ccccccccccccceeEee-ecCCCEEEEecCCCcEEEEe
Q 031924 71 DCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVG 108 (150)
Q Consensus 71 ~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d 108 (150)
+++.++.+ |...|.++. .|+++.|++++.|+.|++||
T Consensus 2 ~~~~~~~~-h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRG-HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEES-SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcC-CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45677888 999999999 89999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3e-07 Score=58.63 Aligned_cols=126 Identities=8% Similarity=-0.059 Sum_probs=82.3
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc--ccccccceeE
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF--VGLSPNSVDA 86 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~~~v~~ 86 (150)
.+..++.|.++++.+++-+.....+....-....+.++++++++++.+....|..|.+...+..+..+ .. ..+.-.+
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~-t~D~gF~ 208 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP-TSDHGFY 208 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc-cCCCcee
Confidence 34556677777777776543222221111237899999999999999999999999886544333222 11 2222223
Q ss_pred ee-ecCCCEEEEecCCCcEEEEeccCCe-eee----eccCCCCcceeEEEEcCCcc
Q 031924 87 LL-KLDEDRVITGSENGLISLVGILPNR-IIQ----PIAEHSEYPIESLGIASVLC 136 (150)
Q Consensus 87 ~~-~~~~~~l~~~~~dg~i~~~d~~~~~-~~~----~~~~~~~~~i~~~~~~~~~~ 136 (150)
.. +.+...++++.+||++.+||++... +.. .-+.|.+ .++.+.|++.|.
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG-a~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG-AFRVCRFSLYGL 263 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC-ceEEEEecCCCc
Confidence 33 6677899999999999999998644 222 2234666 599999998553
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.5e-07 Score=62.40 Aligned_cols=134 Identities=12% Similarity=0.073 Sum_probs=79.9
Q ss_pred eeecCcceEEEE-c--CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCC--eEEEEEcccccccccc
Q 031924 2 TFAADAMKLLGT-S--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSG--TVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~~-~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~--~i~i~~~~~~~~~~~~ 75 (150)
.|+||++.++.. + .+..|.++|+..++.. .+......-....|+|||+.++-.+ ..+ .|.+.|+.. ++ .++
T Consensus 239 ~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~-~~r 315 (419)
T PRK04043 239 DVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GS-VEQ 315 (419)
T ss_pred EECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CC-eEe
Confidence 589999877654 2 3457888898877533 3433333334567999998876554 444 455556542 22 222
Q ss_pred cccccccceeEeeecCCCEEEEecCC---------CcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVDALLKLDEDRVITGSEN---------GLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. .... ....+|+|+.++..+.. ..|.+.|+.++.. +.+... . ......|+|||+.++....
T Consensus 316 lt~-~g~~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~-~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 316 VVF-HGKN-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-G-VNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred Ccc-CCCc-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-C-CcCCeEECCCCCEEEEEEc
Confidence 221 1111 22448999987766543 2677788877654 344333 2 2446889999998775543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.9e-07 Score=67.65 Aligned_cols=147 Identities=11% Similarity=0.055 Sum_probs=92.1
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCeeeeee--------cc------CCCcEEEEEEEeCCCEE-EeecCCCeEEEE
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRS--------EF------SEEELTSVVLMKNGRKV-VCGSQSGTVLLY 64 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------~~------~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~ 64 (150)
++|+| ++..+++...++.|++||..++...... .+ .-.....++++|+++.+ ++-+.++.|++|
T Consensus 688 Va~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~ 767 (1057)
T PLN02919 688 VCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL 767 (1057)
T ss_pred EEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence 46788 4556666678899999998876532110 00 11245679999998855 455667999999
Q ss_pred Ecccccccc------------ccccc---c----cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccC----
Q 031924 65 SWGYFKDCS------------DRFVG---L----SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAE---- 120 (150)
Q Consensus 65 ~~~~~~~~~------------~~~~~---~----~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---- 120 (150)
|+...+... ..+-. . .-.....+. .++|+++++-+.++.|++||..++........
T Consensus 768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G 847 (1057)
T PLN02919 768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG 847 (1057)
T ss_pred ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC
Confidence 985322110 00000 0 000112344 67888888888999999999987665432210
Q ss_pred ---------CCCcceeEEEEcCCccEEEecccccccc
Q 031924 121 ---------HSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 121 ---------~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.-. ....++++++|+++++-+.+..|.
T Consensus 848 ~~dG~~~~a~l~-~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 848 FKDGKALKAQLS-EPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred CCCCcccccccC-CceEEEEeCCCCEEEEECCCCEEE
Confidence 111 367899999999888777666554
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.2e-08 Score=69.99 Aligned_cols=141 Identities=12% Similarity=0.019 Sum_probs=98.8
Q ss_pred cCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC---------CCeEEEEEcccccccccc
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~i~~~~~~~~~~~~ 75 (150)
.+++.+.+|...|+|.+-|.++.+.++.+..|.+.+.++. -.|+.|++++. |..+++||++.. +.+..
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~P 261 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSP 261 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhh-hccCC
Confidence 3578899999999999999999999999999999988764 46888888764 567899999744 33333
Q ss_pred cccccccc-eeEeeecCCCEEEEecCCCcEEEEeccC--CeeeeeccCCC-CcceeEEEEcCCccEEEeccccccccC
Q 031924 76 FVGLSPNS-VDALLKLDEDRVITGSENGLISLVGILP--NRIIQPIAEHS-EYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 76 ~~~~~~~~-v~~~~~~~~~~l~~~~~dg~i~~~d~~~--~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
+.- +..+ ...+...-...++..+..|...+.|..+ .........+. +..+..++++++|+.+|.|...+.||.
T Consensus 262 I~~-~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 262 IQF-PYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL 338 (1118)
T ss_pred ccc-ccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence 322 2222 1111122335677788899999998432 12122222222 213999999999999999999998874
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-08 Score=63.88 Aligned_cols=138 Identities=14% Similarity=0.123 Sum_probs=87.2
Q ss_pred cceEEEEcCCCeEEEEEcCCCee-eeeeccCCCcEEEEEEEeCCCEEEeecC-----CCeEEEEEccccccccccccccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKNGRKVVCGSQ-----SGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++.++++..||.+.+++.+.-.. ..++........+.++...++.+.++.. -+..+.|+++..+....... .
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~--~ 178 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK--A 178 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc--c
Confidence 56788899999999999876211 1222222222334444455665555432 23456666643222221111 2
Q ss_pred ccceeEee-ec-CCCEEEEecCCCcEEEEeccCCe-eeeeccCCCCcceeEEEEcC-CccEEEeccccccc
Q 031924 81 PNSVDALL-KL-DEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLGIAS-VLCFINSGFLSLNV 147 (150)
Q Consensus 81 ~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v 147 (150)
...+.+++ .| ..+.+++|+.||.+-+||.+... +...+.+|+. ++..+.|+| ++..|.+++.+|.+
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~-~i~eV~FHpk~p~~Lft~sedGsl 248 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA-EIWEVHFHPKNPEHLFTCSEDGSL 248 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhh-hhhheeccCCCchheeEecCCCcE
Confidence 33477777 44 56688889999999999998764 4455678877 699999998 66788888887754
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.8e-07 Score=64.25 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=63.0
Q ss_pred EEEcCCCeee---eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEE
Q 031924 21 VCNLRKNTVQ---TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVI 96 (150)
Q Consensus 21 i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~ 96 (150)
+|++..++.. .........+.+++++|+...++.|+.||+|.+||... . ..+... ..-..+.+. +|+|..++
T Consensus 240 iYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~--~-~t~~~k-a~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 240 IYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTR--G-VTLLAK-AEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCC--C-eeeeee-ecccceEEEEcCCCcEEE
Confidence 5666554432 12224567899999999999999999999999999742 2 222222 333344555 88999999
Q ss_pred EecCCCcEEEEeccC
Q 031924 97 TGSENGLISLVGILP 111 (150)
Q Consensus 97 ~~~~dg~i~~~d~~~ 111 (150)
+|+..|.+.+||+.-
T Consensus 316 V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 316 VGSEQGELQCFDMAL 330 (545)
T ss_pred EEcCCceEEEEEeec
Confidence 999999999999853
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.8e-06 Score=54.00 Aligned_cols=139 Identities=8% Similarity=0.050 Sum_probs=88.7
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCC--eeeee---eccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKN--TVQTR---SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
+.+.+|+.||.. .|..|.|-..+.. ..+.+ -+....+-+.++|+||+..|+.+...|+|++||+. +..+..+
T Consensus 4 ~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~--g~~lf~I 80 (282)
T PF15492_consen 4 ALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM--GSELFVI 80 (282)
T ss_pred eecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecc--cceeEEc
Confidence 456789998888 8888888876653 12222 22334467899999999999999999999999985 3333333
Q ss_pred ccc------cccceeEee--ecC-----CCEEEEecCCCcEEEEeccC-----Ceeeee--ccCCCCcceeEEEEcCCcc
Q 031924 77 VGL------SPNSVDALL--KLD-----EDRVITGSENGLISLVGILP-----NRIIQP--IAEHSEYPIESLGIASVLC 136 (150)
Q Consensus 77 ~~~------~~~~v~~~~--~~~-----~~~l~~~~~dg~i~~~d~~~-----~~~~~~--~~~~~~~~i~~~~~~~~~~ 136 (150)
+.. -...|..+. ... ...|++-..+|.++-|-+.. .+.... +..|-...|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 320 123344333 111 12566667788888776522 122222 2233233699999999988
Q ss_pred EEEeccc
Q 031924 137 FINSGFL 143 (150)
Q Consensus 137 ~l~s~~~ 143 (150)
+|..||-
T Consensus 161 LLlVgG~ 167 (282)
T PF15492_consen 161 LLLVGGC 167 (282)
T ss_pred EEEEecc
Confidence 8776664
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.5e-06 Score=54.16 Aligned_cols=147 Identities=11% Similarity=0.164 Sum_probs=90.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc-------CCCcEEEEEEEeC------CCEEEeecCCCeEEEEEcc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-------SEEELTSVVLMKN------GRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~------~~~l~~~~~d~~i~i~~~~ 67 (150)
++||||+.+|+.+...|+|++||+...... .+.. ....|..+.|.+- ...|++-..+|.++-|-+.
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs 127 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVS 127 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEE
Confidence 589999999999999999999999864322 2221 1246777777643 2246777788888877652
Q ss_pred c--cc--cccccc--ccccccceeEee-ecCCCEEEEecC-CCc----------EEEEeccCCe----------------
Q 031924 68 Y--FK--DCSDRF--VGLSPNSVDALL-KLDEDRVITGSE-NGL----------ISLVGILPNR---------------- 113 (150)
Q Consensus 68 ~--~~--~~~~~~--~~~~~~~v~~~~-~~~~~~l~~~~~-dg~----------i~~~d~~~~~---------------- 113 (150)
. .+ +....| ....+..|.++. .+..++|+.|+. ... +..|.+-++.
T Consensus 128 ~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~ 207 (282)
T PF15492_consen 128 VGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITAS 207 (282)
T ss_pred cccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccc
Confidence 1 11 222222 221466788777 666677776653 221 3445432211
Q ss_pred ----eeeec--------cCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 114 ----IIQPI--------AEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 114 ----~~~~~--------~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+..+ ...+...|..|..||||++||+...+|.+.
T Consensus 208 ~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~ls 254 (282)
T PF15492_consen 208 SKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLS 254 (282)
T ss_pred ccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEE
Confidence 00000 011122488999999999999999998874
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.5e-06 Score=53.48 Aligned_cols=135 Identities=13% Similarity=0.110 Sum_probs=86.4
Q ss_pred CeeecCcceEEEEcCC--------CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEcccccc
Q 031924 1 MTFAADAMKLLGTSGD--------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~ 71 (150)
++++|+|++.++.... |.+..++.. ++..... ..-...+.++|+|+++.|+ +-+..+.|..|++...+.
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred EEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEecccccc
Confidence 3578888877776543 567777777 5443333 2345679999999998775 566778999998853322
Q ss_pred -c-----ccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEc-CCcc-EEEe
Q 031924 72 -C-----SDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIA-SVLC-FINS 140 (150)
Q Consensus 72 -~-----~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~l~s 140 (150)
. ...+.. .......++ ..+|++.++....+.|.+++.. ++.+..+..... .+++++|. ++.+ +++|
T Consensus 169 ~~~~~~~~~~~~~-~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 169 ELSNRRVFIDFPG-GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp CEEEEEEEEE-SS-SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEE
T ss_pred ceeeeeeEEEcCC-CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEE
Confidence 1 111222 112244555 7788888888889999999987 887777755434 48999994 5544 4444
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-07 Score=66.33 Aligned_cols=138 Identities=10% Similarity=0.145 Sum_probs=96.7
Q ss_pred CcceEEEEcCCCeEEEEEcCCC-------eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc-
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~- 77 (150)
+.+.+++++.|+++++|.++.. .+..+.+.|..++.++.|-.+-+++++ .||-+.+||.- .++....+.
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPF-igr~Laq~~d 822 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPF-IGRLLAQMED 822 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeeccc-ccchhHhhhc
Confidence 4567889999999999998752 256778899999999999998887765 57889999963 344443221
Q ss_pred cc---cccceeEeeecCCCEEEEe-cCCCcEEEEeccCCeeeeecc-----CCCCcceeEEEEcCCccEEEeccccccc
Q 031924 78 GL---SPNSVDALLKLDEDRVITG-SENGLISLVGILPNRIIQPIA-----EHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 78 ~~---~~~~v~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
.. ....|.|+-+.+...++++ +...+|+++|.+.++-...++ .... .++++++.+.|+.+|.+=.+|.+
T Consensus 823 apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna-~~R~iaVa~~GN~lAa~LSnGci 900 (1034)
T KOG4190|consen 823 APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNA-LTRAIAVADKGNKLAAALSNGCI 900 (1034)
T ss_pred CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCch-heeEEEeccCcchhhHHhcCCcE
Confidence 10 1223444445455666666 668899999999876433332 2223 48899999999999887666544
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.2e-08 Score=63.19 Aligned_cols=68 Identities=6% Similarity=0.234 Sum_probs=58.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe-eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 68 (150)
+.|.|....++++..|..+.+||+-.++ ....+.+|...|..+...+--+.+++++.||.|.+|+++.
T Consensus 203 l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 203 LKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 3688888999999999999999997654 3466788999999998888888999999999999999853
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.4e-07 Score=64.66 Aligned_cols=133 Identities=14% Similarity=0.118 Sum_probs=96.6
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC------------CCEEEeecCCCeEEEEEcccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN------------GRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~l~~~~~d~~i~i~~~~~~ 69 (150)
.|+|.| +|+-|+.. .|.+.|..+-+.+..++.|...|+.+.|.|. .-.+++++..|.|.+||+. .
T Consensus 22 Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~-~ 98 (1062)
T KOG1912|consen 22 DWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV-L 98 (1062)
T ss_pred ccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh-h
Confidence 466665 67777555 7899999998889999999999999999864 1246788889999999985 3
Q ss_pred cccccccccccccceeEee----ecCC-CEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC-CccEEE
Q 031924 70 KDCSDRFVGLSPNSVDALL----KLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS-VLCFIN 139 (150)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~~----~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 139 (150)
......+.. +..++..++ ..+. ..+++-.....+.+|+..+|+.+.+...... ...++.++| |.+.+.
T Consensus 99 ~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 99 ASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-ILSCFRVDPFDSRHFC 172 (1062)
T ss_pred hhhhhhhcC-CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc-ceeeeeeCCCCcceEE
Confidence 344455555 566666554 2233 4667777788999999999998887765545 467788777 444433
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-06 Score=56.14 Aligned_cols=139 Identities=12% Similarity=0.098 Sum_probs=89.2
Q ss_pred CeeecCcceEEEEcC---CCeEEEEEcCC--Ceee--eeeccCCCcEEEEEEEeCCCEEEeecCC-CeEEEEEccccccc
Q 031924 1 MTFAADAMKLLGTSG---DGTLSVCNLRK--NTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYFKDC 72 (150)
Q Consensus 1 i~~~~~~~~l~~~~~---d~~i~i~d~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~i~~~~~~~~~ 72 (150)
|+|+|+.+.|+++.. +|.|..|.+.. |+.. ........+..-++++++|++++++.+. |.|.++-++..+..
T Consensus 45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l 124 (346)
T COG2706 45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL 124 (346)
T ss_pred EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc
Confidence 578999998888753 57788777764 5432 2222223344889999999999988754 89999988654432
Q ss_pred c---cccc----cccccc----eeEee-ecCCCEEEEecC-CCcEEEEeccCCeeeeec--cCCCCcceeEEEEcCCccE
Q 031924 73 S---DRFV----GLSPNS----VDALL-KLDEDRVITGSE-NGLISLVGILPNRIIQPI--AEHSEYPIESLGIASVLCF 137 (150)
Q Consensus 73 ~---~~~~----~~~~~~----v~~~~-~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~ 137 (150)
. +.+. +.|+.. +.... .|+++++++... --.|.+|++..++....- ...++...+.|.|+|++++
T Consensus 125 ~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~ 204 (346)
T COG2706 125 QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKY 204 (346)
T ss_pred ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcE
Confidence 2 2221 102111 33333 788988888764 347899999876532221 1223446889999999987
Q ss_pred EE
Q 031924 138 IN 139 (150)
Q Consensus 138 l~ 139 (150)
.-
T Consensus 205 aY 206 (346)
T COG2706 205 AY 206 (346)
T ss_pred EE
Confidence 54
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.2e-07 Score=59.45 Aligned_cols=142 Identities=13% Similarity=0.190 Sum_probs=95.8
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCee---eeeeccCCCcEEEEEEEeCCCEEEeecCCCeE---EEEEcccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV---QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTV---LLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i---~i~~~~~~~~~~~~ 75 (150)
..+|++++++++..++...++++..... ......-...-+++.|..+......+..-|.+ .+|.... .....
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~~~~~ 146 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--GRCEP 146 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc--cCcch
Confidence 3577899999998888888888766432 11111222334566666666665555544444 4444321 23334
Q ss_pred cccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec-cCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+.| |-..++.+. ++|+++++++..|..||+-.......+..+ -+|..+ |..++.-++- .|++||.+..+.
T Consensus 147 ~lG-hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eF-VS~isl~~~~-~LlS~sGD~tlr 218 (390)
T KOG3914|consen 147 ILG-HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEF-VSTISLTDNY-LLLSGSGDKTLR 218 (390)
T ss_pred hhh-hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhh-eeeeeeccCc-eeeecCCCCcEE
Confidence 457 888888887 999999999999999999877554455544 368888 9999986654 588888887764
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-07 Score=61.57 Aligned_cols=145 Identities=13% Similarity=0.117 Sum_probs=94.9
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCe---eeeeeccCC-----CcEEEEEEEeC-CCEEEeecCCCeEEEEEccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSE-----EELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDC 72 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~ 72 (150)
.++.|...++++ .|-.|.+|+++--. .+..++.+. .-|++..|+|. -+.|+-.+..|+|++.|++...-+
T Consensus 171 S~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLC 249 (433)
T KOG1354|consen 171 SVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALC 249 (433)
T ss_pred eecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhh
Confidence 456677777777 88899999987532 123334442 35788999997 456677788999999999743211
Q ss_pred c---cccccc-----------cccceeEee-ecCCCEEEEecCCCcEEEEec-cCCeeeeeccCCCC-------------
Q 031924 73 S---DRFVGL-----------SPNSVDALL-KLDEDRVITGSENGLISLVGI-LPNRIIQPIAEHSE------------- 123 (150)
Q Consensus 73 ~---~~~~~~-----------~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~-~~~~~~~~~~~~~~------------- 123 (150)
. +.|... --..|..+. ++.|+++++-.. -+|++||+ ...+++.+++.|..
T Consensus 250 d~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 250 DAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred cchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 1 111110 112333444 678899987543 58999998 45566666655542
Q ss_pred -cceeEEEEcCCccEEEecccccccc
Q 031924 124 -YPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 124 -~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+.-..++|+-++.+++||+.+..+.
T Consensus 329 IfdKFec~~sg~~~~v~TGsy~n~fr 354 (433)
T KOG1354|consen 329 IFDKFECSWSGNDSYVMTGSYNNVFR 354 (433)
T ss_pred hhheeEEEEcCCcceEecccccceEE
Confidence 1234578999999999999876654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=64.97 Aligned_cols=147 Identities=10% Similarity=0.058 Sum_probs=105.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeee-ccCCCcEEEEEEEeC--CCEEEeecCCCeEEEEEcccccccc--cc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-EFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCS--DR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~~~--~~ 75 (150)
+.|+..|..+++++.|..+.+||...++....+ .+|...|....|.|. .+.+++.+.||.+++=.+...+.+. ..
T Consensus 148 V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~r 227 (559)
T KOG1334|consen 148 VHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKR 227 (559)
T ss_pred eeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceeccee
Confidence 457788999999999999999999988765444 477777777788885 5678999999999987665444333 33
Q ss_pred cccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeec---cCCCC--cceeEEEEcCCcc-EEEeccccccc
Q 031924 76 FVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPI---AEHSE--YPIESLGIASVLC-FINSGFLSLNV 147 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~--~~i~~~~~~~~~~-~l~s~~~~~~v 147 (150)
+.. |.+++..+. -| ....|.+++.|+.+.-+|++...+-..+ ..++. .....++.+|... .+|+|+.+-.+
T Consensus 228 l~~-h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~ 306 (559)
T KOG1334|consen 228 LAP-HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFA 306 (559)
T ss_pred ccc-ccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhh
Confidence 344 888888777 33 5568999999999999999865432222 12222 1366788888655 78888876554
Q ss_pred c
Q 031924 148 N 148 (150)
Q Consensus 148 ~ 148 (150)
.
T Consensus 307 R 307 (559)
T KOG1334|consen 307 R 307 (559)
T ss_pred h
Confidence 3
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.3e-07 Score=62.12 Aligned_cols=109 Identities=12% Similarity=0.183 Sum_probs=79.7
Q ss_pred CeeecCcceEEEE--cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec---CCCeEEEEEcccccccccc
Q 031924 1 MTFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~~~~~~~~~~~~ 75 (150)
+.|+|+++.++++ -.-.++.|||++.. ++.. -.+++-+++-|+|.|+.++.++ ..|.+-+||+.. .+++.+
T Consensus 276 v~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~ 351 (566)
T KOG2315|consen 276 VTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAK 351 (566)
T ss_pred EEECCCCCEEEEEEecccceEEEEcCCCC-EeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccc
Confidence 4699999877664 35678999998743 4433 3467778999999999987765 348999999964 466666
Q ss_pred cccccccceeEeeecCCCEEEEecC------CCcEEEEeccCCeeee
Q 031924 76 FVGLSPNSVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQ 116 (150)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~ 116 (150)
+.. .+...+-++|+|+++++++. |+.+++|+. +|..+.
T Consensus 352 ~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~ 395 (566)
T KOG2315|consen 352 FKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLH 395 (566)
T ss_pred ccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceee
Confidence 664 44455666999999998873 677889998 444433
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9e-06 Score=53.81 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=91.2
Q ss_pred CeeecCcceEEEEc-CCCeEEEEEcCC-Ceee--eeeccCCCc----------EEEEEEEeCCCEEEeecCC-CeEEEEE
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVCNLRK-NTVQ--TRSEFSEEE----------LTSVVLMKNGRKVVCGSQS-GTVLLYS 65 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~d~~~-~~~~--~~~~~~~~~----------v~~~~~~~~~~~l~~~~~d-~~i~i~~ 65 (150)
+++++++++++++. ..|.|.++.++. |... .....|.+. +....+.|+++++++.+.. -.|.+|+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 46788999999987 578999999866 4321 112223333 8889999999999887643 4788999
Q ss_pred ccccccccc----ccccccccceeEeeecCCCEEEEecC-CCcEEEEeccCC--e--eeeeccCC-----CCcceeEEEE
Q 031924 66 WGYFKDCSD----RFVGLSPNSVDALLKLDEDRVITGSE-NGLISLVGILPN--R--IIQPIAEH-----SEYPIESLGI 131 (150)
Q Consensus 66 ~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~l~~~~~-dg~i~~~d~~~~--~--~~~~~~~~-----~~~~i~~~~~ 131 (150)
+. .++... .++. ..++..-+.+|++++....++ +++|.+|..... + .++.+..- .......+.+
T Consensus 174 ~~-dg~L~~~~~~~v~~-G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 174 LD-DGKLTPADPAEVKP-GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred cc-cCccccccccccCC-CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 86 333221 1222 223333344889988776664 899999988652 2 33333211 1123678899
Q ss_pred cCCccEEEeccc
Q 031924 132 ASVLCFINSGFL 143 (150)
Q Consensus 132 ~~~~~~l~s~~~ 143 (150)
+|||++|..+..
T Consensus 252 s~dGrFLYasNR 263 (346)
T COG2706 252 SPDGRFLYASNR 263 (346)
T ss_pred CCCCCEEEEecC
Confidence 999999877543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-06 Score=65.99 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=75.3
Q ss_pred CeeecCcceEE-EEcCCCeEEEEEcCCCeeeeeec------------c---------CCCcEEEEEEEeCCCEEEeecCC
Q 031924 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSE------------F---------SEEELTSVVLMKNGRKVVCGSQS 58 (150)
Q Consensus 1 i~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~------------~---------~~~~v~~~~~~~~~~~l~~~~~d 58 (150)
|+++|+++.|+ +-..++.|++||+.++....... + .-....+++++++|+.+++-..+
T Consensus 745 IavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N 824 (1057)
T PLN02919 745 ISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN 824 (1057)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC
Confidence 46889988555 44578999999998764321110 0 01124688999999988888899
Q ss_pred CeEEEEEcccccccccccccc-------------cccceeEee-ecCCCEEEEecCCCcEEEEeccCCee
Q 031924 59 GTVLLYSWGYFKDCSDRFVGL-------------SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRI 114 (150)
Q Consensus 59 ~~i~i~~~~~~~~~~~~~~~~-------------~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~ 114 (150)
+.|++||... +... ++.+. .-.....+. .++|+++++-+.++.|++||+.+++.
T Consensus 825 ~rIrviD~~t-g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 825 HKIKKLDPAT-KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CEEEEEECCC-CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 9999999852 2222 22110 111233445 77899999989999999999987654
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6e-08 Score=61.42 Aligned_cols=93 Identities=14% Similarity=0.111 Sum_probs=65.7
Q ss_pred eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCC-CEEEeecCCCeEEEEEcccccccccccccccccceeEee-e-cCCCE
Q 031924 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-K-LDEDR 94 (150)
Q Consensus 18 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~-~~~~~ 94 (150)
..+.|+++..+...........|++++-+|.. ..+++|+.||.+.+||++........++. |+..+.-+. + .++..
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a-hk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA-HKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH-hhhhhhheeccCCCchh
Confidence 34445554433222222223458999999874 45678899999999999866555666677 888888665 3 47789
Q ss_pred EEEecCCCcEEEEeccC
Q 031924 95 VITGSENGLISLVGILP 111 (150)
Q Consensus 95 l~~~~~dg~i~~~d~~~ 111 (150)
|+++++||.+.-||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999863
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.8e-06 Score=60.02 Aligned_cols=123 Identities=13% Similarity=0.016 Sum_probs=78.3
Q ss_pred CCeEEEEEcCC----C-eeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEcccccc-----------ccccccc
Q 031924 16 DGTLSVCNLRK----N-TVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKD-----------CSDRFVG 78 (150)
Q Consensus 16 d~~i~i~d~~~----~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~-----------~~~~~~~ 78 (150)
+++|.+.|..+ + +.+..+. -......++++|||+++++++ .+.++.++|+..... ...+..-
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 46788888877 2 3344333 345668999999999986654 689999999864322 1112221
Q ss_pred ccccceeEeeecCCCEEEEecCCCcEEEEeccC----------CeeeeeccCCCCcceeEEE------EcCCccEEEecc
Q 031924 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILP----------NRIIQPIAEHSEYPIESLG------IASVLCFINSGF 142 (150)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~----------~~~~~~~~~~~~~~i~~~~------~~~~~~~l~s~~ 142 (150)
...+.......+|+...+-..|..|-.|++.. ...+..+.-|-. +-.+. -.|||++|++..
T Consensus 374 -GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~--pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 374 -GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ--PGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred -CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCc--cceeeecCCCcCCCCCCEEEEcc
Confidence 23344444466777888888899999999875 234555544322 22222 368999988754
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.2e-07 Score=57.12 Aligned_cols=127 Identities=24% Similarity=0.342 Sum_probs=88.2
Q ss_pred EEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEeeec-
Q 031924 12 GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKL- 90 (150)
Q Consensus 12 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~- 90 (150)
..+.++.|+-+++...+...+.+...... .....-+..+++|+.+|.+.+|.+...+.....+.. ....+.+..+.
T Consensus 35 ~~sa~~~v~~~~~~k~k~s~rse~~~~e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e~i~~~Ip~~ 111 (238)
T KOG2444|consen 35 ATSADGLVRERKVRKHKESCRSERFIDEG--QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-GEESIDLGIPNG 111 (238)
T ss_pred cccCCcccccchhhhhhhhhhhhhhhhcc--eeecccCceEEeecccceEEEecCCccchHHHhhhc-ccccceeccccc
Confidence 34566677766665543222211111111 122234677999999999999998766666666665 56667666633
Q ss_pred -CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 91 -DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 91 -~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
++.+..+++.||.||.|++...+.+.....|...++.....+..+++++..
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a 163 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIA 163 (238)
T ss_pred cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEee
Confidence 445889999999999999999998888888874578888888888888877
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-06 Score=58.18 Aligned_cols=134 Identities=7% Similarity=-0.016 Sum_probs=83.6
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeE
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~ 86 (150)
+..++.++.++.+..||.++++.+...... ..... ...+..++.++.+|.+..+|.. .++..-+... .......
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p--~~~~~~vyv~~~~G~l~~~d~~-tG~~~W~~~~-~~~~~~s 314 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGP--AVDDNRLYVTDADGVVVALDRR-SGSELWKNDE-LKYRQLT 314 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCc--eEeCCEEEEECCCCeEEEEECC-CCcEEEcccc-ccCCccc
Confidence 456777778999999999999877655421 11122 2346778888899999999985 3444333311 1111111
Q ss_pred eeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 87 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.-...+..+++++.+|.++++|..+++.+..+..+...-.....+. +++ |..++.++.|.
T Consensus 315 sp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~~-l~v~~~dG~l~ 374 (377)
T TIGR03300 315 APAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GDG-LLVQTRDGDLY 374 (377)
T ss_pred cCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CCE-EEEEeCCceEE
Confidence 1122467888999999999999999998888765543112222333 333 55666666553
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-07 Score=66.80 Aligned_cols=135 Identities=11% Similarity=0.092 Sum_probs=95.9
Q ss_pred CeeecCc-ceEEEEcCCCeEEEEEcCCCe-eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~-~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
|.|+|.. ..+++++.|..+..||+++.. ++.....-...-..++|+.....+.+.+....+++||.+..+.....+++
T Consensus 120 ~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~ 199 (1081)
T KOG0309|consen 120 INFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG 199 (1081)
T ss_pred cccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc
Confidence 3466643 478889999999999998854 34444444556678999876666666778889999999877778888888
Q ss_pred ccccceeEee--ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc
Q 031924 79 LSPNSVDALL--KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC 136 (150)
Q Consensus 79 ~~~~~v~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (150)
|...+..+. ......+++++.|++|++||-..............+||..-++-|=|.
T Consensus 200 -~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 200 -HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred -cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence 877777765 334567889999999999997543222222222345788888887554
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.1e-07 Score=64.06 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=54.0
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~ 67 (150)
+++|+...++.|+.||.|.+||...+... .....-..+.++|+|+|..+++|+..|.+.+||+.
T Consensus 266 a~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 266 ARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 67899999999999999999998776322 22333457899999999999999999999999985
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.4e-07 Score=58.63 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=75.6
Q ss_pred EEcCCCeEEEEEcCC--CeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-
Q 031924 12 GTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL- 88 (150)
Q Consensus 12 ~~~~d~~i~i~d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~- 88 (150)
.|...|.+.+..+.. -..+.++.+|.+.+.+++|.+..+.+++|..|..+.+||+...........+ |...+..+.
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g-h~~kV~~l~~ 248 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG-HNDKVQALSY 248 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc-chhhhhhhhh
Confidence 344445555444333 2356778899999999999999999999999999999999644344455567 888888777
Q ss_pred ecCCCEEEEecCCCcEEEEeccC
Q 031924 89 KLDEDRVITGSENGLISLVGILP 111 (150)
Q Consensus 89 ~~~~~~l~~~~~dg~i~~~d~~~ 111 (150)
..-.+.+++++.||.|.+|++..
T Consensus 249 ~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhheeeeeccCCCeEEEEeccc
Confidence 45567889999999999999864
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.58 E-value=8e-06 Score=56.93 Aligned_cols=127 Identities=13% Similarity=0.118 Sum_probs=74.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEE-cccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS-WGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~-~~~~~~~~~~~~~~ 79 (150)
|.++|+++.++++ ++|...+|.....+... .+.-....|.++++ +++-..+++|.++. +. ......+..
T Consensus 38 ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~--~~~~k~i~~- 107 (443)
T PF04053_consen 38 LSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFK--NEVVKSIKL- 107 (443)
T ss_dssp EEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTE--E-TT------
T ss_pred EEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCc--cccceEEcC-
Confidence 4689999999985 78888888854433222 23345678988555 66666688999963 32 233334433
Q ss_pred cccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
+..+..+.. |.+|...+.+ .|.+||+.+++.++.+... +|..+.|+++|+++|-.+.+
T Consensus 108 -~~~~~~If~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 108 -PFSVEKIFG--GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp -SS-EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S-
T ss_pred -CcccceEEc--CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC
Confidence 233455544 7777776544 8999999999999998533 48999999999998876543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.4e-06 Score=61.05 Aligned_cols=134 Identities=13% Similarity=0.175 Sum_probs=88.0
Q ss_pred cceEEEE-cCCCeEEEEEcCCCeeeeeeccCCCc-EEEEEEEe-----CCCEEEeecCCCeEEEEEcccccc-ccc----
Q 031924 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEE-LTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYFKD-CSD---- 74 (150)
Q Consensus 7 ~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~d~~i~i~~~~~~~~-~~~---- 74 (150)
.+.|+.. ...+.|+-.|++.|+.+.....+... +..++-.. .....+.|-.+..+..||.|..+. ++.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3344443 35678999999999999888776543 44443221 123456677778899999986542 221
Q ss_pred ccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 75 RFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 75 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
.+. ......|++.....+|+.|+.+|.||+||-...+....+++-.. ||..|..+.||++++..+-
T Consensus 573 ~Y~--~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 573 QYS--SKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCK 638 (794)
T ss_pred ccc--cCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeec
Confidence 121 23445666655667899999999999999543333334444444 8999999999998665443
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.4e-05 Score=51.67 Aligned_cols=111 Identities=9% Similarity=-0.020 Sum_probs=77.0
Q ss_pred CcceEEEEcCC-----CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC----------CCeEEEEEccccc
Q 031924 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ----------SGTVLLYSWGYFK 70 (150)
Q Consensus 6 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~i~~~~~~~ 70 (150)
+.+.++..... ++|.+.|..+++.+..+..-..+ ..+ ++||++.++++.. +..|.+||..+ .
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~ 87 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-H 87 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-C
Confidence 44455554433 89999999999888776643333 234 9999999876654 78999999864 3
Q ss_pred cccccccccccc--------ceeEeeecCCCEEEEec-C-CCcEEEEeccCCeeeeeccC
Q 031924 71 DCSDRFVGLSPN--------SVDALLKLDEDRVITGS-E-NGLISLVGILPNRIIQPIAE 120 (150)
Q Consensus 71 ~~~~~~~~~~~~--------~v~~~~~~~~~~l~~~~-~-dg~i~~~d~~~~~~~~~~~~ 120 (150)
+...++.. .+. +.....+++|++++... . +..|.++|+.+++.+..+.-
T Consensus 88 ~~~~~i~~-p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 88 LPIADIEL-PEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred cEEeEEcc-CCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 55555542 122 11233489999888766 4 68999999999998887753
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.4e-06 Score=59.60 Aligned_cols=134 Identities=10% Similarity=0.064 Sum_probs=92.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC-----------CCeEEEEEcccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-----------SGTVLLYSWGYF 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~i~~~~~~ 69 (150)
+.|||-|.+|++-..-| |.+|--++...++++. | ..|.-+.|||+.++|++-+. ...+.|||++ .
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~-t 291 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA-T 291 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc-c
Confidence 47999999999997764 8899766655554443 3 35788999999999998652 2579999996 4
Q ss_pred cccccccccc-cccceeEee--ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 70 KDCSDRFVGL-SPNSVDALL--KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 70 ~~~~~~~~~~-~~~~v~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
|.....|... .+...-.+. +.++++++.-.. ..|.+|+..+-.++..-..... .|....|+|.+++||-
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~-gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKIS-GIRDFSWSPTSNLLAY 363 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCc-cccCcccCCCcceEEE
Confidence 5666666531 112222333 778888876655 5788998766444333222223 5888899999998884
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6e-06 Score=55.52 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=60.3
Q ss_pred CeeecCcc-eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccccccccc
Q 031924 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
|+|+|..+ ++..++.+++|+|.|+++.........+ ..+.+++|..+ ..++.+|..+|.|.+||++........+
T Consensus 199 lafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~ 275 (463)
T KOG1645|consen 199 LAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMEL 275 (463)
T ss_pred hccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhh
Confidence 57899776 7888899999999999998776666655 78899999987 5567889999999999998655444444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-05 Score=58.59 Aligned_cols=134 Identities=12% Similarity=0.156 Sum_probs=91.6
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC-----CCEEEeecCCCeEEEEEcccccccccc-cccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-----GRKVVCGSQSGTVLLYSWGYFKDCSDR-FVGL 79 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~i~~~~~~~~~~~~-~~~~ 79 (150)
+|+++++|+.||++.|..+.+.+...... ...++.+++++|+ .+.+++|+..| +.++.-+-.+..... ...
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~- 158 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE- 158 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec-
Confidence 68999999999999999988876555443 3467899999998 56799999998 777764212221111 222
Q ss_pred cccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCc-----ceeEEEEcCCccEEEecccc
Q 031924 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-----PIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~s~~~~ 144 (150)
..++|.++. ..|++++-++.+| |++||..+++.+..++..... -...+.|.++.+++..=+.+
T Consensus 159 ~eG~I~~i~-W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~ 226 (846)
T KOG2066|consen 159 GEGPIHSIK-WRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDS 226 (846)
T ss_pred CccceEEEE-ecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCe
Confidence 456677664 4578888887666 699999888877766433221 14457787777665543333
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-06 Score=61.58 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=59.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEE-EEEEEeCCCEEEeecCCCeEEEEEcccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELT-SVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
+.|+|.-.+||.+..+|++-+..+. .+.+..+.-+...++ +++|.|||+.+++|-.||+|++.|......
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 4689999999999999999999988 556777775666666 999999999999999999999999975433
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.4e-06 Score=56.42 Aligned_cols=107 Identities=17% Similarity=0.269 Sum_probs=73.1
Q ss_pred eeecC-cceEEEEcCCCeEEEEEcCCCeee----eeec------------cCCCcEEEEEEEeCCCEEEeecCCCeEEEE
Q 031924 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQ----TRSE------------FSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64 (150)
Q Consensus 2 ~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~----~~~~------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 64 (150)
.|+|. -+.++-++..|+|++.|++....- +.++ .--..|..+.|+++|+++++-+. -+|++|
T Consensus 220 EFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~w 298 (433)
T KOG1354|consen 220 EFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLW 298 (433)
T ss_pred ccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEE
Confidence 46774 456677778999999999853211 1111 11236889999999999998765 489999
Q ss_pred Ecccccccccccccccc------------cc----eeEeeecCCCEEEEecCCCcEEEEecc
Q 031924 65 SWGYFKDCSDRFVGLSP------------NS----VDALLKLDEDRVITGSENGLISLVGIL 110 (150)
Q Consensus 65 ~~~~~~~~~~~~~~~~~------------~~----v~~~~~~~~~~l~~~~~dg~i~~~d~~ 110 (150)
|+....+.+.+++. |. +. ..|.++-++..+++|+....+++++..
T Consensus 299 D~nme~~pv~t~~v-h~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 299 DLNMEAKPVETYPV-HEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred eccccCCcceEEee-hHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 98544455555443 32 12 223446677799999999999999954
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.39 E-value=8e-06 Score=56.70 Aligned_cols=137 Identities=12% Similarity=0.063 Sum_probs=82.6
Q ss_pred eeecCcceEEEE---cCC-CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEccccccccccc
Q 031924 2 TFAADAMKLLGT---SGD-GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 2 ~~~~~~~~l~~~---~~d-~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
.|+|+++.++.. ... ..+.++++++++....+. ..+.-...+|+|||++++ +...||...||-+...++...++
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L 277 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL 277 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceec
Confidence 478887765544 223 468899999886544433 333445668999998875 55677766666443333444444
Q ss_pred ccccccceeE--eeecCCCEEEEecC-CC--cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 77 VGLSPNSVDA--LLKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 77 ~~~~~~~v~~--~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
.. ...+.. ..+|+|+.++..+. .| .|.++++..+.. +.+...... -..-.|+|||++++..+.
T Consensus 278 t~--~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~-~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 278 TN--GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG-NSNPVWSPDGDKIVFESS 345 (425)
T ss_pred cc--CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC-CcCccCCCCCCEEEEEec
Confidence 32 223332 23889998876654 44 455557665544 333333331 226789999999987763
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.5e-05 Score=42.32 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=66.7
Q ss_pred EEEEEEEe-C---CCEEEeecCCCeEEEEEcccccccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeee
Q 031924 40 LTSVVLMK-N---GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115 (150)
Q Consensus 40 v~~~~~~~-~---~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 115 (150)
|+++++.. + .+.|++|+.|..|++|+- ...+..+.. .+.+..+....+..++.+..+|+|-+|+-. .+ +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~---~e~~~Ei~e--~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~-~R-l 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG---DEIVAEITE--TDKVTSLCSLGGGRFAYALANGTVGVYDRS-QR-L 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC---CcEEEEEec--ccceEEEEEcCCCEEEEEecCCEEEEEeCc-ce-e
Confidence 56666654 2 367999999999999984 366666654 567888886667889999999999999862 22 3
Q ss_pred eeccCCCCcceeEEEE-cC--Cc-cEEEeccccccc
Q 031924 116 QPIAEHSEYPIESLGI-AS--VL-CFINSGFLSLNV 147 (150)
Q Consensus 116 ~~~~~~~~~~i~~~~~-~~--~~-~~l~s~~~~~~v 147 (150)
..++.... +.++++ .. || .-|++|-.+|.|
T Consensus 75 WRiKSK~~--~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 75 WRIKSKNQ--VTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred eeeccCCC--eEEEEEEcCCCCCceEEEEEecCCeE
Confidence 33322222 444443 33 33 357788777765
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-05 Score=56.24 Aligned_cols=124 Identities=11% Similarity=0.089 Sum_probs=79.1
Q ss_pred EEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec---CCCeEEEEEccccc---ccccccccccccceeEee-ecC
Q 031924 19 LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFK---DCSDRFVGLSPNSVDALL-KLD 91 (150)
Q Consensus 19 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~~~~~~~---~~~~~~~~~~~~~v~~~~-~~~ 91 (150)
+.|+.++..........-.+.+...+|-|.|..+++-+ ...++++|-++... +.+.++. ....+.+. +|.
T Consensus 427 ~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d---k~~~N~vfwsPk 503 (698)
T KOG2314|consen 427 LEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD---KKFANTVFWSPK 503 (698)
T ss_pred EEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc---ccccceEEEcCC
Confidence 44555544332222233456788999999999887654 33688999876332 2223332 22344455 899
Q ss_pred CCEEEEec---CCCcEEEEeccCCeeee-eccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 92 EDRVITGS---ENGLISLVGILPNRIIQ-PIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 92 ~~~l~~~~---~dg~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
|+.++.+. ..|.+.++|+....+.. ....|. ..+.+.|+|.|+|+++++..+..
T Consensus 504 G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~--~at~veWDPtGRYvvT~ss~wrh 561 (698)
T KOG2314|consen 504 GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF--AATEVEWDPTGRYVVTSSSSWRH 561 (698)
T ss_pred CcEEEEEEecccccceEEEecchhhhhhccCcccc--ccccceECCCCCEEEEeeehhhh
Confidence 99887764 46889999986423221 222443 37889999999999999987743
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.6e-06 Score=60.17 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=82.8
Q ss_pred CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc-------c-------ccccccccccccceeEee-ecCCCEEEEecC
Q 031924 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-------K-------DCSDRFVGLSPNSVDALL-KLDEDRVITGSE 100 (150)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-------~-------~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~ 100 (150)
....+.|+.|+....++++|+.||.+++..+.+. + ..-+++.| |...|..+. +.+.+.+-+...
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccccccccCC
Confidence 4557899999999999999999999999876432 0 12346678 888888777 556678888888
Q ss_pred CCcEEEEeccCCeeeeecc--CCCCcceeEEEEcCCccEEEeccccccc
Q 031924 101 NGLISLVGILPNRIIQPIA--EHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 101 dg~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+|-|.+|-+..+.-...+. .... .|.+++|+.||..++..-.+|+|
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKS-vV~SmsWn~dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKS-VVVSMSWNLDGTKICIVYEDGAV 139 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCcc-EEEEEEEcCCCcEEEEEEccCCE
Confidence 9999999998776444432 2223 48999999999987766555554
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.9e-06 Score=67.38 Aligned_cols=74 Identities=16% Similarity=0.304 Sum_probs=59.1
Q ss_pred ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCe
Q 031924 34 EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNR 113 (150)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 113 (150)
..|.+.++++++.|..+.|++|+.+|.+++||++. .+..++++. + . ...++.+|+..|.+++|++..-.
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rq-rql~h~~~~--------~-~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQ-RQLRHTFQA--------L-D-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHH-HHHHHHhhh--------h-h-hhheeeccCcccceEEEEccccc
Confidence 67888999999999999999999999999999973 255555542 1 1 35688999999999999997655
Q ss_pred eeeec
Q 031924 114 IIQPI 118 (150)
Q Consensus 114 ~~~~~ 118 (150)
.+..+
T Consensus 2402 ll~~~ 2406 (2439)
T KOG1064|consen 2402 LLHTF 2406 (2439)
T ss_pred hhhcC
Confidence 55554
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-05 Score=59.13 Aligned_cols=138 Identities=12% Similarity=0.066 Sum_probs=86.3
Q ss_pred eeecCcceEEEEcCCCeEEEE----EcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc--------
Q 031924 2 TFAADAMKLLGTSGDGTLSVC----NLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-------- 69 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-------- 69 (150)
.|-++...++.+..+|.|-+. +..... +...-.-+..|.+++||||+..++..+.++++.+-+- ..
T Consensus 82 ~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l 159 (928)
T PF04762_consen 82 QYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPL 159 (928)
T ss_pred EeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeec
Confidence 355677788888889999988 544432 2222344678999999999999999988888877542 11
Q ss_pred ---------------cccccccccc-----------------------cccceeEee-ecCCCEEEEecC---C---CcE
Q 031924 70 ---------------KDCSDRFVGL-----------------------SPNSVDALL-KLDEDRVITGSE---N---GLI 104 (150)
Q Consensus 70 ---------------~~~~~~~~~~-----------------------~~~~v~~~~-~~~~~~l~~~~~---d---g~i 104 (150)
|+...+|.|. ..+.-..+. ..||.++++.+- . ..+
T Consensus 160 ~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~i 239 (928)
T PF04762_consen 160 DSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVI 239 (928)
T ss_pred CccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEE
Confidence 2222222210 000111233 558888888774 2 478
Q ss_pred EEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 105 SLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 105 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
|+|+-+ |....+-..-.+ --..++|.|.|++||+.-.
T Consensus 240 RVy~Re-G~L~stSE~v~g-Le~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 240 RVYSRE-GELQSTSEPVDG-LEGALSWRPSGNLIASSQR 276 (928)
T ss_pred EEECCC-ceEEeccccCCC-ccCCccCCCCCCEEEEEEE
Confidence 899864 543333322222 2456899999999998653
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.3e-05 Score=59.34 Aligned_cols=131 Identities=13% Similarity=0.065 Sum_probs=85.6
Q ss_pred CeeecCcceEEEEcC---C---CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC---CCeEEEEEcccccc
Q 031924 1 MTFAADAMKLLGTSG---D---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~---d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~~~~~~~~ 71 (150)
|+|..||+++++.+. . ..++||+-+ |......+...+--.+++|-|.|+++++... ...|.+|.- +|-
T Consensus 215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr--NGL 291 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER--NGL 291 (928)
T ss_pred EEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec--CCc
Confidence 468899999998764 3 478999976 6666555555555678999999999988764 345666653 343
Q ss_pred ccccccc---ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe--eeeeccCCCCcceeEEEEcCCc
Q 031924 72 CSDRFVG---LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLGIASVL 135 (150)
Q Consensus 72 ~~~~~~~---~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~ 135 (150)
.-..|.- .....+..+. +.++..|+....|. |.+|...+.. ..+.+.......+..+.|+|..
T Consensus 292 rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~ 360 (928)
T PF04762_consen 292 RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK 360 (928)
T ss_pred EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence 2222321 0345667776 78899998877555 9999887654 3333332222235558888854
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00012 Score=47.11 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=79.9
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccccee-
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD- 85 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~- 85 (150)
..+++.++..+.+..-|..+|+...+-.. ..++.+-+.- -|++++.|+.+|.+++.+.. .+.....+.. .+.|.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~-tGs~~w~f~~--~~~vk~ 97 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVK-TGSQIWNFVI--LETVKV 97 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEec-chhheeeeee--hhhhcc
Confidence 35777888899999999999987754332 3344444433 47889999999999999985 4555555543 23343
Q ss_pred -EeeecCCCEEEEecCCCcEEEEeccCCeeeeecc
Q 031924 86 -ALLKLDEDRVITGSENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 86 -~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 119 (150)
..+.+++.++..++.|+..+..|.++..++...+
T Consensus 98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred ceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 4458899999999999999999999888777654
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.1e-06 Score=37.37 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=32.4
Q ss_pred eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEE
Q 031924 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (150)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~ 65 (150)
+....+..+...+.++.|.+++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34555667788999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.8e-06 Score=60.19 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=87.8
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeE
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~ 86 (150)
+..++.|+-...+..+|+++.+..+...-..+.+.-++ .+++.+.+|...|+|.+-|.+. -+.++++.. |.+.+..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~a-Hs~siSD 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNS-FETIHTFDA-HSGSISD 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCc-Cceeeeeec-cccceee
Confidence 34555666666788889988866554443333444443 4678999999999999999864 378888988 9888876
Q ss_pred eeecCCCEEEEecCC---------CcEEEEeccCCeeeeeccCCCCcceeEEEEcCC-ccEEEeccccc
Q 031924 87 LLKLDEDRVITGSEN---------GLISLVGILPNRIIQPIAEHSEYPIESLGIASV-LCFINSGFLSL 145 (150)
Q Consensus 87 ~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~~~ 145 (150)
+ ...|++|++++.. ..|++||++..+.+..++-+.+ ..-+.|.|. ...++.++.+|
T Consensus 223 f-Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~~~V~S~sG 288 (1118)
T KOG1275|consen 223 F-DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTRLAVTSQSG 288 (1118)
T ss_pred e-eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccceEEEEeccc
Confidence 6 4567888887744 3478999998776666654433 233555553 23344444333
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.4e-05 Score=52.17 Aligned_cols=136 Identities=9% Similarity=0.076 Sum_probs=89.0
Q ss_pred eeecCcceEEEEc-----------CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEe--ecCCCeEEEEEccc
Q 031924 2 TFAADAMKLLGTS-----------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC--GSQSGTVLLYSWGY 68 (150)
Q Consensus 2 ~~~~~~~~l~~~~-----------~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~i~~~~~ 68 (150)
.|++.|++++.-- +...+.+++++...+ .......++|...+|.|.++.|++ |-.+-.+.++|++
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr- 306 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR- 306 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCCceeEEecccccceeecccc-
Confidence 4677777665521 234677787774332 222255789999999999877654 4577899999986
Q ss_pred ccccccccccccccceeEee-ecCCCEEEEecCC---CcEEEEeccCCe-eeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 69 FKDCSDRFVGLSPNSVDALL-KLDEDRVITGSEN---GLISLVGILPNR-IIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~d---g~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+....-++ +..-..+. +|.+++++.++-| |.+-+||..... +...+.+. ..+-+.|+||++++-+...
T Consensus 307 -~Nl~~~~P---e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~---n~s~~~wspd~qF~~~~~t 379 (561)
T COG5354 307 -GNLRFYFP---EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL---NTSYCDWSPDGQFYDTDTT 379 (561)
T ss_pred -cceEEecC---CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC---CceEeeccCCceEEEecCC
Confidence 34444333 23334444 8888988886654 689999986544 33344332 2556789999999888766
Q ss_pred ccc
Q 031924 144 SLN 146 (150)
Q Consensus 144 ~~~ 146 (150)
+-.
T Consensus 380 s~k 382 (561)
T COG5354 380 SEK 382 (561)
T ss_pred Ccc
Confidence 544
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.6e-06 Score=58.51 Aligned_cols=108 Identities=17% Similarity=0.106 Sum_probs=73.5
Q ss_pred cEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEe-eecCCCEEEEecCCCcEEEEeccCCe---e
Q 031924 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---I 114 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~i~~~d~~~~~---~ 114 (150)
.+.--+++..+.+++.|+.-|.+++|+-........+..+ ....+..+ .+....++++|+..|.|.++.+.... .
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccC-ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 3444455667899999999999999995422122222223 22222223 37788899999999999999775432 1
Q ss_pred e--eec-cCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 115 I--QPI-AEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 115 ~--~~~-~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
. ... +.|.. .|++++|++++..+.+|...|.|.
T Consensus 114 ~~~t~~d~~~~~-rVTal~Ws~~~~k~ysGD~~Gkv~ 149 (726)
T KOG3621|consen 114 DYVTPCDKSHKC-RVTALEWSKNGMKLYSGDSQGKVV 149 (726)
T ss_pred eeeccccccCCc-eEEEEEecccccEEeecCCCceEE
Confidence 1 111 23455 599999999999999999988764
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-05 Score=54.76 Aligned_cols=134 Identities=12% Similarity=0.159 Sum_probs=88.4
Q ss_pred CcceEEE-EcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCE-------EEeecCCCeEEEEEcccccc-cc---
Q 031924 6 DAMKLLG-TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRK-------VVCGSQSGTVLLYSWGYFKD-CS--- 73 (150)
Q Consensus 6 ~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~~~~~d~~i~i~~~~~~~~-~~--- 73 (150)
+.+.|+. +.....++-.|++.|+.+.....+.+ |+-+.+.|+.+. -+.|-.|..|.-||++..+. .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 4444444 44566788899999999888776655 666667766321 23455677888899875443 11
Q ss_pred --cccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 74 --DRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 74 --~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.+.. .....|.......++++|+.+|.||+||--..+....+++-.. +|..+..+.+|++|+..+-
T Consensus 423 q~kqy~~--k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 423 QSKQYST--KNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATCK 491 (644)
T ss_pred ecccccc--ccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEecc
Confidence 12222 2334455555566899999999999999733333344545444 7999999999998765443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.7e-05 Score=50.94 Aligned_cols=109 Identities=15% Similarity=0.121 Sum_probs=73.4
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccccee
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 85 (150)
.+..+++++.++.+..+|..+|+.+.............. .++..+++++.++.+..+|.. .++..-+... ...+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~-tG~~~W~~~~--~~~~~ 138 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAE-DGKELWRAKL--SSEVL 138 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECC-CCcEeeeecc--Cceee
Confidence 356788888899999999999988766554332222222 357788889999999999975 4555444332 12222
Q ss_pred EeeecCCCEEEEecCCCcEEEEeccCCeeeeecc
Q 031924 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 119 (150)
+.....+..++.++.++.++.+|.++++.+..+.
T Consensus 139 ~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 139 SPPLVANGLVVVRTNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence 2111235577778889999999999988766553
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.4e-05 Score=56.55 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=85.1
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCc-EEEEEEEeCCCEEEeecCCC-----eEEEEEccccc-----
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-LTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFK----- 70 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~~----- 70 (150)
+|++.+..++.|+.+|.|.+++-. -+.+..++.++.. +..+....+..+|++.+.|+ .+++|+++...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 478888999999999999888743 3344566666655 44444444446777766553 58999986431
Q ss_pred ccc--ccccc----ccccceeEee-ecCCCEEEEecCCCcEEEE--eccCCe-eeeeccCCCCcceeEEEEcCCccE
Q 031924 71 DCS--DRFVG----LSPNSVDALL-KLDEDRVITGSENGLISLV--GILPNR-IIQPIAEHSEYPIESLGIASVLCF 137 (150)
Q Consensus 71 ~~~--~~~~~----~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~--d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ 137 (150)
.+. .++.+ ..+.++.++. +.+-+.+++|-.+|.|..+ |+...+ ....+......||+.+++..+++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 122 11111 0244555666 6677899999999999998 442222 222222222348999999988875
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.3e-05 Score=54.46 Aligned_cols=136 Identities=21% Similarity=0.187 Sum_probs=78.2
Q ss_pred eeecCcceEEEEc-CCCe--EEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEcccccccccccc
Q 031924 2 TFAADAMKLLGTS-GDGT--LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~~-~d~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
+|+|||+.|+.+. .|+. |.++|+..+. ..++....+.-..-.|+|||++++ +.+..|.-.||-....+....++.
T Consensus 244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT 322 (425)
T COG0823 244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT 322 (425)
T ss_pred cCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence 5899999777654 5665 5556666654 333444344334678999999986 445667666665443344444444
Q ss_pred cccc-cceeEeeecCCCEEEEecC-CCc--EEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 78 GLSP-NSVDALLKLDEDRVITGSE-NGL--ISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 78 ~~~~-~~v~~~~~~~~~~l~~~~~-dg~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
. .. ....-..+|+|++++..+. +|. |.+.|+.++..++.+.. .. ......|.++|+.+...
T Consensus 323 ~-~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~-~~-~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 323 F-SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS-TY-LNESPSWAPNGRMIMFS 387 (425)
T ss_pred c-cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc-cc-cCCCCCcCCCCceEEEe
Confidence 2 22 2223334889998887764 344 55566655543444422 12 24455667777665543
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00015 Score=40.57 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=62.0
Q ss_pred ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEe
Q 031924 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~ 87 (150)
+.|++|+.|..|++|+-+ +.+..+. ..+.++++.-... ..|+-+-.+|+|-+|+-. ...-+.+. ...+.++
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~---~RlWRiKS--K~~~~~~ 86 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS---QRLWRIKS--KNQVTSM 86 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc---ceeeeecc--CCCeEEE
Confidence 589999999999999854 3555544 4567778777665 668889999999999852 33444444 3335665
Q ss_pred ee--cCC---CEEEEecCCCcEE
Q 031924 88 LK--LDE---DRVITGSENGLIS 105 (150)
Q Consensus 88 ~~--~~~---~~l~~~~~dg~i~ 105 (150)
.. .++ ..|++|..+|.|-
T Consensus 87 ~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 87 AFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEcCCCCCceEEEEEecCCeEE
Confidence 52 222 3789999999874
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=52.82 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=90.8
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCe---eeeeeccCCC-----cEEEEEEEeC-CCEEEeecCCCeEEEEEccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEE-----ELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDC 72 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~-----~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~ 72 (150)
.|+.|.+.++++ .|-.|.+|+++... .+..+++|.. -+++..|+|. -..+.-.+..|.|++.|++...-+
T Consensus 179 S~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 179 SFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 456666677666 78899999987532 2334445432 4788899996 445666778899999999743211
Q ss_pred c---ccc------------ccccccceeEee-ecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCC------------
Q 031924 73 S---DRF------------VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSE------------ 123 (150)
Q Consensus 73 ~---~~~------------~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~------------ 123 (150)
. ..+ .+ -...|..+. +++|+++++-. --++++||... ..++.+++.|..
T Consensus 258 dn~~klfe~~~D~v~~~ff~e-ivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEE-IVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred cCchhhhhhccCcccchhHHH-HhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence 1 111 11 122344444 66778887654 35899999875 346777654431
Q ss_pred --cceeEEEEcCCccEEEecccccc
Q 031924 124 --YPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 124 --~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
+.-..+.|+-|.+.+.+|+.+.+
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NN 360 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNN 360 (460)
T ss_pred ceeeeEEEEecCCcccccccccccc
Confidence 11335788889999999988765
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00034 Score=47.53 Aligned_cols=112 Identities=7% Similarity=0.028 Sum_probs=77.0
Q ss_pred eec-CcceEEEEcCCCeEEEEEcCCCe-----eeeeecc-------CCCcEEEEEEEeCCCEEEeec----------CCC
Q 031924 3 FAA-DAMKLLGTSGDGTLSVCNLRKNT-----VQTRSEF-------SEEELTSVVLMKNGRKVVCGS----------QSG 59 (150)
Q Consensus 3 ~~~-~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~----------~d~ 59 (150)
|.+ +++++..+.. |.|.+.|+...+ ....+.. ..+...-++++++++++++.. ..+
T Consensus 201 ~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 201 YSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred eEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 344 7888877766 999999965432 2221111 223444599999998888742 225
Q ss_pred eEEEEEcccccccccccccccccceeEee-ecCCC-EEEEec-CCCcEEEEeccCCeeeeec
Q 031924 60 TVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDED-RVITGS-ENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 60 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~-~l~~~~-~dg~i~~~d~~~~~~~~~~ 118 (150)
.|.++|.. ..+.+.++.. ...+..+. +++++ +|++.. .++.|.++|..+++.++.+
T Consensus 280 ~V~ViD~~-t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 280 FLFVVDAK-TGKRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEEECC-CCeEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 79999985 4466666653 23455665 88988 777666 5788999999999988887
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00045 Score=45.74 Aligned_cols=140 Identities=12% Similarity=0.067 Sum_probs=88.6
Q ss_pred Ceeec-CcceEEEEcCCCe-EEEEEcCCCeeeeeeccCCCc--EEEEEEEeCCCEEEeec-----CCCeEEEEEcccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGT-LSVCNLRKNTVQTRSEFSEEE--LTSVVLMKNGRKVVCGS-----QSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~-----~d~~i~i~~~~~~~~ 71 (150)
++.+| ....++.+-.-|+ ..+||..+++....+...++. .=--.|++||++|++.- ..|.|-|||....-+
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 35677 4556666665555 668999999887766654442 22467999999998763 358999999862224
Q ss_pred ccccccccccccee-EeeecCCCEEEEec------------------CCCcEEEEeccCCeeeeecc----CCCCcceeE
Q 031924 72 CSDRFVGLSPNSVD-ALLKLDEDRVITGS------------------ENGLISLVGILPNRIIQPIA----EHSEYPIES 128 (150)
Q Consensus 72 ~~~~~~~~~~~~v~-~~~~~~~~~l~~~~------------------~dg~i~~~d~~~~~~~~~~~----~~~~~~i~~ 128 (150)
.+..+.. +.-.-. .+..++++.|+.+. .+..+...|..+++.+.... .|.- +|..
T Consensus 90 ri~E~~s-~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l-SiRH 167 (305)
T PF07433_consen 90 RIGEFPS-HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL-SIRH 167 (305)
T ss_pred EEeEecC-CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc-ceee
Confidence 5555553 322112 23366775555442 22234456777888776632 2433 6999
Q ss_pred EEEcCCccEEEecc
Q 031924 129 LGIASVLCFINSGF 142 (150)
Q Consensus 129 ~~~~~~~~~l~s~~ 142 (150)
++++++|..++..-
T Consensus 168 La~~~~G~V~~a~Q 181 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQ 181 (305)
T ss_pred EEecCCCcEEEEEe
Confidence 99999998776543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0002 Score=45.78 Aligned_cols=111 Identities=18% Similarity=0.286 Sum_probs=73.6
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc-cccc--cc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF-VGLS--PN 82 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~--~~ 82 (150)
++..+++++.++.+..||..+|+.+.+...... +.... ...+..+++++.++.+..+|.. .++..-+. .. . ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~~~v~v~~~~~~l~~~d~~-tG~~~W~~~~~-~~~~~ 110 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDGGRVYVGTSDGSLYALDAK-TGKVLWSIYLT-SSPPA 110 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEETTEEEEEETTSEEEEEETT-TSCEEEEEEE--SSCTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eecccccccccceeeeEecccC-Ccceeeeeccc-ccccc
Confidence 567777888999999999999998876654222 11112 3345667777788899999964 45555442 22 1 11
Q ss_pred ce-eEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccC
Q 031924 83 SV-DALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (150)
Q Consensus 83 ~v-~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 120 (150)
.. .... ...++.++.+..++.+..+|+++++.+.....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 11 1111 33477888888899999999999998776644
|
... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.7e-06 Score=63.71 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=99.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC-C-eEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-G-TVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~-~i~i~~~~~~~~~~~~~~~ 78 (150)
++|+-+.+.|+.|+-.|.|++|++.+|.......+|...++-+.-+.+|..+.+.+.- . -..+|++...+...+.|.+
T Consensus 1107 ~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1107 IAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE 1186 (1516)
T ss_pred EEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc
Confidence 4688889999999999999999999998888899999999999989898877665533 2 4568998765566666654
Q ss_pred ccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCC---CCcceeEEEEcCCccEEEeccccccc
Q 031924 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH---SEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
...+. + +.....-+.|+......+||++++..+.++-.. ..+.-+.+.|+|+..++.--|.=+.|
T Consensus 1187 --d~~vk-F-sn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvLWDv 1254 (1516)
T KOG1832|consen 1187 --DKAVK-F-SNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVLWDV 1254 (1516)
T ss_pred --cceee-h-hhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCceeeee
Confidence 11121 1 111222233444467889999998877663211 11234677899988887765544443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3e-05 Score=53.69 Aligned_cols=131 Identities=14% Similarity=0.161 Sum_probs=87.2
Q ss_pred CeeecCcceEEEEc--CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC---CeEEEEEcccccccccc
Q 031924 1 MTFAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS---GTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~ 75 (150)
.+|.|.++.+++.+ .+-.+.++|++.. ... ...+..-+.+.|+|.+++++.++-| |.+-+||....-.+...
T Consensus 280 f~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~--~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~ 356 (561)
T COG5354 280 FTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF--YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGA 356 (561)
T ss_pred eeecccCCceeEEecccccceeecccccc-eEE--ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEE
Confidence 36899888777655 5788999999866 332 3344555788899999999887654 78999997533344445
Q ss_pred cccccccceeEeeecCCCEEEEec------CCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 76 FVGLSPNSVDALLKLDEDRVITGS------ENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
+.+ .+.-.|-++|+++++.+.. .|..+.+||+...... ..+.+.|.|.|++..+.+...
T Consensus 357 ~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 357 FNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred eec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence 554 3333444588888877654 4677899998543221 244567777777666555443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00065 Score=44.99 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=40.3
Q ss_pred eeecCcceEEEEc-----CCCeEEEEEcC-CCeeeeeeccCCCcEEEEEEEeCCCEEEee
Q 031924 2 TFAADAMKLLGTS-----GDGTLSVCNLR-KNTVQTRSEFSEEELTSVVLMKNGRKVVCG 55 (150)
Q Consensus 2 ~~~~~~~~l~~~~-----~d~~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 55 (150)
.|++||++|++.- ..|.|-|||.. +.+.+..+..+--....+.+.|||+.|+++
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 5899999999863 45899999998 445566666555555677788888776665
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=54.05 Aligned_cols=91 Identities=7% Similarity=0.050 Sum_probs=65.4
Q ss_pred EEEEEcCCCeeeeeeccCCCcEEEEEEEeCCC-EEEeecCCCeEEEEEcccccccccccccccccceeEee-ec-CCCEE
Q 031924 19 LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KL-DEDRV 95 (150)
Q Consensus 19 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~l 95 (150)
+++++..+.+....+..+...|.+++|+|..+ .+..++.+.+|++.|+++ ......+.. + ..+.+++ .. +.+++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a-~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIA-Y-NQIWSCCWDLDERHVI 251 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheec-c-CCceeeeeccCCccee
Confidence 44444444444445556667899999999866 678899999999999974 356666665 5 4444444 33 45678
Q ss_pred EEecCCCcEEEEeccCC
Q 031924 96 ITGSENGLISLVGILPN 112 (150)
Q Consensus 96 ~~~~~dg~i~~~d~~~~ 112 (150)
..|-.+|.|.+||++..
T Consensus 252 YaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQP 268 (463)
T ss_pred EEeccCceEEEEEccCC
Confidence 88889999999999753
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.5e-05 Score=54.68 Aligned_cols=94 Identities=12% Similarity=0.062 Sum_probs=72.9
Q ss_pred CCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccccee-Eee-ecCCCEEEEecCCCcEEEEeccCCee
Q 031924 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD-ALL-KLDEDRVITGSENGLISLVGILPNRI 114 (150)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~-~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~ 114 (150)
...+.-+.|+|.-..+|.+..+|.+.++.+. + +.+-+++. +...++ +++ .++|+.++.|-.||+|++.|..++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~-qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-W-QRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-c-ceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 3467789999999999999999999999875 4 55556664 455555 777 89999999999999999999998887
Q ss_pred eeeccCCCCcceeEEEEcC
Q 031924 115 IQPIAEHSEYPIESLGIAS 133 (150)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~ 133 (150)
+.....-...+|..+-|++
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 7663332333588888864
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.7e-05 Score=57.51 Aligned_cols=144 Identities=10% Similarity=0.032 Sum_probs=91.4
Q ss_pred eeecC--cceEEEEcCCCeEEEEEcCCC---eeeeeeccCCCcEEEEEEEeCC-CEEEeecCCCeEEEEEcccccccccc
Q 031924 2 TFAAD--AMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~--~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
.|+|. ..+-++......-.+|++... .....+.+|...++.+.|+|.. ..+++++.|..+..||++........
T Consensus 74 qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys 153 (1081)
T KOG0309|consen 74 QWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS 153 (1081)
T ss_pred ecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence 35553 234444434445667887653 2334566888999999999874 46789999999999999866555554
Q ss_pred cccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe-eeeeccCCCCcceeEEEEcC-CccEEEeccccccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLGIAS-VLCFINSGFLSLNV 147 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v 147 (150)
+.. .......+. +.....+.+.+....|++||.+.+. ++..++.|.. .+..++|.. ....+.+++.++.|
T Consensus 154 ~~~-w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs-~vn~~~fnr~~~s~~~s~~~d~tv 226 (1081)
T KOG0309|consen 154 TSS-WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVS-SVNSIDFNRFKYSEIMSSSNDGTV 226 (1081)
T ss_pred eec-ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccce-eeehHHHhhhhhhhhcccCCCCce
Confidence 443 223333333 4333344445667789999998654 6777777766 477777764 23345555555543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0019 Score=44.70 Aligned_cols=137 Identities=12% Similarity=0.104 Sum_probs=90.3
Q ss_pred CeeecCcceEEEEcC---CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEccccccccc--
Q 031924 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSD-- 74 (150)
Q Consensus 1 i~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~-- 74 (150)
++++|+++.+..+.. ++++.+.|..+++.......-..+ ..+++.|+|++++... .++.+.++|.... ...+
T Consensus 121 ~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~~~ 198 (381)
T COG3391 121 LAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVRGS 198 (381)
T ss_pred EEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceeccc
Confidence 468888887777654 689999999998877664433344 8999999999776665 7789999996422 2221
Q ss_pred ---ccccccccceeEeeecCCCEEEEecCC---CcEEEEeccCCeeeee-ccCCCCcceeEEEEcCCccEEEec
Q 031924 75 ---RFVGLSPNSVDALLKLDEDRVITGSEN---GLISLVGILPNRIIQP-IAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 75 ---~~~~~~~~~v~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
.... ...+..-...+++..+...... +.+...|..++..... ...... ....+.++|+|+++-..
T Consensus 199 ~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 199 VGSLVGV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred ccccccc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEE
Confidence 1222 2333333447788765554433 5888899888776554 222222 25567889998876654
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.7e-05 Score=53.14 Aligned_cols=109 Identities=16% Similarity=0.105 Sum_probs=82.4
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeee-eccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccc----ccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTR-SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS----DRF 76 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~----~~~ 76 (150)
+++..+++++.|+..|.+++|+-..++.... ..+..+.+.....+++..+++.|+..|.|.++.+....... ..+
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence 3456788999999999999999877754322 22345567777888888889999999999999875322111 112
Q ss_pred -ccccccceeEee-ecCCCEEEEecCCCcEEEEeccC
Q 031924 77 -VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILP 111 (150)
Q Consensus 77 -~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~ 111 (150)
+. |...|+++. ++++..+++|...|.|..-.+.+
T Consensus 120 d~~-~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 120 DKS-HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccc-CCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 23 678899998 88999999999999999887765
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0015 Score=42.26 Aligned_cols=136 Identities=9% Similarity=0.045 Sum_probs=77.8
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEE-eCCCEEEeecCCCeEEEEEcccccccccccc--
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-- 77 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-- 77 (150)
.|.+ ++.++++-...+.|..|+..+++... +.... ...+++. +++. ++.+...+ +.++|... ++......
T Consensus 6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~-g~~~~~~~~~ 79 (246)
T PF08450_consen 6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSGG-IAVVDPDT-GKVTVLADLP 79 (246)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETTC-EEEEETTT-TEEEEEEEEE
T ss_pred EEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcCc-eEEEecCC-CcEEEEeecc
Confidence 5787 66677776689999999998886543 22222 6788888 5554 55554544 45558753 22221111
Q ss_pred -cc-cccceeEee-ecCCCEEEEecCC--------CcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEE-eccccc
Q 031924 78 -GL-SPNSVDALL-KLDEDRVITGSEN--------GLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFIN-SGFLSL 145 (150)
Q Consensus 78 -~~-~~~~v~~~~-~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~~~ 145 (150)
.. .....+.+. .++|++.++.... |.+..++.. ++..... ..-. ..+.++|+|+++.|. +-+...
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~-~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLG-FPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEES-SEEEEEEETTSSEEEEEETTTT
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcc-cccceEECCcchheeecccccc
Confidence 10 123344455 7888877766543 457777776 4433333 2223 377899999998654 444443
Q ss_pred c
Q 031924 146 N 146 (150)
Q Consensus 146 ~ 146 (150)
.
T Consensus 157 ~ 157 (246)
T PF08450_consen 157 R 157 (246)
T ss_dssp E
T ss_pred e
Confidence 3
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0009 Score=46.36 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=77.8
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccc-ee
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS-VD 85 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~-v~ 85 (150)
+..++.++.++.+..+|..+++.+.+... .....+ ...+..++.++.+|.+..+|.. .++..-+... .... ..
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~--~~~~~~vy~~~~~g~l~ald~~-tG~~~W~~~~-~~~~~~~ 329 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDF--AVDGGRIYLVDQNDRVYALDTR-GGVELWSQSD-LLHRLLT 329 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCc--EEECCEEEEEcCCCeEEEEECC-CCcEEEcccc-cCCCccc
Confidence 45566777889999999999987654432 111122 2346678888899999999985 3443322211 0111 11
Q ss_pred EeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCccee-EEEEcCCccEEEeccccccc
Q 031924 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE-SLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~s~~~~~~v 147 (150)
.. ...+..++.++.+|.++..|..+++.+........ .+. ...+ .++ .|..++.++.+
T Consensus 330 sp-~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~-~~~s~P~~-~~~-~l~v~t~~G~l 388 (394)
T PRK11138 330 AP-VLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS-GFLSEPVV-ADD-KLLIQARDGTV 388 (394)
T ss_pred CC-EEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC-cceeCCEE-ECC-EEEEEeCCceE
Confidence 11 11356778889999999999999988776643322 122 2222 233 45555666554
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00035 Score=48.12 Aligned_cols=144 Identities=10% Similarity=-0.024 Sum_probs=91.8
Q ss_pred eeecCcceEEEEcC-CCeEEEEEcCCCeeeee--eccCCCcEEEEEEEeC-C-CEEE-eecCCCeEEEEEcccccccccc
Q 031924 2 TFAADAMKLLGTSG-DGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKN-G-RKVV-CGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~-~-~~l~-~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
+.+.++.++.+.+. |..++++|++.-..+.- +..-.+.+. ...++. . ..++ +.-.++.+.++|-.........
T Consensus 60 ~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~ 138 (558)
T KOG0882|consen 60 AVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY 138 (558)
T ss_pred hccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccce
Confidence 34567778888676 99999999987654322 222222222 122222 1 1333 3346799999997644445555
Q ss_pred cccccccceeEee-ecCCCEEEEecCCCcEEEEeccC------Ceeeeec---------cCCCCcceeEEEEcCCccEEE
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILP------NRIIQPI---------AEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~------~~~~~~~---------~~~~~~~i~~~~~~~~~~~l~ 139 (150)
+++.|..+|.++. .+.+..+++....|.|.-|.... .+....+ ..... -..++.|+|+|..++
T Consensus 139 fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt-~pts~Efsp~g~qis 217 (558)
T KOG0882|consen 139 FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKT-EPTSFEFSPDGAQIS 217 (558)
T ss_pred ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccccccc-CccceEEccccCccc
Confidence 5555899999988 77888899988899999998762 1111111 12223 277899999999988
Q ss_pred eccccccc
Q 031924 140 SGFLSLNV 147 (150)
Q Consensus 140 s~~~~~~v 147 (150)
+-+.+..|
T Consensus 218 tl~~DrkV 225 (558)
T KOG0882|consen 218 TLNPDRKV 225 (558)
T ss_pred ccCcccEE
Confidence 77665544
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0022 Score=41.05 Aligned_cols=106 Identities=13% Similarity=0.189 Sum_probs=67.0
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCc----------EEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE----------LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
++..++.+..++.|..+|.++|+.+......... ...-....++ .++.++.++.+..+|.... +..-
T Consensus 121 ~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg-~~~w- 197 (238)
T PF13360_consen 121 DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG-EKLW- 197 (238)
T ss_dssp ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT-EEEE-
T ss_pred ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC-CEEE-
Confidence 4667888878999999999999987666543322 1122222234 6777777775333387643 3222
Q ss_pred cccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeee
Q 031924 76 FVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQ 116 (150)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 116 (150)
.. ............+..++.++.++.+..||+++++.+.
T Consensus 198 -~~-~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 198 -SK-PISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp -EE-CSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred -Ee-cCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 22 1222333335567777777799999999999998764
|
... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00011 Score=54.37 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=60.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~ 67 (150)
++|+|..-.|+.+-+-|.+.+|...+.+.......|..++..+.|+++|..++++..-|.+.+|...
T Consensus 65 LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 65 LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5799998899999999999999988887777777899999999999999999999999999999764
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.9e-05 Score=54.44 Aligned_cols=130 Identities=10% Similarity=0.040 Sum_probs=91.5
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEe---------ecCCCeEEEEEccccc-cccccccc
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC---------GSQSGTVLLYSWGYFK-DCSDRFVG 78 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---------~~~d~~i~i~~~~~~~-~~~~~~~~ 78 (150)
+++.|...|+|.++|+.++.....+.-|...|.++.|-....++-. |..-+.+.+-|+++.- +..+-..+
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 6788999999999999999877778889999999999766554322 2223456667776332 11221222
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEc-CCccEEE
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIA-SVLCFIN 139 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~ 139 (150)
..+.+|..+. +.-+++++..-.+..+.+||+++...++.....-. .++.+.|+ |.-.-+.
T Consensus 519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P-~it~leWsl~~~~si~ 580 (1062)
T KOG1912|consen 519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALP-LITVLEWSLPKHPSIK 580 (1062)
T ss_pred CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCC-cEEEEeecccCCCCcc
Confidence 1467788887 88899999999999999999988877766643322 28888998 4433333
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0016 Score=49.99 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=84.0
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEc--cc-----------
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW--GY----------- 68 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~--~~----------- 68 (150)
.|..+.+.++.+..+|.|.+-|.++... .....-+..|.+++|+||+..++..+..+++.+-+- .-
T Consensus 75 ~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~ 153 (1265)
T KOG1920|consen 75 QFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDE 153 (1265)
T ss_pred EEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccc
Confidence 3455777888888999999988877632 233345678999999999999988888777765331 00
Q ss_pred ---------cccccccccccccc---------------------ceeEee-ecCCCEEEEe-----cCCCcEEEEeccCC
Q 031924 69 ---------FKDCSDRFVGLSPN---------------------SVDALL-KLDEDRVITG-----SENGLISLVGILPN 112 (150)
Q Consensus 69 ---------~~~~~~~~~~~~~~---------------------~v~~~~-~~~~~~l~~~-----~~dg~i~~~d~~~~ 112 (150)
+++....|.+ ..+ .-+.+. .-+|.++++. .....|++||-. +
T Consensus 154 ~~sk~v~VGwGrkeTqfrg-s~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g 231 (1265)
T KOG1920|consen 154 RKSKFVNVGWGRKETQFRG-SEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G 231 (1265)
T ss_pred cccccceecccccceeeec-chhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c
Confidence 1121112221 100 011233 4477788773 333789999976 3
Q ss_pred eeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 113 RIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 113 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
. +.........--.+++|-|.|..+|+-.-
T Consensus 232 ~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~ 261 (1265)
T KOG1920|consen 232 A-LNSTSEPVEGLQHSLSWKPSGSLIAAIQC 261 (1265)
T ss_pred h-hhcccCcccccccceeecCCCCeEeeeee
Confidence 2 23222222212557899999998886443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00019 Score=52.49 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=70.5
Q ss_pred CcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeee
Q 031924 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQP 117 (150)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 117 (150)
+.+.|++++ +++|+-|+.+|.+++++.. +.. .+... |... ..+|.++++|+.||.|.+..+.+.+....
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~--~~~-~~~~~-~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ--GNP-KTNFD-HSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecC--Ccc-ccccc-cccc-----ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 345566654 6789999999999999874 333 22223 3322 56899999999999999999888776666
Q ss_pred ccCCCCcceeEEEEcCC-----ccEEEeccccc
Q 031924 118 IAEHSEYPIESLGIASV-----LCFINSGFLSL 145 (150)
Q Consensus 118 ~~~~~~~~i~~~~~~~~-----~~~l~s~~~~~ 145 (150)
+..+ . |+.+++++|+ .+.+++||..|
T Consensus 109 ~df~-r-piksial~Pd~~~~~sk~fv~GG~ag 139 (846)
T KOG2066|consen 109 YDFK-R-PIKSIALHPDFSRQQSKQFVSGGMAG 139 (846)
T ss_pred EecC-C-cceeEEeccchhhhhhhheeecCcce
Confidence 6433 3 6999999998 56788888875
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0004 Score=45.84 Aligned_cols=106 Identities=9% Similarity=0.061 Sum_probs=66.4
Q ss_pred cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc--cccccc-----cceeEee-ec-CCCEEEEecCCCcEE
Q 031924 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--FVGLSP-----NSVDALL-KL-DEDRVITGSENGLIS 105 (150)
Q Consensus 35 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~~~~~~-----~~v~~~~-~~-~~~~l~~~~~dg~i~ 105 (150)
.|..-++++.++.|...++++ .|-.|.+|++......... ++. |. .-|++.- +| ..+.++-.++.|.|+
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP-~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKP-HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccC-ccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 455678889999988888776 5678999988643322211 111 21 2233332 33 456788888999999
Q ss_pred EEeccCCe------eeeecc----------CCCCcceeEEEEcCCccEEEeccc
Q 031924 106 LVGILPNR------IIQPIA----------EHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 106 ~~d~~~~~------~~~~~~----------~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+-|++... .+.... +-.. +|..+.|+++|+++++-..
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivs-SISD~kFs~ngryIlsRdy 300 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVS-SISDFKFSDNGRYILSRDY 300 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhh-hhcceEEcCCCcEEEEecc
Confidence 99997321 111111 1112 4888999999999997653
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.9e-05 Score=54.12 Aligned_cols=108 Identities=16% Similarity=0.201 Sum_probs=71.6
Q ss_pred EcCCCeEEEEEcCCCeeeeeec--cCCCcEEEEEEEeC--CCEEEee-cCCCeEEEEEccccccccccc-----cccccc
Q 031924 13 TSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKN--GRKVVCG-SQSGTVLLYSWGYFKDCSDRF-----VGLSPN 82 (150)
Q Consensus 13 ~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~--~~~l~~~-~~d~~i~i~~~~~~~~~~~~~-----~~~~~~ 82 (150)
.+.|+-|++||.--++.+.... ..++.+.-+..-++ ...++.| +...+++++|.+.- .....+ ++ ...
T Consensus 800 ~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc-e~~~E~kVcna~~-Pna 877 (1034)
T KOG4190|consen 800 ASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC-EWTCELKVCNAPG-PNA 877 (1034)
T ss_pred eeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc-cceeeEEeccCCC-Cch
Confidence 4568889999998887654332 22333333333333 4444454 67789999998633 322222 23 334
Q ss_pred ceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCC
Q 031924 83 SVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHS 122 (150)
Q Consensus 83 ~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 122 (150)
.+.++. .+.|++++.+-.+|.|.+.|.++++.+..+...+
T Consensus 878 ~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme 918 (1034)
T KOG4190|consen 878 LTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME 918 (1034)
T ss_pred heeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc
Confidence 566777 7899999999999999999999999887665443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0046 Score=44.97 Aligned_cols=140 Identities=9% Similarity=-0.005 Sum_probs=82.2
Q ss_pred eecCcceEEEEc-CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC------------------------
Q 031924 3 FAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ------------------------ 57 (150)
Q Consensus 3 ~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------------ 57 (150)
++||++.+...+ ..+.+.+.|.++.+...++.-. +...-+.++++|+++++.+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 456777664443 4677888888887666554432 23456677778777766642
Q ss_pred ----------------CCeEEEEEccc----ccccccccccccccceeEee-ecCCCEEEEecC-CCcEEEEeccCCee-
Q 031924 58 ----------------SGTVLLYSWGY----FKDCSDRFVGLSPNSVDALL-KLDEDRVITGSE-NGLISLVGILPNRI- 114 (150)
Q Consensus 58 ----------------d~~i~i~~~~~----~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~-dg~i~~~d~~~~~~- 114 (150)
++.|.+.|.+. ..+....++. +.....+. +|+|+++++++. +.++.++|+.+.+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC--CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 23455555442 0122233322 22223344 889998877664 88999999976442
Q ss_pred -----------eeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 115 -----------IQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 115 -----------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
.....- +......+|+++|....|-..+..|
T Consensus 357 ~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv 398 (635)
T PRK02888 357 FDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQI 398 (635)
T ss_pred hhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeeccee
Confidence 222222 2235567899999877766655443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0034 Score=40.72 Aligned_cols=63 Identities=13% Similarity=0.059 Sum_probs=48.1
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 69 (150)
+.+++.|+..|.+.+.+.++|.....+...+.--......+++..+.+|+.|++.+..|.+..
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccccc
Confidence 567889999999999999999766555433221122344678999999999999999998754
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0068 Score=40.65 Aligned_cols=131 Identities=11% Similarity=0.098 Sum_probs=76.4
Q ss_pred eecCcceEEEEcC-----------CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEccc-c
Q 031924 3 FAADAMKLLGTSG-----------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGY-F 69 (150)
Q Consensus 3 ~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~-~ 69 (150)
..|+|.+.+.... -|.+..+|. .+...+.+..+-..-+.++||||++.++... ..+.+..|++.. .
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc
Confidence 4566665555433 133333343 3445555555456678999999998776664 457888887741 1
Q ss_pred cccc-----cccccccccceeEee-ecCCCEEEEecCCC-cEEEEeccCCeeeeeccCCCCcceeEEEEc-CCccE
Q 031924 70 KDCS-----DRFVGLSPNSVDALL-KLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLGIA-SVLCF 137 (150)
Q Consensus 70 ~~~~-----~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 137 (150)
+... ..+.. .+.....++ ..+|.+.+++..+| .|..|+.+ ++.+..+.-... .+++++|- |+.+.
T Consensus 197 g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~ 269 (307)
T COG3386 197 GPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNT 269 (307)
T ss_pred CccCCcceEEEccC-CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC-CCccceEeCCCcCE
Confidence 1111 11111 123333333 56677776555554 99999997 888877755544 37778885 44443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0034 Score=43.53 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=70.9
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCC--cEE-------EEEEEeCCCEEEeecCCCeEEEEEccccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE--ELT-------SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~-------~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
.+..+++++.++.+.-+|.++|+.+.+...... ... .-...-++..++.++.++.+..+|.+ .++..-+.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~-tG~~~W~~ 146 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAE-DGEVAWQT 146 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECC-CCCCcccc
Confidence 356777788899999999999988765543221 000 00011135677888899999999975 45655544
Q ss_pred ccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeecc
Q 031924 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 119 (150)
.. . ..+.+---..+..++.+..++.++.+|..+++.+....
T Consensus 147 ~~-~-~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 147 KV-A-GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred cC-C-CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 33 2 22221111134567778889999999999998776653
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=1.5e-05 Score=56.77 Aligned_cols=130 Identities=14% Similarity=0.168 Sum_probs=79.9
Q ss_pred eeec-CcceEEEEc----CCCeEEEEEcCCC--eee--eeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc
Q 031924 2 TFAA-DAMKLLGTS----GDGTLSVCNLRKN--TVQ--TRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 2 ~~~~-~~~~l~~~~----~d~~i~i~d~~~~--~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
+|++ |.+.|++|- .|..+.|||+.++ .+. ..+. +......+++|-.+.+.+.+|.....+.++|++....
T Consensus 109 AwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~ 188 (783)
T KOG1008|consen 109 AWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD 188 (783)
T ss_pred ccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh
Confidence 5555 556666663 4677999999876 111 1122 2344566889998899999999999999999973322
Q ss_pred cccccccccccceeEee-ec-CCCEEEEecCCCcEEEEe-ccC-CeeeeeccCCCC---cceeEEEEcCCc
Q 031924 72 CSDRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVG-ILP-NRIIQPIAEHSE---YPIESLGIASVL 135 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d-~~~-~~~~~~~~~~~~---~~i~~~~~~~~~ 135 (150)
....+. +..+..+. .| .++++++-. ||.|.+|| .+. ..+++.+...+. ..+..++|+|..
T Consensus 189 ~~~svn---Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 189 SVSSVN---TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred hhhhhh---hhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 222222 22233333 44 677887655 99999999 433 223343322221 128889999854
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00032 Score=53.03 Aligned_cols=94 Identities=14% Similarity=0.244 Sum_probs=66.9
Q ss_pred ceEEEEcCCCeEEEEEcCCCe-eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeE
Q 031924 8 MKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~ 86 (150)
..++.|+..|++-..|+...- +...-+...++|++++|+.+|..+..|-.+|.|.+||+. .++..+.+.. +..+.+.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~-~~k~l~~i~e-~~ap~t~ 177 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH-RAKILKVITE-HGAPVTG 177 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEcc-CCcceeeeee-cCCccce
Confidence 357778888899888877641 112223345699999999999999999999999999985 4466666665 5555554
Q ss_pred ee----ecCCCEEEEecCCCc
Q 031924 87 LL----KLDEDRVITGSENGL 103 (150)
Q Consensus 87 ~~----~~~~~~l~~~~~dg~ 103 (150)
+. ..++..++++...|.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc
Confidence 33 334556777777776
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00015 Score=31.53 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=27.2
Q ss_pred cccccccccceeEee-ecCCCEEEEecCCCcEEEEe
Q 031924 74 DRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVG 108 (150)
Q Consensus 74 ~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d 108 (150)
..+.. |...+.++. .++++.+++++.|+.+++|+
T Consensus 6 ~~~~~-~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKG-HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEe-cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34445 777888887 66778999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0099 Score=41.19 Aligned_cols=133 Identities=13% Similarity=0.125 Sum_probs=86.5
Q ss_pred eeecCcceEEEE-cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC---CCeEEEEEcccccccccccc
Q 031924 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~ 77 (150)
+.++.++.++.. ..++.+.+.|..+.+.......-. ....++++++++.+.++.. ++++.+.|... .+......
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~~~~~~ 157 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKVTATIP 157 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeEEEEEe
Confidence 456666655544 456899999988776665544322 5678999999988877765 68888888653 34444443
Q ss_pred cccccceeEeeecCCCEEEEe-cCCCcEEEEeccCCeeee-----eccCCCCcceeEEEEcCCccEEE
Q 031924 78 GLSPNSVDALLKLDEDRVITG-SENGLISLVGILPNRIIQ-----PIAEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 78 ~~~~~~v~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~ 139 (150)
. ...+......++|..+... ..++.+.+.|.......+ ..... . ....+.++|+|.++-
T Consensus 158 v-G~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~-~P~~i~v~~~g~~~y 222 (381)
T COG3391 158 V-GNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-T-GPAGIAVDPDGNRVY 222 (381)
T ss_pred c-CCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-C-CCceEEECCCCCEEE
Confidence 3 3344333448888855554 478899999987665553 12222 1 255688999998543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00059 Score=51.66 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=68.6
Q ss_pred CCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCC--c
Q 031924 48 NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE--Y 124 (150)
Q Consensus 48 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~ 124 (150)
.+..++.|+..|.+...|+...-.....=.. ...+|++++ +.+|..++.|-.+|.|.+||+..++.++.+..|.. .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~-v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNER-VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCc-cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 4667889999999999988532111111122 357788988 77999999999999999999999888888765543 2
Q ss_pred ceeEEEEcCCccEEEeccccc
Q 031924 125 PIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 125 ~i~~~~~~~~~~~l~s~~~~~ 145 (150)
.+-.+.+..++..+.++..-|
T Consensus 177 ~vi~v~~t~~nS~llt~D~~G 197 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGG 197 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCC
Confidence 344455556666676666555
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00031 Score=48.36 Aligned_cols=140 Identities=13% Similarity=-0.011 Sum_probs=93.2
Q ss_pred CcceEEEEcCCCeEEEEEcCCC---eeeeeeccCCCcEEEEEEEeCCCEEEeecC-CCeEEEEEccccccc-cccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC-SDRFVGLS 80 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~-~~~~~~~~ 80 (150)
-.+++.+++-||+++.|--..- +.+.....|...+.+++.+.++..+.+.+. |..+++||+...... ...+.. -
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-l 97 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD-L 97 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc-C
Confidence 3568899999999999975441 234555677788899999999999999776 999999998754322 112222 2
Q ss_pred ccceeEeeecCC---CEEEEecCCCcEEEEeccCCe--eeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 81 PNSVDALLKLDE---DRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 81 ~~~v~~~~~~~~---~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+..+....++.. ..-++.-.++.+.++|-...- ....-..|.. ||..+.+.+-+..+.+...+|-|
T Consensus 98 Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s-PV~~i~y~qa~Ds~vSiD~~gmV 168 (558)
T KOG0882|consen 98 PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS-PVKKIRYNQAGDSAVSIDISGMV 168 (558)
T ss_pred CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC-ceEEEEeeccccceeecccccee
Confidence 333433332221 233344467899999976432 3333345656 89999999998888887755543
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.005 Score=41.53 Aligned_cols=101 Identities=20% Similarity=0.208 Sum_probs=61.8
Q ss_pred cceEEEEcCCCeEEEEEcCCCe-eeeeecc-CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc-cccccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNT-VQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-GLSPNS 83 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-~~~~~~ 83 (150)
+..|+++ .++.|.+|++...+ ....... ....+.++.. .++++++|+.-..+.++.++........+. ...+..
T Consensus 98 ~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~ 174 (321)
T PF03178_consen 98 NGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW 174 (321)
T ss_dssp TTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE
T ss_pred CCEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc
Confidence 3445555 34699999998877 4432222 2224555544 467999999888888886643223222221 103445
Q ss_pred eeEeeec-CCCEEEEecCCCcEEEEecc
Q 031924 84 VDALLKL-DEDRVITGSENGLISLVGIL 110 (150)
Q Consensus 84 v~~~~~~-~~~~l~~~~~dg~i~~~d~~ 110 (150)
++++... +++.++.+..+|.+.++...
T Consensus 175 v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 175 VTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 6666533 66799999999999998765
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00026 Score=52.53 Aligned_cols=103 Identities=15% Similarity=0.079 Sum_probs=73.7
Q ss_pred EEEEEEEeCCCEEEeec----CCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCee
Q 031924 40 LTSVVLMKNGRKVVCGS----QSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRI 114 (150)
Q Consensus 40 v~~~~~~~~~~~l~~~~----~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~ 114 (150)
.+-..|+|...+|++++ ..|++.||-- .+...... . .+-.+++++ +|..-.|+.|..-|.+.+|...+.+.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfad--tGEPqr~V-t-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFAD--TGEPQRDV-T-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEec--CCCCCccc-c-cceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 34567888888887775 4588998842 23322222 2 233455666 66767788888899999999877666
Q ss_pred eeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 115 IQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
-.....|+. +|..+.|||+|..+.++..-+.|
T Consensus 94 htv~~th~a-~i~~l~wS~~G~~l~t~d~~g~v 125 (1416)
T KOG3617|consen 94 HTVVETHPA-PIQGLDWSHDGTVLMTLDNPGSV 125 (1416)
T ss_pred eeeccCCCC-CceeEEecCCCCeEEEcCCCcee
Confidence 555556766 79999999999999998876654
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.012 Score=39.70 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=73.8
Q ss_pred CeEEEEEcCCC-----eee-eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEeeec
Q 031924 17 GTLSVCNLRKN-----TVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKL 90 (150)
Q Consensus 17 ~~i~i~d~~~~-----~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~ 90 (150)
|.|.++++... +.. .......++|.+++-- ++. ++++ .++.+.+|++....+.........+..+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~- 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV- 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEec-
Confidence 89999999884 221 1123446788888766 344 4444 347999999964431222211102234444443
Q ss_pred CCCEEEEecCCCcEEEEeccC-CeeeeeccC-CCCcceeEEEEcCCccEEEecccccccc
Q 031924 91 DEDRVITGSENGLISLVGILP-NRIIQPIAE-HSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 91 ~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+++++.|.....+.++..+. .+.+..+.. .....+.++.|-++++.++.+...+++.
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~ 197 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLF 197 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEE
T ss_pred cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEE
Confidence 356888888878788774433 232333322 1122488888886667888888888764
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00061 Score=42.96 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=62.7
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeee-eeccCCCcEEEE-EEEeCCCEEEeecCCCeEEEEEcccccccccccccccc-cc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSV-VLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-NS 83 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~-~~ 83 (150)
+..+++|+.+|.|.+|.......+. ....-...+.++ .--.++.+..+++.||.++.|+.. ..+.+...-. |. .+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~-p~k~~g~~g~-h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK-PNKVLGYVGQ-HNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccc-cCceeeeecc-ccCCC
Confidence 4578889999999999887322221 111222233332 222345678889999999999985 4454444434 44 33
Q ss_pred eeEee-ecCCCEEEEe--cCCCcEEEEeccC
Q 031924 84 VDALL-KLDEDRVITG--SENGLISLVGILP 111 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~--~~dg~i~~~d~~~ 111 (150)
..... ...++.+... +.|..++.|++..
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhh
Confidence 33333 5556666666 7777888887754
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.003 Score=48.57 Aligned_cols=108 Identities=15% Similarity=0.171 Sum_probs=71.0
Q ss_pred CeeecCcceEEEE-----cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec---CCCeEEEEEccccccc
Q 031924 1 MTFAADAMKLLGT-----SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFKDC 72 (150)
Q Consensus 1 i~~~~~~~~l~~~-----~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~~~~~~~~~ 72 (150)
|.|.-||+++++. .+...|++||-+ |..........+.-.+++|-|.|..+++-. .|+.|.+|.-. |-.
T Consensus 201 IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN--GL~ 277 (1265)
T KOG1920|consen 201 ISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN--GLR 277 (1265)
T ss_pred EEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC--Ccc
Confidence 4677899999883 333799999988 654444445555667899999999888753 45678888743 322
Q ss_pred cc----ccccccccceeEee-ecCCCEEEE---ecCCCcEEEEeccCC
Q 031924 73 SD----RFVGLSPNSVDALL-KLDEDRVIT---GSENGLISLVGILPN 112 (150)
Q Consensus 73 ~~----~~~~~~~~~v~~~~-~~~~~~l~~---~~~dg~i~~~d~~~~ 112 (150)
-. .++. ....+..+. +.++..|+. ......|++|...+.
T Consensus 278 hg~f~l~~p~-de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 278 HGEFVLPFPL-DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccccCCcc-cccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 22 2222 233366666 667777777 444556999987653
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0038 Score=46.76 Aligned_cols=97 Identities=15% Similarity=0.214 Sum_probs=67.2
Q ss_pred eEEEEcCCCeEEEEEcCCCe-eeeeec----cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccc
Q 031924 9 KLLGTSGDGTLSVCNLRKNT-VQTRSE----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~-~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 83 (150)
.-+.|-.++.+..||.+-.. .+.... ......+|++-..+| +|++|+.+|.||+||- ...+....+++ -..+
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~-lG~p 620 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPG-LGDP 620 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCC-CCCC
Confidence 45566678899999988632 221111 223456777666555 6999999999999994 33345555666 7789
Q ss_pred eeEee-ecCCCEEEEecCCCcEEEEec
Q 031924 84 VDALL-KLDEDRVITGSENGLISLVGI 109 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~~~dg~i~~~d~ 109 (150)
|..+. ..+|+++++.+ +..+.+++.
T Consensus 621 I~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 621 IIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eeEEEecCCCcEEEEee-cceEEEEEE
Confidence 99998 88999988766 456677764
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0011 Score=31.28 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=27.9
Q ss_pred CCcEEEEEEEeCCCEEEeecCCCeEEEEEc
Q 031924 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~ 66 (150)
...|.+++|+|....++.++.+|.|.+|.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 457999999999999999999999999987
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.028 Score=39.28 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=61.0
Q ss_pred eeecCcceEEEE-cCC----CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC-----------CeEEEEE
Q 031924 2 TFAADAMKLLGT-SGD----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-----------GTVLLYS 65 (150)
Q Consensus 2 ~~~~~~~~l~~~-~~d----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~i~~ 65 (150)
.++|++++++.+ +.. .+++++|+++++.+...... .....+.|.++++.|+-...+ ..|+.|.
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 578999988865 222 45999999999766432111 112349999998877654422 2467777
Q ss_pred ccccccc-ccccccccccc--eeEee-ecCCCEEEEecC---C-CcEEEEeccCC
Q 031924 66 WGYFKDC-SDRFVGLSPNS--VDALL-KLDEDRVITGSE---N-GLISLVGILPN 112 (150)
Q Consensus 66 ~~~~~~~-~~~~~~~~~~~--v~~~~-~~~~~~l~~~~~---d-g~i~~~d~~~~ 112 (150)
+.+.... .-.+.. .... ...+. +.++++++.... + ..+++.++...
T Consensus 209 ~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 209 LGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp TTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 6533221 112222 2222 22333 778887765432 2 35677787654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.029 Score=38.71 Aligned_cols=137 Identities=10% Similarity=0.005 Sum_probs=71.0
Q ss_pred CeeecCcceEEEEc-----------CCC-eEEEEEcCC--Cee--eeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEE
Q 031924 1 MTFAADAMKLLGTS-----------GDG-TLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64 (150)
Q Consensus 1 i~~~~~~~~l~~~~-----------~d~-~i~i~d~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 64 (150)
|+|+++++++++.. ..+ .|.+++-.. ++. ...+.......+.+++.++| +++++.....++.
T Consensus 19 ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i~~~~ 96 (367)
T TIGR02604 19 VCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDILFLR 96 (367)
T ss_pred eeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeEEEEe
Confidence 57889998887753 223 777776543 332 22333334456889999888 4444444433343
Q ss_pred Eccccc----c---ccccccccc----ccceeEee-ecCCCEEEEecCC-------------------CcEEEEeccCCe
Q 031924 65 SWGYFK----D---CSDRFVGLS----PNSVDALL-KLDEDRVITGSEN-------------------GLISLVGILPNR 113 (150)
Q Consensus 65 ~~~~~~----~---~~~~~~~~~----~~~v~~~~-~~~~~~l~~~~~d-------------------g~i~~~d~~~~~ 113 (150)
|....+ + ....+.. . ......+. .++|.+.++-+.. |.|.-++...++
T Consensus 97 d~~gdg~ad~~~~~l~~~~~~-~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~ 175 (367)
T TIGR02604 97 DKDGDDKADGEREVLLSGFGG-QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK 175 (367)
T ss_pred CCCCCCCCCCccEEEEEccCC-CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe
Confidence 442211 1 1112221 1 11233444 6777766654421 345555554443
Q ss_pred eeeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 114 IIQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 114 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
. ..+..... -...++|+|+|+++++-.
T Consensus 176 ~-e~~a~G~r-np~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 176 L-RVVAHGFQ-NPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred E-EEEecCcC-CCccceECCCCCEEEEcc
Confidence 2 23322112 256789999999887643
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.034 Score=39.02 Aligned_cols=47 Identities=11% Similarity=0.259 Sum_probs=34.6
Q ss_pred eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEc
Q 031924 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 18 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~ 66 (150)
.|.+|+.. |+.+..+.-..+.+.++.|..+ ..|++...||++++||+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDL 108 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeC
Confidence 47788765 4455555544488999999875 45667779999999987
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.023 Score=40.75 Aligned_cols=105 Identities=10% Similarity=0.039 Sum_probs=62.3
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee------------------cCCCeEEEEEccccc
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG------------------SQSGTVLLYSWGYFK 70 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------~~d~~i~i~~~~~~~ 70 (150)
.++.++.+|.+..+|.++|+.+....... ..++.+| ..++.+ ..+|.+..+|.. .+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~-tG 376 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK-TG 376 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCC-CC
Confidence 57778889999999999998876543210 1122222 222221 235667777764 33
Q ss_pred cccccccccc--c------cce-eEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccC
Q 031924 71 DCSDRFVGLS--P------NSV-DALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (150)
Q Consensus 71 ~~~~~~~~~~--~------~~v-~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 120 (150)
+.+-+... . . ... ..-....+..++.++.||.++.+|.++++.+...+.
T Consensus 377 ~~~W~~~~-~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 377 KVVWEKRE-GTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred cEeeEeeC-CccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 43332221 1 0 111 111123567888899999999999999998877654
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.024 Score=36.87 Aligned_cols=65 Identities=15% Similarity=0.274 Sum_probs=38.0
Q ss_pred CeeecCcc-eEEEEcCCCeEEEEEcCCCeeeeeeccC-CCcEEEEEEEeCCCEEEeecCCCeEEEEEc
Q 031924 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 1 i~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~ 66 (150)
|+|+|+.+ ++++....+.|..++.+ |+.+.++.-. .+....+++..++.++++.-.++.+.++++
T Consensus 27 LTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 27 LTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred cEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 57899755 66666788888888864 5555544322 245566666665655555545566665554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.034 Score=38.15 Aligned_cols=145 Identities=11% Similarity=0.110 Sum_probs=75.1
Q ss_pred CeeecCcceEEEE--cC---CCeEEEEEcCCCeeeeeec-cCC---CcEEEEEEE-eCC-CEEEeecCCCeEEEEEcccc
Q 031924 1 MTFAADAMKLLGT--SG---DGTLSVCNLRKNTVQTRSE-FSE---EELTSVVLM-KNG-RKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 1 i~~~~~~~~l~~~--~~---d~~i~i~d~~~~~~~~~~~-~~~---~~v~~~~~~-~~~-~~l~~~~~d~~i~i~~~~~~ 69 (150)
+.|.++++.++.. .. ...+.++|..+++...... ... +......+. +++ .++.....+|.-++|-+...
T Consensus 189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~ 268 (353)
T PF00930_consen 189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD 268 (353)
T ss_dssp EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT
T ss_pred ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc
Confidence 3577887733332 22 2345567777665432221 111 222345554 554 44555557887666655434
Q ss_pred cccccccccccccceeEee--ecCCC-EEEEecCCC----cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 70 KDCSDRFVGLSPNSVDALL--KLDED-RVITGSENG----LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~~--~~~~~-~l~~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
+.....+.. ....|..+. ..+++ +.+++..++ .++..++..+..++.+...... -..+.|||+|++++-..
T Consensus 269 ~~~~~~lT~-G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~-~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 269 GGKPRQLTS-GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD-HYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SSEEEESS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST-TEEEEE-TTSSEEEEEE
T ss_pred ccceecccc-CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC-ceEEEECCCCCEEEEEE
Confidence 444445554 455665544 45544 444555432 4555566623444555444332 24899999999988666
Q ss_pred ccccc
Q 031924 143 LSLNV 147 (150)
Q Consensus 143 ~~~~v 147 (150)
...++
T Consensus 347 s~~~~ 351 (353)
T PF00930_consen 347 SGPDT 351 (353)
T ss_dssp ESSSS
T ss_pred cCCCC
Confidence 55443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00053 Score=51.31 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=63.6
Q ss_pred eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCC--cEEEE
Q 031924 31 TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENG--LISLV 107 (150)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg--~i~~~ 107 (150)
..+..+....+|++|+.+.++|++|+..|.|++|++. .|.......+ |..+++-+- +.+|..+++.+.-. -..+|
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~-sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVS-SGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEcc-Cccccccccc-cccccccccccCCcceeeeeccccCchHHHh
Confidence 4455677889999999999999999999999999985 5677778888 999998887 67887766655433 46789
Q ss_pred eccC
Q 031924 108 GILP 111 (150)
Q Consensus 108 d~~~ 111 (150)
++.+
T Consensus 1173 ~~~s 1176 (1516)
T KOG1832|consen 1173 DASS 1176 (1516)
T ss_pred cccc
Confidence 8854
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.062 Score=40.48 Aligned_cols=115 Identities=13% Similarity=0.093 Sum_probs=72.0
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCC----CeeeeeeccCCCcEEEEEEEeCCCE-EEeecCCCeEEEEEccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
+.+.+-+.+++|-.+|.|..+.-.- +..........++|+.+.+..+++. +++++. ..|.+|.+..........
T Consensus 132 ~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt-~~V~~y~l~gr~p~~~~l 210 (933)
T KOG2114|consen 132 AVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATT-EQVMLYSLSGRTPSLKVL 210 (933)
T ss_pred EEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEec-ceeEEEEecCCCcceeee
Confidence 4556678899999999999885321 2122223344679999999988877 334433 468899886332223445
Q ss_pred ccccccceeEeeecCCCE-EEEecCCCcEEEEeccCCeeeeecc
Q 031924 77 VGLSPNSVDALLKLDEDR-VITGSENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~ 119 (150)
.. |.....|-...++.. +++++ +..+.+|+....+.-..+.
T Consensus 211 d~-~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 211 DN-NGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cc-CCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 55 666677766333333 54443 4578999987655555554
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.037 Score=36.36 Aligned_cols=125 Identities=16% Similarity=0.194 Sum_probs=71.5
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccc---------
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD--------- 74 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~--------- 74 (150)
...++.|+.|..+| +.+++........... ....|..+...++-+.+++-+ |+.+.++++........
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 34678888998888 8999983322222222 223399999999877776664 49999999864322211
Q ss_pred -----ccccccccceeEee---ecCCCEEEEecCCCcEEEEeccCC-----eeeeeccCCCCcceeEEEEcCCc
Q 031924 75 -----RFVGLSPNSVDALL---KLDEDRVITGSENGLISLVGILPN-----RIIQPIAEHSEYPIESLGIASVL 135 (150)
Q Consensus 75 -----~~~~~~~~~v~~~~---~~~~~~l~~~~~dg~i~~~d~~~~-----~~~~~~~~~~~~~i~~~~~~~~~ 135 (150)
.+. ....+.... ...+...+.......|.+|..... +..+.+.- ++ .+..++|.++.
T Consensus 81 ~~~~~~~~--~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~-~~~~i~~~~~~ 150 (275)
T PF00780_consen 81 RSLPTKLP--ETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PD-PPSSIAFLGNK 150 (275)
T ss_pred cccccccc--ccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CC-CcEEEEEeCCE
Confidence 111 122233332 233333444444558888876542 34455433 24 48888888433
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.041 Score=36.44 Aligned_cols=142 Identities=13% Similarity=0.063 Sum_probs=82.5
Q ss_pred CeeecC-cceEEEEcCCCe-EEEEEcCCCeeeeeeccCCC--cEEEEEEEeCCCEEEeecC-----CCeEEEEEcccccc
Q 031924 1 MTFAAD-AMKLLGTSGDGT-LSVCNLRKNTVQTRSEFSEE--ELTSVVLMKNGRKVVCGSQ-----SGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~-----d~~i~i~~~~~~~~ 71 (150)
|+|+|. ..-++.+-.-|+ ..++|....+....+...++ ..---.|+|||.+|...-. -|.|-+||.+..-+
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq 152 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ 152 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence 456664 334555545454 45788877655444333222 2334468999999976533 27899999874335
Q ss_pred cccccccccccceeEee-ecCCCEEEEecCC-------C-----------cEEEEeccCCeeeeeccCC---CCcceeEE
Q 031924 72 CSDRFVGLSPNSVDALL-KLDEDRVITGSEN-------G-----------LISLVGILPNRIIQPIAEH---SEYPIESL 129 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~d-------g-----------~i~~~d~~~~~~~~~~~~~---~~~~i~~~ 129 (150)
.+..+.. |.-.-..+. ..||+.++.+... | .+.+.|..++..+.+..-. ...++..+
T Consensus 153 rvgE~~t-~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 153 RVGEFST-HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred eeccccc-CCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 5566665 543333344 7788888766431 1 2333454455554433211 11358999
Q ss_pred EEcCCccEEEeccc
Q 031924 130 GIASVLCFINSGFL 143 (150)
Q Consensus 130 ~~~~~~~~l~s~~~ 143 (150)
+..+||+..+.+-.
T Consensus 232 d~g~dgtvwfgcQy 245 (366)
T COG3490 232 DIGRDGTVWFGCQY 245 (366)
T ss_pred eeCCCCcEEEEEEe
Confidence 99999998776544
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.072 Score=38.69 Aligned_cols=47 Identities=11% Similarity=-0.050 Sum_probs=32.2
Q ss_pred CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccE
Q 031924 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCF 137 (150)
Q Consensus 91 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 137 (150)
.+.+++.+..+|.++.+|.++++.+..+.......-.=+.|.-+|+.
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~q 517 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQ 517 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEE
Confidence 45677888889999999999999888775443321222344456654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.055 Score=39.82 Aligned_cols=130 Identities=12% Similarity=0.043 Sum_probs=70.6
Q ss_pred eeecCcceEEEEc------CCC--eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC------------CeE
Q 031924 2 TFAADAMKLLGTS------GDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS------------GTV 61 (150)
Q Consensus 2 ~~~~~~~~l~~~~------~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------~~i 61 (150)
+++|+++.++..- .|. .|.+++.. +.. ..+.. ....+.-.|+|+|+.+++.... +.+
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql 432 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL 432 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCCCceE
Confidence 5789998887664 243 44455542 222 22222 1237788999998877766432 222
Q ss_pred EEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEE---EeccCCe-ee---eeccCCCCcceeEEEEcC
Q 031924 62 LLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISL---VGILPNR-II---QPIAEHSEYPIESLGIAS 133 (150)
Q Consensus 62 ~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~---~d~~~~~-~~---~~~~~~~~~~i~~~~~~~ 133 (150)
.+.+++ .+...+ . ....|..+. +++|..++... ++.|++ -....+. .+ ..+.......+..+.|.+
T Consensus 433 ~~~~vd-~ge~~~---~-~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~ 506 (591)
T PRK13616 433 ARTPVD-ASAVAS---R-VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT 506 (591)
T ss_pred EEEecc-Cchhhh---c-cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec
Confidence 222332 111111 1 244577777 99999887655 477777 3333343 11 112221221367899999
Q ss_pred CccEEEe
Q 031924 134 VLCFINS 140 (150)
Q Consensus 134 ~~~~l~s 140 (150)
++.+++.
T Consensus 507 ~~~L~V~ 513 (591)
T PRK13616 507 GDSLVVG 513 (591)
T ss_pred CCEEEEE
Confidence 9986643
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.072 Score=37.79 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=37.9
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~ 66 (150)
|.+|...+.+ .|.+||+++++.+.++... .|..+.|+++|.+++..+.+ .+.+++.
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 6666666444 8999999999988887743 48999999999999888755 5666664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.062 Score=37.55 Aligned_cols=108 Identities=24% Similarity=0.275 Sum_probs=63.7
Q ss_pred cEEEEEEEeCCCEEEeecCCCeEEEEEcccccccc----------------------------c--------------cc
Q 031924 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS----------------------------D--------------RF 76 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~----------------------------~--------------~~ 76 (150)
.|+.+.|+++...|++|...|.+-+|.+...+..- . .+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 46788888888888888888888888664221000 0 00
Q ss_pred ccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeee--ccC-----CCCcceeEEEEc-----CCc---cEEEec
Q 031924 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQP--IAE-----HSEYPIESLGIA-----SVL---CFINSG 141 (150)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~-----~~~~~i~~~~~~-----~~~---~~l~s~ 141 (150)
.. ..++|+++...+=.+++.|..+|.+.+.|++....+.. +.. .....++++.|+ .|+ -.+..|
T Consensus 83 ~~-~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DA-KQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ----S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred ec-cCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 11 23556677655667999999999999999987665543 212 112237777776 233 356666
Q ss_pred cccccc
Q 031924 142 FLSLNV 147 (150)
Q Consensus 142 ~~~~~v 147 (150)
...|++
T Consensus 162 Tn~G~v 167 (395)
T PF08596_consen 162 TNSGNV 167 (395)
T ss_dssp ETTSEE
T ss_pred eCCCCE
Confidence 666654
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.002 Score=30.42 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=23.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcC
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLR 25 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~ 25 (150)
+.|+|...+|+.+..+|.|.+|.+.
T Consensus 17 ~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 17 MSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred EEECCCCCEEEEEECCCeEEEEECC
Confidence 4799999999999999999999983
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.074 Score=37.58 Aligned_cols=130 Identities=11% Similarity=0.094 Sum_probs=74.9
Q ss_pred cceEEEEcCCCeEEEEEcCCCe---eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-c--ccccccccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-D--CSDRFVGLS 80 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~--~~~~~~~~~ 80 (150)
++++++. ..|.+.-|...... ++..-...++++.++.|++|++.+++--.+.+|.+++..... + ..++.+. .
T Consensus 34 Nkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~-k 111 (657)
T KOG2377|consen 34 NKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT-K 111 (657)
T ss_pred cceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc-C
Confidence 3344333 44455555554322 121122346799999999999999999999999999973111 1 1122223 3
Q ss_pred ccceeEeeecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 81 PNSVDALLKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 81 ~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
...|...+..+...++.-...| +-+|...+ .+.++..+.|.. .|.-..|.++.+.+.-
T Consensus 112 ~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~-nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 112 NANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNL-NVNWYMYCPETAVILL 170 (657)
T ss_pred cceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhccc-CccEEEEccccceEee
Confidence 3445555544445555554443 34554333 234555555555 4888899998876443
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.039 Score=39.46 Aligned_cols=135 Identities=10% Similarity=0.063 Sum_probs=81.2
Q ss_pred cCcceEEE-EcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCC-------EEEeecCCCeEEEEEcccccccccc-
Q 031924 5 ADAMKLLG-TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-------KVVCGSQSGTVLLYSWGYFKDCSDR- 75 (150)
Q Consensus 5 ~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~i~~~~~~~~~~~~- 75 (150)
.+..+|+. +.....++-.|++.|+.+.....+..- -+.|.|..+ .-++|-.+..|.-.|.+..+..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 45555554 445667888899999988777766543 456666421 1234445555555576654422211
Q ss_pred -ccc-ccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 76 -FVG-LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 76 -~~~-~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
++. +......+.......+++.++..|.|++||--..+....+++... .|..+..+.+|.++...+
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATC 622 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEee
Confidence 111 012233344444567999999999999998654444444444445 588999999998765444
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.01 Score=45.78 Aligned_cols=137 Identities=15% Similarity=-0.014 Sum_probs=85.7
Q ss_pred eecCcceEEEE--cCCCeEEEEEcCCCee--------ee---eeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccc
Q 031924 3 FAADAMKLLGT--SGDGTLSVCNLRKNTV--------QT---RSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGY 68 (150)
Q Consensus 3 ~~~~~~~l~~~--~~d~~i~i~d~~~~~~--------~~---~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~ 68 (150)
..+|....++. +.+-.|..||++.-.. +. ..........++.|+|. -...++...|+.|++..+..
T Consensus 108 ~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~ 187 (1405)
T KOG3630|consen 108 CFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ 187 (1405)
T ss_pred eccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhh
Confidence 34565544443 3444788999876321 11 11122335678888886 33356667889999987754
Q ss_pred ccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCC--eeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 69 FKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPN--RIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
..+....++. ....++++ ++.|..++.|-..|++..|...-. ..+......+.+.|.++.|-..-.+++.-
T Consensus 188 ~~~~v~s~p~--t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 188 LAQNVTSFPV--TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred hhhhhcccCc--ccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 4444555543 45566766 899999999999999999876321 22222222223469999998888777653
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.057 Score=39.73 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=50.5
Q ss_pred CcEEEEEEEeCCCEEEeec------CCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecC----------
Q 031924 38 EELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSE---------- 100 (150)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~------~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~---------- 100 (150)
..+...+++|+|+.++..- .|..-.+|-....+.. ..+.. .. ....-. +++|+.+.+...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-GH-SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-CC-CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678889999999886554 2433344433212222 22221 11 123222 667665555432
Q ss_pred --CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 101 --NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 101 --dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
.+.+.+.++..+...+ .... .|..+.|||||..+|.
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g-~Issl~wSpDG~RiA~ 464 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPG-PISELQLSRDGVRAAM 464 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCC-CcCeEEECCCCCEEEE
Confidence 2333333443333222 2233 5999999999998775
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.1 Score=37.49 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=66.1
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCC------cEE--EEEEEeCCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE------ELT--SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
+..++.++.++.+..+|.++++.+.+...... .+. .+.. .++..++.++.++.+..+|.+ .++.+-++..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~~g~v~AlD~~-TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTFDGRLVALDAE-TGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecCCCeEEEEECC-CCCEeeeecC
Confidence 44667777889999999999987765543222 000 1111 122678888899999999985 4555544432
Q ss_pred ccccc-----eeEeeecCCCEEEEec---------CCCcEEEEeccCCeeeeecc
Q 031924 79 LSPNS-----VDALLKLDEDRVITGS---------ENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 79 ~~~~~-----v~~~~~~~~~~l~~~~---------~dg~i~~~d~~~~~~~~~~~ 119 (150)
.... +.+--...+..++.++ .++.+..+|..+++.+..+.
T Consensus 139 -~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 139 -NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred -CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 1110 1110011234555554 36788999999988776653
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.072 Score=40.82 Aligned_cols=126 Identities=18% Similarity=0.207 Sum_probs=78.8
Q ss_pred eEEEEEcCCCeeeeeeccC--C--CcEEEEEEEeC-CCEEEeec----------CCCeEEEEEccccccccccccc-ccc
Q 031924 18 TLSVCNLRKNTVQTRSEFS--E--EELTSVVLMKN-GRKVVCGS----------QSGTVLLYSWGYFKDCSDRFVG-LSP 81 (150)
Q Consensus 18 ~i~i~d~~~~~~~~~~~~~--~--~~v~~~~~~~~-~~~l~~~~----------~d~~i~i~~~~~~~~~~~~~~~-~~~ 81 (150)
.++++|.++-+.+...+.. + ..+.++.|..| +.++++|+ ..|.|.+|.+.. .+.++.... .-.
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~v~ 829 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETVVK 829 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeeeec
Confidence 3566776666554333221 1 24556668777 77888875 257888888764 222222211 024
Q ss_pred cceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 82 NSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+.+.++.-.+|++++. -+..|++|+..+++.++.-..+.. ++..+...-.|..++.|..-..+
T Consensus 830 Gav~aL~~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~-~~~aL~l~v~gdeI~VgDlm~Si 892 (1096)
T KOG1897|consen 830 GAVYALVEFNGKLLAG--INQSVRLYEWTTERELRIECNISN-PIIALDLQVKGDEIAVGDLMRSI 892 (1096)
T ss_pred cceeehhhhCCeEEEe--cCcEEEEEEccccceehhhhcccC-CeEEEEEEecCcEEEEeeccceE
Confidence 4566666667887764 456899999988766665545544 67788888888888887654433
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.036 Score=39.59 Aligned_cols=94 Identities=12% Similarity=0.163 Sum_probs=62.6
Q ss_pred EEcCCCeEEEEEcCCCe--eeeeeccC----CCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccccee
Q 031924 12 GTSGDGTLSVCNLRKNT--VQTRSEFS----EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (150)
Q Consensus 12 ~~~~d~~i~i~d~~~~~--~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 85 (150)
.|-.++.|.-||++-.. .+...+.+ .....|.+-.. ..++++|+.+|.|++||- ...+....+++ -..+|+
T Consensus 399 vGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdr-i~~~AKTAlPg-LG~~I~ 475 (644)
T KOG2395|consen 399 VGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDR-IGRRAKTALPG-LGDAIK 475 (644)
T ss_pred EeecCCceEEecccccCcceeeeeeccccccccccceeeecC-CceEEEeecCCcEEeehh-hhhhhhhcccc-cCCcee
Confidence 45567788899987532 22222332 22344544433 457999999999999995 34355566777 788899
Q ss_pred Eee-ecCCCEEEEecCCCcEEEEec
Q 031924 86 ALL-KLDEDRVITGSENGLISLVGI 109 (150)
Q Consensus 86 ~~~-~~~~~~l~~~~~dg~i~~~d~ 109 (150)
.+. ..+|++|+..+ +..+.+.++
T Consensus 476 hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 476 HVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eEEeeccCcEEEEec-ccEEEEEEE
Confidence 888 88999887655 556666665
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.19 Score=36.98 Aligned_cols=136 Identities=13% Similarity=0.017 Sum_probs=73.3
Q ss_pred cceEEEEcCC------CeEEEEEcCCCeeeeeeccCCC-cEEEEEEEeCCCEEEeecCC------CeEEEEEcccccccc
Q 031924 7 AMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSEE-ELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDCS 73 (150)
Q Consensus 7 ~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~~~~ 73 (150)
+.+++.|+.+ ..+..||..+++......-... .-.+++. -++...++|+.| .++..||.... +..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~-~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTN-QWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccCCCcccceEEEecCCCC-cee
Confidence 4455666655 4677888887743322211111 2233333 346777888888 35677787533 333
Q ss_pred ccccccccccee-EeeecCCCEEEEecCCCc-----EEEEeccCCeeeeeccCCCCcceeEE-EEcCCccEEEecccccc
Q 031924 74 DRFVGLSPNSVD-ALLKLDEDRVITGSENGL-----ISLVGILPNRIIQPIAEHSEYPIESL-GIASVLCFINSGFLSLN 146 (150)
Q Consensus 74 ~~~~~~~~~~v~-~~~~~~~~~l~~~~~dg~-----i~~~d~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~s~~~~~~ 146 (150)
..-+- ...... .+...+|.+.+.|+.||. +-.||..+.+- ........ +.... ...-+|.+.+.||.++.
T Consensus 363 ~~a~M-~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W-~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 363 PVAPM-NTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKW-TPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred ccCCc-cCccccceeEEECCEEEEEeccccccccccEEEecCCCCcc-cccCCCCc-ceeeeEEEEECCEEEEEcCcCCC
Confidence 21111 112222 334668889999999874 66777765542 11111111 12222 23457888888887765
Q ss_pred c
Q 031924 147 V 147 (150)
Q Consensus 147 v 147 (150)
-
T Consensus 440 ~ 440 (571)
T KOG4441|consen 440 S 440 (571)
T ss_pred c
Confidence 5
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.1 Score=33.66 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=60.2
Q ss_pred CcEEEEEEEeCCCEE-EeecCCCeEEEEEcccc-ccc-----ccccccc--cccce-eEee-ecCCCEEEEecCCCcEEE
Q 031924 38 EELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYF-KDC-----SDRFVGL--SPNSV-DALL-KLDEDRVITGSENGLISL 106 (150)
Q Consensus 38 ~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~-~~~-----~~~~~~~--~~~~v-~~~~-~~~~~~l~~~~~dg~i~~ 106 (150)
.-.+.++|+.+.+.+ +.-+.+-.|..||.... +.. +..+... .+... ..++ ...|++.++.-..++|..
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence 445678898876666 45566778877873211 111 1111100 01111 1122 446788888888899999
Q ss_pred EeccCCeeeeeccCCCCcceeEEEEcCC
Q 031924 107 VGILPNRIIQPIAEHSEYPIESLGIASV 134 (150)
Q Consensus 107 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 134 (150)
.|+.+++.+..+..... .+++++|--.
T Consensus 238 ~dp~tGK~L~eiklPt~-qitsccFgGk 264 (310)
T KOG4499|consen 238 VDPTTGKILLEIKLPTP-QITSCCFGGK 264 (310)
T ss_pred ECCCCCcEEEEEEcCCC-ceEEEEecCC
Confidence 99999999998876666 4999999643
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.001 Score=47.94 Aligned_cols=106 Identities=11% Similarity=0.132 Sum_probs=65.5
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEE-cccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYS-WGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~-~~~~~~~~~~~~~~ 79 (150)
+|-.+.+++.+|.....++++|++..... ...-.+..+..+...| .+.++++- .||.+-+|| .+......+.+..
T Consensus 161 cwlrd~klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~- 237 (783)
T KOG1008|consen 161 CWLRDTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILR- 237 (783)
T ss_pred ccccCcchhhcccccchhhhhhhhhhhhh-hhhhhhhhcccceecCCCCCceecc-ccCceeeccchhhhccHHHHHhh-
Confidence 55667788888888889999998754211 1112233566677777 56666555 599999999 4433344444432
Q ss_pred cc----cceeEee-ec-CCCEEEEec-CCCcEEEEecc
Q 031924 80 SP----NSVDALL-KL-DEDRVITGS-ENGLISLVGIL 110 (150)
Q Consensus 80 ~~----~~v~~~~-~~-~~~~l~~~~-~dg~i~~~d~~ 110 (150)
.+ ..+..+. .| ...++++.+ ..++|+++|+.
T Consensus 238 ~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 238 NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 22 2356665 33 333455544 45799999985
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.015 Score=39.84 Aligned_cols=62 Identities=11% Similarity=0.149 Sum_probs=44.2
Q ss_pred ecCcceEEEE---------cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc
Q 031924 4 AADAMKLLGT---------SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 4 ~~~~~~l~~~---------~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~ 67 (150)
|||+++++.. +..+.+.+||+++++.... ......+....|+|+|+.++-. .++.|.+++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l-~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL-TPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES-S-EETTBSEEEE-SSSTEEEEE-ETTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC-cCCccccccceeecCCCeeEEE-ecCceEEEECC
Confidence 6888887772 2346889999999855433 2225678899999999998877 45789998764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.15 Score=33.46 Aligned_cols=129 Identities=10% Similarity=0.050 Sum_probs=77.8
Q ss_pred ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc-cccceeE
Q 031924 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL-SPNSVDA 86 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-~~~~v~~ 86 (150)
+.....-.++...+||..+-+.+.++.-. ..=..++ .+++.|+..+....++.+|..+. +...++... ...++..
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---
T ss_pred EEEEEEecCCeEEEEccccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCccc-ceEEEEEEEECCEECCC
Confidence 34444557889999999988777666432 3334554 57888888877889999997544 333333210 2233333
Q ss_pred ---eeecCCCEEEEecCCCcEEEEeccCCeeeeecc------------CC---CCcceeEEEEcCCc-cEEEec
Q 031924 87 ---LLKLDEDRVITGSENGLISLVGILPNRIIQPIA------------EH---SEYPIESLGIASVL-CFINSG 141 (150)
Q Consensus 87 ---~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------------~~---~~~~i~~~~~~~~~-~~l~s~ 141 (150)
+-..+|...+-.-....|...|+.++++...+. .. .+ -.+.+|++|+. ++++||
T Consensus 177 LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~d-VLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 177 LNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDD-VLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS--EEEEEEETTTTEEEEEE
T ss_pred cEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCC-eeEeEeEeCCCCEEEEEe
Confidence 335577777777788888889999988766541 01 12 37899998855 566665
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.2 Score=34.78 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=35.1
Q ss_pred eeecCcceEEEEc-CC--CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc
Q 031924 2 TFAADAMKLLGTS-GD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 2 ~~~~~~~~l~~~~-~d--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 69 (150)
+|.+||+.|+-++ .+ ..+.+.|+++++..+.-.+.........++|+.+.++-...+..++-.|+.+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL 112 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcC
Confidence 4677886655544 34 45777788988765443332222224566788787755445567887888643
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.19 Score=33.88 Aligned_cols=136 Identities=11% Similarity=-0.042 Sum_probs=65.3
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-cc---cccccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DC---SDRFVG 78 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~---~~~~~~ 78 (150)
-++|+++++++.....+.-||.-...-...-.....++..|.|.|++...+.+ ..|.++.=+..... .. ...+..
T Consensus 152 r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~ 230 (302)
T PF14870_consen 152 RSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKT 230 (302)
T ss_dssp E-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS
T ss_pred ECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCccc
Confidence 35788888888766666778754322222223345789999999997765544 88888876621111 11 111111
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccC---CCCcceeEEEEcCCccEEEeccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAE---HSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
....+..+. .+++...+ ++..|.+ +.....++.-+.... -+. ....+.|.++.+-++.|..
T Consensus 231 -~~~~~ld~a~~~~~~~wa-~gg~G~l-~~S~DgGktW~~~~~~~~~~~-n~~~i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 231 -NGYGILDLAYRPPNEIWA-VGGSGTL-LVSTDGGKTWQKDRVGENVPS-NLYRIVFVNPDKGFVLGQD 295 (302)
T ss_dssp ---S-EEEEEESSSS-EEE-EESTT-E-EEESSTTSS-EE-GGGTTSSS----EEEEEETTEEEEE-ST
T ss_pred -CceeeEEEEecCCCCEEE-EeCCccE-EEeCCCCccceECccccCCCC-ceEEEEEcCCCceEEECCC
Confidence 223355566 44444555 4556654 344455665444432 122 3778888777666666543
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.077 Score=33.95 Aligned_cols=63 Identities=29% Similarity=0.310 Sum_probs=46.9
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeeeee-------ec-------cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTR-------SE-------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-------~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~ 67 (150)
...++++++...+|.+++||+.+++.+.. +. .....|..+.+..+|.-+++- .+|..+.|+..
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence 45678889999999999999999875421 11 244578888888888877765 45778888753
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.33 Score=35.64 Aligned_cols=133 Identities=8% Similarity=0.034 Sum_probs=66.4
Q ss_pred CcceEEEEcCCC-----eEEEEEcCCCeeee--eeccCCCcEEEEEEEeCCCEEEeecCCC-------------------
Q 031924 6 DAMKLLGTSGDG-----TLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQSG------------------- 59 (150)
Q Consensus 6 ~~~~l~~~~~d~-----~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~------------------- 59 (150)
+++..+.|+.++ .+..||..+.+-.. .+.........+ .-+|...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccc
Confidence 456666666543 47788987764321 111111111111 23566667777542
Q ss_pred ----eEEEEEccccc-ccccccccccccceeEeeecCCCEEEEecCCC------cEEEEeccC-Ce--eeeeccCCCCcc
Q 031924 60 ----TVLLYSWGYFK-DCSDRFVGLSPNSVDALLKLDEDRVITGSENG------LISLVGILP-NR--IIQPIAEHSEYP 125 (150)
Q Consensus 60 ----~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg------~i~~~d~~~-~~--~~~~~~~~~~~~ 125 (150)
.+..||..... .....+.. +..-.+++..++++.+.|+.++ .+..||+.+ .+ .+..++.... .
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-A 505 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-c
Confidence 46678865321 11222211 1111123355677777777542 467788876 33 2333322211 1
Q ss_pred eeEEEEcCCccEEEeccccc
Q 031924 126 IESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 126 i~~~~~~~~~~~l~s~~~~~ 145 (150)
...+ .-++++.+.|+.++
T Consensus 506 ~~~~--~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 506 LHTI--LHDNTIMMLHCYES 523 (557)
T ss_pred ceeE--EECCEEEEEeeecc
Confidence 2222 23788888888765
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.23 Score=33.57 Aligned_cols=134 Identities=13% Similarity=0.047 Sum_probs=64.8
Q ss_pred eeecCcceEEEE-cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc-cc-c-ccc
Q 031924 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CS-D-RFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~-~-~~~ 77 (150)
.|.++...|+-+ -..+.|.-|+..+++... +. ..+.+.+...-..+..|+++... +.+++.+..+. .. . ...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEHG--VRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEccc--cEEEeccCCceeEEeccccC
Confidence 366666644444 467888888887664332 22 22233444443344445544333 33445422222 11 1 111
Q ss_pred cccccceeEe-eecCCCEEEEecC-----------CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 78 GLSPNSVDAL-LKLDEDRVITGSE-----------NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~-----------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
+......+.. ..++|.+.+.... -|.++.+|. .+...+.+..+-. --+.++||||++.+...
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~-~~NGla~SpDg~tly~a 180 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT-IPNGLAFSPDGKTLYVA 180 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE-ecCceEECCCCCEEEEE
Confidence 1011222222 2666766655443 123444444 3555555544434 36789999999765543
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.2 Score=32.78 Aligned_cols=107 Identities=11% Similarity=0.039 Sum_probs=56.8
Q ss_pred eeccCCCcEEEEEEEeCCC-EEEeecCCCeEEEEEcccccccccccccccccceeEeeec-CCCEEEEecCCCcEEEEec
Q 031924 32 RSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKL-DEDRVITGSENGLISLVGI 109 (150)
Q Consensus 32 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~~~d~ 109 (150)
.+.+-...+..+.|+|+.+ .+++....+.|.-++.. ++.+.+++-....-...+... ++.++++.-.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 4455566799999999755 55667777888777763 677776653112234455533 4555555545889999887
Q ss_pred cCCe------eeeecc--C--CCCcceeEEEEcCCccEEEe
Q 031924 110 LPNR------IIQPIA--E--HSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 110 ~~~~------~~~~~~--~--~~~~~i~~~~~~~~~~~l~s 140 (150)
.... ..+.+. . .....+..++|+|.++.|..
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v 134 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV 134 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE
Confidence 3211 112121 1 12235899999997654443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.041 Score=25.36 Aligned_cols=30 Identities=7% Similarity=0.055 Sum_probs=24.6
Q ss_pred CcEEEEEEEeCC---CEEEeecCCCeEEEEEcc
Q 031924 38 EELTSVVLMKNG---RKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 38 ~~v~~~~~~~~~---~~l~~~~~d~~i~i~~~~ 67 (150)
+.+.++.|+|+. ..|+-.-..+.+.++|++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 368899999853 477777778999999997
|
It contains a characteristic DLL sequence motif. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.011 Score=44.64 Aligned_cols=108 Identities=13% Similarity=0.111 Sum_probs=61.9
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEE-----------EEEEEeCCCEEEeecCCCeEEEEEcccccc---
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELT-----------SVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--- 71 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~-----------~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--- 71 (150)
+.-++..+-.++.+++....+-.. ..+..|...+. --..+|||+.|+..+.||.++.|.+.-.++
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~ 272 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVH 272 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccH
Confidence 556677777888888877654321 11122322222 223689999999999999999998754443
Q ss_pred -ccccccccccccee-EeeecCC----------CEEEEecC-CCcEEEEeccCCeee
Q 031924 72 -CSDRFVGLSPNSVD-ALLKLDE----------DRVITGSE-NGLISLVGILPNRII 115 (150)
Q Consensus 72 -~~~~~~~~~~~~v~-~~~~~~~----------~~l~~~~~-dg~i~~~d~~~~~~~ 115 (150)
+....+. |...-. |....+. .++++++. +..+++|.....+++
T Consensus 273 rclhewkp-hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 273 RCLHEWKP-HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred hhhhccCC-CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 4444455 553222 2212211 24455443 457888876655554
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.38 Score=33.92 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=53.9
Q ss_pred ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-e-c-CC---------------C-E
Q 031924 34 EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-K-L-DE---------------D-R 94 (150)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~-~-~~---------------~-~ 94 (150)
......+.++..+|++++.++.+.=|.|.++|+. .+..++.++|.....+.-+. . . +. . +
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~-~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVA-RGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECC-CChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3334467889999999988888777999999985 45667777762222222111 1 1 10 1 3
Q ss_pred EEEecCCCcEEEEeccCCeeeeec
Q 031924 95 VITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 95 l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
++-+-..|.|.+|+++.+..+..+
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEE
Confidence 344556788888888877665544
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.47 Score=34.91 Aligned_cols=93 Identities=15% Similarity=0.079 Sum_probs=44.7
Q ss_pred CcceEEEEcCC------CeEEEEEcCCCeeeeeeccCC-CcEEEEEEEeCCCEEEeecCCC-----eEEEEEccccc-cc
Q 031924 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFK-DC 72 (150)
Q Consensus 6 ~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~~-~~ 72 (150)
+++..+.|+.+ ..+..||..+++-.. +.... ..-......-+|+..+.|+.++ ++..||..... ..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~-~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVE-LPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEee-CCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 44555556532 347778877764321 11111 1111122233577777787653 47788875321 11
Q ss_pred ccccccccccceeEeeecCCCEEEEecCC
Q 031924 73 SDRFVGLSPNSVDALLKLDEDRVITGSEN 101 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~d 101 (150)
...++. +..-.+....++.+.+.|+.+
T Consensus 382 ~~~mp~--~r~~~~~~~~~g~IYviGG~~ 408 (557)
T PHA02713 382 LPDMPI--ALSSYGMCVLDQYIYIIGGRT 408 (557)
T ss_pred CCCCCc--ccccccEEEECCEEEEEeCCC
Confidence 122221 111112335577788888765
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.058 Score=24.30 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=23.8
Q ss_pred cCcceEEEEc-CCCeEEEEEcCCCeeeeeecc
Q 031924 5 ADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEF 35 (150)
Q Consensus 5 ~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~ 35 (150)
|+++.|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5777676655 688999999988877766654
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.54 Score=34.97 Aligned_cols=107 Identities=12% Similarity=0.023 Sum_probs=66.0
Q ss_pred cEEEEEEEeCCCEEEeecCCCeEEEEEccccc-ccccccccccccceeEee---ecCCCEEEEecCCCcEEEEec-c---
Q 031924 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRFVGLSPNSVDALL---KLDEDRVITGSENGLISLVGI-L--- 110 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~---~~~~~~l~~~~~dg~i~~~d~-~--- 110 (150)
...-+.-+.-++..++-+....+.|||.+... +..+.| . ..+.|..+. .++++.+++.+-.+.|.++.- +
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~-~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-S-EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-c-CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 34444444545555555556689999986332 122233 2 356677665 568888888888888888842 1
Q ss_pred -C----Ceeeeec--cCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 111 -P----NRIIQPI--AEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 111 -~----~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
. ...++.+ ..+..-+|.+..|.++|.+++.++....|
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv 152 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFV 152 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEE
Confidence 1 1123322 23333378999999999998877765443
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.32 Score=31.99 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=62.8
Q ss_pred eecCcceEEEEcCCC--eEEEEEcCCCeeeeeeccC-CCcEEEEEEEeCCCEEEeec-CCCeEEEEEccccccccccccc
Q 031924 3 FAADAMKLLGTSGDG--TLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
|..++.++-+.+.-| .|+.+|+++++......-. ...-..+... +..+.--+ .++...+||..+. +.+.++.-
T Consensus 52 ~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl-~~~~~~~y 128 (264)
T PF05096_consen 52 FLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTL-KKIGTFPY 128 (264)
T ss_dssp EEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTT-EEEEEEE-
T ss_pred ecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccc-eEEEEEec
Confidence 445666667776544 7899999999876554432 2333444444 33443333 6789999998644 44555542
Q ss_pred ccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeec
Q 031924 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
..+++ .++ .++..|+.......++++|..+.+..+.+
T Consensus 129 ~~EGW--GLt-~dg~~Li~SDGS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 129 PGEGW--GLT-SDGKRLIMSDGSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp SSS----EEE-ECSSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred CCcce--EEE-cCCCEEEEECCccceEEECCcccceEEEE
Confidence 11222 233 45666766666789999998776555544
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.003 Score=44.41 Aligned_cols=134 Identities=12% Similarity=0.155 Sum_probs=88.3
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
.|-|++.-++.++.+..+..||-... ..-.. ...+....++|..++..++ .+-..+.+.+||+.. +-.+++.. .
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~agq-~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~--eytqqLE~-g 115 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKAGQ-VILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS--EYTQQLES-G 115 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhhcc-eeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhh--hhHHHHhc-c
Confidence 46677777888888888888986543 22222 2345567888888877664 455678999999852 22222221 1
Q ss_pred ccceeEee--ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 81 PNSVDALL--KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 81 ~~~v~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
...-.++. ++....++.+...|.+.+++..+.+.+-....|.. .+.++++.+.+..+..+
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~R-Rgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQR-RGTQIAVTLEDYVILCD 177 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccccc-ceeEEEecccceeeecC
Confidence 11122222 55666777788889999999887776666655766 58899999887665443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.45 Score=32.10 Aligned_cols=108 Identities=13% Similarity=0.065 Sum_probs=56.6
Q ss_pred ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEec-cC
Q 031924 34 EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGI-LP 111 (150)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~-~~ 111 (150)
....+.+..+.-+++|++++++..-....-||.... .....-.. ....+..+. .+++.+.+.+ ..|.+++=+. ..
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~-~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRN-SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD 217 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc-cceEEccC-ccceehhceecCCCCEEEEe-CCcEEEEccCCCC
Confidence 344567888888999999988877767777875321 11111122 346677776 6777766654 7888888772 22
Q ss_pred Ceeeee--ccC-CCCcceeEEEEcCCccEEEecccc
Q 031924 112 NRIIQP--IAE-HSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 112 ~~~~~~--~~~-~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
.+.... ... ..++.+..++|.+++...|+|+..
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 222221 111 223458899999999888877654
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.35 Score=31.01 Aligned_cols=64 Identities=16% Similarity=0.063 Sum_probs=41.5
Q ss_pred EEeCCCEEEeecCCCeEEEEEcccccccccc------cc-------cccccceeEee-ecCCCEEEEecCCCcEEEEecc
Q 031924 45 LMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR------FV-------GLSPNSVDALL-KLDEDRVITGSENGLISLVGIL 110 (150)
Q Consensus 45 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~------~~-------~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~ 110 (150)
+..++.++++-+.+|.+++||+......... +. . ....|..+. ..+|.-+++- .+|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~-~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKS-SSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCC-CCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence 4567899999999999999999754222221 11 1 234455444 6667666654 46788888764
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.53 Score=33.06 Aligned_cols=103 Identities=11% Similarity=-0.027 Sum_probs=55.2
Q ss_pred EEEEEEEeCCCEEEee-cCC----CeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCC-----------
Q 031924 40 LTSVVLMKNGRKVVCG-SQS----GTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENG----------- 102 (150)
Q Consensus 40 v~~~~~~~~~~~l~~~-~~d----~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg----------- 102 (150)
+....++|+|++++.+ +.. ..++++|+.+.......+.. .. ...+. .++++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 3467888999988744 333 36999999644222223332 11 12233 66766655444222
Q ss_pred cEEEEeccCCee--eeeccCCCCcc-eeEEEEcCCccEEEeccccc
Q 031924 103 LISLVGILPNRI--IQPIAEHSEYP-IESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 103 ~i~~~d~~~~~~--~~~~~~~~~~~-i~~~~~~~~~~~l~s~~~~~ 145 (150)
.|+.|.+.+... .-.+......- ...+..++|+++++..+.+.
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~ 248 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG 248 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc
Confidence 367777765432 12332222211 45788899999987655443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.9 Score=34.82 Aligned_cols=109 Identities=8% Similarity=0.078 Sum_probs=67.9
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCc--------EEEEEEE----------------eCCCEEEeecCCCeEE
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE--------LTSVVLM----------------KNGRKVVCGSQSGTVL 62 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~~~l~~~~~d~~i~ 62 (150)
+..++.++.++.|.-.|.++|+.+.+....... .+.+.+- ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457777888899999999999887665432211 1223332 1245788898999999
Q ss_pred EEEcccccccccccccccccce-------------eEee-ec--CCCEEEEecC----------CCcEEEEeccCCeeee
Q 031924 63 LYSWGYFKDCSDRFVGLSPNSV-------------DALL-KL--DEDRVITGSE----------NGLISLVGILPNRIIQ 116 (150)
Q Consensus 63 i~~~~~~~~~~~~~~~~~~~~v-------------~~~~-~~--~~~~l~~~~~----------dg~i~~~d~~~~~~~~ 116 (150)
-.|.+ .++....+.. ...+ .... .| .+..++.|+. +|.|+-+|.++++.+.
T Consensus 274 ALDA~-TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDAD-TGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECC-CCCEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 99975 4455443321 1111 0111 11 2446666643 6889999999999877
Q ss_pred ec
Q 031924 117 PI 118 (150)
Q Consensus 117 ~~ 118 (150)
.+
T Consensus 351 ~~ 352 (764)
T TIGR03074 351 AW 352 (764)
T ss_pred EE
Confidence 65
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.094 Score=37.13 Aligned_cols=136 Identities=16% Similarity=0.171 Sum_probs=79.3
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeee-eee-ccCCC----cEE-EEEEEeCCCEEEeecCCCeEEEE-Eccccccc--
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ-TRS-EFSEE----ELT-SVVLMKNGRKVVCGSQSGTVLLY-SWGYFKDC-- 72 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~-~~~~~----~v~-~~~~~~~~~~l~~~~~d~~i~i~-~~~~~~~~-- 72 (150)
..||++.++.-++ .++.++++.+.... .++ ....+ .|+ .+..-..|.-+.+++.||-+.=| |.+..+..
T Consensus 228 L~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l 306 (733)
T COG4590 228 LTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHL 306 (733)
T ss_pred ECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcc
Confidence 4689998888766 68999988765432 111 11111 122 11122346668888899888765 65533321
Q ss_pred --ccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 73 --SDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 73 --~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
++.++- .+..+..+. ..+.+-+++-+.+|++..+.....+.+-.-... + .+.-+++||.+.++++-.
T Consensus 307 ~h~R~f~l-~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~-~-~~~~~~~Sp~~~~Ll~e~ 376 (733)
T COG4590 307 NHIRNFKL-APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY-Q-APQLVAMSPNQAYLLSED 376 (733)
T ss_pred eeeecccc-CcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh-c-CcceeeeCcccchheeec
Confidence 122222 334455555 335567788888999988866444432221122 2 367789999998887643
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.63 Score=32.70 Aligned_cols=62 Identities=26% Similarity=0.240 Sum_probs=44.1
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeee--ecc------CCCcEEEEEEEe-----CC---CEEEeecCCCeEEEEEcc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTR--SEF------SEEELTSVVLMK-----NG---RKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~------~~~~v~~~~~~~-----~~---~~l~~~~~d~~i~i~~~~ 67 (150)
|=-+++.|..+|.+.|.|++....+.. +.. ....++++.|.. |+ -.+++|+..|.+.+|.+-
T Consensus 96 ~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 96 DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence 334889999999999999987766543 112 234688888873 22 468899999999999773
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.66 Score=32.90 Aligned_cols=95 Identities=14% Similarity=0.110 Sum_probs=46.2
Q ss_pred CCeEEEEEcCCCeeeeeeccCCC--cEEEEEEEeC--CCE-EEeecCCCeEEEEEcccccc----ccccc----------
Q 031924 16 DGTLSVCNLRKNTVQTRSEFSEE--ELTSVVLMKN--GRK-VVCGSQSGTVLLYSWGYFKD----CSDRF---------- 76 (150)
Q Consensus 16 d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~--~~~-l~~~~~d~~i~i~~~~~~~~----~~~~~---------- 76 (150)
..++.+||+.+.+.++.+.--++ ....+.|..+ ..+ |+.+-...+|..|--...+. .+-.+
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 46899999999998887764332 3567777644 333 33333445555553211111 11111
Q ss_pred -------ccccccceeEee-ecCCCEEEEe-cCCCcEEEEeccC
Q 031924 77 -------VGLSPNSVDALL-KLDEDRVITG-SENGLISLVGILP 111 (150)
Q Consensus 77 -------~~~~~~~v~~~~-~~~~~~l~~~-~~dg~i~~~d~~~ 111 (150)
.. -+.-++.+. +.+.++|..+ -..|.++.||+..
T Consensus 301 p~ml~~~~~-~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 301 PEMLKPFGA-VPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp -GGGGGG-E-E------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ccccccccc-CCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 11 133456666 8888877554 5689999999964
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.29 Score=28.70 Aligned_cols=110 Identities=20% Similarity=0.176 Sum_probs=66.5
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCe--------eeeeeccCCCcEEEEEEEe-----CCCEEEeecCCCeEEEEEcccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~~~~~~ 69 (150)
|+.....|++++..++|.|++..... .+..+ .-...|++++-.+ +...|+.|+. ..+..||+...
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence 55566788899899999999876532 12222 2344566665554 2456777755 47889999754
Q ss_pred cccccccccccccceeEee--ec---CCCEEEEecCCCcEEEEeccCCeeeeec
Q 031924 70 KDCSDRFVGLSPNSVDALL--KL---DEDRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~~--~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
.....+ . -++.+.++. .. +..+++ .+.+..|.-+|....+...+.
T Consensus 84 ~d~Fyk--e-~~DGvn~i~~g~~~~~~~~l~i-vGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 84 SDLFYK--E-VPDGVNAIVIGKLGDIPSPLVI-VGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred chhhhh--h-CccceeEEEEEecCCCCCcEEE-ECceEEEEEeCCCCcEEEEEe
Confidence 333322 2 345566554 22 334444 455778888888666655544
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.12 Score=33.34 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=39.6
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK 47 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 47 (150)
+.+.+|++.+++-..++|...|..+|+.+..++-....+++++|--
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 4556778888888889999999999999998888899999999963
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.88 Score=33.31 Aligned_cols=109 Identities=11% Similarity=0.062 Sum_probs=64.4
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCC-CcEE---E-------EEEEeCCCEEEeecCCCeEEEEEcccccccccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELT---S-------VVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~---~-------~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
+..++.++.++.|.-+|.++|+.+.+..... ..+. + +++ .+..++.++.|+.+..+|.+ .++.+-+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~-TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAK-TGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECC-CCCEEee
Confidence 4567777788899999999998876654321 1111 1 122 24567788899999999975 4555433
Q ss_pred cccc-ccc--ceeEeeecCCCEEEEecC------CCcEEEEeccCCeeeeec
Q 031924 76 FVGL-SPN--SVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPI 118 (150)
Q Consensus 76 ~~~~-~~~--~v~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~ 118 (150)
.... +.. .+.+.--..+..++.+.. +|.|+.+|.++++.+..+
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 3210 111 111100012334555432 688999999998877654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.39 Score=33.86 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=53.0
Q ss_pred CeeecCcceEEEEcCCCeEEE---EEcCC-C----eee----eeeccCC-CcEEEEEEEe-----------CCCEEEeec
Q 031924 1 MTFAADAMKLLGTSGDGTLSV---CNLRK-N----TVQ----TRSEFSE-EELTSVVLMK-----------NGRKVVCGS 56 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i---~d~~~-~----~~~----~~~~~~~-~~v~~~~~~~-----------~~~~l~~~~ 56 (150)
+..+|++..|+.+.++..+.+ |+... + ... ..+.... +.|+++.+-| |...+++|.
T Consensus 7 isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ 86 (415)
T PF14655_consen 7 ISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT 86 (415)
T ss_pred EEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe
Confidence 356899999999977766554 53311 1 111 1122222 4677776654 357789999
Q ss_pred CCCeEEEEEcccccccccccccccccceeEee
Q 031924 57 QSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL 88 (150)
Q Consensus 57 ~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~ 88 (150)
.+|.+++|... +..+..-.- |+.+|..+.
T Consensus 87 ssG~vrfyte~--G~LL~~Q~~-h~~pV~~ik 115 (415)
T PF14655_consen 87 SSGYVRFYTEN--GVLLLSQLL-HEEPVLKIK 115 (415)
T ss_pred cccEEEEEecc--chHHHHHhc-CccceEEEE
Confidence 99999999853 444443334 677777654
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.05 Score=41.45 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=62.1
Q ss_pred CeEEEEEcCC--Ceeee-----eeccCCCcEEEEEE---EeCCCEEEeecCCCeEEEEEccccccccccccccccccee-
Q 031924 17 GTLSVCNLRK--NTVQT-----RSEFSEEELTSVVL---MKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD- 85 (150)
Q Consensus 17 ~~i~i~d~~~--~~~~~-----~~~~~~~~v~~~~~---~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~- 85 (150)
|.+.+||+.. |+... .......++.-+.| .++.-++-.+..++.+++..+.. .....|.+ |..++.
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~r--a~~~l~rs-Hs~~~~d 229 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINR--ALRSLFRS-HSQRVTD 229 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeech--HHHHHHHh-cCCCccc
Confidence 5678888754 43321 22222233344444 45666777777888999877642 22233444 544333
Q ss_pred ---------Ee--eecCCCEEEEecCCCcEEEEecc-CC----eeeeeccCCCC
Q 031924 86 ---------AL--LKLDEDRVITGSENGLISLVGIL-PN----RIIQPIAEHSE 123 (150)
Q Consensus 86 ---------~~--~~~~~~~l~~~~~dg~i~~~d~~-~~----~~~~~~~~~~~ 123 (150)
.+ .++||..++.++.||.+++|.+. ++ +++...+.|.+
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence 12 28899999999999999999763 22 35555666653
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.1 Score=33.45 Aligned_cols=56 Identities=14% Similarity=0.279 Sum_probs=41.7
Q ss_pred EEEcCCCeEEEEEcCCCeeeeeec-cCCCcEEEEEEE--eCCCEEEeecCCCeEEEEEc
Q 031924 11 LGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLM--KNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 11 ~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~~~ 66 (150)
++-+...++.|||...+....... ...+.|.++.|. |+++.+.+.+..+.|.+|.-
T Consensus 45 ~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 45 VVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 334456689999998886443222 446789999996 57899988889999999864
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.63 Score=30.53 Aligned_cols=140 Identities=14% Similarity=0.042 Sum_probs=78.9
Q ss_pred eeecCcceEEEEc---CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc-cccccc
Q 031924 2 TFAADAMKLLGTS---GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~ 77 (150)
+++++++.++... ....+.++... ....... ....+....|++++...+....+...+++.....+. ......
T Consensus 30 AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~ 106 (253)
T PF10647_consen 30 AVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVD 106 (253)
T ss_pred EECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEec
Confidence 5788888777655 33445555433 2222221 223778889999977766666666666663111111 111111
Q ss_pred cc-cccceeEee-ecCCCEEEEec---CCCcEEEEecc---CC--e----eeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 78 GL-SPNSVDALL-KLDEDRVITGS---ENGLISLVGIL---PN--R----IIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 78 ~~-~~~~v~~~~-~~~~~~l~~~~---~dg~i~~~d~~---~~--~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
.. ....|..+. +++|..++.-. .++.|.+--+. .+ . .......... .+..+.|.+++.+++.+..
T Consensus 107 ~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~-~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 107 WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS-DVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC-cceeeeecCCCEEEEEeCC
Confidence 10 112788887 99998776554 35677766543 22 1 1111112123 5899999999998876655
Q ss_pred cc
Q 031924 144 SL 145 (150)
Q Consensus 144 ~~ 145 (150)
..
T Consensus 186 ~~ 187 (253)
T PF10647_consen 186 AG 187 (253)
T ss_pred CC
Confidence 43
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.77 Score=31.45 Aligned_cols=109 Identities=8% Similarity=0.073 Sum_probs=64.3
Q ss_pred eeecCcceEEEE----------cCCCeEEEEEcCCCeeeeeeccCCC-------cEEEEEEEeCCCEEEee--cCCCeEE
Q 031924 2 TFAADAMKLLGT----------SGDGTLSVCNLRKNTVQTRSEFSEE-------ELTSVVLMKNGRKVVCG--SQSGTVL 62 (150)
Q Consensus 2 ~~~~~~~~l~~~----------~~d~~i~i~d~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~--~~d~~i~ 62 (150)
..+|+++.++++ -....|.+||.++-.....+.-... ....++++.|++++++. +...+|.
T Consensus 42 ~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVt 121 (342)
T PF06433_consen 42 ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVT 121 (342)
T ss_dssp EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEE
T ss_pred eECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEE
Confidence 468888888763 3345789999998766544332211 22345667778777654 3456777
Q ss_pred EEEcccccccccccccccccceeEeeecCCCEEEEecCCCcEEEEecc-CCee
Q 031924 63 LYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGIL-PNRI 114 (150)
Q Consensus 63 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~ 114 (150)
+.|+. .++....+.. + .+..+....++-+.+-|.||.+.-..+. .++.
T Consensus 122 VVDl~-~~kvv~ei~~--P-GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 122 VVDLA-AKKVVGEIDT--P-GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp EEETT-TTEEEEEEEG--T-SEEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred EEECC-CCceeeeecC--C-CEEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 88875 3355555432 1 1222322233568888899999988886 3443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.47 Score=35.99 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=46.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC----------Cee--eee--------e-ccCCCcEEEEEEEeC---CCEEEeec
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK----------NTV--QTR--------S-EFSEEELTSVVLMKN---GRKVVCGS 56 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~----------~~~--~~~--------~-~~~~~~v~~~~~~~~---~~~l~~~~ 56 (150)
|.++|+|++++..+..+ |.|..+.. ++. ..+ + ......|..+.|+|. +..|++-+
T Consensus 90 i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLt 168 (717)
T PF10168_consen 90 ISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLT 168 (717)
T ss_pred EEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEe
Confidence 35689999999887754 55544432 111 111 0 122347899999996 58899999
Q ss_pred CCCeEEEEEccc
Q 031924 57 QSGTVLLYSWGY 68 (150)
Q Consensus 57 ~d~~i~i~~~~~ 68 (150)
.|+++++||+..
T Consensus 169 sdn~lR~y~~~~ 180 (717)
T PF10168_consen 169 SDNTLRLYDISD 180 (717)
T ss_pred cCCEEEEEecCC
Confidence 999999999864
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=1.1 Score=32.80 Aligned_cols=134 Identities=11% Similarity=-0.064 Sum_probs=61.8
Q ss_pred CcceEEEEcCC-----CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC------CeEEEEEccccc-ccc
Q 031924 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFK-DCS 73 (150)
Q Consensus 6 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~-~~~ 73 (150)
+++.++.|+.+ ..+..||..+++-...-.-...........-+++..+.|+.+ ..+..||..+.. ...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 45556666544 346678877654321111111111111122356666777632 457888875321 111
Q ss_pred cccccccccceeEeeecCCCEEEEecCCC--------cEEEEeccCCee--eeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 74 DRFVGLSPNSVDALLKLDEDRVITGSENG--------LISLVGILPNRI--IQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 74 ~~~~~~~~~~v~~~~~~~~~~l~~~~~dg--------~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
..++. .. .-.+....++..++.|+.+. .+..||+.+++- +..+..... ....+. .++++++.|+.
T Consensus 422 ~~~p~-~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~-~~~~~~--~~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPI-SH-YGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRI-NASLCI--FNNKIYVVGGD 496 (534)
T ss_pred CCCCc-cc-cCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccc-cceEEE--ECCEEEEEcCC
Confidence 22221 11 11123345667777776432 378888876542 222211111 111222 36777777775
Q ss_pred c
Q 031924 144 S 144 (150)
Q Consensus 144 ~ 144 (150)
.
T Consensus 497 ~ 497 (534)
T PHA03098 497 K 497 (534)
T ss_pred c
Confidence 4
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.67 Score=32.74 Aligned_cols=49 Identities=8% Similarity=0.182 Sum_probs=36.1
Q ss_pred eEEEEEcccccccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccC
Q 031924 60 TVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILP 111 (150)
Q Consensus 60 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~ 111 (150)
.|++|+.. |+.+.++.- ..+.+..+...+...|+.-..||.++++|+..
T Consensus 62 ~I~iys~s--G~ll~~i~w-~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSSS--GKLLSSIPW-DSGRIVGMGWTDDEELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECCC--CCEeEEEEE-CCCCEEEEEECCCCeEEEEEcCCEEEEEeCCC
Confidence 58899864 677777765 44677777755566677778999999999863
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.64 Score=34.14 Aligned_cols=107 Identities=10% Similarity=0.034 Sum_probs=61.4
Q ss_pred CeeecC----cceEEEEcCCCeEEEEEcCC-----CeeeeeeccC-----CCcEEEEEEEeCCCEEEeecCCCeEEEEEc
Q 031924 1 MTFAAD----AMKLLGTSGDGTLSVCNLRK-----NTVQTRSEFS-----EEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 1 i~~~~~----~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~ 66 (150)
+.|.|- ...+++.-..++|.+|.+.. ++.+..-..+ .--...+.|+|....|++-.....-.++++
T Consensus 62 lsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV 141 (671)
T PF15390_consen 62 LSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSV 141 (671)
T ss_pred eeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeee
Confidence 357663 33455555777999999863 2222111111 112347889999888877665555455666
Q ss_pred ccccc-cccccccccccceeEee-ecCCCEEEEecC-CCcEEEEec
Q 031924 67 GYFKD-CSDRFVGLSPNSVDALL-KLDEDRVITGSE-NGLISLVGI 109 (150)
Q Consensus 67 ~~~~~-~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~-dg~i~~~d~ 109 (150)
+.... ...-++ ..+.|.|.+ ..+|+.|+.+-. .=.-++||-
T Consensus 142 ~~d~srVkaDi~--~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 142 HCDSSRVKADIK--TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eeCCceEEEecc--CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 54332 223333 356677766 668876655433 335678875
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.22 Score=33.20 Aligned_cols=55 Identities=25% Similarity=0.351 Sum_probs=41.2
Q ss_pred eeecCcceEEEEcCC-----CeEEEEEcCCC-eeeeeeccCCCcEEEEEEEeCCCEEEeec
Q 031924 2 TFAADAMKLLGTSGD-----GTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGS 56 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d-----~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 56 (150)
.|||||++|+..-+| |.|-+||...+ +.+..+..|.-....+.+.+||+.++.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 489999999987543 78999998753 23445556655678899999999987764
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.4 Score=32.62 Aligned_cols=133 Identities=12% Similarity=0.037 Sum_probs=67.8
Q ss_pred CcceEEEEcCC------CeEEEEEcCCCeeeeeeccCCCcEEEEEE-EeCCCEEEeecCCCe-----EEEEEcccccccc
Q 031924 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSEEELTSVVL-MKNGRKVVCGSQSGT-----VLLYSWGYFKDCS 73 (150)
Q Consensus 6 ~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~-----i~i~~~~~~~~~~ 73 (150)
++...++|+.| .++..||..+++-.. .......-..... .-+|...++|+.||. +..||.... +..
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~-~W~ 409 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN-KWT 409 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCC-ccc
Confidence 45566777777 456678887765332 1111111111111 225777788988864 666775422 211
Q ss_pred ccccccccccee--EeeecCCCEEEEecCCC------cEEEEeccCCe--eeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 74 DRFVGLSPNSVD--ALLKLDEDRVITGSENG------LISLVGILPNR--IIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 74 ~~~~~~~~~~v~--~~~~~~~~~l~~~~~dg------~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
..-+ ...... ..+..+|.+.++|+.++ .+..||..+++ .+..+..... -..++ .-++.+.+.||.
T Consensus 410 ~va~--m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~--~~g~a-~~~~~iYvvGG~ 484 (571)
T KOG4441|consen 410 PVAP--MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS--GFGVA-VLNGKIYVVGGF 484 (571)
T ss_pred ccCC--CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc--cceEE-EECCEEEEECCc
Confidence 1111 111222 23366888889988665 46678877654 2222221111 11122 345667777776
Q ss_pred cc
Q 031924 144 SL 145 (150)
Q Consensus 144 ~~ 145 (150)
++
T Consensus 485 ~~ 486 (571)
T KOG4441|consen 485 DG 486 (571)
T ss_pred cC
Confidence 65
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.98 Score=30.30 Aligned_cols=110 Identities=9% Similarity=0.165 Sum_probs=70.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccC-CCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccc----c
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD----R 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~----~ 75 (150)
+.|+|+.+.|++......--++=...|+.+.++.-. -.....+.+..+|++.++--.++.+.++.+......+. .
T Consensus 91 LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~ 170 (316)
T COG3204 91 LTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQK 170 (316)
T ss_pred eeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceE
Confidence 579999998888877666666666667777665421 33456788888888888888889999887753321111 1
Q ss_pred cc----cccccceeEee-ecCCCEEEEecCCCcEEEEecc
Q 031924 76 FV----GLSPNSVDALL-KLDEDRVITGSENGLISLVGIL 110 (150)
Q Consensus 76 ~~----~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~ 110 (150)
++ .........++ .+.+..++.+-+..-+.++...
T Consensus 171 i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 171 IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 11 10133344555 6666667666676766766553
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.4 Score=35.05 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=23.9
Q ss_pred CCCEEEEecCCCcEEEEeccCCeeeeec
Q 031924 91 DEDRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 91 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
+..++++-+.|+.+|+||+.+++++...
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 6678999999999999999998885543
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.96 Score=29.69 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=54.6
Q ss_pred cEEEEEEEeCCCEEEeec---CCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEe-ccCCe
Q 031924 39 ELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVG-ILPNR 113 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~---~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d-~~~~~ 113 (150)
.+...+++++++.++... ....++++... +.......+ . .+..-. .+++........+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g-~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG-G--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC-C--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999998876654 23345554432 222222232 2 233322 55666666666666666663 22332
Q ss_pred --eeeec-cCCCCcceeEEEEcCCccEEEecc
Q 031924 114 --IIQPI-AEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 114 --~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
....- ..... +|..+++||||..+|.-.
T Consensus 100 ~~~~~v~~~~~~~-~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 100 GEPVEVDWPGLRG-RITALRVSPDGTRVAVVV 130 (253)
T ss_pred ceeEEecccccCC-ceEEEEECCCCcEEEEEE
Confidence 21111 11112 599999999998877433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.89 Score=29.05 Aligned_cols=53 Identities=11% Similarity=0.104 Sum_probs=33.3
Q ss_pred ecCCCEEEEecCCCcEEEEeccCCeeeeecc------------CCCCcceeEEEEcCCc-cEEEecc
Q 031924 89 KLDEDRVITGSENGLISLVGILPNRIIQPIA------------EHSEYPIESLGIASVL-CFINSGF 142 (150)
Q Consensus 89 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------------~~~~~~i~~~~~~~~~-~~l~s~~ 142 (150)
..+|...+-.-.+..|...|+.+++....+. .+.+ -.+.+++.|++ +++++|=
T Consensus 183 ~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~n-vlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 183 WVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDN-VLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred eeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccc-cccceeecCcCCeEEEecC
Confidence 4466666666666666666777776555431 2222 37788999977 7777763
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=93.86 E-value=1.5 Score=30.62 Aligned_cols=118 Identities=11% Similarity=0.026 Sum_probs=51.6
Q ss_pred EEcCCCeeeeeeccCCCcEE-----EEEEEeCCCEE-EeecCCCeEEEEEccccccccccccc-ccccceeEeeecCCCE
Q 031924 22 CNLRKNTVQTRSEFSEEELT-----SVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNSVDALLKLDEDR 94 (150)
Q Consensus 22 ~d~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 94 (150)
-|..+|..+.++......-. .=+|.++|+.| +.+..||.-.+|-+.-....+.+++. ........+.+++++.
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~ 94 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA 94 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe
Confidence 46667766666654443222 33567788665 45555665555543322333334432 0122223445677777
Q ss_pred EEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEE--cCCccEEEe
Q 031924 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGI--ASVLCFINS 140 (150)
Q Consensus 95 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~s 140 (150)
++-......++-.|+.+.+....+.....+ .....| +.|+..++.
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~-~g~gt~v~n~d~t~~~g 141 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDW-KGYGTWVANSDCTKLVG 141 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEEE--TTE-EEEEEEEE-TTSSEEEE
T ss_pred EEEEECCCeEEEEECCcCcEEEEEECCccc-ccccceeeCCCccEEEE
Confidence 765555568888999887755555444443 433444 456766553
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.9 Score=31.52 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=50.0
Q ss_pred cceEEEEcCC------CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC-----CeEEEEEccccc-cccc
Q 031924 7 AMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFK-DCSD 74 (150)
Q Consensus 7 ~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~-~~~~ 74 (150)
+..++.|+.+ ..+..||..+++....-.-...........-++...+.|+.+ ..+..||..... ....
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 4455555433 246778877765422111111111111222356677777765 346677765321 1111
Q ss_pred ccccccccceeEeeecCCCEEEEecCC------CcEEEEeccCCe
Q 031924 75 RFVGLSPNSVDALLKLDEDRVITGSEN------GLISLVGILPNR 113 (150)
Q Consensus 75 ~~~~~~~~~v~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~ 113 (150)
.++. +..-.+....+++.++.|+.+ ..+..||+.+++
T Consensus 375 ~lp~--~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 375 PLIF--PRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CcCc--CCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 1111 111112234567777777732 357888887654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.64 E-value=2.4 Score=32.20 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=23.4
Q ss_pred eeecCCCEEEEecCCCcEEEEeccCCeeeeec
Q 031924 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 87 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
..+++.++|+-=...|.+.+.+.+..+.+..+
T Consensus 223 ~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~ 254 (829)
T KOG2280|consen 223 SVSPNRRFLALYTETGKIWVVSIDLSQILCEF 254 (829)
T ss_pred EEcCCcceEEEEecCCcEEEEecchhhhhhcc
Confidence 33778888888888899988877666554444
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.55 E-value=2.2 Score=31.53 Aligned_cols=65 Identities=8% Similarity=0.057 Sum_probs=42.3
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCe-eeeeeccCCCcEEEEEEEeCCCEEEeecCC-CeEEEEEc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSW 66 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~i~~~ 66 (150)
.|+|....|++-.....--++++.... .++.-....+.|.|.+|.+||++|+++-.+ =.-++||-
T Consensus 119 VWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 119 VWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 588888888776655444556655432 222222456889999999999998766333 34556763
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=93.18 E-value=2.8 Score=31.89 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=60.9
Q ss_pred cceEEEEcCCCeEEEEEcCC-------C----e---------eeeeeccCCCcEEEEEEE--eCCCEEEeecCCCeEEEE
Q 031924 7 AMKLLGTSGDGTLSVCNLRK-------N----T---------VQTRSEFSEEELTSVVLM--KNGRKVVCGSQSGTVLLY 64 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~ 64 (150)
...|+.+..||.|.+|..+. . + +... ........+++++ ...+.+|+++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~-~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFH-LRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeE-eecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 45788888999999997632 0 0 0011 1124477889998 778888888888888887
Q ss_pred Eccccc-cccc-ccccccccceeEee---ec-C--CC-EEEEecCCCcEEEEec
Q 031924 65 SWGYFK-DCSD-RFVGLSPNSVDALL---KL-D--ED-RVITGSENGLISLVGI 109 (150)
Q Consensus 65 ~~~~~~-~~~~-~~~~~~~~~v~~~~---~~-~--~~-~l~~~~~dg~i~~~d~ 109 (150)
-+.... +... .-.. +...|-++. .. + |. .+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~-~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQ-HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccc-cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 654211 1111 0001 223344433 11 2 32 7788888999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=93.08 E-value=2.3 Score=30.25 Aligned_cols=139 Identities=12% Similarity=0.043 Sum_probs=79.8
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeee---eeec-cCCCcEEEEEEEe-----CCCEEEeecCCCeEEEEEccccc-c----
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQ---TRSE-FSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYFK-D---- 71 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~-~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~~~~~~~-~---- 71 (150)
+...|++|+.+|.++||+...+... ..++ .-..+|..+...+ +...|++ =.-.++.+|.+...+ .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 3458999999999999998664311 1111 2245777776543 2334444 356788888873221 1
Q ss_pred ---cccccccccc---cceeEee-e---cC-CCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 72 ---CSDRFVGLSP---NSVDALL-K---LD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 72 ---~~~~~~~~~~---~~v~~~~-~---~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
.+..+.. |. ...+.+. . .. ...++.-+.||.+.+++-+.....+.++. .- -..-+.|.+....+++
T Consensus 115 ~~~~L~~~ye-h~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~l-lPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 115 NQYQLELIYE-HSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FL-LPGPLCYCPRTDSFVT 191 (418)
T ss_pred cEEEEEEEEE-EecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CC-CCcCeEEeecCCEEEE
Confidence 1111111 21 1122122 1 12 36888999999999998755443333332 12 1344788888888888
Q ss_pred cccccccc
Q 031924 141 GFLSLNVN 148 (150)
Q Consensus 141 ~~~~~~v~ 148 (150)
++.++.+.
T Consensus 192 ~sss~~l~ 199 (418)
T PF14727_consen 192 ASSSWTLE 199 (418)
T ss_pred ecCceeEE
Confidence 88776553
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.01 E-value=1.4 Score=32.02 Aligned_cols=60 Identities=12% Similarity=0.243 Sum_probs=43.2
Q ss_pred CCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEecc
Q 031924 48 NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGIL 110 (150)
Q Consensus 48 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~ 110 (150)
...++++++..|-|++||- -..+....+++ -...|..+. ..+|.++++.+. ..+.+.|++
T Consensus 572 esGyIa~as~kGDirLyDR-ig~rAKtalP~-lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDR-IGKRAKTALPG-LGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehh-hcchhhhcCcc-cccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 3568999999999999994 23344455666 677788777 778888877664 466666653
|
|
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.41 Score=20.13 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=20.8
Q ss_pred CEEEEecCCCcEEEEeccCCeeeeec
Q 031924 93 DRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 93 ~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
..++.++.+|.++.+|.++++.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36777888999999999888876543
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=3.8 Score=31.22 Aligned_cols=105 Identities=10% Similarity=-0.005 Sum_probs=56.8
Q ss_pred eeecCcceEEEEc-----CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC------CeEEEEEccccc
Q 031924 2 TFAADAMKLLGTS-----GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFK 70 (150)
Q Consensus 2 ~~~~~~~~l~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~ 70 (150)
.|+||+++|+.+. ....|++.|+.+++.+........ ..++|.+|++.|+-...+ ..++.+++.+..
T Consensus 133 ~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~ 210 (686)
T PRK10115 133 AITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA 210 (686)
T ss_pred EECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence 5789999888752 234588889988753322111111 458999998876554332 356667775331
Q ss_pred ccc-ccccccccccee-Eee-ecCCCEEEEecC---CCcEEEEec
Q 031924 71 DCS-DRFVGLSPNSVD-ALL-KLDEDRVITGSE---NGLISLVGI 109 (150)
Q Consensus 71 ~~~-~~~~~~~~~~v~-~~~-~~~~~~l~~~~~---dg~i~~~d~ 109 (150)
... ..+.. ...... ... +.+++.++..+. ++.+.+++.
T Consensus 211 ~~d~lv~~e-~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 211 SQDELVYEE-KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred hHCeEEEee-CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 111 12222 122222 222 436665544332 357888884
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=92.45 E-value=1.5 Score=32.21 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=39.2
Q ss_pred CcceEEEEcCCCeEEEEEcCC----Ceeee-----------eec-----------cCCCcEEEEEEEe----CCCEEEee
Q 031924 6 DAMKLLGTSGDGTLSVCNLRK----NTVQT-----------RSE-----------FSEEELTSVVLMK----NGRKVVCG 55 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~----~~~~~-----------~~~-----------~~~~~v~~~~~~~----~~~~l~~~ 55 (150)
+...++.+..||.+-...... +.... .+. .........+... +..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 566777777888888877664 11110 000 1123455566665 67889999
Q ss_pred cCCCeEEEEEccccccc
Q 031924 56 SQSGTVLLYSWGYFKDC 72 (150)
Q Consensus 56 ~~d~~i~i~~~~~~~~~ 72 (150)
+.|+++|+||+.+ +++
T Consensus 237 ~~D~~LRiW~l~t-~~~ 252 (547)
T PF11715_consen 237 SRDHTLRIWSLET-GQC 252 (547)
T ss_dssp ETTSEEEEEETTT-TCE
T ss_pred eCCCeEEEEECCC-CeE
Confidence 9999999999964 344
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.54 Score=20.76 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=18.9
Q ss_pred cCCCcEEEEEEEeCCCEEE-eecCC--CeEEEE
Q 031924 35 FSEEELTSVVLMKNGRKVV-CGSQS--GTVLLY 64 (150)
Q Consensus 35 ~~~~~v~~~~~~~~~~~l~-~~~~d--~~i~i~ 64 (150)
.....-....|+|||+.|+ +...+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445667889999998876 44455 555555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=91.80 E-value=1.7 Score=25.64 Aligned_cols=97 Identities=11% Similarity=0.050 Sum_probs=57.6
Q ss_pred EEEEEeCCCEEEeecCCCeEEEEEcccccc-------cccccccccccceeEee--ec----CCCEEEEecCCCcEEEEe
Q 031924 42 SVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-------CSDRFVGLSPNSVDALL--KL----DEDRVITGSENGLISLVG 108 (150)
Q Consensus 42 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-------~~~~~~~~~~~~v~~~~--~~----~~~~l~~~~~dg~i~~~d 108 (150)
.-+|......|++++.-|+|.|++...... .+..+ . -...|+++. .. ....|+.|+ ...+..||
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-N-in~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-N-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-E-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 345666667788999999999998643211 12222 2 345677765 21 245677766 45788999
Q ss_pred ccCCeeeeeccCCCCcceeEEEEcC----CccEEEeccc
Q 031924 109 ILPNRIIQPIAEHSEYPIESLGIAS----VLCFINSGFL 143 (150)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~s~~~ 143 (150)
+..+..+..-..+ + .++++.+-. +..++..|+.
T Consensus 80 V~~N~d~Fyke~~-D-Gvn~i~~g~~~~~~~~l~ivGGn 116 (136)
T PF14781_consen 80 VENNSDLFYKEVP-D-GVNAIVIGKLGDIPSPLVIVGGN 116 (136)
T ss_pred cccCchhhhhhCc-c-ceeEEEEEecCCCCCcEEEECce
Confidence 9876644333222 3 477776642 3445555553
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.86 Score=36.14 Aligned_cols=90 Identities=14% Similarity=0.088 Sum_probs=53.7
Q ss_pred eeecCcc-eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc-
Q 031924 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL- 79 (150)
Q Consensus 2 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~- 79 (150)
.|+|.-. ..+....|+.|++..+................++++|+|.|+.++.|...|++.=|... .++...+.+.
T Consensus 162 ~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp 239 (1405)
T KOG3630|consen 162 VWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPP 239 (1405)
T ss_pred cccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCC
Confidence 3555322 33445577777777665433322222345578999999999999999999999888753 2333333220
Q ss_pred --cccceeEeeecCCC
Q 031924 80 --SPNSVDALLKLDED 93 (150)
Q Consensus 80 --~~~~v~~~~~~~~~ 93 (150)
....|.+++....+
T Consensus 240 ~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 240 VEENYRVLSVTWLSTQ 255 (1405)
T ss_pred cCCCcceeEEEEecce
Confidence 12456666644333
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.49 E-value=3.3 Score=28.46 Aligned_cols=137 Identities=9% Similarity=-0.025 Sum_probs=67.3
Q ss_pred eeecCcceEEEEcCCCeEEE-EEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc--
Q 031924 2 TFAADAMKLLGTSGDGTLSV-CNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i-~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-- 78 (150)
.+.|++.+++++ ..|.+.. +|-....-..........+.++.+.++++.++++ ..|.+++=.. ..+..-+....
T Consensus 179 ~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~-d~G~sW~~~~~~~ 255 (334)
T PRK13684 179 RRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDP-DDLESWSKPIIPE 255 (334)
T ss_pred EECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccC-CCCCccccccCCc
Confidence 345666555555 4444432 2221111222222345678999999998876665 5676653222 12221111111
Q ss_pred c-cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccC--CCCcceeEEEEcCCccEEEeccc
Q 031924 79 L-SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAE--HSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 79 ~-~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
. ....+..+. .+++..++ .+.+|.+.. ....++..+.... ........+.|..+++.+++|..
T Consensus 256 ~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 256 ITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred cccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCC
Confidence 0 112344555 44555544 556776553 3344444333321 11113777888887888877654
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=91.46 E-value=2.8 Score=27.50 Aligned_cols=126 Identities=9% Similarity=-0.005 Sum_probs=63.7
Q ss_pred EEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC---CeEEEEEccccc---ccc---cccccccccceeEeee
Q 031924 19 LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS---GTVLLYSWGYFK---DCS---DRFVGLSPNSVDALLK 89 (150)
Q Consensus 19 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~~~~~~~---~~~---~~~~~~~~~~v~~~~~ 89 (150)
-.+||+.+++....-........+-.+.+||+.+.+|+.. ..+++|+..... ... ..+.. ...--+...-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~-~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQS-GRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccC-CCccccceEC
Confidence 3467777765432212222333444566899999988752 457888753200 111 11111 1111122336
Q ss_pred cCCCEEEEecCCC-cEEEEeccC--Cee--eeeccC----CCCcceeEEEEcCCccEEEeccccc
Q 031924 90 LDEDRVITGSENG-LISLVGILP--NRI--IQPIAE----HSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 90 ~~~~~l~~~~~dg-~i~~~d~~~--~~~--~~~~~~----~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
++|+.|+.|+.+. ...+|.... ... +..+.. ....--..+...|+|++++.+....
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s 191 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS 191 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc
Confidence 7899999888775 344454321 111 111110 1111133567789999988776544
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.24 E-value=3.5 Score=28.32 Aligned_cols=102 Identities=10% Similarity=-0.005 Sum_probs=55.0
Q ss_pred CCcEEEEEEEeCCCEEEeecCCCeEEE-EEcccccc-cccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe
Q 031924 37 EEELTSVVLMKNGRKVVCGSQSGTVLL-YSWGYFKD-CSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR 113 (150)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~i-~~~~~~~~-~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~ 113 (150)
...+.++.+.+++.+++++ ..|.+.. ++- .++ ....... ....+..+. .++++.++.+ ..|.+++=....+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~--gg~tW~~~~~~-~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP--GQTAWTPHQRN-SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCC--CCCeEEEeeCC-CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence 4568889998988766555 4555543 221 111 1111112 344566665 5667766654 56776543333444
Q ss_pred eeeeccCC---CCcceeEEEEcCCccEEEeccc
Q 031924 114 IIQPIAEH---SEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 114 ~~~~~~~~---~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
........ ....+..+.+.|++..++.|..
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN 279 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEEEcCC
Confidence 33322111 2234778899998887776543
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.046 Score=38.79 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=58.2
Q ss_pred CeeecCcceEE-EEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
|+|+.++..++ .+...+.+.+||+.+......-.+....-.-+.|++.+..++.+...|.+.+|+.+...+.. .. |+
T Consensus 80 m~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii-v~-Gk 157 (615)
T KOG2247|consen 80 MAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII-VM-GK 157 (615)
T ss_pred hhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhh-hh-cc
Confidence 45666666444 45578899999998764322111222222237899988899999999999999975332222 21 22
Q ss_pred cccceeEeeecCCCEEEEecCC
Q 031924 80 SPNSVDALLKLDEDRVITGSEN 101 (150)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~d 101 (150)
|..++++.+..-.++.+.++.|
T Consensus 158 h~RRgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 158 HQRRGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred cccceeEEEecccceeeecCcH
Confidence 5555666653323333434333
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=91.10 E-value=2 Score=27.49 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=40.6
Q ss_pred ceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeCCCEEEeecCC---C---eEEEE-Ecc
Q 031924 8 MKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQS---G---TVLLY-SWG 67 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~---~i~i~-~~~ 67 (150)
..|+.+.....|.+|++...+ ....+. .-+.|..+.++..|+++++--.+ . .+|+| +++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhh
Confidence 445454567789999998433 344444 34889999999999999986322 2 67776 443
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.92 Score=20.04 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=21.9
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeecc
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEF 35 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~ 35 (150)
.++.++.+|.+.-+|.++|+.+...+.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 455668999999999999998876653
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.30 E-value=5.4 Score=28.86 Aligned_cols=90 Identities=12% Similarity=0.132 Sum_probs=55.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee----eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
|.|++|.+.+++--.+++|.+++....+.. ..-+.....+....|..+ .-++..+..| +.+|......+.++..
T Consensus 72 IkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlV 149 (657)
T KOG2377|consen 72 IKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLV 149 (657)
T ss_pred EEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhh
Confidence 479999999999999999999997543322 222333456889999876 4455444443 5556553333455555
Q ss_pred ccccccceeEee-ecCCC
Q 031924 77 VGLSPNSVDALL-KLDED 93 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~~~~ 93 (150)
+. +...|+... .++.+
T Consensus 150 ks-~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 150 KS-HNLNVNWYMYCPETA 166 (657)
T ss_pred hh-cccCccEEEEccccc
Confidence 55 655666544 44444
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.22 E-value=4.2 Score=27.48 Aligned_cols=104 Identities=9% Similarity=0.009 Sum_probs=60.1
Q ss_pred ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEeeec-CCCEEEEecCCCcEEEEeccCC
Q 031924 34 EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKL-DEDRVITGSENGLISLVGILPN 112 (150)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~~~d~~~~ 112 (150)
.+....+.++.|+|+.+.|++......-.++- ...|+.+.+++-..-.-...+... +++++++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVEl-t~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVEL-TKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEE-ecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 44556699999999999888877766665553 345777777752001111223322 4445555555777887766443
Q ss_pred e----------eeeeccCCCCcceeEEEEcCCccEEE
Q 031924 113 R----------IIQPIAEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 113 ~----------~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (150)
. .+...... ..+...++|+|..+.|.
T Consensus 161 t~~~~~~~~~i~L~~~~k~-N~GfEGlA~d~~~~~l~ 196 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKK-NKGFEGLAWDPVDHRLF 196 (316)
T ss_pred ccEEeccceEEeccccCCC-CcCceeeecCCCCceEE
Confidence 1 11122121 22578899998665443
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=90.11 E-value=4.6 Score=31.60 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=40.8
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEe-ecCCC-----eEEEEEcccccc
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG-----TVLLYSWGYFKD 71 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~-----~i~i~~~~~~~~ 71 (150)
+.+.....+.|.+-|.........-.....++..-+|||||++|+- .+.++ .|++-++++.+.
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~ 389 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGS 389 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCC
Confidence 3333333458888888765544331345778899999999999975 44443 477778765543
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=90.09 E-value=3.5 Score=26.41 Aligned_cols=46 Identities=2% Similarity=0.043 Sum_probs=33.3
Q ss_pred CCEEEEecCCCcEEEEecc--CCeeeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 92 EDRVITGSENGLISLVGIL--PNRIIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 92 ~~~l~~~~~dg~i~~~d~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
+.++++ ...+.|.+|++. ..+.+..+..- + .|..+.++..|+|++|
T Consensus 29 d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv-~-~V~~l~y~~~GDYlvT 76 (215)
T PF14761_consen 29 DALFVA-ASGCKVEVYDLEQEECPLLCTFSTV-G-RVLQLVYSEAGDYLVT 76 (215)
T ss_pred ceEEEE-cCCCEEEEEEcccCCCceeEEEcch-h-heeEEEeccccceEEE
Confidence 344443 566789999987 34466666443 5 4899999999999987
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=89.94 E-value=5 Score=27.90 Aligned_cols=106 Identities=12% Similarity=0.101 Sum_probs=60.8
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccC--CCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccc-cee
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFS--EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN-SVD 85 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~v~ 85 (150)
.++.+..+|.|.-+|.++++.+...... ...+..-.+..+|+ ++.++.++.+..+|.+ .++..-.... ... .+.
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~-~G~~~W~~~~-~~~~~~~ 146 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDAS-TGTLVWSRNV-GGSPYYA 146 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECC-CCcEEEEEec-CCCeEEe
Confidence 4455568888999999988766433322 13333334444565 8888899988888864 3555544443 221 011
Q ss_pred EeeecCCCEEEEecCCCcEEEEeccCCeeeee
Q 031924 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQP 117 (150)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 117 (150)
.-.-.....+...+.++.+.-.+..+++....
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 11111233444444678888888777766544
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=89.87 E-value=5.4 Score=28.26 Aligned_cols=103 Identities=7% Similarity=-0.099 Sum_probs=57.0
Q ss_pred CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc-----cccccccc-cccceeEeeecCCCEEEEecCCCcEEEEec
Q 031924 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-----CSDRFVGL-SPNSVDALLKLDEDRVITGSENGLISLVGI 109 (150)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-----~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~ 109 (150)
....+..+.+.+++..++++ ..|.+..=+ . .++ ........ ....+..+...+.+.++..+..|.+....
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~-d-~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~- 354 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGLYVSK-G-TGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST- 354 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceEEEec-C-CCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-
Confidence 34578899999988877666 556654322 1 222 11111110 11235566544444555566778766553
Q ss_pred cCCeeeeecc---CCCCcceeEEEEcCCccEEEeccc
Q 031924 110 LPNRIIQPIA---EHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 110 ~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
..++..+... .-.. +...+.|.++++.+++|..
T Consensus 355 D~G~tW~~~~~~~~~~~-~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 355 DGGKSWKRDKGADNIAA-NLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred CCCcceeEccccCCCCc-ceeEEEEcCCCceEEEeCC
Confidence 3444433332 1122 4778999888888887654
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=89.72 E-value=4.8 Score=27.42 Aligned_cols=110 Identities=12% Similarity=0.029 Sum_probs=63.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcC------CC-eeeeeecc-----CCCcEEEEEEEeCCCE------------EEeec
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLR------KN-TVQTRSEF-----SEEELTSVVLMKNGRK------------VVCGS 56 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~~------------l~~~~ 56 (150)
|+++|.+.+-++....+...+||.. .. .....+.. .....+.+.|+....+ ++.++
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t 107 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT 107 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Confidence 5788988888888889999999987 12 22333331 1335677777743322 56778
Q ss_pred CCCeEEEEEcccccc----ccccccccccccee---Eee-ecCCCEE-EEecCCCcEEEEecc
Q 031924 57 QSGTVLLYSWGYFKD----CSDRFVGLSPNSVD---ALL-KLDEDRV-ITGSENGLISLVGIL 110 (150)
Q Consensus 57 ~d~~i~i~~~~~~~~----~~~~~~~~~~~~v~---~~~-~~~~~~l-~~~~~dg~i~~~d~~ 110 (150)
+||+|.-|....... ....+.......+. ++. ...+++| ++--.+++|.++|-.
T Consensus 108 EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 108 EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 999999998531111 11111110123343 222 2223444 444468899999864
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=89.67 E-value=3.3 Score=25.46 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=21.9
Q ss_pred cEEEEEEEeCC------CEEEeecCCCeEEEEEcc
Q 031924 39 ELTSVVLMKNG------RKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 39 ~v~~~~~~~~~------~~l~~~~~d~~i~i~~~~ 67 (150)
.+..++|||.| ..|++.+.++.+.+|...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 67788898853 357788888899888753
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.35 E-value=6.6 Score=28.51 Aligned_cols=129 Identities=10% Similarity=-0.111 Sum_probs=61.1
Q ss_pred CcceEEEEcCC--CeEEEEEcCCCeeeeeeccCCCcE-EEEEEEeCCCEEEeecCCC---eEEEEEccccccccc--ccc
Q 031924 6 DAMKLLGTSGD--GTLSVCNLRKNTVQTRSEFSEEEL-TSVVLMKNGRKVVCGSQSG---TVLLYSWGYFKDCSD--RFV 77 (150)
Q Consensus 6 ~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~---~i~i~~~~~~~~~~~--~~~ 77 (150)
+++..+.|+.+ ..+..||..+++-... ..-..+. ......-+|+..+.|+.++ .+..||.+.. +... .+.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~-~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~-~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNM-PSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD-QWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEEC-CCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC-EEEeCCCCC
Confidence 45555566542 4577788766543211 1111111 1122233566667777553 4667887532 2221 111
Q ss_pred cccccceeEeeecCCCEEEEecCCCcEEEEeccCCe--eeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 78 GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 78 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
. +..-.++...++.+.+.|+ .+.+||..+++ .+..+..... .. .++ --+++..+.||.+
T Consensus 396 ~--~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~-~~-~~~-v~~~~IYviGG~~ 456 (480)
T PHA02790 396 Y--PHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRD-NP-ELI-IVDNKLLLIGGFY 456 (480)
T ss_pred C--ccccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcc-cc-EEE-EECCEEEEECCcC
Confidence 1 1111133355666667664 46778887654 2222221111 12 222 3467788888754
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.96 E-value=11 Score=30.31 Aligned_cols=105 Identities=23% Similarity=0.271 Sum_probs=63.8
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeec--cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc-
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~- 78 (150)
+..|-..++++| ....+++||+-..+.++..+ .....|+.+.+ .+.++++|+..-.+.++-.+..++....+..
T Consensus 940 Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD 1016 (1205)
T KOG1898|consen 940 AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFADD 1016 (1205)
T ss_pred EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeCC
Confidence 345555566666 45599999998876654332 22345555554 4677888887666766555433444444432
Q ss_pred ccccceeEeeecCCCEEEEecCCCcEEEEec
Q 031924 79 LSPNSVDALLKLDEDRVITGSENGLISLVGI 109 (150)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~ 109 (150)
.-+..++++...+-..++.+..=|.+.+..+
T Consensus 1017 ~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1017 PVPRHVTALELLDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CccceeeEEEEecCCceeeccccCcEEEEEC
Confidence 0244566666666677777777777777654
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=88.93 E-value=1.3 Score=24.14 Aligned_cols=40 Identities=5% Similarity=0.012 Sum_probs=24.7
Q ss_pred cCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 99 SENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 99 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
..+|.+.-||+.+++..-.+.. -.+ .+.+++++|+.+++.
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~-L~f-pNGVals~d~~~vlv 73 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDG-LYF-PNGVALSPDESFVLV 73 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEE-ESS-EEEEEE-TTSSEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhC-CCc-cCeEEEcCCCCEEEE
Confidence 4567888899988774333322 133 778999999997654
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=88.73 E-value=5.5 Score=26.78 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=54.6
Q ss_pred CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec------CCCeEEEEEccccccccccccc----cccccee
Q 031924 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFVG----LSPNSVD 85 (150)
Q Consensus 16 d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~i~~~~~~~~~~~~~~~----~~~~~v~ 85 (150)
-..|.+||....+-..--..-.+.|+++.|..+.+.++.|. ....+-.||+... .-..+.+ .-+.++.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~--~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ--TWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC--eeeecCCcccccCCCcEE
Confidence 45799999887765544444567899999997666666664 3456778887532 1112221 0235566
Q ss_pred Eee--ecCCC-EEEEec-CC--CcEEEEeccC
Q 031924 86 ALL--KLDED-RVITGS-EN--GLISLVGILP 111 (150)
Q Consensus 86 ~~~--~~~~~-~l~~~~-~d--g~i~~~d~~~ 111 (150)
.+. ..++. ..+.|. .+ ..+..||-..
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 554 33443 444443 23 3566676543
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=88.59 E-value=9.9 Score=29.53 Aligned_cols=68 Identities=10% Similarity=0.174 Sum_probs=44.4
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCe-----ee-------eee-c--cCCCcEEEEEEEeCCCEEEeecCCCeEEEE
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNT-----VQ-------TRS-E--FSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~-----~~-------~~~-~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 64 (150)
++|+| +.+.||+....|...||++.... .. ..+ . ...+.-..+.|.++...|++.+.. .+.++
T Consensus 151 v~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~ 229 (765)
T PF10214_consen 151 VAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLI 229 (765)
T ss_pred EEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEE
Confidence 57888 56799999999999999992211 11 111 0 011233478888887777777554 67888
Q ss_pred Ecccc
Q 031924 65 SWGYF 69 (150)
Q Consensus 65 ~~~~~ 69 (150)
|++..
T Consensus 230 d~~~~ 234 (765)
T PF10214_consen 230 DFESN 234 (765)
T ss_pred ECCCC
Confidence 98643
|
These proteins are found in fungi. |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=88.57 E-value=2.1 Score=23.28 Aligned_cols=41 Identities=12% Similarity=-0.030 Sum_probs=26.6
Q ss_pred cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee
Q 031924 14 SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG 55 (150)
Q Consensus 14 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 55 (150)
..+|.+.-||..+++....+.+ -...+.++.++|+.+++.+
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence 3457888889888865433333 4467899999999977654
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=88.16 E-value=12 Score=29.84 Aligned_cols=95 Identities=13% Similarity=0.141 Sum_probs=66.7
Q ss_pred CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-ccccccccccccceeEeeecCCC
Q 031924 15 GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRFVGLSPNSVDALLKLDED 93 (150)
Q Consensus 15 ~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 93 (150)
-...|++|++.+++.++.-..+..++..+.....|..+++|+.=+.+.+...+... .........++.+++++...+++
T Consensus 846 In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d 925 (1096)
T KOG1897|consen 846 INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDD 925 (1096)
T ss_pred cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCc
Confidence 56689999999887666555667788899999999999999987777765543221 22222221167778777766777
Q ss_pred EEEEecCCCcEEEEec
Q 031924 94 RVITGSENGLISLVGI 109 (150)
Q Consensus 94 ~l~~~~~dg~i~~~d~ 109 (150)
.++-+..+|.+.+...
T Consensus 926 ~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 926 TYLGAENSGNLFTVRK 941 (1096)
T ss_pred eEEeecccccEEEEEe
Confidence 7777777888777643
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.46 E-value=9.1 Score=27.83 Aligned_cols=103 Identities=12% Similarity=-0.003 Sum_probs=51.2
Q ss_pred cceEEEEcCC-----CeEEEEEcCCCeeee--eeccCCCcEEEEEEEeCCCEEEeecCC--CeEEEEEccccc-cccccc
Q 031924 7 AMKLLGTSGD-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFK-DCSDRF 76 (150)
Q Consensus 7 ~~~l~~~~~d-----~~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~i~~~~~~~-~~~~~~ 76 (150)
+..++.|+.+ ..+..||..+++-.. .+....... ++ ..-++...+.|+.+ ..+..||..... .....+
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SG-VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eE-EEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 3445556543 256678887765322 111111111 12 23467766777754 357778764221 111122
Q ss_pred ccccccceeEeeecCCCEEEEecCCC---cEEEEeccCCe
Q 031924 77 VGLSPNSVDALLKLDEDRVITGSENG---LISLVGILPNR 113 (150)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~ 113 (150)
+. +-.-.+....++++.+.|+.++ .+..||+.+.+
T Consensus 350 ~~--~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 350 LK--PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CC--CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 11 1111123356778888887654 46678876654
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=86.78 E-value=8.1 Score=26.56 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=21.8
Q ss_pred cEEEEEEEeCCCEEEeecCCCeEEEEEc
Q 031924 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~i~~~ 66 (150)
....|+|.|+|+.+++ ...|.|++++.
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~ 29 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDK 29 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEET
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeC
Confidence 3578999999887665 46999999983
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.42 E-value=6 Score=29.15 Aligned_cols=67 Identities=9% Similarity=0.063 Sum_probs=43.6
Q ss_pred eeecCcceEEEEcCCCeEEEEE---------cCCCeee--eee-------c--cCCCcEEEEEEEeCC---CEEEeecCC
Q 031924 2 TFAADAMKLLGTSGDGTLSVCN---------LRKNTVQ--TRS-------E--FSEEELTSVVLMKNG---RKVVCGSQS 58 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d---------~~~~~~~--~~~-------~--~~~~~v~~~~~~~~~---~~l~~~~~d 58 (150)
..++.|..++-.+.+|-+.++= ++.++.. .+. . ...-.+..++|+|+. ..+..-+.|
T Consensus 110 l~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sd 189 (741)
T KOG4460|consen 110 LLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSD 189 (741)
T ss_pred EecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecC
Confidence 3577888888888887666543 1223221 111 1 111256788999974 678888899
Q ss_pred CeEEEEEccc
Q 031924 59 GTVLLYSWGY 68 (150)
Q Consensus 59 ~~i~i~~~~~ 68 (150)
..+++||+..
T Consensus 190 nviRiy~lS~ 199 (741)
T KOG4460|consen 190 NVIRIYSLSE 199 (741)
T ss_pred cEEEEEecCC
Confidence 9999999853
|
|
| >PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A | Back alignment and domain information |
|---|
Probab=85.58 E-value=2.2 Score=18.92 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=15.4
Q ss_pred CcceEEEEcCCCeEEEEEcCC
Q 031924 6 DAMKLLGTSGDGTLSVCNLRK 26 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~ 26 (150)
.+..++.++.||++..+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 456788888999999998763
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=84.67 E-value=10 Score=25.80 Aligned_cols=62 Identities=18% Similarity=0.082 Sum_probs=31.2
Q ss_pred CcceEEEEcC-----CCeEEEEEcCCCeeeee--eccCCCcEEEEEEEeCCCEEEeecCCC----eEEEEEccc
Q 031924 6 DAMKLLGTSG-----DGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQSG----TVLLYSWGY 68 (150)
Q Consensus 6 ~~~~l~~~~~-----d~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~i~~~~~ 68 (150)
+++..+.|+. ...+..||+.+.+-... +.. ...........+++..+.|+.++ .+..||..+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 3445555543 24677888876543221 111 11222222344566677777653 345788753
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=84.44 E-value=2 Score=17.50 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=14.1
Q ss_pred EEEEEEEeCCCEEEeecCCCeEEEE
Q 031924 40 LTSVVLMKNGRKVVCGSQSGTVLLY 64 (150)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~~i~i~ 64 (150)
..+++.+++|+.+++-+.+..|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3556666666655555555555543
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=83.92 E-value=18 Score=28.01 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=45.2
Q ss_pred cEEEEEEEeCCCEEEeecCCCeEEEEEcccccc----------ccc-c-------cccccccceeEee-ec---CCCEEE
Q 031924 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD----------CSD-R-------FVGLSPNSVDALL-KL---DEDRVI 96 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~----------~~~-~-------~~~~~~~~v~~~~-~~---~~~~l~ 96 (150)
.|..+.++|+|..++..+..|...+.=.+.+++ ... . +.......|..+. +| ++..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 577889999999999888877555543322211 010 0 0110122344333 44 357888
Q ss_pred EecCCCcEEEEeccC
Q 031924 97 TGSENGLISLVGILP 111 (150)
Q Consensus 97 ~~~~dg~i~~~d~~~ 111 (150)
.-..|+.+|+||+..
T Consensus 166 vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 166 VLTSDNTLRLYDISD 180 (717)
T ss_pred EEecCCEEEEEecCC
Confidence 999999999999964
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=83.56 E-value=5.7 Score=30.73 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=27.4
Q ss_pred CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc
Q 031924 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~ 67 (150)
....++++.-+|.++.++.+.+||++++|++.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~ 44 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFI 44 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeec
Confidence 34567788888999999999999999999984
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=83.48 E-value=12 Score=25.73 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=38.5
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeee---ee-eccCCCcEEEEEEEeCCCEEEeecCCCeEE
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQ---TR-SEFSEEELTSVVLMKNGRKVVCGSQSGTVL 62 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~---~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 62 (150)
.+.++++.-..+.|....++.+..+ .. +......+..+++.|||...++-+.+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4567777777788888888754322 22 223344799999999999888887788764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=83.44 E-value=12 Score=25.49 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=42.9
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCC-cEE----EEEEEeCCCEEEeecCCCeEEEEEc
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-ELT----SVVLMKNGRKVVCGSQSGTVLLYSW 66 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~----~~~~~~~~~~l~~~~~d~~i~i~~~ 66 (150)
.++|.+|+++-.-..|.+.|.++++.+..+.+... ... ..++-.+-+++-.+..++.|.+||=
T Consensus 152 ~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 152 DDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred cCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 45778998887788999999999999888876522 111 1333333444444567788999984
|
|
| >PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences | Back alignment and domain information |
|---|
Probab=83.15 E-value=5.8 Score=23.50 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=22.6
Q ss_pred eecCcceEEEEc-CCCeEEEEEcCCCee-eeeec--cCCCcEEEEEEEeC
Q 031924 3 FAADAMKLLGTS-GDGTLSVCNLRKNTV-QTRSE--FSEEELTSVVLMKN 48 (150)
Q Consensus 3 ~~~~~~~l~~~~-~d~~i~i~d~~~~~~-~~~~~--~~~~~v~~~~~~~~ 48 (150)
|++|.+.|+.++ +|+.|+.|.+...+. +..+. .......++++.|.
T Consensus 18 yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lPK 67 (136)
T PF08954_consen 18 YDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLPK 67 (136)
T ss_dssp E-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--G
T ss_pred EcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccccCCCeEeeEecCc
Confidence 567777766655 799999999987631 22222 23445667777774
|
It has no known function []. ; PDB: 2B4E_A 2AQ5_A. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.81 E-value=13 Score=25.46 Aligned_cols=132 Identities=8% Similarity=0.043 Sum_probs=74.6
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeec--cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc--ccccccccccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDRFVGLSPN 82 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~ 82 (150)
+++...+..+.-++|.|+.+......+. ...+.-.+ +.-.|++..++..|.-+.++|+....+ ...+... +.
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~lagrya~--~~ 171 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL--PG 171 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCceeeeeecc--CC
Confidence 4566777777889999987754322111 11233333 344688998888665566778864332 1222222 11
Q ss_pred ceeEeeecCCCEEEEecCCCcEEEEeccCCe---eeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 83 SVDALLKLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 83 ~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
.-+.-....|++-..+..|+-+.+.|+.... .+.... ... .+.++..+++-.+++.....
T Consensus 172 ~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~-g~~sv~vsdnr~y~vvy~eg 234 (370)
T COG5276 172 GDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGP-GTYSVSVSDNRAYLVVYDEG 234 (370)
T ss_pred CCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCC-ceEEEEecCCeeEEEEcccc
Confidence 1111113457777778889999999986433 222221 111 37777888877777655443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=82.80 E-value=14 Score=25.84 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=51.1
Q ss_pred CcEEEEEEEeCCCEEEeec-----------CCC-eEEEEEccc-cccc--ccccccccccceeEee-ecCCCEEEEecCC
Q 031924 38 EELTSVVLMKNGRKVVCGS-----------QSG-TVLLYSWGY-FKDC--SDRFVGLSPNSVDALL-KLDEDRVITGSEN 101 (150)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~i~~~~~-~~~~--~~~~~~~~~~~v~~~~-~~~~~~l~~~~~d 101 (150)
.....++|.++|+.+++-. ..+ .|.+++-.. .++. ...+.. .......+. .+++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC-EEE-eCCC
Confidence 4567889999999777643 223 676665321 2221 123322 222334454 4555 444 4433
Q ss_pred CcEEEE-eccC-------Ce-eeeeccCC----CCcceeEEEEcCCccEEEecc
Q 031924 102 GLISLV-GILP-------NR-IIQPIAEH----SEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 102 g~i~~~-d~~~-------~~-~~~~~~~~----~~~~i~~~~~~~~~~~l~s~~ 142 (150)
.|..+ |... .+ .+..+... .. ....++|.|||.+.++-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~-~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHH-SLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccc-cccCceECCCCCEEEecc
Confidence 44444 4421 11 22223221 12 377899999998777555
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=81.85 E-value=17 Score=26.37 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=32.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCee--eeee----c-cCCCcEEEEEEEeCC
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRS----E-FSEEELTSVVLMKNG 49 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~----~-~~~~~v~~~~~~~~~ 49 (150)
|+|.||++.|++--..|.|++++...+.. ...+ . ..+..+..++++|+-
T Consensus 35 maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 35 LLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 57889998777764469999998655432 1111 1 135678999999873
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=81.65 E-value=15 Score=25.52 Aligned_cols=107 Identities=12% Similarity=0.059 Sum_probs=61.8
Q ss_pred eeecCcceEEEE--cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc---
Q 031924 2 TFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF--- 76 (150)
Q Consensus 2 ~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--- 76 (150)
+++.|+++++.. +-...|.|.|++.++.+..+... +... .+-...+.|.+-|.||++.-..+...++..++-
T Consensus 101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-GC~~--iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~ 177 (342)
T PF06433_consen 101 ALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-GCWL--IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKV 177 (342)
T ss_dssp EE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-SEEE--EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEE
T ss_pred EEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-CEEE--EEecCCCceEEEecCCceEEEEECCCCCEeEeeccc
Confidence 456777777664 34567888888888777655432 2211 121123568888899999988887555543221
Q ss_pred -cccccccee--EeeecCCCEEEEecCCCcEEEEeccCC
Q 031924 77 -VGLSPNSVD--ALLKLDEDRVITGSENGLISLVGILPN 112 (150)
Q Consensus 77 -~~~~~~~v~--~~~~~~~~~l~~~~~dg~i~~~d~~~~ 112 (150)
.. ..+++. ......+..++.-+.+|.|+-.|+...
T Consensus 178 F~~-~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~ 215 (342)
T PF06433_consen 178 FDP-DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGD 215 (342)
T ss_dssp SST-TTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTS
T ss_pred cCC-CCcccccccceECCCCeEEEEecCCEEEEEeccCC
Confidence 11 112221 111234555666788999998887543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF14779 BBS1: Ciliary BBSome complex subunit 1 | Back alignment and domain information |
|---|
Probab=80.73 E-value=14 Score=24.56 Aligned_cols=57 Identities=9% Similarity=0.105 Sum_probs=37.6
Q ss_pred ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEE---EEEEeCCCEEEeecCCCeEEEE
Q 031924 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTS---VVLMKNGRKVVCGSQSGTVLLY 64 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~d~~i~i~ 64 (150)
..++.|.+++.|.|.|.+....+.+..-..-++.= -.|..-.-++++++.||.|++.
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 36888889999999999887776665544333321 1222123457788899988763
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=80.32 E-value=7.8 Score=28.60 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=15.3
Q ss_pred CCCcEEEEEEEeCCCEEEee
Q 031924 36 SEEELTSVVLMKNGRKVVCG 55 (150)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~ 55 (150)
...+++.++|+||++.|++.
T Consensus 500 ~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 500 NGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred CCcccccceECCCCCEEEEE
Confidence 34578899999998887653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 150 | |||
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.97 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.97 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.97 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.97 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.97 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.97 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.97 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.97 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.97 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.97 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.97 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.97 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.96 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.96 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.96 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.96 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.96 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.96 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.96 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.96 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.95 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.95 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.95 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.95 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.95 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.95 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.95 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.95 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.95 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.95 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.95 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.95 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.95 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.95 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.95 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.95 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.95 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.95 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.94 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.94 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.94 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.94 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.94 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.94 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.94 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.94 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.94 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.94 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.94 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.94 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.94 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.94 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.94 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.94 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.94 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.94 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.94 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.94 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.94 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.94 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.93 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.93 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.93 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.93 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.93 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.93 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.93 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.93 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.93 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.93 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.93 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.93 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.93 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.93 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.93 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.93 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.93 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.92 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.92 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.92 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.92 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.92 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.92 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.92 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.92 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.92 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.92 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.92 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.92 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.91 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.91 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.91 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.91 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.91 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.91 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.91 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.9 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.9 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.89 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.89 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.88 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.87 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.86 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.85 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.83 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.83 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.83 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.79 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.79 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.78 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.77 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.76 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.76 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.75 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.74 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.74 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.72 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.72 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.71 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.71 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.71 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.7 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.7 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.69 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.69 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.69 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.69 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.68 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.68 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.68 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.66 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.66 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.66 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.66 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.65 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.65 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.63 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.62 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.61 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.59 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.58 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.57 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.56 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.56 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.53 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.53 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.52 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.52 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.5 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.5 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.5 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.47 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.43 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.43 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.41 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.41 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.39 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.38 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.38 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.37 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.36 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.36 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.36 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.35 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.34 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.33 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.33 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.31 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.29 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.29 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.28 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.28 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.26 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.26 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.24 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.23 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.23 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.21 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.18 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.16 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.15 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.13 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.13 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.12 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.12 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.08 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.07 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.06 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.96 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.96 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.96 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.92 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.92 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.91 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.9 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.9 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.88 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.88 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.88 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.83 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.83 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.82 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.8 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.8 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.79 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.77 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.77 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.76 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.76 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.74 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.71 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.7 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.7 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.7 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.68 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.68 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.58 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.51 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.51 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.5 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.46 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.43 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.42 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.39 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.38 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.37 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.36 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.36 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.36 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.32 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.3 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.24 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.23 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.22 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.19 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.15 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.06 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.02 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.0 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.97 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.91 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.83 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.82 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.7 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.7 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.7 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.6 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.59 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.58 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.55 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.53 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.51 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.47 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.46 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.41 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.39 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.3 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.29 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.24 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.21 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.19 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.16 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.15 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.1 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.99 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.98 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.97 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.94 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.94 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.93 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.93 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.91 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.84 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.84 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.84 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.83 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.76 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.6 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.54 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.52 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.52 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.43 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.41 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.33 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.3 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.29 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.28 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.27 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.15 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.06 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.05 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 95.97 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.93 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.9 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.86 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.76 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 95.75 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.73 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.65 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.65 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 95.53 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.3 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.28 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.27 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 95.07 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 95.03 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 95.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.91 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 94.62 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 93.82 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 93.57 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 93.48 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 93.08 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 92.95 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 92.42 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 92.28 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 92.23 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 92.02 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 90.17 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 90.09 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 89.75 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 88.63 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 88.48 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.3 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.52 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 85.37 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 85.25 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 84.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 84.18 | |
| 3f7f_A | 729 | Nucleoporin NUP120; nuclear pore complex, macromol | 83.73 | |
| 3f7f_A | 729 | Nucleoporin NUP120; nuclear pore complex, macromol | 82.83 |
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=179.57 Aligned_cols=145 Identities=12% Similarity=0.165 Sum_probs=135.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|++++|++++.|+.|++||+++++.+..+.+|..++.+++|+|++++|++++.|++|++||++ .++....+.+ |
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~-h 247 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ-HANLAGTLSG-H 247 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETT-TCCEEEEECC-C
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECC-CcceeEEEcC-C
Confidence 4789999999999999999999999999999999999999999999999999999999999999986 4466777888 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...|.++. +|++++|++++.|+.|++||+.+++++..+..|.. +|.+++|+|++++|++++.++.|.
T Consensus 248 ~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~-~v~~v~~s~~g~~l~s~~~d~~i~ 315 (321)
T 3ow8_A 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD-QVWGVKYNGNGSKIVSVGDDQEIH 315 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCCEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC-cEEEEEECCCCCEEEEEeCCCeEE
Confidence 99999988 88999999999999999999999999999988988 699999999999999999998875
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=174.27 Aligned_cols=145 Identities=14% Similarity=0.202 Sum_probs=132.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|++++|++++.|++|++||+++++.+..+..|..++.+++|+|++++|++|+.|++|++||+. .++....+.+ |
T Consensus 19 ~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~-~~~~~~~~~~-h 96 (304)
T 2ynn_A 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN-TGEKVVDFEA-H 96 (304)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT-TCCEEEEEEC-C
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC-CCcEEEEEeC-C
Confidence 5799999999999999999999999999888899999999999999999999999999999999986 4577778888 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCC-eeeeeccCCCCcceeEEEEcC-CccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLGIAS-VLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v~ 148 (150)
...|.++. +|+++++++++.|+.|++||++++ ...+.+..|.. .|.+++|+| ++.+|++|+.++.|.
T Consensus 97 ~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~~l~sgs~D~~v~ 166 (304)
T 2ynn_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-FVMCVAFNPKDPSTFASGCLDRTVK 166 (304)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCS-CEEEEEECTTCTTEEEEEETTSEEE
T ss_pred CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCC-cEEEEEECCCCCCEEEEEeCCCeEE
Confidence 99999998 889999999999999999999876 45677788888 699999999 679999999988764
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=170.80 Aligned_cols=145 Identities=12% Similarity=0.220 Sum_probs=134.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|++++|++++.|+.+++||+++++....+..+...+.+++|+|++++|++++.|+.|++||++ .++....+.+ |
T Consensus 128 ~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~-~~~~~~~~~~-h 205 (321)
T 3ow8_A 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA-TGKLLHTLEG-H 205 (321)
T ss_dssp EEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEECC-C
T ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECC-CCcEEEEEcc-c
Confidence 4789999999999999999999999998888888888999999999999999999999999999986 4577778888 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...|.++. +|++++|++++.|+.|++||+++++....+..|.. .|.+++|+|++++|++|+.++.|.
T Consensus 206 ~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVK 273 (321)
T ss_dssp SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEE
Confidence 99999988 89999999999999999999999998889989988 699999999999999999988764
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=177.16 Aligned_cols=145 Identities=14% Similarity=0.193 Sum_probs=134.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|+++++++++.|++|++||+.+++....+.+|.+.|.+++|+|++++|++|+.|++|++||+. ..+.+..+.+ |
T Consensus 114 ~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~-~~~~~~~~~~-h 191 (410)
T 1vyh_C 114 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ-GFECIRTMHG-H 191 (410)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT-SSCEEECCCC-C
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeEEEcC-C
Confidence 4799999999999999999999999999889999999999999999999999999999999999986 4477788888 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...|.++. +|+++++++++.|+.|++||+++++++..+..|.. .|..+.++|++.++++|+.++.|.
T Consensus 192 ~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-WVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCeEE
Confidence 99999988 88999999999999999999999999999989988 599999999999999999988764
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=170.78 Aligned_cols=146 Identities=12% Similarity=0.167 Sum_probs=129.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc-c
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-L 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-~ 79 (150)
++|+|+++++++++.|+.|++||+++++....+.+|...|.+++|+|++++|++++.|++|++||++.. +....+.. .
T Consensus 190 ~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~ 268 (340)
T 1got_B 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYSHDN 268 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTT
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-cEEEEEccCC
Confidence 468999999999999999999999999988899999999999999999999999999999999999643 43333331 0
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+...+.++. +|+++++++|+.|+.|++||+.+++.+..+..|.. +|.+++|+|+|.+|++|+.++.|.
T Consensus 269 ~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~s~D~~i~ 337 (340)
T 1got_B 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLK 337 (340)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEE
T ss_pred cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC-cEEEEEEcCCCCEEEEEcCCccEE
Confidence 334688877 89999999999999999999999988889989988 699999999999999999998875
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-30 Score=167.09 Aligned_cols=145 Identities=13% Similarity=0.196 Sum_probs=133.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|++++|++++.|+.|++|+..+++....+..|...+.+++|+|++++|++++.|+.|++||++ .++....+.+ |
T Consensus 29 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~-~ 106 (312)
T 4ery_A 29 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKCLKTLKG-H 106 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEEEC-C
T ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC-CCcEEEEEcC-C
Confidence 4799999999999999999999999998888889999999999999999999999999999999986 4567778888 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.++. +++++++++++.|+.|++||+++++.+..+..|.. +|.+++|+|+++++++|+.++.|.
T Consensus 107 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
T 4ery_A 107 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCR 174 (312)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCCcEE
Confidence 99999887 88999999999999999999999998889988887 699999999999999999988764
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-30 Score=167.99 Aligned_cols=144 Identities=18% Similarity=0.211 Sum_probs=130.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|++++|++++.|++|++||+++++....+.+|...|.+++|+|++.+|++++.|++|++||++ ++....+.+ |
T Consensus 71 ~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~--~~~~~~~~~-h 147 (319)
T 3frx_A 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLG-H 147 (319)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT--SCEEEEECC-C
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeEEEEec-c
Confidence 4689999999999999999999999999999999999999999999999999999999999999985 466677778 8
Q ss_pred ccceeEee-ec------CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KL------DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.++. .+ ++..+++++.|+.|++||+++.+....+..|.. +|.+++|+|++++|++|+.++.|.
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~ 221 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIM 221 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEE
Confidence 88888876 44 345899999999999999999988888888988 699999999999999999988764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=170.11 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=123.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCC-CEEEeecCCCeEEEEEcccccccccccc--
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFV-- 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~-- 77 (150)
++|+|++++|++++.|++|++||+++++.+..+.+|.+.|.+++|++++ ..|++++.|++|++||++. ++....+.
T Consensus 133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~ 211 (344)
T 4gqb_B 133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKPASQIGCS 211 (344)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS-SSCEEECC--
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc-cceeeeeecc
Confidence 4799999999999999999999999999999999999999999999987 4789999999999999964 34444443
Q ss_pred cccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCc-cEEEecccccccc
Q 031924 78 GLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVL-CFINSGFLSLNVN 148 (150)
Q Consensus 78 ~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~~~~v~ 148 (150)
. +...+.++. ++ +++++++|+.||.|++||+++++++..+..|.. +|.+++|+|++ ++|++|+.++.|.
T Consensus 212 ~-~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~ 283 (344)
T 4gqb_B 212 A-PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLA 283 (344)
T ss_dssp ---CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEE
T ss_pred e-eeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEE
Confidence 3 445677776 55 567899999999999999999999999999988 69999999998 5899999988775
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-30 Score=169.29 Aligned_cols=146 Identities=12% Similarity=0.153 Sum_probs=126.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee---eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-cccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ---TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRF 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~ 76 (150)
++|+|++++|++++.|++|++||++.++.. ....+|...|.+++|+|++++|++++.|+++++|+..... +....+
T Consensus 22 l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 101 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL 101 (345)
T ss_dssp EEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc
Confidence 579999999999999999999999887643 2236789999999999999999999999999999986432 456677
Q ss_pred ccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe---eeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 77 VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+ |...|.++. +|++++|++++.|+.|++||+..+. .+..+..|.. +|.+++|+|++++|++|+.++.|.
T Consensus 102 ~~-h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~i~ 175 (345)
T 3fm0_A 102 EG-HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ-DVKHVVWHPSQELLASASYDDTVK 175 (345)
T ss_dssp CC-CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS-CEEEEEECSSSSCEEEEETTSCEE
T ss_pred cC-CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC-CeEEEEECCCCCEEEEEeCCCcEE
Confidence 88 999999998 8999999999999999999997653 4566778877 699999999999999999988764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=167.72 Aligned_cols=146 Identities=15% Similarity=0.135 Sum_probs=127.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc--cccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRF 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~ 76 (150)
++|+|++++|++++.|+++++||...+. .+..+.+|...|.+++|+|++++|++++.|++|++||++... .....+
T Consensus 67 ~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 146 (345)
T 3fm0_A 67 VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL 146 (345)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence 4799999999999999999999998764 567788999999999999999999999999999999986432 334566
Q ss_pred ccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe--eeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 77 VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+ |...|.++. +|++++|++++.|+.|++||...++ ....+..|.. +|.+++|+|+|++|++|+.++.|.
T Consensus 147 ~~-h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~-~v~~l~~sp~g~~l~s~s~D~~v~ 219 (345)
T 3fm0_A 147 NS-HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES-TVWSLAFDPSGQRLASCSDDRTVR 219 (345)
T ss_dssp CC-CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred cC-cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC-ceEEEEECCCCCEEEEEeCCCeEE
Confidence 67 889999988 8899999999999999999998765 4567778888 699999999999999999988764
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=164.33 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=126.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|++++|++++.|++|++||+++++.+..+.+|.+.|.+++|+|++++|++|+.|++|++||++........+.+ |
T Consensus 61 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~-h 139 (304)
T 2ynn_A 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-H 139 (304)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC-C
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc-c
Confidence 368999999999999999999999999999999999999999999999999999999999999999754455667788 9
Q ss_pred ccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeecc-CCCCcceeEEEEcC--CccEEEecccccccc
Q 031924 81 PNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIA-EHSEYPIESLGIAS--VLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~s~~~~~~v~ 148 (150)
...|.++. +| ++..+++++.|+.|++||++.......+. .|.. ++..+.|+| ++.+|++|+.++.|.
T Consensus 140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~s~D~~i~ 211 (304)
T 2ynn_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER-GVNYVDYYPLPDKPYMITASDDLTIK 211 (304)
T ss_dssp CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTT-CEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcC-cEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence 99999988 66 67899999999999999998766554443 3434 689999986 788999999988764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=165.53 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=122.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC-------CeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc---
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK-------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--- 70 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~--- 70 (150)
++|+|++++|++++.|++|++||++. .+....+.+|...|.+++|+|++++|++++.|++|++||++..+
T Consensus 64 v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe
Confidence 47999999999999999999999853 34566778999999999999999999999999999999984332
Q ss_pred ccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCC--eeeeeccCCCCcceeEEEEcCC--ccEEEeccccc
Q 031924 71 DCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPN--RIIQPIAEHSEYPIESLGIASV--LCFINSGFLSL 145 (150)
Q Consensus 71 ~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~~~ 145 (150)
+....+.+ |...|.++. +|++++|++++.|+.|++||...+ +++..+..|.. +|.+++|+|+ +.+|++|+.++
T Consensus 144 ~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~D~ 221 (330)
T 2hes_X 144 ECISVLQE-HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG-TVWSSDFDKTEGVFRLCSGSDDS 221 (330)
T ss_dssp EEEEEECC-CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCSSSSCEEEEEETTS
T ss_pred EEEEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC-cEEEEEecCCCCeeEEEEEeCCC
Confidence 34556778 999999988 889999999999999999998766 57788888988 6999999998 77899999988
Q ss_pred ccc
Q 031924 146 NVN 148 (150)
Q Consensus 146 ~v~ 148 (150)
.|.
T Consensus 222 ~v~ 224 (330)
T 2hes_X 222 TVR 224 (330)
T ss_dssp CEE
T ss_pred eEE
Confidence 764
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=171.04 Aligned_cols=145 Identities=14% Similarity=0.222 Sum_probs=133.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC--------------------CCEEEeecCCCe
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN--------------------GRKVVCGSQSGT 60 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~d~~ 60 (150)
+.|+|+++++++++.|++|++||+.+++....+..|...+.+++|+|+ +.+|++|+.|++
T Consensus 240 ~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~ 319 (410)
T 1vyh_C 240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319 (410)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe
Confidence 357899999999999999999999999888889999999999999996 678999999999
Q ss_pred EEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEE
Q 031924 61 VLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 61 i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (150)
|++||++ .+.+...+.+ |...|.++. ++++++|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|++.+|+
T Consensus 320 i~iwd~~-~~~~~~~~~~-h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~ 396 (410)
T 1vyh_C 320 IKMWDVS-TGMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVV 396 (410)
T ss_dssp EEEEETT-TTEEEEEEEC-CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS-CEEEEEECSSSSCEE
T ss_pred EEEEECC-CCceEEEEEC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC-cEEEEEEcCCCCEEE
Confidence 9999986 4577788888 999999988 88999999999999999999999998899989988 699999999999999
Q ss_pred ecccccccc
Q 031924 140 SGFLSLNVN 148 (150)
Q Consensus 140 s~~~~~~v~ 148 (150)
+|+.++.|.
T Consensus 397 sgs~D~~i~ 405 (410)
T 1vyh_C 397 TGSVDQTVK 405 (410)
T ss_dssp EEETTSEEE
T ss_pred EEeCCCcEE
Confidence 999998875
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=168.10 Aligned_cols=146 Identities=11% Similarity=0.083 Sum_probs=114.0
Q ss_pred CeeecCcceEEEE--cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc---------
Q 031924 1 MTFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~--------- 69 (150)
++|+||+++++++ +.|++|++||+++++.+..+. |...|.+++|+|+|+++++++.++.+.+|.....
T Consensus 139 v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~ 217 (365)
T 4h5i_A 139 VYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFD 217 (365)
T ss_dssp EEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCC
T ss_pred EEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCC
Confidence 4799999998754 468999999999988776664 5667888888888888888876554444332110
Q ss_pred --------------------------------------c---ccccccccccccceeEee-ecCCCEEEEecCCCcEEEE
Q 031924 70 --------------------------------------K---DCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLV 107 (150)
Q Consensus 70 --------------------------------------~---~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~ 107 (150)
. .....+.+ |...|+++. +|++++|++|+.|+.|++|
T Consensus 218 ~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~Spdg~~lasgs~D~~V~iw 296 (365)
T 4h5i_A 218 KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-RFKGITSMDVDMKGELAVLASNDNSIALV 296 (365)
T ss_dssp TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES-SCSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC-CCCCeEeEEECCCCCceEEEcCCCEEEEE
Confidence 0 00112334 667788887 8999999999999999999
Q ss_pred eccCCeeeeec-cCCCCcceeEEEEcCCccEEEeccccccccC
Q 031924 108 GILPNRIIQPI-AEHSEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 108 d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
|+++++++..+ ..|.. +|++++|+|||++|||||.++.|+.
T Consensus 297 d~~~~~~~~~~~~gH~~-~V~~v~fSpdg~~laS~S~D~tvrv 338 (365)
T 4h5i_A 297 KLKDLSMSKIFKQAHSF-AITEVTISPDSTYVASVSAANTIHI 338 (365)
T ss_dssp ETTTTEEEEEETTSSSS-CEEEEEECTTSCEEEEEETTSEEEE
T ss_pred ECCCCcEEEEecCcccC-CEEEEEECCCCCEEEEEeCCCeEEE
Confidence 99999988875 67888 6999999999999999999988763
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-29 Score=162.01 Aligned_cols=146 Identities=14% Similarity=0.222 Sum_probs=130.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|++++|++++.|+.|++||+++++.+..+..|...+.+++|+|++++|++++.|+.|++||++ .++....+.. |
T Consensus 71 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~-~ 148 (312)
T 4ery_A 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPA-H 148 (312)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TCCEEEEECC-C
T ss_pred EEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCEEEEEecC-C
Confidence 4799999999999999999999999999998999999999999999999999999999999999996 4466777778 8
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.++. +++++++++++.|+.|++||+++++.+..+..+...++..++|+|+++++++++.++.|.
T Consensus 149 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 217 (312)
T 4ery_A 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence 88999888 889999999999999999999988877766444343699999999999999999888764
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=163.14 Aligned_cols=146 Identities=18% Similarity=0.258 Sum_probs=129.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc---ccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---DCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~---~~~~~~~ 77 (150)
++|+|++++|++++.|++|++||+.+++....+..|...+.+++|+|+++++++++.|+.+++|++.... +....+.
T Consensus 61 ~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~ 140 (340)
T 1got_B 61 MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 140 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEec
Confidence 4789999999999999999999999998888888999999999999999999999999999999986432 2345566
Q ss_pred cccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 78 GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 78 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+ |...+.++...++..+++++.|+.|++||+.+++.+..+..|.. +|.+++|+|+++++++|+.++.|.
T Consensus 141 ~-h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sg~~d~~v~ 209 (340)
T 1got_B 141 G-HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASAK 209 (340)
T ss_dssp C-CSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred C-CCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEE
Confidence 7 88899988744445689999999999999999999999988988 699999999999999999988764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=164.49 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=125.2
Q ss_pred eeec--CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc-
Q 031924 2 TFAA--DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (150)
Q Consensus 2 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~- 78 (150)
+|+| ++++|++++.|++|++||+++++.+..+..|...|.+++|+|++..|++++.|+++++||++.. +....+..
T Consensus 203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~~ 281 (354)
T 2pbi_B 203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-REVAIYSKE 281 (354)
T ss_dssp EECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCT
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCC
Confidence 4555 5789999999999999999999999889999999999999999999999999999999999643 33333332
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+...+.++. +++++++++++.|+.|++||+.+++.+..+..|.. +|.+++|+|+|++|++|+.++.|.
T Consensus 282 ~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~-~v~~l~~spdg~~l~sgs~D~~v~ 351 (354)
T 2pbi_B 282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN-RVSTLRVSPDGTAFCSGSWDHTLR 351 (354)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSCEEEEETTSEEE
T ss_pred CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC-cEEEEEECCCCCEEEEEcCCCCEE
Confidence 0234566776 88999999999999999999999988888889988 699999999999999999998775
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-29 Score=165.60 Aligned_cols=145 Identities=11% Similarity=0.120 Sum_probs=117.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCC-EEEeecCCCeEEEEEcccc----------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYF---------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~---------- 69 (150)
++|+|++++|++++.|+.|++||+++++.+..+..|...+.+++|++++. .+++++.|++|++||++..
T Consensus 145 v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~ 224 (357)
T 4g56_B 145 LSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA 224 (357)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecc
Confidence 47999999999999999999999999888777777777777777777653 5667777777777766421
Q ss_pred ----------------------------------cccccccccccccceeEee-ecCC-CEEEEecCCCcEEEEeccCCe
Q 031924 70 ----------------------------------KDCSDRFVGLSPNSVDALL-KLDE-DRVITGSENGLISLVGILPNR 113 (150)
Q Consensus 70 ----------------------------------~~~~~~~~~~~~~~v~~~~-~~~~-~~l~~~~~dg~i~~~d~~~~~ 113 (150)
++....+.+ |...|.++. +|++ ++|++++.|+.|++||+++++
T Consensus 225 ~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 225 SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV-HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred ccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec-cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 234445556 778888887 6766 578999999999999999998
Q ss_pred eeeeccCCCCcceeEEEEcC-CccEEEecccccccc
Q 031924 114 IIQPIAEHSEYPIESLGIAS-VLCFINSGFLSLNVN 148 (150)
Q Consensus 114 ~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v~ 148 (150)
.++.+ .|.+ +|++++|+| ++.+|++|+.++.|.
T Consensus 304 ~~~~~-~H~~-~V~~vafsP~d~~~l~s~s~Dg~v~ 337 (357)
T 4g56_B 304 VFRDL-SHRD-FVTGVAWSPLDHSKFTTVGWDHKVL 337 (357)
T ss_dssp EEEEC-CCSS-CEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EeEEC-CCCC-CEEEEEEeCCCCCEEEEEcCCCeEE
Confidence 88776 7888 699999998 899999999998774
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=165.43 Aligned_cols=144 Identities=17% Similarity=0.236 Sum_probs=125.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|++++|++++.|+.|++||+++++....+.+|...|.+++|+|++++|++++.|+++++||++. ++....+. +
T Consensus 129 v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~--~ 205 (393)
T 1erj_A 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSLTLS--I 205 (393)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEE--C
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-CeeEEEEE--c
Confidence 47899999999999999999999999998889999999999999999999999999999999999963 45555554 4
Q ss_pred ccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeec-------cCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPI-------AEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.++. ++ +++++++++.|+.|++||+++++.+..+ ..|.. .|.+++|+|++++|++|+.++.|.
T Consensus 206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~ 281 (393)
T 1erj_A 206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVK 281 (393)
T ss_dssp SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEE
Confidence 55677766 66 8899999999999999999988776665 45767 699999999999999999988764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=161.63 Aligned_cols=145 Identities=15% Similarity=0.117 Sum_probs=123.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc-cccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~ 79 (150)
++|+|+++++++++.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+..... ......+
T Consensus 82 ~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~- 160 (343)
T 2xzm_R 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKEN- 160 (343)
T ss_dssp EEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTS-
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccC-
Confidence 46899999999999999999999999999989999999999999999999999999999999999852211 1112235
Q ss_pred cccceeEee-ecCC----------CEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KLDE----------DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~~~----------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|...+.++. ++++ .++++++.|+.|++||. ..+....+..|.. +|.+++|+|+|++|++|+.++.|.
T Consensus 161 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~ 238 (343)
T 2xzm_R 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLL 238 (343)
T ss_dssp CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEE
T ss_pred CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEE
Confidence 778888887 6654 68999999999999994 5666677778888 699999999999999999988764
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=172.32 Aligned_cols=142 Identities=17% Similarity=0.240 Sum_probs=129.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|++++|++++.|+.|++||.. ++.+..+..|...+.+++|+|++++|++++.|+.|++||.. ++..+.+.+ |
T Consensus 432 ~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~~~~~~~~-h 507 (577)
T 2ymu_A 432 VAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTG-H 507 (577)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SCEEEEEEC-C
T ss_pred EEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CCEEEEEeC-C
Confidence 4789999999999999999999964 56777888999999999999999999999999999999963 577888888 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...|+++. +|++++|++++.|+.|++||. +++.+..+..|.+ +|.+++|+|||++|+|++.++.|.
T Consensus 508 ~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~-~v~~~~fs~dg~~l~s~~~D~~i~ 574 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVWGVAFSPDGQTIASASSDKTVK 574 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEE
T ss_pred CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCEEE
Confidence 99999998 899999999999999999996 6788888889988 699999999999999999988764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-28 Score=161.17 Aligned_cols=146 Identities=16% Similarity=0.290 Sum_probs=128.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe--CCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
+.|+|+++.|++++.|++|++||+++++.+..+.+|...+.+++|+| ++++|++|+.||++++||++ .++....+.+
T Consensus 160 ~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~-~~~~~~~~~~ 238 (354)
T 2pbi_B 160 CSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR-SGQCVQAFET 238 (354)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT-TCCEEEEECC
T ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC-CCcEEEEecC
Confidence 36889999999999999999999999999999999999999999987 47899999999999999996 4577778888
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCC-CcceeEEEEcCCccEEEecccccccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|...|.++. +|+++.|++++.|+.|++||++..+.+..+..+. ..++.+++|+|+++++++|+.++.|.
T Consensus 239 -h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~ 309 (354)
T 2pbi_B 239 -HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN 309 (354)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred -CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEE
Confidence 999999988 8899999999999999999999887766664332 23589999999999999999988765
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=164.63 Aligned_cols=144 Identities=19% Similarity=0.247 Sum_probs=120.9
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCC-CeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
.|+| +++++++++.|++|++||++. ++.+..+.+|...|.+++|+|++++|++++.|++|++||++. ++....+..
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~- 289 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYNR- 289 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT-TEEEEEECC-
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC-CcEEEEecc-
Confidence 4555 788999999999999999984 466778889999999999999999999999999999999964 344444432
Q ss_pred c-------ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec----cCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 80 S-------PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI----AEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 80 ~-------~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+ ...+.++. +++++++++|+.||.|++||+..++.+..+ ..|.. .|.+++|+|+|++|++|+.++.|
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG-RISCLGLSSDGSALCTGSWDKNL 368 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC-CCCEEEECSSSSEEEEECTTSCE
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC-ceEEEEECCCCCEEEEeeCCCCE
Confidence 2 22367777 899999999999999999999888766655 56777 69999999999999999999887
Q ss_pred c
Q 031924 148 N 148 (150)
Q Consensus 148 ~ 148 (150)
.
T Consensus 369 ~ 369 (380)
T 3iz6_a 369 K 369 (380)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-28 Score=161.20 Aligned_cols=145 Identities=15% Similarity=0.160 Sum_probs=120.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeee----eeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT----RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
++|+|++ .|++++.||+|++||+++++... ...+|.+.|++++|+|+|++|++|+.|++|++||++ .++.+..+
T Consensus 88 ~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~-~~~~~~~~ 165 (344)
T 4gqb_B 88 LTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA-QQVVLSSY 165 (344)
T ss_dssp EEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEE
T ss_pred EEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEEE
Confidence 4688885 67788999999999999886442 345799999999999999999999999999999996 45788888
Q ss_pred ccccccceeEee-ecCC-CEEEEecCCCcEEEEeccCCeeeeeccCC-CCcceeEEEEcC-CccEEEecccccccc
Q 031924 77 VGLSPNSVDALL-KLDE-DRVITGSENGLISLVGILPNRIIQPIAEH-SEYPIESLGIAS-VLCFINSGFLSLNVN 148 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~s~~~~~~v~ 148 (150)
.+ |...|.++. ++++ .++++++.|+.|++||+++++....+..+ ....+.+++|+| +++++++|+.++.|.
T Consensus 166 ~~-h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~ 240 (344)
T 4gqb_B 166 RA-HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS 240 (344)
T ss_dssp CC-CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred cC-cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence 89 999999988 6766 57899999999999999998877766422 222589999998 567899999888764
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=170.88 Aligned_cols=145 Identities=16% Similarity=0.149 Sum_probs=125.4
Q ss_pred CeeecCcc-eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc--
Q 031924 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-- 77 (150)
Q Consensus 1 i~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-- 77 (150)
++|+|+++ .|++++.|++|++||.++++....+.+|...|.+++|+|+|++|++++.|++|++||... ++....+.
T Consensus 153 v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~ 231 (611)
T 1nr0_A 153 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDD 231 (611)
T ss_dssp EEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCT
T ss_pred EEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC-CcEeeeeccc
Confidence 47899987 599999999999999999988888999999999999999999999999999999999853 34444442
Q ss_pred -----cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeee----------------------------------
Q 031924 78 -----GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQP---------------------------------- 117 (150)
Q Consensus 78 -----~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~---------------------------------- 117 (150)
+ |...|.++. +|++++|++++.|++|++||+.+++.+..
T Consensus 232 ~~~~~~-h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~ 310 (611)
T 1nr0_A 232 SLKNVA-HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 310 (611)
T ss_dssp TSSSCS-SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred cccccc-cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEe
Confidence 6 899999988 89999999999999999999987664432
Q ss_pred ---------ccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 118 ---------IAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 118 ---------~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+..|.. +|.+++|+|+|++|++++.++.|.
T Consensus 311 ~~~~~~~~~~~gh~~-~v~~l~~spdg~~l~s~s~D~~v~ 349 (611)
T 1nr0_A 311 PELGSIDQVRYGHNK-AITALSSSADGKTLFSADAEGHIN 349 (611)
T ss_dssp TTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCCcceEEcCCCC-CEEEEEEeCCCCEEEEEeCCCcEE
Confidence 335766 699999999999999999988764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=157.61 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=115.7
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCC--eeeeee-cc-CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc------cc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRS-EF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF------KD 71 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~------~~ 71 (150)
+|+|+ +|++++.|++|++||++.+ +....+ .. |...|.+++|+|++++|++++.|++|++||+... .+
T Consensus 21 ~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~ 98 (330)
T 2hes_X 21 DFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMD 98 (330)
T ss_dssp EEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCE
T ss_pred ccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccce
Confidence 46666 9999999999999999875 344444 34 8899999999999999999999999999998421 13
Q ss_pred cccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccC----CeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 72 CSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILP----NRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
....+.+ |...|.++. +|++++|++++.|+.|++||++. .+.+..+..|.. +|.+++|+|++.+|++|+.++.
T Consensus 99 ~~~~~~~-h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~ 176 (330)
T 2hes_X 99 LLAIIEG-HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ-DVKHVIWHPSEALLASSSYDDT 176 (330)
T ss_dssp EEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS-CEEEEEECSSSSEEEEEETTSC
T ss_pred eEEEEcC-CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC-ceEEEEECCCCCEEEEEcCCCe
Confidence 4456778 999999988 89999999999999999999943 246677888888 6999999999999999999887
Q ss_pred cc
Q 031924 147 VN 148 (150)
Q Consensus 147 v~ 148 (150)
|.
T Consensus 177 i~ 178 (330)
T 2hes_X 177 VR 178 (330)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=160.04 Aligned_cols=146 Identities=16% Similarity=0.224 Sum_probs=125.8
Q ss_pred eeecC-cceEEEEcCCCeEEEEEcCCCeeeeee-----ccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEccccccccc
Q 031924 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRS-----EFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (150)
Q Consensus 2 ~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~ 74 (150)
.|.|+ +..|++++.|++|++||+++++.+..+ .+|...+.+++|++ +++.|++|+.|++|++||++...+...
T Consensus 164 ~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~ 243 (380)
T 3iz6_a 164 QYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR 243 (380)
T ss_dssp BCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE
T ss_pred EEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE
Confidence 56775 557999999999999999999877655 56888999999987 789999999999999999975557777
Q ss_pred ccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCC------cceeEEEEcCCccEEEeccccccc
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE------YPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
.+.+ |...|.++. +|++++|++++.|+.|++||+++++.+..+..+.. ..+.+++|+|+|+++++|+.++.|
T Consensus 244 ~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i 322 (380)
T 3iz6_a 244 TYHG-HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC 322 (380)
T ss_dssp EECC-CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCE
T ss_pred EECC-cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCE
Confidence 8888 999999998 89999999999999999999999988777654322 138899999999999999998876
Q ss_pred c
Q 031924 148 N 148 (150)
Q Consensus 148 ~ 148 (150)
.
T Consensus 323 ~ 323 (380)
T 3iz6_a 323 Y 323 (380)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=154.76 Aligned_cols=146 Identities=15% Similarity=0.086 Sum_probs=122.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCC--eeeeeeccCCCcEEEEEEEeC--CCEEEeecCCCeEEEEEccccc-ccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~-~~~~~ 75 (150)
++|+|++++|++++.|++|++||++.+ +.+..+.+|.++|.+++|+++ +++|++++.|++|++||++... .....
T Consensus 15 ~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~ 94 (297)
T 2pm7_B 15 AVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAV 94 (297)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEE
Confidence 479999999999999999999999753 567788999999999999864 8999999999999999986332 34455
Q ss_pred cccccccceeEee-ecC--CCEEEEecCCCcEEEEeccCCe--eeeeccCCCCcceeEEEEcCC-------------ccE
Q 031924 76 FVGLSPNSVDALL-KLD--EDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLGIASV-------------LCF 137 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~--~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~-------------~~~ 137 (150)
+.+ |...|.++. +|+ +.+|++++.|+.|++||+++.. ....+..|.. +|.+++|+|+ +++
T Consensus 95 ~~~-h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~~~~ 172 (297)
T 2pm7_B 95 HAV-HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAPATIEEDGEHNGTKESRK 172 (297)
T ss_dssp ECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS-CEEEEEECCCC------------CCE
T ss_pred eec-CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC-ccceEeecCCcccccccCCCCCCcce
Confidence 667 888999888 665 7899999999999999998653 2345567877 6999999997 579
Q ss_pred EEecccccccc
Q 031924 138 INSGFLSLNVN 148 (150)
Q Consensus 138 l~s~~~~~~v~ 148 (150)
|++|+.++.|.
T Consensus 173 l~sgs~D~~v~ 183 (297)
T 2pm7_B 173 FVTGGADNLVK 183 (297)
T ss_dssp EEEEETTSCEE
T ss_pred EEEEcCCCcEE
Confidence 99999988764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=170.36 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=128.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc--ccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~ 78 (150)
++|+|++++|++++.|++|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||...... ......+
T Consensus 436 v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~ 515 (694)
T 3dm0_A 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEG 515 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTS
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCC
Confidence 47899999999999999999999999999889999999999999999999999999999999999752211 1122246
Q ss_pred ccccceeEee-ecCC--CEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 79 LSPNSVDALL-KLDE--DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|...|.++. ++++ ..+++++.|+.|++||+++++....+..|.. .|.+++|+|++++|++|+.++.|.
T Consensus 516 -h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~ 586 (694)
T 3dm0_A 516 -HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVL 586 (694)
T ss_dssp -CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCE
T ss_pred -CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEE
Confidence 788899887 6665 5899999999999999999998889989988 699999999999999999998775
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-27 Score=153.50 Aligned_cols=146 Identities=12% Similarity=0.136 Sum_probs=120.9
Q ss_pred Ceeec--CcceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeC--CCEEEeecCCCeEEEEEcccccc-cc
Q 031924 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKD-CS 73 (150)
Q Consensus 1 i~~~~--~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~-~~ 73 (150)
++|+| ++++|++++.|++|++||+++++ .+..+..|...|.+++|+|+ +.+|++++.|++|++||++.... ..
T Consensus 59 v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 59 VDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp EEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC
T ss_pred EEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee
Confidence 36765 38899999999999999998874 45566788999999999997 89999999999999999964322 23
Q ss_pred cccccccccceeEee-ecC-------------CCEEEEecCCCcEEEEeccCCe----eeeeccCCCCcceeEEEEcCCc
Q 031924 74 DRFVGLSPNSVDALL-KLD-------------EDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLGIASVL 135 (150)
Q Consensus 74 ~~~~~~~~~~v~~~~-~~~-------------~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~ 135 (150)
..+.+ |...+.++. +|+ +++|++++.|+.|++||+++++ ....+..|.. +|.+++|+|++
T Consensus 139 ~~~~~-h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~ 216 (297)
T 2pm7_B 139 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTV 216 (297)
T ss_dssp EEEEC-CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCC
T ss_pred eeeec-ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCC
Confidence 44567 888898887 554 5799999999999999998755 5567788988 69999999984
Q ss_pred ---cEEEecccccccc
Q 031924 136 ---CFINSGFLSLNVN 148 (150)
Q Consensus 136 ---~~l~s~~~~~~v~ 148 (150)
.+|++|+.++.|.
T Consensus 217 ~~~~~las~s~D~~v~ 232 (297)
T 2pm7_B 217 LLRSYMASVSQDRTCI 232 (297)
T ss_dssp SSSEEEEEEETTSCEE
T ss_pred CCceEEEEEECCCcEE
Confidence 8999999988764
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=159.98 Aligned_cols=146 Identities=16% Similarity=0.250 Sum_probs=125.5
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCeeeeee-------ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc---
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRS-------EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--- 69 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~--- 69 (150)
++|+| ++++|++++.|+.|++||+++++.+..+ .+|...|.+++|+|++++|++++.|++|++||++..
T Consensus 212 ~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~ 291 (393)
T 1erj_A 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291 (393)
T ss_dssp EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCc
Confidence 36788 8999999999999999999998776655 568889999999999999999999999999998632
Q ss_pred --------cccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC------C
Q 031924 70 --------KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS------V 134 (150)
Q Consensus 70 --------~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~------~ 134 (150)
+.+...+.+ |...+.++. ++++.+|++++.|+.|++||..+++.+..+..|.. +|.+++|++ +
T Consensus 292 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~-~v~~v~~~~~~~~~p~ 369 (393)
T 1erj_A 292 SDSKTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-SVISVAVANGSSLGPE 369 (393)
T ss_dssp ---------CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSCTTCTT
T ss_pred ccccCCCCCcceEEEec-ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC-CEEEEEecCCcCcCCC
Confidence 123345667 888898888 88999999999999999999999999999989988 699999886 7
Q ss_pred ccEEEecccccccc
Q 031924 135 LCFINSGFLSLNVN 148 (150)
Q Consensus 135 ~~~l~s~~~~~~v~ 148 (150)
+++|++|+.++.|.
T Consensus 370 ~~~l~sgs~Dg~i~ 383 (393)
T 1erj_A 370 YNVFATGSGDCKAR 383 (393)
T ss_dssp CEEEEEEETTSEEE
T ss_pred CCEEEEECCCCcEE
Confidence 89999999998775
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=164.55 Aligned_cols=146 Identities=13% Similarity=0.116 Sum_probs=121.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCC--eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc--cccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRF 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~ 76 (150)
++|+|++++|++++.|+.|++||+.++ +....+..|...|.+++|+|++++|++++.|++|++||+.... .....+
T Consensus 17 ~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~ 96 (377)
T 3dwl_C 17 HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL 96 (377)
T ss_dssp CEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC
T ss_pred EEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe
Confidence 589999999999999999999999988 6777888999999999999999999999999999999986432 134556
Q ss_pred ccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe---eeeeccC-CCCcceeEEEEcCCccEEEecccccccc
Q 031924 77 VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR---IIQPIAE-HSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.. |...+.++. ++++++|++++.|+.|++||+++++ ....+.. |.. +|.+++|+|++++|++|+.++.|.
T Consensus 97 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~d~~i~ 171 (377)
T 3dwl_C 97 LR-LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS-TILSLDWHPNNVLLAAGCADRKAY 171 (377)
T ss_dssp CC-CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS-CEEEEEECTTSSEEEEEESSSCEE
T ss_pred cc-cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC-CeEEEEEcCCCCEEEEEeCCCEEE
Confidence 67 889999998 8899999999999999999998776 3566666 777 699999999999999999988764
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-27 Score=155.10 Aligned_cols=144 Identities=13% Similarity=0.072 Sum_probs=111.5
Q ss_pred eeec---CcceEEEEcCCCeEEEEEcCCCeeeeeeccCC---CcEEEEEEEeCCCEE------------EeecCCCeEEE
Q 031924 2 TFAA---DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE---EELTSVVLMKNGRKV------------VCGSQSGTVLL 63 (150)
Q Consensus 2 ~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~d~~i~i 63 (150)
+|+| ++++|++++.|++|++||+++++.+..+.++. ..+.+++|+|+|.++ ++|+.|+++++
T Consensus 185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl 264 (356)
T 2w18_A 185 TFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV 264 (356)
T ss_dssp EEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred EeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence 5667 67899999999999999999999988887643 367788999999886 56788999999
Q ss_pred EEccccccccccc-----ccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEE
Q 031924 64 YSWGYFKDCSDRF-----VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFI 138 (150)
Q Consensus 64 ~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (150)
||.. .++.+..+ .+ |.....+. ...+.++++++.|++|++||+.++++++++..|.+..+..++|+|||++|
T Consensus 265 Wd~~-tgk~l~v~~~~~p~G-h~~~~lsg-~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~L 341 (356)
T 2w18_A 265 INPK-TTLSVGVMLYCLPPG-QAGRFLEG-DVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHL 341 (356)
T ss_dssp EETT-TTEEEEEEEECCCTT-CCCCEEEE-EEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred EECC-CCEEEEEEEeeccCC-CcceeEcc-ccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence 9985 44544333 24 54443222 33478899999999999999999999999988877435568999999999
Q ss_pred Eecccccccc
Q 031924 139 NSGFLSLNVN 148 (150)
Q Consensus 139 ~s~~~~~~v~ 148 (150)
++|+.++.|.
T Consensus 342 aSGS~D~TIk 351 (356)
T 2w18_A 342 LAGQKDGNIF 351 (356)
T ss_dssp EEECTTSCEE
T ss_pred EEEECCCcEE
Confidence 9999999875
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-27 Score=158.68 Aligned_cols=146 Identities=10% Similarity=0.094 Sum_probs=128.0
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCC-------eeeeeeccCCCcEEEEEEEeCC-CEEEeecCCCeEEEEEcccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
++|+| ++++|++++.|+.|++||+.++ +.+..+.+|...|.+++|+|++ +.|++++.|+.|++||++. ++
T Consensus 87 ~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~ 165 (402)
T 2aq5_A 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-GA 165 (402)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT-TE
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-CC
Confidence 47899 8999999999999999999987 5567788999999999999997 6999999999999999964 46
Q ss_pred ccccc--ccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec-cCCCCcceeEEEEcCCccEEEec---ccc
Q 031924 72 CSDRF--VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLGIASVLCFINSG---FLS 144 (150)
Q Consensus 72 ~~~~~--~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~---~~~ 144 (150)
....+ .. |...+.++. ++++++|++++.|+.|++||+++++.+..+ ..|.+..+.+++|+|+++++++| +.+
T Consensus 166 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d 244 (402)
T 2aq5_A 166 AVLTLGPDV-HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSE 244 (402)
T ss_dssp EEEEECTTT-CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCC
T ss_pred ccEEEecCC-CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCC
Confidence 66677 67 889999988 889999999999999999999999988887 67776448999999999999998 566
Q ss_pred cccc
Q 031924 145 LNVN 148 (150)
Q Consensus 145 ~~v~ 148 (150)
+.|.
T Consensus 245 ~~i~ 248 (402)
T 2aq5_A 245 RQVA 248 (402)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 6553
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=166.76 Aligned_cols=144 Identities=19% Similarity=0.147 Sum_probs=122.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCee--eeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc--c
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--F 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~ 76 (150)
++|+|++++|++++.|++|++||+..++. ... ..|...|++++|+|+|++|++++.|+++++|++...++.... +
T Consensus 454 va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~ 532 (611)
T 1nr0_A 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW 532 (611)
T ss_dssp EEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC
T ss_pred EEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeee
Confidence 47899999999999999999999987653 233 678899999999999999999999999999998642444433 4
Q ss_pred ccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe-ee-eeccCC-CCcceeEEEEcCCccEEEecccccccc
Q 031924 77 VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR-II-QPIAEH-SEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~-~~-~~~~~~-~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+ |...|.++. +|++++|++++.|+.|++||+.++. .. ..+..| .. .|.+++|+|+++ |++++.++.|.
T Consensus 533 ~~-H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~-~v~~v~fs~d~~-l~s~~~D~~i~ 605 (611)
T 1nr0_A 533 TF-HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS-SVNSVIWLNETT-IVSAGQDSNIK 605 (611)
T ss_dssp CC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTS-CEEEEEEEETTE-EEEEETTSCEE
T ss_pred ee-cccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCccc-CeeEEEEcCCCE-EEEecCCCCEE
Confidence 45 889999998 8999999999999999999998754 33 566678 56 699999999999 99999988764
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=164.49 Aligned_cols=142 Identities=16% Similarity=0.226 Sum_probs=128.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|++++|++++.|+.|++||. +++.+..+..|...+.+++|+|++++|++++.|+.+++||.. ++....+.+ |
T Consensus 391 ~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~-~ 466 (577)
T 2ymu_A 391 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQLLQTLTG-H 466 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SCEEEEEEC-C
T ss_pred EEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CCEEEEEcC-C
Confidence 478999999999999999999995 466777888999999999999999999999999999999964 567777888 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.++. +|++++|++++.|+.|++||. +++.++.+..|.. +|++++|+|+|++|++++.++.|.
T Consensus 467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~-~v~~l~~s~dg~~l~s~~~dg~v~ 533 (577)
T 2ymu_A 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVK 533 (577)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCC-CEEEEEEcCCCCEEEEEECcCEEE
Confidence 99999988 899999999999999999995 6788888889988 699999999999999999988764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=159.28 Aligned_cols=145 Identities=14% Similarity=0.176 Sum_probs=126.7
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
.|+|++++|++++.|+.|++||+++++....+..|...|.+++|+|++++|++++.|+.|++||++ .++....+.+ |.
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~-h~ 181 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DGSNPRTLIG-HR 181 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCCCEEEEC-CS
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC-CCcCceEEcC-CC
Confidence 478999999999999999999999998888878999999999999999999999999999999996 4567778888 99
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCC---C--------------------cceeEEEEcCCccE
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHS---E--------------------YPIESLGIASVLCF 137 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---~--------------------~~i~~~~~~~~~~~ 137 (150)
..|.++. ++++++|++++.|+.|++||+++++.+..+..+. . .++.+++|+|++++
T Consensus 182 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 182 ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE
Confidence 9999988 8899999999999999999999998888776432 1 13555566899999
Q ss_pred EEecccccccc
Q 031924 138 INSGFLSLNVN 148 (150)
Q Consensus 138 l~s~~~~~~v~ 148 (150)
+++|+.++.|.
T Consensus 262 l~~~~~dg~i~ 272 (420)
T 3vl1_A 262 VIAGHVSGVIT 272 (420)
T ss_dssp EEEEETTSCEE
T ss_pred EEEEcCCCeEE
Confidence 99999988764
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=155.18 Aligned_cols=146 Identities=16% Similarity=0.133 Sum_probs=122.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEe--CCCEEEeecCCCeEEEEEccccc-ccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~~-~~~~~ 75 (150)
++|+|++++|++++.|++|++||+++++ .+..+.+|.+.|.+++|++ ++++|++++.|++|++||++... .....
T Consensus 19 v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~ 98 (316)
T 3bg1_A 19 AQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE 98 (316)
T ss_dssp EEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEE
T ss_pred eeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEE
Confidence 4799999999999999999999998875 4567889999999999986 48999999999999999986422 34456
Q ss_pred cccccccceeEee-ecC--CCEEEEecCCCcEEEEeccCCe---eeeeccCCCCcceeEEEEcCC---------------
Q 031924 76 FVGLSPNSVDALL-KLD--EDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLGIASV--------------- 134 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~--~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~i~~~~~~~~--------------- 134 (150)
+.+ |...|.++. +|+ +.+|++++.|+.|++||++.+. ....+..|.. ++.+++|+|+
T Consensus 99 ~~~-h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~ 176 (316)
T 3bg1_A 99 HAG-HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI-GCNAVSWAPAVVPGSLIDHPSGQKP 176 (316)
T ss_dssp ECC-CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS-CBCCCEECCCCCC------CCSCCC
T ss_pred ccC-CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC-CcceEEEccccCCccccccccccCc
Confidence 677 899999988 666 7899999999999999998653 2455567777 6999999997
Q ss_pred --ccEEEecccccccc
Q 031924 135 --LCFINSGFLSLNVN 148 (150)
Q Consensus 135 --~~~l~s~~~~~~v~ 148 (150)
+++|++|+.++.|.
T Consensus 177 ~~~~~l~sgs~D~~v~ 192 (316)
T 3bg1_A 177 NYIKRFASGGCDNLIK 192 (316)
T ss_dssp CCCCBEECCBTTSBCC
T ss_pred cccceEEEecCCCeEE
Confidence 47899999988764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=160.48 Aligned_cols=143 Identities=14% Similarity=0.156 Sum_probs=120.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe---eeeeecc-CCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc--------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-------- 68 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~-------- 68 (150)
++|+|++++|++++.|+.|++||++.++ ....+.. |...+.+++|+|++++|++++.|+.+++||++.
T Consensus 106 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 106 VRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp EECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred EEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence 4789999999999999999999999876 3566666 899999999999999999999999999999841
Q ss_pred ---------ccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCee----eeeccCCCCcceeEEEEcCC
Q 031924 69 ---------FKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRI----IQPIAEHSEYPIESLGIASV 134 (150)
Q Consensus 69 ---------~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~~~~i~~~~~~~~ 134 (150)
.++....+ + |...+.++. +|++++|++++.|+.|++||+.+++. +..+..|.. +|.+++|+|+
T Consensus 186 ~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~ 262 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCAEY-P-SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANE 262 (377)
T ss_dssp SCSSCSCCCEEEEEECC-C-CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEET
T ss_pred ccccccccchhhhhhcc-c-CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCC
Confidence 23455555 6 889999988 89999999999999999999998876 777878877 6999999999
Q ss_pred ccEEEecccccc
Q 031924 135 LCFINSGFLSLN 146 (150)
Q Consensus 135 ~~~l~s~~~~~~ 146 (150)
+++|++|+.+..
T Consensus 263 ~~~l~~~~~~~~ 274 (377)
T 3dwl_C 263 SAIVAAGYNYSP 274 (377)
T ss_dssp TEEEEEESSSSE
T ss_pred CCEEEEEcCCcE
Confidence 999999976543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=152.50 Aligned_cols=144 Identities=19% Similarity=0.175 Sum_probs=124.3
Q ss_pred CeeecCc-ceEEEEcCCCeEEEEEcCC-----CeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccc
Q 031924 1 MTFAADA-MKLLGTSGDGTLSVCNLRK-----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (150)
Q Consensus 1 i~~~~~~-~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~ 74 (150)
++|+|++ ++|++++.|++|++|++.. +..+..+.+|...|.+++|+|++++|++++.|++|++||++ .++...
T Consensus 23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~-~~~~~~ 101 (319)
T 3frx_A 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA-TGETYQ 101 (319)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEE
T ss_pred EEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC-CCCeeE
Confidence 4688864 8999999999999999864 23456788999999999999999999999999999999996 457778
Q ss_pred ccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCC------ccEEEeccccccc
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASV------LCFINSGFLSLNV 147 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~s~~~~~~v 147 (150)
.+.+ |...|.++. +++++++++++.|+.|++||++ ++.+..+..|.. .+.+++|+|. +.++++++.++.|
T Consensus 102 ~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~l~s~~~d~~i 178 (319)
T 3frx_A 102 RFVG-HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMV 178 (319)
T ss_dssp EEEC-CSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSS-CEEEEEECCC------CCEEEEEETTSCE
T ss_pred EEcc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCC-cEEEEEEccCCCCCCCccEEEEEeCCCEE
Confidence 8888 999999998 8899999999999999999996 456677778888 5999999985 4489999988876
Q ss_pred c
Q 031924 148 N 148 (150)
Q Consensus 148 ~ 148 (150)
.
T Consensus 179 ~ 179 (319)
T 3frx_A 179 K 179 (319)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=152.13 Aligned_cols=146 Identities=17% Similarity=0.180 Sum_probs=123.3
Q ss_pred Ceeec--CcceEEEEcCCCeEEEEEcCCC---------eeeeeeccCCCcEEEEEEEeC--CCEEEeecCCCeEEEEEcc
Q 031924 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKN---------TVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 1 i~~~~--~~~~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~ 67 (150)
++|+| ++++|++++.|+.|++||++.+ +....+..|...+.+++|+|+ +.++++++.||.|++||++
T Consensus 63 ~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 63 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred EEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 46888 6899999999999999999886 456777889999999999999 9999999999999999975
Q ss_pred cccc-----------------------------------------------------------cccccccccccceeEee
Q 031924 68 YFKD-----------------------------------------------------------CSDRFVGLSPNSVDALL 88 (150)
Q Consensus 68 ~~~~-----------------------------------------------------------~~~~~~~~~~~~v~~~~ 88 (150)
.... ....+.+ |...|.++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~ 221 (351)
T 3f3f_A 143 EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG-HKSLIRSIS 221 (351)
T ss_dssp STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCC-CCSCEEEEE
T ss_pred ChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCC-CCcceeEEE
Confidence 3210 1233446 788888888
Q ss_pred -ecCC----CEEEEecCCCcEEEEeccCC----------------------------------------------eeeee
Q 031924 89 -KLDE----DRVITGSENGLISLVGILPN----------------------------------------------RIIQP 117 (150)
Q Consensus 89 -~~~~----~~l~~~~~dg~i~~~d~~~~----------------------------------------------~~~~~ 117 (150)
++++ ++|++++.||.|++||++.+ +.+..
T Consensus 222 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (351)
T 3f3f_A 222 WAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE 301 (351)
T ss_dssp ECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEE
T ss_pred ECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE
Confidence 7777 79999999999999999764 56667
Q ss_pred ccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 118 IAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 118 ~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+..|.. +|.+++|+|++++|++|+.++.|.
T Consensus 302 ~~~h~~-~v~~~~~s~~~~~l~s~~~dg~v~ 331 (351)
T 3f3f_A 302 HDDHNG-EVWSVSWNLTGTILSSAGDDGKVR 331 (351)
T ss_dssp ECTTSS-CEEEEEECSSSCCEEEEETTSCEE
T ss_pred Eecccc-cEEEEEEcCCCCEEEEecCCCcEE
Confidence 778878 699999999999999999998774
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-26 Score=151.42 Aligned_cols=146 Identities=15% Similarity=0.156 Sum_probs=121.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCC----eeeeeeccCCCcEEEEEEEe--CCCEEEeecCCCeEEEEEccccc----
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK---- 70 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~~---- 70 (150)
++|+|++++|++++.|+.|++||+.++ +....+..|...|.+++|+| ++++|++++.||.|++||++...
T Consensus 17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~ 96 (351)
T 3f3f_A 17 VVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS 96 (351)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS
T ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc
Confidence 579999999999999999999999876 35667788999999999999 69999999999999999996432
Q ss_pred ----ccccccccccccceeEee-ecC--CCEEEEecCCCcEEEEeccCCee-----------------------------
Q 031924 71 ----DCSDRFVGLSPNSVDALL-KLD--EDRVITGSENGLISLVGILPNRI----------------------------- 114 (150)
Q Consensus 71 ----~~~~~~~~~~~~~v~~~~-~~~--~~~l~~~~~dg~i~~~d~~~~~~----------------------------- 114 (150)
+....+.. |...+.++. .++ ++++++++.||.|++||+++++.
T Consensus 97 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (351)
T 3f3f_A 97 GRRWNKLCTLND-SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW 175 (351)
T ss_dssp SCSEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE
T ss_pred ccCcceeeeecc-cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEe
Confidence 33555667 889999988 777 89999999999999999865431
Q ss_pred -------------------------------eeeccCCCCcceeEEEEcCCc----cEEEecccccccc
Q 031924 115 -------------------------------IQPIAEHSEYPIESLGIASVL----CFINSGFLSLNVN 148 (150)
Q Consensus 115 -------------------------------~~~~~~~~~~~i~~~~~~~~~----~~l~s~~~~~~v~ 148 (150)
+..+..|.. +|.+++|+|++ ++|++|+.++.|.
T Consensus 176 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 176 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 334445666 59999999998 8899999888764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=152.42 Aligned_cols=142 Identities=16% Similarity=0.185 Sum_probs=120.5
Q ss_pred ec-CcceEEEEcCCCeEEEEEcCCC-------eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc
Q 031924 4 AA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 4 ~~-~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
++ ++++|++++.|++|++||+..+ .....+.+|...|.+++|+|++.++++++.|++|++||++ .++....
T Consensus 35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~-~~~~~~~ 113 (343)
T 2xzm_R 35 ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLR-TGTTYKR 113 (343)
T ss_dssp TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETT-SSCEEEE
T ss_pred cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECC-CCcEEEE
Confidence 55 8899999999999999999753 3456778999999999999999999999999999999996 4577778
Q ss_pred cccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeee--ccCCCCcceeEEEEcCCc----------cEEEecc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQP--IAEHSEYPIESLGIASVL----------CFINSGF 142 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~----------~~l~s~~ 142 (150)
+.+ |...|.++. +|++++|++++.|+.|++||+........ ...|.. .|.+++|+|++ .++++++
T Consensus 114 ~~~-h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~l~s~~ 191 (343)
T 2xzm_R 114 FVG-HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSD-WVSCVRYSPIMKSANKVQPFAPYFASVG 191 (343)
T ss_dssp EEC-CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSS-CEEEEEECCCCCSCSCCCSSCCEEEEEE
T ss_pred EcC-CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCc-eeeeeeeccccccccccCCCCCEEEEEc
Confidence 888 999999988 89999999999999999999974433222 225666 59999999987 7899999
Q ss_pred cccccc
Q 031924 143 LSLNVN 148 (150)
Q Consensus 143 ~~~~v~ 148 (150)
.++.|.
T Consensus 192 ~d~~i~ 197 (343)
T 2xzm_R 192 WDGRLK 197 (343)
T ss_dssp TTSEEE
T ss_pred CCCEEE
Confidence 888764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-27 Score=158.23 Aligned_cols=146 Identities=18% Similarity=0.281 Sum_probs=121.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc--
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-- 78 (150)
++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.+++||++. ++....+..
T Consensus 145 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~ 223 (420)
T 3vl1_A 145 LKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT-GTTIHTFNRKE 223 (420)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECBTT
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC-CceeEEeecCC
Confidence 47999999999999999999999999988888899999999999999999999999999999999863 355554442
Q ss_pred cccccee---------------------Eee-ecCCCEEEEecCCCcEEEEeccCCeeeeecc-CCCCcceeEEEEcCCc
Q 031924 79 LSPNSVD---------------------ALL-KLDEDRVITGSENGLISLVGILPNRIIQPIA-EHSEYPIESLGIASVL 135 (150)
Q Consensus 79 ~~~~~v~---------------------~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~ 135 (150)
.+...+. ++. +++++++++++.||.|++||+++++.+..+. .|.. ++.+++|+|++
T Consensus 224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~ 302 (420)
T 3vl1_A 224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC-SCNSLTVDGNN 302 (420)
T ss_dssp BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSS-CEEEEEECSSC
T ss_pred CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCC-CceeEEEeCCC
Confidence 0223333 333 5788899999999999999999887666654 4556 69999999999
Q ss_pred c-EEEecccccccc
Q 031924 136 C-FINSGFLSLNVN 148 (150)
Q Consensus 136 ~-~l~s~~~~~~v~ 148 (150)
. +|++|+.++.|.
T Consensus 303 ~~~l~~g~~dg~i~ 316 (420)
T 3vl1_A 303 ANYIYAGYENGMLA 316 (420)
T ss_dssp TTEEEEEETTSEEE
T ss_pred CCEEEEEeCCCeEE
Confidence 9 999999988764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=166.85 Aligned_cols=145 Identities=14% Similarity=0.205 Sum_probs=132.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|++++|++++.||.|++||+.+++.+..+..|...+.+++|+|++++|++++.||.|++||+. .++....+.+ |
T Consensus 19 i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~-~~~~~~~~~~-~ 96 (814)
T 3mkq_A 19 IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN-TGEKVVDFEA-H 96 (814)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT-TCCEEEEEEC-C
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCcEEEEEec-C
Confidence 5799999999999999999999999999999999999999999999999999999999999999986 4577778888 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCC-eeeeeccCCCCcceeEEEEcC-CccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLGIAS-VLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v~ 148 (150)
...+.++. +++++.+++++.||.|++||+.++ .....+..|.. +|.+++|+| ++..+++++.++.|.
T Consensus 97 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~~dg~v~ 166 (814)
T 3mkq_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-FVMCVAFNPKDPSTFASGCLDRTVK 166 (814)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEE
T ss_pred CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC-cEEEEEEEcCCCCEEEEEeCCCeEE
Confidence 99999988 889999999999999999999876 66777778877 699999999 899999999888764
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=172.47 Aligned_cols=145 Identities=12% Similarity=0.119 Sum_probs=133.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|+++++++++.||+|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||+. .++....+.+ |
T Consensus 621 ~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~-~ 698 (1249)
T 3sfz_A 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA-TGKLVHTYDE-H 698 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEEEC-C
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC-CCceEEEEcC-C
Confidence 4799999999999999999999999999999999999999999999999999999999999999996 4577888888 9
Q ss_pred ccceeEee-ec--CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KL--DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.++. ++ ++..+++++.|+.|++||+.+++....+..|.. +|.+++|+|+++++++|+.++.|.
T Consensus 699 ~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~dg~v~ 768 (1249)
T 3sfz_A 699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN-SVNHCRFSPDDELLASCSADGTLR 768 (1249)
T ss_dssp SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS-CEEEEEECSSTTEEEEEESSSEEE
T ss_pred CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCC-CEEEEEEecCCCEEEEEECCCeEE
Confidence 99999888 56 556899999999999999999999999989988 699999999999999999988764
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-26 Score=151.47 Aligned_cols=144 Identities=13% Similarity=0.075 Sum_probs=120.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEE--EeCCCEEEeecCCCeEEEEEccccc--------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVL--MKNGRKVVCGSQSGTVLLYSWGYFK-------- 70 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~i~~~~~~~-------- 70 (150)
++|+|++++|++++.|+.|++||+++++... ...|...+.+++| ++++++|++++.|+.|++||++...
T Consensus 92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred EEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC
Confidence 4799999999999999999999999987665 5668899999999 8889999999999999999975321
Q ss_pred --------------------------------------------------------------------------------
Q 031924 71 -------------------------------------------------------------------------------- 70 (150)
Q Consensus 71 -------------------------------------------------------------------------------- 70 (150)
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~ 250 (368)
T 3mmy_A 171 ERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP 250 (368)
T ss_dssp SCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH
T ss_pred CCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc
Confidence
Q ss_pred -cccccccccccc------------ceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc
Q 031924 71 -DCSDRFVGLSPN------------SVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC 136 (150)
Q Consensus 71 -~~~~~~~~~~~~------------~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (150)
.....+.+ |.. .+.++. ++++++|++++.||.|++||+.+++.+..+..|.. +|.+++|+|+|+
T Consensus 251 ~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~ 328 (368)
T 3mmy_A 251 AKDNFTFKC-HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ-PISACCFNHNGN 328 (368)
T ss_dssp HHHSEEEEC-SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS-CEEEEEECTTSS
T ss_pred cccceeeee-eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC-CceEEEECCCCC
Confidence 00111122 222 577777 88999999999999999999999999999988888 699999999999
Q ss_pred EEEeccccccc
Q 031924 137 FINSGFLSLNV 147 (150)
Q Consensus 137 ~l~s~~~~~~v 147 (150)
+|++|+.++..
T Consensus 329 ~l~~~s~d~~~ 339 (368)
T 3mmy_A 329 IFAYASSYDWS 339 (368)
T ss_dssp CEEEEECCCST
T ss_pred eEEEEeccccc
Confidence 99999887644
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=157.18 Aligned_cols=144 Identities=13% Similarity=0.145 Sum_probs=115.6
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCee--eeeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEccccccccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
|+|+| ++++|++|+.||.|++||+.+++. ...+.+|.+.|++++|+| ++++|++++.||+|++||++. .....+
T Consensus 125 l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~--~~~~~~ 202 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG--NILRVF 202 (435)
T ss_dssp EEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS--CEEEEE
T ss_pred EEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC--CceeEE
Confidence 57999 567999999999999999987653 345568999999999998 689999999999999999863 222222
Q ss_pred ccc--cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc-EEEecccccccc
Q 031924 77 VGL--SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC-FINSGFLSLNVN 148 (150)
Q Consensus 77 ~~~--~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~~~~v~ 148 (150)
... +...+.++. ++++++|++|+.||.|++||++ ++.+..+..|.. +|.+++|+|++. ++++|+.++.|.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~-~v~~v~~~p~~~~~~~s~s~d~~v~ 276 (435)
T 4e54_B 203 ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKK-KVTHVALNPCCDWFLATASVDQTVK 276 (435)
T ss_dssp ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSS-CEEEEEECTTCSSEEEEEETTSBCC
T ss_pred eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccc-eEEeeeecCCCceEEEEecCcceee
Confidence 210 233455666 8899999999999999999986 456677778888 699999999876 788998888764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-27 Score=163.19 Aligned_cols=144 Identities=10% Similarity=0.081 Sum_probs=120.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe-eeeeeccCCCcEEEE--EEEeCC-CEEEeecCCCeEEEEEccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSV--VLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
++|+|+ ..|++|+.||+|++||+++++ +...+..|...|.++ .|+|++ .+|++++.|++|++||++. ++....+
T Consensus 272 v~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~-~~~~~~~ 349 (524)
T 2j04_B 272 FDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD-IATTKTT 349 (524)
T ss_dssp EEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG-HHHHCEE
T ss_pred EEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC-CCccccc
Confidence 367775 479999999999999998764 445678899999999 567887 8999999999999999963 3555555
Q ss_pred cccccc--ceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 77 VGLSPN--SVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 77 ~~~~~~--~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+ |.. .+.++. +|+++.+++++.|+.|++||++++.++..+..|.. +|.+++|+|+|++|++|+.++.|.
T Consensus 350 ~~-~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~ 422 (524)
T 2j04_B 350 VS-RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET-TITAIGVSRLHPMVLAGSADGSLI 422 (524)
T ss_dssp EE-ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS-CEEEEECCSSCCBCEEEETTTEEE
T ss_pred cc-ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC-ceEEEEeCCCCCeEEEEECCCEEE
Confidence 55 543 366666 88899999999999999999999888777878988 699999999999999999998875
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-26 Score=150.42 Aligned_cols=146 Identities=9% Similarity=0.090 Sum_probs=123.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-ccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~ 77 (150)
++|+|++++|++++.|+.|++||+.+++ ....+..|...+.+++|+|++++|++++.|+.|++||++... .....+.
T Consensus 14 ~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 93 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL 93 (372)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECC
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEee
Confidence 4799999999999999999999999987 778888999999999999999999999999999999986432 1122335
Q ss_pred cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe---eeee-ccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR---IIQP-IAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
. |...+.++. +++++++++++.|+.|++||+..++ .... ...|.. +|.+++|+|+++++++++.++.|.
T Consensus 94 ~-~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~ 167 (372)
T 1k8k_C 94 R-INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS-TVLSLDWHPNSVLLAAGSCDFKCR 167 (372)
T ss_dssp C-CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred c-CCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC-CeeEEEEcCCCCEEEEEcCCCCEE
Confidence 5 788899888 8899999999999999999998765 2233 345666 699999999999999999887764
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-26 Score=154.03 Aligned_cols=146 Identities=10% Similarity=0.130 Sum_probs=129.8
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCCeeeeeeccC------CCcEEEEEEEeCC-CEEEeecCCC---eEEEEEcccc
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFS------EEELTSVVLMKNG-RKVVCGSQSG---TVLLYSWGYF 69 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~d~---~i~i~~~~~~ 69 (150)
++|+|+ +.++++++.|+.|++||+++++.+..+..+ ...+.+++|+|++ ..+++++.|+ .|++||++..
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 478998 789999999999999999999888777766 7889999999997 6899999998 9999999754
Q ss_pred cccccccc-cccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCc-cEEEeccccc
Q 031924 70 KDCSDRFV-GLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVL-CFINSGFLSL 145 (150)
Q Consensus 70 ~~~~~~~~-~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~~~ 145 (150)
......+. + |...+.++. ++ ++++|++++.|+.|++||+++++.+..+..|.. +|.+++|+|++ .++++++.++
T Consensus 251 ~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~d~ 328 (416)
T 2pm9_A 251 NTPLQTLNQG-HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEAPDLFACASFDN 328 (416)
T ss_dssp TSCSBCCCSC-CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTCTTEEEECCSSS
T ss_pred CCCcEEeecC-ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC-ceEEEEECCCCCCEEEEEecCC
Confidence 46677777 7 899999988 77 899999999999999999999999999988888 69999999999 8999999988
Q ss_pred ccc
Q 031924 146 NVN 148 (150)
Q Consensus 146 ~v~ 148 (150)
.|.
T Consensus 329 ~i~ 331 (416)
T 2pm9_A 329 KIE 331 (416)
T ss_dssp EEE
T ss_pred cEE
Confidence 764
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=152.95 Aligned_cols=146 Identities=18% Similarity=0.149 Sum_probs=119.8
Q ss_pred Ceeec--CcceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeC--CCEEEeecCCCeEEEEEcccccc--c
Q 031924 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKD--C 72 (150)
Q Consensus 1 i~~~~--~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~--~ 72 (150)
++|+| ++++|++++.|++|++||+++++ ....+.+|...|.+++|+|+ +.+|++++.|++|++||++.... .
T Consensus 63 v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 63 VAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV 142 (316)
T ss_dssp EEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred EEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence 36765 48899999999999999998874 45667789999999999998 78999999999999999864322 2
Q ss_pred ccccccccccceeEee-ecC-----------------CCEEEEecCCCcEEEEeccCC---eeeeeccCCCCcceeEEEE
Q 031924 73 SDRFVGLSPNSVDALL-KLD-----------------EDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLGI 131 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~-~~~-----------------~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~~i~~~~~ 131 (150)
...+.+ |...+.++. +|+ +++|++++.|+.|++||++.. +.+..+..|.. +|.+++|
T Consensus 143 ~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~ 220 (316)
T 3bg1_A 143 KKINNA-HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAW 220 (316)
T ss_dssp CCBTTS-SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS-CEEEEEC
T ss_pred eeeecc-ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC-ceEEEEe
Confidence 345556 777777766 554 468999999999999999754 46677888988 6999999
Q ss_pred cCCc----cEEEecccccccc
Q 031924 132 ASVL----CFINSGFLSLNVN 148 (150)
Q Consensus 132 ~~~~----~~l~s~~~~~~v~ 148 (150)
+|++ .+|++|+.++.|.
T Consensus 221 sp~~~~~~~~las~s~D~~v~ 241 (316)
T 3bg1_A 221 APSIGLPTSTIASCSQDGRVF 241 (316)
T ss_dssp CCCSSCSCCEEEEEETTCEEE
T ss_pred cCCCCCCCceEEEEcCCCeEE
Confidence 9987 8999999988764
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-25 Score=146.60 Aligned_cols=144 Identities=15% Similarity=0.171 Sum_probs=109.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeec--cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc---------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~--------- 69 (150)
|+||+++ +|++| .|++|++||+++++.+..+. .|...|++++|+|++++|++|+.||+|++||++..
T Consensus 31 l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h 108 (318)
T 4ggc_A 31 VDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH 108 (318)
T ss_dssp EEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCc
Confidence 4788875 66666 58999999999998776554 66778999999999999999999999999997532
Q ss_pred -------------------------------------------------------------------------ccc----
Q 031924 70 -------------------------------------------------------------------------KDC---- 72 (150)
Q Consensus 70 -------------------------------------------------------------------------~~~---- 72 (150)
++.
T Consensus 109 ~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 188 (318)
T 4ggc_A 109 SARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 188 (318)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC
T ss_pred cceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc
Confidence 000
Q ss_pred cccc--------------------------------------------ccccccceeEee-ecCCCEEEE--ecCCCcEE
Q 031924 73 SDRF--------------------------------------------VGLSPNSVDALL-KLDEDRVIT--GSENGLIS 105 (150)
Q Consensus 73 ~~~~--------------------------------------------~~~~~~~v~~~~-~~~~~~l~~--~~~dg~i~ 105 (150)
.... .. +...+..+. .++++.+++ ++.|+.|+
T Consensus 189 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~ 267 (318)
T 4ggc_A 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLV 267 (318)
T ss_dssp SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEE
Confidence 0000 00 111222233 445555554 44799999
Q ss_pred EEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 106 LVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 106 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+||+++++.+..+.+|.+ +|.+++|+|+|++|+||+.++.|.
T Consensus 268 iwd~~~~~~~~~l~gH~~-~V~~l~~spdg~~l~S~s~D~~v~ 309 (318)
T 4ggc_A 268 IWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLR 309 (318)
T ss_dssp EEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEE
T ss_pred EEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEE
Confidence 999999999999999988 699999999999999999998774
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=157.78 Aligned_cols=144 Identities=14% Similarity=0.119 Sum_probs=118.9
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCeeeeeec--cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
|+|+| ++++|++++.|++|++||++++....... .+...+.+++|+|++++|++|+.||.|++||++ ++.+..+.
T Consensus 170 l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~--~~~~~~~~ 247 (435)
T 4e54_B 170 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD--GKELWNLR 247 (435)
T ss_dssp EEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS--SCBCCCSB
T ss_pred EEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC--cceeEEEe
Confidence 47898 68899999999999999998765433332 234467899999999999999999999999985 46677788
Q ss_pred cccccceeEee-ecCCC-EEEEecCCCcEEEEeccCCeeeee---ccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 78 GLSPNSVDALL-KLDED-RVITGSENGLISLVGILPNRIIQP---IAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+ |...|.++. +|+++ ++++++.|+.|++||+++.+.... ...|.. +|.+++|+|+|++|++|+.++.|.
T Consensus 248 ~-h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~spdg~~l~s~~~D~~i~ 321 (435)
T 4e54_B 248 M-HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH-PVNAACFSPDGARLLTTDQKSEIR 321 (435)
T ss_dssp C-CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS-CEEECCBCTTSSEEEEEESSSCEE
T ss_pred c-ccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc-cccceeECCCCCeeEEEcCCCEEE
Confidence 8 999999988 77665 788999999999999987654333 346777 699999999999999999988764
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-26 Score=167.95 Aligned_cols=145 Identities=12% Similarity=0.090 Sum_probs=120.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee----ee--ec-----cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TR--SE-----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~--~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 69 (150)
++|+|++++|++++.|++|++||+.++... .. +. +|...|.+++|+|++++|++|+.||+|++|++...
T Consensus 441 v~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 441 KLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp CCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred ccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence 468999999999999999999999887421 11 11 67889999999999999999999999999998632
Q ss_pred c--------------------------------------------ccccccccccccceeEee-ecCCCEEEEecCCCcE
Q 031924 70 K--------------------------------------------DCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLI 104 (150)
Q Consensus 70 ~--------------------------------------------~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i 104 (150)
. ++...+.+ |...|.++. +|+| +|++|+.|++|
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-h~~~V~svafSpdG-~lAsgs~D~tv 598 (902)
T 2oaj_A 521 QFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA-NKGKTSAINNSNIG-FVGIAYAAGSL 598 (902)
T ss_dssp CC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC-CSCSEEEEEECBTS-EEEEEETTSEE
T ss_pred cccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc-CCCcEEEEEecCCc-EEEEEeCCCcE
Confidence 1 12455667 899999998 8999 99999999999
Q ss_pred EEEeccCCeeee-----ecc-CCCCcceeEEEEc-----CCc---cEEEecccccccc
Q 031924 105 SLVGILPNRIIQ-----PIA-EHSEYPIESLGIA-----SVL---CFINSGFLSLNVN 148 (150)
Q Consensus 105 ~~~d~~~~~~~~-----~~~-~~~~~~i~~~~~~-----~~~---~~l~s~~~~~~v~ 148 (150)
++||+++...+. .+. .|.. .|++++|+ ||| ++|++|+.++.|.
T Consensus 599 ~lwd~~~~~~~~~~~~~~~~~gh~~-~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~ 655 (902)
T 2oaj_A 599 MLIDRRGPAIIYMENIREISGAQSA-CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVI 655 (902)
T ss_dssp EEEETTTTEEEEEEEGGGTCSSCCC-CEEEEEEEEEECTTSSSEEEEEEEEETTSEEE
T ss_pred EEEECCCCeEEEEeehhHhcccccc-ceEEEEEEEEecCCCCCcceEEEEEecCCcEE
Confidence 999998776543 343 6777 59999999 885 8999999998774
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=147.06 Aligned_cols=146 Identities=13% Similarity=0.125 Sum_probs=118.1
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCCe-----eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc----
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNT-----VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---- 70 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~---- 70 (150)
|+|+|+ +++|++++.|++|++||+.+.+ +...+.+|...|.+++|+|++++|++++.|+.+++|+.....
T Consensus 44 v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~ 123 (340)
T 4aow_A 44 IATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRR 123 (340)
T ss_dssp EEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeee
Confidence 579997 6899999999999999998753 456778899999999999999999999999999999874320
Q ss_pred --------------------------------------ccccccccccccceeEee-ec--CCCEEEEecCCCcEEEEec
Q 031924 71 --------------------------------------DCSDRFVGLSPNSVDALL-KL--DEDRVITGSENGLISLVGI 109 (150)
Q Consensus 71 --------------------------------------~~~~~~~~~~~~~v~~~~-~~--~~~~l~~~~~dg~i~~~d~ 109 (150)
.......+ |...+..+. .+ ...++++++.|+.|++||+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~ 202 (340)
T 4aow_A 124 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES-HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202 (340)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSS-CSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred ecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEecc-ccCcccceEEccCCCCcEEEEEcCCCEEEEEEC
Confidence 00111223 455566554 33 3457889999999999999
Q ss_pred cCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 110 LPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
++++.+..+..|.. +|.+++|+|++++|++|+.++.|.
T Consensus 203 ~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~ 240 (340)
T 4aow_A 203 ANCKLKTNHIGHTG-YLNTVTVSPDGSLCASGGKDGQAM 240 (340)
T ss_dssp TTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCEEE
T ss_pred CCCceeeEecCCCC-cEEEEEECCCCCEEEEEeCCCeEE
Confidence 99999999988988 699999999999999999988764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=151.61 Aligned_cols=144 Identities=12% Similarity=0.015 Sum_probs=113.5
Q ss_pred Ceeec--CcceEEEEcCCCeEEEEEcCCCeeeeeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccc-ccc
Q 031924 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS-DRF 76 (150)
Q Consensus 1 i~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~-~~~ 76 (150)
++|+| +++++++++.|++|++||+++++...... .+...+.+++|+|++.+|++|+.||.|++||++.. +.. ..+
T Consensus 131 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~-~~~~~~~ 209 (343)
T 3lrv_A 131 MYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP-DQASSRF 209 (343)
T ss_dssp EECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT-TSCCEEC
T ss_pred EEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-CCCccEE
Confidence 46889 99999999999999999999988765553 44557999999999999999999999999999744 433 445
Q ss_pred ccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccC---CCCccee--EEEEcCCccEEEeccc-cccc
Q 031924 77 VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAE---HSEYPIE--SLGIASVLCFINSGFL-SLNV 147 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~~i~--~~~~~~~~~~l~s~~~-~~~v 147 (150)
...|...|.++. ++++.+|++++ ++.|++||+++.+....+.. |.. ++. +++|+|+|++|++++. ++.+
T Consensus 210 ~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~s~~d~~i 285 (343)
T 3lrv_A 210 PVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEF-KTGTVTYDIDDSGKNMIAYSNESNSL 285 (343)
T ss_dssp CCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC------CCEEEEECTTSSEEEEEETTTTEE
T ss_pred eccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccc-cccceEEEECCCCCEEEEecCCCCcE
Confidence 432788999998 89999999999 55999999998876555543 322 344 5999999999999776 5544
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=148.25 Aligned_cols=145 Identities=13% Similarity=0.218 Sum_probs=124.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee---eeec--cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-cccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ---TRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSD 74 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~ 74 (150)
++|+|+++++++++ |+.|++||+.+++.. ..+. .|...+.+++|+|+++++++++.|+.+++||++... ....
T Consensus 57 ~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 135 (337)
T 1gxr_A 57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135 (337)
T ss_dssp EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred EEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee
Confidence 47899999999998 999999999876532 2222 688899999999999999999999999999986432 1445
Q ss_pred ccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+.. |...+.++. +++++.+++++.|+.|++||+++++.+..+..|.. ++.+++|+|+++++++++.++.|.
T Consensus 136 ~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~ 208 (337)
T 1gxr_A 136 ELTS-SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLDNTVR 208 (337)
T ss_dssp EEEC-SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEE
T ss_pred eccc-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccC-ceEEEEECCCCCEEEEEecCCcEE
Confidence 5667 888898887 88999999999999999999999999888888888 699999999999999999887764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=146.57 Aligned_cols=144 Identities=17% Similarity=0.232 Sum_probs=126.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++|+|+++++++++.|+.|++||+++++ ....+..|...+.+++|+|+++++++++.|+.+++||++ .++....+..
T Consensus 103 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~~~~ 181 (337)
T 1gxr_A 103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQG 181 (337)
T ss_dssp EEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEECC
T ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCceeeeeec
Confidence 4789999999999999999999999876 556677888999999999999999999999999999986 3466777778
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|...+.++. +++++.+++++.|+.|++||+++++.+..+ .+.. ++.+++|+|+++++++++.++.|.
T Consensus 182 -~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~-~v~~~~~s~~~~~l~~~~~~~~i~ 249 (337)
T 1gxr_A 182 -HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTS-QIFSLGYCPTGEWLAVGMESSNVE 249 (337)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSS-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred -ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCC-ceEEEEECCCCCEEEEEcCCCcEE
Confidence 889999988 889999999999999999999998887777 4555 599999999999999999887664
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=150.70 Aligned_cols=144 Identities=11% Similarity=0.119 Sum_probs=122.5
Q ss_pred CeeecCc-ceEEEEcCCCeEEEEEcCCCeeeeeec--cCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEccccccccccc
Q 031924 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
++|+|++ ++|++++.|+.|++||+.+++....+. +|...|.+++|+| ++++|++++.|+.|++||++. .....+
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~ 156 (383)
T 3ei3_B 79 LEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG--SVIQVF 156 (383)
T ss_dssp EEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS--CEEEEE
T ss_pred EEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC--CceEEE
Confidence 4789998 899999999999999999887665554 6899999999999 789999999999999999963 444444
Q ss_pred cc--ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc-EEEecccccccc
Q 031924 77 VG--LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC-FINSGFLSLNVN 148 (150)
Q Consensus 77 ~~--~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~~~~v~ 148 (150)
.. .+...+.++. +++++.+++++.|+.|++||+ +++.+..+..|.. .|.+++|+|+++ ++++|+.++.|.
T Consensus 157 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~ 230 (383)
T 3ei3_B 157 AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKA-KVTHAEFNPRCDWLMATSSVDATVK 230 (383)
T ss_dssp ECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSS-CEEEEEECSSCTTEEEEEETTSEEE
T ss_pred eccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCC-cEEEEEECCCCCCEEEEEeCCCEEE
Confidence 33 0347788888 899999999999999999999 5677788888888 699999999999 999999887764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=150.63 Aligned_cols=145 Identities=12% Similarity=0.105 Sum_probs=126.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc---C---CCcEEEEEEEeCCCEEEeecCC---CeEEEEEcccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---S---EEELTSVVLMKNGRKVVCGSQS---GTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---~~i~i~~~~~~~~ 71 (150)
++|+|++ ++++++.|+.|++||+++++.+..+.. | ...+.+++|+|++++|++++.| +.|++||++. ++
T Consensus 192 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~ 269 (397)
T 1sq9_A 192 VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GE 269 (397)
T ss_dssp EEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CC
T ss_pred EEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC-Cc
Confidence 4689999 999999999999999999988888888 8 8999999999999999999999 9999999864 35
Q ss_pred cccccccc------------cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeecc------CC-----------
Q 031924 72 CSDRFVGL------------SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIA------EH----------- 121 (150)
Q Consensus 72 ~~~~~~~~------------~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------~~----------- 121 (150)
....+.+. |...+.++. ++++++|++++.||.|++||+.+++.+..+. .|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (397)
T 1sq9_A 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 349 (397)
T ss_dssp EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccc
Confidence 55555431 567788887 8899999999999999999999999888887 66
Q ss_pred ----CCcceeEEEEcCCc----------cEEEecccccccc
Q 031924 122 ----SEYPIESLGIASVL----------CFINSGFLSLNVN 148 (150)
Q Consensus 122 ----~~~~i~~~~~~~~~----------~~l~s~~~~~~v~ 148 (150)
.. +|.+++|+|++ ++|++|+.++.|.
T Consensus 350 ~~~~~~-~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~ 389 (397)
T 1sq9_A 350 DSLAEP-GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIR 389 (397)
T ss_dssp CBCSSC-CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred ccccCC-ceeEEEeccccccccccccccceEEEecCCCcEE
Confidence 66 69999999998 7999999988775
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-26 Score=152.56 Aligned_cols=145 Identities=16% Similarity=0.103 Sum_probs=129.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|++++|++++.|+.|++||+++++....+..|...+.+++|+|++ .+++++.|+.+++||++ .++....+.. |
T Consensus 253 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~~-~ 329 (425)
T 1r5m_A 253 LEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLK-QNTLLALSIV-D 329 (425)
T ss_dssp EEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETT-TTEEEEEEEC-T
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECC-CCcEeEeccc-C
Confidence 4789999999999999999999999988888888899999999999999 99999999999999986 3466777777 8
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCe--------------------eeeeccCCCCc-ceeEEEEcCCccEE
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNR--------------------IIQPIAEHSEY-PIESLGIASVLCFI 138 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~--------------------~~~~~~~~~~~-~i~~~~~~~~~~~l 138 (150)
...+.++. ++++++|++++.||.|++||+.+++ .+..+..|... +|.+++|+|++++|
T Consensus 330 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 409 (425)
T 1r5m_A 330 GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKI 409 (425)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEE
T ss_pred CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceE
Confidence 88999887 8899999999999999999998877 78888777552 59999999999999
Q ss_pred Eecccccccc
Q 031924 139 NSGFLSLNVN 148 (150)
Q Consensus 139 ~s~~~~~~v~ 148 (150)
++++.++.|.
T Consensus 410 ~~~~~dg~i~ 419 (425)
T 1r5m_A 410 SVAYSLQEGS 419 (425)
T ss_dssp EEEESSSCCE
T ss_pred EEEecCceEE
Confidence 9999998775
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=150.07 Aligned_cols=146 Identities=16% Similarity=0.090 Sum_probs=124.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcC--CCeeeeeeccCCCcEEEEEEEeC--CCEEEeecCCCeEEEEEccccc-ccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~-~~~~~ 75 (150)
++|+|++++|++++.|+.|++||+. +++....+..|...|.+++|+++ +++|++++.||.|++||+.... .....
T Consensus 17 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 96 (379)
T 3jrp_A 17 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 96 (379)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred EEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee
Confidence 4799999999999999999999998 45567788899999999999987 9999999999999999996432 25566
Q ss_pred cccccccceeEee-ecC--CCEEEEecCCCcEEEEeccCCe--eeeeccCCCCcceeEEEEcC-------------CccE
Q 031924 76 FVGLSPNSVDALL-KLD--EDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLGIAS-------------VLCF 137 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~--~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~-------------~~~~ 137 (150)
+.. |...+.++. +++ ++++++++.|+.|++||+.... ....+..|.. +|.+++|+| ++.+
T Consensus 97 ~~~-~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T 3jrp_A 97 HAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAPATIEEDGEHNGTKESRK 174 (379)
T ss_dssp ECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT-CEEEEEECCCC----------CTTCE
T ss_pred ecC-CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC-ceEEEEEcCccccccccccCCCCCCE
Confidence 667 888999988 777 8999999999999999998763 3344557777 699999999 6999
Q ss_pred EEecccccccc
Q 031924 138 INSGFLSLNVN 148 (150)
Q Consensus 138 l~s~~~~~~v~ 148 (150)
+++|+.++.|.
T Consensus 175 l~~~~~dg~i~ 185 (379)
T 3jrp_A 175 FVTGGADNLVK 185 (379)
T ss_dssp EEEEETTSCEE
T ss_pred EEEEeCCCeEE
Confidence 99999988764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=148.68 Aligned_cols=144 Identities=15% Similarity=0.124 Sum_probs=123.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCee---e-eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc---------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV---Q-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG--------- 67 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~--------- 67 (150)
++|+|++++|++++.|+.|++||++.++. . .....|...+.+++|+|++++|++++.|+.+++||++
T Consensus 102 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 181 (372)
T 1k8k_C 102 VRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 181 (372)
T ss_dssp EEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCC
T ss_pred EEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccc
Confidence 47899999999999999999999988752 2 3335678899999999999999999999999999963
Q ss_pred --------cccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEE
Q 031924 68 --------YFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFI 138 (150)
Q Consensus 68 --------~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (150)
..++....+.. |...+.++. ++++++|++++.|+.|++||+++++.+..+..|.. ++.+++|+|+++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l 259 (372)
T 1k8k_C 182 PTPWGSKMPFGELMFESSS-SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL-PLLAVTFITESSLV 259 (372)
T ss_dssp CBTTBSCCCTTCEEEECCC-CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEE
T ss_pred ccccccccchhhheEecCC-CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEE
Confidence 12355666667 888899988 88999999999999999999999999888888877 69999999999999
Q ss_pred Eeccccccc
Q 031924 139 NSGFLSLNV 147 (150)
Q Consensus 139 ~s~~~~~~v 147 (150)
++| .++.|
T Consensus 260 ~~~-~d~~i 267 (372)
T 1k8k_C 260 AAG-HDCFP 267 (372)
T ss_dssp EEE-TTSSC
T ss_pred EEE-eCCeE
Confidence 988 56554
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-25 Score=148.58 Aligned_cols=142 Identities=14% Similarity=0.083 Sum_probs=121.7
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCeeeeeecc---CCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
++|+| ++++|++++.|+.|++||++.. ....+.. +...+.+++|+|++++|++++.|+.|++||++ ++....+
T Consensus 124 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~ 200 (383)
T 3ei3_B 124 MKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIFKE 200 (383)
T ss_dssp EEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEEEE
T ss_pred EEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEEEe
Confidence 47899 7899999999999999999964 4444433 34789999999999999999999999999984 5677778
Q ss_pred ccccccceeEee-ecCCC-EEEEecCCCcEEEEeccC----CeeeeeccCCCCcceeEEEEcC-CccEEEecccccccc
Q 031924 77 VGLSPNSVDALL-KLDED-RVITGSENGLISLVGILP----NRIIQPIAEHSEYPIESLGIAS-VLCFINSGFLSLNVN 148 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~~~~-~l~~~~~dg~i~~~d~~~----~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v~ 148 (150)
.+ |...+.++. +++++ ++++++.|+.|++||+++ +..+..+ .|.. +|.+++|+| ++++|++++.++.|.
T Consensus 201 ~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~-~v~~~~~s~~~~~~l~~~~~d~~i~ 276 (383)
T 3ei3_B 201 KL-HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK-PVNAAYFNPTDSTKLLTTDQRNEIR 276 (383)
T ss_dssp EC-SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS-CEEEEEECTTTSCEEEEEESSSEEE
T ss_pred cc-CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC-ceEEEEEcCCCCCEEEEEcCCCcEE
Confidence 88 999999988 88888 999999999999999987 5566666 6777 699999999 999999999887764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=149.84 Aligned_cols=145 Identities=15% Similarity=0.138 Sum_probs=113.8
Q ss_pred CeeecCcceEEEEcC------CCeEEEEEcCCCeee----eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc
Q 031924 1 MTFAADAMKLLGTSG------DGTLSVCNLRKNTVQ----TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (150)
Q Consensus 1 i~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 70 (150)
++|+|||++|++++. |+.+++|+..++... .....|...|.+++|+|++++ ++++.||+|++||+....
T Consensus 48 v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~ 126 (357)
T 4g56_B 48 VRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKE 126 (357)
T ss_dssp EEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC------
T ss_pred EEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccc
Confidence 579999999999987 788999998876533 334467888999999999864 567789999999986432
Q ss_pred cc-cc--ccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc-EEEeccccc
Q 031924 71 DC-SD--RFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC-FINSGFLSL 145 (150)
Q Consensus 71 ~~-~~--~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~~~ 145 (150)
.. .. ...+ |...|.++. +|++++|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|++. ++++++.++
T Consensus 127 ~~~~~~~~~~~-h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~-~v~~v~~s~~~~~~~~s~~~dg 204 (357)
T 4g56_B 127 SLLVNKFAKYE-HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSS-EVNCVAACPGKDTIFLSCGEDG 204 (357)
T ss_dssp --CCCCEEECC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTCSSCEEEEETTS
T ss_pred eeEEEeeccCC-CCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEccCCCceeeeeccCC
Confidence 11 11 2236 888999998 89999999999999999999999999999999988 699999999875 788998887
Q ss_pred ccc
Q 031924 146 NVN 148 (150)
Q Consensus 146 ~v~ 148 (150)
.|.
T Consensus 205 ~v~ 207 (357)
T 4g56_B 205 RIL 207 (357)
T ss_dssp CEE
T ss_pred ceE
Confidence 664
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-25 Score=147.30 Aligned_cols=146 Identities=12% Similarity=0.140 Sum_probs=123.8
Q ss_pred CeeecC--cceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeC--CCEEEeecCCCeEEEEEccccc-ccc
Q 031924 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCS 73 (150)
Q Consensus 1 i~~~~~--~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~-~~~ 73 (150)
++|+|+ +++|++++.|+.|++||+++++ ....+..|...+.+++|+|+ +.+|++++.|+.|++||++... ...
T Consensus 61 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 140 (379)
T 3jrp_A 61 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 140 (379)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE
T ss_pred EEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee
Confidence 467776 8999999999999999999987 66777788999999999999 9999999999999999996442 223
Q ss_pred cccccccccceeEee-ec-------------CCCEEEEecCCCcEEEEeccCCe----eeeeccCCCCcceeEEEEcCC-
Q 031924 74 DRFVGLSPNSVDALL-KL-------------DEDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLGIASV- 134 (150)
Q Consensus 74 ~~~~~~~~~~v~~~~-~~-------------~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~~i~~~~~~~~- 134 (150)
..+.. |...+.++. ++ +++.+++++.|+.|++||+++++ ....+..|.. +|.+++|+|+
T Consensus 141 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~ 218 (379)
T 3jrp_A 141 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTV 218 (379)
T ss_dssp EEEEC-CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCC
T ss_pred EEecC-CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCC
Confidence 34456 888899888 66 58999999999999999997653 4556777877 6999999999
Q ss_pred --ccEEEecccccccc
Q 031924 135 --LCFINSGFLSLNVN 148 (150)
Q Consensus 135 --~~~l~s~~~~~~v~ 148 (150)
+++|++++.++.|.
T Consensus 219 ~~~~~l~s~~~dg~i~ 234 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCI 234 (379)
T ss_dssp SSSEEEEEEETTSCEE
T ss_pred CCCCeEEEEeCCCEEE
Confidence 89999999988764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-25 Score=149.64 Aligned_cols=144 Identities=12% Similarity=0.171 Sum_probs=126.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|++++|++++.||.|++||+++++.+..+..|...+.+++| ++..+++++.||.|++||++........+.+ |
T Consensus 140 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~ 216 (401)
T 4aez_A 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-H 216 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC-C
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcC-C
Confidence 479999999999999999999999999999899999999999999 4679999999999999999755566777788 9
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCc-cEEEecc--cccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVL-CFINSGF--LSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~--~~~~v~ 148 (150)
...+.++. +++++++++++.|+.|++||+++++.+..+..|.. +|.+++|+|++ .++++|+ .++.|.
T Consensus 217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~ 287 (401)
T 4aez_A 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIH 287 (401)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEE
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEE
Confidence 99999988 88999999999999999999999888888888877 69999999976 5666654 566553
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-26 Score=157.75 Aligned_cols=146 Identities=12% Similarity=0.023 Sum_probs=117.4
Q ss_pred CeeecC------cceEEEEcCCCeEEEEEcCCCee-----------eeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEE
Q 031924 1 MTFAAD------AMKLLGTSGDGTLSVCNLRKNTV-----------QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (150)
Q Consensus 1 i~~~~~------~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 63 (150)
++|+|+ +.+|++++.|++|++||+..++. ...+.+|...+++++|+++ ..|++|+.||+|++
T Consensus 213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~l 291 (524)
T 2j04_B 213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAE 291 (524)
T ss_dssp EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEE
T ss_pred EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEE
Confidence 467875 57999999999999999987532 2356778899999999986 47999999999999
Q ss_pred EEcccccccccccccccccceeEe--e-ecCC-CEEEEecCCCcEEEEeccCCeeeeeccCCCC-cceeEEEEcCCccEE
Q 031924 64 YSWGYFKDCSDRFVGLSPNSVDAL--L-KLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSE-YPIESLGIASVLCFI 138 (150)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~v~~~--~-~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l 138 (150)
||++........+.+ |...|.++ . ++++ ++|++++.|++|++||+++++....+..|.. ..+.+++|+|+++.+
T Consensus 292 WD~~~~~~~~~~~~~-H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l 370 (524)
T 2j04_B 292 FDLTDPEVPSFYDQV-HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY 370 (524)
T ss_dssp EETTBCSSCSEEEEC-SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE
T ss_pred EECCCCCCceEEeec-ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeE
Confidence 999644344455778 99999988 4 5666 8999999999999999998776666655532 137899999999999
Q ss_pred Eecccccccc
Q 031924 139 NSGFLSLNVN 148 (150)
Q Consensus 139 ~s~~~~~~v~ 148 (150)
++++.+..|.
T Consensus 371 ~s~~~d~tv~ 380 (524)
T 2j04_B 371 IYSDGASSLR 380 (524)
T ss_dssp EEECSSSEEE
T ss_pred EEeCCCCcEE
Confidence 9988876553
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.6e-25 Score=145.27 Aligned_cols=144 Identities=10% Similarity=0.127 Sum_probs=127.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC-CeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
++|+|+++++++++.|+.|++||+.+ ++....+..|...+.+++|+|++++|++++.|+.|++||++. ++....+.
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~-- 257 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYE-- 257 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEE--
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC-Cceeeeec--
Confidence 36899999999999999999999998 677888888999999999999999999999999999999863 45555554
Q ss_pred cccceeEee-ecCCCEEEEecCCC--------------cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENG--------------LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg--------------~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
+...+..+. +++++.+++++.++ .+++||..+++.+..+..|.. +|.+++|+|++++|++++.+
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 258 TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG-PLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETT
T ss_pred CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC-cEEEEEECCCCCEEEEEcCC
Confidence 456677776 89999999999888 899999999999999988888 69999999999999999999
Q ss_pred cccc
Q 031924 145 LNVN 148 (150)
Q Consensus 145 ~~v~ 148 (150)
+.|.
T Consensus 337 g~v~ 340 (369)
T 3zwl_B 337 GFIR 340 (369)
T ss_dssp SEEE
T ss_pred CeEE
Confidence 8775
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-25 Score=151.32 Aligned_cols=145 Identities=12% Similarity=0.150 Sum_probs=124.1
Q ss_pred CeeecCcceE-EEEcCCCeEEEEEcC--CCeeeeeec--cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc---c
Q 031924 1 MTFAADAMKL-LGTSGDGTLSVCNLR--KNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD---C 72 (150)
Q Consensus 1 i~~~~~~~~l-~~~~~d~~i~i~d~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~---~ 72 (150)
++|+|++++| ++++.|+.|++||+. +++.+..+. .+...+.+++|+|++++|++++.+|.+++|++..... .
T Consensus 108 ~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~ 187 (450)
T 2vdu_B 108 LRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT 187 (450)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC
T ss_pred EEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc
Confidence 4799999996 888899999999999 777776665 5678899999999999999999999999999864321 2
Q ss_pred ccccccccccceeEee-ecC---CCEEEEecCCCcEEEEeccCCeeeee-ccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 73 SDRFVGLSPNSVDALL-KLD---EDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~-~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
...+.+ |...+.++. +++ +++|++++.|+.|++||+.+++.+.. +..|.. +|.+++|+ ++++|++|+.++.|
T Consensus 188 ~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~s-d~~~l~s~~~d~~v 264 (450)
T 2vdu_B 188 QEPILG-HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH-FVSSICCG-KDYLLLSAGGDDKI 264 (450)
T ss_dssp CCCSEE-CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS-CEEEEEEC-STTEEEEEESSSEE
T ss_pred ceeeec-ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC-ceEEEEEC-CCCEEEEEeCCCeE
Confidence 236677 889999988 888 88999999999999999998887766 557877 69999999 99999999988876
Q ss_pred c
Q 031924 148 N 148 (150)
Q Consensus 148 ~ 148 (150)
.
T Consensus 265 ~ 265 (450)
T 2vdu_B 265 F 265 (450)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-25 Score=150.02 Aligned_cols=146 Identities=11% Similarity=0.086 Sum_probs=125.3
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCC---eeeeeeccCCCcEEEEEEEeCCC-EEEeecCCCeEEEEEcccccccccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
++|+| ++.++++++.|+.|++||++++ +....+..|...+++++|+|++. .+++|+.||.|++||++..+..+..
T Consensus 237 v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~ 316 (430)
T 2xyi_A 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred eEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE
Confidence 46888 6788999999999999999987 45667778899999999999987 6889999999999999865567778
Q ss_pred cccccccceeEee-ecCC-CEEEEecCCCcEEEEeccC--------------CeeeeeccCCCCcceeEEEEcCCcc-EE
Q 031924 76 FVGLSPNSVDALL-KLDE-DRVITGSENGLISLVGILP--------------NRIIQPIAEHSEYPIESLGIASVLC-FI 138 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~-~~l~~~~~dg~i~~~d~~~--------------~~~~~~~~~~~~~~i~~~~~~~~~~-~l 138 (150)
+.. |...+.++. +|++ .++++++.|+.|++||+.. .+.+..+..|.. +|.+++|+|++. ++
T Consensus 317 ~~~-h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l 394 (430)
T 2xyi_A 317 FES-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWII 394 (430)
T ss_dssp EEC-CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEE
T ss_pred eec-CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEE
Confidence 888 999999988 7777 4799999999999999976 256667777877 699999999999 89
Q ss_pred Eecccccccc
Q 031924 139 NSGFLSLNVN 148 (150)
Q Consensus 139 ~s~~~~~~v~ 148 (150)
++++.++.|.
T Consensus 395 ~s~s~dg~i~ 404 (430)
T 2xyi_A 395 CSVSEDNIMQ 404 (430)
T ss_dssp EEEETTSEEE
T ss_pred EEEECCCCEE
Confidence 9999888764
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-25 Score=150.95 Aligned_cols=145 Identities=10% Similarity=0.100 Sum_probs=118.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe-----------eeeeeccCC------------CcEEEEEEEeCC--CEEEee
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-----------VQTRSEFSE------------EELTSVVLMKNG--RKVVCG 55 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~ 55 (150)
++|+|++++|++++.||.|++||+.+++ ....+.+|. +.|.+++|+|++ ..|+++
T Consensus 34 v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~ 113 (447)
T 3dw8_B 34 VEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLS 113 (447)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEe
Confidence 4799999999999999999999999876 466778887 889999999998 799999
Q ss_pred cCCCeEEEEEccccccc--------------------------------------ccc-cccccccceeEee-ecCCCEE
Q 031924 56 SQSGTVLLYSWGYFKDC--------------------------------------SDR-FVGLSPNSVDALL-KLDEDRV 95 (150)
Q Consensus 56 ~~d~~i~i~~~~~~~~~--------------------------------------~~~-~~~~~~~~v~~~~-~~~~~~l 95 (150)
+.|++|++||+...... ... ..+ |...|.++. ++++++|
T Consensus 114 s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l 192 (447)
T 3dw8_B 114 TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA-HTYHINSISINSDYETY 192 (447)
T ss_dssp ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC-CSSCCCEEEECTTSSEE
T ss_pred CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC-CCcceEEEEEcCCCCEE
Confidence 99999999998632110 012 246 888899988 8899999
Q ss_pred EEecCCCcEEEEeccC-Ceeee-------eccCCCCcceeEEEEcCCc-cEEEecccccccc
Q 031924 96 ITGSENGLISLVGILP-NRIIQ-------PIAEHSEYPIESLGIASVL-CFINSGFLSLNVN 148 (150)
Q Consensus 96 ~~~~~dg~i~~~d~~~-~~~~~-------~~~~~~~~~i~~~~~~~~~-~~l~s~~~~~~v~ 148 (150)
+++ .|+.|++||++. ++.+. .+..|.. .|.+++|+|++ ++|++|+.++.|.
T Consensus 193 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 193 LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTE-VITAAEFHPNSCNTFVYSSSKGTIR 252 (447)
T ss_dssp EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCC-CEEEEEECSSCTTEEEEEETTSCEE
T ss_pred EEe-CCCeEEEEECCCCCceeeeeecccccccccCc-ceEEEEECCCCCcEEEEEeCCCeEE
Confidence 998 799999999984 44444 3557777 69999999998 9999999988764
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-25 Score=145.78 Aligned_cols=143 Identities=13% Similarity=0.156 Sum_probs=120.6
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe---CCCEEEeecCCCeEEEEEcccccccccccc-
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK---NGRKVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~- 77 (150)
+|+|+++++++++.|+.|++||+++++... ...+...+.+++|+| ++.++++++.||.|++||++. ++....+.
T Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~ 252 (357)
T 3i2n_A 175 AYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFAS 252 (357)
T ss_dssp CCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEE
T ss_pred ccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceee
Confidence 378999999999999999999999987644 356788999999999 999999999999999999864 34444444
Q ss_pred ----cccccceeEee-ecCCC-EEEEecCCCcEEEEeccCC-------------------eeeeeccCCCCcceeEEEEc
Q 031924 78 ----GLSPNSVDALL-KLDED-RVITGSENGLISLVGILPN-------------------RIIQPIAEHSEYPIESLGIA 132 (150)
Q Consensus 78 ----~~~~~~v~~~~-~~~~~-~l~~~~~dg~i~~~d~~~~-------------------~~~~~~~~~~~~~i~~~~~~ 132 (150)
+ |...+.++. +++++ ++++++.||.|++||++.. +.+..+..|.. +|.+++|+
T Consensus 253 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~v~~~~~s 330 (357)
T 3i2n_A 253 VSEKA-HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ-PISSLDWS 330 (357)
T ss_dssp EEEEC-CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS-CEEEEEEC
T ss_pred eccCC-CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC-CeeEEEEc
Confidence 7 889999988 88888 8999999999999999753 35666777877 69999999
Q ss_pred CCccEEE-ecccccccc
Q 031924 133 SVLCFIN-SGFLSLNVN 148 (150)
Q Consensus 133 ~~~~~l~-s~~~~~~v~ 148 (150)
|++++|+ +++.++.|.
T Consensus 331 ~~~~~l~~s~~~d~~i~ 347 (357)
T 3i2n_A 331 PDKRGLCVCSSFDQTVR 347 (357)
T ss_dssp SSSTTEEEEEETTSEEE
T ss_pred CCCCeEEEEecCCCcEE
Confidence 9999998 898887764
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=150.28 Aligned_cols=145 Identities=14% Similarity=0.142 Sum_probs=121.6
Q ss_pred eeecCcceEE-EEcCCCeEEEEEcCCCe----eeeeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEccccc-----
Q 031924 2 TFAADAMKLL-GTSGDGTLSVCNLRKNT----VQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK----- 70 (150)
Q Consensus 2 ~~~~~~~~l~-~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~----- 70 (150)
+++|+...++ +++.||.|++|++.... ....+.+|.+.|.+++|+| ++++|++++.||+|++||+...+
T Consensus 41 ~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~ 120 (402)
T 2aq5_A 41 AVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL 120 (402)
T ss_dssp EECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB
T ss_pred EECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc
Confidence 4566655444 46889999999996642 2345678999999999999 89999999999999999986432
Q ss_pred -ccccccccccccceeEee-ecCC-CEEEEecCCCcEEEEeccCCeeeeec--cCCCCcceeEEEEcCCccEEEeccccc
Q 031924 71 -DCSDRFVGLSPNSVDALL-KLDE-DRVITGSENGLISLVGILPNRIIQPI--AEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 71 -~~~~~~~~~~~~~v~~~~-~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
+....+.+ |...|.++. ++++ +++++++.|+.|++||+.+++.+..+ ..|.. .|.+++|+|++++|++++.++
T Consensus 121 ~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~ 198 (402)
T 2aq5_A 121 REPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD-TIYSVDWSRDGALICTSCRDK 198 (402)
T ss_dssp CSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS-CEEEEEECTTSSCEEEEETTS
T ss_pred CCceEEecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC-ceEEEEECCCCCEEEEEecCC
Confidence 44566778 999999998 7887 69999999999999999999988888 67877 699999999999999999888
Q ss_pred ccc
Q 031924 146 NVN 148 (150)
Q Consensus 146 ~v~ 148 (150)
.|.
T Consensus 199 ~i~ 201 (402)
T 2aq5_A 199 RVR 201 (402)
T ss_dssp EEE
T ss_pred cEE
Confidence 764
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-25 Score=146.09 Aligned_cols=145 Identities=12% Similarity=0.161 Sum_probs=122.4
Q ss_pred CeeecC----cceEEEEcCCCeEEEEEcCCCeeeeeecc-----CCCcEEEEEEEeC----CCEEEeecCCCeEEEEEcc
Q 031924 1 MTFAAD----AMKLLGTSGDGTLSVCNLRKNTVQTRSEF-----SEEELTSVVLMKN----GRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 1 i~~~~~----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~~~~~d~~i~i~~~~ 67 (150)
++|+|+ ...+++++.++.|++||+.+++.+..+.. +...+.+++|+|+ +++|++++.||.|++||+.
T Consensus 24 i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~ 103 (366)
T 3k26_A 24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI 103 (366)
T ss_dssp EEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT
T ss_pred EEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch
Confidence 468873 45666666777999999998766544442 5578999999999 6799999999999999986
Q ss_pred cccccccccccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeec---cCCCCcceeEEEEcCCccEEEecc
Q 031924 68 YFKDCSDRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
.++....+.+ |...|.++. ++ +++++++++.||.|++||+++++.+..+ ..|.. +|.+++|+|++++|++++
T Consensus 104 -~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~ 180 (366)
T 3k26_A 104 -TMQCIKHYVG-HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD-EVLSADYDLLGEKIMSCG 180 (366)
T ss_dssp -TCCEEEEEES-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS-CEEEEEECTTSSEEEEEE
T ss_pred -hceEeeeecC-CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC-ceeEEEECCCCCEEEEec
Confidence 4567777888 999999998 77 8899999999999999999998888777 57777 699999999999999999
Q ss_pred cccccc
Q 031924 143 LSLNVN 148 (150)
Q Consensus 143 ~~~~v~ 148 (150)
.++.|.
T Consensus 181 ~dg~i~ 186 (366)
T 3k26_A 181 MDHSLK 186 (366)
T ss_dssp TTSCEE
T ss_pred CCCCEE
Confidence 988764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=149.26 Aligned_cols=144 Identities=16% Similarity=0.171 Sum_probs=124.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe--CCCEEEeecCCCeEEEEEccccccc------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDC------ 72 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~~~~------ 72 (150)
++|+|++ .+++++.|++|++||+++++....+.+|.+.+.+++|++ ++.++++++.|+.+++||++.....
T Consensus 168 l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 246 (464)
T 3v7d_B 168 LKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246 (464)
T ss_dssp EEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------
T ss_pred EEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc
Confidence 3677877 899999999999999999999999999999999999995 6789999999999999998643211
Q ss_pred ----------------ccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc
Q 031924 73 ----------------SDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC 136 (150)
Q Consensus 73 ----------------~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (150)
...+.+ |...+.++ +++++.+++++.|+.|++||+.+++.+..+..|.. +|.+++|+|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~-~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 323 (464)
T 3v7d_B 247 HDYPLVFHTPEENPYFVGVLRG-HMASVRTV-SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERK 323 (464)
T ss_dssp CCSSEEESCGGGCTTEEEEECC-CSSCEEEE-EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTT
T ss_pred CCcceEeeccCCCeEEEEEccC-ccceEEEE-cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCC
Confidence 233455 66777666 67789999999999999999999999999988888 699999999999
Q ss_pred EEEecccccccc
Q 031924 137 FINSGFLSLNVN 148 (150)
Q Consensus 137 ~l~s~~~~~~v~ 148 (150)
++++|+.++.|.
T Consensus 324 ~l~sg~~dg~i~ 335 (464)
T 3v7d_B 324 RCISASMDTTIR 335 (464)
T ss_dssp EEEEEETTSCEE
T ss_pred EEEEEeCCCcEE
Confidence 999999988764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-24 Score=143.70 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=117.2
Q ss_pred eeecC--cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
+|+++ ..++++++.|+.|++||+++++....+.+|.+.|++++|+|++++|++++.|+.|++||++. .+.+..+..
T Consensus 178 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~- 255 (340)
T 4aow_A 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE-GKHLYTLDG- 255 (340)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEEC-
T ss_pred EEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc-CceeeeecC-
Confidence 45554 45788899999999999999999999999999999999999999999999999999999964 455566654
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeecc---------CCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIA---------EHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.++. +++ ..+++++.|+.|++||++++..+..+. .|.. .|.+++|+|+|++|++|+.++.|.
T Consensus 256 -~~~v~~~~~~~~-~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~Dg~v~ 331 (340)
T 4aow_A 256 -GDIINALCFSPN-RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-QCTSLAWSADGQTLFAGYTDNLVR 331 (340)
T ss_dssp -SSCEEEEEECSS-SSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCC-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred -CceEEeeecCCC-CceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCC-CEEEEEECCCCCEEEEEeCCCEEE
Confidence 45677777 555 456667789999999998876655543 4556 599999999999999999998875
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=148.77 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=122.8
Q ss_pred CeeecC----cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEcccccccccc
Q 031924 1 MTFAAD----AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
++|+|+ +++|++++.|+.|++||+++++.+..+..|...+.+++|+| ++++|++++.||.|++||++. ++....
T Consensus 75 ~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~ 153 (366)
T 3k26_A 75 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-DTLVAI 153 (366)
T ss_dssp EEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT-TEEEEE
T ss_pred EEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec-CeEEEE
Confidence 468888 67999999999999999999999888899999999999999 899999999999999999964 455555
Q ss_pred c---ccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccC----------------------------CCC
Q 031924 76 F---VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAE----------------------------HSE 123 (150)
Q Consensus 76 ~---~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----------------------------~~~ 123 (150)
+ .+ |...+.++. +++++.+++++.||.|++||+++++....+.. |..
T Consensus 154 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 154 FGGVEG-HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp ECSTTS-CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred eccccc-ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 5 57 889999988 88999999999999999999987665444332 767
Q ss_pred cceeEEEEcCCccEEEecccccccc
Q 031924 124 YPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 124 ~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+|.+++|+ ++++++++.++.|.
T Consensus 233 -~v~~~~~~--~~~l~~~~~d~~i~ 254 (366)
T 3k26_A 233 -YVDCVRWL--GDLILSKSCENAIV 254 (366)
T ss_dssp -CCCEEEEE--TTEEEEECSSSEEE
T ss_pred -eEEEEEEc--CCEEEEEecCCEEE
Confidence 69999999 77999999887664
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-25 Score=151.03 Aligned_cols=145 Identities=10% Similarity=0.147 Sum_probs=118.2
Q ss_pred CeeecCc--ceEEEEcCCCeEEEEEcCCCeee----------------------------------------eeeccCCC
Q 031924 1 MTFAADA--MKLLGTSGDGTLSVCNLRKNTVQ----------------------------------------TRSEFSEE 38 (150)
Q Consensus 1 i~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~----------------------------------------~~~~~~~~ 38 (150)
++|+|++ ..+++++.|+.|++||+..++.. ....+|..
T Consensus 99 l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 178 (447)
T 3dw8_B 99 IRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY 178 (447)
T ss_dssp EEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred EEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence 4789987 78999999999999998764331 11357889
Q ss_pred cEEEEEEEeCCCEEEeecCCCeEEEEEccccccccc-------ccccccccceeEee-ecCC-CEEEEecCCCcEEEEec
Q 031924 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-------RFVGLSPNSVDALL-KLDE-DRVITGSENGLISLVGI 109 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~-------~~~~~~~~~v~~~~-~~~~-~~l~~~~~dg~i~~~d~ 109 (150)
.|.+++|+|++++|+++ .|+.|++||++..++... .+.+ |...+.++. +|++ +++++++.||.|++||+
T Consensus 179 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 179 HINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEE-LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp CCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGG-CCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred ceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccc-cCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 99999999999999999 799999999964444433 3567 888999988 8887 89999999999999999
Q ss_pred cCCee----eeeccCCCC-----------cceeEEEEcCCccEEEecccccccc
Q 031924 110 LPNRI----IQPIAEHSE-----------YPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 110 ~~~~~----~~~~~~~~~-----------~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
++++. ...+..|.. .+|.+++|+|+|++|++++. +.|.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~ 309 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVK 309 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEE
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEE
Confidence 98775 667766654 15999999999999999987 6553
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-25 Score=150.16 Aligned_cols=139 Identities=13% Similarity=0.114 Sum_probs=104.7
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCC-CEEEeecCCCeEEEEEccccccccc----------
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSD---------- 74 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~---------- 74 (150)
|+++|++++.|++|++||++++........|...+.+++|+|++ .+|++++.|++|++||++.......
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 78999999999999999999888887888889999999999986 4799999999999999853210000
Q ss_pred --------------ccccccccceeE------------------------------------------------------
Q 031924 75 --------------RFVGLSPNSVDA------------------------------------------------------ 86 (150)
Q Consensus 75 --------------~~~~~~~~~v~~------------------------------------------------------ 86 (150)
...+ |...+.+
T Consensus 235 ~~~s~~~~~~~~~~~~~~-~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 313 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSG-IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS 313 (393)
T ss_dssp CSEEEESGGGC------C-CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEEC
T ss_pred eEEecccccceeeeeccc-ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccc
Confidence 0000 1111100
Q ss_pred --------eee--cCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccc
Q 031924 87 --------LLK--LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 87 --------~~~--~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
+.. .++.++++|+.||.|++||+.+++.......|.. +|.+++|+|||++||+++.++.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~Gv 382 (393)
T 4gq1_A 314 LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEGSV 382 (393)
T ss_dssp SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESSEE
T ss_pred ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCCe
Confidence 111 1233567788899999999988887777767777 7999999999999999987764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-25 Score=159.39 Aligned_cols=147 Identities=15% Similarity=0.127 Sum_probs=129.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|++++|++++.|+.|++||+.+++.+..+..|.+.+.+++|+|++++|++++.||.+++||+.........+.+ |
T Consensus 61 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~ 139 (814)
T 3mkq_A 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-H 139 (814)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC-C
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC-C
Confidence 479999999999999999999999999999889999999999999999999999999999999999754466677777 8
Q ss_pred ccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC--CccEEEecccccccc
Q 031924 81 PNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS--VLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~~~~v~ 148 (150)
...+.++. +| +++.+++++.||.|++||+.+++....+..+...++..++|+| ++.++++++.++.|.
T Consensus 140 ~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 211 (814)
T 3mkq_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (814)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEE
T ss_pred CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEE
Confidence 89999988 77 7889999999999999999887766666555533699999999 999999999888764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=155.17 Aligned_cols=145 Identities=21% Similarity=0.246 Sum_probs=122.2
Q ss_pred CeeecC-cceEEEEcCCCeEEEEEcCCC-----eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccc
Q 031924 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKN-----TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (150)
Q Consensus 1 i~~~~~-~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~ 74 (150)
|+|+|+ +++|++++.|++|++||+.+. .....+.+|...|.+++|+|++++|++|+.|++|++||+. .+....
T Consensus 388 v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~-~~~~~~ 466 (694)
T 3dm0_A 388 IATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA-AGVSTR 466 (694)
T ss_dssp EECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEE
T ss_pred EEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC-CCccee
Confidence 467776 478999999999999999763 3456778999999999999999999999999999999996 456777
Q ss_pred ccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeee---ccCCCCcceeEEEEcCCc--cEEEecccccccc
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQP---IAEHSEYPIESLGIASVL--CFINSGFLSLNVN 148 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~---~~~~~~~~i~~~~~~~~~--~~l~s~~~~~~v~ 148 (150)
.+.+ |...|.++. +++++.|++++.|+.|++||......... ...|.. .|.+++|+|++ ..+++|+.++.|.
T Consensus 467 ~~~~-h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~d~~v~ 544 (694)
T 3dm0_A 467 RFVG-HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRD-WVSCVRFSPNTLQPTIVSASWDKTVK 544 (694)
T ss_dssp EEEC-CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSS-CEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred EEeC-CCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCC-cEEEEEEeCCCCcceEEEEeCCCeEE
Confidence 8888 999999988 89999999999999999999865543322 235666 59999999987 5899999888764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=143.53 Aligned_cols=140 Identities=12% Similarity=0.029 Sum_probs=111.9
Q ss_pred eeecCcceEEEEcCCCeEEEEEcC---------CCeeeeeec-cCCCcEEEEEEEe--CCCEEEeecCCCeEEEEEcccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLR---------KNTVQTRSE-FSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~ 69 (150)
.|+|+ +++++.|++|++|+.. +++.+.... .|.+.+.+++|+| +++++++++.||++++||++.
T Consensus 83 ~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~- 158 (343)
T 3lrv_A 83 GEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED- 158 (343)
T ss_dssp CCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS-
T ss_pred eeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC-
Confidence 46666 8899999999999765 444343333 5667899999999 999999999999999999964
Q ss_pred cccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeee-eeccC-CCCcceeEEEEcCCccEEEecccccc
Q 031924 70 KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRII-QPIAE-HSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
++........+...+.++. +|++.++++|+.||.|++||+++++.+ ..+.. |.. +|.+++|+|++.+|++++.+ .
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~l~fs~~g~~l~s~~~~-~ 236 (343)
T 3lrv_A 159 DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA-KIKEVKFADNGYWMVVECDQ-T 236 (343)
T ss_dssp SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS-CEEEEEECTTSSEEEEEESS-B
T ss_pred CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC-CEEEEEEeCCCCEEEEEeCC-e
Confidence 3444444331555788887 899999999999999999999998876 67777 877 79999999999999999843 4
Q ss_pred c
Q 031924 147 V 147 (150)
Q Consensus 147 v 147 (150)
|
T Consensus 237 v 237 (343)
T 3lrv_A 237 V 237 (343)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-24 Score=142.68 Aligned_cols=145 Identities=12% Similarity=0.131 Sum_probs=123.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC-----CeEEEEEcccccc----
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKD---- 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~---- 71 (150)
++|+|++++|++++.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.+ +.+++||+.....
T Consensus 80 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 80 IDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceee
Confidence 4789999999999999999999999998887776 77899999999999999999998 9999999864321
Q ss_pred ------ccccccccccc--ceeEee-ecCCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 72 ------CSDRFVGLSPN--SVDALL-KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 72 ------~~~~~~~~~~~--~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
....+.. +.. .+.++. +++++.+++++.||.|++||+++ .+.+..+..|.. +|.+++|+|++++|+++
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~ 236 (369)
T 3zwl_B 159 TKVSEEPIHKIIT-HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITS 236 (369)
T ss_dssp EEECSSCSEEEEC-CTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEE
T ss_pred cccccceeeeccC-CcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEe
Confidence 2222333 444 777777 88999999999999999999988 778888888877 69999999999999999
Q ss_pred ccccccc
Q 031924 142 FLSLNVN 148 (150)
Q Consensus 142 ~~~~~v~ 148 (150)
+.++.|.
T Consensus 237 ~~d~~i~ 243 (369)
T 3zwl_B 237 SRDTNSF 243 (369)
T ss_dssp ETTSEEE
T ss_pred cCCceEE
Confidence 9887664
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-25 Score=149.41 Aligned_cols=142 Identities=7% Similarity=0.126 Sum_probs=120.8
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeecc--CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc-cc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-GL 79 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-~~ 79 (150)
++|+++++++++.|+.|++||+++++.+..+.. |...+.+++|+|++++|++++.||.|++||++. ++....+. .
T Consensus 178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~- 255 (437)
T 3gre_A 178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSFG- 255 (437)
T ss_dssp ECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBCT-
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEecC-
Confidence 457899999999999999999999998888887 788999999999999999999999999999974 56666654 5
Q ss_pred cccceeEee-----ecCCCEEEEecCCCcEEEEeccCCeeeeeccC--------------------------CCCcceeE
Q 031924 80 SPNSVDALL-----KLDEDRVITGSENGLISLVGILPNRIIQPIAE--------------------------HSEYPIES 128 (150)
Q Consensus 80 ~~~~v~~~~-----~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--------------------------~~~~~i~~ 128 (150)
|...|.++. ++++.++++++.||.|++||+++++.+..+.. |.. +|.+
T Consensus 256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~v~~ 334 (437)
T 3gre_A 256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLN-ALST 334 (437)
T ss_dssp TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGG-GGCC
T ss_pred CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCC-ceEE
Confidence 677888873 45678999999999999999998887666643 333 4888
Q ss_pred EEEcCCccEEEecccccccc
Q 031924 129 LGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 129 ~~~~~~~~~l~s~~~~~~v~ 148 (150)
++|+ ++++|++|+.++.|.
T Consensus 335 l~~~-~~~~l~s~~~d~~i~ 353 (437)
T 3gre_A 335 ISVS-NDKILLTDEATSSIV 353 (437)
T ss_dssp EEEE-TTEEEEEEGGGTEEE
T ss_pred EEEC-CceEEEecCCCCeEE
Confidence 9999 789999999988764
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=146.12 Aligned_cols=146 Identities=11% Similarity=0.095 Sum_probs=122.3
Q ss_pred CeeecCcc-eEEEEcCCCeEEEEEcCCCee-------eeeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEccccc-
Q 031924 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTV-------QTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK- 70 (150)
Q Consensus 1 i~~~~~~~-~l~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~- 70 (150)
++|+|+++ +|++++.||.|++||+..+.. ...+..|...+.+++|+| ++..|++++.|+.|++||++...
T Consensus 187 l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~ 266 (430)
T 2xyi_A 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT 266 (430)
T ss_dssp EEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred EEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence 47899888 999999999999999987321 345668889999999999 68899999999999999997542
Q ss_pred -ccccccccccccceeEee-ecCCC-EEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCcc-EEEeccccc
Q 031924 71 -DCSDRFVGLSPNSVDALL-KLDED-RVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLC-FINSGFLSL 145 (150)
Q Consensus 71 -~~~~~~~~~~~~~v~~~~-~~~~~-~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~~~ 145 (150)
+....+.. |...+.++. ++++. ++++++.||.|++||++. .+.+..+..|.. +|.+++|+|++. +|++++.++
T Consensus 267 ~~~~~~~~~-~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~ 344 (430)
T 2xyi_A 267 SKPSHTVDA-HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDR 344 (430)
T ss_dssp SSCSEEEEC-CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTS
T ss_pred CcceeEeec-CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCC
Confidence 45556667 889999988 77776 788999999999999987 556778878877 699999999985 699998887
Q ss_pred ccc
Q 031924 146 NVN 148 (150)
Q Consensus 146 ~v~ 148 (150)
.|.
T Consensus 345 ~i~ 347 (430)
T 2xyi_A 345 RLH 347 (430)
T ss_dssp CCE
T ss_pred cEE
Confidence 764
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=146.73 Aligned_cols=143 Identities=8% Similarity=0.142 Sum_probs=121.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC----CeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccc-----
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFK----- 70 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~----- 70 (150)
++|+|++++|++++.|+.|++||+.. .+....+..|...|.+++|+|+ +++|++++.|+.|++||++...
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc
Confidence 47999999999999999999999987 3477788899999999999998 8999999999999999996443
Q ss_pred -c--cccccccccccceeEee-ecC-CCEEEEecCCCcEEEEeccCCeeeeeccCC------CCcceeEEEEcCCc-cEE
Q 031924 71 -D--CSDRFVGLSPNSVDALL-KLD-EDRVITGSENGLISLVGILPNRIIQPIAEH------SEYPIESLGIASVL-CFI 138 (150)
Q Consensus 71 -~--~~~~~~~~~~~~v~~~~-~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------~~~~i~~~~~~~~~-~~l 138 (150)
. ....... |...+.++. +++ +.++++++.|+.|++||+++++.+..+..+ .. ++.+++|+|++ .++
T Consensus 153 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l 230 (416)
T 2pm9_A 153 YTPLTPGQSMS-SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQ-QLSVVEWHPKNSTRV 230 (416)
T ss_dssp CCCBCCCCSCC-SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCC-CEEEEEECSSCTTEE
T ss_pred ccccccccccC-CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCC-ceEEEEECCCCCCEE
Confidence 1 1122346 788898888 777 789999999999999999999888887665 45 69999999997 689
Q ss_pred Eeccccc
Q 031924 139 NSGFLSL 145 (150)
Q Consensus 139 ~s~~~~~ 145 (150)
++++.++
T Consensus 231 ~~~~~d~ 237 (416)
T 2pm9_A 231 ATATGSD 237 (416)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 9998876
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.1e-25 Score=149.07 Aligned_cols=147 Identities=12% Similarity=0.137 Sum_probs=115.4
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCC---Ceee--eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc--cccc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRK---NTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--FKDC 72 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~---~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~--~~~~ 72 (150)
++|+| ++++|++++.|++|++||+.+ +... .....|...|.+++|+|++++|++++.||.|++||++. .++.
T Consensus 69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 148 (437)
T 3gre_A 69 SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESE 148 (437)
T ss_dssp EEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTE
T ss_pred EEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCce
Confidence 47999 999999999999999999876 4311 11125889999999999999999999999999999841 2222
Q ss_pred cccccc---------c--cccceeEee---ecCCCEEEEecCCCcEEEEeccCCeeeeeccC--CCCcceeEEEEcCCcc
Q 031924 73 SDRFVG---------L--SPNSVDALL---KLDEDRVITGSENGLISLVGILPNRIIQPIAE--HSEYPIESLGIASVLC 136 (150)
Q Consensus 73 ~~~~~~---------~--~~~~v~~~~---~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~ 136 (150)
...+.. . +...+.++. .++++++++++.|+.|++||+++++.+..+.. |.. +|.+++|+|+++
T Consensus 149 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~ 227 (437)
T 3gre_A 149 VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG-AVSSICIDEECC 227 (437)
T ss_dssp EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTSC
T ss_pred eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCCC
Confidence 222221 0 122333333 35788999999999999999999998888876 667 699999999999
Q ss_pred EEEecccccccc
Q 031924 137 FINSGFLSLNVN 148 (150)
Q Consensus 137 ~l~s~~~~~~v~ 148 (150)
+|++|+.++.|.
T Consensus 228 ~l~s~~~dg~i~ 239 (437)
T 3gre_A 228 VLILGTTRGIID 239 (437)
T ss_dssp EEEEEETTSCEE
T ss_pred EEEEEcCCCeEE
Confidence 999999998764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-24 Score=142.61 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=118.7
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCC-EEEeecCCCeEEEEEccccccccccc--------
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRF-------- 76 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~-------- 76 (150)
++.++++++.++.|++||+++++....+..|...+.+++|+|+++ .+++++.||.|++||++........+
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 234 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence 556999999999999999999988888899999999999999988 58899999999999996443232222
Q ss_pred -------ccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe-----------------------------------
Q 031924 77 -------VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR----------------------------------- 113 (150)
Q Consensus 77 -------~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~----------------------------------- 113 (150)
.. |...+.++. +++++++++++.||.|++||+.+++
T Consensus 235 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (408)
T 4a11_B 235 QAVESANTA-HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG 313 (408)
T ss_dssp CCTTTSSCS-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET
T ss_pred eeecccccc-ccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC
Confidence 45 778899888 8899999999999999999986543
Q ss_pred ------------eeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 114 ------------IIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 114 ------------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+..+..|.. +|.+++|+|++++|++|+.++.|.
T Consensus 314 ~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~ 359 (408)
T 4a11_B 314 STIAVYTVYSGEQITMLKGHYK-TVDCCVFQSNFQELYSGSRDCNIL 359 (408)
T ss_dssp TEEEEEETTTCCEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEE
T ss_pred CEEEEEECcCCcceeeeccCCC-eEEEEEEcCCCCEEEEECCCCeEE
Confidence 3444556777 699999999999999999998774
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-24 Score=144.21 Aligned_cols=143 Identities=17% Similarity=0.218 Sum_probs=127.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.|+|++ .+++++.++.|++||+++++....+..|...+.+++|+|++++|++++.|+.|++||++ .++....+.. |
T Consensus 212 ~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~-~ 288 (425)
T 1r5m_A 212 VEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG-NGNSQNCFYG-H 288 (425)
T ss_dssp CEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS-SBSCSEEECC-C
T ss_pred EEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC-CCccceEecC-C
Confidence 4577764 57788899999999999998888888999999999999999999999999999999986 4566777777 8
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.++. ++++ .+++++.|+.|++||+.+++.+..+..|.. ++.+++|+|++++|++++.++.|.
T Consensus 289 ~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~dg~i~ 355 (425)
T 1r5m_A 289 SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV-PIFAGRISQDGQKYAVAFMDGQVN 355 (425)
T ss_dssp SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc-cEEEEEEcCCCCEEEEEECCCeEE
Confidence 88999888 7777 999999999999999999998888888877 699999999999999999888764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-24 Score=146.69 Aligned_cols=144 Identities=10% Similarity=0.106 Sum_probs=121.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeee----eeccCCCcEEEEEEEeC---CCEEEeecCCCeEEEEEcccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT----RSEFSEEELTSVVLMKN---GRKVVCGSQSGTVLLYSWGYFKDCS 73 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~i~~~~~~~~~~ 73 (150)
++|+|++++|++++.++.+++|++..++... .+.+|...+.+++|+|+ +++|++++.|+.|++||++. ++..
T Consensus 155 ~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~ 233 (450)
T 2vdu_B 155 ISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIV 233 (450)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCE
T ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-Ccee
Confidence 4799999999999999999999998876443 66788899999999999 99999999999999999963 4555
Q ss_pred cc-cccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCC------------------------CCccee
Q 031924 74 DR-FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEH------------------------SEYPIE 127 (150)
Q Consensus 74 ~~-~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------------------------~~~~i~ 127 (150)
.. +.+ |...|.++. + ++++|++++.|+.|++||+.+++.+..+..+ ....+.
T Consensus 234 ~~~~~~-h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 234 DKWLFG-HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp EEECCC-CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eeeecC-CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 55 457 889999988 7 9999999999999999999998877766421 123589
Q ss_pred EEEEcCCccEEEecc-ccccc
Q 031924 128 SLGIASVLCFINSGF-LSLNV 147 (150)
Q Consensus 128 ~~~~~~~~~~l~s~~-~~~~v 147 (150)
.++|+|+++++++++ .++.|
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i 332 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCI 332 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEE
T ss_pred EEEEeCCCCEEEEEECCCCeE
Confidence 999999999999887 56554
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=150.08 Aligned_cols=136 Identities=15% Similarity=0.098 Sum_probs=109.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCC-----cEEEEEEEeCCCEEEeecCCCeEEEEEccccccc---
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-----ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC--- 72 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~--- 72 (150)
++|+|+|+.|++++.||.+++||.+. .+..+. |.. .+.+++|+|+|++|++|+.||+|++||+.. +..
T Consensus 91 vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~-~~l~~~ 166 (588)
T 2j04_A 91 CKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK-NSENTP 166 (588)
T ss_dssp EEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC-CTTTCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC-Cccccc
Confidence 57999999999999999999999544 555555 554 599999999999999999999999999864 332
Q ss_pred ----cccc----ccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCee---eeec-cCCCCcceeEEEEcCCccEEE
Q 031924 73 ----SDRF----VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRI---IQPI-AEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 73 ----~~~~----~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~-~~~~~~~i~~~~~~~~~~~l~ 139 (150)
+.++ .+ |..+|.++. +|+| +++++.|+.|++||+..++. .+.+ ..|.. .|.+++|+ |+.+|
T Consensus 167 ~~i~l~ti~~~~~g-h~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~-~V~svaFs--g~~LA 240 (588)
T 2j04_A 167 EFYFESSIRLSDAG-SKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR-KITDLKIV--DYKVV 240 (588)
T ss_dssp CCEEEEEEECSCTT-CCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS-CCCCEEEE--TTEEE
T ss_pred cceeeeeeeccccc-ccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccC-cEEEEEEE--CCEEE
Confidence 3454 56 778999998 8887 88888999999999987663 3455 36666 59999999 68888
Q ss_pred eccccccc
Q 031924 140 SGFLSLNV 147 (150)
Q Consensus 140 s~~~~~~v 147 (150)
+++. +.|
T Consensus 241 Sa~~-~tI 247 (588)
T 2j04_A 241 LTCP-GYV 247 (588)
T ss_dssp EECS-SEE
T ss_pred EEeC-CeE
Confidence 8873 544
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-24 Score=154.59 Aligned_cols=146 Identities=12% Similarity=0.136 Sum_probs=125.2
Q ss_pred CeeecC--cceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeC--CCEEEeecCCCeEEEEEccccc-ccc
Q 031924 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCS 73 (150)
Q Consensus 1 i~~~~~--~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~-~~~ 73 (150)
++|+|+ +++|++++.||.|++||+.+++ .......|...+.+++|+|+ ++.+++++.||.|++||++... ...
T Consensus 59 l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 59 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp EEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC
T ss_pred EEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce
Confidence 468887 8999999999999999999986 56777889999999999999 9999999999999999997442 233
Q ss_pred cccccccccceeEee-ec-------------CCCEEEEecCCCcEEEEeccCC----eeeeeccCCCCcceeEEEEcCC-
Q 031924 74 DRFVGLSPNSVDALL-KL-------------DEDRVITGSENGLISLVGILPN----RIIQPIAEHSEYPIESLGIASV- 134 (150)
Q Consensus 74 ~~~~~~~~~~v~~~~-~~-------------~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~~~~~~~i~~~~~~~~- 134 (150)
..+.+ |...+.++. +| +++.+++++.||.|++||++++ .....+..|.. +|.+++|+|+
T Consensus 139 ~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~ 216 (753)
T 3jro_A 139 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTV 216 (753)
T ss_dssp EEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCC
T ss_pred eEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCC
Confidence 44556 888899887 66 4889999999999999999876 45667778888 6999999999
Q ss_pred --ccEEEecccccccc
Q 031924 135 --LCFINSGFLSLNVN 148 (150)
Q Consensus 135 --~~~l~s~~~~~~v~ 148 (150)
+.++++|+.++.|.
T Consensus 217 ~~~~~l~s~s~Dg~I~ 232 (753)
T 3jro_A 217 LLRSYLASVSQDRTCI 232 (753)
T ss_dssp SSSEEEEEEESSSCEE
T ss_pred CCCCEEEEEecCCEEE
Confidence 99999999988764
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=158.13 Aligned_cols=142 Identities=15% Similarity=0.060 Sum_probs=120.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccc-------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS------- 73 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~------- 73 (150)
++|+| +++|++++.|++|++||+++++.+..+. +.+.|++++|+|+++++++|+.||+|++||++.. +..
T Consensus 64 l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~-~~~~~~i~~~ 140 (902)
T 2oaj_A 64 MRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD-QLSSFKLDNL 140 (902)
T ss_dssp EEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT-EEEEEEECCH
T ss_pred EEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC-ccccceeccc
Confidence 47899 7899999999999999999998877765 6678999999999999999999999999998643 221
Q ss_pred ----cccccccccceeEee-ecC-CCEEEEecCCCcEEEEeccCCeeeeeccCC------------------CCcceeEE
Q 031924 74 ----DRFVGLSPNSVDALL-KLD-EDRVITGSENGLISLVGILPNRIIQPIAEH------------------SEYPIESL 129 (150)
Q Consensus 74 ----~~~~~~~~~~v~~~~-~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------------------~~~~i~~~ 129 (150)
..+.+ |...|.++. +|+ +..+++++.|+.| +||+++++.++.+..| .. .|.++
T Consensus 141 ~~~~~~~~~-h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~-~V~~v 217 (902)
T 2oaj_A 141 QKSSFFPAA-RLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP-KVIQS 217 (902)
T ss_dssp HHHHTCSSS-CCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC-CEEEE
T ss_pred ccccccccc-CCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC-CeEEE
Confidence 23456 888999988 774 4789999999999 9999999888777554 34 59999
Q ss_pred EEcCCccEEEecccccccc
Q 031924 130 GIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 130 ~~~~~~~~l~s~~~~~~v~ 148 (150)
+|+|+|++|++|+.++.|.
T Consensus 218 ~fspdg~~lasgs~Dg~i~ 236 (902)
T 2oaj_A 218 LYHPNSLHIITIHEDNSLV 236 (902)
T ss_dssp EECTTSSEEEEEETTCCEE
T ss_pred EEcCCCCEEEEEECCCeEE
Confidence 9999999999999988764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.7e-24 Score=137.61 Aligned_cols=142 Identities=15% Similarity=0.095 Sum_probs=123.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc--cccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~ 78 (150)
++| |++++|++++.||.|++||+.+++....+..|...+.+++|+|+++++++++.|+.+++|++.... +....+.+
T Consensus 24 ~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~ 102 (313)
T 3odt_A 24 VVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIG 102 (313)
T ss_dssp EEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECC
T ss_pred EEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhh
Confidence 357 889999999999999999999998888888899999999999999999999999999999986432 44566677
Q ss_pred ccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC-CccEEEecccccccc
Q 031924 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS-VLCFINSGFLSLNVN 148 (150)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~~~~v~ 148 (150)
|...+.++.. +++.+++++.|+.|++|| .++....+..|.. ++.+++|.| ++.++++++.++.|.
T Consensus 103 -~~~~i~~~~~-~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d~~i~ 168 (313)
T 3odt_A 103 -HQGNVCSLSF-QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA-SVWDAKVVSFSENKFLTASADKTIK 168 (313)
T ss_dssp -CSSCEEEEEE-ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS-CEEEEEEEETTTTEEEEEETTSCEE
T ss_pred -cccCEEEEEe-cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC-ceeEEEEccCCCCEEEEEECCCCEE
Confidence 8888888865 678999999999999999 6677777778877 699999998 999999999988764
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=141.73 Aligned_cols=110 Identities=13% Similarity=0.168 Sum_probs=93.2
Q ss_pred CeeecC---cceEEEEcCCCeEEEEEcCC-Ceee-eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc
Q 031924 1 MTFAAD---AMKLLGTSGDGTLSVCNLRK-NTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~---~~~l~~~~~d~~i~i~d~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
++|+|+ +++|++++.|+.|++||+++ ++.. ..+..|...|.+++|+|++++|++++.||.|++||++. ++...
T Consensus 45 ~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~- 122 (368)
T 3mmy_A 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS-NQAIQ- 122 (368)
T ss_dssp EEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEE-
T ss_pred EEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC-CCcee-
Confidence 478998 59999999999999999997 5444 67788999999999999999999999999999999863 34333
Q ss_pred cccccccceeEee---ecCCCEEEEecCCCcEEEEeccCCe
Q 031924 76 FVGLSPNSVDALL---KLDEDRVITGSENGLISLVGILPNR 113 (150)
Q Consensus 76 ~~~~~~~~v~~~~---~~~~~~l~~~~~dg~i~~~d~~~~~ 113 (150)
+.. |...+.++. .++++++++++.|+.|++||+++++
T Consensus 123 ~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 123 IAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred ecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence 456 888898876 4678889999999999999987654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.8e-24 Score=143.11 Aligned_cols=142 Identities=19% Similarity=0.178 Sum_probs=122.2
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeecc-CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
+++++..+++++.|+.|++||+.+++....... |...|.+++|+|++++|++++.||.|++||+. .++....+.+ |.
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~-~~ 176 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE-SQTKLRTMAG-HQ 176 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEECC-CS
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc-CCeEEEEecC-CC
Confidence 344556788888999999999999987766654 78899999999999999999999999999986 4467777778 99
Q ss_pred cceeEeeecCCCEEEEecCCCcEEEEecc-CCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 82 NSVDALLKLDEDRVITGSENGLISLVGIL-PNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
..+.++.. +++.+++++.||.|++||++ .......+..|.. .|.+++|+|++++|++|+.++.|.
T Consensus 177 ~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 177 ARVGCLSW-NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS-EVCGLAWRSDGLQLASGGNDNVVQ 242 (401)
T ss_dssp SCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred CceEEEEE-CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCC-CeeEEEEcCCCCEEEEEeCCCeEE
Confidence 99988875 57899999999999999998 4567777878888 699999999999999999988764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=150.64 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=121.4
Q ss_pred cceEEEEcC-CCeEEEEEcCCCeee-eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccce
Q 031924 7 AMKLLGTSG-DGTLSVCNLRKNTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (150)
Q Consensus 7 ~~~l~~~~~-d~~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v 84 (150)
++++++++. |+.|++||+.+++.. ..+..|...+.+++|+|++++|++++.||.|++||+.. ++....+.+.|...+
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~v 534 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSKI 534 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSCE
T ss_pred CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCce
Confidence 678888888 999999999987655 66678889999999999999999999999999999964 455555553378889
Q ss_pred eEee-ec----------CCCEEEEecCCCcEEEEeccCC-eeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 85 DALL-KL----------DEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 85 ~~~~-~~----------~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.++. +| ++++|++++.||.|++||+.++ +.+..+..|.. +|.+++|+|+++ |++++.++.|.
T Consensus 535 ~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~-l~s~~~d~~v~ 608 (615)
T 1pgu_A 535 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-GVNNLLWETPST-LVSSGADACIK 608 (615)
T ss_dssp EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT-CEEEEEEEETTE-EEEEETTSCEE
T ss_pred eEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCcc-ceEEEEEcCCCC-eEEecCCceEE
Confidence 9988 88 8999999999999999999887 78888888988 699999999999 99999988764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=137.24 Aligned_cols=139 Identities=15% Similarity=0.129 Sum_probs=119.0
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCCCeeeeeecc-CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
.|.| +++.+++++.|+.|++|| .++....+.. +...+.+++|+|++. +++++.|+.+++||++ .++....+.+
T Consensus 149 ~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~-~~~~~~~~~~- 223 (313)
T 3odt_A 149 KVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMH-TGDVLRTYEG- 223 (313)
T ss_dssp EEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETT-TCCEEEEEEC-
T ss_pred EEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECC-chhhhhhhhc-
Confidence 4666 899999999999999999 3445555665 888999999999998 9999999999999996 4577778888
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|...+.++. ++++ .+++++.||.|++||+.+++.+..+..|.. +|.+++|+|++++ ++++.++.|.
T Consensus 224 ~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~~-~~~~~dg~i~ 290 (313)
T 3odt_A 224 HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI-SIWSVDCMSNGDI-IVGSSDNLVR 290 (313)
T ss_dssp CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS-CEEEEEECTTSCE-EEEETTSCEE
T ss_pred CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc-eEEEEEEccCCCE-EEEeCCCcEE
Confidence 999999988 7777 688999999999999999999999888877 6999999999994 5577777664
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=142.83 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=116.8
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCe-eeeeeccCCC----cEEEEE----EEeCCCEEEeecCCCeEEEEEccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEE----ELTSVV----LMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 72 (150)
+|+|++++|++++.|+.|++||+++++ ....+..+.+ .+.+++ |+|+++++++++.|+.|++||++.. +.
T Consensus 124 ~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~ 202 (357)
T 3i2n_A 124 GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM-AL 202 (357)
T ss_dssp GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT-EE
T ss_pred ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC-ce
Confidence 578999999999999999999999876 5666655443 788888 6789999999999999999999643 33
Q ss_pred ccccccccccceeEee-ec---CCCEEEEecCCCcEEEEeccCCeeeeecc-----CCCCcceeEEEEcCCcc-EEEecc
Q 031924 73 SDRFVGLSPNSVDALL-KL---DEDRVITGSENGLISLVGILPNRIIQPIA-----EHSEYPIESLGIASVLC-FINSGF 142 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~-~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~-~l~s~~ 142 (150)
. .... |...+.++. ++ +++.+++++.||.|++||+++++....+. .|.. +|.+++|+|+++ ++++|+
T Consensus 203 ~-~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~ 279 (357)
T 3i2n_A 203 R-WETN-IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAG 279 (357)
T ss_dssp E-EEEE-CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEE
T ss_pred e-eecC-CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEe
Confidence 2 3345 788899888 77 89999999999999999998776555443 7777 699999999998 899999
Q ss_pred cccccc
Q 031924 143 LSLNVN 148 (150)
Q Consensus 143 ~~~~v~ 148 (150)
.++.|.
T Consensus 280 ~dg~i~ 285 (357)
T 3i2n_A 280 GAGGLH 285 (357)
T ss_dssp TTSEEE
T ss_pred CCCcEE
Confidence 988764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=147.51 Aligned_cols=147 Identities=12% Similarity=0.155 Sum_probs=119.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCC----eeeeeeccCCCc-EEEEEEEe--CCCEEEeecCCCeEEEEEcccc----
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKN----TVQTRSEFSEEE-LTSVVLMK--NGRKVVCGSQSGTVLLYSWGYF---- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~---- 69 (150)
++|+|++++|++++ ++.|.+||++++ +....+.+|... |.+++|+| ++++|++++.||.|++||+...
T Consensus 24 ~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 102 (615)
T 1pgu_A 24 LSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN 102 (615)
T ss_dssp CEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT
T ss_pred EEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc
Confidence 58999999999997 789999999988 788889999999 99999999 9999999999999999998421
Q ss_pred ---ccccccccc-------------------------------------------ccccceeEee-ecCCC-EEEEecCC
Q 031924 70 ---KDCSDRFVG-------------------------------------------LSPNSVDALL-KLDED-RVITGSEN 101 (150)
Q Consensus 70 ---~~~~~~~~~-------------------------------------------~~~~~v~~~~-~~~~~-~l~~~~~d 101 (150)
.+....+.. .|...+.++. +++++ .+++++.|
T Consensus 103 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 182 (615)
T 1pgu_A 103 SVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 182 (615)
T ss_dssp EEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETT
T ss_pred cccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCC
Confidence 122233332 0334445544 45554 78888899
Q ss_pred CcEEEEeccCCeeeeeccCCCCc--ceeEEEEcCC-ccEEEecccccccc
Q 031924 102 GLISLVGILPNRIIQPIAEHSEY--PIESLGIASV-LCFINSGFLSLNVN 148 (150)
Q Consensus 102 g~i~~~d~~~~~~~~~~~~~~~~--~i~~~~~~~~-~~~l~s~~~~~~v~ 148 (150)
+.|++||+.+++.+..+..|... +|.+++|+|+ ++++++++.++.|.
T Consensus 183 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 232 (615)
T 1pgu_A 183 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 232 (615)
T ss_dssp TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence 99999999999998888877661 3999999999 99999999888764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=155.39 Aligned_cols=146 Identities=16% Similarity=0.090 Sum_probs=124.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcC--CCeeeeeeccCCCcEEEEEEEeC--CCEEEeecCCCeEEEEEccccc-ccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~-~~~~~ 75 (150)
++|+|+++++++++.||.|++||+. +++....+.+|.+.|.+++|+|+ +++|++++.||.|++||+.... .....
T Consensus 15 l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 94 (753)
T 3jro_A 15 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 94 (753)
T ss_dssp ECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred EEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccc
Confidence 4789999999999999999999998 44567788899999999999988 9999999999999999986432 25566
Q ss_pred cccccccceeEee-ecC--CCEEEEecCCCcEEEEeccCCe--eeeeccCCCCcceeEEEEcC-------------CccE
Q 031924 76 FVGLSPNSVDALL-KLD--EDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLGIAS-------------VLCF 137 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~--~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~-------------~~~~ 137 (150)
+.+ |...|.++. +|+ ++.+++++.||.|++||++.+. ....+..|.. +|.+++|+| ++.+
T Consensus 95 ~~~-h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~-~v~~l~~~p~~~~~~~~~~~~~d~~~ 172 (753)
T 3jro_A 95 HAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAPATIEEDGEHNGTKESRK 172 (753)
T ss_dssp ECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS-CEEEEEECCCC---------CGGGCC
T ss_pred ccC-CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC-ceEEEEecCcccccccccccCCCCCE
Confidence 677 899999988 777 8999999999999999998763 3344557777 699999999 5999
Q ss_pred EEecccccccc
Q 031924 138 INSGFLSLNVN 148 (150)
Q Consensus 138 l~s~~~~~~v~ 148 (150)
+++|+.++.|.
T Consensus 173 l~sgs~dg~I~ 183 (753)
T 3jro_A 173 FVTGGADNLVK 183 (753)
T ss_dssp EEEEETTSCEE
T ss_pred EEEEECCCeEE
Confidence 99999988764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-24 Score=143.43 Aligned_cols=145 Identities=12% Similarity=0.118 Sum_probs=120.5
Q ss_pred CeeecC----c---ceEEEEcCCCeEEEEEcCCCee-----eeeeccC-----CCcEEEEEEE----eCCCE-EEeecCC
Q 031924 1 MTFAAD----A---MKLLGTSGDGTLSVCNLRKNTV-----QTRSEFS-----EEELTSVVLM----KNGRK-VVCGSQS 58 (150)
Q Consensus 1 i~~~~~----~---~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d 58 (150)
++|+|+ + ++|++++.|+.|++||+.+++. ...+..| ...+.+++|+ |+++. |++++.|
T Consensus 68 ~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 147 (397)
T 1sq9_A 68 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK 147 (397)
T ss_dssp EEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred EEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC
Confidence 468888 8 9999999999999999998875 7777777 4899999999 99999 9999999
Q ss_pred CeEEEEEcccc-----ccccc-----cc-------ccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccC
Q 031924 59 GTVLLYSWGYF-----KDCSD-----RF-------VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (150)
Q Consensus 59 ~~i~i~~~~~~-----~~~~~-----~~-------~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 120 (150)
|.|++||++.. ++... .+ .. |...+.++. ++++ .+++++.|+.|++||+++++.+..+..
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT-PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES 225 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSS-SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccC-CCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec
Confidence 99999999740 33443 44 34 677888887 8888 999999999999999999998888877
Q ss_pred ---C---CCcceeEEEEcCCccEEEecccc---cccc
Q 031924 121 ---H---SEYPIESLGIASVLCFINSGFLS---LNVN 148 (150)
Q Consensus 121 ---~---~~~~i~~~~~~~~~~~l~s~~~~---~~v~ 148 (150)
| .. +|.+++|+|++++|++++.+ +.|.
T Consensus 226 ~~~h~~~~~-~i~~i~~~~~~~~l~~~~~d~~~g~i~ 261 (397)
T 1sq9_A 226 QHSMINNSN-SIRSVKFSPQGSLLAIAHDSNSFGCIT 261 (397)
T ss_dssp CC---CCCC-CEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred cccccccCC-ccceEEECCCCCEEEEEecCCCCceEE
Confidence 7 77 69999999999999999988 6654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-23 Score=141.64 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=119.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeee--ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS--EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
|+|+++ +.|++| .|++|++||..+++....+ ..|...|++++|+|+|++|++|+.||+|++||+. .++.+..+.+
T Consensus 111 l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~-~~~~~~~~~~ 187 (420)
T 4gga_A 111 VDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ-QQKRLRNMTS 187 (420)
T ss_dssp EEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEECC
T ss_pred EEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC-CCcEEEEEeC
Confidence 468865 577776 5899999999999876554 4667789999999999999999999999999996 4577788888
Q ss_pred ccccceeEeeecCCCEEEEecCCCcEEEEeccCC-eeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|...+.++. .++..+++++.|+.+++||.... ..+..+..|.. .+..+.++|+++++++++.++.+.
T Consensus 188 -h~~~v~~~s-~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~-~~~~~~~~~~g~~l~s~~~D~~v~ 255 (420)
T 4gga_A 188 -HSARVGSLS-WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ-EVCGLRWAPDGRHLASGGNDNLVN 255 (420)
T ss_dssp -CSSCEEEEE-EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred -CCCceEEEe-eCCCEEEEEeCCCceeEeeecccceeeEEeccccc-ceeeeeecCCCCeeeeeeccccce
Confidence 988887764 46789999999999999998764 45677778888 599999999999999999887764
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=142.57 Aligned_cols=143 Identities=11% Similarity=0.114 Sum_probs=117.9
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCe----eeeeeccCCCcEEEEEEEeCCC-EEEe--ecCCCeEEEEEccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNT----VQTRSEFSEEELTSVVLMKNGR-KVVC--GSQSGTVLLYSWGYFKDCSD 74 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~d~~i~i~~~~~~~~~~~ 74 (150)
.|+|+++++++++.|+.+++|+...++ .+.....|...|.+++|+|.+. .+++ |+.|++|++||+. .++...
T Consensus 237 ~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~-t~~~~~ 315 (420)
T 4gga_A 237 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC-SGACLS 315 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT-TTEEEE
T ss_pred eecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC-ccccce
Confidence 578999999999999999999998765 2455677888999999999754 4444 5689999999996 446666
Q ss_pred ccccccccceeEee-ecCCCEEEEec--CCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+.. +. .+.++. .++++.+++++ .|+.|++||+.+++.+..+.+|.+ +|.+++|+|||++|+||+.++.|.
T Consensus 316 ~~~~-~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~-~V~~l~~spdg~~l~S~s~D~tvr 389 (420)
T 4gga_A 316 AVDA-HS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLR 389 (420)
T ss_dssp EEEC-SS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEE
T ss_pred eecc-cc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEE
Confidence 6665 44 455554 88888877654 789999999999999999999988 699999999999999999998764
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-23 Score=138.81 Aligned_cols=144 Identities=9% Similarity=0.024 Sum_probs=114.8
Q ss_pred eeecCcceE-EEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCC-------------------------------
Q 031924 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG------------------------------- 49 (150)
Q Consensus 2 ~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~------------------------------- 49 (150)
++.++++.+ ++++.|++|++||..+++.+..+. +...+.+++++++.
T Consensus 65 ~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 143 (355)
T 3vu4_A 65 RMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVC 143 (355)
T ss_dssp EECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEE
T ss_pred EEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceE
Confidence 456666666 456788999999999998877665 45678888877642
Q ss_pred ----CEEEe--ecCCCeEEEEEccccc--------------c-cccccccccccceeEee-ecCCCEEEEecCCCc-EEE
Q 031924 50 ----RKVVC--GSQSGTVLLYSWGYFK--------------D-CSDRFVGLSPNSVDALL-KLDEDRVITGSENGL-ISL 106 (150)
Q Consensus 50 ----~~l~~--~~~d~~i~i~~~~~~~--------------~-~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~-i~~ 106 (150)
..++. |+.||.|++||++... . ....+.+ |...|.++. +|++++|++++.|++ |++
T Consensus 144 ~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~-h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 144 EFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA-HTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp EEETTEEEEEESSCTTCEEEEECCC------------------CCEEECC-CSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred EEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEc-cCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 23333 6788999999986422 0 1566778 999999998 899999999999998 999
Q ss_pred EeccCCeeeeecc-C-CCCcceeEEEEcCCccEEEecccccccc
Q 031924 107 VGILPNRIIQPIA-E-HSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 107 ~d~~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
||+++++.+..+. . |.. +|.+++|+|++++|++++.++.|.
T Consensus 223 wd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~ 265 (355)
T 3vu4_A 223 FKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLH 265 (355)
T ss_dssp EETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEE
T ss_pred EECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEE
Confidence 9999999988886 4 777 699999999999999999987764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-23 Score=145.07 Aligned_cols=140 Identities=13% Similarity=0.130 Sum_probs=113.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCee-------eeee----ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV-------QTRS----EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 69 (150)
++|||||++|++++.||+|++||+.+++. +..+ .+|.+.|.+++|+|+| +++++.|+++++||+...
T Consensus 135 vafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~ 212 (588)
T 2j04_A 135 FEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSAS 212 (588)
T ss_dssp EEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSS
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCC
Confidence 57999999999999999999999998752 4554 5677899999999999 888889999999998633
Q ss_pred cc--cccccc-cccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEE--cCCccEEEecccc
Q 031924 70 KD--CSDRFV-GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGI--ASVLCFINSGFLS 144 (150)
Q Consensus 70 ~~--~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~s~~~~ 144 (150)
.. ..+++. + |...|.++... ++.+++++ ++.|++||+.+++......+|.. .+..++| +|++..+++++.+
T Consensus 213 ~~~~~~~tL~~~-h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~-~V~~va~~~s~d~~~La~a~ed 288 (588)
T 2j04_A 213 SHQPVSRMIQNA-SRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLE-NFHIIPLNHEKESTILLMSNKT 288 (588)
T ss_dssp SSCCCEEEEECC-CSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCS-CCCEEEETTCSSCEEEEECSSC
T ss_pred ccccceeeeccc-ccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCc-eEEEEEeeeCCCCCEEEEEcCC
Confidence 21 123453 5 77888888744 68888887 69999999988877333336877 6999999 9999999999977
Q ss_pred cc
Q 031924 145 LN 146 (150)
Q Consensus 145 ~~ 146 (150)
+.
T Consensus 289 G~ 290 (588)
T 2j04_A 289 SY 290 (588)
T ss_dssp EE
T ss_pred CC
Confidence 75
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-23 Score=136.64 Aligned_cols=140 Identities=12% Similarity=0.103 Sum_probs=118.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC-Ce--eeeeeccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEEcccc-----cc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK-NT--VQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF-----KD 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~-~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~-----~~ 71 (150)
++|+|++ +++++.|+.|++||+++ ++ .......+...+.+++|+| +++++++++.||.+++|+++.. .+
T Consensus 156 ~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 156 MDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp EEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred EEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence 3577776 88899999999999988 54 2334456778999999999 9999999999999999998654 25
Q ss_pred ccccccccccc---------ceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCC-CCcceeEEEEcCCccEEEe
Q 031924 72 CSDRFVGLSPN---------SVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEH-SEYPIESLGIASVLCFINS 140 (150)
Q Consensus 72 ~~~~~~~~~~~---------~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s 140 (150)
....+.. |.. .+.++. ++++++|++++.||.|++||+.+++.+..+..| .. +|.+++ |++++|++
T Consensus 234 ~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~~~--~~~~~l~s 309 (342)
T 1yfq_A 234 KRFAFRC-HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED-SVVKIA--CSDNILCL 309 (342)
T ss_dssp TCEEEEC-CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS-EEEEEE--ECSSEEEE
T ss_pred cceeeec-ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC-CceEec--CCCCeEEE
Confidence 5566666 654 888887 889999999999999999999999999999887 77 699999 99999999
Q ss_pred cccccc
Q 031924 141 GFLSLN 146 (150)
Q Consensus 141 ~~~~~~ 146 (150)
|+.++.
T Consensus 310 ~s~Dg~ 315 (342)
T 1yfq_A 310 ATSDDT 315 (342)
T ss_dssp EEECTH
T ss_pred EecCCc
Confidence 998876
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=142.45 Aligned_cols=143 Identities=10% Similarity=-0.023 Sum_probs=112.2
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeee-----eeeccCCCcEEEEEEEe--------CCCEEEeecCCCeEEEEEcccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ-----TRSEFSEEELTSVVLMK--------NGRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~i~~~~~~ 69 (150)
++++++++++++.|++|++||.+.++.. ..+.+|.+.|++++|+| ++++|++++.|++|++||++..
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 4557788999999999999999987543 34678999999999998 7899999999999999999644
Q ss_pred cccccccccccccceeEee-ecCC-CEEEEecCCCcEEEEeccCCeeeeec-------------------------cCCC
Q 031924 70 KDCSDRFVGLSPNSVDALL-KLDE-DRVITGSENGLISLVGILPNRIIQPI-------------------------AEHS 122 (150)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~~-~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~-------------------------~~~~ 122 (150)
.....+.. |...+.++. +|++ ++|++++.|+.|++||+++++..... ..|.
T Consensus 177 -~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 254 (393)
T 4gq1_A 177 -GPILAGYP-LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA 254 (393)
T ss_dssp -EEEEEEEE-CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred -ceeeeecC-CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence 44444556 778888887 7766 58999999999999999876533221 2344
Q ss_pred CcceeEEEEc-CCccEEEecccccccc
Q 031924 123 EYPIESLGIA-SVLCFINSGFLSLNVN 148 (150)
Q Consensus 123 ~~~i~~~~~~-~~~~~l~s~~~~~~v~ 148 (150)
. .+.++.|+ |+++.+++++.++.+.
T Consensus 255 ~-~v~~v~~~~~dg~~l~s~s~d~~i~ 280 (393)
T 4gq1_A 255 S-SLANVRWIGSDGSGILAMCKSGAWL 280 (393)
T ss_dssp S-SCSEEEEETTTTCEEEEECTTSEEE
T ss_pred c-cceeeeeecCCCCEEEEEeCCCCEE
Confidence 4 48888886 7999999999887653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-23 Score=141.52 Aligned_cols=141 Identities=13% Similarity=0.069 Sum_probs=121.9
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
+++++++++++++.|+.|++||+.+++.+..+.+|...+.+++|+|+++++++++.||.|++||++ .++....+.+ |.
T Consensus 275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~-h~ 352 (464)
T 3v7d_B 275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE-NGELMYTLQG-HT 352 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TTEEEEEECC-CS
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEEeC-CC
Confidence 356788999999999999999999999999999999999999999999999999999999999986 4577888888 99
Q ss_pred cceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 82 NSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
..+.++.. +++.+++++.||.|++||+.+.+..... .+.. .+..++|+|+++++++|+ ++.|.
T Consensus 353 ~~v~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~-dg~i~ 415 (464)
T 3v7d_B 353 ALVGLLRL-SDKFLVSAAADGSIRGWDANDYSRKFSY-HHTN-LSAITTFYVSDNILVSGS-ENQFN 415 (464)
T ss_dssp SCEEEEEE-CSSEEEEEETTSEEEEEETTTCCEEEEE-ECTT-CCCEEEEEECSSEEEEEE-TTEEE
T ss_pred CcEEEEEE-cCCEEEEEeCCCcEEEEECCCCceeeee-cCCC-CccEEEEEeCCCEEEEec-CCeEE
Confidence 99988863 3689999999999999999887655554 3444 588899999999999988 66553
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=139.88 Aligned_cols=144 Identities=12% Similarity=0.143 Sum_probs=119.1
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCeeeeee-------------ccCCCcEEEEEEEe-CCCEEEeecCCCeEEEEE
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRS-------------EFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYS 65 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------------~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~~ 65 (150)
++|+| ++++|++++.||.|++||+.+++..... ..|...|.+++|+| ++..|++++.||.|++||
T Consensus 49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 128 (408)
T 4a11_B 49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD 128 (408)
T ss_dssp EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEee
Confidence 47999 9999999999999999999987644332 24888999999999 788999999999999999
Q ss_pred cccccccccccccccccceeEee-ec---CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc-EEEe
Q 031924 66 WGYFKDCSDRFVGLSPNSVDALL-KL---DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC-FINS 140 (150)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~v~~~~-~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 140 (150)
+.. ++....+. +...+.++. .+ ++.++++++.|+.|++||+++++.+..+..|.. +|.+++|+|++. ++++
T Consensus 129 ~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ll~~ 204 (408)
T 4a11_B 129 TNT-LQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ-EILAVSWSPRYDYILAT 204 (408)
T ss_dssp TTT-TEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS-CEEEEEECSSCTTEEEE
T ss_pred CCC-Cccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC-cEEEEEECCCCCcEEEE
Confidence 863 35544443 455566655 44 556999999999999999999988888888888 699999999998 5889
Q ss_pred cccccccc
Q 031924 141 GFLSLNVN 148 (150)
Q Consensus 141 ~~~~~~v~ 148 (150)
|+.++.|.
T Consensus 205 ~~~dg~i~ 212 (408)
T 4a11_B 205 ASADSRVK 212 (408)
T ss_dssp EETTSCEE
T ss_pred EcCCCcEE
Confidence 99888764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=137.89 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=116.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe---eeeeeccCCCcEEEEEEEeCCC-EEEeecCCCeEEEEEc-ccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSW-GYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~~~-~~~~~~~~~ 75 (150)
++|+|++++|++++.|+.|++||+..++ .......|...+.+++|+|+++ +|++++.||.|++||+ ... +. ..
T Consensus 17 ~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~-~~ 94 (342)
T 1yfq_A 17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP-SF-QA 94 (342)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS-SE-EE
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC-ce-Ee
Confidence 4799999999999999999999998876 3445568889999999999999 9999999999999998 633 22 22
Q ss_pred cccc-cccceeEee-ecCCCEEEEecCCCcEEEEeccC---------CeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 76 FVGL-SPNSVDALL-KLDEDRVITGSENGLISLVGILP---------NRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 76 ~~~~-~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
+.+. |...|.++. ++ ++.+++++.|+.|++||+++ ++.+..+. |.. .+.+++|+|++ +++++.+
T Consensus 95 ~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~~~~--l~~~~~d 169 (342)
T 1yfq_A 95 LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKN-KIFTMDTNSSR--LIVGMNN 169 (342)
T ss_dssp CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCC-CEEEEEECSSE--EEEEEST
T ss_pred ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCC-ceEEEEecCCc--EEEEeCC
Confidence 2210 677888887 77 99999999999999999987 77677775 666 69999999998 7777777
Q ss_pred cccc
Q 031924 145 LNVN 148 (150)
Q Consensus 145 ~~v~ 148 (150)
+.|.
T Consensus 170 ~~i~ 173 (342)
T 1yfq_A 170 SQVQ 173 (342)
T ss_dssp TEEE
T ss_pred CeEE
Confidence 6553
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=155.53 Aligned_cols=145 Identities=16% Similarity=0.215 Sum_probs=123.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe--CCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++|+|+++++++++.|+.|++||+.+++.+..+..|...+.+++|+| ++..+++++.|+.|++||++ .++....+.+
T Consensus 663 ~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~-~~~~~~~~~~ 741 (1249)
T 3sfz_A 663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-QKECRNTMFG 741 (1249)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT-SSSEEEEECC
T ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC-CcchhheecC
Confidence 47999999999999999999999999999999999999999999999 56689999999999999996 4577777888
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeecc--------------------------------------
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIA-------------------------------------- 119 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-------------------------------------- 119 (150)
|...|.++. +++++.+++++.||.|++||+.+++....+.
T Consensus 742 -h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~ 820 (1249)
T 3sfz_A 742 -HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK 820 (1249)
T ss_dssp -CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTE
T ss_pred -CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCc
Confidence 999999988 8899999999999999999997765433321
Q ss_pred -----------------CCCCcceeEEEEcCCccEEEecccccccc
Q 031924 120 -----------------EHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 120 -----------------~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.|.. ++.+++|+|+++++++++.++.|.
T Consensus 821 v~~~d~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~dg~v~ 865 (1249)
T 3sfz_A 821 VLLFDIHTSGLLAEIHTGHHS-TIQYCDFSPYDHLAVIALSQYCVE 865 (1249)
T ss_dssp EEEEETTTCCEEEEEECSSSS-CCCEEEECSSTTEEEEECSSSCEE
T ss_pred EEEEEecCCCceeEEcCCCCC-ceEEEEEcCCCCEEEEEeCCCeEE
Confidence 3334 477888888888888888776653
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-23 Score=136.92 Aligned_cols=140 Identities=13% Similarity=0.071 Sum_probs=109.0
Q ss_pred ceEEE--EcCCCeEEEEEcCCCe----------------eeeeeccCCCcEEEEEEEeCCCEEEeecCCCe-EEEEEccc
Q 031924 8 MKLLG--TSGDGTLSVCNLRKNT----------------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGY 68 (150)
Q Consensus 8 ~~l~~--~~~d~~i~i~d~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~~~~~ 68 (150)
++++. ++.+|.|++||+.+++ .+..+.+|.+.|.+++|+|+|++|++++.|++ |++||++
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~- 226 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE- 226 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT-
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC-
Confidence 45555 5789999999999865 16678899999999999999999999999998 9999996
Q ss_pred ccccccccc-cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCee--eeec--------------------cCCCCc
Q 031924 69 FKDCSDRFV-GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRI--IQPI--------------------AEHSEY 124 (150)
Q Consensus 69 ~~~~~~~~~-~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~--------------------~~~~~~ 124 (150)
.++.+..+. +.|...|.++. +|++++|++++.|+.|++||+..... ...+ ......
T Consensus 227 ~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
T 3vu4_A 227 DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHV 306 (355)
T ss_dssp TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTC
T ss_pred CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCC
Confidence 456667776 22788899988 89999999999999999999965421 1111 111111
Q ss_pred ceeEEEEcCCccEEEecccccccc
Q 031924 125 PIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 125 ~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+...++|+++++++++++.++.+.
T Consensus 307 ~~~~~a~~~d~~~l~~~~~dg~~~ 330 (355)
T 3vu4_A 307 RGCKIAWISESSLVVVWPHTRMIE 330 (355)
T ss_dssp CCCEEEESSSSEEEEEETTTTEEE
T ss_pred CceEEEEeCCCCEEEEEeCCCeEE
Confidence 246789999999999999887654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=138.59 Aligned_cols=139 Identities=16% Similarity=0.203 Sum_probs=121.4
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
+++++++++++++.||.|++||+.+++.+..+.+|...|.+++|+ ++.+++++.||+|++||+. .++....+.+ |.
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~-h~ 199 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE-TGECIHTLYG-HT 199 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT-TTEEEEEECC-CS
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC-cCcEEEEECC-CC
Confidence 456788999999999999999999999999999999999999997 6799999999999999986 4577777888 88
Q ss_pred cceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 82 NSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
..+.++.. +++.+++++.||.|++||+.+++.+..+..|.. ++.+++| ++.++++|+.++.|.
T Consensus 200 ~~v~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~ 262 (445)
T 2ovr_B 200 STVRCMHL-HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSGAYDFMVK 262 (445)
T ss_dssp SCEEEEEE-ETTEEEEEETTSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEEETTSCEE
T ss_pred CcEEEEEe-cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEEcCCCEEE
Confidence 88888764 467899999999999999999988888888877 6999988 788899999887764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=138.63 Aligned_cols=137 Identities=20% Similarity=0.254 Sum_probs=120.7
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccc
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 83 (150)
..+++++++++.|+.|++||+++++.+..+..|...+.++.+ +++.+++|+.||.|++||++ .++....+.+ |...
T Consensus 263 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~-h~~~ 338 (435)
T 1p22_A 263 DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE-CGACLRVLEG-HEEL 338 (435)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETT-TCCEEEEECC-CSSC
T ss_pred EeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC-CCCEEEEEeC-CcCc
Confidence 347889999999999999999999999999999999999988 47899999999999999996 4577788888 9999
Q ss_pred eeEeeecCCCEEEEecCCCcEEEEeccCCe---------eeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 84 VDALLKLDEDRVITGSENGLISLVGILPNR---------IIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 84 v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+.++.. +++.+++|+.||.|++||+.+++ .+..+..|.. +|.+++| ++.+|++|+.++.|.
T Consensus 339 v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~--~~~~l~s~s~Dg~i~ 408 (435)
T 1p22_A 339 VRCIRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG-RVFRLQF--DEFQIVSSSHDDTIL 408 (435)
T ss_dssp EEEEEC-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS-CCCCEEE--CSSCEEECCSSSEEE
T ss_pred EEEEEe-cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC-CeEEEEe--CCCEEEEEeCCCEEE
Confidence 988865 78999999999999999997655 6778888888 6999999 788999999988774
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-22 Score=136.30 Aligned_cols=139 Identities=13% Similarity=0.140 Sum_probs=120.5
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
++.++++++++++.||.|++||+.+++....+.+|...|.+++| +++.+++|+.||.|++||+. .++....+.+ |.
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~-h~ 213 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN-TGEMLNTLIH-HC 213 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS-SCCEEEEECC-CC
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC-CCcEEEEEcC-CC
Confidence 45678999999999999999999999999999999999999998 78999999999999999986 4577778888 99
Q ss_pred cceeEeeecCCCEEEEecCCCcEEEEeccCCeee---eeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 82 NSVDALLKLDEDRVITGSENGLISLVGILPNRII---QPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
..+.++.. +++.+++++.||.|++||+.+++.. ..+..|.. +|.+++| +++++++|+.++.|.
T Consensus 214 ~~v~~l~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~s~~~dg~i~ 279 (435)
T 1p22_A 214 EAVLHLRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVVDF--DDKYIVSASGDRTIK 279 (435)
T ss_dssp SCEEEEEC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS-CEEEEEE--ETTEEEEEETTSEEE
T ss_pred CcEEEEEE-cCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC-cEEEEEe--CCCEEEEEeCCCeEE
Confidence 99988874 3569999999999999999876644 56667877 6999998 788999999888764
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.9e-23 Score=140.05 Aligned_cols=138 Identities=9% Similarity=-0.007 Sum_probs=109.5
Q ss_pred CeeecCcceEE----EEcCCCeEEEEEcCCC--------ee---eeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEE
Q 031924 1 MTFAADAMKLL----GTSGDGTLSVCNLRKN--------TV---QTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLY 64 (150)
Q Consensus 1 i~~~~~~~~l~----~~~~d~~i~i~d~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~ 64 (150)
++|+|++++|+ +++.|+.|++||++++ +. ...+.+|...|.+++|+|+ +..|++++.||+|++|
T Consensus 98 l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iw 177 (434)
T 2oit_A 98 LALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVL 177 (434)
T ss_dssp EEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred EEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEE
Confidence 47999999999 7888999999998654 21 3445668889999999998 8899999999999999
Q ss_pred EcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCC------cceeEEEEcCCccE
Q 031924 65 SWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE------YPIESLGIASVLCF 137 (150)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~ 137 (150)
|++.. .......+ |...+.++. +++|++|++|+.||.|++||++ ++....+..|.. ..+.+++|++++.+
T Consensus 178 D~~~~-~~~~~~~~-~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~ 254 (434)
T 2oit_A 178 QVTET-VKVCATLP-STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVF 254 (434)
T ss_dssp EESSS-EEEEEEEC-GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred EcCCC-cceeeccC-CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceE
Confidence 99744 44444456 788899988 8899999999999999999997 444444432211 15999999999988
Q ss_pred EEec
Q 031924 138 INSG 141 (150)
Q Consensus 138 l~s~ 141 (150)
+++.
T Consensus 255 l~~~ 258 (434)
T 2oit_A 255 AIVY 258 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=135.08 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=94.4
Q ss_pred CeeecCcceEEEEcCCC----eEEEEEcCCCee----eeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccc
Q 031924 1 MTFAADAMKLLGTSGDG----TLSVCNLRKNTV----QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~----~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 72 (150)
++|+|+++.+++++.|+ .++.|++..... ...+..|...|++++|+|+|++|++|+.|++|++||++. ++.
T Consensus 225 v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-~~~ 303 (365)
T 4h5i_A 225 INFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD-LSM 303 (365)
T ss_dssp EEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEE
T ss_pred EEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC-CcE
Confidence 47999999999998776 688899877643 345678889999999999999999999999999999964 466
Q ss_pred cccc-ccccccceeEee-ecCCCEEEEecCCCcEEEEeccC
Q 031924 73 SDRF-VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILP 111 (150)
Q Consensus 73 ~~~~-~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~ 111 (150)
+.++ .+ |...|+++. +|++++|++++.|++|++||+..
T Consensus 304 ~~~~~~g-H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 304 SKIFKQA-HSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEETTS-SSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEEecCc-ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 6664 67 999999998 99999999999999999999854
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-21 Score=131.62 Aligned_cols=135 Identities=19% Similarity=0.242 Sum_probs=119.1
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccccee
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 85 (150)
+++.+++++.|++|++||+++++.+..+..|...+.++.|+ ++.+++++.||.|++||++ .++....+.+ |...+.
T Consensus 168 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~-~~~~v~ 243 (445)
T 2ovr_B 168 RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIE-TGQCLHVLMG-HVAAVR 243 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESS-SCCEEEEEEC-CSSCEE
T ss_pred cCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECC-CCcEEEEEcC-CcccEE
Confidence 36789999999999999999999999999999999999985 6789999999999999986 4567777778 888888
Q ss_pred EeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
++.. +++.+++++.||.|++||+++++.+..+..|.. ++.+++| ++.++++|+.++.|.
T Consensus 244 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~d~~i~ 302 (445)
T 2ovr_B 244 CVQY-DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQF--DGIHVVSGSLDTSIR 302 (445)
T ss_dssp EEEE-CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSCEE
T ss_pred EEEE-CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCC-ceEEEEE--CCCEEEEEeCCCeEE
Confidence 8765 788999999999999999999999999988887 6999998 888999999888764
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=136.98 Aligned_cols=145 Identities=8% Similarity=0.031 Sum_probs=112.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCC-----------eee----eeeccCCCcEEEEEEEeCCCEEE----eecCCCeE
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-----------TVQ----TRSEFSEEELTSVVLMKNGRKVV----CGSQSGTV 61 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~-----------~~~----~~~~~~~~~v~~~~~~~~~~~l~----~~~~d~~i 61 (150)
+++++++.++++++.++ +++|+...- ... .....+...+.+++|+|++++|+ +++.|+.|
T Consensus 42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v 120 (434)
T 2oit_A 42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII 120 (434)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEE
T ss_pred EEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceE
Confidence 46888899999998887 899875321 000 01112456799999999999999 78899999
Q ss_pred EEEEcccc-----c--c---cccccccccccceeEee-ecC-CCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEE
Q 031924 62 LLYSWGYF-----K--D---CSDRFVGLSPNSVDALL-KLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129 (150)
Q Consensus 62 ~i~~~~~~-----~--~---~~~~~~~~~~~~v~~~~-~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~ 129 (150)
++||++.. . + ....+.+ |...|.++. +|+ +++|++++.||.|++||++++........|.. .|.++
T Consensus 121 ~iwd~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~-~v~~v 198 (434)
T 2oit_A 121 AFFDVRTFSNEAKQQKRPFAYHKLLKD-AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV-AVTSV 198 (434)
T ss_dssp EEEEHHHHHCTTCSSCCCSEEEECCCS-GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG-CEEEE
T ss_pred EEEEccccccCCcCCcceeeeeeccCC-CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC-ceeEE
Confidence 99998632 0 1 1344556 888999988 776 78999999999999999998876655556666 69999
Q ss_pred EEcCCccEEEecccccccc
Q 031924 130 GIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 130 ~~~~~~~~l~s~~~~~~v~ 148 (150)
+|+|+|++|++|+.++.|.
T Consensus 199 ~wspdg~~lasgs~dg~v~ 217 (434)
T 2oit_A 199 CWSPKGKQLAVGKQNGTVV 217 (434)
T ss_dssp EECTTSSCEEEEETTSCEE
T ss_pred EEcCCCCEEEEEcCCCcEE
Confidence 9999999999999988764
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-20 Score=127.52 Aligned_cols=139 Identities=10% Similarity=-0.008 Sum_probs=116.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeee-----eeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-----RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
++|+|+++++++++.++.|++||+.+++... .+..|...+.+++|+++++.+++++.|+.+++||++ .++....
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~-~~~~~~~ 206 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLK-TLAYKAT 206 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT-TCCEEEE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECC-CceEEEE
Confidence 5789977788888889999999999988765 345778899999999999999999999999999986 3466666
Q ss_pred cccccccceeEee-ecCCCEE-EEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRV-ITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.. |...+.++. +++++.+ ++++.|+.|++||+++++.+..+..+ . .+..++|+|+++++++++.
T Consensus 207 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~g~~l~~~~~ 273 (433)
T 3bws_A 207 VDL-TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-G-LPRGLLLSKDGKELYIAQF 273 (433)
T ss_dssp EEC-SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-S-EEEEEEECTTSSEEEEEEE
T ss_pred EcC-CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-C-CceEEEEcCCCCEEEEEEC
Confidence 766 777888887 8888877 45558999999999999888887554 4 4899999999999888774
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=8.5e-20 Score=122.60 Aligned_cols=141 Identities=13% Similarity=0.196 Sum_probs=111.6
Q ss_pred CeeecCcceE-EEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++++ +++.++.|++||+. .++....+..
T Consensus 37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~-~~~~~~~~~~ 114 (391)
T 1l0q_A 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTT-SNTVAGTVKT 114 (391)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEEC
T ss_pred EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECC-CCeEEEEEeC
Confidence 4789999877 566789999999999998887776554 899999999999875 55577999999986 3455555554
Q ss_pred ccccceeEee-ecCCCEE-EEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEE-Eeccccccc
Q 031924 79 LSPNSVDALL-KLDEDRV-ITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFI-NSGFLSLNV 147 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~~~~v 147 (150)
+ ..+.++. +++++.+ ++++.++.|++||+.+++.+..+..+ . .+..++|+|+++++ ++++.++.|
T Consensus 115 -~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~~~dg~~l~~~~~~~~~v 182 (391)
T 1l0q_A 115 -G-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R-SPKGIAVTPDGTKVYVANFDSMSI 182 (391)
T ss_dssp -S-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S-SEEEEEECTTSSEEEEEETTTTEE
T ss_pred -C-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C-CcceEEECCCCCEEEEEeCCCCEE
Confidence 3 4566666 8888877 78888999999999999888887655 3 37999999999877 566666554
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-19 Score=119.58 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=113.0
Q ss_pred CeeecCcceE-EEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++|+|+++.+ ++++.++.|++||+.+++....+..+ ..+.+++|+|+++.+ ++++.++.|++||++. ++....+.
T Consensus 121 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~- 197 (391)
T 1l0q_A 121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK- 197 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE-
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CeEEEEEe-
Confidence 4789999977 67788999999999999887777654 456999999999887 6778899999999863 35555554
Q ss_pred ccccceeEee-ecCCCEEEEec---CCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEE-Eecccccccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGS---ENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFI-NSGFLSLNVN 148 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~~~~v~ 148 (150)
+...+.++. +++++.+++++ .++.|++||+.+++.+..+..+.. +.+++|+|+++++ ++++.++.|.
T Consensus 198 -~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~s~~~d~~v~ 269 (391)
T 1l0q_A 198 -VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD--PAGIAVTPDGKKVYVALSFXNTVS 269 (391)
T ss_dssp -CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS--EEEEEECTTSSEEEEEETTTTEEE
T ss_pred -cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC--ccEEEEccCCCEEEEEcCCCCEEE
Confidence 345666666 88999888887 689999999999988888866543 7899999999877 6666666553
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-19 Score=117.23 Aligned_cols=129 Identities=6% Similarity=-0.082 Sum_probs=94.1
Q ss_pred CCCeEEEEEc-CCCeeeeeeccCCCcEEEEEEEe---CCCEEEeecCCCeEEEEEccccccccccccccccc---ceeEe
Q 031924 15 GDGTLSVCNL-RKNTVQTRSEFSEEELTSVVLMK---NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN---SVDAL 87 (150)
Q Consensus 15 ~d~~i~i~d~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~---~v~~~ 87 (150)
.|+.|++|++ ++++.+..+..|...+..++|++ ++..|++++.|++|++||++ .+++++++.+ |.. .+.++
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~-TGk~l~tL~g-~~~~v~~v~~v 232 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK-TGQLLKKMHI-DDSYQASVCHK 232 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT-TCCEEEEEEC-CC---CCCEEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC-CCcEEEEEcC-CCcceeeeEEE
Confidence 3889999999 44777777788888888999998 77999999999999999996 5677888875 443 34444
Q ss_pred e-ecCCCEE------------EEecCCCcEEEEeccCCeeeeec-----cCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 88 L-KLDEDRV------------ITGSENGLISLVGILPNRIIQPI-----AEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 88 ~-~~~~~~l------------~~~~~dg~i~~~d~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
. +|++.++ ++|+.|++|++||..+++.+..+ ..|... +. ..+.++.++|+|+.++.|.
T Consensus 233 afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~-~l--sg~~sg~~lASgS~DgTIk 308 (356)
T 2w18_A 233 AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR-FL--EGDVKDHCAAAILTSGTIA 308 (356)
T ss_dssp EEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC-EE--EEEEETTEEEEEETTSCEE
T ss_pred EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce-eE--ccccCCCEEEEEcCCCcEE
Confidence 4 7788765 56788999999999999876654 244442 33 3333477889988887664
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.8e-19 Score=119.19 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=107.0
Q ss_pred CeeecCcceEEEEcCCC---eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCC--eEEEEEccccccccc
Q 031924 1 MTFAADAMKLLGTSGDG---TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSG--TVLLYSWGYFKDCSD 74 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~i~~~~~~~~~~~ 74 (150)
++|+|+++.|++++.++ .|++||+++++.. .+..+...+.+++|+|+|++|+ +++.++ .|++||+.. ++ ..
T Consensus 184 ~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-~~-~~ 260 (415)
T 2hqs_A 184 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQ-IR 260 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CC-EE
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC-CC-EE
Confidence 47999999999998775 9999999998765 4566778899999999999887 666655 488899853 23 34
Q ss_pred ccccccccceeEee-ecCCCEEEEecC-CC--cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
.+.. +...+..+. +|+|+.|++++. ++ .|++||+.+++. ..+..+.. .+..++|+|+|++|++++..
T Consensus 261 ~l~~-~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~-~~~~~~~spdG~~l~~~~~~ 331 (415)
T 2hqs_A 261 QVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGS-QNQDADVSSDGKFMVMVSSN 331 (415)
T ss_dssp ECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSS-EEEEEEECTTSSEEEEEEEC
T ss_pred eCcC-CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCC-cccCeEECCCCCEEEEEECc
Confidence 5666 777787777 899998888775 45 677789877764 34445555 58899999999999987753
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-19 Score=120.58 Aligned_cols=142 Identities=8% Similarity=0.032 Sum_probs=114.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEcccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
++|+|+++++++++.|+.|++||+++++....+..+...+.+++|+|+++.++ +++.++.|++||++ .++....+..
T Consensus 175 ~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~-~~~~~~~~~~- 252 (433)
T 3bws_A 175 ISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK-TKLEIRKTDK- 252 (433)
T ss_dssp EEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT-TTEEEEECCC-
T ss_pred EEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC-CCcEEEEecC-
Confidence 36788999999999999999999999988888888888999999999999885 55589999999986 3455566654
Q ss_pred cccceeEee-ecCCCEEEEec--------CCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc-EEEeccccccc
Q 031924 80 SPNSVDALL-KLDEDRVITGS--------ENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC-FINSGFLSLNV 147 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~--------~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~~~~v 147 (150)
+ ..+..+. +++++.+++++ .|+.|++||+.+++.+..+ .+.. .+..++|+|+++ ++++++.++.|
T Consensus 253 ~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~-~~~~~~~~~~g~~l~~~~~~~~~v 327 (433)
T 3bws_A 253 I-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPG-NKRHIVSGNTENKIYVSDMCCSKI 327 (433)
T ss_dssp C-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEE-CEEEEEECSSTTEEEEEETTTTEE
T ss_pred C-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCC-CcceEEECCCCCEEEEEecCCCEE
Confidence 3 3466666 88998888887 5889999999988877766 4445 588999999996 45666666654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.4e-18 Score=114.37 Aligned_cols=138 Identities=14% Similarity=0.081 Sum_probs=103.9
Q ss_pred CeeecCcceEE-EEcCCC--eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC-CC--eEEEEEccccccccc
Q 031924 1 MTFAADAMKLL-GTSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSD 74 (150)
Q Consensus 1 i~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~ 74 (150)
++|+||++.|+ +++.++ .|++||+.+++. ..+..+...+.+++|+|+|++|+.++. ++ .|.+||+.. ++ ..
T Consensus 228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~-~~ 304 (415)
T 2hqs_A 228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA-PQ 304 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-CE
T ss_pred EEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-EE
Confidence 47999999888 565554 499999998865 456677788999999999999887775 45 666777752 22 34
Q ss_pred ccccccccceeEee-ecCCCEEEEecCC---CcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
.+.. +...+..+. +|+|++|++++.+ ..|++||+.+++.. .+..+. .+..++|+|+|++|++++.+.
T Consensus 305 ~l~~-~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 305 RITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF--LDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp ECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS--SCEEEEECTTSSEEEEEEEET
T ss_pred EEec-CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC--CcCCeEEcCCCCEEEEEEcCC
Confidence 4444 556666666 8999999888764 58999999887764 444443 589999999999998887654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-18 Score=122.49 Aligned_cols=141 Identities=11% Similarity=0.034 Sum_probs=108.3
Q ss_pred CeeecCcceEEEEcC-CC-----eEEEEEcCCCeeeeeeccCC------------------------CcEEEEEEEeCCC
Q 031924 1 MTFAADAMKLLGTSG-DG-----TLSVCNLRKNTVQTRSEFSE------------------------EELTSVVLMKNGR 50 (150)
Q Consensus 1 i~~~~~~~~l~~~~~-d~-----~i~i~d~~~~~~~~~~~~~~------------------------~~v~~~~~~~~~~ 50 (150)
++|+|||++|++++. |+ .|++||+.+++.......+. ..+.+++|+|||+
T Consensus 42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~ 121 (741)
T 2ecf_A 42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ 121 (741)
T ss_dssp EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSS
T ss_pred ceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC
Confidence 479999999999987 88 89999999987665554332 2378899999999
Q ss_pred EEEeecCCCeEEEEEcccccc--cccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCc---
Q 031924 51 KVVCGSQSGTVLLYSWGYFKD--CSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY--- 124 (150)
Q Consensus 51 ~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--- 124 (150)
+|++++. +.|++||+.. +. ....+.. +...+..+. +|+|+.|+.++ ++.|++||+.+++..+....+...
T Consensus 122 ~l~~~~~-~~i~~~d~~~-~~~~~~~~l~~-~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~ 197 (741)
T 2ecf_A 122 RLLFPLG-GELYLYDLKQ-EGKAAVRQLTH-GEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGN 197 (741)
T ss_dssp EEEEEET-TEEEEEESSS-CSTTSCCBCCC-SSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEE
T ss_pred EEEEEeC-CcEEEEECCC-CCcceEEEccc-CCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceec
Confidence 9998876 8999999863 21 4455666 667777776 99999999887 569999999888766554333221
Q ss_pred ------------ceeEEEEcCCccEEEeccccc
Q 031924 125 ------------PIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 125 ------------~i~~~~~~~~~~~l~s~~~~~ 145 (150)
.+..++|+|||++|++++.+.
T Consensus 198 g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~ 230 (741)
T 2ecf_A 198 GIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE 230 (741)
T ss_dssp SCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred cccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence 147799999999999887643
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-18 Score=110.15 Aligned_cols=143 Identities=12% Similarity=0.039 Sum_probs=107.7
Q ss_pred CeeecCcceEE-EEcCCCeEEEEEcCC-CeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLL-GTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~-~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~ 77 (150)
++|+|+++.|+ ++..++.+++|++.. +.....+..+...+.+++|+|+++.++.++ .++.+++|++...+.....+.
T Consensus 134 ~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 134 HGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT 213 (297)
T ss_dssp EEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC
T ss_pred eEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe
Confidence 36899999887 677889999998642 223445566778899999999999887665 588999998863445555666
Q ss_pred cccccceeEee-ecCCCEEEEecCC-----------CcEEEEeccCCee--eeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSEN-----------GLISLVGILPNRI--IQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~d-----------g~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
. +...+..+. ++++++|++++.+ +.|++||+.+++. +..+..|.. .+..++|+|++++|++++.
T Consensus 214 ~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 214 D-SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-TMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp C-CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT-TSCSCCBCTTSSEEEEEEE
T ss_pred c-CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc-ccccceECCCCCEEEEEEe
Confidence 6 666677666 8899998888765 5699999987764 333335656 5889999999999988876
Q ss_pred cc
Q 031924 144 SL 145 (150)
Q Consensus 144 ~~ 145 (150)
+-
T Consensus 292 ~~ 293 (297)
T 2ojh_A 292 FP 293 (297)
T ss_dssp CC
T ss_pred cc
Confidence 53
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=124.25 Aligned_cols=140 Identities=12% Similarity=-0.015 Sum_probs=105.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCC---cEEEEEEEeCCCEEEeecCC---------CeEEEEEccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE---ELTSVVLMKNGRKVVCGSQS---------GTVLLYSWGY 68 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~~i~i~~~~~ 68 (150)
++|+||++++++ +.|++|++||+.+++....+..+.. .+.+++|+|||++|++++.+ +.+.+||+..
T Consensus 22 ~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 100 (723)
T 1xfd_A 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (723)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred cEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCC
Confidence 579999997766 6899999999999887766666554 48999999999999988764 7888999863
Q ss_pred cccc--ccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCc-----------------ceeE
Q 031924 69 FKDC--SDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-----------------PIES 128 (150)
Q Consensus 69 ~~~~--~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-----------------~i~~ 128 (150)
++. +..... +...+..+. +|+|+.|+.++. +.|++||+.+++..+....+... .+..
T Consensus 101 -~~~~~l~~~~~-~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 101 -GDPQSLDPPEV-SNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp -CCCEECCCTTC-CSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred -CceEeccCCcc-ccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcce
Confidence 332 222223 334466665 999999998875 79999999887766554433221 1278
Q ss_pred EEEcCCccEEEecccc
Q 031924 129 LGIASVLCFINSGFLS 144 (150)
Q Consensus 129 ~~~~~~~~~l~s~~~~ 144 (150)
++|+|||+.|++++.+
T Consensus 178 ~~~SpDg~~la~~~~~ 193 (723)
T 1xfd_A 178 HWWSPDGTRLAYAAIN 193 (723)
T ss_dssp EEECTTSSEEEEEEEE
T ss_pred EEECCCCCEEEEEEEC
Confidence 9999999999988754
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-17 Score=104.52 Aligned_cols=140 Identities=10% Similarity=-0.024 Sum_probs=102.2
Q ss_pred CeeecCcceEEEEc--CCCeEE--EEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEcccccccccc
Q 031924 1 MTFAADAMKLLGTS--GDGTLS--VCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~--~d~~i~--i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
++|+|++++|++++ .++... .++..+++ ...+..+ ..+..++|+|+++.++ ++..++.+++|+++........
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~ 167 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR 167 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence 57999999999988 334444 45555554 3333333 3488999999999887 7778999999997533344445
Q ss_pred cccccccceeEee-ecCCCEEEEec-CCCcEEEEecc-CCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGS-ENGLISLVGIL-PNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~-~dg~i~~~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
+.. +...+..+. +++++.++.++ .++.+++|++. .+.....+..+.. .+..++|+|+|++|+.++.+
T Consensus 168 ~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 168 LTH-GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY-GDWFPHPSPSGDKVVFVSYD 237 (297)
T ss_dssp CCC-SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE-EEEEEEECTTSSEEEEEEEE
T ss_pred ccc-CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc-ccCCeEECCCCCEEEEEEcC
Confidence 555 667777777 88999777665 58899999886 4555666766666 59999999999999888765
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.6e-17 Score=112.54 Aligned_cols=142 Identities=8% Similarity=0.010 Sum_probs=110.4
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEc--ccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW--GYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~--~~~~~~~~~~~~~ 79 (150)
.|+|++..+++.+.|++|.+||..+++.+..+..... +..++|+|+|+++++++.|++|++||+ . ..+.+.++..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~-t~~~~~~i~~- 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAK-EPTKVAEIKI- 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSS-SCEEEEEEEC-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCC-CCcEEEEEec-
Confidence 4688898999999999999999999998888774333 889999999999999999999999998 4 3456666654
Q ss_pred cccceeEee-ec----CCCEEEEecC-CCcEEEEeccCCeeeeeccC----------CCCcceeEEEEcCCcc-EEEecc
Q 031924 80 SPNSVDALL-KL----DEDRVITGSE-NGLISLVGILPNRIIQPIAE----------HSEYPIESLGIASVLC-FINSGF 142 (150)
Q Consensus 80 ~~~~v~~~~-~~----~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~-~l~s~~ 142 (150)
.. ....+. ++ +|+++++++. ++.|.+||..+.++++.+.. |.+..+..+.++|++. ++++..
T Consensus 221 g~-~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 221 GI-EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp CS-EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CC-CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 33 345555 88 9999988884 89999999999888877753 2232488899999765 455554
Q ss_pred ccccc
Q 031924 143 LSLNV 147 (150)
Q Consensus 143 ~~~~v 147 (150)
.++.|
T Consensus 300 ~~g~i 304 (543)
T 1nir_A 300 ETGKV 304 (543)
T ss_dssp TTTEE
T ss_pred CCCeE
Confidence 44433
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-17 Score=107.10 Aligned_cols=108 Identities=10% Similarity=0.157 Sum_probs=87.9
Q ss_pred eeecCcce---EEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee--cCCCeEEEEEccccccccccc
Q 031924 2 TFAADAMK---LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG--SQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 2 ~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~i~~~~~~~~~~~~~ 76 (150)
.++|++.. +++++.++.|++||.+........ .+...+..+.|+|++..++++ +.|+.|++||++ .++.+.++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~-~~~~~~~l 280 (318)
T 4ggc_A 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP-TMAKVAEL 280 (318)
T ss_dssp EECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT-TCCEEEEE
T ss_pred EecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECC-CCcEEEEE
Confidence 35565443 335678899999999988665443 456789999999999888764 489999999986 45788889
Q ss_pred ccccccceeEee-ecCCCEEEEecCCCcEEEEeccCC
Q 031924 77 VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPN 112 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~ 112 (150)
.+ |...|.++. +|++++|++++.||+|++||+.+.
T Consensus 281 ~g-H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 281 KG-HTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CC-CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred cC-CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 99 999999998 899999999999999999998654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.2e-16 Score=101.51 Aligned_cols=139 Identities=13% Similarity=0.206 Sum_probs=105.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc----CCCcEEEEEEEeCCCEEEeecC-CCeEEEEEcccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF----SEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~ 75 (150)
++|+|+++.+++++.++.+.+||..+++....+.. +...+..++|+|+++++++++. ++.+.+||.. .++....
T Consensus 190 ~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~ 268 (353)
T 3vgz_A 190 LALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR-NGNILAK 268 (353)
T ss_dssp CEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT-TCCEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEE
Confidence 57899999999999999999999999987766543 4556889999999998776654 5999999985 3455555
Q ss_pred cccccccceeEeeecCCCEEE-EecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 76 FVGLSPNSVDALLKLDEDRVI-TGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
+.. .. ......+++++.++ +...++.|.+||..+++.+..+... . .+..++|+|+|++++.+...
T Consensus 269 ~~~-~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 269 VAA-PE-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-T-HPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEC-SS-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-S-EEEEEEECTTSCEEEEEEEC
T ss_pred EEc-CC-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-C-CCCeEEEcCCCCEEEEEEcc
Confidence 543 22 22233388888554 4557899999999999888877543 3 48899999999976665544
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6e-16 Score=102.41 Aligned_cols=140 Identities=9% Similarity=0.071 Sum_probs=105.6
Q ss_pred CeeecCcceEEE-EcCCCeEEEEEcCCCeeeeeeccCCC---------cEEEEEEEeCCCEEEeec--CCCeEEEEEccc
Q 031924 1 MTFAADAMKLLG-TSGDGTLSVCNLRKNTVQTRSEFSEE---------ELTSVVLMKNGRKVVCGS--QSGTVLLYSWGY 68 (150)
Q Consensus 1 i~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~d~~i~i~~~~~ 68 (150)
++|+|++++++. ...++.|.+||.++++....+..+.. .+.+++|+|+++++++++ .++.|.+||..
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~- 172 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG- 172 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT-
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC-
Confidence 468999986555 45689999999999987766654332 278999999999887765 47899999986
Q ss_pred ccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccC----CCCcceeEEEEcCCccEEEeccc
Q 031924 69 FKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAE----HSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
.++....+.. +...+..+. +++++.+++++.++.+.+||+.+++....+.. +.. .+..++|+|++++++.++.
T Consensus 173 ~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 173 NIKLKTAIQN-TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEH-FFINISLDTARQRAFITDS 250 (353)
T ss_dssp TTEEEEEECC-CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCC-CEEEEEEETTTTEEEEEES
T ss_pred CCceEEEecC-CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCc-ccceEEECCCCCEEEEEeC
Confidence 3455566653 344455555 88999999999999999999999887776643 333 3778999999997665543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.4e-16 Score=102.52 Aligned_cols=144 Identities=13% Similarity=0.099 Sum_probs=98.7
Q ss_pred CeeecCcceEEEEcCC-CeEEEEEcC--CCee--eeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEccc--cccc
Q 031924 1 MTFAADAMKLLGTSGD-GTLSVCNLR--KNTV--QTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGY--FKDC 72 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d-~~i~i~d~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~--~~~~ 72 (150)
++|+|+++++++++.+ +.|.+|++. +++. +..+..+ ..+..++|+|+++++++++ .++.+.+||+.. ..+.
T Consensus 43 ~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~ 121 (343)
T 1ri6_A 43 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 121 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred EEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccc
Confidence 4799999988888765 999999997 5543 3334333 3778999999999886665 488999999841 1233
Q ss_pred ccccccccccceeEee-ecCCCEEEEec-CCCcEEEEeccC-Ceeee----eccCCCCcceeEEEEcCCccEEEecc-cc
Q 031924 73 SDRFVGLSPNSVDALL-KLDEDRVITGS-ENGLISLVGILP-NRIIQ----PIAEHSEYPIESLGIASVLCFINSGF-LS 144 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~-~~~~~~l~~~~-~dg~i~~~d~~~-~~~~~----~~~~~~~~~i~~~~~~~~~~~l~s~~-~~ 144 (150)
...+.. + ..+..+. +++++.+++++ .++.|++||+.+ ++... .+..+.+..+..++|+|++++++.++ .+
T Consensus 122 ~~~~~~-~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~ 199 (343)
T 1ri6_A 122 VDVVEG-L-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN 199 (343)
T ss_dssp EEEECC-C-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cccccC-C-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC
Confidence 344433 3 3455555 88998777776 899999999987 54322 22222233588899999999665443 44
Q ss_pred ccc
Q 031924 145 LNV 147 (150)
Q Consensus 145 ~~v 147 (150)
+.|
T Consensus 200 ~~i 202 (343)
T 1ri6_A 200 SSV 202 (343)
T ss_dssp TEE
T ss_pred CEE
Confidence 433
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-16 Score=116.80 Aligned_cols=137 Identities=7% Similarity=-0.024 Sum_probs=110.5
Q ss_pred eeecCcceEEEEcCCCeEE-EEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLS-VCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+|+ |++.++.++.++.+. +||+..++... +..+...+..++|+|+|++|++++.++.+++||+. .++......+ |
T Consensus 344 ~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~-tg~~~~~~~~-~ 419 (1045)
T 1k32_A 344 GGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE-TGKPTVIERS-R 419 (1045)
T ss_dssp CSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEEEC-S
T ss_pred eEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECC-CCceEEeccC-C
Confidence 578 889999888888898 99998876543 34677889999999999999999999999999985 3455444546 7
Q ss_pred ccceeEee-ecCCCEEEEecCCC----------cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENG----------LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg----------~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
...+..+. +|+|++|++++.++ .|++||+.+++ ...+..|.. .+..++|+|||++|+.++..
T Consensus 420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~-~~~~~~~spdG~~l~~~s~~ 492 (1045)
T 1k32_A 420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENS-HDYAPAFDADSKNLYYLSYR 492 (1045)
T ss_dssp SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSS-BEEEEEECTTSCEEEEEESC
T ss_pred CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCc-ccCCceEcCCCCEEEEEecc
Confidence 77777766 89999998887654 89999998877 556666766 58889999999998877653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-15 Score=99.88 Aligned_cols=135 Identities=10% Similarity=0.009 Sum_probs=99.9
Q ss_pred eecCcc-eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC-CCeEEEEEccccccc-ccccccc
Q 031924 3 FAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC-SDRFVGL 79 (150)
Q Consensus 3 ~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~-~~~~~~~ 79 (150)
|.++++ .+++.+.++.|.+||.++++....+..+.... .++|+|+|+++++++. ++.|.+||+.. ++. ...+..
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~- 81 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL-EPPKVVAIQE- 81 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS-SSCEEEEEEE-
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC-CceeEEeccc-
Confidence 555555 46677789999999999998877766666666 9999999997766554 88999999863 344 555555
Q ss_pred cccceeEee-ecCCCEEEEecCCC---cEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
+..+..++. ++++++++++..++ .|++||+.+++.+..+..+ . ....++|+|+|+++++++
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~-~~~~~~~spdg~~l~~~~ 146 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-Y-DAVGIAISPNGNGLILID 146 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-T-TEEEEEECTTSSCEEEEE
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-C-CccceEECCCCCEEEEEe
Confidence 555555244 89999888665553 8999999999888777544 3 378999999998655443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.9e-16 Score=108.57 Aligned_cols=143 Identities=17% Similarity=0.149 Sum_probs=105.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEc--CCCeeeeeeccCCCcEEEEEEEe----CCCEEEeecC-CCeEEEEEcccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNL--RKNTVQTRSEFSEEELTSVVLMK----NGRKVVCGSQ-SGTVLLYSWGYFKDCS 73 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d~~i~i~~~~~~~~~~ 73 (150)
++|+|+++++++++.|++|++||+ .+++.+..+.. ...+..++|+| +|+++++++. +++|.+||..+ .+.+
T Consensus 184 v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~~~~ 261 (543)
T 1nir_A 184 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-LEPK 261 (543)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-CCEE
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-cccc
Confidence 368999999999999999999999 78887777763 45679999999 9999998884 89999999853 4555
Q ss_pred cccccc---------ccc-ceeEee-ecCC-CEEEEecCCCcEEEEeccCCeeee--eccCCCCcceeEEEEcCCccEEE
Q 031924 74 DRFVGL---------SPN-SVDALL-KLDE-DRVITGSENGLISLVGILPNRIIQ--PIAEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 74 ~~~~~~---------~~~-~v~~~~-~~~~-~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~ 139 (150)
+++... |+. .+..+. ++++ .++++...++.|.+||..+.+.+. .+ .+.. .+..+.|+|+|++++
T Consensus 262 ~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~-~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 262 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAP-FLHDGGWDSSHRYFM 339 (543)
T ss_dssp EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCS-SCCCEEECTTSCEEE
T ss_pred eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCc-CccCceECCCCCEEE
Confidence 555430 112 455665 6655 466677789999999998765443 34 2334 378899999999766
Q ss_pred ecc-ccccc
Q 031924 140 SGF-LSLNV 147 (150)
Q Consensus 140 s~~-~~~~v 147 (150)
+++ .+..|
T Consensus 340 va~~~~~~v 348 (543)
T 1nir_A 340 TAANNSNKV 348 (543)
T ss_dssp EEEGGGTEE
T ss_pred EEecCCCeE
Confidence 543 34444
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-15 Score=100.67 Aligned_cols=137 Identities=7% Similarity=0.024 Sum_probs=97.7
Q ss_pred CeeecCcceEEEEcCCC---eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCCe-EEEEEccccccc---
Q 031924 1 MTFAADAMKLLGTSGDG---TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGT-VLLYSWGYFKDC--- 72 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~-i~i~~~~~~~~~--- 72 (150)
++|+|++++++++..++ .|.+||+++++.+..+... ....+++|+|+|++++++ ..++. +.+|++...+..
T Consensus 89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp EEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred eEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec
Confidence 46899999999655553 9999999999877766543 456899999999866544 55577 999998643322
Q ss_pred -ccccccccccceeEee-ecCCCEE-EEecCCCcEEEEeccCCee---eeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 73 -SDRFVGLSPNSVDALL-KLDEDRV-ITGSENGLISLVGILPNRI---IQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 73 -~~~~~~~~~~~v~~~~-~~~~~~l-~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
...+. .......+. +++++.+ +++..++.|++||+.+++. +..+..+ . .+..++|+|||++++.++
T Consensus 168 ~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~-~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 168 GQEFIS--GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-N-LPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp EEEEEC--SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-S-CCCCEEECTTSSEEEEEC
T ss_pred CCcccc--CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-C-CCceEEECCCCCEEEEEE
Confidence 11222 233455555 8899855 5555789999999988877 6666543 4 478899999999665443
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-15 Score=99.83 Aligned_cols=140 Identities=8% Similarity=-0.034 Sum_probs=101.8
Q ss_pred CeeecCcceEEEEc------------CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc
Q 031924 1 MTFAADAMKLLGTS------------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (150)
Q Consensus 1 i~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 68 (150)
++|+|++++++++. .++.|.+||+.+++....+.. ...+.+++|+|++++++++ ++.+.+||+..
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~ 163 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEA 163 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTT
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCC
Confidence 46899999988886 579999999999887766554 4457788999999988877 68899999853
Q ss_pred ccccccccccc-----------------------------------------------------------------cccc
Q 031924 69 FKDCSDRFVGL-----------------------------------------------------------------SPNS 83 (150)
Q Consensus 69 ~~~~~~~~~~~-----------------------------------------------------------------~~~~ 83 (150)
. +....+... +...
T Consensus 164 ~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 242 (337)
T 1pby_B 164 G-TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242 (337)
T ss_dssp T-EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred C-cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCc
Confidence 2 222111100 0011
Q ss_pred eeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 84 VDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+..+. +++++.++++ ++.|++||+.+++.+..+..+ . .+..++|+|+|+++++++.++.|.
T Consensus 243 ~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~i~ 304 (337)
T 1pby_B 243 YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-H-SYYSVNVSTDGSTVWLGGALGDLA 304 (337)
T ss_dssp EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-S-CCCEEEECTTSCEEEEESBSSEEE
T ss_pred eeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-C-ceeeEEECCCCCEEEEEcCCCcEE
Confidence 22344 7788888887 789999999998887777543 3 478999999999888877666553
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=114.39 Aligned_cols=137 Identities=11% Similarity=0.023 Sum_probs=99.4
Q ss_pred CeeecCcceEEEEcCC---------CeEEEEEcCCCeeeeeec---cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc
Q 031924 1 MTFAADAMKLLGTSGD---------GTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 68 (150)
++||||+++|++++.+ +.+.+||+.+++. ..+. .+...+..++|+|||+.|+.++. +.|++||+..
T Consensus 66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~ 143 (723)
T 1xfd_A 66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG 143 (723)
T ss_dssp EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS
T ss_pred EEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCC
Confidence 3699999999998764 7889999998865 2232 33445889999999999998876 7999999853
Q ss_pred ccccccccccccccce------------------eEee-ecCCCEEEEecCCC---------------------------
Q 031924 69 FKDCSDRFVGLSPNSV------------------DALL-KLDEDRVITGSENG--------------------------- 102 (150)
Q Consensus 69 ~~~~~~~~~~~~~~~v------------------~~~~-~~~~~~l~~~~~dg--------------------------- 102 (150)
++..+.... +...+ ..+. +|+|+.|++++.++
T Consensus 144 -g~~~~~~~~-~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (723)
T 1xfd_A 144 -KQAIRVVST-GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA 221 (723)
T ss_dssp -SCCEEEECC-CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred -CceEEEecC-CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCC
Confidence 333332222 22222 4555 89999999887543
Q ss_pred -------cEEEEeccCCeeeeeccCC------CCcceeEEEEcCCccEEEecc
Q 031924 103 -------LISLVGILPNRIIQPIAEH------SEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 103 -------~i~~~d~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~s~~ 142 (150)
.|++||+.+++....+..+ .. .+..++|+|||+++++.+
T Consensus 222 G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~-~~~~~~~SpDg~~l~~~~ 273 (723)
T 1xfd_A 222 GSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY-YITMVKWATSTKVAVTWL 273 (723)
T ss_dssp TSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE-EEEEEEESSSSEEEEEEE
T ss_pred CCCCCeeEEEEEECCCCceeEEeeCCccCCCccc-eeEEEEEeCCCeEEEEEE
Confidence 7999999887755555443 33 589999999999987654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-15 Score=101.07 Aligned_cols=140 Identities=8% Similarity=0.046 Sum_probs=94.7
Q ss_pred CeeecCcceEEEEcC---CCeEEEEEcCCCee--eeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEcccccc--c
Q 031924 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKD--C 72 (150)
Q Consensus 1 i~~~~~~~~l~~~~~---d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~--~ 72 (150)
++|+|+++ +++++. ++.|.+|++..++. +..+..+...+..++|+|+|++|++++ .++.+.+|++...+. .
T Consensus 45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~ 123 (347)
T 3hfq_A 45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL 123 (347)
T ss_dssp EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee
Confidence 47899999 555543 68999999987653 334344566788999999999888877 779999999853322 2
Q ss_pred ccccccc-c-------ccceeEee-ecCCCEEEEecCCCcEEEEecc-CCeee--eeccCCCCcceeEEEEcCCccEEEe
Q 031924 73 SDRFVGL-S-------PNSVDALL-KLDEDRVITGSENGLISLVGIL-PNRII--QPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 73 ~~~~~~~-~-------~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~-~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
...+... . ...+.++. +|+++++++...++.|++|++. +++.. ..+..+.+..+..++|+|||++++.
T Consensus 124 ~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v 203 (347)
T 3hfq_A 124 TDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFL 203 (347)
T ss_dssp EEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred cceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEE
Confidence 2222110 0 11355565 8899977777778999999998 44432 2222233334788999999996555
Q ss_pred c
Q 031924 141 G 141 (150)
Q Consensus 141 ~ 141 (150)
.
T Consensus 204 ~ 204 (347)
T 3hfq_A 204 A 204 (347)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=7e-15 Score=96.78 Aligned_cols=145 Identities=7% Similarity=0.020 Sum_probs=97.2
Q ss_pred CeeecCcceEEEEc-CCCeEEEEEcCC-Ceeee----eecc-CCCcEEEEEEEeCCCEEEee-cCCCeEEEEEcccc-cc
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVCNLRK-NTVQT----RSEF-SEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYF-KD 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~d~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~-~~ 71 (150)
++|+|+++++++++ .++.|.+||+.+ ++... .... ....+..++|+|++++++++ ..++.+.+|++... ++
T Consensus 134 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~ 213 (343)
T 1ri6_A 134 ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN 213 (343)
T ss_dssp CEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred EEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence 57999999888877 899999999987 64432 2222 33478899999999977554 58899999998531 11
Q ss_pred c--ccccc---ccc--ccceeEee-ecCCCEEE-EecCCCcEEEEecc--C--CeeeeeccCCCCcceeEEEEcCCccEE
Q 031924 72 C--SDRFV---GLS--PNSVDALL-KLDEDRVI-TGSENGLISLVGIL--P--NRIIQPIAEHSEYPIESLGIASVLCFI 138 (150)
Q Consensus 72 ~--~~~~~---~~~--~~~v~~~~-~~~~~~l~-~~~~dg~i~~~d~~--~--~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (150)
. ...+. ..+ ...+..+. +++++.++ +...++.|++||+. + .+.+..+..+ . .+..++|+|+|++|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l 291 (343)
T 1ri6_A 214 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE-T-QPRGFNVDHSGKYL 291 (343)
T ss_dssp CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS-S-SCCCEEECTTSSEE
T ss_pred EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC-C-ccceEEECCCCCEE
Confidence 1 11111 101 12344455 88888776 55578999999997 2 2344444333 3 37889999999987
Q ss_pred Eecc-ccccc
Q 031924 139 NSGF-LSLNV 147 (150)
Q Consensus 139 ~s~~-~~~~v 147 (150)
++++ .++.|
T Consensus 292 ~~~~~~~~~v 301 (343)
T 1ri6_A 292 IAAGQKSHHI 301 (343)
T ss_dssp EEECTTTCEE
T ss_pred EEecCCCCeE
Confidence 7766 34443
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.3e-16 Score=115.04 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=111.7
Q ss_pred Ceee-cCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCC-cEEEEEEEeCCCEEEeecCCCeEE-EEEcccccccccccc
Q 031924 1 MTFA-ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-ELTSVVLMKNGRKVVCGSQSGTVL-LYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~-i~~~~~~~~~~~~~~ 77 (150)
++|+ ||++.|+.++ ++.+.+|+...++.. .+..+.. .+..++|+ +|+.++.++.++.+. +|++.. ++ ...+.
T Consensus 301 ~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~-~~~l~ 375 (1045)
T 1k32_A 301 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT-GK-AEKFE 375 (1045)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-CC-EEECC
T ss_pred eeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC-CC-ceEec
Confidence 4689 9999999887 789999999887644 3556666 89999999 999999888888888 889752 23 23344
Q ss_pred cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
+ +...+..+. +|+|+.|++++.++.+++||+.+++.......|.. .+..++|+|||++|++++..
T Consensus 376 ~-~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~-~v~~~~~SpDG~~la~~~~~ 441 (1045)
T 1k32_A 376 E-NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-MITDFTISDNSRFIAYGFPL 441 (1045)
T ss_dssp C-CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCCEEECTTSCEEEEEEEE
T ss_pred C-CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCC-CccceEECCCCCeEEEEecC
Confidence 5 767777777 99999999999999999999998887777666767 58999999999999887654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-16 Score=113.32 Aligned_cols=137 Identities=11% Similarity=0.016 Sum_probs=99.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCC---cEEEEEEEeCCCEEEeecC---------CCeEEEEEccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE---ELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWGY 68 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------d~~i~i~~~~~ 68 (150)
++|+|++++++++ .|+.|++||+.+++....+..+.. .+.+++|+|||++|+.++. ++.+++||+..
T Consensus 21 ~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 21 PNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred cEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 4799999655554 699999999999887655554432 3889999999999988876 68999999853
Q ss_pred ccccc--cccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeecc-CCCCc----------------ceeE
Q 031924 69 FKDCS--DRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIA-EHSEY----------------PIES 128 (150)
Q Consensus 69 ~~~~~--~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~----------------~i~~ 128 (150)
++.. ..+. ..+..+. +|+|+.|+.+. ++.|++|++.+++..+... .+... ....
T Consensus 100 -g~~~~~~~l~----~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 100 -GEFVRGNELP----RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp -TEECCSSCCC----SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred -CccccceecC----cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 3332 2222 2345455 99999999885 7899999998877654331 22110 1148
Q ss_pred EEEcCCccEEEecccc
Q 031924 129 LGIASVLCFINSGFLS 144 (150)
Q Consensus 129 ~~~~~~~~~l~s~~~~ 144 (150)
++|+|||++|++++.+
T Consensus 174 ~~wSPDG~~la~~~~d 189 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFN 189 (719)
T ss_dssp EEECTTSSEEEEEEEE
T ss_pred EEECCCCCEEEEEEEC
Confidence 9999999999998764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.6e-16 Score=110.77 Aligned_cols=137 Identities=11% Similarity=0.044 Sum_probs=101.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++|+||+++|++++. +.|.+||+.+++ ....+..+...+..++|+|||++|+.++ ++.|++||+.. ++.......
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~-g~~~~~~~~ 190 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS-GRQMQLTAD 190 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT-TEEEECCCC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC-CCEEEeccC
Confidence 479999999999876 899999999872 3445566777899999999999999886 46899999863 333332222
Q ss_pred ccccc----------------eeEee-ecCCCEEEEecCCC---------------------------------cEEEEe
Q 031924 79 LSPNS----------------VDALL-KLDEDRVITGSENG---------------------------------LISLVG 108 (150)
Q Consensus 79 ~~~~~----------------v~~~~-~~~~~~l~~~~~dg---------------------------------~i~~~d 108 (150)
+... +..+. +|+|+.|++++.|+ .|++||
T Consensus 191 -~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 191 -GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp -CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred -CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 2221 24444 89999999887665 788899
Q ss_pred ccC-Ceeeeecc--CCCCcceeEEEEcCCccEEEeccc
Q 031924 109 ILP-NRIIQPIA--EHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 109 ~~~-~~~~~~~~--~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
+.+ ++...... .|.. .+..++| |||++|+.++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~-~~~~~~~-pDg~~l~~~~~ 305 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQDI-YLARVNW-RDPQHLSFQRQ 305 (741)
T ss_dssp SSTTCCCEEECCCSCSSE-EEEEEEE-EETTEEEEEEE
T ss_pred CCCCCceEEecCCCCcce-EEEEEEe-CCCCEEEEEEe
Confidence 987 76544432 3545 5999999 99999986654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.2e-16 Score=109.40 Aligned_cols=133 Identities=7% Similarity=-0.070 Sum_probs=103.3
Q ss_pred CeeecCcceEEEEcCC----CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCC--eEEEEEccccccccc
Q 031924 1 MTFAADAMKLLGTSGD----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSD 74 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~i~~~~~~~~~~~ 74 (150)
++|+|||++|+.++.+ ..|++||+.+++.. .+..+...+..++|+|||+.|+++..++ .|++||+.. ++..
T Consensus 155 ~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~- 231 (582)
T 3o4h_A 155 FVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD-GSVE- 231 (582)
T ss_dssp EEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-CCEE-
T ss_pred EEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC-CcEE-
Confidence 3689999999987766 78999999988654 5677788899999999999999888888 899999863 3333
Q ss_pred ccccccccceeE-e--------eecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 75 RFVGLSPNSVDA-L--------LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 75 ~~~~~~~~~v~~-~--------~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
.+.+ +...+.. . .+|+|.++++++.++.+++|++ ++.... ..+ .+..++|+ +++++++++..
T Consensus 232 ~~~~-~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~~-~v~~~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 232 DLEL-PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQG-NHGRVVLW-RGKLVTSHTSL 302 (582)
T ss_dssp ECCC-SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CSS-EEEEEEEE-TTEEEEEEEET
T ss_pred EccC-CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CCC-ceEEEEec-CCEEEEEEcCC
Confidence 4444 4443332 1 4789988899999999999999 665542 234 48899999 99998877654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.3e-16 Score=109.34 Aligned_cols=138 Identities=6% Similarity=-0.092 Sum_probs=102.1
Q ss_pred eeecCcce-EEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC----CeEEEEEccccccccccc
Q 031924 2 TFAADAMK-LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 2 ~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~~~~~~~~~~~~~ 76 (150)
+|+|+++. ++++..++.+.+||+.+++.......+ . .+++|+|||++++.++.+ +.|++||+.. ++ ...+
T Consensus 116 ~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~-~~~l 190 (582)
T 3o4h_A 116 SGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GG-LRVF 190 (582)
T ss_dssp EEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-CC-CEEE
T ss_pred eeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CC-ceEe
Confidence 57888763 333334455669999988755443332 2 789999999999987766 7899999752 33 3455
Q ss_pred ccccccceeEee-ecCCCEEEEecCCC--cEEEEeccCCeeeeeccCCCCcceeEEE--------EcCCccEEEeccccc
Q 031924 77 VGLSPNSVDALL-KLDEDRVITGSENG--LISLVGILPNRIIQPIAEHSEYPIESLG--------IASVLCFINSGFLSL 145 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~s~~~~~ 145 (150)
.. +...+.... +|+|+.|+++..++ .|++||+.+++.. .+..+.. .+..++ |+|||.++++++.++
T Consensus 191 ~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g 267 (582)
T 3o4h_A 191 DS-GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREG 267 (582)
T ss_dssp CC-SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred ec-CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence 66 777777776 99999999888888 8999999888776 6666655 466666 999998888887776
Q ss_pred cc
Q 031924 146 NV 147 (150)
Q Consensus 146 ~v 147 (150)
.+
T Consensus 268 ~~ 269 (582)
T 3o4h_A 268 RS 269 (582)
T ss_dssp EE
T ss_pred cE
Confidence 54
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-15 Score=107.00 Aligned_cols=141 Identities=10% Similarity=0.014 Sum_probs=101.9
Q ss_pred CeeecCcceEEEEc---------------------------------CCCeEEEEEcCCCeeeeeec--cCCCcEEEEEE
Q 031924 1 MTFAADAMKLLGTS---------------------------------GDGTLSVCNLRKNTVQTRSE--FSEEELTSVVL 45 (150)
Q Consensus 1 i~~~~~~~~l~~~~---------------------------------~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~ 45 (150)
+.|+||+++|++++ .+..|.+||+.+++...... .+...+..++|
T Consensus 186 ~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 265 (706)
T 2z3z_A 186 TFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSW 265 (706)
T ss_dssp EEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEE
Confidence 36999999999987 45789999999887544332 45678999999
Q ss_pred EeCCCEEEeecCCC-----eEEEEEcccccccccccc-cccccc---eeEee-ec--CCCEEEEecCCCcEEEEecc-CC
Q 031924 46 MKNGRKVVCGSQSG-----TVLLYSWGYFKDCSDRFV-GLSPNS---VDALL-KL--DEDRVITGSENGLISLVGIL-PN 112 (150)
Q Consensus 46 ~~~~~~l~~~~~d~-----~i~i~~~~~~~~~~~~~~-~~~~~~---v~~~~-~~--~~~~l~~~~~dg~i~~~d~~-~~ 112 (150)
+|||++|++++.++ .|.+||+.. ++....+. ..+... +..+. ++ +|++++++..|+.+++|.+. ++
T Consensus 266 spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~ 344 (706)
T 2z3z_A 266 SPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG 344 (706)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred ECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence 99999999877665 899999863 31222221 102221 23344 78 89999999999999999876 56
Q ss_pred eeeeeccCCCCcceeE-EEEcCCccEEEeccc
Q 031924 113 RIIQPIAEHSEYPIES-LGIASVLCFINSGFL 143 (150)
Q Consensus 113 ~~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~~ 143 (150)
+.+..+..+.. .+.. ++|+|+|+.|+.++.
T Consensus 345 ~~~~~l~~~~~-~v~~~~~~spdg~~l~~~~~ 375 (706)
T 2z3z_A 345 RLIRQVTKGEW-EVTNFAGFDPKGTRLYFEST 375 (706)
T ss_dssp CEEEECCCSSS-CEEEEEEECTTSSEEEEEES
T ss_pred CEEEecCCCCe-EEEeeeEEcCCCCEEEEEec
Confidence 66677766655 5766 799999987765443
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-14 Score=94.70 Aligned_cols=142 Identities=11% Similarity=0.134 Sum_probs=96.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcC-CCeee--eeecc-CCCcEEEEEEEeCCCEEEe-ecCCCeEEEEEccc-ccc--c
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLR-KNTVQ--TRSEF-SEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGY-FKD--C 72 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~~~~~-~~~--~ 72 (150)
++|+|+++++++...++.|.+|++. .++.. ..... .......++|+|+|+++++ ...++.+.+|++.. .++ .
T Consensus 146 ~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 146 TDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence 4689999966666778999999998 45432 22222 2336788999999996655 56789999999863 122 1
Q ss_pred ccccccccc------cceeEee-ecCCCEE-EEecCCCcEEEEeccCC---eeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 73 SDRFVGLSP------NSVDALL-KLDEDRV-ITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 73 ~~~~~~~~~------~~v~~~~-~~~~~~l-~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
...+.. .+ ..+..+. +++|+++ ++...++.|.+|++... +.+..+..+.. .+..++|+|||++|+++
T Consensus 226 ~~~~~~-~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~ 303 (347)
T 3hfq_A 226 LGIVKT-IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVV 303 (347)
T ss_dssp EEEEES-SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEE
T ss_pred eeeeee-cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEE
Confidence 222221 11 3355565 8999977 55566899999998632 34555545444 47899999999988776
Q ss_pred ccc
Q 031924 142 FLS 144 (150)
Q Consensus 142 ~~~ 144 (150)
+..
T Consensus 304 ~~~ 306 (347)
T 3hfq_A 304 NQN 306 (347)
T ss_dssp ETT
T ss_pred EcC
Confidence 543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-14 Score=95.71 Aligned_cols=139 Identities=9% Similarity=0.089 Sum_probs=93.9
Q ss_pred CeeecCcceEEEEc-CCCeEEEEEcCCCe-------e------eeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEE
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNT-------V------QTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYS 65 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~d~~~~~-------~------~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~ 65 (150)
++|+|+++++++++ .++.+.+|++.... . .............++|+|+|+++++++ .++.|.+|+
T Consensus 160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 239 (361)
T 3scy_A 160 VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFR 239 (361)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEE
Confidence 46899999666554 68999999987543 1 111223345678999999999887766 689999999
Q ss_pred ccccccc--cccccc--ccccceeEee-ecCCCEEEEecC--CCcEEEEecc--CCe--eeeeccCCCCcceeEEEEcCC
Q 031924 66 WGYFKDC--SDRFVG--LSPNSVDALL-KLDEDRVITGSE--NGLISLVGIL--PNR--IIQPIAEHSEYPIESLGIASV 134 (150)
Q Consensus 66 ~~~~~~~--~~~~~~--~~~~~v~~~~-~~~~~~l~~~~~--dg~i~~~d~~--~~~--~~~~~~~~~~~~i~~~~~~~~ 134 (150)
+.. +.. ...+.. .+......+. +++|++|+++.. ++.|.+|++. +++ .+..+.. .. .+..++|+||
T Consensus 240 ~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~-~~~~~~~spd 316 (361)
T 3scy_A 240 YAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GI-HPRNFIITPN 316 (361)
T ss_dssp EET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SS-CCCEEEECTT
T ss_pred ecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CC-CCceEEECCC
Confidence 862 222 222221 0223345665 899998866554 5899999985 344 3444433 33 4789999999
Q ss_pred ccEEEecc
Q 031924 135 LCFINSGF 142 (150)
Q Consensus 135 ~~~l~s~~ 142 (150)
|++|++++
T Consensus 317 g~~l~~~~ 324 (361)
T 3scy_A 317 GKYLLVAC 324 (361)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEE
Confidence 99888776
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=108.90 Aligned_cols=143 Identities=13% Similarity=0.065 Sum_probs=101.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCC-----CeeeeeeccCCCc--------------EEEEEEEeCCCEEEeec-----
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRK-----NTVQTRSEFSEEE--------------LTSVVLMKNGRKVVCGS----- 56 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~----- 56 (150)
++|+||++.|+.+ .++.|++||+.+ ++........... +.++.|+|||++|++++
T Consensus 126 ~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~ 204 (706)
T 2z3z_A 126 LDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSM 204 (706)
T ss_dssp CEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTT
T ss_pred CcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCC
Confidence 4799999999986 678999999998 7655433333232 47899999999999887
Q ss_pred ----------------------------CCCeEEEEEccccccccccc--ccccccceeEee-ecCCCEEEEecCCC---
Q 031924 57 ----------------------------QSGTVLLYSWGYFKDCSDRF--VGLSPNSVDALL-KLDEDRVITGSENG--- 102 (150)
Q Consensus 57 ----------------------------~d~~i~i~~~~~~~~~~~~~--~~~~~~~v~~~~-~~~~~~l~~~~~dg--- 102 (150)
.+..|++||+.. ++..... .. +...+..+. +|+|+.|++++.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~ 282 (706)
T 2z3z_A 205 VKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT-GKTVYLQTGEP-KEKFLTNLSWSPDENILYVAEVNRAQN 282 (706)
T ss_dssp SCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT-TEEEECCCCSC-TTCEEEEEEECTTSSEEEEEEECTTSC
T ss_pred CceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC-CceEeeccCCC-CceeEeeEEEECCCCEEEEEEeCCCCC
Confidence 446799999863 3322222 13 555677776 89999998877665
Q ss_pred --cEEEEeccCCeeeeecc-C-CCCc--ceeEEEEcC--CccEEEecccccc
Q 031924 103 --LISLVGILPNRIIQPIA-E-HSEY--PIESLGIAS--VLCFINSGFLSLN 146 (150)
Q Consensus 103 --~i~~~d~~~~~~~~~~~-~-~~~~--~i~~~~~~~--~~~~l~s~~~~~~ 146 (150)
.|++||+.+++....+. . +... .+..++|+| ||+++++++.++.
T Consensus 283 ~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 283 ECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred eeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence 89999998883333221 1 1111 246789999 9999988876654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-15 Score=108.32 Aligned_cols=138 Identities=10% Similarity=-0.003 Sum_probs=100.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCC-----cEEEEEEEeCCCEEEeecCC---------CeEEEEEc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-----ELTSVVLMKNGRKVVCGSQS---------GTVLLYSW 66 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d---------~~i~i~~~ 66 (150)
+.|+||+++++++ |+.|++||+.+++....+..+.. ....+.|||||++|+.++.+ +.+.+||+
T Consensus 22 ~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~ 99 (740)
T 4a5s_A 22 LRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (740)
T ss_dssp EEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred cEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence 4799999988886 89999999999987666665543 22458899999999988775 56679998
Q ss_pred ccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeecc-CCCCc----------------ceeE
Q 031924 67 GYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIA-EHSEY----------------PIES 128 (150)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~----------------~i~~ 128 (150)
.. ++. ..+.. +...+.... +|+|+.|+.+ .++.|++|++.+++..+... .+... ....
T Consensus 100 ~~-~~~-~~l~~-~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~ 175 (740)
T 4a5s_A 100 NK-RQL-ITEER-IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (740)
T ss_dssp TT-TEE-CCSSC-CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred CC-CcE-EEccc-CCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcc
Confidence 63 333 34555 666677666 9999999887 47899999998776544321 22111 1235
Q ss_pred EEEcCCccEEEecccc
Q 031924 129 LGIASVLCFINSGFLS 144 (150)
Q Consensus 129 ~~~~~~~~~l~s~~~~ 144 (150)
+.|||||+.||..+.+
T Consensus 176 ~~wSpDg~~la~~~~d 191 (740)
T 4a5s_A 176 LWWSPNGTFLAYAQFN 191 (740)
T ss_dssp EEECTTSSEEEEEEEE
T ss_pred eEECCCCCEEEEEEEc
Confidence 8999999999987653
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-16 Score=112.09 Aligned_cols=134 Identities=12% Similarity=-0.002 Sum_probs=95.9
Q ss_pred CeeecCcceEEEEcC---------CCeEEEEEcCCCeee--eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc
Q 031924 1 MTFAADAMKLLGTSG---------DGTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 69 (150)
++|||||++|+.++. ++.|++||+.+++.+ ..+ ...+..++|+|||+.|+.+. ++.|++|++..
T Consensus 65 ~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~- 139 (719)
T 1z68_A 65 YGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG- 139 (719)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTT-
T ss_pred EEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCC-
Confidence 369999999998876 789999999998762 222 24678899999999998885 78999999853
Q ss_pred ccccccc-ccccccce-----------------eEee-ecCCCEEEEecCCC----------------------------
Q 031924 70 KDCSDRF-VGLSPNSV-----------------DALL-KLDEDRVITGSENG---------------------------- 102 (150)
Q Consensus 70 ~~~~~~~-~~~~~~~v-----------------~~~~-~~~~~~l~~~~~dg---------------------------- 102 (150)
++..+.. .+ +...+ ..+. +|+|+.|++++.|.
T Consensus 140 g~~~~l~~~~-~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 140 DPPFQITFNG-RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp SCCEECCCCC-BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCcEEEecCC-CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 2322211 12 22211 2454 99999999887652
Q ss_pred ------cEEEEeccCCeee---e-----eccCCCCcceeEEEEcCCccEEEec
Q 031924 103 ------LISLVGILPNRII---Q-----PIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 103 ------~i~~~d~~~~~~~---~-----~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
.|++||+.+++.. + .+..|.. .+..++|+||++++++.
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~SpD~~~~~~~ 270 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY-YFSWLTWVTDERVCLQW 270 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE-EEEEEEESSSSEEEEEE
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCCcc-eEEEeEEeCCCeEEEEE
Confidence 7889999876642 1 1234555 48999999999887773
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-14 Score=95.94 Aligned_cols=136 Identities=10% Similarity=0.023 Sum_probs=98.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCC-CcEEEEEEEeCCCEE-EeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++++++++++++++.+++|.+||..+++....+.... ..+..++|+|+++++ ++...++.|.+||+.. ++....+..
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~~~~~~ 83 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANL 83 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEES
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEEEEEEc
Confidence 4577888999999999999999999998877665443 256789999999866 4556789999999853 344444432
Q ss_pred cc-----ccceeEee-ecCCCEEEEecCC------------CcEEEEeccCCeee---eeccCCCCcceeEEEEcCCccE
Q 031924 79 LS-----PNSVDALL-KLDEDRVITGSEN------------GLISLVGILPNRII---QPIAEHSEYPIESLGIASVLCF 137 (150)
Q Consensus 79 ~~-----~~~v~~~~-~~~~~~l~~~~~d------------g~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~ 137 (150)
.+ ...+..+. +++++.+++++.+ +.|.+||+.+++.. ..+. +.. .+.+++|+|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~-~~~~~~~s~dg~l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPR-QVYLMRAADDGSL 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCS-SCCCEEECTTSCE
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCC-cccceeECCCCcE
Confidence 02 12244444 8899999988865 89999999875433 3332 333 4888999999995
Q ss_pred EE
Q 031924 138 IN 139 (150)
Q Consensus 138 l~ 139 (150)
++
T Consensus 162 ~~ 163 (349)
T 1jmx_B 162 YV 163 (349)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-14 Score=93.03 Aligned_cols=132 Identities=11% Similarity=-0.007 Sum_probs=97.6
Q ss_pred ceEEEEcCCCeEEEEEcCCCeeeeeeccCCC--cEEEEEEEeCCCEE-EeecCCCeEEEEEccccccccccccccc----
Q 031924 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE--ELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGLS---- 80 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~~---- 80 (150)
+++++++.++.|.+||..+++.+..+..... .+..++|+|+++.+ +++..++.|.+||+.. ++....+...+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEcCCcccc
Confidence 5788899999999999999988776653322 47889999999766 5566789999999853 45444444201
Q ss_pred ccceeEee-ecCCCEEEEec------------CCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 81 PNSVDALL-KLDEDRVITGS------------ENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~------------~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
...+..+. +++++.++++. .++.|++||+.+++....+.. .. .+..++|+|+|+++++++
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~~~ 153 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR-QITMLAWARDGSKLYGLG 153 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS-SCCCEEECTTSSCEEEES
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC-CcceeEECCCCCEEEEeC
Confidence 11344444 88998888875 579999999998887777654 23 478899999999877763
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=96.00 Aligned_cols=138 Identities=7% Similarity=-0.019 Sum_probs=95.6
Q ss_pred CeeecCcceEEEEcCC------------CeEEEEEcCCCeee---eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEE
Q 031924 1 MTFAADAMKLLGTSGD------------GTLSVCNLRKNTVQ---TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d------------~~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~ 65 (150)
++|+|+++++++++.+ +.|.+||+++++.. .... +...+.+++|+|+|+ +++++. .+.+||
T Consensus 97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d 172 (349)
T 1jmx_B 97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMD 172 (349)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEEC
T ss_pred eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEe
Confidence 4689999999998755 89999999885432 2222 334678899999999 555544 499999
Q ss_pred cccccccccccccccc----------------------------------------------------------------
Q 031924 66 WGYFKDCSDRFVGLSP---------------------------------------------------------------- 81 (150)
Q Consensus 66 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 81 (150)
... ++....+.. +.
T Consensus 173 ~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
T 1jmx_B 173 VKT-GKYTVALPL-RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF 250 (349)
T ss_dssp TTT-CCEEEEECS-TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE
T ss_pred CCC-Cceeccccc-cccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc
Confidence 853 333333321 11
Q ss_pred ----cceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 82 ----NSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 82 ----~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
..+..+. ++ +++.++++ ++.|++||+.+++.+..+... . .+..++|+|+|++|++++.++.|.
T Consensus 251 ~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~v~ 319 (349)
T 1jmx_B 251 ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-H-TYYCVAFDKKGDKLYLGGTFNDLA 319 (349)
T ss_dssp EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-S-CCCEEEECSSSSCEEEESBSSEEE
T ss_pred ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-C-CccceEECCCCCEEEEecCCCeEE
Confidence 0111222 47 88888887 889999999998887776433 3 377899999999888776665543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-14 Score=95.77 Aligned_cols=139 Identities=8% Similarity=0.086 Sum_probs=94.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcC-CCeeeeeecc-CCCcEEEEEEEeCCCE--EEeec-------------CCCeEEE
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLR-KNTVQTRSEF-SEEELTSVVLMKNGRK--VVCGS-------------QSGTVLL 63 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~--l~~~~-------------~d~~i~i 63 (150)
++|+|++++|++++.+ .|.+|++. +++....... ..+....++|+|+|++ +++++ .++.+.+
T Consensus 45 ~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v 123 (365)
T 1jof_A 45 MTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV 123 (365)
T ss_dssp EEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred EEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEE
Confidence 4689999999988877 99999997 7765432221 1123456889999994 45554 6899999
Q ss_pred EEcccccccccccc----cccccceeEee-ecCCCEEEEec-CCCcEEEEecc-CCeee--eecc--CCCCcceeEEEEc
Q 031924 64 YSWGYFKDCSDRFV----GLSPNSVDALL-KLDEDRVITGS-ENGLISLVGIL-PNRII--QPIA--EHSEYPIESLGIA 132 (150)
Q Consensus 64 ~~~~~~~~~~~~~~----~~~~~~v~~~~-~~~~~~l~~~~-~dg~i~~~d~~-~~~~~--~~~~--~~~~~~i~~~~~~ 132 (150)
|++...++....+. . +...+..+. +|+|++++++. .++.|++|++. +++.. ..+. .+.. .+..++|+
T Consensus 124 ~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~-~p~~~~~s 201 (365)
T 1jof_A 124 FSVSETGKLEKNVQNYEYQ-ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD-HPRWVAMH 201 (365)
T ss_dssp EEECTTCCEEEEEEEEECC-TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC-CEEEEEEC
T ss_pred EccCCCCcCcceEeeEEeC-CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC-CCCEeEEC
Confidence 99864344333222 1 234456666 89999877665 46899999997 66542 2332 1234 58899999
Q ss_pred CCccEEEecc
Q 031924 133 SVLCFINSGF 142 (150)
Q Consensus 133 ~~~~~l~s~~ 142 (150)
|||+++++++
T Consensus 202 pdg~~l~v~~ 211 (365)
T 1jof_A 202 PTGNYLYALM 211 (365)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9999887654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-14 Score=101.20 Aligned_cols=141 Identities=11% Similarity=0.005 Sum_probs=99.2
Q ss_pred CeeecCcceEEEEcCC----------CeEEEEEcCC------Ceeeeeec-cCCCcEEEEEEEeCCCEEEeecCC-----
Q 031924 1 MTFAADAMKLLGTSGD----------GTLSVCNLRK------NTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQS----- 58 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d----------~~i~i~d~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d----- 58 (150)
++|+||++.|+.++.+ ..|.+||+.+ ++. ..+. .+...+..++|+|||++|+..+.+
T Consensus 135 ~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~ 213 (662)
T 3azo_A 135 PVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMP 213 (662)
T ss_dssp EEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCT
T ss_pred cEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCC
Confidence 3699999999988776 5899999988 543 3444 555678889999999999877644
Q ss_pred ---CeEEEEEccccc---ccccccccccccceeEee-ecCCCEEEEecCCC--cEEEEeccCCeeeeeccCCCCc-----
Q 031924 59 ---GTVLLYSWGYFK---DCSDRFVGLSPNSVDALL-KLDEDRVITGSENG--LISLVGILPNRIIQPIAEHSEY----- 124 (150)
Q Consensus 59 ---~~i~i~~~~~~~---~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~----- 124 (150)
..|++||+...+ +......+ +...+.... +++|++++++..++ .|+.||+.+++.......+...
T Consensus 214 ~~~~~i~~~d~~~~g~~~~~~~l~~~-~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w 292 (662)
T 3azo_A 214 WEGTELKTARVTEDGRFADTRTLLGG-PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLW 292 (662)
T ss_dssp TTCEEEEEEEECTTSCEEEEEEEEEE-TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCC
T ss_pred CCCcEEEEEEECCCCcccccEEeCCC-CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccc
Confidence 379999986223 22222233 456677666 88999888888888 6666677666654444332221
Q ss_pred --ceeEEEEcCCccEEEeccc
Q 031924 125 --PIESLGIASVLCFINSGFL 143 (150)
Q Consensus 125 --~i~~~~~~~~~~~l~s~~~ 143 (150)
.+..++|+|+++++++++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~ 313 (662)
T 3azo_A 293 TPGMRWFAPLANGLIAVVHGK 313 (662)
T ss_dssp STTCCSEEECTTSCEEEEEBS
T ss_pred cccCceEeEeCCCEEEEEEEc
Confidence 1567899999999888765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.3e-13 Score=88.89 Aligned_cols=143 Identities=6% Similarity=-0.062 Sum_probs=93.8
Q ss_pred CeeecCcce--EEEEc-------------CCCeEEEEEcC-CCeeeeeec----cCCCcEEEEEEEeCCCEEEeecC-CC
Q 031924 1 MTFAADAMK--LLGTS-------------GDGTLSVCNLR-KNTVQTRSE----FSEEELTSVVLMKNGRKVVCGSQ-SG 59 (150)
Q Consensus 1 i~~~~~~~~--l~~~~-------------~d~~i~i~d~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~-d~ 59 (150)
++|+|++++ ++++. .++.+.+|++. .++....+. .+...+.+++|+|+|+++++++. ++
T Consensus 88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~ 167 (365)
T 1jof_A 88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTAN 167 (365)
T ss_dssp GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCC
Confidence 468999994 44553 68899999997 455443332 24567899999999998887654 67
Q ss_pred eEEEEEccccccc--ccccccc-cccceeEee-ecCCCEEEEecC-CCcEEEEecc--CCeee------eeccCC-CC-c
Q 031924 60 TVLLYSWGYFKDC--SDRFVGL-SPNSVDALL-KLDEDRVITGSE-NGLISLVGIL--PNRII------QPIAEH-SE-Y 124 (150)
Q Consensus 60 ~i~i~~~~~~~~~--~~~~~~~-~~~~v~~~~-~~~~~~l~~~~~-dg~i~~~d~~--~~~~~------~~~~~~-~~-~ 124 (150)
.|++|++...++. ...+... +...+..+. +++|+++++++. ++.|.+|++. +++.. ..+... .+ .
T Consensus 168 ~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 247 (365)
T 1jof_A 168 KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD 247 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred EEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence 9999998522222 2222210 234456665 899998877664 7899999765 45432 222211 01 1
Q ss_pred -------ceeEEE-EcCCccEEEeccc
Q 031924 125 -------PIESLG-IASVLCFINSGFL 143 (150)
Q Consensus 125 -------~i~~~~-~~~~~~~l~s~~~ 143 (150)
.+..++ |+|||++|+++..
T Consensus 248 ~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 248 PETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp TTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred cccccccccccEEEECCCCCEEEEECC
Confidence 278899 9999998876554
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-13 Score=92.25 Aligned_cols=138 Identities=9% Similarity=0.001 Sum_probs=98.5
Q ss_pred eeecCcceEEEEcC-CC--eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 2 TFAADAMKLLGTSG-DG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 2 ~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
+|+||++.|+.++. ++ .|.+||+.+++.......+...+..+.|+|+|+.|+.++.++.+++||+.. ++.......
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-g~~~~~~~~ 120 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLAT-LEENVVYQV 120 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTT-CCEEEEEEC
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCC-Ccceeeeec
Confidence 58999999988876 66 488899998877665555555555678999999999999999999999863 333333333
Q ss_pred cccccee---EeeecCCCEEEEe----------------------cCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC
Q 031924 79 LSPNSVD---ALLKLDEDRVITG----------------------SENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS 133 (150)
Q Consensus 79 ~~~~~v~---~~~~~~~~~l~~~----------------------~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~ 133 (150)
+...+. ...+++++.++.. ..+..|++||+.+++..... .+.. .+..++|+|
T Consensus 121 -~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~-~~~~~~~sp 197 (388)
T 3pe7_A 121 -PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQ-WLGHPIYRP 197 (388)
T ss_dssp -CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESS-CEEEEEEET
T ss_pred -hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee-cCCc-cccccEECC
Confidence 333332 2237788877642 24468999999887654443 4445 488999999
Q ss_pred -CccEEEeccc
Q 031924 134 -VLCFINSGFL 143 (150)
Q Consensus 134 -~~~~l~s~~~ 143 (150)
||+.|+....
T Consensus 198 ~dg~~l~~~~~ 208 (388)
T 3pe7_A 198 YDDSTVAFCHE 208 (388)
T ss_dssp TEEEEEEEEEC
T ss_pred CCCCEEEEEEe
Confidence 9998876654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=99.97 Aligned_cols=135 Identities=13% Similarity=0.040 Sum_probs=93.9
Q ss_pred eeecCcceEEEEcCC---------CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccc
Q 031924 2 TFAADAMKLLGTSGD---------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 72 (150)
.||||+++|+.++.+ +.+.+||+++++.. .+..+...+...+|||||+.|+.+ .++.|++|+... +..
T Consensus 68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~-~~~ 144 (740)
T 4a5s_A 68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPN-LPS 144 (740)
T ss_dssp EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTT-SCC
T ss_pred EECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCC-Cce
Confidence 579999999998776 56679999998754 456667789999999999999887 568999999853 222
Q ss_pred cc-ccccccccce-----------------eEee-ecCCCEEEEecCCC-------------------------------
Q 031924 73 SD-RFVGLSPNSV-----------------DALL-KLDEDRVITGSENG------------------------------- 102 (150)
Q Consensus 73 ~~-~~~~~~~~~v-----------------~~~~-~~~~~~l~~~~~dg------------------------------- 102 (150)
.+ +..+ +...+ ..+. +|+|+.|+..+.|.
T Consensus 145 ~~lt~~g-~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 145 YRITWTG-KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA 223 (740)
T ss_dssp EECCSCC-BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred EEEcCCC-CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence 21 1122 22222 1244 89999988875321
Q ss_pred -----cEEEEeccC---C---eeeeecc-----CCCCcceeEEEEcCCccEEEec
Q 031924 103 -----LISLVGILP---N---RIIQPIA-----EHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 103 -----~i~~~d~~~---~---~~~~~~~-----~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
.+++||+.+ + +...... .+... +..++|+|||+.++..
T Consensus 224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHY-LCDVTWATQERISLQW 277 (740)
T ss_dssp CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEE-EEEEEEEETTEEEEEE
T ss_pred cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeE-EEEEEEeCCCeEEEEE
Confidence 478889887 6 3322221 25554 8999999999966543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-12 Score=83.36 Aligned_cols=142 Identities=8% Similarity=0.061 Sum_probs=101.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeec--cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
|+++|+++++++...++.|.+||.. ++....+. .+...+..++++++|+.+++...++.|++||.. ++....+..
T Consensus 126 i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~ 202 (286)
T 1q7f_A 126 VTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQIGG 202 (286)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEEESC
T ss_pred EEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC--CCEEEEEcc
Confidence 4678899888887788999999965 44544443 334568999999999988887888999999974 344444432
Q ss_pred c-cccceeEee-ecCCCEEEEecCCC-cEEEEeccCCeeeeeccCCCC-cceeEEEEcCCccEEEeccccccc
Q 031924 79 L-SPNSVDALL-KLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSE-YPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 79 ~-~~~~v~~~~-~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
. +......++ .++|+++++...++ .|++||. +++.+..+..+.. ..+..++++|+|+++++. .+..|
T Consensus 203 ~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~-~~~~v 273 (286)
T 1q7f_A 203 EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLAS-KDYRL 273 (286)
T ss_dssp TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEE-TTTEE
T ss_pred CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEEC-CCCeE
Confidence 0 224556666 78899888888776 9999996 4555555544322 137789999999988874 45444
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-12 Score=85.33 Aligned_cols=145 Identities=10% Similarity=-0.039 Sum_probs=103.3
Q ss_pred CeeecCcceEEEEcCC------------------------CeEEEEEcCCCeeeeeec-cCCCcEEEEEEEeCCCEEEee
Q 031924 1 MTFAADAMKLLGTSGD------------------------GTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCG 55 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d------------------------~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~ 55 (150)
|+++|+++++++...+ +.|.+||..+++...... .+......++++++|+.+++.
T Consensus 29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d 108 (329)
T 3fvz_A 29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTD 108 (329)
T ss_dssp EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEE
Confidence 4789999998888776 479999998888765543 344578999999999988888
Q ss_pred cCCCeEEEEEcccccccccccc---------cccccceeEee-ec-CCCEEEEec-CCCcEEEEeccCCeeeeeccCCCC
Q 031924 56 SQSGTVLLYSWGYFKDCSDRFV---------GLSPNSVDALL-KL-DEDRVITGS-ENGLISLVGILPNRIIQPIAEHSE 123 (150)
Q Consensus 56 ~~d~~i~i~~~~~~~~~~~~~~---------~~~~~~v~~~~-~~-~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~ 123 (150)
..++.|++|+.......+..+. . +......+. .+ +++++++.+ .++.|++|+. +++.+..+.....
T Consensus 109 ~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~-~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~ 186 (329)
T 3fvz_A 109 VALHQVFKLDPHSKEGPLLILGRSMQPGSDQN-HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESS 186 (329)
T ss_dssp TTTTEEEEECTTCSSCCSEEESBTTBCCCSTT-CCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEEECEECC
T ss_pred CCCCEEEEEeCCCCeEEEEEecccCCCCCCcc-ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCC
Confidence 8899999999742211333331 2 233455666 77 788888886 6899999994 5666665532111
Q ss_pred ---------cceeEEEEcCC-ccEEEeccccccc
Q 031924 124 ---------YPIESLGIASV-LCFINSGFLSLNV 147 (150)
Q Consensus 124 ---------~~i~~~~~~~~-~~~l~s~~~~~~v 147 (150)
.....++++|+ ++++++...+..|
T Consensus 187 ~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I 220 (329)
T 3fvz_A 187 GSSPRPGQFSVPHSLALVPHLDQLCVADRENGRI 220 (329)
T ss_dssp SSSCCTTEESCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCCCCcccCCCcEEEEECCCCEEEEEECCCCEE
Confidence 12788999998 7887776665544
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.52 E-value=8.4e-13 Score=87.93 Aligned_cols=129 Identities=7% Similarity=0.058 Sum_probs=86.3
Q ss_pred CeeecCcceEEEEc-CCCeEEEEEcCCCee--eeee---ccCCCcEEEEEEEeCCCEEEeecC--CCeEEEEEccc-ccc
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNTV--QTRS---EFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGY-FKD 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~--~~~~---~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~~~~~-~~~ 71 (150)
++|+|+++++++++ .++.|.+|++.+++. +..+ ..+......++|+|+|++|+++.. ++.+.+|++.. .++
T Consensus 216 ~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~ 295 (361)
T 3scy_A 216 LIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT 295 (361)
T ss_dssp EEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC
T ss_pred EEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc
Confidence 47999999887776 689999999987754 2222 222345689999999999877665 48999999852 222
Q ss_pred --cccccccccccceeEee-ecCCCEEEEec-CCCcEEEEe--ccCCeeeeecc-CCCCcceeEEEEc
Q 031924 72 --CSDRFVGLSPNSVDALL-KLDEDRVITGS-ENGLISLVG--ILPNRIIQPIA-EHSEYPIESLGIA 132 (150)
Q Consensus 72 --~~~~~~~~~~~~v~~~~-~~~~~~l~~~~-~dg~i~~~d--~~~~~~~~~~~-~~~~~~i~~~~~~ 132 (150)
.+..+.. ...+..+. +|++++|++++ .++.|.+|+ ..+++...... .+.. .+.++.|.
T Consensus 296 ~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~-~p~~v~~~ 360 (361)
T 3scy_A 296 LTKVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVD-KPVCLKFV 360 (361)
T ss_dssp EEEEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECS-SEEEEEEE
T ss_pred EEEeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCC-CCeEEEEc
Confidence 2223322 23445555 89999887776 578999964 44666544332 2223 47788875
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-13 Score=96.09 Aligned_cols=139 Identities=10% Similarity=-0.053 Sum_probs=96.1
Q ss_pred ecCcce-EEEEcC-CCeEEEEEcC--C-Ceeeeeecc-----CCCcEEEEEEEeCCCEEEeecCC----------CeEEE
Q 031924 4 AADAMK-LLGTSG-DGTLSVCNLR--K-NTVQTRSEF-----SEEELTSVVLMKNGRKVVCGSQS----------GTVLL 63 (150)
Q Consensus 4 ~~~~~~-l~~~~~-d~~i~i~d~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------~~i~i 63 (150)
|||++. |+.++. +..|.++++. . ++ ...+.. +...+..++|+|||+.|+.++.+ ..|++
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~ 165 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA 165 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence 399998 776653 5677777766 2 43 334444 45678899999999999988766 58999
Q ss_pred EEccccc----ccccccc-cccccceeEee-ecCCCEEEEecCC--------CcEEEEecc-CC---eeeeeccCCCCcc
Q 031924 64 YSWGYFK----DCSDRFV-GLSPNSVDALL-KLDEDRVITGSEN--------GLISLVGIL-PN---RIIQPIAEHSEYP 125 (150)
Q Consensus 64 ~~~~~~~----~~~~~~~-~~~~~~v~~~~-~~~~~~l~~~~~d--------g~i~~~d~~-~~---~~~~~~~~~~~~~ 125 (150)
||+.... .....+. . +...+.... +|+|+.|+..+.+ ..|++||+. ++ +.......+.. .
T Consensus 166 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-~ 243 (662)
T 3azo_A 166 VPLDGSAAADRSAVRELSDD-AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-A 243 (662)
T ss_dssp EETTSTTTTCGGGSEESSCS-CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-C
T ss_pred EECCCCccccCCceeEEEec-CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-e
Confidence 9986310 2233444 4 445555555 8999999877754 379999998 56 44333333445 5
Q ss_pred eeEEEEcCCccEEEeccccc
Q 031924 126 IESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 126 i~~~~~~~~~~~l~s~~~~~ 145 (150)
+..++|+|||++++++..++
T Consensus 244 ~~~~~~spdg~l~~~~~~~~ 263 (662)
T 3azo_A 244 IAQAEWAPDGSLIVATDRTG 263 (662)
T ss_dssp EEEEEECTTSCEEEEECTTS
T ss_pred EcceEECCCCeEEEEECCCC
Confidence 89999999999888776655
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-12 Score=86.43 Aligned_cols=137 Identities=10% Similarity=-0.013 Sum_probs=94.9
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEE--EEeCCCEEEe----------------------ecC
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVV--LMKNGRKVVC----------------------GSQ 57 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~----------------------~~~ 57 (150)
.|+||++.|+.++.++.|++||+.+++.......+...+.... ++++++.++. ...
T Consensus 87 ~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (388)
T 3pe7_A 87 FLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKP 166 (388)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCC
Confidence 6999999999999999999999999876655555555554444 4788988873 234
Q ss_pred CCeEEEEEcccccccccccccccccceeEee-ec-CCCEEEEecCC------CcEEEEeccCCeeeeeccCCCC-cceeE
Q 031924 58 SGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KL-DEDRVITGSEN------GLISLVGILPNRIIQPIAEHSE-YPIES 128 (150)
Q Consensus 58 d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~-~~i~~ 128 (150)
+..|.+||+.. ++ ...+.. +...+.... +| +++.|+....+ ..|.++|...++. ..+..+.. ..+..
T Consensus 167 ~~~l~~~d~~~-g~-~~~l~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~ 242 (388)
T 3pe7_A 167 CCRLMRVDLKT-GE-STVILQ-ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTH 242 (388)
T ss_dssp CEEEEEEETTT-CC-EEEEEE-ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEE
T ss_pred cceEEEEECCC-Cc-eEEeec-CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCccccc
Confidence 57888999853 33 333444 555566665 88 89888776653 3788888765544 33333332 24778
Q ss_pred EEEcCCccEEEecc
Q 031924 129 LGIASVLCFINSGF 142 (150)
Q Consensus 129 ~~~~~~~~~l~s~~ 142 (150)
++|+|||+.|+..+
T Consensus 243 ~~~spdg~~l~~~~ 256 (388)
T 3pe7_A 243 EFWVPDGSALVYVS 256 (388)
T ss_dssp EEECTTSSCEEEEE
T ss_pred ceECCCCCEEEEEe
Confidence 99999999876544
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.4e-13 Score=89.76 Aligned_cols=132 Identities=9% Similarity=0.091 Sum_probs=92.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe---------eee-eeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---------VQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 70 (150)
+++++...++++++.+ .+.+|+++..+ ... ....... |..++| ++++|+++ .++.|++||++...
T Consensus 43 Lais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~ 117 (388)
T 1xip_A 43 LDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELS 117 (388)
T ss_dssp EEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTT
T ss_pred EEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhh
Confidence 4678888899999887 67779865432 111 1223455 999999 89999998 88999999986543
Q ss_pred ccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 71 DCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 71 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
....... +...+..+..... .+++++.||.+.+||+..++... +.. .|++++|+|+| ++.|..++.+
T Consensus 118 -~~~~~~~-~~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~----~~~-~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 118 -EFRTVTS-FEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQ----LAQ-NVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp -CEEEEEE-CSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEE----EEE-SEEEEEECSSE--EEEEETTSCE
T ss_pred -ccCccce-eecceeeEEecCC-CEEEEECCCCEEEEEccCCcccc----ccC-CceEEEEcCCc--eEEEEcCCcE
Confidence 2233444 5566666542222 38888999999999998776643 223 59999999999 4556666654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-12 Score=85.67 Aligned_cols=144 Identities=9% Similarity=0.007 Sum_probs=101.3
Q ss_pred Ceeec-CcceEEEEc-CCCeEEEEEcCCCeeeeeecc----------CCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcc
Q 031924 1 MTFAA-DAMKLLGTS-GDGTLSVCNLRKNTVQTRSEF----------SEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 1 i~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~ 67 (150)
|+++| +++++++.+ .++.|++|+ ..++.+..+.. +......++++|+ +..+++...++.|++|+..
T Consensus 148 ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 46888 777777776 689999999 45666555432 1234789999998 7777777888999999985
Q ss_pred cccccccccc--cccccceeEee-ec------CCCEEEEecCCCcEEEEeccCCeeeeecc---CCCCcceeEEEEcCCc
Q 031924 68 YFKDCSDRFV--GLSPNSVDALL-KL------DEDRVITGSENGLISLVGILPNRIIQPIA---EHSEYPIESLGIASVL 135 (150)
Q Consensus 68 ~~~~~~~~~~--~~~~~~v~~~~-~~------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~~i~~~~~~~~~ 135 (150)
.++.+..+. . +...+..+. .| +++..++...+..|++|+..+++.+..+. .+.. .+..++++|+|
T Consensus 227 -~G~~~~~~~~~~-~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG 303 (329)
T 3fvz_A 227 -TKEFVREIKHAS-FGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDG 303 (329)
T ss_dssp -TCCEEEEECCTT-TTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTS
T ss_pred -CCcEEEEEeccc-cCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCC
Confidence 345555553 2 334455555 45 33333333445689999999998888773 3444 48899999999
Q ss_pred cEEEecccccccc
Q 031924 136 CFINSGFLSLNVN 148 (150)
Q Consensus 136 ~~l~s~~~~~~v~ 148 (150)
.++++...+..|.
T Consensus 304 ~lyvad~~~~~I~ 316 (329)
T 3fvz_A 304 TVYIGDAHTNTVW 316 (329)
T ss_dssp EEEEEESSSCCEE
T ss_pred CEEEEECCCCEEE
Confidence 9888887776654
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-12 Score=86.21 Aligned_cols=126 Identities=10% Similarity=-0.009 Sum_probs=94.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
|+| +++.|+++ .++.|++||+.+.........++..+.++.+.+. .+++++.||.+.+||+... ... . +
T Consensus 93 l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~-~~~----~-~ 161 (388)
T 1xip_A 93 VCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK-STK----Q-L 161 (388)
T ss_dssp EEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC-CEE----E-E
T ss_pred EEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCC-ccc----c-c
Confidence 356 88899998 8899999999876544445556667888776654 3888899999999999633 222 1 3
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCee--eeec------c---CCCCcceeEEEEcCCccEEEe
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRI--IQPI------A---EHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~------~---~~~~~~i~~~~~~~~~~~l~s 140 (150)
...+++++ +++| ++.|..||.+++|+...++. ...+ . .|.. .|.++.|.+++.++++
T Consensus 162 ~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~-~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 162 AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEY-SPLSVTILSPQDFLAV 230 (388)
T ss_dssp EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTS-EEEEEEESSSSEEEEE
T ss_pred cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCe-eEEEEEEecCCeEEEE
Confidence 45688888 8888 67789999999999877664 4444 2 2444 6999999999999886
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-12 Score=92.42 Aligned_cols=137 Identities=7% Similarity=0.003 Sum_probs=91.1
Q ss_pred eeecCcceEEEEcCCC-----eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCe----------------
Q 031924 2 TFAADAMKLLGTSGDG-----TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT---------------- 60 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~---------------- 60 (150)
+||||+++|+.+..++ .|++||+.+++........ ..+..++|+|||+.|+.++.++.
T Consensus 131 ~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (710)
T 2xdw_A 131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK 209 (710)
T ss_dssp EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCE
Confidence 6999999998765432 8999999999765432222 22567899999999988877665
Q ss_pred EEEEEcccccc---cccccccccccceeEee-ecCCCEEEEecC-----CCcEEEEeccC------Ce-eeeeccCCCCc
Q 031924 61 VLLYSWGYFKD---CSDRFVGLSPNSVDALL-KLDEDRVITGSE-----NGLISLVGILP------NR-IIQPIAEHSEY 124 (150)
Q Consensus 61 i~i~~~~~~~~---~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~-----dg~i~~~d~~~------~~-~~~~~~~~~~~ 124 (150)
|++|++..... .+..... ++..+.... +++|++|+..+. +..|++||+.+ +. ....+..+..
T Consensus 210 v~~~~l~t~~~~~~~v~~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~- 287 (710)
T 2xdw_A 210 LYYHVLGTDQSEDILCAEFPD-EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE- 287 (710)
T ss_dssp EEEEETTSCGGGCEEEECCTT-CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS-
T ss_pred EEEEECCCCcccceEEeccCC-CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC-
Confidence 99999864321 1112222 333344554 899998887664 56899999976 42 3445545544
Q ss_pred ceeEEEEcCCccEEEecc
Q 031924 125 PIESLGIASVLCFINSGF 142 (150)
Q Consensus 125 ~i~~~~~~~~~~~l~s~~ 142 (150)
.+.. .|+|+|..|+..+
T Consensus 288 ~~~~-~~s~dg~~l~~~s 304 (710)
T 2xdw_A 288 GEYD-YVTNEGTVFTFKT 304 (710)
T ss_dssp SCEE-EEEEETTEEEEEE
T ss_pred cEEE-EEeccCCEEEEEE
Confidence 2443 5888887666544
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-11 Score=79.82 Aligned_cols=135 Identities=12% Similarity=0.113 Sum_probs=91.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC----CeEEEEEccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~~~~~~~~~~~~~ 76 (150)
++|+|++++++++..++.|.+||.++++.......+...+.+++++++|+.+++...+ +.|.+||... +.....+
T Consensus 50 ~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~-~~~~~~~ 128 (333)
T 2dg1_A 50 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-DNLQDII 128 (333)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-CSCEEEE
T ss_pred cEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC-CEEEEEE
Confidence 3688999988888889999999998887654443456789999999999887777666 6899999753 2222122
Q ss_pred c--cccccceeEee-ecCCCEEEEecC------CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEE
Q 031924 77 V--GLSPNSVDALL-KLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 77 ~--~~~~~~v~~~~-~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (150)
. . ....+..+. .++++++++... .+.|..+|..+++..... .... .+..++|+|+|+.+.
T Consensus 129 ~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~-~~~~i~~~~dg~~l~ 197 (333)
T 2dg1_A 129 EDLS-TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNIS-VANGIALSTDEKVLW 197 (333)
T ss_dssp CSSS-SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEES-SEEEEEECTTSSEEE
T ss_pred ccCc-cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCC-cccceEECCCCCEEE
Confidence 1 2 234566666 788888777654 356666676554433222 2223 378899999998543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.5e-12 Score=80.92 Aligned_cols=135 Identities=13% Similarity=0.063 Sum_probs=101.0
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCC-CcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc-ccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS-PNS 83 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~-~~~ 83 (150)
.+++|++++.++.|.+||.++++.+.++..+. ..+.++.+.|+|+.++ +.++.+..||. .++.+.++.. . ...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~--~G~~~W~~~~-~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR--DGRELWNIAA-PAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT--TSCEEEEEEC-CTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC--CCCEEEEEcC-CCCcc
Confidence 45789999999999999999999998887665 4688999999999888 35778999997 3567777664 3 234
Q ss_pred eeEee-ecCCCEEEEecC-CCcEEEEeccCCeeeeeccC------CCCcceeEEEEcCCccEEEeccccccc
Q 031924 84 VDALL-KLDEDRVITGSE-NGLISLVGILPNRIIQPIAE------HSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+.+.. .++|+.+++.+. ++.+..+|. +++.+..+.. +.. ....+++.++|+++++...++.|
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~-~~~~v~~~~~G~~lv~~~~~~~v 148 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHA-QFRQINKNKKGNYLVPLFATSEV 148 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGG-SCSCCEECTTSCEEEEETTTTEE
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccc-cccCceECCCCCEEEEecCCCEE
Confidence 55555 789999998877 778888886 5666555431 111 35566788999999887766554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-11 Score=77.64 Aligned_cols=138 Identities=9% Similarity=0.094 Sum_probs=97.6
Q ss_pred ee-ecCcceEEEEcC-CCeEEEEEcCCCeeeeeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc-
Q 031924 2 TF-AADAMKLLGTSG-DGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (150)
Q Consensus 2 ~~-~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~- 77 (150)
++ .++++++++... ++.|.+|| .+++.+..+. .+...+.+++++++|+.+++...++.|.+||.. ++....+.
T Consensus 83 ~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~ 159 (286)
T 1q7f_A 83 AVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGC 159 (286)
T ss_dssp EEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEEC
T ss_pred EEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCC
Confidence 45 356666666533 88999999 5566655553 334578999999999988887788999999964 34444442
Q ss_pred -cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCC--CcceeEEEEcCCccEEEeccccc
Q 031924 78 -GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHS--EYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 78 -~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
. +...+..+. .++++++++...++.|++||.. ++.+..+..+. . .+..++++++|+++++...+.
T Consensus 160 ~~-~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~-~p~~i~~d~~G~l~v~~~~~~ 228 (286)
T 1q7f_A 160 SK-HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITN-YPIGVGINSNGEILIADNHNN 228 (286)
T ss_dssp TT-TCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSC-SEEEEEECTTCCEEEEECSSS
T ss_pred CC-ccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccC-CCcEEEECCCCCEEEEeCCCC
Confidence 2 334456666 7788888888889999999984 55555554332 3 488999999999888876553
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-11 Score=77.55 Aligned_cols=145 Identities=6% Similarity=-0.093 Sum_probs=98.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
|+++|+++++++...++.|.+|+..+.............+.+++++++|+.+++...++.|.+|+.... ........ +
T Consensus 113 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~-~ 190 (270)
T 1rwi_B 113 LAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN-NQVVLPFT-D 190 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC-CEEECCCS-S
T ss_pred eEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC-ceEeeccc-C
Confidence 467888887777777889999976654333222233346788999999987777777889999997532 22221122 2
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
......+. .++|+++++...++.|..|+............+.. .+..++++++|+++++...++.|.
T Consensus 191 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~-~p~~i~~~~~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 191 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN-TPLAVAVDSDRTVYVADRGNDRVV 258 (270)
T ss_dssp CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCS-CEEEEEECTTCCEEEEEGGGTEEE
T ss_pred CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCC-CceeEEECCCCCEEEEECCCCEEE
Confidence 24456666 77888888887889999999865543322222223 488999999999888877776654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.38 E-value=4e-11 Score=77.54 Aligned_cols=138 Identities=6% Similarity=-0.079 Sum_probs=100.9
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccC-CCcEEEEEEEeCCCEEEeecC-CCeEEEEEcccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
.++|++++++ +.++.|..||. +++.+.++... ...+.++.+.++|+.+++.+. ++.+..+|. .++.+.++...
T Consensus 43 ~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~--~Gk~l~~~~~~ 117 (276)
T 3no2_A 43 AATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM--KGEVLSKTEFE 117 (276)
T ss_dssp EECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT--TSCEEEEEEEC
T ss_pred EECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC--CCCEEEEEecc
Confidence 5678999888 35778999998 78888877764 357889999999999998877 777777775 35554444310
Q ss_pred -----cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 80 -----SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 80 -----~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+......+. .++|+++++...++.|..||.. ++.+..+... . .+..+...++|+++++++....|
T Consensus 118 ~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~-~~~~~~~~~~g~~~v~~~~~~~v 188 (276)
T 3no2_A 118 TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-G-TPFSSAFLDNGDCLVACGDAHCF 188 (276)
T ss_dssp CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-S-CCCEEEECTTSCEEEECBTTSEE
T ss_pred CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-C-CccceeEcCCCCEEEEeCCCCeE
Confidence 111222233 6789999999999999999997 8888887554 3 35567788999988877665433
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-11 Score=80.73 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=88.8
Q ss_pred CeeecCcceEEEEcC---------------------------CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE
Q 031924 1 MTFAADAMKLLGTSG---------------------------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV 53 (150)
Q Consensus 1 i~~~~~~~~l~~~~~---------------------------d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 53 (150)
+.|+||++.|+.++. ...|.+||+.+++.+..+.. . .+..+.|+|+| .++
T Consensus 109 ~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~ 185 (347)
T 2gop_A 109 LEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVV 185 (347)
T ss_dssp EEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEE
T ss_pred eeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEE
Confidence 369999998888763 25799999998876344444 3 77899999999 777
Q ss_pred eecCCC-------eEEEEEcccccccccccccccccceeEeeecCCCEEEEecCC--------CcEEEEeccCCeeeeec
Q 031924 54 CGSQSG-------TVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSEN--------GLISLVGILPNRIIQPI 118 (150)
Q Consensus 54 ~~~~d~-------~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~~~ 118 (150)
++..++ ...+|.+. .++ ...+.. + ..+... +|+|+.|+..+.+ ..|++|| +++.....
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l~~-~-~~~~~~-spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 186 NVPHREIIPQYFKFWDIYIWE-DGK-EEKMFE-K-VSFYAV-DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp EEECCCSSCCSSCCEEEEEEE-TTE-EEEEEE-E-ESEEEE-EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred EEecccccccccccccEEEeC-CCc-eEEecc-C-cceeeE-CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence 775542 44566554 333 333444 4 344444 8899988776643 3688888 55554444
Q ss_pred cCCCCcceeE-EEEcCCccEEEecccccc
Q 031924 119 AEHSEYPIES-LGIASVLCFINSGFLSLN 146 (150)
Q Consensus 119 ~~~~~~~i~~-~~~~~~~~~l~s~~~~~~ 146 (150)
..+.. .+.. +.|+ |+ ++++++..+.
T Consensus 259 ~~~~~-~~~~~~~~s-dg-~~~~~~~~~~ 284 (347)
T 2gop_A 259 DEVDR-GVGQAKIKD-GK-VYFTLFEEGS 284 (347)
T ss_dssp TTCCS-EEEEEEEET-TE-EEEEEEETTE
T ss_pred ccCCc-ccCCccEEc-Cc-EEEEEecCCc
Confidence 44445 5876 8999 88 8887766543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.2e-11 Score=84.94 Aligned_cols=144 Identities=7% Similarity=-0.039 Sum_probs=96.7
Q ss_pred CeeecCcceEEEEcCCCe----------------EEEEEcCCCee----eeeeccCCCcEEEEEEEeCCCEEEeecC---
Q 031924 1 MTFAADAMKLLGTSGDGT----------------LSVCNLRKNTV----QTRSEFSEEELTSVVLMKNGRKVVCGSQ--- 57 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~--- 57 (150)
++|+||++.|+.++.++. |++|++.+++. +.....+...+..+.|+|||++|+..+.
T Consensus 176 ~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 255 (710)
T 2xdw_A 176 MAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGC 255 (710)
T ss_dssp EEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSS
T ss_pred EEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccC
Confidence 479999999998877655 99999988652 2222234456789999999999887654
Q ss_pred --CCeEEEEEccc------ccccccccccccccceeEeeecCCCEEEEecCC----CcEEEEeccCCe--eeeeccCCCC
Q 031924 58 --SGTVLLYSWGY------FKDCSDRFVGLSPNSVDALLKLDEDRVITGSEN----GLISLVGILPNR--IIQPIAEHSE 123 (150)
Q Consensus 58 --d~~i~i~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~--~~~~~~~~~~ 123 (150)
+..+++||+.. .......+.. +...+....+++|+.|+..+.. +.|.+||+.++. ..+.+..+..
T Consensus 256 ~~~~~l~~~d~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 334 (710)
T 2xdw_A 256 DPVNRLWYCDLQQESNGITGILKWVKLID-NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE 334 (710)
T ss_dssp SSCCEEEEEEGGGSSSSSCSSCCCEEEEC-SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred CCccEEEEEECcccccccCCccceEEeeC-CCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC
Confidence 56899999863 1113445555 5555555557777776655542 369999987653 2233333333
Q ss_pred -cceeEEEEcCCccEEEeccccc
Q 031924 124 -YPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 124 -~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
..+..++|++++.++++...++
T Consensus 335 ~~~~~~~~~~~~~~lv~~~~~~g 357 (710)
T 2xdw_A 335 KDVLEWVACVRSNFLVLCYLHDV 357 (710)
T ss_dssp SCEEEEEEEETTTEEEEEEEETT
T ss_pred CCeEEEEEEEcCCEEEEEEEECC
Confidence 2488899998888888776554
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-10 Score=82.31 Aligned_cols=112 Identities=8% Similarity=-0.005 Sum_probs=83.2
Q ss_pred cCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc-cccccccccccccccc
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG-YFKDCSDRFVGLSPNS 83 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~-~~~~~~~~~~~~~~~~ 83 (150)
|.+.++++...+++|.++|..+++.+..+... ..+..+.++|||+++++++.++.|.+||+. ...+.+.++.. ...+
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCC
Confidence 44556667778999999999999888777643 356799999999999999999999999984 23355556654 3333
Q ss_pred eeEeee----cCCCEEEEecC-CCcEEEEeccCCeeeeec
Q 031924 84 VDALLK----LDEDRVITGSE-NGLISLVGILPNRIIQPI 118 (150)
Q Consensus 84 v~~~~~----~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~ 118 (150)
.....+ |+|+++++++. ++.+.++|..+.+.++.+
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i 282 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 282 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence 322336 69988877765 589999998887766554
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.1e-11 Score=76.69 Aligned_cols=141 Identities=8% Similarity=-0.033 Sum_probs=94.4
Q ss_pred CeeecCcc-eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc--
Q 031924 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-- 77 (150)
Q Consensus 1 i~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-- 77 (150)
++|+|+++ +++++..++.|..||..++ ...+..+...+.+++++++|+.+++...++.|.+||... ++......
T Consensus 33 ~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~ 109 (296)
T 3e5z_A 33 PVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG-GEWESIADSF 109 (296)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT-CCEEEEECEE
T ss_pred CeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC-CcEEEEeecc
Confidence 36899998 7778888999999999877 445555667789999999999888777778999999742 33222111
Q ss_pred -cccccceeEee-ecCCCEEEE----ec-------------CCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEE
Q 031924 78 -GLSPNSVDALL-KLDEDRVIT----GS-------------ENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFI 138 (150)
Q Consensus 78 -~~~~~~v~~~~-~~~~~~l~~----~~-------------~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (150)
......+..+. .++|+++++ ++ ..+.|..++.. ++. ..+..+.. ....++|+|+|+.+
T Consensus 110 ~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~-~~~gi~~s~dg~~l 186 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRV-KPNGLAFLPSGNLL 186 (296)
T ss_dssp TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCS-SEEEEEECTTSCEE
T ss_pred CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCC-CCccEEECCCCCEE
Confidence 10112233454 788988887 33 13456666654 443 33334444 37889999999988
Q ss_pred Eeccccccc
Q 031924 139 NSGFLSLNV 147 (150)
Q Consensus 139 ~s~~~~~~v 147 (150)
++.+....|
T Consensus 187 v~~~~~~~i 195 (296)
T 3e5z_A 187 VSDTGDNAT 195 (296)
T ss_dssp EEETTTTEE
T ss_pred EEeCCCCeE
Confidence 666554443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.2e-12 Score=84.68 Aligned_cols=139 Identities=8% Similarity=-0.124 Sum_probs=88.6
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEE-------------------EEEEeCCCEEEee-----cC
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTS-------------------VVLMKNGRKVVCG-----SQ 57 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~ 57 (150)
.|+||++.|+..+.++.|.+||+.+++.......+...... +.|+|+++.++.. ..
T Consensus 87 ~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 87 FISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNP 166 (396)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred eECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCC
Confidence 58999999999988889999999988655444433332222 2456666655443 35
Q ss_pred CCeEEEEEcccccccccccccccccceeEee-ec-CCCEEEEecCC------CcEEEEeccCCeeeeeccCCCCcceeEE
Q 031924 58 SGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KL-DEDRVITGSEN------GLISLVGILPNRIIQPIAEHSEYPIESL 129 (150)
Q Consensus 58 d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~i~~~ 129 (150)
+..|.+||+.. ++.. .+.. +...+.... +| +++.++..+.+ ..|++||+..++............+..+
T Consensus 167 ~~~l~~~d~~~-g~~~-~~~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 167 TCRLIKVDIET-GELE-VIHQ-DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE 243 (396)
T ss_dssp CEEEEEEETTT-CCEE-EEEE-ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred cceEEEEECCC-CcEE-eecc-CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence 56888999853 3332 2223 455566655 77 67766655433 3688888866544333322113248889
Q ss_pred EEcCCccEEEeccc
Q 031924 130 GIASVLCFINSGFL 143 (150)
Q Consensus 130 ~~~~~~~~l~s~~~ 143 (150)
+|+|||++|+..+.
T Consensus 244 ~~spdg~~l~~~~~ 257 (396)
T 3c5m_A 244 FWIPDGSAMAYVSY 257 (396)
T ss_dssp EECTTSSCEEEEEE
T ss_pred EECCCCCEEEEEec
Confidence 99999998776654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.8e-11 Score=76.49 Aligned_cols=137 Identities=8% Similarity=0.009 Sum_probs=92.1
Q ss_pred CeeecCcceEEEE----c-------------CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEE
Q 031924 1 MTFAADAMKLLGT----S-------------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (150)
Q Consensus 1 i~~~~~~~~l~~~----~-------------~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 63 (150)
++++|+++++++. . ..+.|..++.. ++. ..+.........++|+|+++.+++.+.++.|.+
T Consensus 120 i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~ 197 (296)
T 3e5z_A 120 VCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHR 197 (296)
T ss_dssp EEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEE
Confidence 3678899888863 2 13456666655 443 334445567789999999998877788899999
Q ss_pred EEccccccc---ccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEE-cCCccEE
Q 031924 64 YSWGYFKDC---SDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGI-ASVLCFI 138 (150)
Q Consensus 64 ~~~~~~~~~---~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l 138 (150)
|++...+.. ...+.. +...+..+. .++|+++++. ++.|.+|+.. ++.+..+..+.. +.+++| +|+++.|
T Consensus 198 ~~~~~~g~~~~~~~~~~~-~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L 271 (296)
T 3e5z_A 198 YCLNARGETEYQGVHFTV-EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTL 271 (296)
T ss_dssp EEECSSSCEEEEEEEECC-SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEE
T ss_pred EEECCCCcCcCCCeEeeC-CCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEE
Confidence 998532332 122222 333344555 7788877666 7899999986 666677655543 788999 5888877
Q ss_pred Eeccccc
Q 031924 139 NSGFLSL 145 (150)
Q Consensus 139 ~s~~~~~ 145 (150)
..++..+
T Consensus 272 ~v~t~~~ 278 (296)
T 3e5z_A 272 YMTVSTE 278 (296)
T ss_dssp EEEETTE
T ss_pred EEEcCCe
Confidence 7666543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.1e-12 Score=85.19 Aligned_cols=138 Identities=8% Similarity=-0.081 Sum_probs=88.8
Q ss_pred CeeecCcceEEEEcC---CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
++|+||+++|+.... +..|.+||+.+++..............+.|+|+|++|+..+.++.+++||+.. ++......
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-~~~~~~~~ 119 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLET-LEEQVIYT 119 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTT-CCEEEEEE
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCC-CCcEEEEe
Confidence 368999999877643 34788899988865443332222223378999999999988888999999853 33222222
Q ss_pred cccccceeE-------------------ee-ecCCCEEEEe-----cCCCcEEEEeccCCeeeeeccCCCCcceeEEEEc
Q 031924 78 GLSPNSVDA-------------------LL-KLDEDRVITG-----SENGLISLVGILPNRIIQPIAEHSEYPIESLGIA 132 (150)
Q Consensus 78 ~~~~~~v~~-------------------~~-~~~~~~l~~~-----~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~ 132 (150)
. +...... .. +|+++.++.. ..+..|++||+.+++..... .+.. .+..+.|+
T Consensus 120 ~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~-~~~~~~~s 196 (396)
T 3c5m_A 120 V-DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTA-WLGHPIYR 196 (396)
T ss_dssp C-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESS-CEEEEEEE
T ss_pred c-ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCc-ccccceEC
Confidence 2 2221111 12 4555555443 35568999999887755444 3444 48899999
Q ss_pred C-CccEEEecc
Q 031924 133 S-VLCFINSGF 142 (150)
Q Consensus 133 ~-~~~~l~s~~ 142 (150)
| +++.|+..+
T Consensus 197 p~dg~~l~~~~ 207 (396)
T 3c5m_A 197 PFDDSTVGFCH 207 (396)
T ss_dssp TTEEEEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 9 888766554
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-10 Score=76.06 Aligned_cols=137 Identities=8% Similarity=-0.036 Sum_probs=92.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCC-----CcEEEEEEEeCCCEEEeec--CCCeEEEEEcccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-----EELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCS 73 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~ 73 (150)
|+++++++.+++...++.|.+||.++++....+.... .....+++ . +..++++. .++.|.++|..+ ++..
T Consensus 89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t-~~~~ 165 (328)
T 3dsm_A 89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTET-DKVV 165 (328)
T ss_dssp EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTT-TEEE
T ss_pred EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCC-CeEE
Confidence 4577888554444489999999999998776554322 14556777 4 44454444 488999999863 4555
Q ss_pred cccccccccceeEee-ecCCCEEEEecCC----------CcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 74 DRFVGLSPNSVDALL-KLDEDRVITGSEN----------GLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 74 ~~~~~~~~~~v~~~~-~~~~~~l~~~~~d----------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
.++.. ... ...+. .++|++++++..+ +.|.++|..+++....+....+.....++++|+++.+..+.
T Consensus 166 ~~i~~-g~~-p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 166 DELTI-GIQ-PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp EEEEC-SSC-BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred EEEEc-CCC-ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence 55543 222 23344 7788877777655 78999999988877666433222488999999888766543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-10 Score=72.96 Aligned_cols=143 Identities=8% Similarity=-0.032 Sum_probs=95.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
|+++++++++++.. ++.|.+||................+..++++++|+.+++...++.|.+|+.... ........ .
T Consensus 72 i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~-~ 148 (270)
T 1rwi_B 72 LAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK-TQTVLPFT-G 148 (270)
T ss_dssp EEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC-SCEECCCC-S
T ss_pred eEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc-eeEeeccc-c
Confidence 46788888666665 889999998765433222223356899999999997777777889999975422 11111112 2
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
......+. .++++++++...++.|.+||............+.. .+..++++++|.++++...++.|
T Consensus 149 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~p~~i~~d~~g~l~v~~~~~~~v 215 (270)
T 1rwi_B 149 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT-APWGIAVDEAGTVYVTEHNTNQV 215 (270)
T ss_dssp CCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC-SEEEEEECTTCCEEEEETTTSCE
T ss_pred CCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCC-CceEEEECCCCCEEEEECCCCcE
Confidence 23344555 67888888777788999999876654433323323 48899999999887776555443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5.3e-11 Score=78.35 Aligned_cols=136 Identities=12% Similarity=0.078 Sum_probs=98.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
+.|++++..++..+.++.++.| .++....+..+...+.+++|+++|+.++++..++.|.+||... ++....... +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~-~~~~~~~~~-~ 85 (333)
T 2dg1_A 11 LFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRPFVS-H 85 (333)
T ss_dssp CCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEEC-S
T ss_pred eeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC-CcEEEEeeC-C
Confidence 4678888777777788888988 3445555566666789999999999888888899999999752 333222223 4
Q ss_pred ccceeEee-ecCCCEEEEecCC----CcEEEEeccCCeeeeecc--CCCCcceeEEEEcCCccEEEecc
Q 031924 81 PNSVDALL-KLDEDRVITGSEN----GLISLVGILPNRIIQPIA--EHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
...+..+. .++++++++...+ +.|.+||..+++....+. .+.. .+..++++|+|+++++..
T Consensus 86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~i~~d~~g~l~v~~~ 153 (333)
T 2dg1_A 86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY-CIDDMVFDSKGGFYFTDF 153 (333)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC-CEEEEEECTTSCEEEEEC
T ss_pred CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC-cccceEECCCCCEEEEec
Confidence 56677777 7888888877766 689999987766433332 2223 588999999999887654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.29 E-value=4.3e-10 Score=75.29 Aligned_cols=127 Identities=13% Similarity=0.102 Sum_probs=89.7
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCee--eeeecc------CC----CcEEEEEEEeCCCEEEeecC-----------CCe
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTV--QTRSEF------SE----EELTSVVLMKNGRKVVCGSQ-----------SGT 60 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~------~~----~~v~~~~~~~~~~~l~~~~~-----------d~~ 60 (150)
+|++..++..+.++.+.++|+...+. ...+.. .. .....++++|+++.+++... .+.
T Consensus 208 ~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 208 ALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp EECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSE
T ss_pred cccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCce
Confidence 45566666666788899999875432 111110 00 11112689999888776543 358
Q ss_pred EEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCC--eeeeeccCCCCcceeEEEEcCCcc
Q 031924 61 VLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPN--RIIQPIAEHSEYPIESLGIASVLC 136 (150)
Q Consensus 61 i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~ 136 (150)
|.+||+. ..+.+.++.. +. ...+. +++|+++++++. +.|.+||..++ +.+..+..... ....++++|+|.
T Consensus 288 v~viD~~-t~~~v~~i~~-~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~-~P~~~~~~p~G~ 360 (361)
T 2oiz_A 288 IWVMDTK-TKQRVARIPG-RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAE-ASLQVQFHPVGG 360 (361)
T ss_dssp EEEEETT-TTEEEEEEEC-TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCS-SEEEEEECCCSC
T ss_pred EEEEECC-CCcEEEEEec-CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCC-CcEEEEecCCCC
Confidence 9999986 4477777776 55 66666 999999998887 99999999999 88888755545 478899999985
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.8e-10 Score=82.01 Aligned_cols=141 Identities=10% Similarity=-0.026 Sum_probs=91.0
Q ss_pred CeeecCcceEEEEcCCCe-------------EEEEEcCCCe----eeeeeccCCCcEEEEEEEeCCCEEEeecCCC----
Q 031924 1 MTFAADAMKLLGTSGDGT-------------LSVCNLRKNT----VQTRSEFSEEELTSVVLMKNGRKVVCGSQSG---- 59 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~-------------i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---- 59 (150)
++|+||++.|+.++.+.. |++|++.+++ .+.....+...+..+.|+|||++|+..+.++
T Consensus 173 ~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 252 (695)
T 2bkl_A 173 PKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEN 252 (695)
T ss_dssp CEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEE
T ss_pred eEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCce
Confidence 479999999999887765 9999998875 2333334445788999999999988776555
Q ss_pred eEEEEEcccccccccccccccccceeEeeecCCCEEEEec---CCCcEEEEeccCCee---eeeccCCCCcceeEEEEcC
Q 031924 60 TVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGS---ENGLISLVGILPNRI---IQPIAEHSEYPIESLGIAS 133 (150)
Q Consensus 60 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~ 133 (150)
.+.+++.. ......+.. +.........+++++++... .++.|.+||+.+++. ...+..+....+..++|+
T Consensus 253 ~l~~~~~~--~~~~~~l~~-~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~- 328 (695)
T 2bkl_A 253 DVYWKRPG--EKDFRLLVK-GVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV- 328 (695)
T ss_dssp EEEEECTT--CSSCEEEEE-CSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-
T ss_pred EEEEEcCC--CCceEEeec-CCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-
Confidence 55555532 223344444 44444444446666444443 257899999876542 233333323358888888
Q ss_pred CccEEEeccccc
Q 031924 134 VLCFINSGFLSL 145 (150)
Q Consensus 134 ~~~~l~s~~~~~ 145 (150)
++.++++...++
T Consensus 329 ~~~lv~~~~~dg 340 (695)
T 2bkl_A 329 GGHLSLEYLKDA 340 (695)
T ss_dssp TTEEEEEEEETT
T ss_pred CCEEEEEEEECC
Confidence 667777765443
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.5e-11 Score=86.68 Aligned_cols=135 Identities=7% Similarity=-0.057 Sum_probs=86.2
Q ss_pred eeecCcceEEE-----EcCCCeEEEEEcCCCeee-eeeccCCCcEEEEEEEeCCCEEEeecCCCe-------------EE
Q 031924 2 TFAADAMKLLG-----TSGDGTLSVCNLRKNTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGT-------------VL 62 (150)
Q Consensus 2 ~~~~~~~~l~~-----~~~d~~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------------i~ 62 (150)
+||||+++|+. |+.+.+|++||+.+++.+ ..... ......++|+|||+.|+.++.+.. |+
T Consensus 127 ~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~-~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~ 205 (695)
T 2bkl_A 127 AVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE-GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR 205 (695)
T ss_dssp EECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS-CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred EECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC-cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence 68999999984 344578999999998754 21111 111267899999999998888765 99
Q ss_pred EEEcccccc---cccccccccccceeEee-ecCCCEEEEecCCC----cEEEEeccCCeeeeeccCCCCcceeEEEEcCC
Q 031924 63 LYSWGYFKD---CSDRFVGLSPNSVDALL-KLDEDRVITGSENG----LISLVGILPNRIIQPIAEHSEYPIESLGIASV 134 (150)
Q Consensus 63 i~~~~~~~~---~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 134 (150)
+|++..... .+..... +...+.... +++|++|+..+.++ .|++|+..+++. ..+..+.. .+....+ ++
T Consensus 206 ~~~l~t~~~~~~lv~~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~-~~~~~~~-~~ 281 (695)
T 2bkl_A 206 YHTLGTEPSKDTVVHERTG-DPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVG-AKYEVHA-WK 281 (695)
T ss_dssp EEETTSCGGGCEEEECCCC-CTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSS-CCEEEEE-ET
T ss_pred EEECCCCchhceEEEecCC-CCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCC-ceEEEEe-cC
Confidence 999864321 2222223 334555555 89999888877665 677777654443 33334444 3555555 55
Q ss_pred ccEEEec
Q 031924 135 LCFINSG 141 (150)
Q Consensus 135 ~~~l~s~ 141 (150)
|.+++..
T Consensus 282 g~l~~~s 288 (695)
T 2bkl_A 282 DRFYVLT 288 (695)
T ss_dssp TEEEEEE
T ss_pred CcEEEEE
Confidence 5544443
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-10 Score=73.81 Aligned_cols=139 Identities=8% Similarity=-0.005 Sum_probs=89.8
Q ss_pred CeeecCcceEEEEcCC---------CeEEEEEcCC-CeeeeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEcc-c
Q 031924 1 MTFAADAMKLLGTSGD---------GTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWG-Y 68 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d---------~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~-~ 68 (150)
++++|+++++++.... ..-.+|.+.. ++.. .+.......+.++|+|+++.+ ++.+.++.|.+|++. .
T Consensus 103 i~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~ 181 (297)
T 3g4e_A 103 GKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ 181 (297)
T ss_dssp EEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT
T ss_pred EEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCC
Confidence 3578888876655321 2234444432 3332 223333456899999999876 455667899999873 2
Q ss_pred cccc-----ccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEc-CCccEEEec
Q 031924 69 FKDC-----SDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIA-SVLCFINSG 141 (150)
Q Consensus 69 ~~~~-----~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~ 141 (150)
.+.. ...+.. .......+. .++|++.++....+.|..||..+++.+..+..+.. .+++++|. |+++.|..+
T Consensus 182 ~G~~~~~~~~~~~~~-~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 182 TGQISNRRSVYKLEK-EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp TCCEEEEEEEEECCG-GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEE
T ss_pred CCcccCcEEEEECCC-CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEE
Confidence 2221 122222 234455666 77888888877788999999988888888866655 48999998 887755444
Q ss_pred c
Q 031924 142 F 142 (150)
Q Consensus 142 ~ 142 (150)
+
T Consensus 260 ~ 260 (297)
T 3g4e_A 260 C 260 (297)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.2e-10 Score=72.94 Aligned_cols=133 Identities=5% Similarity=-0.036 Sum_probs=91.5
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc-----
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP----- 81 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~----- 81 (150)
++.+++...++.|.+||.++++.+..+. .......++++++++..++...++.|.+||..+ ++...++.. ..
T Consensus 54 ~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-~~~~~~i~~-g~~~~~~ 130 (328)
T 3dsm_A 54 GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT-YEITGYIEC-PDMDMES 130 (328)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT-TEEEEEEEC-TTCCTTT
T ss_pred CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC-CeEEEEEEc-CCccccC
Confidence 4455566678999999999998877774 345678999999985444444889999999863 354444442 22
Q ss_pred cceeEeeecCCCEEEEec-CCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 82 NSVDALLKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
.....+...+++++++.. .++.|.++|+.+++.+..+... . ....++++|+|++++++...
T Consensus 131 ~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~-~p~~i~~~~dG~l~v~~~~~ 192 (328)
T 3dsm_A 131 GSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-I-QPTSLVMDKYNKMWTITDGG 192 (328)
T ss_dssp CBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-S-CBCCCEECTTSEEEEEBCCB
T ss_pred CCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-C-CccceEEcCCCCEEEEECCC
Confidence 022233333444555544 4889999999999887777543 2 36678999999988776543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.26 E-value=4.2e-10 Score=73.35 Aligned_cols=139 Identities=8% Similarity=0.033 Sum_probs=92.0
Q ss_pred CeeecCcceEEEEcCC---------------CeEEEEEcCCCeeeeeeccCCCcEEEEEEE----eCCCEEEee-cCCCe
Q 031924 1 MTFAADAMKLLGTSGD---------------GTLSVCNLRKNTVQTRSEFSEEELTSVVLM----KNGRKVVCG-SQSGT 60 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d---------------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~d~~ 60 (150)
++++++++++++...+ +.|..||.. ++.... .........++++ ++++.++.+ ..++.
T Consensus 122 i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~ 199 (314)
T 1pjx_A 122 CAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKK 199 (314)
T ss_dssp EEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTE
T ss_pred EEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCe
Confidence 3577888877777554 567777765 544332 2233456889999 998766544 56789
Q ss_pred EEEEEcccccc-----cccccccccc-cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC
Q 031924 61 VLLYSWGYFKD-----CSDRFVGLSP-NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS 133 (150)
Q Consensus 61 i~i~~~~~~~~-----~~~~~~~~~~-~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~ 133 (150)
|.+|+....++ ....+.. +. .....+. .++|+++++...++.|..||..+++.+..+..+.. .+.+++|+|
T Consensus 200 i~~~~~~~~g~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~ 277 (314)
T 1pjx_A 200 LWSYDIKGPAKIENKKVWGHIPG-THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKP 277 (314)
T ss_dssp EEEEEEEETTEEEEEEEEEECCC-CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS-CEEEEEECT
T ss_pred EEEEECCCCCccccceEEEECCC-CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCC-CceeEEECC
Confidence 99999752222 1222332 22 3455565 77888888877888999999986766666655545 489999999
Q ss_pred CccE-EEeccc
Q 031924 134 VLCF-INSGFL 143 (150)
Q Consensus 134 ~~~~-l~s~~~ 143 (150)
+++. +++...
T Consensus 278 dg~~l~v~~~~ 288 (314)
T 1pjx_A 278 QTKTIFVTEHE 288 (314)
T ss_dssp TSSEEEEEETT
T ss_pred CCCEEEEEeCC
Confidence 9984 444433
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.24 E-value=4.1e-10 Score=75.35 Aligned_cols=111 Identities=11% Similarity=0.123 Sum_probs=80.6
Q ss_pred cCcceEEEEc------CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec----------CCCeEEEEEccc
Q 031924 5 ADAMKLLGTS------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWGY 68 (150)
Q Consensus 5 ~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~i~~~~~ 68 (150)
++++++++.. .|+.|.+||..+++.+..+.....+ .++|+|+|+++++++ .++.|.+||...
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 3667777653 3679999999999887777655444 899999999998876 367899999853
Q ss_pred ccccccccccccc------cceeEee-ecCCCEEEEecC--CCcEEEEeccCCeeeee-cc
Q 031924 69 FKDCSDRFVGLSP------NSVDALL-KLDEDRVITGSE--NGLISLVGILPNRIIQP-IA 119 (150)
Q Consensus 69 ~~~~~~~~~~~~~------~~v~~~~-~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~-~~ 119 (150)
.+...++.. .. .....+. +++|++++++.. ++.|.+||+.+++.+.. +.
T Consensus 91 -~~~~~~i~~-~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 91 -LTFEKEISL-PPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp -CCEEEEEEE-CTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred -CcEEEEEEc-CccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence 355555442 11 1222333 899999988764 57999999999988777 53
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-09 Score=68.20 Aligned_cols=139 Identities=7% Similarity=-0.004 Sum_probs=94.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee-eeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccc-cccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-RFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~-~~~~ 78 (150)
|+++++++++++...++.|..||.. ++.. .........+.++++.++|+..++...++.+..||.. ++... ....
T Consensus 62 i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~--g~~~~~~~~~ 138 (299)
T 2z2n_A 62 LTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD--GKIREYELPN 138 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEEEECSS
T ss_pred EEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC--CCEEEecCCC
Confidence 3567888888887778899999986 4332 2222244578999999999888877778899999872 22221 1222
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeee-ccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
....+..+. .++++++++...++.|..||. +++.... ...... .+..++++++|++.++....+
T Consensus 139 -~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~~~~ 204 (299)
T 2z2n_A 139 -KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPAS-GPVGITKGNDDALWFVEIIGN 204 (299)
T ss_dssp -TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTC-CEEEEEECTTSSEEEEETTTT
T ss_pred -CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCC-cceeEEECCCCCEEEEccCCc
Confidence 234456666 778888887777889999998 6654432 222333 488999999998777654433
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-10 Score=75.82 Aligned_cols=125 Identities=10% Similarity=0.056 Sum_probs=85.0
Q ss_pred CcceEEEEc---------CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC---Ce--EEEEEcccccc
Q 031924 6 DAMKLLGTS---------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS---GT--VLLYSWGYFKD 71 (150)
Q Consensus 6 ~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~--i~i~~~~~~~~ 71 (150)
||+.++... .++.|.+||+.+++... + ..+..+.|+|||++|+..+.+ +. |.+|++. .++
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~-~g~ 96 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLE-TLS 96 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETT-TTE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECC-CCc
Confidence 677776542 25689999998876432 3 457889999999998877643 34 6666764 233
Q ss_pred cccccccccccceeEee-ecCCCEEEEecCC---------------------------CcEEEEeccCCeeeeeccCCCC
Q 031924 72 CSDRFVGLSPNSVDALL-KLDEDRVITGSEN---------------------------GLISLVGILPNRIIQPIAEHSE 123 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~d---------------------------g~i~~~d~~~~~~~~~~~~~~~ 123 (150)
... +.. ... +..+. +|+++.|+..+.+ ..|++||+.+++.+..+.. .
T Consensus 97 ~~~-l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~- 171 (347)
T 2gop_A 97 SKK-ILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P- 171 (347)
T ss_dssp EEE-EEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-
T ss_pred eEE-EEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-
Confidence 333 333 333 66666 8899988877632 5788999988876444433 2
Q ss_pred cceeEEEEcCCccEEEeccc
Q 031924 124 YPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 124 ~~i~~~~~~~~~~~l~s~~~ 143 (150)
.+..++|+||| +++++..
T Consensus 172 -~~~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 172 -RFSSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp -TTCEEEEETTE-EEEEEEC
T ss_pred -CcccccCCCCe-EEEEEec
Confidence 48889999999 7776644
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.7e-09 Score=67.32 Aligned_cols=138 Identities=6% Similarity=-0.042 Sum_probs=94.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeee-eccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc-ccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTR-SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR-FVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-~~~ 78 (150)
|+++|+++++++...++.|..||. +++.... .......+..+++.++|+..++...++.+..||. . ++.... ...
T Consensus 104 i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~~~~~~~~~ 180 (299)
T 2z2n_A 104 ITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S-GDITEFKIPT 180 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCEEEEECSS
T ss_pred eEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C-CcEEEeeCCC
Confidence 356788888887777889999998 5544322 2233457899999999987777777789999987 2 332221 222
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeee-ccCCCCcceeEEEEcCCccEEEecccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
....+..+. .++++++++...++.|..||. +++.... ...+.. .+..++++++|++.++...+
T Consensus 181 -~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~~~ 245 (299)
T 2z2n_A 181 -PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNA-RPHAITAGAGIDLWFTEWGA 245 (299)
T ss_dssp -TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTC-CEEEEEECSTTCEEEEETTT
T ss_pred -CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCC-CceeEEECCCCCEEEeccCC
Confidence 334455666 678888777777889999998 6654332 222334 48899999999977765333
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.8e-10 Score=82.59 Aligned_cols=137 Identities=10% Similarity=0.017 Sum_probs=86.3
Q ss_pred eeecCcceEEEEcCC-----CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCe--------------EE
Q 031924 2 TFAADAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT--------------VL 62 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------------i~ 62 (150)
+||||+++|+.++.+ ..|++||+.+++.+... .+...+..++|+|| +.|+.+..++. |+
T Consensus 169 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~ 246 (741)
T 1yr2_A 169 AASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVW 246 (741)
T ss_dssp EECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEE
T ss_pred EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEE
Confidence 699999999876533 46999999998765431 11112357899999 88887776543 88
Q ss_pred EEEcccccc---cccccccccccceeEee-ecCCCEEEEecCCC-----cEEEEeccCC--eeeeeccCCCCcceeEEEE
Q 031924 63 LYSWGYFKD---CSDRFVGLSPNSVDALL-KLDEDRVITGSENG-----LISLVGILPN--RIIQPIAEHSEYPIESLGI 131 (150)
Q Consensus 63 i~~~~~~~~---~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg-----~i~~~d~~~~--~~~~~~~~~~~~~i~~~~~ 131 (150)
+|++.+... .+..... ++..+.... +++|++|+..+.++ .|++||+.++ +....+..+.. ..... +
T Consensus 247 ~~~lgt~~~~~~lv~~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~~~-~ 323 (741)
T 1yr2_A 247 LHRLGTPQSADQPVFATPE-LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK-AQWDF-V 323 (741)
T ss_dssp EEETTSCGGGCEEEECCTT-CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS-SCEEE-E
T ss_pred EEECCCCchhCEEEeccCC-CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC-ceEEE-E
Confidence 888753321 1111122 223355555 89999888776543 8999999776 31344444444 24444 3
Q ss_pred cCCccEEEeccc
Q 031924 132 ASVLCFINSGFL 143 (150)
Q Consensus 132 ~~~~~~l~s~~~ 143 (150)
+|+|+.|+..+.
T Consensus 324 ~~dg~~l~~~s~ 335 (741)
T 1yr2_A 324 DGVGDQLWFVSG 335 (741)
T ss_dssp EEETTEEEEEEC
T ss_pred eccCCEEEEEEC
Confidence 488877665543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.16 E-value=6e-09 Score=75.71 Aligned_cols=141 Identities=16% Similarity=0.036 Sum_probs=89.6
Q ss_pred CeeecCcceEEEEcCCCe--------------EEEEEcCCCee----eeeeccCCCcEEEEEEEeCCCEEEeecCC----
Q 031924 1 MTFAADAMKLLGTSGDGT--------------LSVCNLRKNTV----QTRSEFSEEELTSVVLMKNGRKVVCGSQS---- 58 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~--------------i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 58 (150)
++|+|| +.|+.++.++. |.+|++.++.. +.....+...+..+.|+|||++|+..+.+
T Consensus 214 ~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 292 (741)
T 1yr2_A 214 LAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDP 292 (741)
T ss_dssp CEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCS
T ss_pred EEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCC
Confidence 479999 88888776543 88999877642 22222233358899999999998876644
Q ss_pred -CeEEEEEccccccc-ccccccccccceeEeeecCCCEEEEecC----CCcEEEEeccCC--eeeeeccCCCCcceeEEE
Q 031924 59 -GTVLLYSWGYFKDC-SDRFVGLSPNSVDALLKLDEDRVITGSE----NGLISLVGILPN--RIIQPIAEHSEYPIESLG 130 (150)
Q Consensus 59 -~~i~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~~~~~----dg~i~~~d~~~~--~~~~~~~~~~~~~i~~~~ 130 (150)
..+++||+...... ...+.. +.........++++.|+..+. ++.|.+||+.+. +....+..+.. .+..+.
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~ 370 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIP-DLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD-NLESVG 370 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEEC-SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS-EEEEEE
T ss_pred cceEEEEECCCCCCcccEEecC-CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC-eEEEEE
Confidence 38999998532112 444544 444444444678887777664 345999998764 33344444444 477777
Q ss_pred EcCCccEEEeccccc
Q 031924 131 IASVLCFINSGFLSL 145 (150)
Q Consensus 131 ~~~~~~~l~s~~~~~ 145 (150)
++ ++.++++...++
T Consensus 371 ~~-~~~lv~~~~~dg 384 (741)
T 1yr2_A 371 IA-GNRLFASYIHDA 384 (741)
T ss_dssp EE-BTEEEEEEEETT
T ss_pred EE-CCEEEEEEEECC
Confidence 77 556666655443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.2e-09 Score=71.68 Aligned_cols=143 Identities=14% Similarity=0.015 Sum_probs=90.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCC--eEEEEEccccccccccc--
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRF-- 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~-- 76 (150)
|+|+++++++++...++.|++||..+++....... ..... ++|+++++.|++++.++ .|.+++.... .....+
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~-~~~~~~g~ 212 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG-WAPTRIGQ 212 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT-TCEEEEEE
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC-ceeEEeee
Confidence 47889999777777889999999998766544433 23334 99999999998888765 7888886422 222222
Q ss_pred --ccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeee----ccCCCCc-ceeEEEEcC-CccEEEeccccccc
Q 031924 77 --VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQP----IAEHSEY-PIESLGIAS-VLCFINSGFLSLNV 147 (150)
Q Consensus 77 --~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~----~~~~~~~-~i~~~~~~~-~~~~l~s~~~~~~v 147 (150)
.. .......+. .+++..|+.+..++.|+.||..++..... ...+... |...++|+| ++.++++-.....|
T Consensus 213 ~~~~-~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I 291 (409)
T 3hrp_A 213 LGST-FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSV 291 (409)
T ss_dssp CCTT-SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEE
T ss_pred ccch-hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEE
Confidence 11 123344455 66444555567788999999976653221 1122221 123899999 57777665544433
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-11 Score=82.78 Aligned_cols=134 Identities=10% Similarity=0.109 Sum_probs=69.6
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc-cce
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-NSV 84 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~-~~v 84 (150)
++..+++++.|+.|..||.++|+.+.+... +.+.+..+..++..+++++.|+.++.||.. .++...++.. +. ..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~-tG~~~w~~~~-~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK-NNEGLTKLPF-TIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSC-CHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECC-CCceeeeeec-cCcccc
Confidence 577889999999999999999998877665 444455556677778888899999999985 3444433332 21 111
Q ss_pred eE-eeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 85 DA-LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 85 ~~-~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+ .....+..+++++.++.++.||..+++.+..+..+.. ..++|++..+++++.++.|.
T Consensus 84 ~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-----~~~~p~~~~v~~~~~dg~v~ 143 (369)
T 2hz6_A 84 QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-----DSLSPSTSLLYLGRTEYTIT 143 (369)
T ss_dssp TTCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEE
T ss_pred ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc-----ccccccCCEEEEEecCCEEE
Confidence 11 0111355777888899999999999998877754421 34556777777777666554
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.1e-08 Score=63.86 Aligned_cols=138 Identities=8% Similarity=0.015 Sum_probs=94.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeee-eeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccc-ccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS-DRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~-~~~~~ 78 (150)
|+++++++..++...++.|.+||.. ++... .+......+.++++.++++..++...++.|..||.. ++.. .....
T Consensus 25 i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~--g~~~~~~~~~ 101 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK--GGFTEYPLPQ 101 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEECSS
T ss_pred eeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC--CCeEEecCCC
Confidence 3567888888877788999999988 65443 222334578999999999877777778899999875 3322 11222
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeee-eccCCCCcceeEEEEcCCccEEEecccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
....+..+. .++++++++...++.|..+|.. ++... .+..... .+..++++++|++.++....
T Consensus 102 -~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~-~~~~i~~d~~g~l~v~~~~~ 166 (300)
T 2qc5_A 102 -PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS-YPAFITLGSDNALWFTENQN 166 (300)
T ss_dssp -TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTC-CEEEEEECTTSSEEEEETTT
T ss_pred -CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCC-CceeEEECCCCCEEEEecCC
Confidence 234456666 6788888887778899999987 55432 2222233 48899999999977665433
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.12 E-value=5.3e-09 Score=70.41 Aligned_cols=137 Identities=10% Similarity=-0.052 Sum_probs=95.6
Q ss_pred eecCcceEEEEcC-----CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec----------CCCeEEEEEcc
Q 031924 3 FAADAMKLLGTSG-----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWG 67 (150)
Q Consensus 3 ~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~i~~~~ 67 (150)
..|+++.+++... ++.|.++|..+++.+..+..-..+ . ++++|||+++++++ .++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 3578888888764 689999999999988877754445 4 99999999987765 35789999986
Q ss_pred cccccccccccccc--------cceeEeeecCCCEEEEecC--CCcEEEEeccCCeeeeeccCCCC---cce---eEEEE
Q 031924 68 YFKDCSDRFVGLSP--------NSVDALLKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSE---YPI---ESLGI 131 (150)
Q Consensus 68 ~~~~~~~~~~~~~~--------~~v~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~---~~i---~~~~~ 131 (150)
+ .+...++.. .. .+-....+++|++++.+.. ++.|.++|+.+++.+..+..... +|. .-++.
T Consensus 118 t-~~v~~~I~v-~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~ 195 (386)
T 3sjl_D 118 T-LLPTADIEL-PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH 195 (386)
T ss_dssp T-CCEEEEEEE-TTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred C-CeEEEEEEC-CCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEE
Confidence 4 355555432 11 2222333899998887763 68999999999998887743211 111 12477
Q ss_pred cCCccEEEeccc
Q 031924 132 ASVLCFINSGFL 143 (150)
Q Consensus 132 ~~~~~~l~s~~~ 143 (150)
++||+++.....
T Consensus 196 ~~DG~~~~v~~~ 207 (386)
T 3sjl_D 196 CRDGSLAKVAFG 207 (386)
T ss_dssp ETTSCEEEEECC
T ss_pred CCCCCEEEEECC
Confidence 788887665543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.12 E-value=3e-08 Score=63.95 Aligned_cols=137 Identities=5% Similarity=-0.051 Sum_probs=92.8
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeee-eeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccc-cccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS-DRFVGL 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~-~~~~~~ 79 (150)
++++++++.++...++.|..||.. ++... ........+.++++.++|+..++...++.|..|+.. ++.. ..+..
T Consensus 68 ~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~- 143 (300)
T 2qc5_A 68 IVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD--GTIYEYDLPN- 143 (300)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT--SCEEEEECSS-
T ss_pred EECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC--CCEEEccCCC-
Confidence 567788877777778899999988 55432 222234578999999999888877778899999874 3322 12222
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeee-ccCCCCcceeEEEEcCCccEEEecccc
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
....+..+. .++++++++...++.|..+|. +++.... ...+.. .+..++++++|++.++....
T Consensus 144 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~-~~~~i~~d~~g~l~v~~~~~ 208 (300)
T 2qc5_A 144 KGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAA-APVGITSGNDGALWFVEIMG 208 (300)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTC-CEEEEEECTTSSEEEEETTT
T ss_pred CCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCC-CcceEEECCCCCEEEEccCC
Confidence 234456666 678887777777889999998 5554332 222223 48899999999877765433
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.8e-08 Score=67.01 Aligned_cols=143 Identities=8% Similarity=-0.009 Sum_probs=93.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeee----eccCCCc--EEEEEEEeC-CCEEEeecCCCeEEEEEcccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTR----SEFSEEE--LTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCS 73 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~~--v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~ 73 (150)
++++|++..|+.+..++.|..||..++..... ..+.... ...++|+|+ +..+++-..++.|+.|+... . .
T Consensus 224 iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g--~-~ 300 (409)
T 3hrp_A 224 VALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG--E-C 300 (409)
T ss_dssp CEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC--C-E
T ss_pred EEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC--C-E
Confidence 46788555555577788999999987753322 1222222 139999995 56566666788999998742 2 2
Q ss_pred cccccccc---------------cceeEee-ecCCCEEEEec-CCCcEEEEeccCCeeeeeccCC---------------
Q 031924 74 DRFVGLSP---------------NSVDALL-KLDEDRVITGS-ENGLISLVGILPNRIIQPIAEH--------------- 121 (150)
Q Consensus 74 ~~~~~~~~---------------~~v~~~~-~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~--------------- 121 (150)
..+.+ +. .....++ .++|+++++-+ .++.|+.|++.++...... .+
T Consensus 301 ~~~~g-~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~-g~~~~~g~~~g~~~~~~ 378 (409)
T 3hrp_A 301 EWFCG-SATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA-GQVDVASQIDGTPLEAT 378 (409)
T ss_dssp EEEEE-CTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE-ECTTCBSCCCBSTTTCC
T ss_pred EEEEe-CCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe-CCCCCCCcCCCChhceE
Confidence 22222 11 2244555 78889888888 8899999997676643322 22
Q ss_pred CCcceeEEEEcCCccEEEeccccccccC
Q 031924 122 SEYPIESLGIASVLCFINSGFLSLNVNP 149 (150)
Q Consensus 122 ~~~~i~~~~~~~~~~~l~s~~~~~~v~~ 149 (150)
-. ....++++++|.++++-..+..|..
T Consensus 379 ~~-~P~giavd~~g~lyVad~~n~~Ir~ 405 (409)
T 3hrp_A 379 FN-YPYDICYDGEGGYWIAEAWGKAIRK 405 (409)
T ss_dssp BS-SEEEEEECSSSEEEEEESTTCEEEE
T ss_pred eC-CceEEEEcCCCCEEEEECCCCeEEE
Confidence 12 3788999999999888777766643
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-08 Score=71.25 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=54.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcC--CCeeeeeeccCCCcEEEEEEE----eCCCEEEeecC-CCeEEEEEccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLM----KNGRKVVCGSQ-SGTVLLYSWGY 68 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-d~~i~i~~~~~ 68 (150)
+.|+||++++++++.++.|.+||+. +++.+..+... .....++|+ |+|+++++++. ++++.++|..+
T Consensus 202 v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 202 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred eEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 4689999999999999999999995 77777666543 346899999 69999887764 58999999653
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-08 Score=65.47 Aligned_cols=135 Identities=9% Similarity=0.007 Sum_probs=85.7
Q ss_pred eeecCcceEEEEcC------CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEe-ecCCCeEEEEEcc-ccc-cc
Q 031924 2 TFAADAMKLLGTSG------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWG-YFK-DC 72 (150)
Q Consensus 2 ~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~~~~-~~~-~~ 72 (150)
+++|+++++++... .+.|..++ +++... +.........++|+|+++.++. .+.++.|.+|++. ..+ ..
T Consensus 140 ~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~ 216 (326)
T 2ghs_A 140 RMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT 216 (326)
T ss_dssp EECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS
T ss_pred EECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcc
Confidence 57888887665542 24566666 454332 2222345678999999987654 4567899999974 122 21
Q ss_pred -----ccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEc-CCccEEEecc
Q 031924 73 -----SDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIA-SVLCFINSGF 142 (150)
Q Consensus 73 -----~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~ 142 (150)
...+.. .......+. .++|++.++...++.|..||. +++.+..+..+.. .+.+++|+ +++..|..++
T Consensus 217 ~~~~~~~~~~~-~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 217 GKAEVFIDSTG-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp SCCEEEEECTT-SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEE
T ss_pred cCceEEEECCC-CCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEe
Confidence 111222 223344555 678887777766789999998 5666666655544 48999998 8877654433
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.8e-08 Score=63.84 Aligned_cols=141 Identities=6% Similarity=-0.011 Sum_probs=87.6
Q ss_pred eeecCcceE-EEEc---CCCeEEEEEcCCCeeeeeeccC-----------------------------CCcEEEEEEEeC
Q 031924 2 TFAADAMKL-LGTS---GDGTLSVCNLRKNTVQTRSEFS-----------------------------EEELTSVVLMKN 48 (150)
Q Consensus 2 ~~~~~~~~l-~~~~---~d~~i~i~d~~~~~~~~~~~~~-----------------------------~~~v~~~~~~~~ 48 (150)
+++|++..+ ++-. .++.|.+||+.+++....+..| ...+..++|+|+
T Consensus 126 ~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~d 205 (343)
T 2qe8_A 126 AVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAE 205 (343)
T ss_dssp EEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTT
T ss_pred EEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccC
Confidence 567654444 4444 5789999999887655444321 023588999999
Q ss_pred CCEEEeecCCC-eEEEEEcccc-------ccccccc--ccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeee
Q 031924 49 GRKVVCGSQSG-TVLLYSWGYF-------KDCSDRF--VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQP 117 (150)
Q Consensus 49 ~~~l~~~~~d~-~i~i~~~~~~-------~~~~~~~--~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 117 (150)
|+.|+.+..++ .+..++.... .+....+ .+ +......++ .++|+++++...++.|..||..+++....
T Consensus 206 g~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g-~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~ 284 (343)
T 2qe8_A 206 NEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS-EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLL 284 (343)
T ss_dssp SCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE-ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc-cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEE
Confidence 99888776655 5555553210 0111111 12 222233444 67889999988999999999855654322
Q ss_pred ccC-CCCcceeEEEEcCCccEEEecccc
Q 031924 118 IAE-HSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 118 ~~~-~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
... +.. .+..++|.++++++++.+..
T Consensus 285 ~~~~~~~-~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 285 VTDEKLS-WTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp EECGGGS-CEEEEEECTTSCEEEEECCG
T ss_pred EECCcee-cCCeeEECCCCcEEEEeCcc
Confidence 221 123 38899999999988876644
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-07 Score=63.37 Aligned_cols=109 Identities=9% Similarity=-0.080 Sum_probs=77.1
Q ss_pred CeeecCcceEEEEc----------CCCeEEEEEcCCCeeeeeeccC-------CCcEEEEEEEeCCCEEEeecC--CCeE
Q 031924 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFS-------EEELTSVVLMKNGRKVVCGSQ--SGTV 61 (150)
Q Consensus 1 i~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i 61 (150)
++++||+++++.+. .++.|.+||..+.+.+..+... ......+.++|||++|+++.. ++.|
T Consensus 71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v 150 (373)
T 2mad_H 71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV 150 (373)
T ss_pred eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeE
Confidence 57899999999885 3678999999988776655422 123458999999999998874 5789
Q ss_pred EEEEcccccccccc-cccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeee
Q 031924 62 LLYSWGYFKDCSDR-FVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115 (150)
Q Consensus 62 ~i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 115 (150)
.++| . .++...+ +.. +..+ .+.....+.+++.+.||.+.++|. +++..
T Consensus 151 ~viD-~-t~~~~~~~i~~--~~~~-~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~ 199 (373)
T 2mad_H 151 GLVV-Q-GGSSDDQLLSS--PTCY-HIHPGAPSTFYLLCAQGGLAKTDH-AGGAA 199 (373)
T ss_pred EEEE-C-CCCEEeEEcCC--CceE-EEEeCCCceEEEEcCCCCEEEEEC-CCcEE
Confidence 9999 6 4455555 543 2221 122223356677788999999999 77655
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.96 E-value=5.9e-08 Score=63.32 Aligned_cols=134 Identities=10% Similarity=-0.060 Sum_probs=86.2
Q ss_pred eeecCcc-eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc---c
Q 031924 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---V 77 (150)
Q Consensus 2 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~---~ 77 (150)
.|+|+++ ++++...++.|..|+. +++. ..+......+..++++++|+.+++...++.|.+|+.. ++..... .
T Consensus 51 ~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~--g~~~~~~~~~~ 126 (305)
T 3dr2_A 51 AWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD--GQAHLLVGRYA 126 (305)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEECEET
T ss_pred eEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC--CCEEEEEeccC
Confidence 6899988 5666667899999998 4543 3334455678999999999977766666889999864 3321111 1
Q ss_pred cccccceeEee-ecCCCEEEE----ecC-------------CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEE
Q 031924 78 GLSPNSVDALL-KLDEDRVIT----GSE-------------NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~----~~~-------------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (150)
+.....+..+. .++|+++++ |.. .+.|+.+|..+++..... ... ....++|+||++.|.
T Consensus 127 ~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~-~p~gl~~spdg~~ly 203 (305)
T 3dr2_A 127 GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD-HPNGLAFSPDEQTLY 203 (305)
T ss_dssp TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES-SEEEEEECTTSSEEE
T ss_pred CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC-CCcceEEcCCCCEEE
Confidence 10112234454 778888876 332 246777787666543332 223 367899999998665
Q ss_pred ecc
Q 031924 140 SGF 142 (150)
Q Consensus 140 s~~ 142 (150)
.+.
T Consensus 204 v~~ 206 (305)
T 3dr2_A 204 VSQ 206 (305)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.92 E-value=8.3e-08 Score=62.43 Aligned_cols=133 Identities=9% Similarity=-0.011 Sum_probs=83.6
Q ss_pred CeeecCcceEEE-------EcCCCeEEEEEcCCCeeeeeec----cCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccc
Q 031924 1 MTFAADAMKLLG-------TSGDGTLSVCNLRKNTVQTRSE----FSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGY 68 (150)
Q Consensus 1 i~~~~~~~~l~~-------~~~d~~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~ 68 (150)
++|+++++++++ ...++.|..||..+++...... ++...+.+++++++ |+.+++. ..+.|.+||..
T Consensus 23 ~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~- 100 (314)
T 1pjx_A 23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD- 100 (314)
T ss_dssp EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-
T ss_pred ceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-
Confidence 368888887777 5678899999988876543222 13456889999999 6655544 44478889975
Q ss_pred ccccccc-cc---cccccceeEee-ecCCCEEEEecCC---------------CcEEEEeccCCeeeeeccCCCCcceeE
Q 031924 69 FKDCSDR-FV---GLSPNSVDALL-KLDEDRVITGSEN---------------GLISLVGILPNRIIQPIAEHSEYPIES 128 (150)
Q Consensus 69 ~~~~~~~-~~---~~~~~~v~~~~-~~~~~~l~~~~~d---------------g~i~~~d~~~~~~~~~~~~~~~~~i~~ 128 (150)
++.... .. ......+..+. .++++++++...+ +.|..++.. ++..... .+.. ....
T Consensus 101 -g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~-~~~~ 176 (314)
T 1pjx_A 101 -GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQ-FPNG 176 (314)
T ss_dssp -SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEES-SEEE
T ss_pred -CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCC-Ccce
Confidence 333222 11 10123355666 7788888777655 567777765 4443322 2223 3678
Q ss_pred EEEc----CCccEEE
Q 031924 129 LGIA----SVLCFIN 139 (150)
Q Consensus 129 ~~~~----~~~~~l~ 139 (150)
++++ |+++.+.
T Consensus 177 i~~~~~~d~dg~~l~ 191 (314)
T 1pjx_A 177 IAVRHMNDGRPYQLI 191 (314)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEecccCCCCCEEE
Confidence 8999 9996543
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-08 Score=67.72 Aligned_cols=110 Identities=11% Similarity=0.023 Sum_probs=79.3
Q ss_pred CeeecCcceEEEEc----------CCCeEEEEEcCCCeeeeeeccCC-------CcEEEEEEEeCCCEEEeecC--CCeE
Q 031924 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFSE-------EELTSVVLMKNGRKVVCGSQ--SGTV 61 (150)
Q Consensus 1 i~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--d~~i 61 (150)
++++||++++++++ .++.|.+||..+.+.+..+.-.. .....+.++|||++++++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 47899999888875 36789999999998877664321 24567899999999988764 6899
Q ss_pred EEEEcccccccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccC-Cee
Q 031924 62 LLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILP-NRI 114 (150)
Q Consensus 62 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~ 114 (150)
.++|+.+ .+.+.++.. . . ...+.....+.+++.+.||.+.+.++.+ ++.
T Consensus 163 sVID~~t-~~vv~tI~v-~-g-~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 163 GVVDLEG-KAFKRMLDV-P-D-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp EEEETTT-TEEEEEEEC-C-S-EEEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred EEEECCC-CcEEEEEEC-C-C-cceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 9999864 466666653 2 1 1222233456777888899988888875 554
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.5e-08 Score=66.85 Aligned_cols=136 Identities=10% Similarity=-0.059 Sum_probs=92.1
Q ss_pred cCcceEEEEcC-C----CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec----------CCCeEEEEEcccc
Q 031924 5 ADAMKLLGTSG-D----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWGYF 69 (150)
Q Consensus 5 ~~~~~l~~~~~-d----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~i~~~~~~ 69 (150)
|+++.+++... + +.|.++|..+++.+..+..-..+ .+.++|||++++++. .++.|.++|..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t- 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT- 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-
Confidence 35666666544 3 69999999999988887755555 899999999988776 367899999864
Q ss_pred ccccccccccc--------ccceeEeeecCCCEEEEecC--CCcEEEEeccCCeeeeeccCCCCc------ceeEEEEcC
Q 031924 70 KDCSDRFVGLS--------PNSVDALLKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEY------PIESLGIAS 133 (150)
Q Consensus 70 ~~~~~~~~~~~--------~~~v~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~------~i~~~~~~~ 133 (150)
.+...++.. . ..+-....+++|++++.+.. ++.|.++|+.+++.+..+...... .-.-+.+++
T Consensus 159 ~~vv~~I~v-~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~ 237 (426)
T 3c75_H 159 FLPIADIEL-PDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCR 237 (426)
T ss_dssp CCEEEEEEE-TTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET
T ss_pred CcEEEEEEC-CCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcC
Confidence 355555432 1 11112233889998888764 578999999999888777532110 112256778
Q ss_pred CccEEEecccc
Q 031924 134 VLCFINSGFLS 144 (150)
Q Consensus 134 ~~~~l~s~~~~ 144 (150)
+|+++.....+
T Consensus 238 dG~~~~V~~~~ 248 (426)
T 3c75_H 238 DGSLARVDFAD 248 (426)
T ss_dssp TSSEEEEECCT
T ss_pred CCCEEEEECCC
Confidence 88766544433
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.5e-08 Score=63.12 Aligned_cols=136 Identities=6% Similarity=-0.004 Sum_probs=83.5
Q ss_pred CeeecCcceEEE----EcC-------------CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC-----
Q 031924 1 MTFAADAMKLLG----TSG-------------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----- 58 (150)
Q Consensus 1 i~~~~~~~~l~~----~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 58 (150)
++++|++++.++ +.. .+.|..+|..+++..... .......++|+|+++.|+.+...
T Consensus 136 i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~ 213 (305)
T 3dr2_A 136 LIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHG 213 (305)
T ss_dssp EEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---C
T ss_pred EEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCC
Confidence 357788887775 321 356777887666544332 33456889999999988777654
Q ss_pred -CeEEEEEccccc-ccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCc
Q 031924 59 -GTVLLYSWGYFK-DCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVL 135 (150)
Q Consensus 59 -~~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (150)
+.|.+|++...+ .....+..........+. .++|++.++ ..+ .|.+|+. .++.+..+..+. .+..++|+|++
T Consensus 214 ~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~ 288 (305)
T 3dr2_A 214 SVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQ 288 (305)
T ss_dssp CCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TSCEEEEEECSS--CCCEEEECTTS
T ss_pred CCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CCCEEEEEECCC--ceeEEEEeCCC
Confidence 789999975322 000111110112223344 677875544 444 4999998 466666664443 38889999998
Q ss_pred cEEEeccc
Q 031924 136 CFINSGFL 143 (150)
Q Consensus 136 ~~l~s~~~ 143 (150)
+.|..++.
T Consensus 289 ~~L~it~~ 296 (305)
T 3dr2_A 289 QRLFITGG 296 (305)
T ss_dssp CEEEEEET
T ss_pred CEEEEEcC
Confidence 76665544
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.9e-07 Score=61.33 Aligned_cols=111 Identities=8% Similarity=-0.117 Sum_probs=78.8
Q ss_pred ecCcceEEEEcC--CC---eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec----------CCCeEEEEEccc
Q 031924 4 AADAMKLLGTSG--DG---TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWGY 68 (150)
Q Consensus 4 ~~~~~~l~~~~~--d~---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~i~~~~~ 68 (150)
.|+++++++... .. +|.+||..+++.+..+.....+ .++++|||++++++. .++.+.+||...
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 367777777754 33 8899999999887776654443 999999999998875 367899999853
Q ss_pred cccccccccccc-------ccceeEee-ecCCCEEEEecC--CCcEEEEeccCCeeeee-cc
Q 031924 69 FKDCSDRFVGLS-------PNSVDALL-KLDEDRVITGSE--NGLISLVGILPNRIIQP-IA 119 (150)
Q Consensus 69 ~~~~~~~~~~~~-------~~~v~~~~-~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~-~~ 119 (150)
.+...++.. . ......+. +|+|++++.+.. ++.|.++| .+++.+.. +.
T Consensus 107 -~~~~~~i~~-~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~ 165 (373)
T 2mad_H 107 -FLPIADIEL-PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS 165 (373)
T ss_pred -CcEEEEEEC-CCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC
Confidence 344444332 1 01122344 899999988764 57899999 99888777 63
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=5.4e-07 Score=57.80 Aligned_cols=139 Identities=9% Similarity=0.054 Sum_probs=88.3
Q ss_pred CeeecCcceEEEEc--CCCeEEEEEcCCCeeeeeeccCC-CcEEEEEEEeCCCEEEee-cCCCeEEEEEccccccccccc
Q 031924 1 MTFAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~ 76 (150)
++|+|++.+.++.+ .++.|+++|+++++.+..+.-.. .....+++. +..++.. -.++.+.++|.. ..+.+.++
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~-t~~v~~~i 102 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR-TLSNIKNF 102 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT-TTEEEEEE
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECC-CCcEEEEE
Confidence 46788865555543 36899999999999887765322 233345544 5555544 467899999986 34666666
Q ss_pred cccc-ccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCC-Cc---ceeEEEEcCCccEEEecccccc
Q 031924 77 VGLS-PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EY---PIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 77 ~~~~-~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~---~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
+. . +.. .. ..++++.++.+..++.+.++|..+.+.+..+.-.. +. .++.+.|. +|+..+....+..
T Consensus 103 ~~-g~~~g-~g-lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 103 TH-QMKDG-WG-LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EC-CSSSC-CE-EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EC-CCCCe-EE-EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence 54 3 222 12 24567666666678899999999988777764221 11 25677777 6776665544443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-07 Score=62.67 Aligned_cols=142 Identities=11% Similarity=0.051 Sum_probs=86.5
Q ss_pred CeeecCcceEEEEc--CCCeEEEEEcCCCeeeeee-------ccCCCcEEEEEEEeCCCEEEeecC-----CCeEEEEEc
Q 031924 1 MTFAADAMKLLGTS--GDGTLSVCNLRKNTVQTRS-------EFSEEELTSVVLMKNGRKVVCGSQ-----SGTVLLYSW 66 (150)
Q Consensus 1 i~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~~~ 66 (150)
|+++|+++.+++.. .++.+++|.+.+++.. .+ ..+...+.+++++++++..++-.. ++.|.+||+
T Consensus 22 va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~ 100 (343)
T 2qe8_A 22 ITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDT 100 (343)
T ss_dssp EEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEET
T ss_pred EEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEEC
Confidence 46789999888863 2342455554455433 11 123457899999999886665433 578999998
Q ss_pred cccccccccccc-----ccccceeEee-ecC-CCEEEEec---CCCcEEEEeccCCeeeeeccCCCC-------------
Q 031924 67 GYFKDCSDRFVG-----LSPNSVDALL-KLD-EDRVITGS---ENGLISLVGILPNRIIQPIAEHSE------------- 123 (150)
Q Consensus 67 ~~~~~~~~~~~~-----~~~~~v~~~~-~~~-~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~------------- 123 (150)
. .++...++.. .+......+. .++ +..+++.. .++.|.+||+.+++..+.+..|..
T Consensus 101 ~-tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~ 179 (343)
T 2qe8_A 101 L-NNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGV 179 (343)
T ss_dssp T-TTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTE
T ss_pred C-CCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCE
Confidence 5 3344443321 0112334555 554 44555555 678999999987776554432110
Q ss_pred ---------------cceeEEEEcCCccEEEecccc
Q 031924 124 ---------------YPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 124 ---------------~~i~~~~~~~~~~~l~s~~~~ 144 (150)
..+..++|+|||+.|..+...
T Consensus 180 ~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~ 215 (343)
T 2qe8_A 180 PVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH 215 (343)
T ss_dssp ECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS
T ss_pred EEEeccCCCceeceecccceeEeccCCCEEEEEeCC
Confidence 125789999999877765443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.3e-08 Score=71.44 Aligned_cols=132 Identities=8% Similarity=0.063 Sum_probs=78.1
Q ss_pred eeecCcceEEEE-----cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCC-------------eEEE
Q 031924 2 TFAADAMKLLGT-----SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG-------------TVLL 63 (150)
Q Consensus 2 ~~~~~~~~l~~~-----~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------------~i~i 63 (150)
+||||+++|+.+ +....|++||+++++.+.... .......++|+ |++.|+.++.+. .|++
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~ 212 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYF 212 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEE
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEE
Confidence 689999988853 233679999999997653211 11113567899 999988877663 4888
Q ss_pred EEccccccccccc-ccc--cccceeEee-ecCCCEEEEecC----CCcEEEEeccCCe-eeeeccCCCCcceeEEEEcCC
Q 031924 64 YSWGYFKDCSDRF-VGL--SPNSVDALL-KLDEDRVITGSE----NGLISLVGILPNR-IIQPIAEHSEYPIESLGIASV 134 (150)
Q Consensus 64 ~~~~~~~~~~~~~-~~~--~~~~v~~~~-~~~~~~l~~~~~----dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~ 134 (150)
|++.+.......+ ... ++....... +++|++|+.... ++.++++|+.++. ....+..+.. ..... ++++
T Consensus 213 ~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~-~~~~~-~~~~ 290 (693)
T 3iuj_A 213 HRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD-ADVSL-VDNK 290 (693)
T ss_dssp EETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS-SCEEE-EEEE
T ss_pred EECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC-ceEEE-Eecc
Confidence 9886432211122 220 112234444 889987754332 3589999987653 3344444444 23333 5555
Q ss_pred ccE
Q 031924 135 LCF 137 (150)
Q Consensus 135 ~~~ 137 (150)
|..
T Consensus 291 g~~ 293 (693)
T 3iuj_A 291 GST 293 (693)
T ss_dssp TTE
T ss_pred CCE
Confidence 443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.3e-07 Score=67.11 Aligned_cols=138 Identities=6% Similarity=0.017 Sum_probs=87.1
Q ss_pred CeeecCcceEEEEcCCC-------------eEEEEEcCCCee----eeeecc-CCCcEEEEEEEeCCCEEEeec----CC
Q 031924 1 MTFAADAMKLLGTSGDG-------------TLSVCNLRKNTV----QTRSEF-SEEELTSVVLMKNGRKVVCGS----QS 58 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~-------------~i~i~d~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~~----~d 58 (150)
++|+ |++.|+.++.+. .|++|++.++.. +..... +......+.|+|||++|+... .+
T Consensus 180 ~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 258 (693)
T 3iuj_A 180 ISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSG 258 (693)
T ss_dssp CEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSC
T ss_pred EEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCC
Confidence 4799 999888887663 499999877542 222223 344578899999999885433 23
Q ss_pred CeEEEEEcccccccccccccccccceeEeeecCCC-EEEEecCC---CcEEEEeccCCee--eeeccCCCCcceeEEEEc
Q 031924 59 GTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDED-RVITGSEN---GLISLVGILPNRI--IQPIAEHSEYPIESLGIA 132 (150)
Q Consensus 59 ~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d---g~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~ 132 (150)
..++++|+.........+.. +.........+++. +++....+ +.|..+|+.++.. .+.+..+... +. .|+
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~-~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~--~~s 334 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQG-DLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VL--TVH 334 (693)
T ss_dssp CEEEEEETTSTTCCCEEEEC-SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-CE--EEE
T ss_pred cEEEEEECCCCCCceEEEeC-CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-EE--EEE
Confidence 58899998543324445554 44444444545454 44454443 5788899876543 3344455443 43 889
Q ss_pred CCccEEEeccc
Q 031924 133 SVLCFINSGFL 143 (150)
Q Consensus 133 ~~~~~l~s~~~ 143 (150)
++++.|+....
T Consensus 335 ~~g~~lv~~~~ 345 (693)
T 3iuj_A 335 SGSGYLFAEYM 345 (693)
T ss_dssp EETTEEEEEEE
T ss_pred EECCEEEEEEE
Confidence 98888776554
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.83 E-value=5e-07 Score=58.73 Aligned_cols=139 Identities=9% Similarity=0.042 Sum_probs=83.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc----CCCcEEEEEEEeCCCEEEeecC---------CCeEEEEEcc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF----SEEELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWG 67 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~---------d~~i~i~~~~ 67 (150)
++++|+++++++. ++.|.+||.++++....... ....++.++++|+|+..++... ...-.+|.+.
T Consensus 59 i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d 136 (297)
T 3g4e_A 59 VALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLF 136 (297)
T ss_dssp EEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEEC
T ss_pred EEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEE
Confidence 4678899855554 56899999988765432221 1235789999999996664422 1233455443
Q ss_pred cccccccccccccccceeEee-ecCCCEE-EEecCCCcEEEEec--cCCee-----eeeccCCCCcceeEEEEcCCccEE
Q 031924 68 YFKDCSDRFVGLSPNSVDALL-KLDEDRV-ITGSENGLISLVGI--LPNRI-----IQPIAEHSEYPIESLGIASVLCFI 138 (150)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~~-~~~~~~l-~~~~~dg~i~~~d~--~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l 138 (150)
..++... +.. .......+. +++++.+ ++.+.++.|..|++ .++.. +..+..+.. .+..++++++|++.
T Consensus 137 ~~g~~~~-~~~-~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~-~p~g~~~d~~G~lw 213 (297)
T 3g4e_A 137 PDHHVKK-YFD-QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQ-IPDGMCIDAEGKLW 213 (297)
T ss_dssp TTSCEEE-EEE-EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGC-EEEEEEEBTTSCEE
T ss_pred CCCCEEE-Eee-ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCC-CCCeeEECCCCCEE
Confidence 2233222 222 223344555 7888755 55566789999987 34432 223323334 37789999999877
Q ss_pred Eecccc
Q 031924 139 NSGFLS 144 (150)
Q Consensus 139 ~s~~~~ 144 (150)
++....
T Consensus 214 va~~~~ 219 (297)
T 3g4e_A 214 VACYNG 219 (297)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 765443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.82 E-value=5e-08 Score=66.66 Aligned_cols=110 Identities=9% Similarity=-0.060 Sum_probs=77.3
Q ss_pred CeeecCcceEEEEc----------CCCeEEEEEcCCCeeeeeeccC-------CCcEEEEEEEeCCCEEEeecC--CCeE
Q 031924 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFS-------EEELTSVVLMKNGRKVVCGSQ--SGTV 61 (150)
Q Consensus 1 i~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i 61 (150)
|+++||+++++++. .++.|.++|..+++.+..+.-. ......+.++|||++++++.. ++.|
T Consensus 123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~V 202 (426)
T 3c75_H 123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAV 202 (426)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEE
T ss_pred eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeE
Confidence 47899999888876 4678999999999887666421 123467899999999988764 5799
Q ss_pred EEEEcccccccccccccccccceeEeeec-CCCEEEEecCCCcEEEEeccCCeee
Q 031924 62 LLYSWGYFKDCSDRFVGLSPNSVDALLKL-DEDRVITGSENGLISLVGILPNRII 115 (150)
Q Consensus 62 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~ 115 (150)
.+.|+.. .+.+.++.. ... ....+ ..+.+++.+.||.+.+.+..+++..
T Consensus 203 sVID~~t-~kvv~~I~v-~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~ 252 (426)
T 3c75_H 203 GVVDLEG-KTFDRMLDV-PDC---YHIFPASPTVFYMNCRDGSLARVDFADGETK 252 (426)
T ss_dssp EEEETTT-TEEEEEEEC-CSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCE
T ss_pred EEEECCC-CeEEEEEEc-CCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEE
Confidence 9999864 456666653 211 12233 2356677778888888887555544
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=6.9e-07 Score=57.34 Aligned_cols=139 Identities=8% Similarity=-0.045 Sum_probs=90.4
Q ss_pred CcceEEE-EcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc-ccccc
Q 031924 6 DAMKLLG-TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNS 83 (150)
Q Consensus 6 ~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~~~ 83 (150)
+++.|+. .-.++.+.++|..+.+.+..+..... ....+++||+.++++..++.+.++|..+. +...++.- ....+
T Consensus 74 ~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~-~v~~~I~Vg~~~~p 150 (266)
T 2iwa_A 74 LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTF-KLIKKHNVKYNGHR 150 (266)
T ss_dssp ETTEEEEEETTCSEEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTC-CEEEEEECEETTEE
T ss_pred eCCEEEEEEecCCEEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCC-cEEEEEEECCCCcc
Confidence 3444544 45789999999999988877753211 12446678887877777899999998643 44444442 01112
Q ss_pred ---eeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCC------------CcceeEEEEcCCcc-EEEeccccccc
Q 031924 84 ---VDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS------------EYPIESLGIASVLC-FINSGFLSLNV 147 (150)
Q Consensus 84 ---v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~-~l~s~~~~~~v 147 (150)
...+...++..++....++.|.+.|+.+++.+..+.... ......++|+|+++ +++++.....+
T Consensus 151 ~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v 230 (266)
T 2iwa_A 151 VIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL 230 (266)
T ss_dssp CCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred cccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence 233433367666666678899999999999887774310 11368999999875 56666554433
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.4e-07 Score=67.04 Aligned_cols=128 Identities=9% Similarity=-0.005 Sum_probs=85.5
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCC----------------------------Cc-----------EEEEEEEeCC
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE----------------------------EE-----------LTSVVLMKNG 49 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------------------------~~-----------v~~~~~~~~~ 49 (150)
.++.++.+|.++++|.++++.+....... .. -..++++|+.
T Consensus 321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~ 400 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT 400 (689)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC
Confidence 67788899999999999998763322110 00 1126788887
Q ss_pred CEEEeecC---------------------------------------------CCeEEEEEcccccccccccccccccce
Q 031924 50 RKVVCGSQ---------------------------------------------SGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (150)
Q Consensus 50 ~~l~~~~~---------------------------------------------d~~i~i~~~~~~~~~~~~~~~~~~~~v 84 (150)
..+++... +|.+..||+. .++..-+++. +....
T Consensus 401 ~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~-tG~~~W~~~~-~~~~~ 478 (689)
T 1yiq_A 401 GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV-KQQAAWEVPY-VTIFN 478 (689)
T ss_dssp TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT-TTEEEEEEEE-SSSCC
T ss_pred CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC-CCCeEeEccC-CCCcc
Confidence 77765421 3779999985 4565555543 32222
Q ss_pred eEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEE
Q 031924 85 DALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFI 138 (150)
Q Consensus 85 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (150)
.......+.+++.++.||.++.||.++++.+..+.........-+.|..+|+.+
T Consensus 479 ~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 479 GGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 223355678999999999999999999999888764433223446777888743
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-06 Score=57.38 Aligned_cols=133 Identities=8% Similarity=0.059 Sum_probs=80.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc----CCCcEEEEEEEeCCCEEEeecC------CCeEEEEEccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF----SEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGYFK 70 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~~~~~~~ 70 (150)
++|+|+++++++. .+ .|.+||.++++....... ....+.+++++|+|+..++... .+.|..++ .+
T Consensus 95 i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~---~g 169 (326)
T 2ghs_A 95 LAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA---KG 169 (326)
T ss_dssp EEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE---TT
T ss_pred EEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe---CC
Confidence 3578888877765 44 599999988765432221 1236889999999987665432 23444444 23
Q ss_pred ccccccccccccceeEee-ecCCCEEE-EecCCCcEEEEecc--CC-e-----eeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 71 DCSDRFVGLSPNSVDALL-KLDEDRVI-TGSENGLISLVGIL--PN-R-----IIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 71 ~~~~~~~~~~~~~v~~~~-~~~~~~l~-~~~~dg~i~~~d~~--~~-~-----~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
+.. .+.. .......+. +++++.++ +.+.++.|.+|+.. ++ + .+..+..... .+..++++++|.+.++
T Consensus 170 ~~~-~~~~-~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~-~p~gi~~d~~G~lwva 246 (326)
T 2ghs_A 170 KVT-KLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG-GMDGSVCDAEGHIWNA 246 (326)
T ss_dssp EEE-EEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS-EEEEEEECTTSCEEEE
T ss_pred cEE-EeeC-CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCC-CCCeeEECCCCCEEEE
Confidence 322 2222 223344555 78887654 44567899999985 44 2 2222322334 3678999999987766
Q ss_pred c
Q 031924 141 G 141 (150)
Q Consensus 141 ~ 141 (150)
.
T Consensus 247 ~ 247 (326)
T 2ghs_A 247 R 247 (326)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.77 E-value=6.9e-07 Score=61.20 Aligned_cols=139 Identities=11% Similarity=0.012 Sum_probs=88.7
Q ss_pred eeecCcceEEEEc-------------------CCCeEEEEEcCCCeeeeeeccC-C-CcEEEEEE--EeCCCEEEeec--
Q 031924 2 TFAADAMKLLGTS-------------------GDGTLSVCNLRKNTVQTRSEFS-E-EELTSVVL--MKNGRKVVCGS-- 56 (150)
Q Consensus 2 ~~~~~~~~l~~~~-------------------~d~~i~i~d~~~~~~~~~~~~~-~-~~v~~~~~--~~~~~~l~~~~-- 56 (150)
.|+|+++.++++. .+.+|.+||+.+++.+.++... . .....+.| +|+++++++++
T Consensus 194 ~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~ 273 (462)
T 2ece_A 194 WWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVV 273 (462)
T ss_dssp EEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEE
T ss_pred EECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEee
Confidence 3689999888884 3789999999998877766643 2 23455656 99999887776
Q ss_pred ----CCCeEEEEEcccccc--ccc-----------ccc-------cccccceeEee-ecCCCEEEEec-CCCcEEEEecc
Q 031924 57 ----QSGTVLLYSWGYFKD--CSD-----------RFV-------GLSPNSVDALL-KLDEDRVITGS-ENGLISLVGIL 110 (150)
Q Consensus 57 ----~d~~i~i~~~~~~~~--~~~-----------~~~-------~~~~~~v~~~~-~~~~~~l~~~~-~dg~i~~~d~~ 110 (150)
.+++|.+|.... +. ..+ .+. + .......+. ++++++|.++. ..+.|.++|+.
T Consensus 274 ~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~-~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 274 SLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKA-VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp ETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTE-ECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred eccCCCceEEEEEecC-CceeEEEEEeCCCcccccccccccccccc-CCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 456887765432 11 011 110 0 012234444 88999876665 47899999985
Q ss_pred C---CeeeeeccCCC---------Cc----ceeEEEEcCCccEEEecc
Q 031924 111 P---NRIIQPIAEHS---------EY----PIESLGIASVLCFINSGF 142 (150)
Q Consensus 111 ~---~~~~~~~~~~~---------~~----~i~~~~~~~~~~~l~s~~ 142 (150)
. .+.+..+.... +. ....++++|||++|..+.
T Consensus 352 d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 352 NPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp STTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 2 24444442210 00 257799999999887765
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.5e-06 Score=53.89 Aligned_cols=129 Identities=9% Similarity=0.029 Sum_probs=85.7
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc-ccccc---e
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNS---V 84 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~~~---v 84 (150)
.......++.+.+||.++.+.+.++...... ..+.+++..|+++..++.|.++|..+. +...++.- .+..+ +
T Consensus 77 ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g~~~~~l 152 (243)
T 3mbr_X 77 LIQLTWRNHEGFVYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGGRPLDNL 152 (243)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCE
T ss_pred EEEEEeeCCEEEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCCC-eEEEEEEEccCCcccccc
Confidence 3334457899999999999888777643322 334467777877777899999998643 44455432 01122 2
Q ss_pred eEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCC------------CCcceeEEEEcCCcc-EEEec
Q 031924 85 DALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH------------SEYPIESLGIASVLC-FINSG 141 (150)
Q Consensus 85 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~-~l~s~ 141 (150)
+-+...+|+.++....+..|.+.|+.+++.+..+... ...-.+.++++|+++ ++++|
T Consensus 153 NeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 153 NELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 2333457777776667889999999999987776411 112368899999765 45554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=3.2e-07 Score=66.29 Aligned_cols=129 Identities=9% Similarity=0.013 Sum_probs=86.7
Q ss_pred ceEEEEcCCCeEEEEEcCCCeeeeeeccCC----------C-cE------------------------EEEEEEeCCCEE
Q 031924 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSE----------E-EL------------------------TSVVLMKNGRKV 52 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------~-~v------------------------~~~~~~~~~~~l 52 (150)
+.++.++.+|.++++|.++++.+....... + ++ ..++++|++..+
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~ 407 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence 578888999999999999998875543211 0 11 146888888777
Q ss_pred EeecC-------------------------------------------CCeEEEEEccccccccccccccccccee-Eee
Q 031924 53 VCGSQ-------------------------------------------SGTVLLYSWGYFKDCSDRFVGLSPNSVD-ALL 88 (150)
Q Consensus 53 ~~~~~-------------------------------------------d~~i~i~~~~~~~~~~~~~~~~~~~~v~-~~~ 88 (150)
++... .|.|..||+. .++..-++.. . .... ...
T Consensus 408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~-tG~~~W~~~~-~-~~~~~g~~ 484 (677)
T 1kb0_A 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPV-AQKAAWSVEH-V-SPWNGGTL 484 (677)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETT-TTEEEEEEEE-S-SSCCCCEE
T ss_pred EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCC-CCcEEeecCC-C-CCCcCcce
Confidence 76432 2789999985 4455555443 2 2222 223
Q ss_pred ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEE
Q 031924 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 89 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (150)
...+.+++.++.||.+++||.++++.+..+.........-+.|.++|+.++
T Consensus 485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence 456778888999999999999999998887544331234466778886433
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-06 Score=56.03 Aligned_cols=133 Identities=9% Similarity=-0.008 Sum_probs=87.4
Q ss_pred cCcceEEEE-cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc-ccc
Q 031924 5 ADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL-SPN 82 (150)
Q Consensus 5 ~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-~~~ 82 (150)
++++.|... ..++.+.+||.++.+.+.++.... ....+.++++.|+....++.|.++|..+. +...++... ...
T Consensus 94 ~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~ 169 (262)
T 3nol_A 94 DWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESL-TPVRTITVTAHGE 169 (262)
T ss_dssp EETTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTC-SEEEEEECEETTE
T ss_pred EeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCC-eEEEEEEeccCCc
Confidence 344444444 468999999999998887776432 22344567888877777888999998643 444444320 112
Q ss_pred c---eeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCC-----------CCcceeEEEEcCCccEEEec
Q 031924 83 S---VDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH-----------SEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 83 ~---v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~s~ 141 (150)
+ +.-+...+|++.+....+..|.+.|+.+++.+..+... ...-.+.++|+|+++.|...
T Consensus 170 ~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVT 242 (262)
T 3nol_A 170 ELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVT 242 (262)
T ss_dssp ECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEE
T ss_pred cccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEE
Confidence 2 22333447777776667889999999999987776431 01136889999976654443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.74 E-value=8.4e-07 Score=56.68 Aligned_cols=131 Identities=11% Similarity=-0.013 Sum_probs=82.9
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEccccccccccccccccccee
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 85 (150)
+.+..+.+.+|.|+++|+++++.+..+ -. .........++++.|... -.++.+.+||..+ .+.+.+++. .... .
T Consensus 65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~T-l~~~~ti~~-~~eG-w 139 (268)
T 3nok_A 65 GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMP-PQRERTTRY-SGEG-W 139 (268)
T ss_dssp TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTT-TEEEEEEEC-SSCC-C
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCc-CcEEEEEeC-CCce-e
Confidence 456667778889999999999887766 22 233333334455555444 4678999999853 466666664 2222 1
Q ss_pred EeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCC-Cc---ceeEEEEcCCccEEEecccc
Q 031924 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EY---PIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~---~i~~~~~~~~~~~l~s~~~~ 144 (150)
.+ .++++.|+.+..++.|+++|..+.+.+..+.... .. .++.+.|. +|+..+....+
T Consensus 140 GL-t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s 200 (268)
T 3nok_A 140 GL-CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHS 200 (268)
T ss_dssp CE-EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred EE-ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence 22 2456666666678999999999988777764311 11 14556766 66666554333
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.8e-06 Score=54.28 Aligned_cols=133 Identities=12% Similarity=0.030 Sum_probs=88.0
Q ss_pred cCcceEE-EEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc-cccc
Q 031924 5 ADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPN 82 (150)
Q Consensus 5 ~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~~ 82 (150)
++++.|+ ....++.+.+||.++.+.+.++..... ...+.++++.|+.+..++.|.++|..+. +...++.- ....
T Consensus 103 ~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e---GwGLt~Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~ 178 (268)
T 3nok_A 103 SDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE---GWGLCYWNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQ 178 (268)
T ss_dssp ECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSC---CCCEEEETTEEEEECSSSEEEEECTTTC-CEEEEEECEETTE
T ss_pred EeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCc---eeEEecCCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCc
Confidence 3444444 445789999999999998877764322 2333467888888877899999998643 55555432 0122
Q ss_pred c---eeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCC------------CCcceeEEEEcCCcc-EEEec
Q 031924 83 S---VDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH------------SEYPIESLGIASVLC-FINSG 141 (150)
Q Consensus 83 ~---v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~-~l~s~ 141 (150)
. ++-+...+|++.+....+..|.+.|+.+++.+..+... ...-.+.++++|+++ +++||
T Consensus 179 ~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 179 PVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 2 22333457877766667889999999999987776421 112368899999754 55554
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.70 E-value=9e-08 Score=67.46 Aligned_cols=122 Identities=9% Similarity=0.012 Sum_probs=76.3
Q ss_pred eEEEEEcCC--Cee-eeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEcccccc-----------ccccccccccc
Q 031924 18 TLSVCNLRK--NTV-QTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKD-----------CSDRFVGLSPN 82 (150)
Q Consensus 18 ~i~i~d~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~-----------~~~~~~~~~~~ 82 (150)
.|.+.|.++ ++. +..+.. .....++.++|||+++++.+ .+.++.++|+..... ....... ...
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~g 332 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLG 332 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSC
T ss_pred cEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCC
Confidence 366777766 333 333332 23457899999999886655 678999999963311 1222222 233
Q ss_pred ceeEeeecCCCEEEEecCCCcEEEEeccC----------CeeeeeccCCCCcce-----eEEEEcCCccEEEecc
Q 031924 83 SVDALLKLDEDRVITGSENGLISLVGILP----------NRIIQPIAEHSEYPI-----ESLGIASVLCFINSGF 142 (150)
Q Consensus 83 ~v~~~~~~~~~~l~~~~~dg~i~~~d~~~----------~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~s~~ 142 (150)
+......++|....+...|++|..||+.. .+.+..+..|-. |- ..+.++|||++|.+..
T Consensus 333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq-pGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 333 PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEE
T ss_pred cceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc-cccceeccceEeCCCCCEEEEcC
Confidence 33334478886556677899999999876 456666655533 21 2235579999988654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-06 Score=59.71 Aligned_cols=136 Identities=8% Similarity=0.034 Sum_probs=88.7
Q ss_pred cCcceEEEE-cCCCeEEEEEcCCC----eeeeeec------c-CCCcEEEEEEEeCCCEEEeecCC------CeEEEEEc
Q 031924 5 ADAMKLLGT-SGDGTLSVCNLRKN----TVQTRSE------F-SEEELTSVVLMKNGRKVVCGSQS------GTVLLYSW 66 (150)
Q Consensus 5 ~~~~~l~~~-~~d~~i~i~d~~~~----~~~~~~~------~-~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~~~ 66 (150)
+++++|+.. ..++.|.++|+.+. +..+.++ . .......+...|+| .+++...+ +.+.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 677777665 47899999999754 4455552 1 11245677888999 55554443 78999997
Q ss_pred cccccccccccc-cccccee-Eee-ecCCCEEEEec-------------------CCCcEEEEeccCCeeeeeccCC-CC
Q 031924 67 GYFKDCSDRFVG-LSPNSVD-ALL-KLDEDRVITGS-------------------ENGLISLVGILPNRIIQPIAEH-SE 123 (150)
Q Consensus 67 ~~~~~~~~~~~~-~~~~~v~-~~~-~~~~~~l~~~~-------------------~dg~i~~~d~~~~~~~~~~~~~-~~ 123 (150)
.+ .+.+.++.. ..+..+. .+. +++++.+++.. ...+|.+||+.+++.++++... .+
T Consensus 172 ~T-~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 172 YS-FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TT-CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CC-CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 53 366666642 0221111 243 88888888874 3689999999988888877543 22
Q ss_pred cceeEEEE--cCCccEEEecc
Q 031924 124 YPIESLGI--ASVLCFINSGF 142 (150)
Q Consensus 124 ~~i~~~~~--~~~~~~l~s~~ 142 (150)
.....++| +|+++++..++
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~ 271 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINM 271 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEE
T ss_pred CccceeEeeECCCCCEEEEEE
Confidence 23555656 99998766554
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=7.6e-08 Score=64.63 Aligned_cols=66 Identities=8% Similarity=-0.128 Sum_probs=51.3
Q ss_pred CeeecCcceEEEEc----------CCCeEEEEEcCCCeeeeeeccC-------CCcEEEEEEEeCCCEEEeecC--CCeE
Q 031924 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFS-------EEELTSVVLMKNGRKVVCGSQ--SGTV 61 (150)
Q Consensus 1 i~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i 61 (150)
+.++||+++++++. .++.|.+||..+++.+..+... ......++++|||++++++.. +..+
T Consensus 70 i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v 149 (368)
T 1mda_H 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA 149 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEE
T ss_pred eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeE
Confidence 46899999999886 3789999999999988777532 123568899999999988764 4567
Q ss_pred EE--EEc
Q 031924 62 LL--YSW 66 (150)
Q Consensus 62 ~i--~~~ 66 (150)
.+ +|.
T Consensus 150 ~V~~iD~ 156 (368)
T 1mda_H 150 GLSVPGA 156 (368)
T ss_dssp EEEETTT
T ss_pred EEEEEch
Confidence 77 776
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.3e-06 Score=57.35 Aligned_cols=135 Identities=5% Similarity=0.024 Sum_probs=80.4
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC-CC----eEEEEEcccccccc-
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG----TVLLYSWGYFKDCS- 73 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~i~~~~~~~~~~- 73 (150)
|+++| ++..|+.+...+.|+.+|++.++..... ........+++++++++|+++.. ++ .+..++.. +...
T Consensus 142 lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~--g~~~~ 218 (430)
T 3tc9_A 142 LSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE--SGFKV 218 (430)
T ss_dssp EEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG--GTSCS
T ss_pred EEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC--Cceee
Confidence 46787 4556666655488999999877544333 34556789999999996666654 22 34444432 2221
Q ss_pred -cccccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccE-EEe
Q 031924 74 -DRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCF-INS 140 (150)
Q Consensus 74 -~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s 140 (150)
..+.. ... ...+. .+ ++.++++-..++.|+.++...+................++|+|+|++ +++
T Consensus 219 ~~~l~~-~~~-p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 219 ITELTK-GQN-CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp EEEEEE-CSS-CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred eeeecc-CCC-ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEE
Confidence 12211 111 22333 66 67777777778899999987665422221111113678999999984 444
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.68 E-value=3e-06 Score=54.08 Aligned_cols=136 Identities=8% Similarity=0.062 Sum_probs=85.0
Q ss_pred eeecCcceEEEEcCCC--eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
.|+ ++.++.+.+.+| .|+++|+++++.+..+.... ........+++..|.... .++.+.+||..+ .+.+.+++.
T Consensus 49 ~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t-~~~~~ti~~ 125 (262)
T 3nol_A 49 FYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRN-LRQVRSFNY 125 (262)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTT-CCEEEEEEC
T ss_pred EEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECcc-CcEEEEEEC
Confidence 456 555666666655 89999999999887765433 333333444566665554 578999999853 466666664
Q ss_pred ccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCC-Ccc---eeEEEEcCCccEEEecccc
Q 031924 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYP---IESLGIASVLCFINSGFLS 144 (150)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~---i~~~~~~~~~~~l~s~~~~ 144 (150)
.... ..+ .++++.|+.+..++.|+++|..+.+.+..+.... +.+ ++.+.|. +|+..+..-.+
T Consensus 126 -~~eG-~gl-t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 126 -DGEG-WGL-THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp -SSCC-CCE-EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred -CCCc-eEE-ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC
Confidence 2221 122 3456666666667899999999888777764321 112 4456665 66665544333
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-05 Score=50.01 Aligned_cols=133 Identities=7% Similarity=-0.009 Sum_probs=80.5
Q ss_pred CeeecCcceEEEEcC---CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEe-ecCCCeEEEEEccccccccccc
Q 031924 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
++++|++..|+.+.. .+.|..+++..................+++++++..|+. -...+.|.+++.... .....+
T Consensus 127 i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~ 205 (267)
T 1npe_A 127 IVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVL 205 (267)
T ss_dssp EEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEE
T ss_pred EEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEe
Confidence 467886555555443 468888887643222112223346789999998766654 455689999998522 222222
Q ss_pred ccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc
Q 031924 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC 136 (150)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (150)
.. ......+....+.++++...++.|..+|..+++.+..+..........+++.|++.
T Consensus 206 ~~--~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 206 EG--LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EC--CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred cC--CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 22 11223444224555566556789999999989888887543321266788888875
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.51 E-value=4e-05 Score=48.45 Aligned_cols=133 Identities=10% Similarity=0.050 Sum_probs=79.8
Q ss_pred eeecCcceEEEEcCC--CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEccccccccccccc
Q 031924 2 TFAADAMKLLGTSGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
.|++ +.++.+.+.. ..|+.+|+++++.+..+..... .......+.+..|... -.++.+.+||..+ .+.+.+++.
T Consensus 27 ~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~t-l~~~~ti~~ 103 (243)
T 3mbr_X 27 FYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLAT-LTPRARFRY 103 (243)
T ss_dssp EEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTT-TEEEEEEEC
T ss_pred EEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCc-CcEEEEEeC
Confidence 4554 4455555544 4899999999998877654332 2233333445555444 4689999999853 466677764
Q ss_pred ccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCC-Cc---ceeEEEEcCCccEEEec
Q 031924 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EY---PIESLGIASVLCFINSG 141 (150)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~---~i~~~~~~~~~~~l~s~ 141 (150)
.... ..++ +++..|+.+..++.|+++|..+.+.+..+.-.. +. .++.+.+. +|+..+..
T Consensus 104 -~~~G-wglt-~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 104 -PGEG-WALT-SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp -SSCC-CEEE-ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred -CCCc-eEEe-eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 3222 2333 445555555668899999999888777664321 11 14445554 55555443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=8.3e-08 Score=64.43 Aligned_cols=122 Identities=12% Similarity=-0.028 Sum_probs=65.7
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccccccee
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 85 (150)
++..+++++.++.+..||.++|+.+..+..+. ...++|++..+++++.++.++.||.+ .++...++.. .. ..
T Consensus 91 ~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~-tG~~~W~~~~-~~--~~ 162 (369)
T 2hz6_A 91 SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTK-TRELRWNATY-FD--YA 162 (369)
T ss_dssp ----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSS-SSSCCCEEEE-EE--EC
T ss_pred cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECC-CCCEEEeEec-cc--cc
Confidence 34567777789999999999998876665443 23456688889999999999999985 3455444432 11 11
Q ss_pred Eee-ecC---CCEEEEecCCCcEEEEeccCCeeeeeccCCCCcce-eEEEEcCCccE
Q 031924 86 ALL-KLD---EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI-ESLGIASVLCF 137 (150)
Q Consensus 86 ~~~-~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~ 137 (150)
... ..+ +..+++++.||.++.||..+++.+...... . ++ ....++++|..
T Consensus 163 ~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~-pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 163 ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA-S-PVVAFYVWQREGLR 217 (369)
T ss_dssp CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS-S-CEEEEEECTTSSCE
T ss_pred CccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC-C-ceEEEEEecCCceE
Confidence 111 221 156777888999999999999887776432 3 33 34456667753
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.50 E-value=7.3e-06 Score=58.02 Aligned_cols=139 Identities=9% Similarity=-0.002 Sum_probs=88.4
Q ss_pred cCcceEEEEc------------------CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCC-------
Q 031924 5 ADAMKLLGTS------------------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG------- 59 (150)
Q Consensus 5 ~~~~~l~~~~------------------~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------- 59 (150)
|+++++++++ .++.+.++|.++.+...++.-.. ....++++|+|+++++.+.+.
T Consensus 145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~ 223 (595)
T 1fwx_A 145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLP 223 (595)
T ss_dssp SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred CCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchh
Confidence 8888888883 35689999999998877765322 346778899999998887553
Q ss_pred --------eEEEEE-----------------------cccc-ccc-ccccccccccceeEeeecCCCEEEEec-CCCcEE
Q 031924 60 --------TVLLYS-----------------------WGYF-KDC-SDRFVGLSPNSVDALLKLDEDRVITGS-ENGLIS 105 (150)
Q Consensus 60 --------~i~i~~-----------------------~~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~l~~~~-~dg~i~ 105 (150)
.+.++| .+.. ++. ...++. ...+--...+|+|+++++++ .+.+|.
T Consensus 224 ~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~Vs 302 (595)
T 1fwx_A 224 EMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVT 302 (595)
T ss_dssp HHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEE
T ss_pred hccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEE
Confidence 244444 3210 111 222322 12222223388999776665 578999
Q ss_pred EEeccCCe------------eeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 106 LVGILPNR------------IIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 106 ~~d~~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
++|+.+.+ ....+. .+.....++|+|+|....+...+..|
T Consensus 303 Vid~~~~~~~~~~~l~~~~~v~~~v~--vG~gP~h~aF~~dG~aY~t~~ldsqV 354 (595)
T 1fwx_A 303 VLDVTRFDAVFYENADPRSAVVAEPE--LGLGPLHTAFDGRGNAYTSLFLDSQV 354 (595)
T ss_dssp EEEGGGHHHHHHSCCCGGGGEEECCB--CCSCEEEEEECTTSEEEEEETTTTEE
T ss_pred EEECcccccccccccCcccceEEEcC--CCCCcceEEECCCCeEEEEEecCCcE
Confidence 99998642 233332 22358889999999666666666554
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-05 Score=57.18 Aligned_cols=128 Identities=9% Similarity=-0.061 Sum_probs=80.3
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCC-------------CcE--------------------------EEEEEEeCC
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE-------------EEL--------------------------TSVVLMKNG 49 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~~~~~ 49 (150)
.++.++.+|.+.++|.++++.+....... .++ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 56678889999999999998775543211 111 235778876
Q ss_pred CEEEeec-------------------------------------CCCeEEEEEcccccccccccccccccceeEe-eecC
Q 031924 50 RKVVCGS-------------------------------------QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLD 91 (150)
Q Consensus 50 ~~l~~~~-------------------------------------~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~-~~~~ 91 (150)
..+++.. .+|.+..||.. .++..-++.. . ..+... ....
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~-tG~~~W~~~~-~-~~~~~~~~~t~ 474 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLT-TGKAKWTKWE-K-FAAWGGTLYTK 474 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTT-TCCEEEEEEE-S-SCCCSBCEEET
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECC-CCCEEEEecC-C-CCccceeEEEC
Confidence 6666543 34788888875 3455444432 1 112111 1334
Q ss_pred CCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEE
Q 031924 92 EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 92 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (150)
+..++.++.|+.++.+|.++++.+..+.......-.-+.+..+|+.++
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 667778999999999999999988877543321122244667776544
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.9e-05 Score=57.32 Aligned_cols=71 Identities=10% Similarity=0.151 Sum_probs=49.6
Q ss_pred eeecCcceEEEEcCCCe-------------------EEEEEcCCCeeeeeecc--CC-------CcEEEEEEEeCCC---
Q 031924 2 TFAADAMKLLGTSGDGT-------------------LSVCNLRKNTVQTRSEF--SE-------EELTSVVLMKNGR--- 50 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~-------------------i~i~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~--- 50 (150)
+++|+..+++.+..++. |..+|.++|+.+...+. +. .+........+|+
T Consensus 241 ~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~ 320 (689)
T 1yiq_A 241 AYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRK 320 (689)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE
T ss_pred eEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEE
Confidence 46777888888887764 99999999998876653 21 1222223334665
Q ss_pred EEEeecCCCeEEEEEcccccccc
Q 031924 51 KVVCGSQSGTVLLYSWGYFKDCS 73 (150)
Q Consensus 51 ~l~~~~~d~~i~i~~~~~~~~~~ 73 (150)
.++.++.+|.++++|.+ .++.+
T Consensus 321 ~v~~~~~~G~l~~lD~~-tG~~l 342 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRA-TGELL 342 (689)
T ss_dssp EEEECCTTSEEEEEETT-TCCEE
T ss_pred EEEEECCCCeEEEEECC-CCCEe
Confidence 78899999999999975 44443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=4.3e-05 Score=50.13 Aligned_cols=134 Identities=8% Similarity=-0.041 Sum_probs=78.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeec-c------------------CCCcEEEEEEEe-CCCEEEeecCCCe
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-F------------------SEEELTSVVLMK-NGRKVVCGSQSGT 60 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~------------------~~~~v~~~~~~~-~~~~l~~~~~d~~ 60 (150)
++|++++++++++..++.|..|+...++...... . .......+++.+ +++ |+++...+.
T Consensus 24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~~~ 102 (322)
T 2fp8_A 24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCYYH 102 (322)
T ss_dssp EECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETTTE
T ss_pred EEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECCCC
Confidence 4678888878888889999999987654332111 0 013578899997 555 555544455
Q ss_pred EEEEEcccccccccccc----cccccceeEee-ec-CCCEEEEecC-----------------CCcEEEEeccCCeeeee
Q 031924 61 VLLYSWGYFKDCSDRFV----GLSPNSVDALL-KL-DEDRVITGSE-----------------NGLISLVGILPNRIIQP 117 (150)
Q Consensus 61 i~i~~~~~~~~~~~~~~----~~~~~~v~~~~-~~-~~~~l~~~~~-----------------dg~i~~~d~~~~~~~~~ 117 (150)
+..+|.. .+. ...+. +........+. .+ +|++.++-.. ++.|..+|..+++....
T Consensus 103 i~~~d~~-~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 103 LSVVGSE-GGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp EEEECTT-CEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred EEEEeCC-CCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 7888864 222 22221 10112234455 67 7777766432 36788888866654322
Q ss_pred ccCCCCcceeEEEEcCCccEEE
Q 031924 118 IAEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 118 ~~~~~~~~i~~~~~~~~~~~l~ 139 (150)
... .. ....++++|+|+.|.
T Consensus 181 ~~~-~~-~p~gia~~~dg~~ly 200 (322)
T 2fp8_A 181 LKE-LH-VPGGAEVSADSSFVL 200 (322)
T ss_dssp EEE-ES-CCCEEEECTTSSEEE
T ss_pred ccC-Cc-cCcceEECCCCCEEE
Confidence 211 12 256789999987544
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=9.2e-05 Score=47.22 Aligned_cols=141 Identities=10% Similarity=-0.016 Sum_probs=80.1
Q ss_pred CeeecCcceEEEE-cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++|+++++.|+.+ ..++.|..++...+...............+++++++..++ +-..++.|.++++. +.....+..
T Consensus 41 i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~--g~~~~~~~~ 118 (267)
T 1npe_A 41 LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD--GTQRRVLFD 118 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEC
T ss_pred EEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC--CCCEEEEEE
Confidence 3677765555544 4678999999876544333333335678999999765554 44566899999975 222222211
Q ss_pred ccccceeEee-ecCCCEE-EEecC--CCcEEEEeccCCeeeeecc-CCCCcceeEEEEcCCccE-EEeccccc
Q 031924 79 LSPNSVDALL-KLDEDRV-ITGSE--NGLISLVGILPNRIIQPIA-EHSEYPIESLGIASVLCF-INSGFLSL 145 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l-~~~~~--dg~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~-l~s~~~~~ 145 (150)
........+. .+++..+ ++... .+.|..+++... ....+. .... ....+++++++.. +++-....
T Consensus 119 ~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~-~P~gia~d~~~~~lyv~d~~~~ 189 (267)
T 1npe_A 119 TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLG-LPNGLTFDAFSSQLCWVDAGTH 189 (267)
T ss_dssp SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCS-CEEEEEEETTTTEEEEEETTTT
T ss_pred CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCC-CCcEEEEcCCCCEEEEEECCCC
Confidence 0112334555 6754444 44433 468888887532 222221 2223 3778999997654 44433333
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.38 E-value=8.8e-06 Score=53.18 Aligned_cols=124 Identities=15% Similarity=0.039 Sum_probs=80.7
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeE
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~ 86 (150)
+..+..++.++.+..+|.. ++...........+.++...+++. +..++.++.+..||.. ++....+.. ....+.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~--g~~~~~~~~-~~~~~~~ 181 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD--GTEKWRFKT-NDAITSA 181 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT--SCEEEEEEC-SSCCCSC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC--CCEeEEEec-CCCceee
Confidence 3456777788999999988 766655554444555666666666 6667788999999975 444444443 3334444
Q ss_pred ee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 87 LL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 87 ~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
+. ..++.+++ ++ +.+..+| .+++.......... .+.++..+++|.+.+.
T Consensus 182 ~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~-~~~~~~~~~~g~l~v~ 231 (330)
T 3hxj_A 182 ASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYW-TVTRPAISEDGTIYVT 231 (330)
T ss_dssp CEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSC-CCSCCEECTTSCEEEE
T ss_pred eEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCc-ceeceEECCCCeEEEE
Confidence 44 35665444 44 8889999 66666555544434 4777888888766554
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=2e-05 Score=56.96 Aligned_cols=132 Identities=11% Similarity=0.070 Sum_probs=81.4
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCC-----------C-cE------------------------EEEEEEeCCCEE
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE-----------E-EL------------------------TSVVLMKNGRKV 52 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------~-~v------------------------~~~~~~~~~~~l 52 (150)
.++.++.+|.+.++|.++|+.+....... . ++ ..++++|+...+
T Consensus 316 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~ 395 (668)
T 1kv9_A 316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLV 395 (668)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEE
T ss_pred EEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEE
Confidence 57888899999999999998773322111 0 00 125677775555
Q ss_pred Eee------------------------------------cCCCeEEEEEcccccccccccccccccceeEeeecCCCEEE
Q 031924 53 VCG------------------------------------SQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVI 96 (150)
Q Consensus 53 ~~~------------------------------------~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 96 (150)
++. ..+|.|..||+. .++..-+... ............+.+++
T Consensus 396 yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~-tG~~~W~~~~-~~~~~~~~~~t~gg~vf 473 (668)
T 1kv9_A 396 YIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV-KQKAAWKVPY-PTHWNGGTLSTAGNLVF 473 (668)
T ss_dssp EEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETT-TTEEEEEEEE-SSSCCCCEEEETTTEEE
T ss_pred EEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCC-CCcEEEEccC-CCCCcCceeEeCCCEEE
Confidence 431 134789999985 4455544433 22111122244677888
Q ss_pred EecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc-EEEecc
Q 031924 97 TGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC-FINSGF 142 (150)
Q Consensus 97 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~ 142 (150)
.++.|+.++.||.++++.+..+.........-+.+..+|+ +++.+.
T Consensus 474 ~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 474 QGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 8999999999999999988877544321112344556666 555443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.36 E-value=3e-05 Score=51.81 Aligned_cols=110 Identities=10% Similarity=0.042 Sum_probs=72.6
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccC---------CCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS---------EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
.+..+++++.++.|..+|.++++.+...... ...+.+ ....++..+++++.++.+..+|.. .++..-+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~-tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTS-DGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETT-TCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECC-CCCEEEEE
Confidence 4567888888999999999999887655432 122222 222346678888899999999975 34544444
Q ss_pred ccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeecc
Q 031924 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 119 (150)
.. .. .+.......+..++.++.++.+..+|..+++.+....
T Consensus 130 ~~-~~-~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~ 170 (376)
T 3q7m_A 130 KV-AG-EALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVN 170 (376)
T ss_dssp EC-SS-CCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eC-CC-ceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEe
Confidence 32 21 1211111124577888889999999999988776654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.36 E-value=8.7e-06 Score=53.20 Aligned_cols=132 Identities=14% Similarity=-0.001 Sum_probs=80.7
Q ss_pred cCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccce
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v 84 (150)
+++. +..++ +.+..+| .+++...........+.++...++|. +..++.++.+..++.. ++....+.. .....
T Consensus 186 ~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~--g~~~~~~~~-~~~~~ 257 (330)
T 3hxj_A 186 KDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD--GTEKWRFKT-GKRIE 257 (330)
T ss_dssp TTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT--SCEEEEEEC-SSCCC
T ss_pred CCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC--CCEeEEeeC-CCCcc
Confidence 4554 44444 7889999 67766665555555677777777765 5666677888888742 344444433 22222
Q ss_pred eEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 85 DALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 85 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
..+....+..+..++.+|.+..+|. +++.+..+..... .+.++..+++|++.+ |+.++.+
T Consensus 258 ~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~-~~~~~~~d~~g~l~~-gt~~G~~ 317 (330)
T 3hxj_A 258 SSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSW-IIATPVIDENGTIYF-GTRNGKF 317 (330)
T ss_dssp SCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSC-CCSCCEECTTCCEEE-ECTTSCE
T ss_pred ccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCc-cccceEEcCCCEEEE-EcCCCeE
Confidence 3333222446667788889999996 5665555544333 477788888887665 4444433
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.8e-05 Score=56.29 Aligned_cols=143 Identities=9% Similarity=0.095 Sum_probs=90.2
Q ss_pred eeecCcceEEEEcCCC-------------------eEEEEEcCCCeeeeeecc--CC-------CcEEEEEEEeCC---C
Q 031924 2 TFAADAMKLLGTSGDG-------------------TLSVCNLRKNTVQTRSEF--SE-------EELTSVVLMKNG---R 50 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~-------------------~i~i~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~---~ 50 (150)
+++|++..++.+..++ .|..+|.++++.+...+. +. ....-+....+| .
T Consensus 249 ~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~ 328 (677)
T 1kb0_A 249 TFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRK 328 (677)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEE
T ss_pred eEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEee
Confidence 4677888888887664 599999999998766543 21 122333444577 6
Q ss_pred EEEeecCCCeEEEEEcccccccccccccccc-c----------ce------------------------eEee-ecCCCE
Q 031924 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-N----------SV------------------------DALL-KLDEDR 94 (150)
Q Consensus 51 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~-~----------~v------------------------~~~~-~~~~~~ 94 (150)
.++.++.+|.++++|.. .++.+..+.. .+ . .+ ..+. ++++.+
T Consensus 329 ~l~~~~~~G~l~~lD~~-tG~~l~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~ 406 (677)
T 1kb0_A 329 VILHAPKNGFFFVLDRT-NGKFISAKNF-VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGL 406 (677)
T ss_dssp EEEECCTTSEEEEEETT-TCCEEEEEES-SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTE
T ss_pred EEEEECCCCEEEEEECC-CCCEeccccc-cccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCE
Confidence 78999999999999975 4454433321 10 0 00 0122 566666
Q ss_pred EEEecC-------------------------------------------CCcEEEEeccCCeeeeeccCCCCcceeEEEE
Q 031924 95 VITGSE-------------------------------------------NGLISLVGILPNRIIQPIAEHSEYPIESLGI 131 (150)
Q Consensus 95 l~~~~~-------------------------------------------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~ 131 (150)
+++... .|.|..||+.+++.+..+... . ++....+
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~-~~~~g~~ 484 (677)
T 1kb0_A 407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-S-PWNGGTL 484 (677)
T ss_dssp EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-S-SCCCCEE
T ss_pred EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-C-CCcCcce
Confidence 666432 278999999999988777432 2 3444456
Q ss_pred cCCccEEEecccccccc
Q 031924 132 ASVLCFINSGFLSLNVN 148 (150)
Q Consensus 132 ~~~~~~l~s~~~~~~v~ 148 (150)
..++..++.++.++.+.
T Consensus 485 ~~~g~~v~~g~~dg~l~ 501 (677)
T 1kb0_A 485 TTAGNVVFQGTADGRLV 501 (677)
T ss_dssp EETTTEEEEECTTSEEE
T ss_pred EeCCCEEEEECCCCcEE
Confidence 66666777677666554
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.3e-05 Score=55.77 Aligned_cols=80 Identities=9% Similarity=-0.015 Sum_probs=49.7
Q ss_pred CCeEEEEEcccccccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc-
Q 031924 58 SGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC- 136 (150)
Q Consensus 58 d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 136 (150)
+|.|..||+. .++..-+.+. ............+.+++.++.|+.++.||.++++.+..+.........-+.|..+|+
T Consensus 465 ~G~l~A~D~~-tG~~~W~~~~-~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 465 VGSLRAMDPV-SGKVVWEHKE-HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp SEEEEEECTT-TCCEEEEEEE-SSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cceEEEEECC-CCCEEEEecC-CCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence 5788888875 3454444332 211111111234678888999999999999999998887554331122366777886
Q ss_pred EEE
Q 031924 137 FIN 139 (150)
Q Consensus 137 ~l~ 139 (150)
|++
T Consensus 543 Yv~ 545 (582)
T 1flg_A 543 YLG 545 (582)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.30 E-value=5.4e-05 Score=50.60 Aligned_cols=108 Identities=12% Similarity=0.198 Sum_probs=72.0
Q ss_pred cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeE
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~ 86 (150)
+..++.++.++.+..+|.++++.+..... .....+.. ++..++.++.++.+..+|.. .++...+...........
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~ 313 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTID-GGVTLWTQSDLLHRLLTS 313 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETT-TCCEEEEECTTTTSCCCC
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECC-CCcEEEeecccCCCcccC
Confidence 45677777899999999999987765542 22333333 46778888889999999985 344443332101111111
Q ss_pred eeecCCCEEEEecCCCcEEEEeccCCeeeeeccC
Q 031924 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (150)
Q Consensus 87 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 120 (150)
.. ..+..++.++.+|.++.+|..+++.+.....
T Consensus 314 ~~-~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 314 PV-LYNGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp CE-EETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CE-EECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 21 2356788888999999999999988776644
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.9e-05 Score=56.86 Aligned_cols=136 Identities=7% Similarity=-0.000 Sum_probs=74.9
Q ss_pred eee-cCcceEEEEc-CC----CeEEEEEcCCC-eeee-eeccCCCcEEEEEEEeCCCEEEeecCC-----CeEEEEEccc
Q 031924 2 TFA-ADAMKLLGTS-GD----GTLSVCNLRKN-TVQT-RSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGY 68 (150)
Q Consensus 2 ~~~-~~~~~l~~~~-~d----~~i~i~d~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~ 68 (150)
.|| ||+++|+.+. .+ .+|+++|+.++ +.+. .+. .....+.|+|||+.|+....+ ..|..+++..
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt 256 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK 256 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC
Confidence 589 9999888653 22 35999999988 6321 111 123467899999888766554 2567777653
Q ss_pred cccc-ccccccccccceeEee-ecCCCEEEEecC---CCcEEEEeccCCe-ee--eeccCCCCcceeEEEEcCCccEEEe
Q 031924 69 FKDC-SDRFVGLSPNSVDALL-KLDEDRVITGSE---NGLISLVGILPNR-II--QPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 69 ~~~~-~~~~~~~~~~~v~~~~-~~~~~~l~~~~~---dg~i~~~d~~~~~-~~--~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
.... ...+............ +++|+.|+..+. ...|+++|+.++. .. ..+......+...+.|+.++.+++.
T Consensus 257 ~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~ 336 (751)
T 2xe4_A 257 LQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVIL 336 (751)
T ss_dssp CGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEE
T ss_pred CchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEE
Confidence 2111 1111110122233333 889998776553 3468888887642 12 3332222223445555444444444
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=6.3e-06 Score=55.39 Aligned_cols=90 Identities=10% Similarity=-0.188 Sum_probs=66.6
Q ss_pred eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec----------CCCeEEEEEccccccccccccccc-------
Q 031924 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWGYFKDCSDRFVGLS------- 80 (150)
Q Consensus 18 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~i~~~~~~~~~~~~~~~~~------- 80 (150)
+|.++|..+++.+.++.....+ .+.++||+++++++. .++.|.+||..+ .+...++.. .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-~~vv~~I~v-~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIEL-PDAPRFSV 122 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEE-TTSCSCCB
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CCEEEEEEC-CCcccccc
Confidence 8889999999998888755555 799999999998876 368999999864 466666643 2
Q ss_pred -ccceeEeeecCCCEEEEecC--CCcEEE--EeccC
Q 031924 81 -PNSVDALLKLDEDRVITGSE--NGLISL--VGILP 111 (150)
Q Consensus 81 -~~~v~~~~~~~~~~l~~~~~--dg~i~~--~d~~~ 111 (150)
..+-....+++|++++.+.. +..+.+ +|+.+
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 12223334899998888764 457888 88865
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00026 Score=49.41 Aligned_cols=136 Identities=7% Similarity=0.098 Sum_probs=78.6
Q ss_pred Ceeec-CcceEEEE-cCCCeEEEEEcCCCeeeeeecc---CCCcEEEEEE-------EeCCCEEEeecCCC-------eE
Q 031924 1 MTFAA-DAMKLLGT-SGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVL-------MKNGRKVVCGSQSG-------TV 61 (150)
Q Consensus 1 i~~~~-~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~l~~~~~d~-------~i 61 (150)
|+|+| +...|+.+ ...+.|++.|.+.+........ .......++| ++++++++++...+ .+
T Consensus 144 la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V 223 (496)
T 3kya_A 144 LAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSV 223 (496)
T ss_dssp EEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEE
T ss_pred EEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceE
Confidence 46888 34444444 4457799999988765543332 1235899999 99999777665543 25
Q ss_pred EEEEcccccccc-----cccccccccceeEeeec-CCCEEEEecCCCcEEEEecc-------CCee-----------eee
Q 031924 62 LLYSWGYFKDCS-----DRFVGLSPNSVDALLKL-DEDRVITGSENGLISLVGIL-------PNRI-----------IQP 117 (150)
Q Consensus 62 ~i~~~~~~~~~~-----~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~~~d~~-------~~~~-----------~~~ 117 (150)
.+++....+... +.+.. ...+......+ ++.++++-..++.|+.+|+. ++.. ...
T Consensus 224 ~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~ 302 (496)
T 3kya_A 224 YIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQ 302 (496)
T ss_dssp EEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEE
T ss_pred EEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccce
Confidence 566533212221 12221 11122222256 56667777788899999987 4443 111
Q ss_pred -ccCCCCcceeEEEEcCCccE
Q 031924 118 -IAEHSEYPIESLGIASVLCF 137 (150)
Q Consensus 118 -~~~~~~~~i~~~~~~~~~~~ 137 (150)
+..........++|+|+|++
T Consensus 303 l~~~~~~~~p~~ia~~p~G~~ 323 (496)
T 3kya_A 303 LFTIADPSWEFQIFIHPTGKY 323 (496)
T ss_dssp EEECSSSSCCEEEEECTTSSE
T ss_pred eEecCCCCCceEEEEcCCCCE
Confidence 11111213578999999984
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00014 Score=52.04 Aligned_cols=79 Identities=11% Similarity=-0.006 Sum_probs=47.4
Q ss_pred CCeEEEEEccccccccccccccccccee-EeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc
Q 031924 58 SGTVLLYSWGYFKDCSDRFVGLSPNSVD-ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC 136 (150)
Q Consensus 58 d~~i~i~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (150)
.|.+..||+. .++..-+.+. ..+.. ......+.+++.++.|+.++.+|.++++.+..+.........-+.+..+|+
T Consensus 452 ~G~l~A~D~~-tG~~~W~~~~--~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~ 528 (599)
T 1w6s_A 452 LGQIKAYNAI-TGDYKWEKME--RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT 528 (599)
T ss_dssp CEEEEEECTT-TCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cCeEEEEECC-CCCEEeEecC--CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCE
Confidence 4677777774 3344433321 11111 112335677888999999999999999988877543321123356667776
Q ss_pred -EEE
Q 031924 137 -FIN 139 (150)
Q Consensus 137 -~l~ 139 (150)
|++
T Consensus 529 qyv~ 532 (599)
T 1w6s_A 529 QYVA 532 (599)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 444
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00024 Score=48.79 Aligned_cols=132 Identities=10% Similarity=0.062 Sum_probs=73.7
Q ss_pred CeeecC--cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC----Ce-EEEEEcccccccc
Q 031924 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----GT-VLLYSWGYFKDCS 73 (150)
Q Consensus 1 i~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~-i~i~~~~~~~~~~ 73 (150)
|+|+|+ +..|+.+...+.|+.+|..+++.... .........++++++|+ |+.+... .. +..++.. +...
T Consensus 144 vavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~--~~~~ 219 (433)
T 4hw6_A 144 MMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA--SGFT 219 (433)
T ss_dssp EEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG--GTTC
T ss_pred EEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC--CCee
Confidence 467774 34455554448999999988765443 33455689999999999 5444432 12 3333321 1111
Q ss_pred --cccccccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeec-cCCCCcceeEEEEcCCccEE
Q 031924 74 --DRFVGLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLGIASVLCFI 138 (150)
Q Consensus 74 --~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l 138 (150)
..+.. ......+. .+ ++.++++-..++.|+.+|..++.....+ ..........++|+|++++|
T Consensus 220 ~~~~~~~--~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~L 287 (433)
T 4hw6_A 220 ERLSLCN--ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWA 287 (433)
T ss_dssp CEEEEEE--CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEE
T ss_pred ccccccc--cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEE
Confidence 11111 11122233 55 6677767667889999998766552222 11111113469999999833
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0003 Score=46.08 Aligned_cols=140 Identities=11% Similarity=0.024 Sum_probs=79.9
Q ss_pred eeec-CcceEEEEcC-----------------CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCCeEE
Q 031924 2 TFAA-DAMKLLGTSG-----------------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVL 62 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~ 62 (150)
++++ ++++.++-.. ++.|..||..+++...... .......++++++++.|+.+ +.++.|.
T Consensus 132 ~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~ 210 (322)
T 2fp8_A 132 TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIV 210 (322)
T ss_dssp EECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEE
T ss_pred EEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEE
Confidence 4667 7766665432 3678888877665432222 12334678999999866555 5668999
Q ss_pred EEEccccc-ccccccccccccceeEee-ecCCCEEEEecC----------CCcEEEEeccCCeeeeeccCCCC---ccee
Q 031924 63 LYSWGYFK-DCSDRFVGLSPNSVDALL-KLDEDRVITGSE----------NGLISLVGILPNRIIQPIAEHSE---YPIE 127 (150)
Q Consensus 63 i~~~~~~~-~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~----------dg~i~~~d~~~~~~~~~~~~~~~---~~i~ 127 (150)
+|++.... .....+.. .+. ...+. .++|++.++... .+.|..+|.. ++.+..+....+ ..+.
T Consensus 211 ~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~ 287 (322)
T 2fp8_A 211 KYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFE 287 (322)
T ss_dssp EEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCC
T ss_pred EEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccce
Confidence 99975211 01111111 122 34454 678887766544 4678888874 666655543221 1266
Q ss_pred EEEEcCCccEEEecccccc
Q 031924 128 SLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 128 ~~~~~~~~~~l~s~~~~~~ 146 (150)
.+++ .+++++++......
T Consensus 288 ~~~~-~~g~L~v~~~~~~~ 305 (322)
T 2fp8_A 288 QIQE-HDGLLYIGTLFHGS 305 (322)
T ss_dssp EEEE-ETTEEEEECSSCSE
T ss_pred EEEE-eCCEEEEeecCCCc
Confidence 6666 46776666544433
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00066 Score=44.88 Aligned_cols=145 Identities=6% Similarity=-0.050 Sum_probs=85.8
Q ss_pred eeecCcceEE-EEcCCCeEEEEEcCCCeeeee-ecc----CC--CcEEEEEE---EeCCCEEEeec-------------C
Q 031924 2 TFAADAMKLL-GTSGDGTLSVCNLRKNTVQTR-SEF----SE--EELTSVVL---MKNGRKVVCGS-------------Q 57 (150)
Q Consensus 2 ~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~-~~~----~~--~~v~~~~~---~~~~~~l~~~~-------------~ 57 (150)
+|++....+. +.-..++|..||...+..... +.. .+ .....+.| .|+++.+++.. .
T Consensus 19 ~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g 98 (334)
T 2p9w_A 19 IYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHG 98 (334)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSS
T ss_pred cCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCC
Confidence 5776444444 445899999999876543322 221 11 14689999 68887777543 2
Q ss_pred CCeEEEEEccc--ccccccccc--ccc---------c-cceeEee-ecCCCEEEEecCC-CcEEEEeccCCeeeeec--c
Q 031924 58 SGTVLLYSWGY--FKDCSDRFV--GLS---------P-NSVDALL-KLDEDRVITGSEN-GLISLVGILPNRIIQPI--A 119 (150)
Q Consensus 58 d~~i~i~~~~~--~~~~~~~~~--~~~---------~-~~v~~~~-~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~--~ 119 (150)
+..+..||+.- .++...... ... . .....+. .++|+..++++.- +.|..++...... ..+ .
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~-~~~~~~ 177 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV-STFAWE 177 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE-EEEEEC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE-eeeeec
Confidence 57788999850 123322221 100 1 1234455 7889999888887 8888777754322 221 1
Q ss_pred ---CCCCcceeEEEEcCCccEEEeccccccc
Q 031924 120 ---EHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 120 ---~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
.......+.++++|+|..|+.....+.+
T Consensus 178 ~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L 208 (334)
T 2p9w_A 178 SGNGGQRPGYSGITFDPHSNKLIAFGGPRAL 208 (334)
T ss_dssp CCCSSSCCSCSEEEEETTTTEEEEESSSSSE
T ss_pred CCCcccccCcceEEEeCCCCEEEEEcCCCeE
Confidence 1111236789999999877665445544
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00076 Score=49.50 Aligned_cols=111 Identities=10% Similarity=-0.015 Sum_probs=61.2
Q ss_pred CeeecCcceEEEEcCC-----CeEEEEEcCCCee--eeeec-cCCCcEEEEEEEeCCCEEEeec---CCCeEEEEEcccc
Q 031924 1 MTFAADAMKLLGTSGD-----GTLSVCNLRKNTV--QTRSE-FSEEELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYF 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~~~~~~ 69 (150)
+.|+||++.|+....+ ..|..+++.++.. ..... ........+.|+|||++|+... ....+.++|+...
T Consensus 226 ~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 226 IVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp CEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 4799999888776654 3688888877532 11222 2234567889999999887554 2346777787532
Q ss_pred cccc--cccccccccceeEeeecCCCEE-EEecCC----CcEEEEeccC
Q 031924 70 KDCS--DRFVGLSPNSVDALLKLDEDRV-ITGSEN----GLISLVGILP 111 (150)
Q Consensus 70 ~~~~--~~~~~~~~~~v~~~~~~~~~~l-~~~~~d----g~i~~~d~~~ 111 (150)
.... ..+...............++.| +....+ ..|..+++.+
T Consensus 306 ~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 306 NAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp TTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 1112 2232202233333331335544 444333 2566667654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00035 Score=50.59 Aligned_cols=71 Identities=10% Similarity=0.169 Sum_probs=49.4
Q ss_pred eeecCcceEEEEcCCC-------------------eEEEEEcCCCeeeeeecc--CC-------CcEEEEEEEeCCC---
Q 031924 2 TFAADAMKLLGTSGDG-------------------TLSVCNLRKNTVQTRSEF--SE-------EELTSVVLMKNGR--- 50 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~-------------------~i~i~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~--- 50 (150)
+++|+...++.+..++ .|..+|.++++.+...+. |. .+.....+..+|+
T Consensus 236 a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~ 315 (668)
T 1kv9_A 236 AYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRK 315 (668)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE
T ss_pred EEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEE
Confidence 4567777888887766 499999999998866653 21 2333334445665
Q ss_pred EEEeecCCCeEEEEEcccccccc
Q 031924 51 KVVCGSQSGTVLLYSWGYFKDCS 73 (150)
Q Consensus 51 ~l~~~~~d~~i~i~~~~~~~~~~ 73 (150)
.++.++.+|.++++|.. .++.+
T Consensus 316 ~v~~~~~~G~l~~lD~~-tG~~l 337 (668)
T 1kv9_A 316 VLMQAPKNGFFYVLDRT-NGKLI 337 (668)
T ss_dssp EEEECCTTSEEEEEETT-TCCEE
T ss_pred EEEEECCCCEEEEEECC-CCCEe
Confidence 68899999999999975 44444
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0013 Score=41.98 Aligned_cols=139 Identities=8% Similarity=0.082 Sum_probs=81.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCee---eeeec------cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc--
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV---QTRSE------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-- 69 (150)
|++.+++.++++.-.++.+.++++..... ..... ........++|+|.++.|+++.......+|.+...
T Consensus 75 Ia~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~ 154 (255)
T 3qqz_A 75 IEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS 154 (255)
T ss_dssp EEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC
T ss_pred eEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc
Confidence 35667777666666778899998765432 12221 12345789999999888877766655566665310
Q ss_pred ccccccc-----cc-ccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCC--------cceeEEEEcC
Q 031924 70 KDCSDRF-----VG-LSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSE--------YPIESLGIAS 133 (150)
Q Consensus 70 ~~~~~~~-----~~-~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--------~~i~~~~~~~ 133 (150)
......+ .. ........+. .| .+++++....+..+..+|.. ++.+..+.-..+ .....|+|++
T Consensus 155 ~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~ 233 (255)
T 3qqz_A 155 SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA 233 (255)
T ss_dssp SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT
T ss_pred CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC
Confidence 0111111 00 0111234444 44 55677777778888889975 444443322111 1378899999
Q ss_pred CccEEEe
Q 031924 134 VLCFINS 140 (150)
Q Consensus 134 ~~~~l~s 140 (150)
+|++.++
T Consensus 234 ~G~lyIv 240 (255)
T 3qqz_A 234 SGNIYIV 240 (255)
T ss_dssp TCCEEEE
T ss_pred CCCEEEE
Confidence 9997766
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0024 Score=42.58 Aligned_cols=134 Identities=11% Similarity=-0.079 Sum_probs=75.3
Q ss_pred CeeecCcceEEEE-cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEccccccccccc-c
Q 031924 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRF-V 77 (150)
Q Consensus 1 i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~-~ 77 (150)
++|++.+..|+.+ ...+.|..+++..+...............+++.+.+..| ++-...+.|.+.++. +.....+ .
T Consensus 78 l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d--G~~~~~l~~ 155 (349)
T 3v64_C 78 LDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD--GAHRKVLLW 155 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEC
T ss_pred EEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC--CCceEEEEe
Confidence 3577655555544 467788888887654333333333445788998755444 555567889999875 2222222 1
Q ss_pred cccccceeEee-ecC-CCEEEEecCC-CcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEE
Q 031924 78 GLSPNSVDALL-KLD-EDRVITGSEN-GLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFI 138 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~-~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (150)
. .......+. .|. +.++.+-... +.|..+++........+...-. ....++++|++..|
T Consensus 156 ~-~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~-~PnGla~d~~~~~l 217 (349)
T 3v64_C 156 Q-SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLF-WPNGLTIDYAGRRM 217 (349)
T ss_dssp T-TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCS-CEEEEEEETTTTEE
T ss_pred C-CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCC-CcceEEEeCCCCEE
Confidence 2 223345555 664 4455555555 7888888754322222222222 36789999755433
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0027 Score=42.91 Aligned_cols=134 Identities=12% Similarity=-0.068 Sum_probs=74.5
Q ss_pred CeeecCcceEEEE-cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEccccccccccc-c
Q 031924 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRF-V 77 (150)
Q Consensus 1 i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~-~ 77 (150)
++|++.+..|+.+ ...+.|..+++..+.....+.........+++.+.+..| ++-...+.|.+.++. +.....+ .
T Consensus 121 l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d--g~~~~~l~~ 198 (386)
T 3v65_B 121 LDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD--GAHRKVLLW 198 (386)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT--SCSCEEEEC
T ss_pred EEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC--CCceEEeec
Confidence 3577655544444 467788888887664433333333445778888755544 555566788888874 2222222 2
Q ss_pred cccccceeEee-ecCCC-EEEEecCC-CcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEE
Q 031924 78 GLSPNSVDALL-KLDED-RVITGSEN-GLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFI 138 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~-~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (150)
. .......+. .+.+. ++.+-... +.|..+++............-. ....++++|++..|
T Consensus 199 ~-~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~-~PnGlavd~~~~~l 260 (386)
T 3v65_B 199 Q-SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLF-WPNGLTIDYAGRRM 260 (386)
T ss_dssp S-SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS-CEEEEEEEGGGTEE
T ss_pred C-CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCC-CeeeEEEeCCCCEE
Confidence 2 223345555 65444 44554445 7888888754322222222222 36789999755433
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00097 Score=48.14 Aligned_cols=111 Identities=13% Similarity=-0.009 Sum_probs=66.9
Q ss_pred eeec-CcceEEEEcCCC-----------eEEEEEcCCCeee--eeec-cCCCcEEEEEEEeCCCEEEeecC-CCeEEEEE
Q 031924 2 TFAA-DAMKLLGTSGDG-----------TLSVCNLRKNTVQ--TRSE-FSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYS 65 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~-----------~i~i~d~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~~ 65 (150)
++.| +++.++.|+.+. .+.+||..+++.. .... .+.....++++..+++.++.|+. +..+.+||
T Consensus 192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd 271 (656)
T 1k3i_A 192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD 271 (656)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEec
Confidence 3456 777888776432 6889999887532 2222 12223345677788999999884 46899999
Q ss_pred ccccc-ccccccccccccceeEeeecCCCEEEEec-CC-----CcEEEEeccCCe
Q 031924 66 WGYFK-DCSDRFVGLSPNSVDALLKLDEDRVITGS-EN-----GLISLVGILPNR 113 (150)
Q Consensus 66 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~d-----g~i~~~d~~~~~ 113 (150)
..... .....+.. ......+...+++++++.|+ .+ ..+.+||+.+++
T Consensus 272 ~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 272 SSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp GGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred CcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 85321 11122221 11111222245889999988 34 468999987654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00078 Score=48.63 Aligned_cols=124 Identities=10% Similarity=-0.075 Sum_probs=67.5
Q ss_pred CeEEEEEcCCCeeeeeeccC---------CCcEEEEEEEe-CCCEEEeecCCC-----------eEEEEEccccccccc-
Q 031924 17 GTLSVCNLRKNTVQTRSEFS---------EEELTSVVLMK-NGRKVVCGSQSG-----------TVLLYSWGYFKDCSD- 74 (150)
Q Consensus 17 ~~i~i~d~~~~~~~~~~~~~---------~~~v~~~~~~~-~~~~l~~~~~d~-----------~i~i~~~~~~~~~~~- 74 (150)
..+..||.++.......... ...-.++.+.. +++.++.|+.++ .+.+||.... ....
T Consensus 369 ~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~-~W~~~ 447 (656)
T 1k3i_A 369 TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS-PNTVF 447 (656)
T ss_dssp SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC-CEEEE
T ss_pred cceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC-CeeEE
Confidence 45678888776533221111 11223444443 677778887532 5777776432 2211
Q ss_pred ---ccccccccceeEeeecCCCEEEEecCC-----------CcEEEEeccCCeee--eeccCCCCcceeEEEEcCCccEE
Q 031924 75 ---RFVGLSPNSVDALLKLDEDRVITGSEN-----------GLISLVGILPNRII--QPIAEHSEYPIESLGIASVLCFI 138 (150)
Q Consensus 75 ---~~~~~~~~~v~~~~~~~~~~l~~~~~d-----------g~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l 138 (150)
.+.. ......++..+++++++.|+.+ ..+.+||+.+.+-. ..+..... ......+.|+|+++
T Consensus 448 ~~~~mp~-~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~-~hs~a~ll~dg~v~ 525 (656)
T 1k3i_A 448 ASNGLYF-ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRV-YHSISLLLPDGRVF 525 (656)
T ss_dssp CTTCCSS-CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCC-TTEEEEECTTSCEE
T ss_pred ccCCCCC-CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccc-cccHhhcCCCcEEE
Confidence 2221 1111222336689999998854 46899999776532 22211111 13345567999999
Q ss_pred Eeccc
Q 031924 139 NSGFL 143 (150)
Q Consensus 139 ~s~~~ 143 (150)
+.|+.
T Consensus 526 v~GG~ 530 (656)
T 1k3i_A 526 NGGGG 530 (656)
T ss_dssp EEECC
T ss_pred ecCCC
Confidence 99884
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0049 Score=42.30 Aligned_cols=146 Identities=10% Similarity=0.049 Sum_probs=82.2
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCeeeeeec-cCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEcccc-ccc--cc
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYF-KDC--SD 74 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~-~~~--~~ 74 (150)
++++| ++.++++-..++.|..++...+....... ........++|+|+|++| ++-..++.|..++.... +.. ..
T Consensus 231 iavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~ 310 (430)
T 3tc9_A 231 AETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPY 310 (430)
T ss_dssp EEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCE
T ss_pred EEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceE
Confidence 35788 56666666678899999998765422222 222356899999999955 45556788999886421 111 11
Q ss_pred cccccc------c---------ccee-Eee-e--------cCCCEEEEecCCCcEEEEeccCCeeeeeccC----C----
Q 031924 75 RFVGLS------P---------NSVD-ALL-K--------LDEDRVITGSENGLISLVGILPNRIIQPIAE----H---- 121 (150)
Q Consensus 75 ~~~~~~------~---------~~v~-~~~-~--------~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----~---- 121 (150)
.+.+ . . .... .++ . .+++++++-..++.|+.++. .++....... .
T Consensus 311 ~~ag-~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~ 388 (430)
T 3tc9_A 311 IVCG-QQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYN 388 (430)
T ss_dssp EEEE-CTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCB
T ss_pred EEec-cCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCccc
Confidence 1111 1 0 0011 122 1 23556666666778888884 4543322211 0
Q ss_pred CC--------cceeEEEEcC-CccEEEecccccccc
Q 031924 122 SE--------YPIESLGIAS-VLCFINSGFLSLNVN 148 (150)
Q Consensus 122 ~~--------~~i~~~~~~~-~~~~l~s~~~~~~v~ 148 (150)
.+ .....++++| ++.++++-..+..|.
T Consensus 389 dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr 424 (430)
T 3tc9_A 389 DGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIR 424 (430)
T ss_dssp CEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred CCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 00 1277899999 577777655555443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0029 Score=42.23 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=40.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCee--eeeec---cCCCcEEEEEEEeC---CCEEEeecC-C-----CeEEEEEc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSE---FSEEELTSVVLMKN---GRKVVCGSQ-S-----GTVLLYSW 66 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----~~i~i~~~ 66 (150)
|+|.|+++++++ ..++.|.+++ .++. +..+. ........++++|+ +..|++... + +.|..|+.
T Consensus 36 ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~ 112 (352)
T 2ism_A 36 LAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRH 112 (352)
T ss_dssp EEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEE
T ss_pred EEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEe
Confidence 578899985555 4669999998 4432 11111 12456899999998 555554433 2 56777776
Q ss_pred c
Q 031924 67 G 67 (150)
Q Consensus 67 ~ 67 (150)
.
T Consensus 113 ~ 113 (352)
T 2ism_A 113 L 113 (352)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0055 Score=39.86 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=63.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC--CeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~ 78 (150)
++|+++++++++-..++.|..||.... ...... .......+++.++|+.+++.... ..+..++.. .++.. .+..
T Consensus 37 ia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~-~g~~~-~~~~ 112 (306)
T 2p4o_A 37 LASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS-DGTVE-TLLT 112 (306)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT-TSCEE-EEEE
T ss_pred EEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCC-CCeEE-EEEe
Confidence 468888887777668899999998754 333222 23578899999999866554332 246666643 22322 1111
Q ss_pred -ccccceeEee-ecCCCEEEEecCCCcEEEEeccCC
Q 031924 79 -LSPNSVDALL-KLDEDRVITGSENGLISLVGILPN 112 (150)
Q Consensus 79 -~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~ 112 (150)
.......... .+.+..+++-..++.|+.+|...+
T Consensus 113 ~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 113 LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred CCCccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence 0111112222 334444555556889999998654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0059 Score=40.03 Aligned_cols=133 Identities=9% Similarity=-0.022 Sum_probs=72.2
Q ss_pred CeeecCcceEEEE-cCCCeEEEEEcCC----CeeeeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEccccccccc
Q 031924 1 MTFAADAMKLLGT-SGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSD 74 (150)
Q Consensus 1 i~~~~~~~~l~~~-~~d~~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~ 74 (150)
++|++++..|+.+ ...+.|..+++.. ......+.........+++.+.+..| ++-..++.|.++++. +....
T Consensus 35 ~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~--g~~~~ 112 (316)
T 1ijq_A 35 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRK 112 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEE
T ss_pred EEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC--CCceE
Confidence 3677765555544 4678999999875 22222222223455788998755544 555667899999975 22222
Q ss_pred cc-ccccccceeEee-ecCCC-EEEEecCC-CcEEEEeccCCeeeeec-cCCCCcceeEEEEcCCccEE
Q 031924 75 RF-VGLSPNSVDALL-KLDED-RVITGSEN-GLISLVGILPNRIIQPI-AEHSEYPIESLGIASVLCFI 138 (150)
Q Consensus 75 ~~-~~~~~~~v~~~~-~~~~~-~l~~~~~d-g~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l 138 (150)
.+ .. .......+. .+.+. ++.+.... +.|...++.. .....+ ...-. ....+++++++..|
T Consensus 113 ~~~~~-~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~-~P~gla~d~~~~~l 178 (316)
T 1ijq_A 113 TLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQ-WPNGITLDLLSGRL 178 (316)
T ss_dssp EEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCS-CEEEEEEETTTTEE
T ss_pred EEEEC-CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCC-CceEEEEeccCCEE
Confidence 22 21 223344555 66444 44444333 6888888753 322222 12223 37789999865443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0062 Score=39.61 Aligned_cols=128 Identities=9% Similarity=-0.007 Sum_probs=72.7
Q ss_pred cceEEEEcCCCeEEEEEcCCCee-eeee---------ccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEccccccc--c
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNTV-QTRS---------EFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDC--S 73 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~~-~~~~---------~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~--~ 73 (150)
+..+++-..++.|..+|...++. +... .......+.+ +++++.|+.+ ...+.|..|++...+.. .
T Consensus 128 ~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~ 205 (306)
T 2p4o_A 128 TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP 205 (306)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC
T ss_pred CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc
Confidence 33444444688899999876431 1100 0111244555 8888766544 56789999998532221 1
Q ss_pred cccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCee--eeeccCCCCcceeEEEEc---CCccEEEe
Q 031924 74 DRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRI--IQPIAEHSEYPIESLGIA---SVLCFINS 140 (150)
Q Consensus 74 ~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~---~~~~~l~s 140 (150)
..+.. ......++ .++|+++++....+.|.+++.. ++. +..+..... ...+++|. |++..|..
T Consensus 206 ~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~-~p~~~a~~g~~~d~~~LyV 274 (306)
T 2p4o_A 206 EIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVI-GSTAVAFGQTEGDCTAIYV 274 (306)
T ss_dssp EEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCT-TEEEEEECCSTTTTTEEEE
T ss_pred EEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccC-CceEEEEecccCCCCEEEE
Confidence 11111 11122333 6788887777778899999975 544 223332223 38899998 88654443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0091 Score=41.05 Aligned_cols=145 Identities=8% Similarity=-0.005 Sum_probs=82.0
Q ss_pred Ceeec-CcceEEEEcCCCeEEEEEcCCCeeeeeec--cCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEcccc-ccc--c
Q 031924 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYF-KDC--S 73 (150)
Q Consensus 1 i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~-~~~--~ 73 (150)
++++| ++.+.++-..++.|+.+|..++.....+. .....-..++++|++++|+ +-...+.|+.++.... +.. .
T Consensus 233 iavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~ 312 (433)
T 4hw6_A 233 CAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVP 312 (433)
T ss_dssp CEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCC
T ss_pred EEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcE
Confidence 46778 56555555678899999988775522221 1122335799999998655 4456688999886421 111 0
Q ss_pred ccccccc---------------ccceeEee----------ecCCCEEEEecCCCcEEEEeccCCeeeeeccCC-------
Q 031924 74 DRFVGLS---------------PNSVDALL----------KLDEDRVITGSENGLISLVGILPNRIIQPIAEH------- 121 (150)
Q Consensus 74 ~~~~~~~---------------~~~v~~~~----------~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------- 121 (150)
..+.+ . -.....++ ..+++++++-..++.|+.++. ++.........
T Consensus 313 ~~~ag-~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~ 390 (433)
T 4hw6_A 313 YIVCG-QHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGY 390 (433)
T ss_dssp EEEEE-CTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCC
T ss_pred EEEEe-cCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCcccc
Confidence 11111 1 00112222 234566666667788998885 44433222110
Q ss_pred ----------CCcceeEEEEc-CCccEEEecccccccc
Q 031924 122 ----------SEYPIESLGIA-SVLCFINSGFLSLNVN 148 (150)
Q Consensus 122 ----------~~~~i~~~~~~-~~~~~l~s~~~~~~v~ 148 (150)
-. ....++++ ++|.++++=..+..|.
T Consensus 391 ~dG~~~~~~~~~-~P~giavd~~~g~lyVaD~~n~rIr 427 (433)
T 4hw6_A 391 VDGELRSQALFN-HPTSIAYDMKRKCFYIGDCDNHRVR 427 (433)
T ss_dssp BCEETTTTCBCS-SEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred CCCccccccEeC-CCcEEEEECCCCEEEEEeCCCCEEE
Confidence 01 26789999 7888777655554443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0088 Score=42.62 Aligned_cols=55 Identities=9% Similarity=0.023 Sum_probs=35.6
Q ss_pred eEEEEEcCCCeeeeeeccC--C-------CcEEEEEEEeCCC---EEEeecCCCeEEEEEcccccccc
Q 031924 18 TLSVCNLRKNTVQTRSEFS--E-------EELTSVVLMKNGR---KVVCGSQSGTVLLYSWGYFKDCS 73 (150)
Q Consensus 18 ~i~i~d~~~~~~~~~~~~~--~-------~~v~~~~~~~~~~---~l~~~~~d~~i~i~~~~~~~~~~ 73 (150)
.|..+|.++++.+...+.. . ....-+....+|+ .++.++.+|.+.++|.. .++.+
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~-tG~~~ 339 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE-NGNLI 339 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT-TCCEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECC-CCCEE
Confidence 6999999999887665422 1 1111223335674 56788899999999975 34443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0097 Score=39.79 Aligned_cols=131 Identities=13% Similarity=0.156 Sum_probs=77.1
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC----CCE---EEeec-C--CCeEEEEEcccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN----GRK---VVCGS-Q--SGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~~---l~~~~-~--d~~i~i~~~~~~~~~~~~ 75 (150)
...+++.....+-+.+||+ +++.+..+.. +.++.+..-|+ |+. +++.. . +++|.+|++......+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4456666678889999999 7878777653 56777766663 332 23333 3 579999977311122222
Q ss_pred cccc------ccccee--Eee-ec-CCC-EEEEecCCCcEEEEecc-------CCeeeeeccCCCCcceeEEEEcCCccE
Q 031924 76 FVGL------SPNSVD--ALL-KL-DED-RVITGSENGLISLVGIL-------PNRIIQPIAEHSEYPIESLGIASVLCF 137 (150)
Q Consensus 76 ~~~~------~~~~v~--~~~-~~-~~~-~l~~~~~dg~i~~~d~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~ 137 (150)
+... ....+. |+. ++ .+. +++....+|.+..|++. +.+.++.+... . .+..+..++....
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-s-q~EgcvvDd~~g~ 193 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-S-QTEGMAADDEYGR 193 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-S-CEEEEEEETTTTE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-C-CcceEEEcCCCCe
Confidence 2110 102222 332 44 343 67778888999999883 23456666443 3 3777777776555
Q ss_pred EEec
Q 031924 138 INSG 141 (150)
Q Consensus 138 l~s~ 141 (150)
|..+
T Consensus 194 Lyv~ 197 (355)
T 3amr_A 194 LYIA 197 (355)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.01 Score=40.06 Aligned_cols=136 Identities=9% Similarity=-0.062 Sum_probs=72.9
Q ss_pred eeecCcc-eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec-CC-CeEEEEEccccccccccccc
Q 031924 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QS-GTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 2 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~i~~~~~~~~~~~~~~~ 78 (150)
++++.+. +.++-...+.|.+.++........+.........+++.|.+..|+... .+ +.|..+++. +.....+..
T Consensus 165 avd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~ 242 (386)
T 3v65_B 165 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIAD 242 (386)
T ss_dssp EEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEEC
T ss_pred EEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEEEE
Confidence 4565444 444445667888888765433333333445678999998766665444 34 678888874 333222221
Q ss_pred ccccceeEee-ec-CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEec
Q 031924 79 LSPNSVDALL-KL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 79 ~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
..-.....++ .+ .++++++-+..+.|..+++........+..... ....+++. ++.++.+-
T Consensus 243 ~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~P~giav~-~~~ly~td 305 (386)
T 3v65_B 243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITVF-EDSLYWTD 305 (386)
T ss_dssp SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCS-SEEEEEEE-TTEEEEEE
T ss_pred CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCC-CceEEEEE-CCEEEEee
Confidence 0222344555 65 444555556678899998864322222222222 25566663 34444443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.41 E-value=0.013 Score=39.87 Aligned_cols=135 Identities=10% Similarity=-0.023 Sum_probs=73.2
Q ss_pred CeeecCcceEEEE-cCCCeEEEEEcCCC----eeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccccccc
Q 031924 1 MTFAADAMKLLGT-SGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSD 74 (150)
Q Consensus 1 i~~~~~~~~l~~~-~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~ 74 (150)
|+|++.+..|+.+ ...+.|+.+++... .....+.........+++.+. ++..++-...+.|.+.++. +....
T Consensus 117 l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~--g~~~~ 194 (400)
T 3p5b_L 117 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRK 194 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT--TCSEE
T ss_pred EeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC--CCceE
Confidence 4677755555544 45678888887652 122223334456788999975 4444555667889998875 22222
Q ss_pred c-cccccccceeEee-ecCCCEE-EEecC-CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEE
Q 031924 75 R-FVGLSPNSVDALL-KLDEDRV-ITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 75 ~-~~~~~~~~v~~~~-~~~~~~l-~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (150)
. +.. .......+. .+.+..| .+-.. .+.|...++........+...-. ....+++++++..|.
T Consensus 195 ~l~~~-~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~-~P~glavd~~~~~lY 261 (400)
T 3p5b_L 195 TLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-WPNGITLDLLSGRLY 261 (400)
T ss_dssp EEEEC-SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCS-CEEEEEEETTTTEEE
T ss_pred EEEeC-CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCC-ceEEEEEEeCCCEEE
Confidence 2 222 223345555 6644444 44333 46888888854332222222223 377889997655443
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.012 Score=39.26 Aligned_cols=65 Identities=12% Similarity=0.076 Sum_probs=40.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe-eeeeec---cCCCcEEEEEEEeC---CCEEEeecC----C----CeEEEEE
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSE---FSEEELTSVVLMKN---GRKVVCGSQ----S----GTVLLYS 65 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----~~i~i~~ 65 (150)
|+|.|+++++++ ..++.|.+++ ..++ .+..+. ........++++|+ +..|++... + ..|..|+
T Consensus 34 ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~ 111 (354)
T 3a9g_A 34 IAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGR 111 (354)
T ss_dssp EEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEE
T ss_pred EEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEE
Confidence 578899985555 4669999997 4454 222211 12356899999997 555544432 2 5666676
Q ss_pred cc
Q 031924 66 WG 67 (150)
Q Consensus 66 ~~ 67 (150)
..
T Consensus 112 ~~ 113 (354)
T 3a9g_A 112 LD 113 (354)
T ss_dssp EC
T ss_pred EC
Confidence 54
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.013 Score=37.43 Aligned_cols=134 Identities=7% Similarity=0.059 Sum_probs=80.8
Q ss_pred CeeecCcceEE-EEcCCCeEEEEEcCCCeeeeeecc-CCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc--ccccc
Q 031924 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDRF 76 (150)
Q Consensus 1 i~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~ 76 (150)
++|+|+++.|+ +...++.|..+|.. ++.+..+.. -......+++.+++.++++.-.++.+.++++...+. .....
T Consensus 32 la~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~ 110 (255)
T 3qqz_A 32 LTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKI 110 (255)
T ss_dssp EEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred eEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeee
Confidence 47888766555 56688999999998 777766532 235678999998888777766778899988754332 11111
Q ss_pred c-----cccccceeEee-ecCCCEEEEecCCCcEEEEecc---CCeeeeec-------cCCCCcceeEEEEcCCcc
Q 031924 77 V-----GLSPNSVDALL-KLDEDRVITGSENGLISLVGIL---PNRIIQPI-------AEHSEYPIESLGIASVLC 136 (150)
Q Consensus 77 ~-----~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~---~~~~~~~~-------~~~~~~~i~~~~~~~~~~ 136 (150)
. .........++ .+.++.|.++.+.....+|... ....+..+ ..+.. .+..++++|...
T Consensus 111 ~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~-d~S~l~~dp~tg 185 (255)
T 3qqz_A 111 KIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD-DVSGAEFNQQKN 185 (255)
T ss_dssp ECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS-CCCEEEEETTTT
T ss_pred ccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccC-CceeEEEcCCCC
Confidence 1 10233346677 7777666666665555555543 11111111 01112 377888888543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.017 Score=38.52 Aligned_cols=135 Identities=9% Similarity=-0.072 Sum_probs=73.0
Q ss_pred eeecCcc-eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCC-CeEEEEEccccccccccccc
Q 031924 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQS-GTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 2 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d-~~i~i~~~~~~~~~~~~~~~ 78 (150)
++++.+. +.++-...+.|.+.++..................+++.|.+..++ +-..+ +.|..+++. +.....+..
T Consensus 122 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~ 199 (349)
T 3v64_C 122 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIAD 199 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEESCC
T ss_pred EEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCCcEEEEE
Confidence 5565444 444555677888888875433333333345678999998665554 44444 788888875 332222211
Q ss_pred ccccceeEee-ecCC-CEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 79 LSPNSVDALL-KLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
..-.....++ .+++ ++.++-...+.|..+++........+..... ....+++. ++.++.+
T Consensus 200 ~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~P~giav~-~~~ly~t 261 (349)
T 3v64_C 200 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITVF-EDSLYWT 261 (349)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-SEEEEEEE-TTEEEEE
T ss_pred CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCC-CceEEEEE-CCEEEEe
Confidence 0223344555 6544 4555555677899999864322222222222 25566663 3444443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0076 Score=37.70 Aligned_cols=133 Identities=8% Similarity=-0.105 Sum_probs=71.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee------eeec--cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc-
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ------TRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD- 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~- 71 (150)
++|+|++.+.++ .+|.+.-.+..+.... ..+- +.. ...++.|.|+|.+.++ .||.|+-++..+.+.
T Consensus 46 laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~ 120 (236)
T 1tl2_A 46 LFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTD 120 (236)
T ss_dssp EEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC
T ss_pred EEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCC
Confidence 578998886666 6677777776542211 1110 111 2478899999987777 569888777532211
Q ss_pred -cccc--cccc-cccceeEee-ecCCCEEEEecCCCcEEEEeccCCe------eeeeccCCCC-cceeEEEEcCCccEEE
Q 031924 72 -CSDR--FVGL-SPNSVDALL-KLDEDRVITGSENGLISLVGILPNR------IIQPIAEHSE-YPIESLGIASVLCFIN 139 (150)
Q Consensus 72 -~~~~--~~~~-~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~------~~~~~~~~~~-~~i~~~~~~~~~~~l~ 139 (150)
.+.. ..+. .-..+..+. .|+|.+.+.. |+.++-.....+. ....+ .+.+ ..-+.+.|.++|.+.+
T Consensus 121 ~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~-g~~g~~~yr~l~f~~~G~l~~ 197 (236)
T 1tl2_A 121 NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKI-GQGGWDTFKFLFFSSVGTLFG 197 (236)
T ss_dssp CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEE-ESSSGGGEEEEEECTTSCEEE
T ss_pred ceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCccccccccee-ccCCcceEEEEEECCCCcEEE
Confidence 1111 1110 013456666 7788777766 7775433222111 01111 1111 1244567899998776
Q ss_pred ec
Q 031924 140 SG 141 (150)
Q Consensus 140 s~ 141 (150)
..
T Consensus 198 v~ 199 (236)
T 1tl2_A 198 VQ 199 (236)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.015 Score=41.59 Aligned_cols=55 Identities=9% Similarity=0.052 Sum_probs=36.5
Q ss_pred CeEEEEEcCCCeeeeeecc--CC--------CcEEEEEEE-eCCC---EEEeecCCCeEEEEEcccccccc
Q 031924 17 GTLSVCNLRKNTVQTRSEF--SE--------EELTSVVLM-KNGR---KVVCGSQSGTVLLYSWGYFKDCS 73 (150)
Q Consensus 17 ~~i~i~d~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~---~l~~~~~d~~i~i~~~~~~~~~~ 73 (150)
+.|..+|.++++.+...+. |. .++. +... .+|+ .++.++.+|.++++|.+ .++.+
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~-tG~~l 359 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRS-NGKLQ 359 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETT-TCCEE
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECC-CCCEe
Confidence 6899999999998876543 21 1221 1221 3564 67889999999999974 34443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.022 Score=38.08 Aligned_cols=67 Identities=9% Similarity=0.125 Sum_probs=41.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee--eee----ccCCCcEEEEEEEeC---CCEEEee---cCCCeEEEEEcc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRS----EFSEEELTSVVLMKN---GRKVVCG---SQSGTVLLYSWG 67 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~----~~~~~~v~~~~~~~~---~~~l~~~---~~d~~i~i~~~~ 67 (150)
|+|.|+++++++--..|.|++++...++.. ..+ .........++++|+ +..|... ..++.|.-|...
T Consensus 37 ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~ 115 (347)
T 3das_A 37 LAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYD 115 (347)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBC
T ss_pred EEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeC
Confidence 578899987777755899999987655432 211 122456899999985 3444432 234455555543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.029 Score=38.85 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=35.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee--eeecc------CCCcEEEEEEEeC---CCEEEee
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRSEF------SEEELTSVVLMKN---GRKVVCG 55 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~------~~~~v~~~~~~~~---~~~l~~~ 55 (150)
|+|.|+++++++-...+.|.+++...++.. ..+.. ....+..++|+|+ +..|...
T Consensus 32 ~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 32 LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred EEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 578899987777655557888886655432 22221 2456789999995 5555444
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0023 Score=46.68 Aligned_cols=133 Identities=9% Similarity=-0.040 Sum_probs=67.0
Q ss_pred CeeecCcceEEEEc-CCCeEEEEEcCC----CeeeeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEccccccccc
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSD 74 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~ 74 (150)
|+|++.+..|+.+. ..+.|+.+++.. ......+.........+++.+. ++.+++-...+.|.++++. +....
T Consensus 411 la~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d--g~~~~ 488 (699)
T 1n7d_A 411 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRK 488 (699)
T ss_dssp CEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS--SCCEE
T ss_pred EccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC--CCceE
Confidence 46777666666554 567888888875 2222222222223456788754 4444555567889998875 22222
Q ss_pred ccccccccceeEee-ecC-CCEEEEecCC-CcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc
Q 031924 75 RFVGLSPNSVDALL-KLD-EDRVITGSEN-GLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC 136 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~-~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (150)
.+..........++ .+. +.++++-... +.|..+++........+...-. ....|+|+|++.
T Consensus 489 ~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~-~PnGlavd~~~~ 552 (699)
T 1n7d_A 489 TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-WPNGITLDLLSG 552 (699)
T ss_dssp EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS-SCCCEEECTTTC
T ss_pred EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC-CccEEEEeccCC
Confidence 22110112223344 554 4444443333 6788777743222111111112 256788988644
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.021 Score=37.92 Aligned_cols=106 Identities=8% Similarity=0.007 Sum_probs=70.6
Q ss_pred ecCcceEEEEc-------------CCCeEEEEEcC---CCeeeeeec--c-----------CCCcEEEEEEEeCCCEEEe
Q 031924 4 AADAMKLLGTS-------------GDGTLSVCNLR---KNTVQTRSE--F-----------SEEELTSVVLMKNGRKVVC 54 (150)
Q Consensus 4 ~~~~~~l~~~~-------------~d~~i~i~d~~---~~~~~~~~~--~-----------~~~~v~~~~~~~~~~~l~~ 54 (150)
.|+++++++.. .+..|..||+. +++.+.... . .......++..++|+..++
T Consensus 74 D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt 153 (334)
T 2p9w_A 74 DNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA 153 (334)
T ss_dssp SSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE
T ss_pred CCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe
Confidence 57777777543 36789999999 776554332 1 1124789999999999898
Q ss_pred ecCC-CeEEEEEcccccccccccc-c----ccccceeEee-ecCCCEEEEecCCCcEEEEeccC
Q 031924 55 GSQS-GTVLLYSWGYFKDCSDRFV-G----LSPNSVDALL-KLDEDRVITGSENGLISLVGILP 111 (150)
Q Consensus 55 ~~~d-~~i~i~~~~~~~~~~~~~~-~----~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~ 111 (150)
++.. +.|..++.. ++....+. . ......+.+. .|+++.|++....|.+..+|+..
T Consensus 154 ~s~~~~~I~rV~pd--G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 154 FALGMPAIARVSAD--GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEESSCEEEEECTT--SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCCCCCeEEEEeCC--CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 8887 887777754 33222211 0 0112244566 78998888877799999999874
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.023 Score=37.91 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=33.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeee---ee----ccCCCcEEEEEEEeC---CCEEEee
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT---RS----EFSEEELTSVVLMKN---GRKVVCG 55 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~----~~~~~~v~~~~~~~~---~~~l~~~ 55 (150)
|+|.|+++.++++...|.|++++.. ++... .+ .........++++|+ +..|...
T Consensus 23 i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~ 86 (353)
T 2g8s_A 23 LAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS 86 (353)
T ss_dssp EEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred EEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence 5789999834445567899999853 33211 11 112346789999996 4445443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.066 Score=39.83 Aligned_cols=133 Identities=9% Similarity=-0.040 Sum_probs=70.4
Q ss_pred eeecCcceEE-EEcCCCeEEEEEcCCC----eeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEcccccccccc
Q 031924 2 TFAADAMKLL-GTSGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 2 ~~~~~~~~l~-~~~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
+|++.+..|+ +-...+.|+.+++... .....+.........+++.+.++.|+ +-...+.|.+.++. +.....
T Consensus 430 ~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld--G~~~~~ 507 (791)
T 3m0c_C 430 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKT 507 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEE
T ss_pred eecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC--CCeEEE
Confidence 4565444444 4445667777777642 12222232344567899988765554 55567899999985 333333
Q ss_pred cccccccceeEee-ecC-CCEEEEecCC-CcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccE
Q 031924 76 FVGLSPNSVDALL-KLD-EDRVITGSEN-GLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCF 137 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~-~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 137 (150)
+..........++ .+. +.++.+-..+ +.|...++........+...-. ....|++++.+..
T Consensus 508 l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~-~P~GLavD~~~~~ 571 (791)
T 3m0c_C 508 LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-WPNGITLDLLSGR 571 (791)
T ss_dssp EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS-CEEEEEEETTTTE
T ss_pred EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCC-CceEEEEecCCCe
Confidence 3210223345565 665 4444444333 6788888854333222222223 3778888865443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.023 Score=39.07 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=49.4
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCee------------e--eeecc----CCCcEEEEEEEeC---CCEEEeecCCCe
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV------------Q--TRSEF----SEEELTSVVLMKN---GRKVVCGSQSGT 60 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~------------~--~~~~~----~~~~v~~~~~~~~---~~~l~~~~~d~~ 60 (150)
..+|+|++|+.. ++..|.|..+..+.. . ..+.. ...+|..+.|+|- +..|++-..|+.
T Consensus 72 vlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~ 150 (452)
T 3pbp_A 72 ISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT 150 (452)
T ss_dssp EECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC
T ss_pred EECCCCCEEEEe-cCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE
Confidence 468999999998 556999999884320 0 11111 2467999999995 668999999999
Q ss_pred EEEEEccc
Q 031924 61 VLLYSWGY 68 (150)
Q Consensus 61 i~i~~~~~ 68 (150)
|++||+..
T Consensus 151 Ir~yDl~~ 158 (452)
T 3pbp_A 151 ITMFDILN 158 (452)
T ss_dssp EEEEETTC
T ss_pred EEEEEccc
Confidence 99999964
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.016 Score=41.65 Aligned_cols=111 Identities=12% Similarity=0.077 Sum_probs=68.1
Q ss_pred cceEEEEcC-CCeEEEEEc-CCCeeeeeeccCCCc-----------EEEEEEEeCCCE----EEeecCCCeEEEEEcccc
Q 031924 7 AMKLLGTSG-DGTLSVCNL-RKNTVQTRSEFSEEE-----------LTSVVLMKNGRK----VVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 7 ~~~l~~~~~-d~~i~i~d~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----l~~~~~d~~i~i~~~~~~ 69 (150)
+..++.++. ++.|.-+|. ++++.+.+....... ...+++.|.+.. ++.++.|+.+..+|.. .
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~-T 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE-T 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT-T
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC-C
Confidence 446667767 889999999 899888665533211 123455444444 8888899999999975 3
Q ss_pred cccccccccccc----cceeEeeecCCCEEEEec------CCCcEEEEeccCCeeeeecc
Q 031924 70 KDCSDRFVGLSP----NSVDALLKLDEDRVITGS------ENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 70 ~~~~~~~~~~~~----~~v~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~ 119 (150)
++..-+... .. ..+.+.-...+..++.++ .++.|+.+|..+++.+..+.
T Consensus 141 G~~~W~~~~-~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 141 GETVWKVEN-SDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp CCEEEEEEC-CCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCEEEeecC-CCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 454433321 11 011110001134555555 37999999999998776653
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.053 Score=38.06 Aligned_cols=143 Identities=12% Similarity=0.028 Sum_probs=79.5
Q ss_pred eeecCc-ceEEEEcCCCeEEEEEcC-------CCee-----------eeee--ccCCCcEEEEEEEeCCCEEE-eecCCC
Q 031924 2 TFAADA-MKLLGTSGDGTLSVCNLR-------KNTV-----------QTRS--EFSEEELTSVVLMKNGRKVV-CGSQSG 59 (150)
Q Consensus 2 ~~~~~~-~~l~~~~~d~~i~i~d~~-------~~~~-----------~~~~--~~~~~~v~~~~~~~~~~~l~-~~~~d~ 59 (150)
+++|++ .++++-..++.|..+|+. ++.. ...+ .........++|+|+|+.|+ +-+..+
T Consensus 253 avdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h 332 (496)
T 3kya_A 253 TIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNH 332 (496)
T ss_dssp EECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT
T ss_pred EEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCC
Confidence 567744 445555678889999987 4433 1111 12233457999999999654 445678
Q ss_pred eEEEEEcccccccc---ccccccc---c------------ccee-Eee-e-------cCCCEEEEecCCCcEEEEeccCC
Q 031924 60 TVLLYSWGYFKDCS---DRFVGLS---P------------NSVD-ALL-K-------LDEDRVITGSENGLISLVGILPN 112 (150)
Q Consensus 60 ~i~i~~~~~~~~~~---~~~~~~~---~------------~~v~-~~~-~-------~~~~~l~~~~~dg~i~~~d~~~~ 112 (150)
.|+.++.......+ ..+.+ . . .... .++ . .++.++++=..++.|+.++. ++
T Consensus 333 ~I~kid~dg~~~~~~~~~~~aG-~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G 410 (496)
T 3kya_A 333 YFMRSDYDEIKKEFITPYNFVG-GYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG 410 (496)
T ss_dssp EEEEEEEETTTTEECCCEEEEE-BTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC
T ss_pred EEEEEecCCCcceecccEEecC-CCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC
Confidence 88887653211111 11211 1 0 1112 222 2 45667777777889999984 44
Q ss_pred eeeeeccCC---------------CC--------cceeEEEEcCC-ccEEEeccccccc
Q 031924 113 RIIQPIAEH---------------SE--------YPIESLGIASV-LCFINSGFLSLNV 147 (150)
Q Consensus 113 ~~~~~~~~~---------------~~--------~~i~~~~~~~~-~~~l~s~~~~~~v 147 (150)
.. .++... .+ .....|+++++ |.++++=.....|
T Consensus 411 ~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rI 468 (496)
T 3kya_A 411 IV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTI 468 (496)
T ss_dssp BE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred CE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEE
Confidence 32 222110 00 12668999996 7777665444443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0049 Score=45.00 Aligned_cols=116 Identities=9% Similarity=-0.050 Sum_probs=63.7
Q ss_pred eeecCcceEEEEc-CC-CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEccccccccccccc
Q 031924 2 TFAADAMKLLGTS-GD-GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 2 ~~~~~~~~l~~~~-~d-~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
+++|.+..|+.+. .. +.|..+++........+.......+.++++|++..| ++-...+.|..+++.. .....+..
T Consensus 502 avDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG--~~~~~~~~ 579 (699)
T 1n7d_A 502 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILE 579 (699)
T ss_dssp ECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS--SCCEEECC
T ss_pred EEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC--CceEEEEe
Confidence 5566555555543 22 577777765432222222223456789999875555 4555667899998752 22222211
Q ss_pred c--cccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeecc
Q 031924 79 L--SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 79 ~--~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 119 (150)
. .......+..-.+.++++....+.|..++..+++.+..+.
T Consensus 580 ~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 580 DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp CSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred cCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence 0 1111122221233566666677899999988877766664
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.93 E-value=0.045 Score=37.17 Aligned_cols=117 Identities=9% Similarity=-0.045 Sum_probs=69.6
Q ss_pred CeeecCcceEEEEc-C-CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLLGTS-G-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
|+++|.+..|+.+. . .+.|...++............-.....+++++++..|+.+ ...+.|..+|+. +.....+.
T Consensus 207 iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~ 284 (400)
T 3p5b_L 207 IVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTIL 284 (400)
T ss_dssp EEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCCCEEEE
T ss_pred EEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC--CCccEEEE
Confidence 35677655555554 2 3678888876543333333334567999999887777655 456789999975 22222221
Q ss_pred cc--cccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeecc
Q 031924 78 GL--SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 78 ~~--~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 119 (150)
.. .......+....+.++.+-...+.|..+|..+++.+..+.
T Consensus 285 ~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 285 EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp ECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred eCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 10 1122234443445666777777899999977776555543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.075 Score=39.29 Aligned_cols=131 Identities=16% Similarity=0.114 Sum_probs=79.2
Q ss_pred cCcceEEEEcCCCeEEEEEcCCCeeeeeecc--------CCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--------SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 76 (150)
++++ |-.|+.++-|..|+..+++....... ....|.++...++|+.|..|+.++-+..||... ++ ...+
T Consensus 366 ~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~ 442 (795)
T 4a2l_A 366 KDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VENF 442 (795)
T ss_dssp TTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEEE
T ss_pred CCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEEe
Confidence 3444 44555666788999887654332211 235688998888888577777777788998742 22 2222
Q ss_pred cc----ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccC------CCCcceeEEEEcCCccEEEec
Q 031924 77 VG----LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAE------HSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 77 ~~----~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~s~ 141 (150)
.. .....|.++. ..++++.+.. .+ -+..||..+++....... ... .|.++..+++|++.+..
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~i~~d~~g~lWigt 515 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSK-QITTLFRDSHKRLWIGG 515 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCC-CEEEEEECTTCCEEEEE
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCc-eEEEEEECCCCCEEEEe
Confidence 10 0235677776 5566655544 44 578899877654332211 113 48899999988865543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.84 E-value=0.046 Score=35.96 Aligned_cols=115 Identities=9% Similarity=-0.070 Sum_probs=67.1
Q ss_pred CeeecCcceEEEEc--CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEccccccccccc-
Q 031924 1 MTFAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRF- 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~- 76 (150)
|+++|.+..|+.+. ..+.|..+++............-...+.+++++++..|+.+ ...+.|..+++.. .....+
T Consensus 127 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~~ 204 (318)
T 3sov_A 127 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--TNRQAVV 204 (318)
T ss_dssp EEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEE
T ss_pred EEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC--CceEEEe
Confidence 35677656666554 25788888876433222222334467899999976666554 4568899999852 222222
Q ss_pred ccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeec
Q 031924 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
.+ .......+....+.++.+-...+.|..++..+++....+
T Consensus 205 ~~-~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 205 KG-SLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp CS-CCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred cC-CCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 11 122223444224556666667788999988666544433
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.045 Score=35.84 Aligned_cols=116 Identities=9% Similarity=-0.050 Sum_probs=67.3
Q ss_pred CeeecCcceEEEEc-CC-CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLLGTS-GD-GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d-~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
++++|.+..|+.+. .. +.|..+++............-.....+++++++..|+.+ ...+.|..+|+. +...+.+.
T Consensus 125 iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--g~~~~~~~ 202 (316)
T 1ijq_A 125 IVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTIL 202 (316)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEE
T ss_pred EEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC--CCceEEEe
Confidence 35677655555544 33 688888876432222222334567899999887666554 456799999985 22222221
Q ss_pred cc--cccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeec
Q 031924 78 GL--SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 78 ~~--~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
.. .......+.-..+.++.+-...+.|..++..+++.+..+
T Consensus 203 ~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 203 EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred ecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 10 112223444234666777777889999987666544444
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0034 Score=41.78 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=69.1
Q ss_pred ceEEEEcCCCeEEEEEcCCCeeeeeeccC-CCcEEEEEEE--e-CCCEEEee-cCCCeEEEEEcccccccccccccc---
Q 031924 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLM--K-NGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVGL--- 79 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~--- 79 (150)
..++.++.||.|.-+|.++|+...+++.. ..++....-. + ++..++.. +.||.+..++.. .+.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~-~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH-QGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETT-TEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECC-CCcEEeeeccccce
Confidence 47788889999999999999988877654 1222221100 1 22333333 689999999974 33322222110
Q ss_pred cccceeEee--e-------cCCCEEEEecCCCcEEEEeccCCeeeeeccC
Q 031924 80 SPNSVDALL--K-------LDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (150)
Q Consensus 80 ~~~~v~~~~--~-------~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 120 (150)
...++..-. - ..+..+++|+.+|.+...|+.+|+.+..+..
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 111121100 0 1467889999999999999999998887753
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.06 Score=37.09 Aligned_cols=138 Identities=11% Similarity=0.111 Sum_probs=78.9
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccC----CCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-cc--------
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS----EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DC-------- 72 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~-------- 72 (150)
++..++.+ .++.||.-++..+..-+.+... -+.+..+..+|+|++|+..+. ..|.+..+.... ..
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccc
Confidence 44445555 4467777777643322222222 235778999999999988754 478887774111 00
Q ss_pred c--ccccc-----ccccceeEee-ec---CCCEEEEecCCCcEEEEeccCC--eeeeecc---------CCCCcceeEEE
Q 031924 73 S--DRFVG-----LSPNSVDALL-KL---DEDRVITGSENGLISLVGILPN--RIIQPIA---------EHSEYPIESLG 130 (150)
Q Consensus 73 ~--~~~~~-----~~~~~v~~~~-~~---~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~---------~~~~~~i~~~~ 130 (150)
. +.+.- ....+|..+. +| .+..|++-..|+.||+||+... ++. .+. .... .|.+++
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~-ev~S~~ 186 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVN-DITDLE 186 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCC-CEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccc-eEEEEE
Confidence 0 11111 0134466554 55 4568999999999999999641 111 111 1112 488999
Q ss_pred EcCCccE--EEeccccccc
Q 031924 131 IASVLCF--INSGFLSLNV 147 (150)
Q Consensus 131 ~~~~~~~--l~s~~~~~~v 147 (150)
|.+++-. +++....|+|
T Consensus 187 Fg~~~lTLYvl~~t~~GDI 205 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDI 205 (452)
T ss_dssp ECTTSSCEEEEECTTSCEE
T ss_pred EcCCCcEEEEEecCCCCCE
Confidence 9998753 3333344444
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.029 Score=40.00 Aligned_cols=121 Identities=12% Similarity=-0.026 Sum_probs=72.3
Q ss_pred EEEEEcCC----CeeeeeeccCCCcEEEEEEEeCCCEEEeec-CCCeEEEEEccccccc------------ccccccccc
Q 031924 19 LSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDC------------SDRFVGLSP 81 (150)
Q Consensus 19 i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~------------~~~~~~~~~ 81 (150)
+.+.|.+. +.....+.........+..+|||+++++++ .+.++.++|++..... ...... ..
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-Gl 378 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GL 378 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CS
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CC
Confidence 56666655 222222223334557889999999987654 7889999998632111 111111 23
Q ss_pred cceeEeeecCCCEEEEecCCCcEEEEeccCC----------eeeeeccCCCCcceeEEEE------cCCccEEEecc
Q 031924 82 NSVDALLKLDEDRVITGSENGLISLVGILPN----------RIIQPIAEHSEYPIESLGI------ASVLCFINSGF 142 (150)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~----------~~~~~~~~~~~~~i~~~~~------~~~~~~l~s~~ 142 (150)
.+.......+|+...+-.-|..|.-|++... ..+..+.-|-. +-.+.- .|||++|++..
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq--pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ--PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC--EEEEEETTTTSTTCCSCEEEEEE
T ss_pred cccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC--CcccccCCCccCCCCccEEEEec
Confidence 3344444667766677778999999998643 35555554432 333333 57888888753
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.60 E-value=0.073 Score=35.01 Aligned_cols=108 Identities=7% Similarity=-0.065 Sum_probs=62.5
Q ss_pred eeecCc-ceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec--CCCeEEEEEccccccccccccc
Q 031924 2 TFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 2 ~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++++.+ ++.++-...+.|.++++..................+++.|.+..++... ..+.|..+++. +.....+..
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~ 162 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIIIN 162 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--SCSCEEEEC
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCeEEEEE
Confidence 455533 3444445677888888765433323334445678999998766665554 35788888874 332222211
Q ss_pred ccccceeEee-ecCCC-EEEEecCCCcEEEEeccC
Q 031924 79 LSPNSVDALL-KLDED-RVITGSENGLISLVGILP 111 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~-~l~~~~~dg~i~~~d~~~ 111 (150)
..-.....++ .+++. +..+-+..+.|..+|+..
T Consensus 163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 0122334555 66444 445555678899998853
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.15 Score=37.74 Aligned_cols=128 Identities=13% Similarity=0.069 Sum_probs=75.6
Q ss_pred cCcceEEEEcCCCeEEEEEcCCCeeeeeec----cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc---
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSE----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV--- 77 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~--- 77 (150)
++++.|..|+.++-|..||..+++...... .....|.++...++|+..+ |+.+| +..|+... ++. ..+.
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~G-l~~~~~~~-~~~-~~~~~~~ 490 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTLSA-LVRFNPEQ-RSF-TTIEKEK 490 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EESSC-EEEEETTT-TEE-EECCBCT
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-EecCc-eeEEeCCC-CeE-EEccccc
Confidence 455536666676779999988876443221 1245788888888777544 44454 77788642 221 1121
Q ss_pred ---cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec---c---CCCCcceeEEEEcCCccEEEe
Q 031924 78 ---GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI---A---EHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 78 ---~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~---~~~~~~i~~~~~~~~~~~l~s 140 (150)
......+.++. ..++++.+... +-+..||..+++. ... . .... .|.++..+++|++.++
T Consensus 491 ~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~-~i~~i~~d~~g~lWig 559 (795)
T 4a2l_A 491 DGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI-QKASILPVSNVTKL-FTNCIYEASNGIIWVG 559 (795)
T ss_dssp TCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE-EECCCSCSCGGGGS-CEEEEEECTTSCEEEE
T ss_pred cccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE-EEecCCCCCCCCCC-eeEEEEECCCCCEEEE
Confidence 10235577776 56676665444 4578888876655 211 0 1112 4888999999886544
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.066 Score=33.57 Aligned_cols=128 Identities=9% Similarity=-0.052 Sum_probs=71.5
Q ss_pred CcceEEEEcCCCeEEEEEcCCCee------eeeecc-CCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTV------QTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
.+..|+....| +++.=....+.. ..++-. .-..+..++|+|+|...++ .+|.+.-.+..+. ..+...+
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~--~~~~W~~ 77 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTH--DNDNWMG 77 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCS--TTCCHHH
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCC--Ccccccc
Confidence 44556666677 666655555431 112211 1246779999999886555 7777666554221 1111111
Q ss_pred ccccc--------eeEee-ecCCCEEEEecCCCcEEEEeccCCeee------eeccCCCCcceeEEEEcCCccEEEec
Q 031924 79 LSPNS--------VDALL-KLDEDRVITGSENGLISLVGILPNRII------QPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 79 ~~~~~--------v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
.... ..++. .++|.+.++ .||.|+-++..+...- ..+....-..+..+.+.|+|.+.+..
T Consensus 78 -s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 78 -RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp -HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred -cccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 1111 24555 778877777 6699988876332110 11111111248899999999988876
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.15 Score=37.61 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=73.3
Q ss_pred cCcceEEEEcCCCeEEEEEcCCCeeeeeeccC-----CCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc--
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-----EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-- 77 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-- 77 (150)
+++++.+ +.. +-|..||..+++........ ...+.++...++|+. ..|+.++-+..||... .....+.
T Consensus 459 ~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~--~~~~~~~~~ 533 (781)
T 3v9f_A 459 KNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRF-WIGTFGGGVGIYTPDM--QLVRKFNQY 533 (781)
T ss_dssp TTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCE-EEEESSSCEEEECTTC--CEEEEECTT
T ss_pred CCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCE-EEEEcCCCEEEEeCCC--CeEEEccCC
Confidence 3444444 434 56888998876543322211 357888888887774 4455533366677642 2222221
Q ss_pred -cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCC---CCcceeEEEEcCCccEEEec
Q 031924 78 -GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEH---SEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 78 -~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~s~ 141 (150)
+.....|.++. ..+|++.++. .+|-+..||..+++. ..+... ....|.++..+++|++.+++
T Consensus 534 ~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 534 EGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWAST 600 (781)
T ss_dssp TTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEEC
T ss_pred CCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEEc
Confidence 11234567776 5677665554 466658888876553 222211 12237788888888876654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.11 Score=34.93 Aligned_cols=136 Identities=11% Similarity=0.104 Sum_probs=71.8
Q ss_pred eeecCcceEEEE------------cCCCeEEEEEcCCC--eee-eeecc-----CCCcEEEEEEEe--CCC-EEEee-cC
Q 031924 2 TFAADAMKLLGT------------SGDGTLSVCNLRKN--TVQ-TRSEF-----SEEELTSVVLMK--NGR-KVVCG-SQ 57 (150)
Q Consensus 2 ~~~~~~~~l~~~------------~~d~~i~i~d~~~~--~~~-~~~~~-----~~~~v~~~~~~~--~~~-~l~~~-~~ 57 (150)
+..|+|..++++ ..+|.|.++|..+. +.. ..+.+ ..-....+.+.+ ++. +|++. ..
T Consensus 56 ~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~ 135 (355)
T 3sre_A 56 EILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP 135 (355)
T ss_dssp EECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECS
T ss_pred EEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECC
Confidence 456666555554 26899999998742 221 12222 122577888877 343 34433 33
Q ss_pred --CCeEEEEEccccccc---ccccccccccceeEee-ecCCCEEEEecC-----------------CCcEEEEeccCCee
Q 031924 58 --SGTVLLYSWGYFKDC---SDRFVGLSPNSVDALL-KLDEDRVITGSE-----------------NGLISLVGILPNRI 114 (150)
Q Consensus 58 --d~~i~i~~~~~~~~~---~~~~~~~~~~~v~~~~-~~~~~~l~~~~~-----------------dg~i~~~d~~~~~~ 114 (150)
+.++.+|++...+.. ...+.+..-...+.+. .++|++.++... .|.++.+|. ++.
T Consensus 136 ~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~ 213 (355)
T 3sre_A 136 GSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV 213 (355)
T ss_dssp TTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC
T ss_pred CCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE
Confidence 568888887543222 2223221122344554 677777666541 244555554 322
Q ss_pred eeeccCCCCcceeEEEEcCCccEEEec
Q 031924 115 IQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
..+...-. -.+.++|+||++.+..+
T Consensus 214 -~~~~~~l~-~pNGia~spDg~~lYva 238 (355)
T 3sre_A 214 -RVVAEGFD-FANGINISPDGKYVYIA 238 (355)
T ss_dssp -EEEEEEES-SEEEEEECTTSSEEEEE
T ss_pred -EEeecCCc-ccCcceECCCCCEEEEE
Confidence 22212122 37789999999765544
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.11 Score=34.75 Aligned_cols=103 Identities=14% Similarity=0.017 Sum_probs=56.6
Q ss_pred CCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc-ccccc---ccccccceeEee-ecC---CCEE-EEecC---C---
Q 031924 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRF---VGLSPNSVDALL-KLD---EDRV-ITGSE---N--- 101 (150)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~---~~~~~~~v~~~~-~~~---~~~l-~~~~~---d--- 101 (150)
-.....++|.|+|+.+++ ..+|.|++++.. ++ .+..+ .. .......+. .++ +..| ++-+. +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~--G~~~~~~~~v~~~-g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISPS--GKKLVASFDVANV-GEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECSS--CEEEEEECCCCCS-TTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeCC--CceEeeccceeec-CCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 456789999999985554 566999988742 32 22111 11 123345555 665 3444 44332 3
Q ss_pred -CcEEEEeccCC-------e-eeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 102 -GLISLVGILPN-------R-IIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 102 -g~i~~~d~~~~-------~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
..|..++.... + .+..+.....-....++|.|||.++++-+.
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECC
Confidence 56777776543 1 112122111102467999999998877543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.1 Score=33.63 Aligned_cols=133 Identities=11% Similarity=-0.005 Sum_probs=65.7
Q ss_pred CcceEEEEcCC-----CeEEEEEcCCCeeeee--eccCCCcEEEEEEEeCCCEEEeecCC-------CeEEEEEccccc-
Q 031924 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQS-------GTVLLYSWGYFK- 70 (150)
Q Consensus 6 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~i~~~~~~~- 70 (150)
+++.++.|+.+ ..+.+||..+.+-... +...... .+++ .-+++.++.|+.+ ..+.+||+....
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVG-VVGGLLYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEE-EECCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 45555566533 3577888887653322 1111111 1222 2356666776542 357888875332
Q ss_pred ccccccccccccceeEeeecCCCEEEEecCC-----CcEEEEeccCCee--eeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 71 DCSDRFVGLSPNSVDALLKLDEDRVITGSEN-----GLISLVGILPNRI--IQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 71 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
..+..++. +..-.++...++.+++.|+.+ ..+.+||+.+.+- +..+..... -..++ ..++++++.|+.
T Consensus 186 ~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~--~~~~~-~~~~~i~v~GG~ 260 (302)
T 2xn4_A 186 TYIAEMST--RRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR--NAGVC-AVNGLLYVVGGD 260 (302)
T ss_dssp EEECCCSS--CCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB--SCEEE-EETTEEEEECCB
T ss_pred EECCCCcc--ccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc--cCeEE-EECCEEEEECCc
Confidence 11222221 111113334567788888764 3688999877652 222211111 11122 236777777775
Q ss_pred cc
Q 031924 144 SL 145 (150)
Q Consensus 144 ~~ 145 (150)
+.
T Consensus 261 ~~ 262 (302)
T 2xn4_A 261 DG 262 (302)
T ss_dssp CS
T ss_pred CC
Confidence 43
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.035 Score=37.21 Aligned_cols=72 Identities=11% Similarity=-0.008 Sum_probs=42.9
Q ss_pred CCcEEEEEEEeCCCEEEee-cCCCeEEEEEcccccccc--cccccccccceeEee-ec-CCCEEEEecCC-CcEEEEecc
Q 031924 37 EEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCS--DRFVGLSPNSVDALL-KL-DEDRVITGSEN-GLISLVGIL 110 (150)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~--~~~~~~~~~~v~~~~-~~-~~~~l~~~~~d-g~i~~~d~~ 110 (150)
-...+.++|+||++.++.+ +..+.|..|++...+... +.+ . .......+. .. +|++.+++..+ +.|..|+..
T Consensus 220 l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 220 FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-S-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-E-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-e-CCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 3467899999999887655 467899999985333221 122 2 223344454 56 47777766544 344444443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.12 Score=34.00 Aligned_cols=104 Identities=9% Similarity=-0.031 Sum_probs=57.9
Q ss_pred cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc-ccccccceeEee-ecCCCEEEEecCCCcEEEEeccCC
Q 031924 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF-VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPN 112 (150)
Q Consensus 35 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~ 112 (150)
.....+..+.+.+++..++.+...+..+-.|-. +..-+.+ .. ....+..+. .++++.++ .+.+|.++..+...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g--G~tW~~~~~~-~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G 235 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG--QTAWEPHNRT-TSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNS 235 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECTT--CSSCEEEECC-SSSCEEEEEECTTSCEEE-EETTTEEEEEETTEE
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC--CCceeECCCC-CCCccceeEECCCCCEEE-EeCCceEEEecCCCC
Confidence 445578899999988887776544433333420 1111111 12 334555555 56666554 455788777643334
Q ss_pred eeeeeccCC---CCcceeEEEEcCCccEEEecc
Q 031924 113 RIIQPIAEH---SEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 113 ~~~~~~~~~---~~~~i~~~~~~~~~~~l~s~~ 142 (150)
+....+... ....+..+++.+++.+++.+.
T Consensus 236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~ 268 (327)
T 2xbg_A 236 ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG 268 (327)
T ss_dssp EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred CeeEeccCCcccCCcceEEEEecCCCEEEEEeC
Confidence 433333211 112478889998888777654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.13 Score=34.45 Aligned_cols=125 Identities=14% Similarity=0.139 Sum_probs=74.0
Q ss_pred CCeEEEEEc--CCCeeeeeecc------CC-CcEEEEEE--EeC-CC-EEEeecCCCeEEEEEccc------cccccccc
Q 031924 16 DGTLSVCNL--RKNTVQTRSEF------SE-EELTSVVL--MKN-GR-KVVCGSQSGTVLLYSWGY------FKDCSDRF 76 (150)
Q Consensus 16 d~~i~i~d~--~~~~~~~~~~~------~~-~~v~~~~~--~~~-~~-~l~~~~~d~~i~i~~~~~------~~~~~~~~ 76 (150)
+++|.+|++ .+++ +..+.. .. ..+..+++ +|. +. ++++...+|.+..|++.. ..+.+.+|
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 589999977 3443 333311 11 34556666 664 43 677888889999998842 12455666
Q ss_pred ccccccceeEeeecCCCEEEEecCCCcEEEEecc-----CCeeeeecc-CCCCcceeEEEE--cCCcc-EEEecc
Q 031924 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGIL-----PNRIIQPIA-EHSEYPIESLGI--ASVLC-FINSGF 142 (150)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~-----~~~~~~~~~-~~~~~~i~~~~~--~~~~~-~l~s~~ 142 (150)
.. ....-.|...+....|+.+-++.-|..++.+ +.+.+..+. .+-...+..|++ .++++ +|+..+
T Consensus 177 ~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs 250 (355)
T 3amr_A 177 KM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS 250 (355)
T ss_dssp EC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred cC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence 64 3333334447777788888888777777755 234555442 222224788887 45555 444433
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.2 Score=36.25 Aligned_cols=110 Identities=8% Similarity=-0.046 Sum_probs=62.9
Q ss_pred CeeecCcceEE-EEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC--CCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~ 77 (150)
|++++.++.|+ +-...+.|.+.++..................+++.|.+.+|+.... .+.|...++. +.....+.
T Consensus 89 lAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d--G~~~~~l~ 166 (619)
T 3s94_A 89 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIII 166 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEE
T ss_pred EEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC--CCceEEEE
Confidence 45677545444 4456789999998765333233234455689999997655554443 4567666664 33222222
Q ss_pred cccccceeEee-ecC-CCEEEEecCCCcEEEEeccCC
Q 031924 78 GLSPNSVDALL-KLD-EDRVITGSENGLISLVGILPN 112 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~-~~~l~~~~~dg~i~~~d~~~~ 112 (150)
...-.....+. .++ ++++.+-...+.|..+|+...
T Consensus 167 ~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 167 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence 10223344555 554 445555556778888888543
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.13 Score=33.19 Aligned_cols=133 Identities=9% Similarity=0.066 Sum_probs=66.6
Q ss_pred CcceEEEEcCC----CeEEEEEcCCCeeeee--eccCCCcEEEEEEEeCCCEEEeecCC------CeEEEEEccccc-cc
Q 031924 6 DAMKLLGTSGD----GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFK-DC 72 (150)
Q Consensus 6 ~~~~l~~~~~d----~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~-~~ 72 (150)
+++.++.|+.+ ..+.+||..+++-... +.........+ .-+++.++.|+.+ ..+.+||..... ..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAAC--AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEE--EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEE--EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 44555566533 6788899888753322 11111111222 2366777777654 468888875332 11
Q ss_pred ccccccccccceeEeeecCCCEEEEecC---------CCcEEEEeccCCee--eeeccCCCCcceeEEEEcCCccEEEec
Q 031924 73 SDRFVGLSPNSVDALLKLDEDRVITGSE---------NGLISLVGILPNRI--IQPIAEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~---------dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
...++. +..-.++...++++++.|+. ...+..||+.+.+- +..+..... -..+.. -++++++.|
T Consensus 133 ~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~~-~~~~i~v~G 207 (306)
T 3ii7_A 133 KPSMLT--QRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARK--NHGLVF-VKDKIFAVG 207 (306)
T ss_dssp ECCCSS--CCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCB--SCEEEE-ETTEEEEEC
T ss_pred CCCCcC--CcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhh--cceEEE-ECCEEEEEe
Confidence 112221 11111233456777777764 34588899877652 222211111 112222 267777777
Q ss_pred cccc
Q 031924 142 FLSL 145 (150)
Q Consensus 142 ~~~~ 145 (150)
+.+.
T Consensus 208 G~~~ 211 (306)
T 3ii7_A 208 GQNG 211 (306)
T ss_dssp CEET
T ss_pred CCCC
Confidence 7543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.26 Score=35.66 Aligned_cols=134 Identities=9% Similarity=-0.058 Sum_probs=70.6
Q ss_pred CeeecCcceEEEEc-CCCeEEEEEcCCCee-eeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
|+|++.+..|+.+. ..+.|..+++..... ...+.........+++.+.++.| ++-...+.|.+.++. +.....+.
T Consensus 45 ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d--G~~~~~l~ 122 (619)
T 3s94_A 45 VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD--GSLRKVLF 122 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEE
T ss_pred EEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC--CCCEEEEE
Confidence 35677555555543 567788888765422 22233333567899999865555 455567899999985 33222222
Q ss_pred -cccccceeEee-ecC-CCEEEEecC-CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEE
Q 031924 78 -GLSPNSVDALL-KLD-EDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFI 138 (150)
Q Consensus 78 -~~~~~~v~~~~-~~~-~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (150)
. .-.....++ .+. +.++.+-.. .+.|...++............-. ....+++++++..|
T Consensus 123 ~~-~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~-~P~Glald~~~~~L 185 (619)
T 3s94_A 123 WQ-ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY-WPNGLTLDYEEQKL 185 (619)
T ss_dssp CS-SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS-SEEEEEEETTTTEE
T ss_pred eC-CCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCC-CCcEEEEEccCCEE
Confidence 2 222233444 554 444444322 45677667643222222212222 37788999864433
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.15 Score=32.84 Aligned_cols=132 Identities=9% Similarity=0.011 Sum_probs=66.4
Q ss_pred CcceEEEEcCC-----CeEEEEEcCCCeeee--eeccCCCcEEEEEEEeCCCEEEeecCC-----CeEEEEEccccc-cc
Q 031924 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFK-DC 72 (150)
Q Consensus 6 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~-~~ 72 (150)
+++.++.|+.+ ..+.+||..+.+-.. ........- ++. ..+++.++.|+.+ ..+.+||+.... ..
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA-GLV-VASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC-EEE-EETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc-eEE-EECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 45555555432 468889988765332 222111111 222 2367777777654 458888875322 11
Q ss_pred ccccccccccceeEeeecCCCEEEEecCC-----CcEEEEeccCCeee--eeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 73 SDRFVGLSPNSVDALLKLDEDRVITGSEN-----GLISLVGILPNRII--QPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
+..++. +..-.++...++++++.|+.+ ..+.+||+.+.+-. ..+..... ....+ .-++++++.|+.+
T Consensus 190 ~~~~p~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~-~~~~~--~~~~~i~v~GG~~ 263 (301)
T 2vpj_A 190 VTPMAT--KRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC-YVGAT--VLRGRLYAIAGYD 263 (301)
T ss_dssp ECCCSS--CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCEEE--EETTEEEEECCBC
T ss_pred CCCCCc--ccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc-ceeEE--EECCEEEEEcCcC
Confidence 112221 111112334567788888764 46889999876532 22211111 12222 2367777777754
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.33 Score=36.21 Aligned_cols=110 Identities=11% Similarity=-0.056 Sum_probs=64.9
Q ss_pred CeeecCcceEE-EEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC--CCeEEEEEcccccccccccc
Q 031924 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~ 77 (150)
|++++.++.|+ +-...+.|.+.++........+.........+++.|.+.+|+.... .+.|...++. +.....+.
T Consensus 476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d--G~~~~~lv 553 (791)
T 3m0c_C 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLV 553 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEE
T ss_pred eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC--CCceEEEE
Confidence 35666554444 4456788999998765433333344456789999998666655542 3678888875 33222222
Q ss_pred cccccceeEee-ec-CCCEEEEecCCCcEEEEeccCC
Q 031924 78 GLSPNSVDALL-KL-DEDRVITGSENGLISLVGILPN 112 (150)
Q Consensus 78 ~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~~~d~~~~ 112 (150)
...-.....++ .+ .++++++-...+.|...++...
T Consensus 554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 10223445555 54 4444555456678888888543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.2 Score=33.38 Aligned_cols=104 Identities=11% Similarity=0.059 Sum_probs=57.2
Q ss_pred CCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc---ccccccceeEee-ecC---CCEEE-EecCC-----Cc
Q 031924 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---VGLSPNSVDALL-KLD---EDRVI-TGSEN-----GL 103 (150)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~---~~~~~~~v~~~~-~~~---~~~l~-~~~~d-----g~ 103 (150)
-.....++|.|+|+.+++ ..+|.|++++ ......+..+ .. .......+. +++ +..|+ +-... +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~-g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHR-GESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCS-TTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecceEeec-CCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 445689999999985554 5669999987 3211211111 11 123345555 665 44444 43332 56
Q ss_pred EEEEeccCCe------eeeeccC--CCCcceeEEEEcCCccEEEeccc
Q 031924 104 ISLVGILPNR------IIQPIAE--HSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 104 i~~~d~~~~~------~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
|..++..... .+..+.. ........++|.|||.++++-+.
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~ 154 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGE 154 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECC
Confidence 7777775431 2222321 11112468999999988777543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.18 Score=32.65 Aligned_cols=133 Identities=8% Similarity=-0.065 Sum_probs=65.9
Q ss_pred CcceEEEEcCC-----CeEEEEEcCCCeeeee--eccCCCcEEEEEEEeCCCEEEeecCC-----CeEEEEEccccc-cc
Q 031924 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFK-DC 72 (150)
Q Consensus 6 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~-~~ 72 (150)
+++.++.|+.+ ..+.+||..+.+-... +......-..+. -++..++.|+.+ ..+.+||+.... ..
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV--LNRLLYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE--ECCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 44555555422 4678889887653321 111111112222 266667777654 458888875332 11
Q ss_pred ccccccccccceeEeeecCCCEEEEecCC-----CcEEEEeccCCeeee--eccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 73 SDRFVGLSPNSVDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQ--PIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
+..++. +..-.++...++++++.|+.+ ..+.+||+.+.+-.. .+..... -.+++. -++++++.|+.+.
T Consensus 199 ~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~--~~~~~~-~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 199 ITAMNT--IRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS--ALGITV-HQGRIYVLGGYDG 273 (308)
T ss_dssp CCCCSS--CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB--SCEEEE-ETTEEEEECCBCS
T ss_pred CCCCCC--ccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc--ceEEEE-ECCEEEEEcCcCC
Confidence 122221 111112334467788888765 468899997765322 2211111 112222 3677777777543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.86 E-value=0.18 Score=39.25 Aligned_cols=95 Identities=13% Similarity=0.186 Sum_probs=59.6
Q ss_pred CeEEEEEcCCCeeeeeeccC-CCcEEEEEEEe----CCCEEEeec----------CCCeEEEEEccccccccccc-cccc
Q 031924 17 GTLSVCNLRKNTVQTRSEFS-EEELTSVVLMK----NGRKVVCGS----------QSGTVLLYSWGYFKDCSDRF-VGLS 80 (150)
Q Consensus 17 ~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~----~~~~l~~~~----------~d~~i~i~~~~~~~~~~~~~-~~~~ 80 (150)
..|++.|..+.+.+..++-. .+.+.+++... ...++++|+ ..|.|.+|++.. .+..... .. .
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~-~kL~lv~~~~-v 884 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD-GKLQTVAEKE-V 884 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET-TEEEEEEEEE-E
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC-CEEEEEEEEE-c
Confidence 46888898887766555433 34455555432 246888876 358899999852 2221111 12 4
Q ss_pred ccceeEeeecCCCEEEEecCCCcEEEEeccCCeee
Q 031924 81 PNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115 (150)
Q Consensus 81 ~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 115 (150)
++++++++..+|+++++. ...+++|++...+.+
T Consensus 885 ~g~v~al~~~~g~Lla~i--g~~l~vy~l~~~~~L 917 (1158)
T 3ei3_A 885 KGAVYSMVEFNGKLLASI--NSTVRLYEWTTEKEL 917 (1158)
T ss_dssp SSCEEEEEEETTEEEEEE--TTEEEEEEECTTSCE
T ss_pred CCcCEEEeeeCCEEEEEc--CCEEEEEECCCCceE
Confidence 677888887788666544 468999999765433
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.21 Score=32.39 Aligned_cols=123 Identities=12% Similarity=0.064 Sum_probs=60.1
Q ss_pred CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC-C-----CeEEEEEccccc-ccccccccccccceeEeee
Q 031924 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-S-----GTVLLYSWGYFK-DCSDRFVGLSPNSVDALLK 89 (150)
Q Consensus 17 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~~ 89 (150)
..+.+||..+.+-...-..........+...+++.++.|+. + ..+.+||..... ..+..++. +..-.++..
T Consensus 117 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~ 194 (315)
T 4asc_A 117 DSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQT--ARSLFGATV 194 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSS--CCBSCEEEE
T ss_pred ceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCC--chhceEEEE
Confidence 45888998876532211111111111122246666777765 2 468888875332 11222221 111112334
Q ss_pred cCCCEEEEecCCC-----cEEEEeccCCee--eeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 90 LDEDRVITGSENG-----LISLVGILPNRI--IQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 90 ~~~~~l~~~~~dg-----~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
.++++++.|+.++ .+.+||+.+.+- +..+... .... +++ .-++++++.|+.+
T Consensus 195 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~-~~~-~~~~~l~v~GG~~ 253 (315)
T 4asc_A 195 HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-RSSL-SLV-SLVGTLYAIGGFA 253 (315)
T ss_dssp ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-CBSC-EEE-EETTEEEEEEEEE
T ss_pred ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-ccce-eEE-EECCEEEEECCcc
Confidence 4777888887654 578889877652 2222111 1111 222 2366777777764
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.36 Score=34.95 Aligned_cols=133 Identities=11% Similarity=0.036 Sum_probs=74.5
Q ss_pred CeeecCcceEEEE-cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEcccccccccccc-
Q 031924 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFV- 77 (150)
Q Consensus 1 i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~- 77 (150)
|+|++.+..|+.+ ..++.|..+++........+.........+++.+.+..| ++-...+.|.+.++. +.....+.
T Consensus 42 l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d--G~~~~~l~~ 119 (628)
T 4a0p_A 42 LDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD--GQHRQVLVW 119 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--STTCEEEEC
T ss_pred EEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecC--CCcEEEEEe
Confidence 4677765555544 467888888887553333333333456788998765555 555566889999875 22222222
Q ss_pred cccccceeEee-ecC-CCEEEEec-CCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEE
Q 031924 78 GLSPNSVDALL-KLD-EDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFI 138 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~-~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (150)
. .-.....++ .|. |.++.+-. ..+.|...++..... ..+...-. ....+++++++..|
T Consensus 120 ~-~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~-~P~GlalD~~~~~L 180 (628)
T 4a0p_A 120 K-DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVG-RANGLTIDYAKRRL 180 (628)
T ss_dssp S-SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCS-SEEEEEEETTTTEE
T ss_pred C-CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCC-CcceEEEccccCEE
Confidence 2 223345555 664 44444432 256777777754332 22212223 37788999865443
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.73 E-value=0.53 Score=36.74 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=60.2
Q ss_pred eEEEEcCCCeEEEEEcCCCeeee-eeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc-ccccccceeE
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF-VGLSPNSVDA 86 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~~~v~~ 86 (150)
+|+++ ..+++++|++...+.+. ...... .+..+.....++++++|+.-..+.++..+........+ ....+.++++
T Consensus 897 ~Lla~-ig~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta 974 (1158)
T 3ei3_A 897 KLLAS-INSTVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSA 974 (1158)
T ss_dssp EEEEE-ETTEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEE
T ss_pred EEEEE-cCCEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEE
Confidence 45555 34689999998765333 111111 12333343458899999887777776543222222222 1114566777
Q ss_pred eeecCCCEEEEecCCCcEEEEeccC
Q 031924 87 LLKLDEDRVITGSENGLISLVGILP 111 (150)
Q Consensus 87 ~~~~~~~~l~~~~~dg~i~~~d~~~ 111 (150)
+...+...++.+..+|.+.+....+
T Consensus 975 ~~~ld~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 975 VEILDDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEETTEEEEEETTSEEEEEEECT
T ss_pred EEEEccCcEEEEcCCCcEEEEecCC
Confidence 7655566888888999999886543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.25 Score=32.44 Aligned_cols=134 Identities=10% Similarity=-0.007 Sum_probs=69.9
Q ss_pred eeecCcceEEEEcCCCeEEEEEc--CCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc-
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNL--RKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~- 78 (150)
.+.|++++++.+...+..+-.|- .+.+.+. ......+..+.+.++++.++ .+.+|.+++.+.. .++.-..+..
T Consensus 169 ~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D-~G~tW~~~~~~ 244 (327)
T 2xbg_A 169 NRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPD-NSENWGELLSP 244 (327)
T ss_dssp EECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETT-EEEEECCCBCT
T ss_pred EEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCC-CCCeeEeccCC
Confidence 45667777766644433333442 2222221 23445788899988887554 4467887776321 1222111211
Q ss_pred --ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccC---CCCcceeEEEEcCCccEEEecc
Q 031924 79 --LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAE---HSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 79 --~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
.....+..+. .+++..++.+ .++.+ ++....++....+.. ... .+..+.|.+++++++.|.
T Consensus 245 ~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~-~~~~v~~~~~~~~~~~G~ 311 (327)
T 2xbg_A 245 LRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPS-NFYKILFFSPDQGFILGQ 311 (327)
T ss_dssp TSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSS-CCCEEEEEETTEEEEECS
T ss_pred cccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCC-CeEEEEEECCCceEEEcC
Confidence 0123455665 4455555554 46766 344444554443321 223 377888887777666654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.25 Score=32.32 Aligned_cols=124 Identities=6% Similarity=-0.102 Sum_probs=66.4
Q ss_pred eecCcceEEEEcCC--------------CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec--CCCeEEEEEc
Q 031924 3 FAADAMKLLGTSGD--------------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS--QSGTVLLYSW 66 (150)
Q Consensus 3 ~~~~~~~l~~~~~d--------------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~~~ 66 (150)
++++++.|+-+... ..|+..++..++... +... . +..+++++++|+-.. .++.-.||.+
T Consensus 60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 46777777766532 356777776654322 2211 1 236788888887654 3455555555
Q ss_pred ccccccccccccccccceeEeeecCCCEEEEecC-CCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 67 GYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
...+...+++.. +.. .. ..++++.|.-.+. ...|...++..+.....+. + +.. ..+.|++.+|+-
T Consensus 135 ~~dGs~~~~lt~-~~~--~~-~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~-~~~-~~~~P~g~~iy~ 200 (302)
T 3s25_A 135 RIDGEEKKKIKN-HYL--FT-CNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---C-NCY-KPVVLDDTNVYY 200 (302)
T ss_dssp ETTSCCCEEEES-SCC--CC-SEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---S-CEE-EEEEEETTEEEE
T ss_pred ECCCCCeEEEeC-CCc--eE-eeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---C-Ccc-ceeeecCCEEEE
Confidence 434444455544 322 11 2566666665544 5678888876554333322 1 121 234577766553
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.26 Score=31.71 Aligned_cols=133 Identities=7% Similarity=-0.061 Sum_probs=65.8
Q ss_pred CcceEEEEcCC-----CeEEEEEcCCCe---eee--eeccCCCcEEEEEEEeCCCEEEeecCC-----CeEEEEEccccc
Q 031924 6 DAMKLLGTSGD-----GTLSVCNLRKNT---VQT--RSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFK 70 (150)
Q Consensus 6 ~~~~l~~~~~d-----~~i~i~d~~~~~---~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~ 70 (150)
+++.++.|+.+ ..+.+||..+++ -.. .+....... ++. ..++..++.|+.+ ..+.+||.....
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-GAT-TLGDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-eEE-EECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 45556666533 468899988765 222 111111111 222 2366777777643 368888875322
Q ss_pred -ccccccccccccceeEeeecCCCEEEEecCC-----CcEEEEeccCCeeee--eccCCCCcceeEEEEcCCccEEEecc
Q 031924 71 -DCSDRFVGLSPNSVDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQ--PIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 71 -~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
.....++. ...-.++...++++++.|+.+ ..+..||+.+.+-.. .+..... -.++. ..++++++.|+
T Consensus 140 W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~--~~~~~-~~~~~i~v~GG 214 (301)
T 2vpj_A 140 WSMLGDMQT--AREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRS--GAGVA-LLNDHIYVVGG 214 (301)
T ss_dssp EEEEEECSS--CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCB--SCEEE-EETTEEEEECC
T ss_pred EEECCCCCC--CcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccc--cceEE-EECCEEEEEeC
Confidence 11111211 111112334467788887754 468889987765322 2211111 11222 23677777777
Q ss_pred ccc
Q 031924 143 LSL 145 (150)
Q Consensus 143 ~~~ 145 (150)
.+.
T Consensus 215 ~~~ 217 (301)
T 2vpj_A 215 FDG 217 (301)
T ss_dssp BCS
T ss_pred CCC
Confidence 643
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.33 Score=34.89 Aligned_cols=65 Identities=11% Similarity=0.049 Sum_probs=47.8
Q ss_pred eeecCcceEEEEc-CCCeEEEEEcCCC------ee-------eeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc
Q 031924 2 TFAADAMKLLGTS-GDGTLSVCNLRKN------TV-------QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 2 ~~~~~~~~l~~~~-~d~~i~i~d~~~~------~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~ 67 (150)
..+|||+++++++ .+.++.++|.++- +. ....+.-. ...-.+|.++|....+--.|..|..|++.
T Consensus 329 ~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl-GPlHt~Fd~~G~aYTtlfidSqvvkWni~ 407 (638)
T 3sbq_A 329 NTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL-GPLHTTFDGRGNAYTTLFIDSQVVKWNME 407 (638)
T ss_dssp EECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS-CEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred eeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC-cccEEEECCCCceEeeeeecceEEEEecc
Confidence 5789999998876 6889999998752 11 22222222 45678899999666777799999999985
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.34 Score=31.52 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=64.5
Q ss_pred CcceEEEEcCC-------CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC------CCeEEEEEccccc-c
Q 031924 6 DAMKLLGTSGD-------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGYFK-D 71 (150)
Q Consensus 6 ~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~~~~~~~-~ 71 (150)
+++.++.|+.+ ..+.+||..+.+-...-..........+...+++.++.|+. -..+.+||..... .
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 44555555532 35778888876533221111111111112246666677763 2358889975332 1
Q ss_pred cccccccccccceeEeeecCCCEEEEecCCC-----cEEEEeccCCee--eeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 72 CSDRFVGLSPNSVDALLKLDEDRVITGSENG-----LISLVGILPNRI--IQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
....++. +..-.++...++++++.|+.++ .+.+||+.+.+- +..+..... -.++. ..++++++.|+.+
T Consensus 189 ~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~-~~~~~i~v~GG~~ 263 (318)
T 2woz_A 189 DLAPMKT--PRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERS--SISLV-SLAGSLYAIGGFA 263 (318)
T ss_dssp EECCCSS--CCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCB--SCEEE-EETTEEEEECCBC
T ss_pred ECCCCCC--CcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCccc--ceEEE-EECCEEEEECCee
Confidence 1112211 1111133345677888877543 467888876542 222211111 11222 3456777777764
Q ss_pred c
Q 031924 145 L 145 (150)
Q Consensus 145 ~ 145 (150)
.
T Consensus 264 ~ 264 (318)
T 2woz_A 264 M 264 (318)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.32 Score=31.27 Aligned_cols=133 Identities=11% Similarity=0.005 Sum_probs=64.8
Q ss_pred CcceEEEEcCC-----CeEEEEEcCCCeeeee--eccCCCcEEEEEEEeCCCEEEeecCCC-----eEEEEEccccc-cc
Q 031924 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFK-DC 72 (150)
Q Consensus 6 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~~-~~ 72 (150)
+++.++.|+.+ ..+.+||..+.+-... +......- +++ ..++..++.|+.++ .+.+||+.... ..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAA-VLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEE-EECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 44555555533 3588899887653322 11111111 222 23667777776543 56778875322 11
Q ss_pred ccccccccccceeEeeecCCCEEEEecCC-------CcEEEEeccCCee--eeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 73 SDRFVGLSPNSVDALLKLDEDRVITGSEN-------GLISLVGILPNRI--IQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~d-------g~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
...++. +..-.++...++++++.|+.+ ..+..||+.+.+- +..+..... .. +++ .-++++++.|+.
T Consensus 139 ~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~-~~~-~~~~~iyv~GG~ 213 (302)
T 2xn4_A 139 VAPMNT--RRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS-GA-GVG-VLNNLLYAVGGH 213 (302)
T ss_dssp ECCCSS--CCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCB-SC-EEE-EETTEEEEECCB
T ss_pred cCCCCC--cccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccc-cc-cEE-EECCEEEEECCC
Confidence 112221 111112334567777777643 3588899877652 222221111 11 222 236777777775
Q ss_pred cc
Q 031924 144 SL 145 (150)
Q Consensus 144 ~~ 145 (150)
+.
T Consensus 214 ~~ 215 (302)
T 2xn4_A 214 DG 215 (302)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.65 Score=33.67 Aligned_cols=133 Identities=11% Similarity=-0.011 Sum_probs=71.7
Q ss_pred eeecCcceE-EEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec--CCCeEEEEEccccccccccccc
Q 031924 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 2 ~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++++.+..| ++-...+.|.+.++..................+++.|....|+... ..+.|...++. +.....+..
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--G~~~~~l~~ 163 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD--GSERTTLVP 163 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEEC
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--CCceEEEEC
Confidence 455544444 4445677888888875433222223445678999998655555544 25677777764 332222222
Q ss_pred ccccceeEee-ecCCC-EEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 79 LSPNSVDALL-KLDED-RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
.-.....+. .++++ +..+-...+.|..+|+..... +.+..... ....+++.. +.++.+
T Consensus 164 -~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~~-~~ly~t 223 (628)
T 4a0p_A 164 -NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLP-HPFGLTQYQ-DYIYWT 223 (628)
T ss_dssp -SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCS-CEEEEEEET-TEEEEE
T ss_pred -CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCC-CceEEEEEC-CEEEEe
Confidence 233345555 66544 445555677899998854322 22222222 244566654 344443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.73 Score=34.05 Aligned_cols=126 Identities=13% Similarity=0.133 Sum_probs=71.6
Q ss_pred EEEEcCCCeEEEEEcCCCeeeeee---ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc--cccccce
Q 031924 10 LLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV--GLSPNSV 84 (150)
Q Consensus 10 l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~--~~~~~~v 84 (150)
|..|+.++-|..||..+++..... ......|.++...++|. |..|+.++-+..++... ++ ...+. ......|
T Consensus 376 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~v 452 (781)
T 3v9f_A 376 LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRL-KK-FQIIELEKNELLDV 452 (781)
T ss_dssp EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSS-CE-EEECCSTTTCCCCE
T ss_pred EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCC-Cc-EEEeccCCCCCCeE
Confidence 444555556888887655332211 12235788888777666 55577766788888642 22 12221 1024567
Q ss_pred eEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCC-----CCcceeEEEEcCCccEEEec
Q 031924 85 DALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEH-----SEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 85 ~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~s~ 141 (150)
.++. ..++++.+ |+. +-+..+|..+++........ .. .|.++..+++|++.+..
T Consensus 453 ~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~-~i~~i~~d~~g~lWigt 512 (781)
T 3v9f_A 453 RVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLEN-FVRSIAQDSEGRFWIGT 512 (781)
T ss_dssp EEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCS-CEEEEEECTTCCEEEEE
T ss_pred EEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccc-eeEEEEEcCCCCEEEEE
Confidence 7776 45555444 444 45888888765533222111 23 48899999988865543
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.4 Score=30.89 Aligned_cols=131 Identities=8% Similarity=-0.085 Sum_probs=66.6
Q ss_pred ceEEEEcC--CCeEEEEEcCCCeeeee--eccCCCcEEEEEEEeCCCEEEeecCC----CeEEEEEccccc-cccccccc
Q 031924 8 MKLLGTSG--DGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYFK-DCSDRFVG 78 (150)
Q Consensus 8 ~~l~~~~~--d~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~~~~~~~-~~~~~~~~ 78 (150)
.+++.|+. ...+.+||..+++-... +......-..+ ..++..++.|+.+ ..+.+||..... .....++.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV--FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE--EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE--EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555543 46789999988754321 11111111122 2366777777754 678888875321 11112221
Q ss_pred ccccceeEeeecCCCEEEEecCC------CcEEEEeccCCee--eeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 79 LSPNSVDALLKLDEDRVITGSEN------GLISLVGILPNRI--IQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
+..-.++...++++++.|+.+ ..+.+||+.+.+- +..+..... -.+++ ..++++++.|+...
T Consensus 91 --~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~--~~~~~-~~~~~iyv~GG~~~ 160 (306)
T 3ii7_A 91 --PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC--SHGMV-EANGLIYVCGGSLG 160 (306)
T ss_dssp --CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCB--SCEEE-EETTEEEEECCEES
T ss_pred --cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcc--eeEEE-EECCEEEEECCCCC
Confidence 111112334467788888765 4688899877652 222211111 11222 23677777777543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.48 Score=31.29 Aligned_cols=124 Identities=7% Similarity=-0.019 Sum_probs=57.6
Q ss_pred CeEEEEEcCCCeeeee--eccCCCcEEEEEEEeCCCEEEeecC------CCeEEEEEc--cccc-ccccccccccccc-e
Q 031924 17 GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSW--GYFK-DCSDRFVGLSPNS-V 84 (150)
Q Consensus 17 ~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~~~--~~~~-~~~~~~~~~~~~~-v 84 (150)
+.+.+||..+.+-... +......-.+++. -+++.++.|+. ...+..||+ .... ..+..+.. .... -
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~-~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSS-PDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSST-TTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCC-Cccccc
Confidence 5789999988653322 2111111022222 35666666653 235666775 2111 11112211 1111 1
Q ss_pred eEeeecCCCEEEEecCC----------------------CcEEEEeccCCe--eeeeccCCCCcceeEEEEcCCccEEEe
Q 031924 85 DALLKLDEDRVITGSEN----------------------GLISLVGILPNR--IIQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 85 ~~~~~~~~~~l~~~~~d----------------------g~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
.++...++.+++.|+.+ ..+.+||+.+.+ .+..+..... ...+...++++++.
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~---~~~~~~~~~~i~v~ 322 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA---YGVSLPWNNSLLII 322 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB---SSEEEEETTEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc---cceeEEeCCEEEEE
Confidence 12335567788887742 257788887654 3333322211 12223356778787
Q ss_pred ccccc
Q 031924 141 GFLSL 145 (150)
Q Consensus 141 ~~~~~ 145 (150)
|+.+.
T Consensus 323 GG~~~ 327 (357)
T 2uvk_A 323 GGETA 327 (357)
T ss_dssp EEECG
T ss_pred eeeCC
Confidence 77654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.53 Score=30.45 Aligned_cols=121 Identities=10% Similarity=-0.002 Sum_probs=59.1
Q ss_pred CeEEEEEcCCCeeeee--eccCCCcEEEEEEEeCCCEEEeecCC-----CeEEEEEccccc-ccccccccccccceeEee
Q 031924 17 GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFK-DCSDRFVGLSPNSVDALL 88 (150)
Q Consensus 17 ~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~ 88 (150)
..+.+||..+.+-... +.........+ .-+++.++.|+.+ ..+.+||..... .....++. ... -.+..
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~-~~~~~ 165 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVG--VIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT-RRI-GVGVA 165 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEE--EETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS-CCB-SCEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEE--EECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc-ccc-ceEEE
Confidence 4678889887653321 11111111222 2266777777643 357888875322 11222221 111 11223
Q ss_pred ecCCCEEEEecCC-----CcEEEEeccCCeee--eeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 89 KLDEDRVITGSEN-----GLISLVGILPNRII--QPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 89 ~~~~~~l~~~~~d-----g~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
..++.+++.|+.+ ..+..||+.+.+-. ..+..... .- +++. -++++++.|+.+
T Consensus 166 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~-~~~~-~~~~iyv~GG~~ 225 (308)
T 1zgk_A 166 VLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS-GA-GVCV-LHNCIYAAGGYD 225 (308)
T ss_dssp EETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB-SC-EEEE-ETTEEEEECCBC
T ss_pred EECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc-cc-eEEE-ECCEEEEEeCCC
Confidence 3467777887754 45888998766522 22211111 12 2222 267777777654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.82 Score=29.62 Aligned_cols=120 Identities=10% Similarity=0.005 Sum_probs=57.3
Q ss_pred EEEEEcCCCeeeeeeccCCCcE-EEEEEEeCCCEEEeecCC--------CeEEEEEccccc-ccccccccccccceeEee
Q 031924 19 LSVCNLRKNTVQTRSEFSEEEL-TSVVLMKNGRKVVCGSQS--------GTVLLYSWGYFK-DCSDRFVGLSPNSVDALL 88 (150)
Q Consensus 19 i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d--------~~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~ 88 (150)
+.+||..+++-...-....... .+++ .-++..++.|+.+ ..+.+||..... +....++. +..-.++.
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~ 145 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLG-EALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY--VVYGHTVL 145 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEE-EETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS--CCBSCEEE
T ss_pred eEEecCCCCeEEECCCCCcchhceeEE-EECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC--cccceeEE
Confidence 7788888765322111111111 1122 2256666777632 458888875322 12222221 11111233
Q ss_pred ecCCCEEEEecC-C-----CcEEEEeccCCee--eeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 89 KLDEDRVITGSE-N-----GLISLVGILPNRI--IQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 89 ~~~~~~l~~~~~-d-----g~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
..++++++.|+. + ..+..||+.+.+- +..+..... -.+++ .-++++++.|+.+
T Consensus 146 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~-~~~~~iyv~GG~~ 206 (315)
T 4asc_A 146 SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS--LFGAT-VHDGRIIVAAGVT 206 (315)
T ss_dssp EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCB--SCEEE-EETTEEEEEEEEC
T ss_pred EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchh--ceEEE-EECCEEEEEeccC
Confidence 456777888876 2 3688899877642 222211111 11222 2366777777654
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.4 Score=34.53 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=38.6
Q ss_pred CeeecCcceEEEEcCC------------CeEEEEEcCCCeeeeeeccC-CCcEEEEEEEeCCCEEEee
Q 031924 1 MTFAADAMKLLGTSGD------------GTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCG 55 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d------------~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 55 (150)
|+|+|.|+++++...+ +.+.+.+..+++....+... ..+++.++|+||++.|++.
T Consensus 481 L~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4688889877776432 35666677777665544443 5689999999998877654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.08 E-value=1.1 Score=29.00 Aligned_cols=119 Identities=8% Similarity=-0.035 Sum_probs=56.1
Q ss_pred EEEEEcCCCeeeee--eccCCCcEEEEEEEeCCCEEEeecCC-------CeEEEEEccccc-ccccccccccccceeEee
Q 031924 19 LSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQS-------GTVLLYSWGYFK-DCSDRFVGLSPNSVDALL 88 (150)
Q Consensus 19 i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~ 88 (150)
+..||..+++-... +....... +++. -++..++.|+.+ ..+.+||..... .....++. ... -.++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~-~~~~~ 155 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLF-GLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI-KVY-GHNVI 155 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSC-EEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS-CEE-SCEEE
T ss_pred EEEEeCCCCcEEECCCCCcccccc-ceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC-ccc-ccEEE
Confidence 77888877653321 11111111 2222 256666777653 357778875321 11112221 111 11222
Q ss_pred ecCCCEEEEecC------CCcEEEEeccCCee--eeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 89 KLDEDRVITGSE------NGLISLVGILPNRI--IQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 89 ~~~~~~l~~~~~------dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
..++.+++.|+. ...+..||+.+.+- +..+..... -.+++. -++++++.|+.+
T Consensus 156 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~~-~~~~iyv~GG~~ 216 (318)
T 2woz_A 156 SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS--MFGVAI-HKGKIVIAGGVT 216 (318)
T ss_dssp EETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCB--SCEEEE-ETTEEEEEEEEE
T ss_pred EECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcc--cceEEE-ECCEEEEEcCcC
Confidence 456777777764 23588999977652 222211111 112222 356777777653
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.95 E-value=1.3 Score=29.23 Aligned_cols=83 Identities=8% Similarity=0.016 Sum_probs=37.6
Q ss_pred CeEEEEEccccc-ccccccccccccce-eEeeecCCCEEEEecC------CCcEEEEec--cCCe--eeeeccCCCCcce
Q 031924 59 GTVLLYSWGYFK-DCSDRFVGLSPNSV-DALLKLDEDRVITGSE------NGLISLVGI--LPNR--IIQPIAEHSEYPI 126 (150)
Q Consensus 59 ~~i~i~~~~~~~-~~~~~~~~~~~~~v-~~~~~~~~~~l~~~~~------dg~i~~~d~--~~~~--~~~~~~~~~~~~i 126 (150)
..+.+||..... .....++. .... .++...++++++.|+. ...+..+|+ .+.+ .+..+..... ..
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~--~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~-~~ 244 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPW--YGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG-VA 244 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSS--CCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC-CB
T ss_pred ccEEEEeCCCCcEEECCCCCC--CCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc-cc
Confidence 478889875322 11222221 1111 2333456777777764 345777776 3333 1222211111 11
Q ss_pred eEEEEcCCccEEEecccc
Q 031924 127 ESLGIASVLCFINSGFLS 144 (150)
Q Consensus 127 ~~~~~~~~~~~l~s~~~~ 144 (150)
...+...++++++.|+.+
T Consensus 245 ~~~~~~~~~~iyv~GG~~ 262 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGAG 262 (357)
T ss_dssp SCEEEEETTEEEEECCEE
T ss_pred cceEEEECCEEEEEcCcc
Confidence 222334466777777743
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=92.42 E-value=1.6 Score=29.18 Aligned_cols=110 Identities=6% Similarity=-0.102 Sum_probs=59.4
Q ss_pred eccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccc--cccc----ccccccceeEee-ecC----CCEEEEe--c
Q 031924 33 SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC--SDRF----VGLSPNSVDALL-KLD----EDRVITG--S 99 (150)
Q Consensus 33 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~--~~~~----~~~~~~~v~~~~-~~~----~~~l~~~--~ 99 (150)
+...-.....++|.|+|+.+++--..|.|++++... ++. +..+ .. .......++ +|+ +.+.++- .
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~-g~~~~v~~~~~v~~~-g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKT-GRKTELGEVPGVSPS-GEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECTTCCCB-TTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCC-CcEeeecccCceeec-CCCCceeeEeccccccCCEEEEEEecC
Confidence 333345678999999999777775589999987532 221 1111 11 233445555 553 4333332 2
Q ss_pred CCCcEEEEeccCC----------e-eeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 100 ENGLISLVGILPN----------R-IIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 100 ~dg~i~~~d~~~~----------~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
.++.|.-|....+ + .+..+.....-....++|.|||.+.++-+..
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~ 160 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGES 160 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCT
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCC
Confidence 3445555654331 1 1122221111014579999999987775543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=92.28 E-value=2 Score=29.83 Aligned_cols=107 Identities=8% Similarity=-0.010 Sum_probs=55.6
Q ss_pred CCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-ccccccccc-----cccceeEee-ecC---CCEE-EEecC-----
Q 031924 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRFVGL-----SPNSVDALL-KLD---EDRV-ITGSE----- 100 (150)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~-----~~~~v~~~~-~~~---~~~l-~~~~~----- 100 (150)
......++|.|+|+.+++-...+.|++++..... ..+..+... .......++ .|+ +..| ++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4456799999999977776544578888753111 111112110 123344555 653 4444 44332
Q ss_pred -------CCcEEEEeccCC-------e-eeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 101 -------NGLISLVGILPN-------R-IIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 101 -------dg~i~~~d~~~~-------~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
...|.-++.... + .+..+.....-....|+|.|||.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555554321 1 122222111112778999999998776554
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=92.02 E-value=2.7 Score=30.86 Aligned_cols=135 Identities=9% Similarity=0.040 Sum_probs=69.9
Q ss_pred CcceEEEEcCC----CeEEEEEcCCCeeeeee-c------cCCCcEEEEEEEe-CCCEEEeecCC------CeEEEEEcc
Q 031924 6 DAMKLLGTSGD----GTLSVCNLRKNTVQTRS-E------FSEEELTSVVLMK-NGRKVVCGSQS------GTVLLYSWG 67 (150)
Q Consensus 6 ~~~~l~~~~~d----~~i~i~d~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~i~~~~ 67 (150)
++..++.|+.+ +.+.+||..+++-...- . .....-.+++..+ ++..++.|+.+ ..+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 44555555532 46888998877543222 1 1111122333333 67777777643 357788875
Q ss_pred ccc-ccccccccccccceeEeee-cCCCEEEEecCCC--cEEEEeccCCeeeee-----ccCCCCcceeEEEEcCC-ccE
Q 031924 68 YFK-DCSDRFVGLSPNSVDALLK-LDEDRVITGSENG--LISLVGILPNRIIQP-----IAEHSEYPIESLGIASV-LCF 137 (150)
Q Consensus 68 ~~~-~~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~dg--~i~~~d~~~~~~~~~-----~~~~~~~~i~~~~~~~~-~~~ 137 (150)
... .....++. .... .+... .++.+++.|+.++ .+.+||+.+.+-... ...... ....+.+..+ +++
T Consensus 477 t~~W~~~~~~p~-~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~-~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 477 TREWSMIKSLSH-TRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL-VSAGLEFDPVSKQG 553 (695)
T ss_dssp TTEEEECCCCSB-CCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCC-BSCEEEEETTTTEE
T ss_pred CCcEEECCCCCC-Cccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccc-ceeEEEEeCCCCEE
Confidence 421 11122221 1111 12233 4788888888655 689999877652211 111111 1333555655 778
Q ss_pred EEeccc
Q 031924 138 INSGFL 143 (150)
Q Consensus 138 l~s~~~ 143 (150)
++.|+.
T Consensus 554 yv~GG~ 559 (695)
T 2zwa_A 554 IILGGG 559 (695)
T ss_dssp EEECCB
T ss_pred EEECCc
Confidence 887776
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=90.17 E-value=1.8 Score=31.22 Aligned_cols=55 Identities=11% Similarity=0.168 Sum_probs=37.6
Q ss_pred CeeecCcceEEEEcC------------CCeEEEEEcCCCeeeeeeccC-CCcEEEEEEEeCCCEEEee
Q 031924 1 MTFAADAMKLLGTSG------------DGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCG 55 (150)
Q Consensus 1 i~~~~~~~~l~~~~~------------d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 55 (150)
|.|+++|.+.++... .+.+..++..+++....+... ...++.++|+||++.|++.
T Consensus 481 L~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 467788877775432 225677777777665544433 4578999999999888665
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=90.09 E-value=4.4 Score=29.80 Aligned_cols=137 Identities=11% Similarity=0.055 Sum_probs=67.4
Q ss_pred CcceEEEEcCC------CeEEEEEcCCCeeeee--eccCCCcEEEEEEEeCCCEEEeecCCC--eEEEEEccccc-cccc
Q 031924 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFK-DCSD 74 (150)
Q Consensus 6 ~~~~l~~~~~d------~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~i~~~~~~~-~~~~ 74 (150)
+++.++.|+.+ +.+.+||..+.+-... +.... .-.+++...++..++.|+.++ .+.+||..... ....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R-~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR-FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC-BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc-ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 55566666532 3577888887643221 11111 112233323778888887654 68889875432 1111
Q ss_pred c---cccccccceeEee-ecC-CCEEEEecC--C-----CcEEEEeccCCee-----eeeccC---CCCcceeEEEEcCC
Q 031924 75 R---FVGLSPNSVDALL-KLD-EDRVITGSE--N-----GLISLVGILPNRI-----IQPIAE---HSEYPIESLGIASV 134 (150)
Q Consensus 75 ~---~~~~~~~~v~~~~-~~~-~~~l~~~~~--d-----g~i~~~d~~~~~~-----~~~~~~---~~~~~i~~~~~~~~ 134 (150)
. .+. ......++. ..+ +.+++.|+. + ..+..||+.+..- ...+.. .... -.++....+
T Consensus 530 ~~g~~p~-~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~-~~~~~~~~~ 607 (695)
T 2zwa_A 530 PKDEFFQ-NSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY-GSQIKYITP 607 (695)
T ss_dssp CSSGGGG-SCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB-SCEEEEEET
T ss_pred CCCCCCC-cccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc-cceEEEeCC
Confidence 1 221 111112222 333 667777775 2 3588899877651 122211 1111 122333344
Q ss_pred ccEEEeccccc
Q 031924 135 LCFINSGFLSL 145 (150)
Q Consensus 135 ~~~l~s~~~~~ 145 (150)
+++++.|+.+.
T Consensus 608 ~~iyv~GG~~~ 618 (695)
T 2zwa_A 608 RKLLIVGGTSP 618 (695)
T ss_dssp TEEEEECCBCS
T ss_pred CEEEEECCccC
Confidence 77777777643
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=89.75 E-value=3.9 Score=28.70 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=49.1
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~ 67 (150)
.++.-..++.-..-|.+++||++++.++..-.-..+.+...+......-+++....|.|.--.++
T Consensus 266 vs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 266 ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp EETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred ecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence 45555677777899999999999999887666556667666666666667777788988777664
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=88.63 E-value=4.9 Score=30.85 Aligned_cols=35 Identities=9% Similarity=0.147 Sum_probs=27.7
Q ss_pred eeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec
Q 031924 84 VDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
+.++. ..+..++++-+.|+++|+|++.+++++...
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 44444 556779999999999999999998876653
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=88.48 E-value=4 Score=27.16 Aligned_cols=56 Identities=5% Similarity=0.064 Sum_probs=35.7
Q ss_pred CCCEEEEecCCCcEEEEeccCCeeeee---ccCCCCcceeEEEEcCCccEEEe-ccccccc
Q 031924 91 DEDRVITGSENGLISLVGILPNRIIQP---IAEHSEYPIESLGIASVLCFINS-GFLSLNV 147 (150)
Q Consensus 91 ~~~~l~~~~~dg~i~~~d~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~s-~~~~~~v 147 (150)
+++++++....+.|...++..++.... +..... .+..+++.|||.++++ -..++.|
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQ-RIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCC-CEEEEEECTTSCEEEEECSTTEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCC-ceeEEEECCCCcEEEEEeCCCCEE
Confidence 467777777778888888876543322 211122 5889999999987764 3334443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.30 E-value=1.2 Score=34.68 Aligned_cols=30 Identities=27% Similarity=0.163 Sum_probs=25.3
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeee
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTR 32 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 32 (150)
..++.+++++-+.|+++|+|++.+++++..
T Consensus 245 ~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 245 FLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp EETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred ccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 345678999999999999999999987654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.52 E-value=4.5 Score=31.63 Aligned_cols=30 Identities=10% Similarity=0.104 Sum_probs=25.6
Q ss_pred ecCCCEEEEecCCCcEEEEeccCCeeeeec
Q 031924 89 KLDEDRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 89 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
..+..++++-+.|+++|+|++.+++++.+.
T Consensus 246 ~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 246 LSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp ETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred cCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 456679999999999999999999877664
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=85.37 E-value=1.4 Score=33.69 Aligned_cols=30 Identities=27% Similarity=0.163 Sum_probs=25.0
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeee
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTR 32 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 32 (150)
..++..++++-+.|+++|+|++.+++++..
T Consensus 243 ~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 243 FLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp EETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred ecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 345677899999999999999999987654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=85.25 E-value=7.9 Score=27.26 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=62.2
Q ss_pred ecCcceEEEEc-------CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC---CCEEEeecC---CCeEEEEEcccc-
Q 031924 4 AADAMKLLGTS-------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN---GRKVVCGSQ---SGTVLLYSWGYF- 69 (150)
Q Consensus 4 ~~~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~---d~~i~i~~~~~~- 69 (150)
+++.++++..+ -.|.+.+|..+.+ ..+.+++|......+...-+ .+.|.-+.. .+++++-++...
T Consensus 159 d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~ 237 (494)
T 1bpo_A 159 DAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP 237 (494)
T ss_dssp CTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCC
T ss_pred CCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCc
Confidence 45666555432 2367889998876 44455666544433322211 112222222 378888887532
Q ss_pred -cc------ccccc-c--cccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeec
Q 031924 70 -KD------CSDRF-V--GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 70 -~~------~~~~~-~--~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
+. ....+ + ....-+|.--.++.-..+..-+.-|.+++||+.++.++..-
T Consensus 238 ~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 238 TGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp TTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred cCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence 11 00101 1 00122232333667778888889999999999999876544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=84.71 E-value=5.6 Score=32.36 Aligned_cols=104 Identities=10% Similarity=0.042 Sum_probs=62.2
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc--
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS-- 80 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~-- 80 (150)
.+|..+.|+.-. ..++.|||+++...++...- ..+|.-=.|..+.. |+-. .+..|..|++.....+.+.|.- |
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~-l~lV-T~~aVyHW~~~~~s~P~k~fdR-~~~ 147 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALV-TDNAVYHWSMEGESQPVKMFDR-HSS 147 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCe-eEEE-cCCeEEEeccCCCCccHHHHhc-chh
Confidence 367777777764 67999999998776665544 34566667765443 3322 2358999998643344444432 3
Q ss_pred --ccceeEee-ecCCCEEEEec-------CCCcEEEEeccC
Q 031924 81 --PNSVDALL-KLDEDRVITGS-------ENGLISLVGILP 111 (150)
Q Consensus 81 --~~~v~~~~-~~~~~~l~~~~-------~dg~i~~~d~~~ 111 (150)
...|.... +++.++++..+ -.|.+.+|..+.
T Consensus 148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence 22333333 66677665333 347888888753
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=84.18 E-value=15 Score=30.04 Aligned_cols=122 Identities=7% Similarity=0.036 Sum_probs=69.9
Q ss_pred CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEeeecCCCE
Q 031924 15 GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDR 94 (150)
Q Consensus 15 ~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 94 (150)
+..+|.|.|+..+..+.+.. -.--+.-.+|..+.++.- ...++.+||++.. ..++.+.- .+ .|..=...+.+.
T Consensus 46 ~~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k-~klks~~~-~e-~VvfWkWis~~~ 118 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALK-AGKTLQIFNIEMK-SKMKAHTM-TD-DVTFWKWISLNT 118 (1630)
T ss_pred CCceEEEEECCCCCCccccc---ccchhhccCCCcceEEEe-cCCeEEEeehHHh-hhhccccc-CC-CceEEEecCCCe
Confidence 34478888887754331111 111233456766655554 3679999999643 33444333 22 333222555566
Q ss_pred EEEecCCCcEEEEeccC-CeeeeeccCCCC---cceeEEEEcCCccEEEecccc
Q 031924 95 VITGSENGLISLVGILP-NRIIQPIAEHSE---YPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 95 l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~---~~i~~~~~~~~~~~l~s~~~~ 144 (150)
|+-.+ +..|+-|++.. ..+.+.+..|.. ..|.....+++.++++..|.+
T Consensus 119 l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~ 171 (1630)
T 1xi4_A 119 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGIS 171 (1630)
T ss_pred eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeec
Confidence 65554 45899999964 234445544422 237777889999988866653
|
| >3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A | Back alignment and structure |
|---|
Probab=83.73 E-value=2.2 Score=31.61 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=24.6
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeeeeee
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRS 33 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 33 (150)
..+..++++-+.|.++|+|++++++++...
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 345678999999999999999999866443
|
| >3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A | Back alignment and structure |
|---|
Probab=82.83 E-value=3.2 Score=30.83 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=25.3
Q ss_pred ecCCCEEEEecCCCcEEEEeccCCeeeeec
Q 031924 89 KLDEDRVITGSENGLISLVGILPNRIIQPI 118 (150)
Q Consensus 89 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 118 (150)
..+..++++-+.|.++|+|++.+++++...
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 445789999999999999999998866654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 150 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.003 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.001 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.002 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.002 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.1 bits (105), Expect = 6e-07
Identities = 16/128 (12%), Positives = 43/128 (33%), Gaps = 2/128 (1%)
Query: 15 GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74
D + + ++R+ + E ++ ++ NG GS T L+ ++
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS 133
+ ++ ++ G ++ ++ L +A H + LG+
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RVSCLGVTD 322
Query: 134 VLCFINSG 141
+ +G
Sbjct: 323 DGMAVATG 330
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.9 bits (94), Expect = 2e-05
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 5/109 (4%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE--LTSVVLMKNGRKVVCGSQS 58
+ F + S D T + +LR + +TSV K+GR ++ G
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 59 GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL 106
++ + G N V L + D V TGS + + +
Sbjct: 292 FNCNVWDALKAD-RAGVLAGHD-NRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.9 bits (89), Expect = 8e-05
Identities = 10/65 (15%), Positives = 25/65 (38%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
++F+ LL D +V + K + ++ + + +G V GS
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 61 VLLYS 65
+ +++
Sbjct: 336 LKIWN 340
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 8e-05
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+ FA + T D L+ +S+ S + S + + + +V GS
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS-VLSCDISVDDKYIVTGSGDKK 329
Query: 61 VLLYS 65
+Y
Sbjct: 330 ATVYE 334
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.6 bits (88), Expect = 1e-04
Identities = 16/64 (25%), Positives = 26/64 (40%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+ F + +L + D TL V + + E +TS+ K VV GS T
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 312
Query: 61 VLLY 64
V ++
Sbjct: 313 VKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 34.3 bits (77), Expect = 0.003
Identities = 19/161 (11%), Positives = 47/161 (29%), Gaps = 22/161 (13%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-------------- 46
+ D + S D T+ V + + + +
Sbjct: 149 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 208
Query: 47 ------KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSE 100
K G ++ GS+ T+ ++ C VG L +++ ++
Sbjct: 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCAD 267
Query: 101 NGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141
+ + + R ++ + H + SL ++ +G
Sbjct: 268 DKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVVTG 307
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.6 bits (88), Expect = 1e-04
Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 19/159 (11%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEEL-------TSVVLMKNGRKVV 53
D + S D + V + + R + E SVV ++G+ VV
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270
Query: 54 CGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV-----------DALLKLDEDRVITGSENG 102
GS +V L++ + SD S +++ +++GS++
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330
Query: 103 LISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSG 141
+ + + H + S+ +A+
Sbjct: 331 GVLFWDKKSGNPLLMLQGHRN-SVISVAVANGSSLGPEY 368
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.7 bits (83), Expect = 6e-04
Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 21/125 (16%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRK------------NTVQTRSEFSEEELTSVVLMKN 48
+ F D ++ S D ++ + NL+ T + ++ + SV +N
Sbjct: 260 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN 319
Query: 49 GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-------LKLDEDRVITGSEN 101
++ GS+ VL + G NSV ++ L + + TGS +
Sbjct: 320 DEYILSGSKDRGVLFWDKKSGN-PLLMLQGHR-NSVISVAVANGSSLGPEYNVFATGSGD 377
Query: 102 GLISL 106
+
Sbjct: 378 CKARI 382
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 35.6 bits (80), Expect = 0.001
Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSG 59
+T++ D K+ S D T+ + N+ +T + E + ++ + +V S +G
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303
Query: 60 TVLLY 64
+
Sbjct: 304 FINFV 308
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.8 bits (78), Expect = 0.002
Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 4/143 (2%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+ D + ++ S D ++ V ++ + + + L +V G+ T
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADST 238
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
V ++ + S L+ +++ VIT S++G + L + I+ +
Sbjct: 239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT 298
Query: 121 HSEYPIESLGIASVLCFINSGFL 143
S G+ + N+ +
Sbjct: 299 LESGG--SGGVVWRIRASNTKLV 319
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 34.8 bits (78), Expect = 0.002
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 4/64 (6%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
A G G L +++ V LT + L + + V+ G
Sbjct: 282 PVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN----NLTDLRLSADRKTVMVRKDDGK 337
Query: 61 VLLY 64
+ +
Sbjct: 338 IYTF 341
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 150 | |||
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.96 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.96 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.95 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.95 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.95 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.95 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.94 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.94 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.93 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.93 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.92 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.91 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.91 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.91 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.91 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.9 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.9 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.9 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.9 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.9 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.89 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.86 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.86 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.83 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.77 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.76 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.76 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.75 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.74 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.73 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.72 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.67 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.65 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.64 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.6 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.52 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.43 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.4 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.33 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.27 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.18 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.05 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.02 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.02 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.93 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.93 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.83 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.8 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.79 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.73 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.7 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.67 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.67 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.6 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.55 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.44 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.44 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.42 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.22 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.2 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.17 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.13 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.95 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.84 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.77 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.5 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.49 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.47 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.38 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.33 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.15 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.0 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.96 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.87 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.82 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.23 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.88 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 94.54 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.44 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 94.41 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.02 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 93.89 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.84 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 93.54 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.14 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 92.11 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 92.08 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 91.68 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 91.42 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 88.38 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 88.17 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 87.29 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 82.36 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 82.23 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 81.67 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=2.3e-28 Score=158.98 Aligned_cols=143 Identities=13% Similarity=0.167 Sum_probs=127.0
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccc--cccc
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF--VGLS 80 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~ 80 (150)
+.+...++++++.|+.|++||+++++.+..+..|...|++++|+|++++|++++.|+.+++|+++.. .....+ .. +
T Consensus 192 ~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~~~~-~ 269 (340)
T d1tbga_ 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYSHDN-I 269 (340)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTT-C
T ss_pred cccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc-cccccccccc-c
Confidence 4567889999999999999999999999999999999999999999999999999999999998644 333322 34 5
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.++. ++++++|++|+.||.|++||+.+++.+..+..|.. +|.+++|+|++++|++|+.++.|.
T Consensus 270 ~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~-~V~~l~~s~d~~~l~s~s~Dg~v~ 337 (340)
T d1tbga_ 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLK 337 (340)
T ss_dssp CSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTSCEE
T ss_pred cCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEccCCEEE
Confidence 66788877 88999999999999999999999999999999988 699999999999999999998875
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=3.1e-28 Score=161.50 Aligned_cols=146 Identities=9% Similarity=0.074 Sum_probs=122.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe--eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-ccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~ 77 (150)
++|+|++++|++++.|+.|++||.++++ .+..+.+|.++|.+++|+|++++|++++.|++|++||+.... .....+.
T Consensus 13 ~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~ 92 (371)
T d1k8kc_ 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL 92 (371)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECC
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccc
Confidence 4799999999999999999999998775 456778999999999999999999999999999999986432 2334455
Q ss_pred cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCe----eeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+ |...+.++. +|+++.+++++.|+.+++|++.... .......|.. .|.+++|+|++++|++|+.++.|.
T Consensus 93 ~-~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~p~~~~l~s~s~D~~v~ 166 (371)
T d1k8kc_ 93 R-INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS-TVLSLDWHPNSVLLAAGSCDFKCR 166 (371)
T ss_dssp C-CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred c-ccccccccccccccccceeecccCcceeeeeeccccccccccccccccc-ccccccccccccceeccccCcEEE
Confidence 6 788899988 8999999999999999999886543 2333456666 699999999999999999887653
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=1.3e-27 Score=155.41 Aligned_cols=145 Identities=10% Similarity=0.129 Sum_probs=126.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee--eeeccCCCcEEEEEEEeCCCEEEeecC--CCeEEEEEccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRF 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~ 76 (150)
++|+|++++|++|+.||+|++||+..++.. ..+..|..+|.+++|+|+++++++++. +..+++|+++ .++...++
T Consensus 64 ~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~-~~~~~~~l 142 (311)
T d1nr0a1 64 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD-TGTSNGNL 142 (311)
T ss_dssp EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT-TCCBCBCC
T ss_pred EEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccc-cccccccc
Confidence 479999999999999999999999887543 456788999999999999999988875 4669999986 44677788
Q ss_pred ccccccceeEee-ecCCC-EEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 77 VGLSPNSVDALL-KLDED-RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 77 ~~~~~~~v~~~~-~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+ |...|.++. +|+++ .+++|+.|+.|++||+++++....+..|.. +|.++.|+|+++++++++.++.|.
T Consensus 143 ~~-h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~-~i~~v~~~p~~~~l~~~~~d~~v~ 214 (311)
T d1nr0a1 143 TG-QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK-FVHSVRYNPDGSLFASTGGDGTIV 214 (311)
T ss_dssp CC-CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred cc-cccccccccccccceeeecccccccccccccccccccccccccccc-cccccccCcccccccccccccccc
Confidence 88 999999987 77777 588899999999999999999999988888 699999999999999999887764
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=4e-27 Score=151.22 Aligned_cols=145 Identities=14% Similarity=0.207 Sum_probs=131.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCC--------------------CEEEeecCCCe
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG--------------------RKVVCGSQSGT 60 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~~l~~~~~d~~ 60 (150)
++|+|++++|++++.|+.+++|+..+++....+..+...+.++.|+|++ ..+++++.|+.
T Consensus 149 ~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 228 (317)
T d1vyhc1 149 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228 (317)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred eecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE
Confidence 3688999999999999999999999999888888899999999988653 46889999999
Q ss_pred EEEEEcccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEE
Q 031924 61 VLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFIN 139 (150)
Q Consensus 61 i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (150)
+++||++ .++.+.++.+ |...+.++. ++++++|++++.||.|++||+.+++.+..+..|.. +|++++|+|++++|+
T Consensus 229 i~~~~~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~-~V~~~~~s~~~~~l~ 305 (317)
T d1vyhc1 229 IKMWDVS-TGMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVV 305 (317)
T ss_dssp EEEEETT-TTEEEEEEEC-CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS-CEEEEEECSSSSCEE
T ss_pred EEEEECC-CCcEEEEEeC-CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEE
Confidence 9999986 4577788888 999999888 88999999999999999999999999999999988 699999999999999
Q ss_pred ecccccccc
Q 031924 140 SGFLSLNVN 148 (150)
Q Consensus 140 s~~~~~~v~ 148 (150)
+|+.++.|.
T Consensus 306 s~s~Dg~i~ 314 (317)
T d1vyhc1 306 TGSVDQTVK 314 (317)
T ss_dssp EEETTSEEE
T ss_pred EEeCCCeEE
Confidence 999998775
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=6.5e-27 Score=152.09 Aligned_cols=146 Identities=16% Similarity=0.118 Sum_probs=122.6
Q ss_pred CeeecCcce-EEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccc-----
Q 031924 1 MTFAADAMK-LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD----- 74 (150)
Q Consensus 1 i~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~----- 74 (150)
++|+|++++ +++++.|+.|++||+++++.......|..+++++.|+|+++++++++.|+.+++||+... ....
T Consensus 152 v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~ 230 (311)
T d1nr0a1 152 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG-TKTGVFEDD 230 (311)
T ss_dssp EEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEECBCT
T ss_pred ccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccc-ccccccccc
Confidence 468999885 778899999999999999998888999999999999999999999999999999998643 2222
Q ss_pred --ccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 75 --RFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 75 --~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+ |...|.++. ++++++|++|+.||.|++||++++++++.+..|.......+.+.+++++|++++.++.|.
T Consensus 231 ~~~~~~-h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~ 306 (311)
T d1nr0a1 231 SLKNVA-HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN 306 (311)
T ss_dssp TSSSCS-SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEE
T ss_pred cccccc-ccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEE
Confidence 2335 788899988 889999999999999999999999999888766543344556666777899999998875
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=7.4e-28 Score=160.76 Aligned_cols=138 Identities=12% Similarity=0.119 Sum_probs=113.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeee------eccCCCcEEEEEEEeCCCEEEeecCCC---eEEEEEcccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTR------SEFSEEELTSVVLMKNGRKVVCGSQSG---TVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~i~~~~~~~~ 71 (150)
++|+|++ +|++|+.|++|++||+++++.+.. +.+|..+|.+++|+|+|++|++|+.|+ .+++||++. ++
T Consensus 190 v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~-g~ 267 (393)
T d1sq9a_ 190 VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GE 267 (393)
T ss_dssp EEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CC
T ss_pred EEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccccc-ce
Confidence 3678887 889999999999999999876543 346788999999999999999999886 489999853 33
Q ss_pred cccc-------------cccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCccee----EEEEcC
Q 031924 72 CSDR-------------FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE----SLGIAS 133 (150)
Q Consensus 72 ~~~~-------------~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~----~~~~~~ 133 (150)
.+.. +.+ |...|.++. +|++++|++++.|++|++||++++++++++.+|.+ +|. .++|+|
T Consensus 268 ~~~~l~~~~~~~~~~~~~~g-H~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~-~v~~~~~~~~~~~ 345 (393)
T d1sq9a_ 268 RIGSLSVPTHSSQASLGEFA-HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD-DIEIEEDILAVDE 345 (393)
T ss_dssp EEEEECBC--------CCBS-BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG-GCSSGGGCCCBCT
T ss_pred eeeeeccccccccceeeeec-ccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCC-cccCCccEEEECC
Confidence 3332 347 889999998 89999999999999999999999999999998876 354 477888
Q ss_pred CccEEEecc
Q 031924 134 VLCFINSGF 142 (150)
Q Consensus 134 ~~~~l~s~~ 142 (150)
++..+++++
T Consensus 346 ~~~~~~~~~ 354 (393)
T d1sq9a_ 346 HGDSLAEPG 354 (393)
T ss_dssp TSCBCSSCC
T ss_pred CCCEEEEcc
Confidence 888777665
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=2.7e-26 Score=149.13 Aligned_cols=146 Identities=16% Similarity=0.195 Sum_probs=121.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc---ccccc-
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD---CSDRF- 76 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~---~~~~~- 76 (150)
|+|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++.++++++.|+.+++|+...... ....+
T Consensus 61 l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 140 (340)
T d1tbga_ 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 140 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEEC
T ss_pred EEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecc
Confidence 57999999999999999999999999999999999999999999999999999999999999998643210 00000
Q ss_pred ----------------------------------------ccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeee
Q 031924 77 ----------------------------------------VGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRII 115 (150)
Q Consensus 77 ----------------------------------------~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~ 115 (150)
.. +...+.... .+.+.++++++.|+.|++||+++++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~ 219 (340)
T d1tbga_ 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219 (340)
T ss_dssp CCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccc-cceeEeeeccccccceeEEeecCceEEEEECCCCcEE
Confidence 01 122233333 556778999999999999999999999
Q ss_pred eeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 116 QPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 116 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
..+..|.. +|.+++|+|++++|++|+.++.|.
T Consensus 220 ~~~~~h~~-~i~~v~~~p~~~~l~s~s~d~~i~ 251 (340)
T d1tbga_ 220 QTFTGHES-DINAICFFPNGNAFATGSDDATCR 251 (340)
T ss_dssp EEECCCSS-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEeCCCC-CeEEEEECCCCCEEEEEeCCCeEE
Confidence 99989988 699999999999999999988764
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.4e-26 Score=150.49 Aligned_cols=145 Identities=14% Similarity=0.203 Sum_probs=123.1
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCee-----eeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc-cccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV-----QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSD 74 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~ 74 (150)
++|+|++++|++|+ ||.|+|||+.+++. ......|.+.|.+++|+|++++|++++.||+|++||+.... +...
T Consensus 57 v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 135 (337)
T d1gxra_ 57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135 (337)
T ss_dssp EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred EEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccc
Confidence 57999999999986 89999999976532 22345788899999999999999999999999999986432 4455
Q ss_pred ccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+.. |...+..+. ++++..+++++.|+.+++|++.+++.......|.. ++.+++|++++..+++|+.++.+.
T Consensus 136 ~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~-~v~~l~~s~~~~~~~~~~~d~~v~ 208 (337)
T d1gxra_ 136 ELTS-SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLDNTVR 208 (337)
T ss_dssp EEEC-SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEE
T ss_pred cccc-ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 6667 888888877 88999999999999999999999998888888877 699999999999999999887653
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.5e-26 Score=150.39 Aligned_cols=142 Identities=15% Similarity=0.083 Sum_probs=123.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+++++.+++++.|+.+++||+++++.+... .+.+.+.+++|+|+++++++++.|+.+++||++.. +. ..... |
T Consensus 189 l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~-~~-~~~~~-~ 264 (337)
T d1gxra_ 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-DK-YQLHL-H 264 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-CE-EEECC-C
T ss_pred ccccccccccccccccccccccccccceeeccc-ccccceEEEEEcccccccceecccccccccccccc-cc-ccccc-c
Confidence 468899999999999999999999999877655 46789999999999999999999999999998643 32 23445 8
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...|.++. ++++++|++++.||.|++||..+++.+..+ .|.. +|.+++|+|++++|++|+.++.|.
T Consensus 265 ~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~-~v~~~~~s~d~~~l~t~s~D~~I~ 331 (337)
T d1gxra_ 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESS-SVLSCDISVDDKYIVTGSGDKKAT 331 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSS-CEEEEEECTTSCEEEEEETTSCEE
T ss_pred ccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCC-CEEEEEEeCCCCEEEEEeCCCeEE
Confidence 88999988 899999999999999999999999888776 4556 699999999999999999988775
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=2.2e-25 Score=147.66 Aligned_cols=146 Identities=13% Similarity=0.050 Sum_probs=119.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCee--eeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc---cccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD---CSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~---~~~~ 75 (150)
|+|+|++++|++++.|++|++||+..+.. ...+..+...+.+++|+|+++.|++++.|+++++|++..... ....
T Consensus 57 l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~ 136 (371)
T d1k8kc_ 57 VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 136 (371)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccc
Confidence 47999999999999999999999987654 344567788999999999999999999999999999864322 1223
Q ss_pred cccccccceeEee-ecCCCEEEEecCCCcEEEEeccCC------------------eeeeeccCCCCcceeEEEEcCCcc
Q 031924 76 FVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPN------------------RIIQPIAEHSEYPIESLGIASVLC 136 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~ 136 (150)
... |...|.++. +|++++|++++.|+.+++|+.... +.+.....|.. .|.+++|+|+++
T Consensus 137 ~~~-~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~ 214 (371)
T d1k8kc_ 137 KKP-IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGS 214 (371)
T ss_dssp CTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSS
T ss_pred ccc-cccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccC-cEEEEEeecccc
Confidence 345 778888887 889999999999999999997532 23344456666 599999999999
Q ss_pred EEEecccccccc
Q 031924 137 FINSGFLSLNVN 148 (150)
Q Consensus 137 ~l~s~~~~~~v~ 148 (150)
+|++++.++.|.
T Consensus 215 ~l~s~~~d~~i~ 226 (371)
T d1k8kc_ 215 RVAWVSHDSTVC 226 (371)
T ss_dssp EEEEEETTTEEE
T ss_pred cccccccCCcce
Confidence 999999887664
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=2.5e-25 Score=142.76 Aligned_cols=145 Identities=14% Similarity=0.196 Sum_probs=130.2
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
|+|+|++++|++++.|++|++||+++++.+..+..|...|.+++|+|++..++++..++.+..|+... .+....+.. |
T Consensus 23 l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 100 (317)
T d1vyhc1 23 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-FECIRTMHG-H 100 (317)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS-SCEEECCCC-C
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccc-ccccccccc-c
Confidence 57999999999999999999999999999999999999999999999999999999999999999753 355555666 7
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.++. .++++.+++++.|+.+++||+++++.+..+..|.. .+.+++|+|++.++++++.++.|.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~v~ 168 (317)
T d1vyhc1 101 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-WVRMVRPNQDGTLIASCSNDQTVR 168 (317)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC-cceeeecccCCCEEEEEeCCCeEE
Confidence 77788777 88999999999999999999999998888888888 599999999999999999887764
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=4.3e-25 Score=146.19 Aligned_cols=143 Identities=16% Similarity=0.252 Sum_probs=118.2
Q ss_pred ecCcceEEEEcCCCeEEEEEcCCCeeeeee-------ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc-----
Q 031924 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRS-------EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD----- 71 (150)
Q Consensus 4 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~----- 71 (150)
.+++++|++++.|+.|++||.++++....+ ..|.+.|.+++|+|++++|++++.|+.+++||++....
T Consensus 214 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 293 (388)
T d1erja_ 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293 (388)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccc
Confidence 347889999999999999999988765443 35678899999999999999999999999999863321
Q ss_pred ------cccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEE------cCCccEE
Q 031924 72 ------CSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGI------ASVLCFI 138 (150)
Q Consensus 72 ------~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~l 138 (150)
....... |...+.++. ++++++|++|+.||.|++||+++++.+..+..|.+ +|.++++ +|++.+|
T Consensus 294 ~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~-~V~~~~~~~~~~~spd~~~l 371 (388)
T d1erja_ 294 TPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-SVISVAVANGSSLGPEYNVF 371 (388)
T ss_dssp -----CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSCTTCTTCEEE
T ss_pred cccccceeeeccc-ccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC-CEEEEEEecCcccCCCCCEE
Confidence 1222334 677888887 88999999999999999999999999999999988 6998874 6799999
Q ss_pred Eecccccccc
Q 031924 139 NSGFLSLNVN 148 (150)
Q Consensus 139 ~s~~~~~~v~ 148 (150)
++|+.++.|.
T Consensus 372 ~s~s~Dg~I~ 381 (388)
T d1erja_ 372 ATGSGDCKAR 381 (388)
T ss_dssp EEEETTSEEE
T ss_pred EEEeCCCEEE
Confidence 9999998775
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1e-24 Score=141.06 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=56.8
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCee---eeeeccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV---QTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~ 67 (150)
|+|+|++++|++++.|++|++||++.++. ......|..+|.+++|+|+ +..|++|+.|+.+++|++.
T Consensus 17 l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~ 87 (342)
T d1yfqa_ 17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred EEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecc
Confidence 58999999999999999999999976543 2333468899999999997 5578999999999999975
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.93 E-value=1.8e-24 Score=139.05 Aligned_cols=146 Identities=20% Similarity=0.152 Sum_probs=116.6
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeee-eeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccc--ccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRFV 77 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~ 77 (150)
++|+|+++++++++.|+.|++||+++++... ....|...+++++|+|+++++++++.|+.+++||+.... .....+.
T Consensus 142 ~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~ 221 (299)
T d1nr0a2 142 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWT 221 (299)
T ss_dssp EEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4689999999999999999999998876543 345678899999999999999999999999999986432 2234556
Q ss_pred cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCee--eeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRI--IQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+ |...|.++. ++++++|++|+.||.|++||+++... ......|....+..+.| +++++|++|+.++.|.
T Consensus 222 ~-h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~ 293 (299)
T d1nr0a2 222 F-HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIK 293 (299)
T ss_dssp C-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEE
T ss_pred c-cccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEE
Confidence 7 888999987 89999999999999999999986542 33333444435766655 5677899999988774
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.93 E-value=1.5e-24 Score=139.40 Aligned_cols=145 Identities=10% Similarity=0.127 Sum_probs=111.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc----------
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF---------- 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~---------- 69 (150)
++|+|++++|++++.|++|++||+++++....+. .|...|++++|+|+++++ +++.|+.+++|+....
T Consensus 18 l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~ 96 (299)
T d1nr0a2 18 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVAN 96 (299)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEEeccCCccccccccccc
Confidence 5799999999999999999999999988776653 577788888888887644 4456778888875321
Q ss_pred -----------------------------------------------------------------------ccccc-ccc
Q 031924 70 -----------------------------------------------------------------------KDCSD-RFV 77 (150)
Q Consensus 70 -----------------------------------------------------------------------~~~~~-~~~ 77 (150)
++... ...
T Consensus 97 ~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 176 (299)
T d1nr0a2 97 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI 176 (299)
T ss_dssp ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 01000 112
Q ss_pred cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeee---eeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRII---QPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
. |...|.++. +++++++++++.|+.|++||+.++... ..+..|.. +|++++|+|++++|++|+.++.|.
T Consensus 177 ~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~sgs~dg~i~ 249 (299)
T d1nr0a2 177 V-HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVI 249 (299)
T ss_dssp E-CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred c-cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccceEEEcCCCEEE
Confidence 3 667788877 788899999999999999999876543 34456766 699999999999999999988764
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=8.2e-24 Score=137.00 Aligned_cols=140 Identities=15% Similarity=0.217 Sum_probs=112.8
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc--
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL-- 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-- 79 (150)
.++++++++++++.|+.|++||++.++.+.....|...+.++.++ +++|++++.|+.|++||+... +....+...
T Consensus 182 ~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~ 258 (342)
T d2ovrb2 182 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG-QCLQTLQGPNK 258 (342)
T ss_dssp EEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC-CEEEEECSTTS
T ss_pred cccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccc-cccccccccce
Confidence 356688999999999999999999999998899999988887665 569999999999999998643 333333320
Q ss_pred cccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeecc-----CCCCcceeEEEEcCCccEEEecccccc
Q 031924 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIA-----EHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
|...+.++ ..+++++++++.||.|++||+++++.++.+. .|.. +|.+++|+|++.++|+|+.+|.
T Consensus 259 ~~~~~~~~-~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~-~v~~v~~s~~~~~la~g~~dGt 328 (342)
T d2ovrb2 259 HQSAVTCL-QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG-VVWRIRASNTKLVCAVGSRNGT 328 (342)
T ss_dssp CSSCEEEE-EECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC-EEEEEEECSSEEEEEEECSSSS
T ss_pred eeeceeec-ccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCC-CEEEEEECCCCCEEEEEeCCCC
Confidence 34444444 5567899999999999999999998877663 3445 5999999999999999998874
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=3.6e-23 Score=136.86 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=121.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
++|+|++++|++++.|+.|++||...++......+|...+.++.+++++..+++++.++.+++||.+.. ........ +
T Consensus 127 l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~-~ 204 (388)
T d1erja_ 127 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-QCSLTLSI-E 204 (388)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEEC-S
T ss_pred EEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccc-cccccccc-c
Confidence 479999999999999999999999999999888999999999999999999999999999999998633 44444444 4
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeec-------cCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPI-------AEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
...+.... ..++++|++++.|+.|++||..++.....+ ..|.. +|.+++|+|++++|++|+.++.|.
T Consensus 205 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~d~~i~ 279 (388)
T d1erja_ 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVK 279 (388)
T ss_dssp SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEE
T ss_pred cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCC-CEEEEEECCCCCEEEEEECCCcEE
Confidence 44444444 558899999999999999999887765544 24556 699999999999999999888764
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=3.6e-23 Score=132.25 Aligned_cols=144 Identities=17% Similarity=0.174 Sum_probs=115.1
Q ss_pred eeecCcceEEEEcCC-CeEEEEEcCCCeeeeeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAADAMKLLGTSGD-GTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
+++|+++.+++++.+ +.+++|++...+...... .+...+++++|+|++.+|++|+.||.|++||+.........+.+
T Consensus 125 ~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~- 203 (287)
T d1pgua2 125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF- 203 (287)
T ss_dssp EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC-
T ss_pred eeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccc-
Confidence 467777888777765 579999998765554443 46778999999999999999999999999998754444455667
Q ss_pred cccceeEee-ec----------CCCEEEEecCCCcEEEEeccC-CeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 80 SPNSVDALL-KL----------DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 80 ~~~~v~~~~-~~----------~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
|...+.++. +| ++.++++|+.|+.|++||++. .+.+..+.+|.. +|++++|+|++. |++++.++.|
T Consensus 204 h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~-~V~~v~~~~~~~-l~s~g~D~~v 281 (287)
T d1pgua2 204 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-GVNNLLWETPST-LVSSGADACI 281 (287)
T ss_dssp CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT-CEEEEEEEETTE-EEEEETTSCE
T ss_pred cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC-CeEEEEECCCCE-EEEEECCCeE
Confidence 888888876 43 456899999999999999866 557777888988 699999999875 7788888776
Q ss_pred c
Q 031924 148 N 148 (150)
Q Consensus 148 ~ 148 (150)
.
T Consensus 282 ~ 282 (287)
T d1pgua2 282 K 282 (287)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=7.5e-23 Score=133.03 Aligned_cols=142 Identities=12% Similarity=0.158 Sum_probs=113.5
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc------------
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF------------ 69 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~------------ 69 (150)
++++++++|++|+.|++|++||+.+++.+..+.+|.+.|.+++|+|+ .+|++++.|+++++|+....
T Consensus 18 c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~ 96 (355)
T d1nexb2 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNST 96 (355)
T ss_dssp EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSC
T ss_pred EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccc
Confidence 46778999999999999999999999999999999999999999985 57899999999999987432
Q ss_pred --------------------------------------------------------------------------------
Q 031924 70 -------------------------------------------------------------------------------- 69 (150)
Q Consensus 70 -------------------------------------------------------------------------------- 69 (150)
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 176 (355)
T d1nexb2 97 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 176 (355)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEE
T ss_pred ccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeee
Confidence
Q ss_pred --------------cccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCC
Q 031924 70 --------------KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASV 134 (150)
Q Consensus 70 --------------~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 134 (150)
++......+ +...+.+.. +++++.+++++.|+.|++||.+++..+..+..|.. +|.++++++
T Consensus 177 ~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~~~- 253 (355)
T d1nexb2 177 GSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA-LVGLLRLSD- 253 (355)
T ss_dssp EETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSS-CCCEEEECS-
T ss_pred ecccceeeeeecccccceeeeec-cccccccccccccceeeecccccceEEeeeccccccccccccccc-ccccccccc-
Confidence 000000111 222233343 66788999999999999999999999999989988 699998864
Q ss_pred ccEEEecccccccc
Q 031924 135 LCFINSGFLSLNVN 148 (150)
Q Consensus 135 ~~~l~s~~~~~~v~ 148 (150)
++|++|+.++.|.
T Consensus 254 -~~l~~~~~dg~i~ 266 (355)
T d1nexb2 254 -KFLVSAAADGSIR 266 (355)
T ss_dssp -SEEEEECTTSEEE
T ss_pred -ceeeeeecccccc
Confidence 6899999988764
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.6e-22 Score=128.37 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=101.7
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc------------
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF------------ 69 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~------------ 69 (150)
++++++++|++|+.||+|++||+++++++..+.+|.+.|.+++| ++++|++|+.|+.+++|++...
T Consensus 20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~ 97 (293)
T d1p22a2 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA 97 (293)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC
T ss_pred EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccc
Confidence 57889999999999999999999999999999999999999876 6789999999999999997532
Q ss_pred ----------------------------------------------------------------------cccccccccc
Q 031924 70 ----------------------------------------------------------------------KDCSDRFVGL 79 (150)
Q Consensus 70 ----------------------------------------------------------------------~~~~~~~~~~ 79 (150)
.+....+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~- 176 (293)
T d1p22a2 98 VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG- 176 (293)
T ss_dssp EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC-
T ss_pred cccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEcc-
Confidence 000111111
Q ss_pred cccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
+...+..+ .+++..+++++.|+.|++||+++.+.+.....+.. .+. .+++++.+|++|+.++.|.
T Consensus 177 ~~~~v~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~--~~~~~~~~l~sg~~dg~i~ 241 (293)
T d1p22a2 177 HKRGIACL-QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVR--CIRFDNKRIVSGAYDGKIK 241 (293)
T ss_dssp CSSCEEEE-EEETTEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEE--EEECCSSEEEEEETTSCEE
T ss_pred cccccccc-cCCCCeEEEecCCCEEEEEecccceeeeeecccce-eee--eccccceEEEEEcCCCEEE
Confidence 12222221 23355777777888888888877777777666655 354 3556777888888777653
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=3.7e-23 Score=137.84 Aligned_cols=138 Identities=16% Similarity=0.138 Sum_probs=108.4
Q ss_pred cceEEEEcCCCeEEEEEcCCCe------------------eeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccc
Q 031924 7 AMKLLGTSGDGTLSVCNLRKNT------------------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~~~~~------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 68 (150)
+.++++++.|+.+++|++.... .......+...+.+++|+|++ +|++|+.|++|++||+..
T Consensus 136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~ 214 (393)
T d1sq9a_ 136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST 214 (393)
T ss_dssp CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc
Confidence 4688899999999999975321 011122344568899999987 889999999999999864
Q ss_pred ccccc------cccccccccceeEee-ecCCCEEEEecCCC---cEEEEeccCCeeeeecc-------------CCCCcc
Q 031924 69 FKDCS------DRFVGLSPNSVDALL-KLDEDRVITGSENG---LISLVGILPNRIIQPIA-------------EHSEYP 125 (150)
Q Consensus 69 ~~~~~------~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~-------------~~~~~~ 125 (150)
. +.. ..+.+ |..+|.++. +|++++|++|+.|+ .|++||+.+++.+..+. +|.. .
T Consensus 215 ~-~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~-~ 291 (393)
T d1sq9a_ 215 L-RPLYNFESQHSMIN-NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-W 291 (393)
T ss_dssp T-EEEEEEECCC---C-CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-C
T ss_pred c-cccccccccccccc-ccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccC-c
Confidence 3 332 34456 889999998 89999999999887 49999999887766653 6777 5
Q ss_pred eeEEEEcCCccEEEecccccccc
Q 031924 126 IESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 126 i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
|++++|+|++++|+||+.++.|.
T Consensus 292 V~~l~fspd~~~l~S~s~D~~v~ 314 (393)
T d1sq9a_ 292 VMSLSFNDSGETLCSAGWDGKLR 314 (393)
T ss_dssp EEEEEECSSSSEEEEEETTSEEE
T ss_pred eeeeccCCCCCeeEEECCCCEEE
Confidence 99999999999999999998875
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=8.5e-23 Score=133.10 Aligned_cols=146 Identities=13% Similarity=0.073 Sum_probs=119.8
Q ss_pred CeeecCcceEEEEc--CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCE-EEeecCCCeEEEEEccccc--ccccc
Q 031924 1 MTFAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFK--DCSDR 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~~~~~~~--~~~~~ 75 (150)
++|+++++++++++ .++.+.+|+.++++.+..+.+|...+.+++|+|++.. +++++.|+.+++||..... .....
T Consensus 121 v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~ 200 (325)
T d1pgua1 121 ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT 200 (325)
T ss_dssp EEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS
T ss_pred EEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceeccc
Confidence 46899999888765 4678999999999999999999999999999998765 6789999999999985332 12222
Q ss_pred cccccccceeEee-ecC-CCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEc---CCccEEEecccccccc
Q 031924 76 FVGLSPNSVDALL-KLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIA---SVLCFINSGFLSLNVN 148 (150)
Q Consensus 76 ~~~~~~~~v~~~~-~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~s~~~~~~v~ 148 (150)
... |...|.++. +|+ +.++++++.|+.|++||+++++.+..+..|.. ++..+.|+ |+|++|++++.++.|.
T Consensus 201 ~~~-~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~ 276 (325)
T d1pgua1 201 HHK-QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIR 276 (325)
T ss_dssp SSC-TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEE
T ss_pred ccC-CCCccEEeeeccccceeccccccccceeeeeecccccccccccccc-ccccceeeeeccCCCEEEEEeCCCeEE
Confidence 345 677788887 775 68899999999999999999999999988877 57666666 7899999999988764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=3.6e-23 Score=134.54 Aligned_cols=137 Identities=10% Similarity=0.193 Sum_probs=111.4
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
.|+|+++.+++++.|+.|++||.++++.+..+.+|...+.+++++ +++|++++.||.|++||++.. ...+.. |.
T Consensus 208 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~---~~~~~~-~~ 281 (355)
T d1nexb2 208 IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDY---SRKFSY-HH 281 (355)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTC---CEEEEE-EC
T ss_pred cccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccc---ceeccc-cc
Confidence 578899999999999999999999999999999999999999886 578999999999999998633 234445 55
Q ss_pred cceeEee--ecCCCEEEEecCCCcEEEEeccCCeeee-eccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 82 NSVDALL--KLDEDRVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 82 ~~v~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
..+.++. +++++++++| .|+.|++||+++++.+. .+..|.+ +|.+++|+|+ .++++++.++.+
T Consensus 282 ~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~-~V~~v~~~~~-~~~~~~s~dg~~ 347 (355)
T d1nexb2 282 TNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDAD-QIWSVNFKGK-TLVAAVEKDGQS 347 (355)
T ss_dssp TTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCS-EEEEEEEETT-EEEEEEESSSCE
T ss_pred CCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCC-CEEEEEEcCC-eEEEEEECCCcE
Confidence 5555543 5666666665 58999999999998875 4556777 6999999997 578888888764
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=1.1e-22 Score=132.53 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=112.9
Q ss_pred CeeecCcce-EEEEcCCCeEEEEEcCCCeeeeee---ccCCCcEEEEEEEeC-CCEEEeecCCCeEEEEEcccccccccc
Q 031924 1 MTFAADAMK-LLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (150)
Q Consensus 1 i~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~ 75 (150)
++|+|+++. +++++.|+.+++||.+..+..... ..+...+.+++|+|+ +.++++++.|+.|++||++ .++....
T Consensus 165 ~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~-~~~~~~~ 243 (325)
T d1pgua1 165 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK-SGEFLKY 243 (325)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT-TCCEEEE
T ss_pred ccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec-ccccccc
Confidence 468888775 667889999999999887765443 356678999999997 6889999999999999986 4566777
Q ss_pred ccccccccee----EeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCC-cceeEEEEcCC-ccEEEeccccccccC
Q 031924 76 FVGLSPNSVD----ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE-YPIESLGIASV-LCFINSGFLSLNVNP 149 (150)
Q Consensus 76 ~~~~~~~~v~----~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~i~~~~~~~~-~~~l~s~~~~~~v~~ 149 (150)
+.+ |...+. +...+++++|++++.|+.|++||++++++++.+..|.. ..+..+++.+. +.+|++|+.++.|+.
T Consensus 244 l~~-~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~v 322 (325)
T d1pgua1 244 IED-DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322 (325)
T ss_dssp CCB-TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEE
T ss_pred ccc-cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEE
Confidence 776 666654 33357899999999999999999999998887755443 12444455443 347889999988763
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=5.6e-22 Score=128.28 Aligned_cols=140 Identities=18% Similarity=0.192 Sum_probs=110.0
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccc------------
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF------------ 69 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~------------ 69 (150)
++++++++|++|+.|++|++||+++++++..+.+|...|.+++|+++ +|++++.|+.+++|+....
T Consensus 22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~ 99 (342)
T d2ovrb2 22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTST 99 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceeccccccee
Confidence 46788999999999999999999999999999999999999999864 8999999999999986432
Q ss_pred -------------------------------------------------------------------ccccccccccccc
Q 031924 70 -------------------------------------------------------------------KDCSDRFVGLSPN 82 (150)
Q Consensus 70 -------------------------------------------------------------------~~~~~~~~~~~~~ 82 (150)
......+.+ |..
T Consensus 100 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~ 178 (342)
T d2ovrb2 100 VRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG-HTN 178 (342)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECC-CSS
T ss_pred EeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcC-ccc
Confidence 000011111 211
Q ss_pred ceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 83 SVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 83 ~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+. ...+++..+++++.||.|++||++.++.+..+..|.. .+.++.++ ++++++|+.++.|.
T Consensus 179 ~~~-~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~s~s~d~~i~ 240 (342)
T d2ovrb2 179 RVY-SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-LTSGMELK--DNILVSGNADSTVK 240 (342)
T ss_dssp CEE-EEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCS-CEEEEEEE--TTEEEEEETTSCEE
T ss_pred ccc-cccCCCCEEEEEeCCCeEEEeecccceeeeEeccccc-ceeEEecC--CCEEEEEcCCCEEE
Confidence 111 1255778999999999999999999999999888877 58777665 46899999888764
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.89 E-value=3.7e-22 Score=130.47 Aligned_cols=135 Identities=13% Similarity=0.090 Sum_probs=113.1
Q ss_pred eeec-CcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC--CeEEEEEccccccccccccc
Q 031924 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 2 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~ 78 (150)
.||| ||+++++++ +|.|++||.+.++... + .|...+.+++|+|||++|++++.+ ..+++||.+ +....++..
T Consensus 9 ~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~--~~~~~~~~~ 83 (360)
T d1k32a3 9 DFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR--TGKAEKFEE 83 (360)
T ss_dssp EEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETT--TCCEEECCC
T ss_pred cccCCCCCEEEEEE-CCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECC--CCcEEEeeC
Confidence 5899 999999985 4699999998886654 3 688899999999999999876544 379999985 334455667
Q ss_pred ccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccc
Q 031924 79 LSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 143 (150)
|...+.++. +|++++|++++.++.+++|++.+++....+..|.. .+.+++|+|||++|+.+..
T Consensus 84 -~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~la~~~~ 147 (360)
T d1k32a3 84 -NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-MITDFTISDNSRFIAYGFP 147 (360)
T ss_dssp -CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCCEEECTTSCEEEEEEE
T ss_pred -CCceEEeeeecccccccceeccccccccccccccceeeeeecccc-cccchhhccceeeeeeecc
Confidence 888899887 99999999999999999999999888888877777 5999999999999986543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=5.9e-21 Score=121.84 Aligned_cols=107 Identities=14% Similarity=0.233 Sum_probs=91.9
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeee-eeccCCCcEEEEEEEeC----------CCEEEeecCCCeEEEEEcccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKN----------GRKVVCGSQSGTVLLYSWGYF 69 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~----------~~~l~~~~~d~~i~i~~~~~~ 69 (150)
|+|+|++++|++++.||.|++||+.+++... ....|...+.+++|+|. +.++++|+.|++|++||++..
T Consensus 168 ~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~ 247 (287)
T d1pgua2 168 ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 247 (287)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred EEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC
Confidence 4799999999999999999999999887654 45688899999999874 468999999999999998755
Q ss_pred cccccccccccccceeEee-ecCCCEEEEecCCCcEEEEec
Q 031924 70 KDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGI 109 (150)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~ 109 (150)
.+....+.+ |...|.++. .++ ..+++++.|+.|++|++
T Consensus 248 ~~~~~~~~~-h~~~V~~v~~~~~-~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 248 MKIIKALNA-HKDGVNNLLWETP-STLVSSGADACIKRWNV 286 (287)
T ss_dssp TCCEEETTS-STTCEEEEEEEET-TEEEEEETTSCEEEEEE
T ss_pred CeEEEEeCC-CCCCeEEEEECCC-CEEEEEECCCeEEEEEE
Confidence 566677778 999999988 555 46889999999999986
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.86 E-value=1.5e-20 Score=122.78 Aligned_cols=142 Identities=7% Similarity=-0.045 Sum_probs=113.3
Q ss_pred CeeecCcceEEEEcCC--CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++|+||++.|++++.+ ..|++||.++++.. .+..|...+.+++|+|++++|++++.++.+++|++. .++....+..
T Consensus 48 ~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~-~~~~~~~~~~ 125 (360)
T d1k32a3 48 VRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE-TGKPTVIERS 125 (360)
T ss_dssp EEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEEEC
T ss_pred EEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceecccccccccccc-ccceeeeeec
Confidence 4799999999877644 37999999987544 567888999999999999999999999999999985 3455556666
Q ss_pred ccccceeEee-ecCCCEEEEe----------cCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 79 LSPNSVDALL-KLDEDRVITG----------SENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~~~----------~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+...+.++. +++|++|+.+ ..++.+++|++.+++..... .+.. .+..++|+|||++|++++.++.+
T Consensus 126 -~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~-~~~~~~~spdg~~l~~~s~~~~~ 202 (360)
T d1k32a3 126 -REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENS-HDYAPAFDADSKNLYYLSYRSLD 202 (360)
T ss_dssp -SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSS-BEEEEEECTTSCEEEEEESCCCC
T ss_pred -ccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-cccc-ccccccccCCCCEEEEEeCCCce
Confidence 667777666 8999998854 34557999999888766555 4445 48889999999999998876554
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=5.5e-19 Score=111.81 Aligned_cols=136 Identities=21% Similarity=0.279 Sum_probs=110.2
Q ss_pred cCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccce
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v 84 (150)
+....+++++.|+.+++||.++++.+..+.++...+..+.++ +..+++++.|+++++||++. .+....+.+ +...+
T Consensus 146 ~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~-~~~~v 221 (293)
T d1p22a2 146 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC-GACLRVLEG-HEELV 221 (293)
T ss_dssp EETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT-CCEEEEECC-CSSCE
T ss_pred ecccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEeccc-ceeeeeecc-cceee
Confidence 345678888999999999999999988888888888877664 67899999999999999864 456666666 66666
Q ss_pred eEeeecCCCEEEEecCCCcEEEEeccC---------CeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 85 DALLKLDEDRVITGSENGLISLVGILP---------NRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 85 ~~~~~~~~~~l~~~~~dg~i~~~d~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
... .+++..|++++.||.|++||+.. ...++.+..|.+ +|.+++| ++++|++|+.++.|.
T Consensus 222 ~~~-~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~-~V~~v~~--d~~~l~s~s~Dg~i~ 290 (293)
T d1p22a2 222 RCI-RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG-RVFRLQF--DEFQIVSSSHDDTIL 290 (293)
T ss_dssp EEE-ECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS-CCCCEEE--CSSCEEECCSSSEEE
T ss_pred eec-cccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCC-CEEEEEE--cCCEEEEEecCCEEE
Confidence 543 66788999999999999999753 235677788888 6999998 467899999998775
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.77 E-value=5.4e-19 Score=118.79 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=51.7
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeee--ee---ccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEcc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT--RS---EFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWG 67 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~---~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~ 67 (150)
++|+|||+++++++.|+++++||+.+++... .+ ..|...+.+++|+|||++++++ ..++.+.+||..
T Consensus 67 vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~ 139 (426)
T d1hzua2 67 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE 139 (426)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred EEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCC
Confidence 5799999999999999999999999886432 22 2344456667778899987554 578899999864
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=3.1e-18 Score=115.47 Aligned_cols=145 Identities=12% Similarity=0.024 Sum_probs=100.3
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCee--eeeec---cCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSE---FSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSD 74 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~---~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~ 74 (150)
++|+|||+++++++.|+.+++||+.+++. ...+. .+.+.+.+..|+|||++| +++..++++++||... ++...
T Consensus 67 v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t-~~~~~ 145 (432)
T d1qksa2 67 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET-LEPKK 145 (432)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT-CCEEE
T ss_pred EEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcc-cccee
Confidence 47999999999999999999999988753 22222 344455666778899986 6777899999999863 34444
Q ss_pred cccc----------ccccceeEee-ecCCCEE-EEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 75 RFVG----------LSPNSVDALL-KLDEDRV-ITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 75 ~~~~----------~~~~~v~~~~-~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
.+.. .+......+. ++++..+ ++...++.|.+||..+.+.......+.+..+..++|+|+|+++++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~ 225 (432)
T d1qksa2 146 IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAA 225 (432)
T ss_dssp EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEE
T ss_pred eeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEec
Confidence 3332 0122233444 7777654 56677899999999876644433222222488999999999888777
Q ss_pred cccc
Q 031924 143 LSLN 146 (150)
Q Consensus 143 ~~~~ 146 (150)
...+
T Consensus 226 ~~~~ 229 (432)
T d1qksa2 226 NARN 229 (432)
T ss_dssp GGGT
T ss_pred cccc
Confidence 6543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.76 E-value=7.8e-18 Score=113.07 Aligned_cols=130 Identities=5% Similarity=-0.033 Sum_probs=94.3
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc-ccccc---ccccccce
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRF---VGLSPNSV 84 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~---~~~~~~~v 84 (150)
++++.+.||+|++||+.+++.+..+..+. .+..++|+|||+++++++.|+++++||+..... ...++ .+ |...+
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~-~~~~~ 111 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE-ARSVE 111 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE-EEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCC-CcceE
Confidence 55778899999999999999998888764 589999999999999999999999999864321 22222 23 44444
Q ss_pred eEee-ecCCCEEEEe-cCCCcEEEEeccCCeeeeeccCCCCc----------ceeEEEEcCCccEEEe
Q 031924 85 DALL-KLDEDRVITG-SENGLISLVGILPNRIIQPIAEHSEY----------PIESLGIASVLCFINS 140 (150)
Q Consensus 85 ~~~~-~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~l~s 140 (150)
.+.. +|+|++++++ ..++.+++||..+++....+..+... ....+.+++++..+..
T Consensus 112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~ 179 (426)
T d1hzua2 112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 179 (426)
T ss_dssp ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEE
Confidence 4444 7899987554 57899999999988877665443321 1345666666665553
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=2e-17 Score=106.32 Aligned_cols=119 Identities=7% Similarity=-0.008 Sum_probs=90.7
Q ss_pred eeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc--cccccccccccceeEee-ecC-CCEEEEecCCCc
Q 031924 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDRFVGLSPNSVDALL-KLD-EDRVITGSENGL 103 (150)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~v~~~~-~~~-~~~l~~~~~dg~ 103 (150)
+.+...++|++.|++++|+|++++|++|+.||+|++||++.... ......+ |..+|.++. +++ +.++++|+.|+.
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~-h~~~V~~v~f~~~~~~~l~sg~~d~~ 80 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecC-CCCCEEEEEEeCCCCCEEEEcccccc
Confidence 35566788999999999999999999999999999999864322 1222336 889999987 554 568999999999
Q ss_pred EEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 104 ISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 104 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
|++|+............+.........+.++...+++++.++.+
T Consensus 81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEE
T ss_pred eeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 99999987766555544444335556667788888888876654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.74 E-value=6.3e-17 Score=104.77 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=58.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeec-cCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGY 68 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~ 68 (150)
++|+++++++++++.+++|.+||+++++.+..+. .+...+.+++|+|||+++ +++..++.|.+||+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t 71 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT 71 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc
Confidence 4789999999999999999999999999888776 345567899999999987 5566889999999753
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=2.1e-17 Score=111.32 Aligned_cols=135 Identities=6% Similarity=-0.081 Sum_probs=99.1
Q ss_pred eEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc-cccccc---cccccce
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRFV---GLSPNSV 84 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~---~~~~~~v 84 (150)
++++.+.+|+|.+||.++++.+..+..+. .+..++|+|||+++++++.|+++++||+..... ...+++ . |...+
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~-~~~~~ 111 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIE 111 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCC-CCCeE
Confidence 45788999999999999999999888764 689999999999999999999999999864322 222222 3 33333
Q ss_pred eEee-ecCCCEE-EEecCCCcEEEEeccCCeeeeeccCCC----------CcceeEEEEcCCccEEE-eccccc
Q 031924 85 DALL-KLDEDRV-ITGSENGLISLVGILPNRIIQPIAEHS----------EYPIESLGIASVLCFIN-SGFLSL 145 (150)
Q Consensus 85 ~~~~-~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~l~-s~~~~~ 145 (150)
.+.. +++|+++ ++++.++.+++||..+++.+..+..+. ......+.++|+|..++ +...++
T Consensus 112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~ 185 (432)
T d1qksa2 112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 185 (432)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCC
Confidence 3333 6799876 677789999999999988777654322 11255678899887654 433333
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.72 E-value=2.9e-16 Score=101.23 Aligned_cols=134 Identities=12% Similarity=-0.012 Sum_probs=102.5
Q ss_pred ceEEEEcCCCeEEEEEcCCCeeeeeeccC--CCcEEEEEEEeCCCEE-EeecCCCeEEEEEcccccccccccccccccc-
Q 031924 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFS--EEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS- 83 (150)
Q Consensus 8 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~- 83 (150)
+++++++.|++|++||+++++.+..+..+ ...+..++|+|||+++ ++++.++.|.+||+.+ ++.+.++.. +...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t-~~~~~~~~~-~~~~~ 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDL-STPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEEC-CBTTE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCC-CcEEEEEec-CCCcc
Confidence 58999999999999999999988877643 3457899999999987 5677899999999864 455555543 2221
Q ss_pred ----eeEee-ecCCCEEEEec------------CCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 84 ----VDALL-KLDEDRVITGS------------ENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 84 ----v~~~~-~~~~~~l~~~~------------~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
+..+. +++++.++++. .+..+.+||..+++....+..+ . .+..++|+|||+++++++.+.
T Consensus 80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~ 156 (337)
T d1pbyb_ 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-R-QITMLAWARDGSKLYGLGRDL 156 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-S-SCCCEEECTTSSCEEEESSSE
T ss_pred cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-C-CceEEEEcCCCCEEEEEcCCc
Confidence 22334 78888887765 4578889999999888877544 4 388899999999998877543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.67 E-value=9.9e-15 Score=92.74 Aligned_cols=126 Identities=14% Similarity=0.181 Sum_probs=96.8
Q ss_pred EEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEcccccccccccccccccceeEee-
Q 031924 11 LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL- 88 (150)
Q Consensus 11 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~- 88 (150)
++.+.|++|.+||+++++.+..+... .....++|+|+|+++ +++..++.|++||+. .++.+.++.. +... ..+.
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~-t~~~~~~~~~-~~~~-~~~~~ 81 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA-TNNVIATVPA-GSSP-QGVAV 81 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT-TTEEEEEEEC-SSSE-EEEEE
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECC-CCceeeeeec-cccc-ccccc
Confidence 35678999999999999988877654 456899999999987 567788999999986 4466677766 5544 4444
Q ss_pred ecCCCEE-EEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 89 KLDEDRV-ITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 89 ~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
.+++..+ +++..++.+.+|+..+++....+..+ . ....+.|+|+++.++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~dg~~~~~~~ 134 (301)
T d1l0qa2 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-K-SPLGLALSPDGKKLYVTN 134 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-S-SEEEEEECTTSSEEEEEE
T ss_pred ccccccccccccccceeeecccccceeeeecccc-c-cceEEEeecCCCeeeeee
Confidence 7777754 55667789999999999888887555 3 378899999998775443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.65 E-value=9.5e-15 Score=94.03 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=43.5
Q ss_pred ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccccccc
Q 031924 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNVN 148 (150)
Q Consensus 89 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v~ 148 (150)
.+++..++.+ ++.+++||+.+++.+..+. +.. .+.+++|+|||++|++++.++.|.
T Consensus 249 ~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~-~~~~~~~s~dG~~l~v~~~~~~i~ 304 (337)
T d1pbyb_ 249 NPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPH-SYYSVNVSTDGSTVWLGGALGDLA 304 (337)
T ss_dssp CTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSS-CCCEEEECTTSCEEEEESBSSEEE
T ss_pred cccceEEEEc--cccEEEEECCCCcEEEEEc-CCC-CEEEEEECCCCCEEEEEeCCCcEE
Confidence 3444555443 5789999999999888874 445 488999999999999998887764
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.64 E-value=3.7e-14 Score=90.05 Aligned_cols=138 Identities=11% Similarity=0.147 Sum_probs=104.8
Q ss_pred CeeecCcceEE-EEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++|+||+++|+ +++.++.|++||+.+++.+..+..+. ....+.|++++..++ ++..++.+.+|+.. .++....+..
T Consensus 37 va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 114 (301)
T d1l0qa2 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTT-SNTVAGTVKT 114 (301)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEEC
T ss_pred EEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccc-cceeeeeccc
Confidence 47999999875 56689999999999999888877654 468999999988665 55677899999985 3455566554
Q ss_pred ccccceeEee-ecCCCEEE-EecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 79 LSPNSVDALL-KLDEDRVI-TGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
+.. ..++. .++++.++ ++..++.+.+|+..+.+....+..+ . .+..++++|++..+++++..
T Consensus 115 -~~~-~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 178 (301)
T d1l0qa2 115 -GKS-PLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R-SPKGIAVTPDGTKVYVANFD 178 (301)
T ss_dssp -SSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S-SEEEEEECTTSSEEEEEETT
T ss_pred -ccc-ceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-C-CceEEEeeccccceeeeccc
Confidence 443 34444 88887664 5566889999999998888777554 3 37889999999888776543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=1.9e-14 Score=92.74 Aligned_cols=135 Identities=15% Similarity=0.074 Sum_probs=92.4
Q ss_pred eEEEEcCCCeEEEEEcCCCeeee--eeccCCCcEEEEEEEeCCCEEEe-ecCCCeEEEEEccccccccccc--ccccccc
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDCSDRF--VGLSPNS 83 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~~~~~~~~~~~~~--~~~~~~~ 83 (150)
.+++++.|++|++|++.....+. ....+.+.+..++|+|||++|++ +..|+.|++|++...+...... .. +...
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~-~~~~ 84 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-LPGS 84 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-CSSC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc-cCCC
Confidence 44677799999999997653322 22356788999999999999855 4568999999986433221111 11 2233
Q ss_pred eeEee-ecCCCEEEEecC-CCcEEEEeccCCeeeee--ccCCCCcceeEEEEcCCccEEEeccccc
Q 031924 84 VDALL-KLDEDRVITGSE-NGLISLVGILPNRIIQP--IAEHSEYPIESLGIASVLCFINSGFLSL 145 (150)
Q Consensus 84 v~~~~-~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~~~ 145 (150)
+..+. +++|+++++++. ++.+.+|+......... ...+.. .+.++.++|++++++.++...
T Consensus 85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~v~~s~d~~~~~~~~~~~ 149 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQ 149 (333)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGG
T ss_pred ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCc-cceEEEeeecceeeecccccc
Confidence 44555 899998888775 67899998876553332 223444 488899999999888776543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.52 E-value=2.8e-13 Score=91.57 Aligned_cols=138 Identities=10% Similarity=-0.029 Sum_probs=101.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeec-----cCCCcEEEEEEEeCCCEEEeec---------CCCeEEEEEc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-----FSEEELTSVVLMKNGRKVVCGS---------QSGTVLLYSW 66 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~---------~d~~i~i~~~ 66 (150)
+.|.++++++.. .++.+.+||+.+++....+. .+...+.++.|+|||++|+.++ .++.+.+||+
T Consensus 22 ~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~ 99 (470)
T d2bgra1 22 LRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (470)
T ss_dssp CEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence 468888887754 57789999999987654333 3446789999999999998774 3567889998
Q ss_pred ccccccccccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCC-----------------cceeE
Q 031924 67 GYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE-----------------YPIES 128 (150)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-----------------~~i~~ 128 (150)
.. .....+.. ++..+.... +|+|+.++.. .++.+++|+..+++..+....+.. .....
T Consensus 100 ~~--~~~~~l~~-~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~ 175 (470)
T d2bgra1 100 NK--RQLITEER-IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (470)
T ss_dssp TT--TEECCSSC-CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred CC--Cccccccc-CCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence 63 33455666 777777666 9999999985 577899999988776554322111 02456
Q ss_pred EEEcCCccEEEecccc
Q 031924 129 LGIASVLCFINSGFLS 144 (150)
Q Consensus 129 ~~~~~~~~~l~s~~~~ 144 (150)
+.|||||++||....+
T Consensus 176 ~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 176 LWWSPNGTFLAYAQFN 191 (470)
T ss_dssp EEECTTSSEEEEEEEE
T ss_pred cEECCCCCccceeEec
Confidence 8899999999987654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.43 E-value=1.5e-11 Score=80.35 Aligned_cols=65 Identities=12% Similarity=-0.035 Sum_probs=50.7
Q ss_pred CeeecCcceEEEE-----cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec----------CCCeEEEEE
Q 031924 1 MTFAADAMKLLGT-----SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYS 65 (150)
Q Consensus 1 i~~~~~~~~l~~~-----~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~i~~ 65 (150)
++++||++.++.. +..+.+.+||.++++.+..+..+.. ..++|+|||+++++++ .++.+.+||
T Consensus 26 ~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D 103 (373)
T d2madh_ 26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred cccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccccccceEEEEEE
Confidence 3689999988765 2446799999999998887765543 3789999999998764 357789998
Q ss_pred cc
Q 031924 66 WG 67 (150)
Q Consensus 66 ~~ 67 (150)
..
T Consensus 104 ~~ 105 (373)
T d2madh_ 104 PV 105 (373)
T ss_pred CC
Confidence 75
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=1.3e-11 Score=79.18 Aligned_cols=139 Identities=11% Similarity=0.004 Sum_probs=90.6
Q ss_pred CeeecCcceEEEEc-CCCeEEEEEcCCCeeee---eeccCCCcEEEEEEEeCCCEEEeecC-CCeEEEEEccccc-cccc
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNTVQT---RSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFK-DCSD 74 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~-~~~~ 74 (150)
|+|+|||++|++++ .|+.|++|++....... ........+..++|+|||+++++++. ++.+.+|+..... ....
T Consensus 42 la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~ 121 (333)
T d1ri6a_ 42 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121 (333)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecc
Confidence 57999999886554 68999999998654221 11223445678999999999988875 6789999875322 1111
Q ss_pred ccccccccceeEee-ecCCCEEEEecC-CCcEEEEeccCCeeeee-----c-cCCCCcceeEEEEcCCccEEEec
Q 031924 75 RFVGLSPNSVDALL-KLDEDRVITGSE-NGLISLVGILPNRIIQP-----I-AEHSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 75 ~~~~~~~~~v~~~~-~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~-----~-~~~~~~~i~~~~~~~~~~~l~s~ 141 (150)
.... +...+.++. +++++.++.++. +..+.+|+......... . ..... ....++|++++.++...
T Consensus 122 ~~~~-~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-~p~~i~~~~~~~~~~~~ 194 (333)
T d1ri6a_ 122 DVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA-GPRHMVFHPNEQYAYCV 194 (333)
T ss_dssp EEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC-CEEEEEECTTSSEEEEE
T ss_pred cccC-CCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCC-CccEEEEeccceeEEee
Confidence 2223 444555555 888887777664 56799998865431111 1 12223 46789999998876644
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.33 E-value=3.4e-12 Score=82.16 Aligned_cols=100 Identities=8% Similarity=-0.058 Sum_probs=75.6
Q ss_pred EEEEeCCCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEE-EEecCCCcEEEEeccCCeeeeeccC
Q 031924 43 VVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRV-ITGSENGLISLVGILPNRIIQPIAE 120 (150)
Q Consensus 43 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~ 120 (150)
++|+++++++++++.+++|.+||+. .++.+.+++..+......+. +|+|+++ +++..++.|++||+.+++.+..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~-t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVA-SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETT-TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECC-CCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 4678999999999999999999996 45777766531444556666 8999876 5566789999999999987766533
Q ss_pred CCC-----cceeEEEEcCCccEEEeccc
Q 031924 121 HSE-----YPIESLGIASVLCFINSGFL 143 (150)
Q Consensus 121 ~~~-----~~i~~~~~~~~~~~l~s~~~ 143 (150)
... ..+..++|+|||++++.++.
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVN 108 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred cccccccCCceEEEEEecCCCEEEEEec
Confidence 221 13567999999998877654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.27 E-value=1.1e-10 Score=75.49 Aligned_cols=136 Identities=10% Similarity=-0.076 Sum_probs=92.9
Q ss_pred eeecCcceEEEEc-----CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec----------CCCeEEEEEc
Q 031924 2 TFAADAMKLLGTS-----GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSW 66 (150)
Q Consensus 2 ~~~~~~~~l~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~i~~~ 66 (150)
+.+||++.+++.. .++.+.+||..+++.+..+.....+ .++|+|||++|++.+ .++.|++||.
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~ 85 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 85 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence 4579999888753 4568999999999988877654433 689999999887643 4789999998
Q ss_pred cccccccccccccccc-------ceeEe-eecCCCEEEEec--CCCcEEEEeccCCeeeeeccCCCC------cceeEEE
Q 031924 67 GYFKDCSDRFVGLSPN-------SVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSE------YPIESLG 130 (150)
Q Consensus 67 ~~~~~~~~~~~~~~~~-------~v~~~-~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~------~~i~~~~ 130 (150)
.. ++....+.. +.. ....+ .+++++.++... .+..+.+|+..+++.+..+..+.. .+...+.
T Consensus 86 ~t-~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
T d2bbkh_ 86 VT-LLPTADIEL-PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM 163 (355)
T ss_dssp TT-CCEEEEEEE-TTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred CC-CCEEEEEec-CCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEE
Confidence 64 344444332 111 11123 378888776654 467899999999887776644322 1234577
Q ss_pred EcCCccEEEec
Q 031924 131 IASVLCFINSG 141 (150)
Q Consensus 131 ~~~~~~~l~s~ 141 (150)
+++|++.+...
T Consensus 164 ~~~dg~~~~v~ 174 (355)
T d2bbkh_ 164 HCRDGSLAKVA 174 (355)
T ss_dssp EETTSCEEEEE
T ss_pred EcCCCCEEEEE
Confidence 88888776643
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.18 E-value=9.8e-11 Score=75.76 Aligned_cols=130 Identities=9% Similarity=0.072 Sum_probs=89.0
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeee--eeccC----------CCcEEEEEEEeCCCEEEeecCC----------C
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQT--RSEFS----------EEELTSVVLMKNGRKVVCGSQS----------G 59 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~----------~~~v~~~~~~~~~~~l~~~~~d----------~ 59 (150)
.+.+++..++.++.++.+.+|++..++... ....+ ......+++++++..++....+ .
T Consensus 201 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 280 (355)
T d2bbkh_ 201 AYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR 280 (355)
T ss_dssp EEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred cccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCC
Confidence 456677788888899999999998875321 11111 1122357888998887765432 4
Q ss_pred eEEEEEcccccccccccccccccceeEee-ecCCC--EEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCc
Q 031924 60 TVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDED--RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVL 135 (150)
Q Consensus 60 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (150)
.+.+||... ++.+.++.. ...+.++. +|+|+ ++++++.|+.|++||+++++.++.+..+.. ....+.+.++|
T Consensus 281 ~v~v~d~~t-~~~~~~~~~--~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~-~p~~i~~~d~~ 355 (355)
T d2bbkh_ 281 FVVVLDAKT-GERLAKFEM--GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH-GPQVITTADMG 355 (355)
T ss_dssp EEEEEETTT-CCEEEEEEE--EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS-SCCEEECCCCC
T ss_pred eEEEEeCCC-CcEEEEecC--CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCC-CccEEEeCCCC
Confidence 789999863 455566553 34466666 88887 456778899999999999999998865544 35556555543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.05 E-value=6.2e-11 Score=79.24 Aligned_cols=135 Identities=11% Similarity=0.000 Sum_probs=89.8
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEccccccccc-------
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSD------- 74 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~------- 74 (150)
+.|+++++..+ .++.+.+++....+.+..+..... ...+.++|||++++ ++..++++.+||++...+...
T Consensus 225 ~~~dGk~~~v~-~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~ 302 (441)
T d1qnia2 225 AVKAGNFKTIG-DSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRD 302 (441)
T ss_dssp HHHTTCCBCCT-TCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGG
T ss_pred EecCCCEEEeC-CCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcce
Confidence 56788877654 566788887776666666665444 57899999999875 567899999999864322111
Q ss_pred ccccccc----cceeEeeecCCCEEEEecCCCcEEEEeccC----------Ceeeeec-----cCCCCcceeEEEEcCCc
Q 031924 75 RFVGLSP----NSVDALLKLDEDRVITGSENGLISLVGILP----------NRIIQPI-----AEHSEYPIESLGIASVL 135 (150)
Q Consensus 75 ~~~~~~~----~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~----------~~~~~~~-----~~~~~~~i~~~~~~~~~ 135 (150)
.+.+ +. .+...-..++|+.+.+...|..|..|++.. ...+..+ .+|.. .+.+..++|||
T Consensus 303 ~~~~-~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~-~~~~~t~~pdG 380 (441)
T d1qnia2 303 TIVA-EPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNH-ASLTESRDADG 380 (441)
T ss_dssp GEEE-CCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEE-ETTTTSTTCCC
T ss_pred EEEe-ecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCc-cccccccCCCC
Confidence 1111 11 111222356778888889999999999741 1233333 24444 36667899999
Q ss_pred cEEEec
Q 031924 136 CFINSG 141 (150)
Q Consensus 136 ~~l~s~ 141 (150)
++|+++
T Consensus 381 k~l~s~ 386 (441)
T d1qnia2 381 KWLVVL 386 (441)
T ss_dssp CEEEEE
T ss_pred cEEEec
Confidence 999998
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.02 E-value=2.4e-08 Score=64.84 Aligned_cols=122 Identities=10% Similarity=0.045 Sum_probs=80.8
Q ss_pred eEEEEcCCCeEEEEEcCCCeee--eeeccC----------CCcEEEEEEEeCCCEE----------EeecCCCeEEEEEc
Q 031924 9 KLLGTSGDGTLSVCNLRKNTVQ--TRSEFS----------EEELTSVVLMKNGRKV----------VCGSQSGTVLLYSW 66 (150)
Q Consensus 9 ~l~~~~~d~~i~i~d~~~~~~~--~~~~~~----------~~~v~~~~~~~~~~~l----------~~~~~d~~i~i~~~ 66 (150)
.++..+.++.+.+|+....... .....+ ......+++++++..+ +....++.+.+||.
T Consensus 226 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 305 (373)
T d2madh_ 226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEEC
Confidence 3445557889999998876432 111111 1223445666665544 34556678899998
Q ss_pred ccccccccccccccccceeEee-ecCCC--EEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCC
Q 031924 67 GYFKDCSDRFVGLSPNSVDALL-KLDED--RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASV 134 (150)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~~-~~~~~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 134 (150)
. .++....+. +...+..+. +++|+ ++++++.|+.|++||+.+++.++.+..+.. ..+.+++.++
T Consensus 306 ~-t~~~~~~~~--~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~-~P~~l~~~~~ 372 (373)
T d2madh_ 306 L-VGQTSSQIS--LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGS-GPQVLSVMNE 372 (373)
T ss_pred C-CCcEEEEec--CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCC-CCcEEEEecC
Confidence 5 345555554 345566666 88988 456788999999999999999999976655 4777776554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.02 E-value=1.1e-09 Score=71.49 Aligned_cols=137 Identities=5% Similarity=-0.141 Sum_probs=89.4
Q ss_pred CeeecCcceEEEEc----------CCCeEEEEEcCCCeeeeeeccCCC-------cEEEEEEEeCCCEEEeec-CCCeEE
Q 031924 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFSEE-------ELTSVVLMKNGRKVVCGS-QSGTVL 62 (150)
Q Consensus 1 i~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~d~~i~ 62 (150)
++|+||++.|+..+ .|+.|.+||..+++....+..+.. ....++|+|||++++++. .++.+.
T Consensus 70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~ 149 (368)
T d1mdah_ 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA 149 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEE
T ss_pred ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEE
Confidence 36899999888754 377899999999988766643322 234689999999998775 569999
Q ss_pred EEEcccccccccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeee------ccCCCCcceeEEEEcCCcc
Q 031924 63 LYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQP------IAEHSEYPIESLGIASVLC 136 (150)
Q Consensus 63 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~------~~~~~~~~i~~~~~~~~~~ 136 (150)
+||+.. ++....+.. +.... +.......++..+.||.+.+++......... ...+.. .+..+.+.+++.
T Consensus 150 ~~d~~~-~~~~~~~~~-~~~~~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~ 224 (368)
T d1mdah_ 150 GLSVPG-ASDDQLTKS-ASCFH--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC-SSQAAQANYPGM 224 (368)
T ss_dssp EEEETT-TEEEEEEEC-SSCCC--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB-CSCCEEETTTTE
T ss_pred EEECCC-CcEeEEeec-cCcce--EccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccccc-ceeecccccCcE
Confidence 999863 455555544 32221 1223345677778899988888764432111 112222 245667777777
Q ss_pred EEEecc
Q 031924 137 FINSGF 142 (150)
Q Consensus 137 ~l~s~~ 142 (150)
.+.+.+
T Consensus 225 ~~~~~~ 230 (368)
T d1mdah_ 225 LVWAVA 230 (368)
T ss_dssp EEECBS
T ss_pred EEEecC
Confidence 766544
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.93 E-value=5.9e-08 Score=64.80 Aligned_cols=142 Identities=12% Similarity=0.034 Sum_probs=86.3
Q ss_pred eecCcceEEEEc-CCCeEEEEEcCCCeeeeeec-cCCCcEEEEEEEeCCCE--EEeecCCC-----------------eE
Q 031924 3 FAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRK--VVCGSQSG-----------------TV 61 (150)
Q Consensus 3 ~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--l~~~~~d~-----------------~i 61 (150)
++|||+++++.. .++.|.++|+++++....+. ........++|+|+|+. +++.+.+. .+
T Consensus 79 gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~ 158 (441)
T d1qnia2 79 GRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMF 158 (441)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEE
T ss_pred ccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceE
Confidence 468999887764 78899999999998776554 34567899999999884 44444332 12
Q ss_pred EEEEcccccccccccccccccceeEeeecCCCEEEEecCC----------------------------------------
Q 031924 62 LLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSEN---------------------------------------- 101 (150)
Q Consensus 62 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d---------------------------------------- 101 (150)
..+|..+. +...++.. .......-.+++|+++++.+.+
T Consensus 159 ~~iD~~t~-~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~ 236 (441)
T d1qnia2 159 TAIDAETM-DVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGD 236 (441)
T ss_dssp EEEETTTC-SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EeecCccc-eeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCC
Confidence 33454321 22233322 2222222236677766655533
Q ss_pred -CcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEE-Eecccccccc
Q 031924 102 -GLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFI-NSGFLSLNVN 148 (150)
Q Consensus 102 -g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~~~~v~ 148 (150)
+.+.+++....+.+..++.... ...+.++|||+++ +++..+..|.
T Consensus 237 ~~v~vvd~~~~~~v~~~IPvgks--PhGv~vSPDGkyl~~~~~~~~tvs 283 (441)
T d1qnia2 237 SKVPVVDGRGESEFTRYIPVPKN--PHGLNTSPDGKYFIANGKLSPTVS 283 (441)
T ss_dssp CCCCEEECSSSCSSEEEECCBSS--CCCEEECTTSCEEEEECTTSSBEE
T ss_pred CCcEEEEcccCCceEEEEeCCCC--ccCceECCCCCEEEEeCCcCCcEE
Confidence 3344444444445555544322 5679999999976 5677776654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.93 E-value=1.6e-08 Score=65.96 Aligned_cols=135 Identities=8% Similarity=-0.177 Sum_probs=88.0
Q ss_pred eecCcce--EEE-EcC--CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec----------CCCeEEEEEcc
Q 031924 3 FAADAMK--LLG-TSG--DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWG 67 (150)
Q Consensus 3 ~~~~~~~--l~~-~~~--d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~i~~~~ 67 (150)
..++++. ++. ... +..+.++|..+++.+..+..+... .++|+|||+.+++.+ .|+.|++||..
T Consensus 27 ~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~ 104 (368)
T d1mdah_ 27 PGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV 104 (368)
T ss_dssp CCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred cCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECC
Confidence 3456664 332 233 445777899999888777665544 588999999888654 46789999985
Q ss_pred cccccccccccccccc-------eeEe-eecCCCEEEEec-CCCcEEEEeccCCeeeeeccCCCCc------ceeEEEEc
Q 031924 68 YFKDCSDRFVGLSPNS-------VDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEY------PIESLGIA 132 (150)
Q Consensus 68 ~~~~~~~~~~~~~~~~-------v~~~-~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~------~i~~~~~~ 132 (150)
. .+....+.. +... ...+ .+++|++++++. .++.+.+||+.+++....+..+... ....+.++
T Consensus 105 t-~~~~~~i~~-p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 182 (368)
T d1mdah_ 105 T-FLPIADIEL-PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGS 182 (368)
T ss_dssp T-CCEEEEEEE-TTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCC
T ss_pred C-CcEeeeecC-CccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEc
Confidence 3 355444432 2111 1123 389999887765 5789999999999887776543321 13446677
Q ss_pred CCccEEEec
Q 031924 133 SVLCFINSG 141 (150)
Q Consensus 133 ~~~~~l~s~ 141 (150)
+||+.+...
T Consensus 183 ~Dg~~~~~~ 191 (368)
T d1mdah_ 183 CPASLAASD 191 (368)
T ss_dssp CTTSCEEEE
T ss_pred CCCCEEEEE
Confidence 787765543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.83 E-value=1e-08 Score=68.96 Aligned_cols=98 Identities=11% Similarity=-0.004 Sum_probs=69.0
Q ss_pred eeecCcceEEEEcC---------CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccc
Q 031924 2 TFAADAMKLLGTSG---------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (150)
Q Consensus 2 ~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 72 (150)
.||||+++|+.++. ++.+.+||+++++ ...+..+.+.+..+.|+|||+.++.. .++.+.+|+... ++.
T Consensus 68 ~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~-g~~ 144 (470)
T d2bgra1 68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPN-LPS 144 (470)
T ss_dssp EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTT-SCC
T ss_pred EECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCC-Cce
Confidence 58999999998743 5678899999886 44567788889999999999999886 567899998753 232
Q ss_pred ccccccccc-----------------cceeEee-ecCCCEEEEecCCC
Q 031924 73 SDRFVGLSP-----------------NSVDALL-KLDEDRVITGSENG 102 (150)
Q Consensus 73 ~~~~~~~~~-----------------~~v~~~~-~~~~~~l~~~~~dg 102 (150)
.+....... .....+. +|+|+.|+....|.
T Consensus 145 ~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~ 192 (470)
T d2bgra1 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND 192 (470)
T ss_dssp EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred eeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence 222111011 1122344 89999998876543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.80 E-value=3.1e-07 Score=57.16 Aligned_cols=143 Identities=7% Similarity=-0.053 Sum_probs=88.4
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 81 (150)
+++++++++++-..+..+..++..................++++.++++.+++...++.+..++........... . ..
T Consensus 104 avd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~-~-~~ 181 (260)
T d1rwia_ 104 AVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF-T-DI 181 (260)
T ss_dssp EECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC-S-SC
T ss_pred cccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeec-c-cc
Confidence 456677766665566666666655433222111223355789999999988888888899999875332222111 2 23
Q ss_pred cceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 82 NSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 82 ~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
.....++ .++|+++++....+.|..++..... ...+....-.....|+++++|.++++-..+..|
T Consensus 182 ~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI 247 (260)
T d1rwia_ 182 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 247 (260)
T ss_dssp CSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEE
Confidence 3344555 6788888888888888888765432 222222111137789999999988775544443
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.79 E-value=4.3e-07 Score=56.50 Aligned_cols=143 Identities=9% Similarity=0.037 Sum_probs=91.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 80 (150)
|+++++++++++....+.+++++........... ......++++.++++.+++-..+..+..++............+
T Consensus 62 vav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-- 138 (260)
T d1rwia_ 62 LAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-- 138 (260)
T ss_dssp EEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCS--
T ss_pred EEEcCCCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeeecc--
Confidence 4677888877777667677666655444333222 2345789999999988777766777777775422111111122
Q ss_pred ccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEeccccccc
Q 031924 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
......+. .++++++++...++.|..++............... ....++++++|+++++......|
T Consensus 139 ~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~-~p~gi~~d~~g~l~vsd~~~~~i 205 (260)
T d1rwia_ 139 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT-APWGIAVDEAGTVYVTEHNTNQV 205 (260)
T ss_dssp CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC-SEEEEEECTTCCEEEEETTTTEE
T ss_pred cCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccC-CCccceeeeeeeeeeeecCCCEE
Confidence 22234555 67888888888889999999865443332223334 36789999999988877655543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.73 E-value=2.2e-06 Score=55.88 Aligned_cols=146 Identities=10% Similarity=0.038 Sum_probs=85.3
Q ss_pred CeeecCcceEEEEc-CCCeEEEEEcCCC-eee--eee--ccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEccccccc-
Q 031924 1 MTFAADAMKLLGTS-GDGTLSVCNLRKN-TVQ--TRS--EFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDC- 72 (150)
Q Consensus 1 i~~~~~~~~l~~~~-~d~~i~i~d~~~~-~~~--~~~--~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~- 72 (150)
+.|+||++++++++ ....|.+|+.... +.. ... .........+.|+|+++++++. -.+++|.+|+.......
T Consensus 150 v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~ 229 (365)
T d1jofa_ 150 MVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP 229 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceE
Confidence 46899999888875 4668999886543 221 111 1233567899999999988554 46789999998532111
Q ss_pred c---cccc--------------cccccceeEee-ecCCCEEEEecC------CCcEEEEeccCCeeee------eccCCC
Q 031924 73 S---DRFV--------------GLSPNSVDALL-KLDEDRVITGSE------NGLISLVGILPNRIIQ------PIAEHS 122 (150)
Q Consensus 73 ~---~~~~--------------~~~~~~v~~~~-~~~~~~l~~~~~------dg~i~~~d~~~~~~~~------~~~~~~ 122 (150)
. .... . +......+. +|+|++++++.. .+.|..|++.....+. ......
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G 308 (365)
T d1jofa_ 230 VYTHHSFPLIPPGIPDRDPETGK-GLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG 308 (365)
T ss_dssp EEEEEEEESSCTTCCCBCTTTSS-BSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC
T ss_pred EEEeeeecccccccccccccccc-ccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCC
Confidence 1 1000 0 111223344 899998877642 2237777665422111 111122
Q ss_pred CcceeEEEEcC-CccEEEecc-cccccc
Q 031924 123 EYPIESLGIAS-VLCFINSGF-LSLNVN 148 (150)
Q Consensus 123 ~~~i~~~~~~~-~~~~l~s~~-~~~~v~ 148 (150)
. ....++++| +|++|+.+. .++.|.
T Consensus 309 ~-~p~~i~~~p~~G~~l~va~~~s~~v~ 335 (365)
T d1jofa_ 309 G-HSNAVSPCPWSDEWMAITDDQEGWLE 335 (365)
T ss_dssp T-TCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred C-CccEEEecCCCCCEEEEEeCCCCeEE
Confidence 2 356789998 889776554 455443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.70 E-value=2.3e-06 Score=53.67 Aligned_cols=140 Identities=8% Similarity=0.053 Sum_probs=92.7
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeee--ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc--
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS--EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-- 77 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-- 77 (150)
++.++++++++....+.+.+++.. ++.+..+ ..+......+++.++++.+++....+.|++||.. ++...++.
T Consensus 120 avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~--G~~~~~~g~~ 196 (279)
T d1q7fa_ 120 TVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQIGGE 196 (279)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEEESCT
T ss_pred ccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecC--Cceeeeeccc
Confidence 455667777776667777777754 4444443 3345577889999999988888888999999964 45444442
Q ss_pred cccccceeEee-ecCCCEEEEecC-CCcEEEEeccCCeeeeeccCCCC-cceeEEEEcCCccEEEeccccccc
Q 031924 78 GLSPNSVDALL-KLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSE-YPIESLGIASVLCFINSGFLSLNV 147 (150)
Q Consensus 78 ~~~~~~v~~~~-~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~~~~v 147 (150)
+ .......++ .++|+++++-.. ++.|.+++. +++.+..+..... .....+++.|+|.++++. .+..|
T Consensus 197 g-~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~-~n~~v 266 (279)
T d1q7fa_ 197 G-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLAS-KDYRL 266 (279)
T ss_dssp T-TSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEE-TTTEE
T ss_pred c-cccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEe-CCCeE
Confidence 2 233345565 788888877554 457999985 5776666532221 137789999999877754 34433
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.7e-07 Score=63.28 Aligned_cols=139 Identities=11% Similarity=-0.025 Sum_probs=86.5
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCCCeeeeeecc---CCCcEEEEEEEeCCCEEEeec---------CCCeEEEEEcccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMKNGRKVVCGS---------QSGTVLLYSWGYF 69 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~---------~d~~i~i~~~~~~ 69 (150)
.|.+++.++.. ..+|.|.+||+.+++....+.. ....+....|+||+++++... ..+.+.+||+...
T Consensus 23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 47777776544 4678899999988764332222 223567788999999987653 3578889998532
Q ss_pred c-ccccccccccccceeEe-eecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCc-----------------ceeEEE
Q 031924 70 K-DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-----------------PIESLG 130 (150)
Q Consensus 70 ~-~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-----------------~i~~~~ 130 (150)
. ..+..... ....+... .+|+|+.++... ++.+++.+...+...+........ .-..+.
T Consensus 102 ~~~~l~~~~~-~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~ 179 (465)
T d1xfda1 102 DPQSLDPPEV-SNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW 179 (465)
T ss_dssp CCEECCCTTC-CSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred ceeeccCccC-CccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence 1 11211222 22233323 389999988765 667888887666554443211110 124678
Q ss_pred EcCCccEEEeccc
Q 031924 131 IASVLCFINSGFL 143 (150)
Q Consensus 131 ~~~~~~~l~s~~~ 143 (150)
|||||++||....
T Consensus 180 WSPDgk~iaf~~~ 192 (465)
T d1xfda1 180 WSPDGTRLAYAAI 192 (465)
T ss_dssp ECTTSSEEEEEEE
T ss_pred ECCCCCeEEEEEe
Confidence 9999999997653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.67 E-value=2.8e-06 Score=54.28 Aligned_cols=108 Identities=10% Similarity=0.023 Sum_probs=71.1
Q ss_pred cEEEEEEEeCCC-----EEEeecCCCeEEEEEcccccccc-----cccccccccceeEee-ecCCCEEEEecCCCcEEEE
Q 031924 39 ELTSVVLMKNGR-----KVVCGSQSGTVLLYSWGYFKDCS-----DRFVGLSPNSVDALL-KLDEDRVITGSENGLISLV 107 (150)
Q Consensus 39 ~v~~~~~~~~~~-----~l~~~~~d~~i~i~~~~~~~~~~-----~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~ 107 (150)
..+.++|++++. ..++-+..+.|..|++...+... ..+.+........++ ..+|++.++....+.|++|
T Consensus 173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~ 252 (314)
T d1pjxa_ 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence 457899999864 44555778899999875433221 122220112233455 6788988888888999999
Q ss_pred eccCCeeeeeccCCCCcceeEEEEcCCcc-EEEeccccccc
Q 031924 108 GILPNRIIQPIAEHSEYPIESLGIASVLC-FINSGFLSLNV 147 (150)
Q Consensus 108 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~~~~v 147 (150)
|.+.++....+..... ..++++|.||++ ++++.+.++.|
T Consensus 253 dp~~g~~~~~i~~p~~-~~t~~afg~d~~~lyVt~~~~g~i 292 (314)
T d1pjxa_ 253 GPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAV 292 (314)
T ss_dssp CTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEE
T ss_pred eCCCCEEEEEEECCCC-CEEEEEEeCCCCEEEEEECCCCcE
Confidence 9987776665544434 488999999986 55666555544
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.60 E-value=1e-06 Score=55.89 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=77.0
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc-c
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-L 79 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-~ 79 (150)
++++|||+++++...+++|..|+.... .. .+......+.+++|+++|+.+++...++.+..++..........+.. .
T Consensus 33 iAv~pdG~l~vt~~~~~~I~~i~p~g~-~~-~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (302)
T d2p4oa1 33 LASAPDGTIFVTNHEVGEIVSITPDGN-QQ-IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP 110 (302)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCC-EE-EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred EEECCCCCEEEEeCCCCEEEEEeCCCC-EE-EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccC
Confidence 478999999999989999999986543 22 33445578899999999999898888888888876432222222211 0
Q ss_pred cccceeEee-ecCCCEEEEecCCCcEEEEeccCC
Q 031924 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILPN 112 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~ 112 (150)
.......+. .++++++++.+.++.+..++...+
T Consensus 111 ~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~ 144 (302)
T d2p4oa1 111 DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 144 (302)
T ss_dssp TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred CccccceeEEccCCCEEeeccccccceeeeccCC
Confidence 223345555 678888888888888888876654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.55 E-value=8.9e-06 Score=51.97 Aligned_cols=144 Identities=12% Similarity=0.110 Sum_probs=81.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCC--CeEEEEEccccccccccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~ 78 (150)
++|++++++.++-...+.|..|+.+.++..............++++++|+.+++...+ ....++.+............
T Consensus 45 ~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~ 124 (319)
T d2dg1a1 45 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE 124 (319)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred CEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeecc
Confidence 3688899877777788899999988776555554555678899999999988775432 23333333222222222211
Q ss_pred --ccccceeEee-ecCCCEEEEecCC------CcEEEEeccCCeeeeeccCCCCcceeEEEEcCCccEE-Eecccccc
Q 031924 79 --LSPNSVDALL-KLDEDRVITGSEN------GLISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFI-NSGFLSLN 146 (150)
Q Consensus 79 --~~~~~v~~~~-~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~~~~ 146 (150)
........+. .++|++.++.... +.+..++...+. +..+...-. ..+.++|+|+++.| ++-+....
T Consensus 125 ~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~-~pnGia~s~dg~~lyvad~~~~~ 200 (319)
T d2dg1a1 125 DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNIS-VANGIALSTDEKVLWVTETTANR 200 (319)
T ss_dssp SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEES-SEEEEEECTTSSEEEEEEGGGTE
T ss_pred CCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccc-eeeeeeeccccceEEEecccCCc
Confidence 0122234444 7788876664321 235555543322 222212222 26779999999754 44344433
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.44 E-value=1.2e-05 Score=50.79 Aligned_cols=145 Identities=10% Similarity=0.030 Sum_probs=88.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCe--eeeee-ccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccc--
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR-- 75 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-- 75 (150)
++|+|+++++++...++.+..++..... ..... .......+.+.+.++++.+++-+.++.+..++..........
T Consensus 73 la~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~ 152 (302)
T d2p4oa1 73 LAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH 152 (302)
T ss_dssp EEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecC
Confidence 4789999988888888888888765432 22111 233456889999999998888888888888876432111100
Q ss_pred -------cccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeec--cCCCCcceeEEEEcCCccEEEecccccc
Q 031924 76 -------FVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPI--AEHSEYPIESLGIASVLCFINSGFLSLN 146 (150)
Q Consensus 76 -------~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~~~~ 146 (150)
... .......+....+.++++.+..+.|+.++.......... ..... ....++++++|++.++....+.
T Consensus 153 ~~~~~~~~~~-~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~pdgia~d~dG~l~va~~~~~~ 230 (302)
T d2p4oa1 153 PMLARSNSES-VFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT-NIDDFAFDVEGNLYGATHIYNS 230 (302)
T ss_dssp GGGSCSSTTC-CSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESC-CCSSEEEBTTCCEEEECBTTCC
T ss_pred CccceeeccC-cccccccccccCCceeeecCCCCeEEeccccccccccccccccCCC-CCcceEECCCCCEEEEEcCCCc
Confidence 001 111223333334456667778889988887654322111 01122 2567899999988777655544
Q ss_pred c
Q 031924 147 V 147 (150)
Q Consensus 147 v 147 (150)
|
T Consensus 231 V 231 (302)
T d2p4oa1 231 V 231 (302)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.44 E-value=3e-05 Score=47.68 Aligned_cols=140 Identities=14% Similarity=0.108 Sum_probs=78.0
Q ss_pred eeecCcceEEEEcCC---CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecC-CCeEEEEEcccccccccccc
Q 031924 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~ 77 (150)
+|||||+.|+..... ..+.+.+...+... .+..+.+......|+|+|+.++.... ++...++.............
T Consensus 45 ~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (269)
T d2hqsa1 45 AWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT 123 (269)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC
T ss_pred EECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeee
Confidence 599999999876433 34667777666443 44455677788999999998876543 33333333221111111111
Q ss_pred cccccceeEeeecCCC-EEEEecCCCc--EEEEeccCCeeeeeccCCCCcceeEEEEcCCccEEEecccc
Q 031924 78 GLSPNSVDALLKLDED-RVITGSENGL--ISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 78 ~~~~~~v~~~~~~~~~-~l~~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
.............++. .+++...++. +...++..+.... +..... ......|+|+++.++..+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~-~~~~~~~spdg~~~~~~~~~ 191 (269)
T d2hqsa1 124 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGS-QNQDADVSSDGKFMVMVSSN 191 (269)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSS-EEEEEEECTTSSEEEEEEEC
T ss_pred eccccccccccccccccceecccccCCceEeeeeccccccee-eecccc-cccccccccccceeEEEeec
Confidence 1022222223344444 4444445554 4455655544332 323334 47778999999988876543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.42 E-value=2.2e-05 Score=51.06 Aligned_cols=102 Identities=4% Similarity=-0.088 Sum_probs=63.5
Q ss_pred cEEEEEEEeCCCEEEeecC-CCeEEEEEcccccccc--cccc--cccccceeEee-ecCCCEEEEe-cCCCcEEEEeccC
Q 031924 39 ELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCS--DRFV--GLSPNSVDALL-KLDEDRVITG-SENGLISLVGILP 111 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~--~~~~--~~~~~~v~~~~-~~~~~~l~~~-~~dg~i~~~d~~~ 111 (150)
.+.++.|+|+|+++++.+. ...|.+|+....+... .... . .......+. +++++++... ..+++|.+|+...
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~-~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecC-CCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence 5789999999998887764 4588888765433221 1111 1 123344454 8899877554 4578999999865
Q ss_pred Cee--eee---cc--------------CCCCcceeEEEEcCCccEEEecc
Q 031924 112 NRI--IQP---IA--------------EHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 112 ~~~--~~~---~~--------------~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
++. ... .. .+.. ....+.++|||++|.++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~spdG~~lyvsn 273 (365)
T d1jofa_ 225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLY-RADVCALTFSGKYMFASS 273 (365)
T ss_dssp TTCCEEEEEEEEESSCTTCCCBCTTTSSBSE-EEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEeeeeccccccccccccccccccC-CccceEECCCCCEEEEEc
Confidence 432 111 10 0111 255789999999987754
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.22 E-value=0.0001 Score=46.93 Aligned_cols=138 Identities=9% Similarity=-0.067 Sum_probs=81.2
Q ss_pred eeecCcceEEEEcC------CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEccccccccc
Q 031924 2 TFAADAMKLLGTSG------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSD 74 (150)
Q Consensus 2 ~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~ 74 (150)
+++++|++.++... .+.+..++...+. +..+...-...+.++|+|+++.| ++-+..+.|..|++...+....
T Consensus 136 ~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~ 214 (319)
T d2dg1a1 136 VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQ 214 (319)
T ss_dssp EECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEE
T ss_pred eEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceec
Confidence 45667765555322 1234444443332 22222223346789999999876 4556778999998754332221
Q ss_pred ccc-------cccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCC-----CcceeEEEEcCCccEEEec
Q 031924 75 RFV-------GLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-----EYPIESLGIASVLCFINSG 141 (150)
Q Consensus 75 ~~~-------~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~s~ 141 (150)
... . .......++ ..+|++.++....+.|.++|. .++.+..+.... ...+++++|.+++..+...
T Consensus 215 ~~~~~~~~~~~-~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t 292 (319)
T d2dg1a1 215 PFGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIIC 292 (319)
T ss_dssp EEEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred cccceeeeccC-CccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEE
Confidence 110 1 111233455 678998888888999999997 577766663211 1137789999887665544
Q ss_pred c
Q 031924 142 F 142 (150)
Q Consensus 142 ~ 142 (150)
.
T Consensus 293 ~ 293 (319)
T d2dg1a1 293 S 293 (319)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=2.3e-05 Score=52.68 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=45.7
Q ss_pred eeecCcceEEEEc---------CCCeEEEEEcCCCeeeee--eccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcc
Q 031924 2 TFAADAMKLLGTS---------GDGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (150)
Q Consensus 2 ~~~~~~~~l~~~~---------~d~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~ 67 (150)
.||||+++++... ..+.+.++|+.+++.... .......+....|||||+.++-.. ++.+.+.+..
T Consensus 67 ~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~ 142 (465)
T d1xfda1 67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHV 142 (465)
T ss_dssp EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSS
T ss_pred EECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecC
Confidence 4799999887763 357889999998764332 222334566789999999987663 5677777654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.17 E-value=0.00017 Score=44.91 Aligned_cols=122 Identities=10% Similarity=0.110 Sum_probs=79.8
Q ss_pred CCCeEEEEEcCCCeeeeeec-cCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc-ccccceeEee-ecC
Q 031924 15 GDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNSVDALL-KLD 91 (150)
Q Consensus 15 ~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~-~~~ 91 (150)
.++.|..++.. ++....+. ........+++.++|..+++....+.+.+++.. ++.+.++.. .+......+. .++
T Consensus 91 ~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~--g~~~~~~g~~~~~~~~~~i~~d~~ 167 (279)
T d1q7fa_ 91 PTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDK 167 (279)
T ss_dssp GGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSS
T ss_pred Ccccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC--Cceeecccccccccccceeeeccc
Confidence 44566666643 44443332 234567889999999988888888888888753 444444421 0333444555 677
Q ss_pred CCEEEEecCCCcEEEEeccCCeeeeeccC--CCCcceeEEEEcCCccEEEec
Q 031924 92 EDRVITGSENGLISLVGILPNRIIQPIAE--HSEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 92 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~ 141 (150)
++++++....+.|++||. +++.+..+.. ... ....++++++|+++++-
T Consensus 168 g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~-~P~giavD~~G~i~Vad 217 (279)
T d1q7fa_ 168 QEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITN-YPIGVGINSNGEILIAD 217 (279)
T ss_dssp SEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSC-SEEEEEECTTCCEEEEE
T ss_pred eeEEeeeccccceeeeec-CCceeeeeccccccc-CCcccccccCCeEEEEE
Confidence 888888888899999997 4555555532 223 37789999999877764
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=0.00019 Score=43.91 Aligned_cols=136 Identities=14% Similarity=0.136 Sum_probs=69.8
Q ss_pred eeecCcceEEEEc-CCCeEEEEE--cCCCeeeeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEcccccccccccc
Q 031924 2 TFAADAMKLLGTS-GDGTLSVCN--LRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~~-~d~~i~i~d--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
.|+|+++.++... .++...++. ....... .............+++++..+ ++...++...+|.............
T Consensus 89 ~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~ 167 (269)
T d2hqsa1 89 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT 167 (269)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC
T ss_pred eecCCCCeeeEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeecccccceeee
Confidence 5788888877654 233333332 2222222 222233344455667766554 4444555544444322222223333
Q ss_pred cccccceeE-eeecCCCEEEEecCC-CcEEEE--eccCCeeeeeccCCCCcceeEEEEcCCccEEEecc
Q 031924 78 GLSPNSVDA-LLKLDEDRVITGSEN-GLISLV--GILPNRIIQPIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 78 ~~~~~~v~~-~~~~~~~~l~~~~~d-g~i~~~--d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
. ....... ..+++++.++..+.+ +...+| +...+.. +.. .+.. ......|+|||+.|+-.+
T Consensus 168 ~-~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~-~~~~-~~~~p~~SPDG~~i~f~s 232 (269)
T d2hqsa1 168 W-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVL-SSTF-LDETPSLAPNGTMVIYSS 232 (269)
T ss_dssp C-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EEC-CCSS-SCEEEEECTTSSEEEEEE
T ss_pred c-ccccccccccccccceeEEEeecCCceeeeEeecccccc-eEe-ecCc-cccceEECCCCCEEEEEE
Confidence 3 3333333 338888887776654 444444 5444433 333 3334 367789999999887544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.95 E-value=4.3e-05 Score=48.65 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=55.5
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEcccccc
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~ 71 (150)
|+++.+|++.++....+.|.+||.+.++....+.......++++|.|+++.| ++.+.++.|..+++...++
T Consensus 231 iavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~ 302 (314)
T d1pjxa_ 231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGK 302 (314)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBC
T ss_pred eEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCCh
Confidence 4567888888887788999999998887666666555678999999998754 6667789999888865553
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.84 E-value=0.00078 Score=41.19 Aligned_cols=52 Identities=12% Similarity=0.179 Sum_probs=40.7
Q ss_pred eeecC--cceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee
Q 031924 2 TFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG 55 (150)
Q Consensus 2 ~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 55 (150)
..+|| |+.++-.+ ++.|.+.|+..++.. .+..+.+.....+|||||++|+-.
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~ 58 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIR 58 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEE
Confidence 46899 99988774 457888899988654 556667788899999999998744
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.77 E-value=0.0012 Score=41.34 Aligned_cols=135 Identities=10% Similarity=0.084 Sum_probs=82.7
Q ss_pred eeecCcceEEEEcC----CCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEE-EeecCCCeEEEEEccccccc----
Q 031924 2 TFAADAMKLLGTSG----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDC---- 72 (150)
Q Consensus 2 ~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~---- 72 (150)
.+.|+|++.++... .+.-.+|.+..++...... .....+.++|+++++.+ ++-+..+.|..|++......
T Consensus 109 ~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~ 187 (295)
T d2ghsa1 109 RMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK 187 (295)
T ss_dssp EECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred EECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccc
Confidence 35567766655432 2334556666665443332 23456889999998866 45567789999987422111
Q ss_pred cc---ccccccccceeEee-ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEc-CCcc-EEEe
Q 031924 73 SD---RFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIA-SVLC-FINS 140 (150)
Q Consensus 73 ~~---~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~l~s 140 (150)
.. .+.+ .......++ ..+|++.++....+.|..||. .++.+..+..... .+++++|- +|.+ +++|
T Consensus 188 ~~~~~~~~~-~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~-~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 188 AEVFIDSTG-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp CEEEEECTT-SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEE
T ss_pred eEEEeccCc-ccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCC-ceEEEEEeCCCCCEEEEE
Confidence 11 1122 233345555 778888888777889999996 5777777755444 48999996 5654 4444
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.50 E-value=0.0015 Score=43.15 Aligned_cols=101 Identities=10% Similarity=0.011 Sum_probs=59.5
Q ss_pred EEEEEEEeCCCEEEee-cCCCeEEEEEccccccccc-------cccc---ccccceeEeeecCCCEEEEecCCCcEEEEe
Q 031924 40 LTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSD-------RFVG---LSPNSVDALLKLDEDRVITGSENGLISLVG 108 (150)
Q Consensus 40 v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~-------~~~~---~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d 108 (150)
...+..+|||++++++ ..+.++.++|++....... .+.+ ..-.+.......+|+-..+---|..|.-|+
T Consensus 277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~ 356 (459)
T d1fwxa2 277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWN 356 (459)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEe
Confidence 4678999999998654 5789999999963322110 0000 012233333344565666667899999999
Q ss_pred ccCC----------eeeeeccCCCCcceeEE------EEcCCccEEEecc
Q 031924 109 ILPN----------RIIQPIAEHSEYPIESL------GIASVLCFINSGF 142 (150)
Q Consensus 109 ~~~~----------~~~~~~~~~~~~~i~~~------~~~~~~~~l~s~~ 142 (150)
+... ..+..+.-|-. +-.+ ...|+|++|++..
T Consensus 357 ~~~~~~~~~~~~~~~v~~k~~v~y~--~gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 357 IEDAIRAYAGEKVDPIKDKLDVHYQ--PGHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECSSC--EEEEEETTTTSTTCCSSEEEEEE
T ss_pred cchhhhhhccccCCcceeccccccC--CCCCccCcCCcCCCCCCEEEEec
Confidence 8532 34444433322 2222 2358899888754
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.49 E-value=0.0009 Score=40.92 Aligned_cols=94 Identities=9% Similarity=0.004 Sum_probs=58.4
Q ss_pred EEEeC--CCEEEeecCCCeEEEEEcccccccccccccccccceeEee-ecCCCEEEEecC-C-----CcEEEEeccCCee
Q 031924 44 VLMKN--GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSE-N-----GLISLVGILPNRI 114 (150)
Q Consensus 44 ~~~~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~-d-----g~i~~~d~~~~~~ 114 (150)
..+|+ |++++-. .++.|.+.|+. +....++.. ++....... +|+|+.|+.... + ..|.+++..+++.
T Consensus 5 ~~sPdi~G~~v~f~-~~~dl~~~d~~--~g~~~~Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~ 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFV-CCDDLWEHDLK--SGSTRKIVS-NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI 80 (281)
T ss_dssp CEEEEEETTEEEEE-ETTEEEEEETT--TCCEEEEEC-SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred ccCCCCCCCEEEEE-eCCcEEEEECC--CCCEEEEec-CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence 35788 8888755 34568888875 233345554 555555555 999998886532 2 2466777777765
Q ss_pred eeeccCC-----CCcceeEEEEcCCccEEEec
Q 031924 115 IQPIAEH-----SEYPIESLGIASVLCFINSG 141 (150)
Q Consensus 115 ~~~~~~~-----~~~~i~~~~~~~~~~~l~s~ 141 (150)
.+..... .........|+|+|+.|+..
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred EEeeecCCCccCccccccccccCCCCCEEEEE
Confidence 4432111 01125678899999988754
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.47 E-value=0.0043 Score=42.53 Aligned_cols=47 Identities=6% Similarity=-0.056 Sum_probs=33.3
Q ss_pred cCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc
Q 031924 90 LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC 136 (150)
Q Consensus 90 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (150)
..+.++++|+.||.++.+|.++++.+..+.......-.=+.|..+|+
T Consensus 486 tagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~Gk 532 (573)
T d1kb0a2 486 TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR 532 (573)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred EcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence 35678888999999999999999998877533221111245566776
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.38 E-value=0.004 Score=42.59 Aligned_cols=49 Identities=8% Similarity=0.095 Sum_probs=34.3
Q ss_pred CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc-EEE
Q 031924 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC-FIN 139 (150)
Q Consensus 91 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 139 (150)
.+.+++.|+.||.++.+|..+++.+..+.......-.-+.|..+|+ ||+
T Consensus 468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~ 517 (560)
T d1kv9a2 468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVA 517 (560)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence 4678888999999999999999998877543221111255667775 544
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.33 E-value=0.0054 Score=42.08 Aligned_cols=50 Identities=10% Similarity=-0.041 Sum_probs=34.7
Q ss_pred CCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc-EEEe
Q 031924 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC-FINS 140 (150)
Q Consensus 91 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 140 (150)
.+.+++.++.||.++.+|.++++.+..+.......-.-+.|..||+ |++.
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v 524 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEE
Confidence 4668888999999999999999998777433221122256666775 5543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.15 E-value=0.0098 Score=38.07 Aligned_cols=108 Identities=13% Similarity=0.002 Sum_probs=64.4
Q ss_pred cCcceEEEEcCC-----C------eEEEEEcCCCeeee--ee-ccCCCcEEEEEEEeCCCEEEeecCC-CeEEEEEcccc
Q 031924 5 ADAMKLLGTSGD-----G------TLSVCNLRKNTVQT--RS-EFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYF 69 (150)
Q Consensus 5 ~~~~~l~~~~~d-----~------~i~i~d~~~~~~~~--~~-~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~i~~~~~~ 69 (150)
.+++.++.|+.+ + .+.+||..+++-.. .. ..+.......++.++|+.++.|+.+ ..+.+||....
T Consensus 29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~ 108 (387)
T d1k3ia3 29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD 108 (387)
T ss_dssp TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccC
Confidence 367777776532 1 36789998875321 11 2222333456788899999988765 68999998633
Q ss_pred c-ccccccccccccceeEeeecCCCEEEEecCC------CcEEEEeccCCe
Q 031924 70 K-DCSDRFVGLSPNSVDALLKLDEDRVITGSEN------GLISLVGILPNR 113 (150)
Q Consensus 70 ~-~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~ 113 (150)
. .....+.. ...........++++++.++.+ ..+.+||+.+.+
T Consensus 109 ~w~~~~~~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 109 SWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp EEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred cccccccccc-cccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 2 11122222 1222223336688988888753 368899987654
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.00 E-value=0.02 Score=37.85 Aligned_cols=95 Identities=11% Similarity=0.020 Sum_probs=58.2
Q ss_pred cCcceEEEEc-CCCeEEEEEcCCCeeeeeec-cCCCcEEEEEEEe--CCCEEEeecCCC------------------eEE
Q 031924 5 ADAMKLLGTS-GDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMK--NGRKVVCGSQSG------------------TVL 62 (150)
Q Consensus 5 ~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~------------------~i~ 62 (150)
+||+++++.. .++.|.+.|+.+.+..+.++ .....+..++..+ +..++++.+.+. .+.
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 4788888876 78999999999988755443 2344567777654 456677665532 245
Q ss_pred EEEcccccccccccccccccceeEeeecCCCEEEEecCC
Q 031924 63 LYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSEN 101 (150)
Q Consensus 63 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d 101 (150)
++|..+ .+...++.. ..+.-..-.+++|+++++.+.+
T Consensus 177 ~ID~~t-m~V~~QV~V-~g~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 177 AVDADK-WEVAWQVLV-SGNLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp EEETTT-TEEEEEEEE-SSCCCCEEECSSSSEEEEEESC
T ss_pred EEecCC-ceEEEEeee-CCChhccccCCCCCEEEEEecc
Confidence 667643 233333332 2222223337888888877644
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.96 E-value=0.01 Score=40.79 Aligned_cols=51 Identities=10% Similarity=0.081 Sum_probs=36.4
Q ss_pred ecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc-EEE
Q 031924 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC-FIN 139 (150)
Q Consensus 89 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 139 (150)
...+.++++|+.||.++.+|.++++.+..+.......-.-+.|..+|+ |++
T Consensus 494 stagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~ 545 (582)
T d1flga_ 494 ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence 445678888999999999999999999887543221122256777885 544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.87 E-value=0.019 Score=35.75 Aligned_cols=93 Identities=15% Similarity=0.070 Sum_probs=60.8
Q ss_pred CeeecCcceEE-EEcCCCeEEEEEcCCCe------e--eeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccc
Q 031924 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNT------V--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (150)
Q Consensus 1 i~~~~~~~~l~-~~~~d~~i~i~d~~~~~------~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 71 (150)
++|+++++.++ +-+..+.|..|++.... . ........+....+++..+|+..++.-..+.|..||.. ++
T Consensus 153 ~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~--G~ 230 (295)
T d2ghsa1 153 ICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GN 230 (295)
T ss_dssp EEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CC
T ss_pred eeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC--Cc
Confidence 36888887655 44578889998875321 1 12223345567889999999877776677889999964 66
Q ss_pred cccccccccccceeEee--ecCCCEEE
Q 031924 72 CSDRFVGLSPNSVDALL--KLDEDRVI 96 (150)
Q Consensus 72 ~~~~~~~~~~~~v~~~~--~~~~~~l~ 96 (150)
.+..+.. ....+++++ -++.+.|+
T Consensus 231 ~~~~i~l-P~~~~T~~~FGG~d~~~Ly 256 (295)
T d2ghsa1 231 HIARYEV-PGKQTTCPAFIGPDASRLL 256 (295)
T ss_dssp EEEEEEC-SCSBEEEEEEESTTSCEEE
T ss_pred EeeEecC-CCCceEEEEEeCCCCCEEE
Confidence 7777664 334566665 35554443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.82 E-value=0.031 Score=38.48 Aligned_cols=50 Identities=10% Similarity=0.019 Sum_probs=34.7
Q ss_pred cCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcCCcc-EEE
Q 031924 90 LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIASVLC-FIN 139 (150)
Q Consensus 90 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 139 (150)
..+.+++.|+.||.++.+|.++++.+..+.......-.=+.|..+|+ |++
T Consensus 482 TagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYva 532 (596)
T d1w6sa_ 482 TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVA 532 (596)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEE
Confidence 35678888999999999999999998877533221122245556775 454
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.23 E-value=0.15 Score=31.03 Aligned_cols=129 Identities=6% Similarity=-0.039 Sum_probs=70.8
Q ss_pred eeecCcceEEEEc-CCC--eEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEcccccccccccc
Q 031924 2 TFAADAMKLLGTS-GDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
+++|...+++... ..+ .|..-++............-....++++.+.++.|... ...+.|...++... .....+.
T Consensus 128 ~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~-~~~~v~~ 206 (263)
T d1npea_ 128 VTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLE 206 (263)
T ss_dssp EEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEE
T ss_pred EEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC-CeEEEEC
Confidence 4566555555432 222 34444554433332233333466899999887777554 46688988887522 2222223
Q ss_pred cccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccCCCCcceeEEEEcC
Q 031924 78 GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLGIAS 133 (150)
Q Consensus 78 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~ 133 (150)
+ ... ...+.-.++.+..+-...+.|...|..+++.+..+..+.......+++.+
T Consensus 207 ~-~~~-P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 207 G-LQY-PFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp C-CCS-EEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred C-CCC-cEEEEEECCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence 3 222 23454335555566667788999999888877666433322244555544
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.88 E-value=0.19 Score=32.82 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=35.1
Q ss_pred eeecCcceEEEE-----cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEe
Q 031924 2 TFAADAMKLLGT-----SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC 54 (150)
Q Consensus 2 ~~~~~~~~l~~~-----~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 54 (150)
.++|++++++.+ +.--.++++|+++++.+...... .....+.|.++++.|+-
T Consensus 131 ~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~~D~~~~~Y 187 (430)
T d1qfma1 131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFY 187 (430)
T ss_dssp EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEE
T ss_pred EecCCCCEEEEEeccccCchheeEEeccCcceeccccccc-ccccceEEcCCCCEEEE
Confidence 578999988854 22357999999999865322111 11246789999887754
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=94.54 E-value=0.37 Score=33.03 Aligned_cols=111 Identities=11% Similarity=0.049 Sum_probs=64.5
Q ss_pred cceEEEEcCCCeEEEEEc-CCCeeeeeeccCCC-----------cEEEEEEEeC----CCEEEeecCCCeEEEEEccccc
Q 031924 7 AMKLLGTSGDGTLSVCNL-RKNTVQTRSEFSEE-----------ELTSVVLMKN----GRKVVCGSQSGTVLLYSWGYFK 70 (150)
Q Consensus 7 ~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~-----------~v~~~~~~~~----~~~l~~~~~d~~i~i~~~~~~~ 70 (150)
+..+++++.++.+...|. ++|+.+.+...... .-+.+++-++ +..++.++.|+.|.-.|.+ .+
T Consensus 63 g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~-tG 141 (596)
T d1w6sa_ 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE-TG 141 (596)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT-TC
T ss_pred CEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccc-cC
Confidence 444445555678888886 57888876542211 0134555443 3468889999999999975 44
Q ss_pred cccccccccc--c-cceeEeeecCCCEEEEecC------CCcEEEEeccCCeeeeec
Q 031924 71 DCSDRFVGLS--P-NSVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPI 118 (150)
Q Consensus 71 ~~~~~~~~~~--~-~~v~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~ 118 (150)
+....+.... . ..++.--..-+..++.+.. .|.|+-+|+.+++.+..+
T Consensus 142 ~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~ 198 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (596)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred ceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEe
Confidence 5444442101 1 1111100112445555543 488999999999987764
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=94.44 E-value=0.31 Score=30.79 Aligned_cols=101 Identities=17% Similarity=0.038 Sum_probs=57.1
Q ss_pred EEEEEEeCCCEEEeecCC-----C------eEEEEEcccccccccc--cccccccce-eEeeecCCCEEEEecCC-CcEE
Q 031924 41 TSVVLMKNGRKVVCGSQS-----G------TVLLYSWGYFKDCSDR--FVGLSPNSV-DALLKLDEDRVITGSEN-GLIS 105 (150)
Q Consensus 41 ~~~~~~~~~~~l~~~~~d-----~------~i~i~~~~~~~~~~~~--~~~~~~~~v-~~~~~~~~~~l~~~~~d-g~i~ 105 (150)
.......+|+.++.|+.+ + .+.+||..+. ..... ....+.... .....+++++++.|+.+ ..+.
T Consensus 23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~-~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG-IVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 101 (387)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC-CBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCC-cEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence 333344567777776632 1 3678998533 32221 111011111 22336788888888765 5899
Q ss_pred EEeccCCeeee--eccCCCCcceeEEEEcCCccEEEecccc
Q 031924 106 LVGILPNRIIQ--PIAEHSEYPIESLGIASVLCFINSGFLS 144 (150)
Q Consensus 106 ~~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~~ 144 (150)
+||..+..-.. .+... . .-..++..+||++++.|+..
T Consensus 102 ~yd~~~~~w~~~~~~~~~-r-~~~~~~~~~dG~v~v~GG~~ 140 (387)
T d1k3ia3 102 LYDSSSDSWIPGPDMQVA-R-GYQSSATMSDGRVFTIGGSW 140 (387)
T ss_dssp EEEGGGTEEEECCCCSSC-C-SSCEEEECTTSCEEEECCCC
T ss_pred EecCccCccccccccccc-c-cccceeeecCCceeeecccc
Confidence 99998765322 22111 1 13456778899999988753
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.41 E-value=0.26 Score=29.91 Aligned_cols=134 Identities=9% Similarity=-0.023 Sum_probs=72.8
Q ss_pred eeecCcceEEEE-cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEE-eecCCCeEEEEEcccccccccccccc
Q 031924 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGL 79 (150)
Q Consensus 2 ~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~ 79 (150)
+|++..+.|+-+ ..++.|+..++........+......+.++++..-+..|. +-...+.|.+.++... ....+...
T Consensus 42 d~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~--~~~~l~~~ 119 (263)
T d1npea_ 42 AFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT--QRRVLFDT 119 (263)
T ss_dssp EEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEECS
T ss_pred EEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCc--eEEEEecc
Confidence 566666656555 4667788888776544433433445788999987666665 5556689999998532 22222210
Q ss_pred cccceeEee-ecCCCEEE-EecCCCc--EEEEeccCCeeeeeccCCCCcceeEEEEcCCccEE
Q 031924 80 SPNSVDALL-KLDEDRVI-TGSENGL--ISLVGILPNRIIQPIAEHSEYPIESLGIASVLCFI 138 (150)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~-~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (150)
.......+. .|...++. +-...+. |.-.++............-. ....+++++.++.|
T Consensus 120 ~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~-~P~glaiD~~~~~l 181 (263)
T d1npea_ 120 GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG-LPNGLTFDAFSSQL 181 (263)
T ss_dssp SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCS-CEEEEEEETTTTEE
T ss_pred cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeeccc-ccceEEEeecCcEE
Confidence 223455555 66555444 4332233 44445543222222222223 36788888766544
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=94.02 E-value=0.21 Score=34.07 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=41.0
Q ss_pred CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 17 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
|.+.-||+.+++.+.+.+... +...-..+..+..+++|+.||.++.||.+ .++.+-++.
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~-TGe~LW~~~ 515 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAA-TGEKLWEAP 515 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETT-TCCEEEEEE
T ss_pred ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECC-CCcEeEEEE
Confidence 467888998888876654322 11222234468888899999999999985 567776654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.89 E-value=0.35 Score=29.37 Aligned_cols=109 Identities=12% Similarity=-0.068 Sum_probs=63.0
Q ss_pred eeecCcceEEEE-cCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeec--CCCeEEEEEccccccccccccc
Q 031924 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 2 ~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
++++.++.|+.+ ...++|.+.++..................++..|...++.-.. ..+.|.-.++. +.....+..
T Consensus 83 AvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d--Gs~~~~l~~ 160 (266)
T d1ijqa1 83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVT 160 (266)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEEC
T ss_pred EEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccC--CCceecccc
Confidence 455545545544 5677899999886654444445556788999998655554433 34556666654 322222221
Q ss_pred ccccceeEee-ecCCC-EEEEecCCCcEEEEeccCC
Q 031924 79 LSPNSVDALL-KLDED-RVITGSENGLISLVGILPN 112 (150)
Q Consensus 79 ~~~~~v~~~~-~~~~~-~l~~~~~dg~i~~~d~~~~ 112 (150)
..-.....+. .+.++ +..+-...+.|...++...
T Consensus 161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~ 196 (266)
T d1ijqa1 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (266)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cccceeeEEEeeccccEEEEecCCcCEEEEEECCCC
Confidence 0223345555 55555 4444466788888888543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.84 E-value=0.15 Score=34.83 Aligned_cols=59 Identities=19% Similarity=0.110 Sum_probs=42.1
Q ss_pred CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 17 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
|.|.-+|+.+++...+..... ++..-..+..+..++.|+.||.++.||.+ .++++-++.
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~-TGe~LW~~~ 524 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAK-SGKELWKFQ 524 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETT-TCCEEEEEE
T ss_pred CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECC-CCcEeEEEE
Confidence 678889999998876655332 22222334567788889999999999985 667776665
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.54 E-value=0.25 Score=33.65 Aligned_cols=59 Identities=12% Similarity=-0.042 Sum_probs=38.9
Q ss_pred CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 17 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
|.|.-+|+++++.+.+...... ..+-.....+..++.|+.||.++.+|.+ .++.+-++.
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~-~~~g~l~TagglVf~G~~dg~l~A~Da~-tGe~lW~~~ 502 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFA-AWGGTLYTKGGLVWYATLDGYLKALDNK-DGKELWNFK 502 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSC-CCSBCEEETTTEEEEECTTSEEEEEETT-TCCEEEEEE
T ss_pred ccEEEeccCCCceeeEcCCCCC-CCcceeEecCCEEEEECCCCeEEEEECC-CCcEEEEEE
Confidence 5688888888887755432211 1111223356778889999999999985 567766554
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=93.14 E-value=0.43 Score=32.36 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=41.2
Q ss_pred CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEcccccccccccc
Q 031924 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (150)
Q Consensus 17 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 77 (150)
|.+.-+|+.+++.+.+.... .+...-...-.+..++.|+.||.++.||.+ .++.+-++.
T Consensus 438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~-tGe~LW~~~ 496 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSAD-KGEALWQFE 496 (560)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETT-TCCEEEEEE
T ss_pred cceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECC-CCcEeEEEE
Confidence 57888999999887655422 122222334467788899999999999985 567776654
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.11 E-value=0.8 Score=28.70 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=43.8
Q ss_pred eecCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEE
Q 031924 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (150)
Q Consensus 3 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 63 (150)
.++.-..++.-+.-|.+++||++++.++..-.-..+.+...+-..+..-+++...+|.+..
T Consensus 263 vs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 263 ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred eeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence 4455567777889999999999999988666555666665555555555666667777654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.08 E-value=0.7 Score=27.96 Aligned_cols=118 Identities=9% Similarity=-0.112 Sum_probs=64.3
Q ss_pred eeecCcceEEEEc--CCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEeCCCEEEee-cCCCeEEEEEcccccc-cccccc
Q 031924 2 TFAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKD-CSDRFV 77 (150)
Q Consensus 2 ~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~-~~~~~~ 77 (150)
+++|...+++... ..+.|...++................+++++.+.++.|.-. ...+.|...++..... .+....
T Consensus 126 ~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~ 205 (266)
T d1ijqa1 126 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE 205 (266)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT
T ss_pred EEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCC
Confidence 4455444444432 33456666665443333333334567899999887766554 5668888888753221 111111
Q ss_pred cccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeeccC
Q 031924 78 GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (150)
Q Consensus 78 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 120 (150)
. .......+.-..+.++.+-..++.|+..+..+++....+..
T Consensus 206 ~-~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 206 K-RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp T-TTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred C-cccccEEEEEECCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence 1 11223345433455555556778888888777765555543
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.68 E-value=0.75 Score=27.49 Aligned_cols=105 Identities=11% Similarity=0.079 Sum_probs=59.9
Q ss_pred CcceEEEEcCCCeEEEEEcCCCeeeeeeccCC-------CcEEEEEEEeCCCEEEeecCCCeEEEEEccccccccccccc
Q 031924 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-------EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (150)
Q Consensus 6 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 78 (150)
+.++++.+...|.+.++-+..++.++.-+..- ..+-.+-|..| +.-|-.-..+.+.++...++..+.-..
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~~~~Pk~~ldfi~f~RD---V~kGkE~Hai~~~Nlk~~GEE~~i~sp 101 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRD---VSKGAEQHALFKVNTSRPGEEQRLEAV 101 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECCSSCCSEECEECTTBSEEEEEEE---CSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEecccccCcCCCccCcceEEEEee---hhcCcceeeEEEEccCCCCeeeEecCC
Confidence 34577788788999999988876543222111 11112222222 001223345666676533433322222
Q ss_pred ccccceeEeeecCCCEEEEecCCCcEEEEeccCCee
Q 031924 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRI 114 (150)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 114 (150)
.+-.|.+...-+.+...+|+......+|-++.++.
T Consensus 102 -k~vRI~S~~yddk~vvF~Gased~~~LYviegGkl 136 (313)
T d2hu7a1 102 -KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL 136 (313)
T ss_dssp -CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE
T ss_pred -ceEEEEEeeecCceEEEecccCCceEEEEEeCCce
Confidence 33556666666778888998888888888877764
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.42 E-value=1.2 Score=29.27 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=34.4
Q ss_pred CeeecCcceEEEEcCCCeEEEEEcCCCeee--eeec------cCCCcEEEEEEEeC
Q 031924 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRSE------FSEEELTSVVLMKN 48 (150)
Q Consensus 1 i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~------~~~~~v~~~~~~~~ 48 (150)
|+|.|+++++++--.+|.|++++..+++.. ..+. .-+..+..++++|+
T Consensus 32 la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 32 LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred EEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 578999998887755799999998776532 2211 12356889999986
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.38 E-value=1.9 Score=27.02 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=54.9
Q ss_pred CeEEEEEcCCCeeeeeeccCCCcEEEEEEEeC--CCEEE-e---ecCCCeEEEEEcccccccccccc-------c---c-
Q 031924 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN--GRKVV-C---GSQSGTVLLYSWGYFKDCSDRFV-------G---L- 79 (150)
Q Consensus 17 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~-~---~~~d~~i~i~~~~~~~~~~~~~~-------~---~- 79 (150)
|.+.+|..+.+ ..+.+++|......+...-+ ...++ - +...+++++-++.........+. . .
T Consensus 176 G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~ 254 (327)
T d1utca2 176 GAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ 254 (327)
T ss_dssp EEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCT
T ss_pred EEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCcccc
Confidence 67889998876 33445555433322222110 11111 1 22346888888754211111111 0 0
Q ss_pred cccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeecc
Q 031924 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIA 119 (150)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 119 (150)
..-++.-..+..-..+..-+.-|.+++||+.++.++..-.
T Consensus 255 ~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nR 294 (327)
T d1utca2 255 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 294 (327)
T ss_dssp TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEee
Confidence 1122322336666788888999999999999998765543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.17 E-value=2.2 Score=27.56 Aligned_cols=99 Identities=10% Similarity=0.002 Sum_probs=53.2
Q ss_pred cEEEEEEEeCCCEEEee-cC----CCeEEEEEcccccccccccccccccceeEe-eecCCCEEEEecCC-----------
Q 031924 39 ELTSVVLMKNGRKVVCG-SQ----SGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN----------- 101 (150)
Q Consensus 39 ~v~~~~~~~~~~~l~~~-~~----d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d----------- 101 (150)
.+...+++|++++++.+ +. .-.++++|+.+.......+.. .....+ +.++++.|+-...+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~---~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~ 202 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc---ccccceEEcCCCCEEEEEEeccccCccccccc
Confidence 34567889999988633 22 247899999644222223322 111223 36677766543221
Q ss_pred -----CcEEEEeccCCee--eeeccCCCC-cceeEEEEcCCccEEEe
Q 031924 102 -----GLISLVGILPNRI--IQPIAEHSE-YPIESLGIASVLCFINS 140 (150)
Q Consensus 102 -----g~i~~~d~~~~~~--~~~~~~~~~-~~i~~~~~~~~~~~l~s 140 (150)
..|+.+.+.+... ...+..... .-+..+..++++++++.
T Consensus 203 ~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i 249 (430)
T d1qfma1 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL 249 (430)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred ccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence 2566777655321 122222211 12566778999998764
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=87.29 E-value=2.4 Score=26.97 Aligned_cols=131 Identities=14% Similarity=0.173 Sum_probs=70.4
Q ss_pred cCcceEEEEcCCCeEEEEEcCCCeeeeeeccCCCcEEEEEEEe----CCC--EEEeec-CC---CeEEEEEccccccccc
Q 031924 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK----NGR--KVVCGS-QS---GTVLLYSWGYFKDCSD 74 (150)
Q Consensus 5 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~----~~~--~l~~~~-~d---~~i~i~~~~~~~~~~~ 74 (150)
|+..+++.....+-|.+||++ |+.+..+. .+.++-+..-. ++. -+++++ .+ .+|.+|.+......+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 455677777777779999986 66666554 34556555432 222 244444 22 3677887642222222
Q ss_pred ccccc------ccccee--Eee-ec-CCC-EEEEecCCCcEEEEecc---CC----eeeeeccCCCCcceeEEEEcCCcc
Q 031924 75 RFVGL------SPNSVD--ALL-KL-DED-RVITGSENGLISLVGIL---PN----RIIQPIAEHSEYPIESLGIASVLC 136 (150)
Q Consensus 75 ~~~~~------~~~~v~--~~~-~~-~~~-~l~~~~~dg~i~~~d~~---~~----~~~~~~~~~~~~~i~~~~~~~~~~ 136 (150)
.+... ....+. |+. .+ ++. +++....+|.+..|.+. .+ +.++.+... . .+..+.++++..
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~-~-q~EGCVvDde~~ 192 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN-S-QTEGMAADDEYG 192 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS-S-CEEEEEEETTTT
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC-C-ccceEEEeCCCC
Confidence 22110 011233 332 34 344 45666778999888763 22 244455332 3 377888887655
Q ss_pred EEEe
Q 031924 137 FINS 140 (150)
Q Consensus 137 ~l~s 140 (150)
.|..
T Consensus 193 ~Lyi 196 (353)
T d1h6la_ 193 SLYI 196 (353)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 5443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=82.36 E-value=4.1 Score=25.54 Aligned_cols=101 Identities=11% Similarity=0.239 Sum_probs=55.2
Q ss_pred EEEEEEEeCCCEEEeecC------------CCeEEEEEcccccccccccc--c-------ccccceeEeeecCCC-EEEE
Q 031924 40 LTSVVLMKNGRKVVCGSQ------------SGTVLLYSWGYFKDCSDRFV--G-------LSPNSVDALLKLDED-RVIT 97 (150)
Q Consensus 40 v~~~~~~~~~~~l~~~~~------------d~~i~i~~~~~~~~~~~~~~--~-------~~~~~v~~~~~~~~~-~l~~ 97 (150)
..++...|+|..+++++. .|.+.++|+.........+. + -++..+......++. .|++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 346778888887766542 48999999864322222221 1 012222222234454 3333
Q ss_pred ec---CCCcEEEEeccCC--ee--eeeccCCCCcceeEEEEcCCccEEEe
Q 031924 98 GS---ENGLISLVGILPN--RI--IQPIAEHSEYPIESLGIASVLCFINS 140 (150)
Q Consensus 98 ~~---~dg~i~~~d~~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~l~s 140 (150)
.. ...+|.++++... +. ...+........+.+++..++.+++|
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~T 166 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYAT 166 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEE
T ss_pred EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEe
Confidence 32 3457888877532 21 22332222234789999999999988
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=82.23 E-value=4.1 Score=25.51 Aligned_cols=139 Identities=10% Similarity=0.063 Sum_probs=67.1
Q ss_pred eeecCcceEEEEcC------------CCeEEEEEcCCCeee-ee--eccC-C----CcEEEEEEE--eCCC-EEEeec--
Q 031924 2 TFAADAMKLLGTSG------------DGTLSVCNLRKNTVQ-TR--SEFS-E----EELTSVVLM--KNGR-KVVCGS-- 56 (150)
Q Consensus 2 ~~~~~~~~l~~~~~------------d~~i~i~d~~~~~~~-~~--~~~~-~----~~v~~~~~~--~~~~-~l~~~~-- 56 (150)
+..|++..+++++. .|.|.++|+.+.+.. .. +.+. . -....+..- ++|+ +|++..
T Consensus 41 ~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~ 120 (340)
T d1v04a_ 41 EILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP 120 (340)
T ss_dssp EECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECS
T ss_pred EECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEecc
Confidence 45677777766532 489999998775422 11 1111 1 123555543 3454 344432
Q ss_pred -CCCeEEEEEccccccccc---ccccccccceeEee-ecCCCEEEEec--C-------------CCcEEEEeccCCeeee
Q 031924 57 -QSGTVLLYSWGYFKDCSD---RFVGLSPNSVDALL-KLDEDRVITGS--E-------------NGLISLVGILPNRIIQ 116 (150)
Q Consensus 57 -~d~~i~i~~~~~~~~~~~---~~~~~~~~~v~~~~-~~~~~~l~~~~--~-------------dg~i~~~d~~~~~~~~ 116 (150)
...+|.+|++...+.... .+..........+. ..++..+++-. . -+...+|....++. +
T Consensus 121 ~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~-~ 199 (340)
T d1v04a_ 121 GSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-R 199 (340)
T ss_dssp TTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE-E
T ss_pred CCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce-E
Confidence 346788888753332211 11110112233444 55666666621 1 11223333333332 1
Q ss_pred eccCCCCcceeEEEEcCCccEEEecc
Q 031924 117 PIAEHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 117 ~~~~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
.....-.+ .+.++++||+++|..+.
T Consensus 200 ~~~~~l~~-pNGI~~s~d~~~lyVa~ 224 (340)
T d1v04a_ 200 VVAEGFDF-ANGINISPDGKYVYIAE 224 (340)
T ss_dssp EEEEEESS-EEEEEECTTSSEEEEEE
T ss_pred EEcCCCCc-cceeEECCCCCEEEEEe
Confidence 22122233 78899999997665443
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.67 E-value=4.8 Score=25.83 Aligned_cols=133 Identities=8% Similarity=-0.008 Sum_probs=71.7
Q ss_pred eeecCcceEEEEcCCCeEEEEEcCC---------CeeeeeeccCCCcEEEEEEEeCCCEEEeecCCCeEEEEEccccccc
Q 031924 2 TFAADAMKLLGTSGDGTLSVCNLRK---------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (150)
Q Consensus 2 ~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 72 (150)
++++...+++.++.+ .+.|...+. .......+..-..+..++|+.+ .+++. .++.+..++..... .
T Consensus 43 AVsn~~GLl~aa~~~-~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~-~ 117 (381)
T d1xipa_ 43 DISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLEELS-E 117 (381)
T ss_dssp EEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESSSTT-C
T ss_pred EEeCCCCEEEEECCC-EEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEeeccc-c
Confidence 455555567777666 566766421 0000001111235888888744 45544 44567777764321 1
Q ss_pred ccccccccccceeEeeecCCCEEEEecCCCcEEEEeccCCeeeeecc-----CCCCcceeEEEEcCCccEEEecc
Q 031924 73 SDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIA-----EHSEYPIESLGIASVLCFINSGF 142 (150)
Q Consensus 73 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~s~~ 142 (150)
...... -..++..+. +....++....++.+.++++..++...... .-.+ .+.+++|++.|..++++.
T Consensus 118 ~~~~~~-~~~~~~~~~-~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~-~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 118 FRTVTS-FEKPVFQLK-NVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTN-SQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp EEEEEE-CSSCEEEEE-ECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECS-SEEEEEETTSCEEEEEEE
T ss_pred cccccc-cccccccee-cCCceeEEEecCCCEEEEEeccCccccccCCcceEEecC-CceEEEEeCCcEEEEEeC
Confidence 111111 223344443 333456666778899999887765332211 0113 488899999998887764
|