Citrus Sinensis ID: 031940

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI
Secondary Structure (PSIPRED)
ccccccccEEEEEEccccccccEEEEEEEEccccEEEEEcccccccccEEEEEEEEcHHHHHHHHHHHHccccccccccccccccccccEEEEEEEccEEEEEEEcccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEEEEccEEEEEEEEEccccEEEEEEEEcccccEEEEEEEEEcHHHHHHHHHHHHHHcHHHcccccccccEccEEEEEEEEEccEEEEEEEcccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MAGEEDGEFYLRYYVGhkgkfgheflefefrpdgklryannsnykndtmirkevfltpAVLRECRRIISEseimkeddnnwpepdrvgrQELEIVMgnehisfttskigslvdvqsskdpegLRIFYYLVQDLKCFVFSLISlhfkikpi
Flexible Loop (DISEMBL)
MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANnsnykndtmirkevfltpavLRECRRIIseseimkeddnnwpepdRVGRQELEIVMGNEHisfttskigslvDVQSSKDPEGLRIFYYLVQDLKCFVFSLISlhfkikpi
Low Complexity Region (SEG)
MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI
Disordered region (IsUnstruct)
*******EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIIS**********************LEIVMGNEHISFTTSKIGSLVDVQ****PEGLRIFYYLVQDLKCFVFSLISLHFKI***
Disordered Region (DISOPRED)
******G***LRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI
Disordered Region (DISEMBL)
MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI
Disordered Region (DISPRO)
******GEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
P49030	160	Protein mago nashi homolo	yes	no	0.993	0.931	0.921	3e-78
O65806	149	Protein mago nashi homolo	N/A	no	0.986	0.993	0.932	1e-77
O23676	150	Protein mago nashi homolo	yes	no	1.0	1.0	0.9	3e-77
Q0VC92	148	Protein mago nashi homolo	yes	no	0.96	0.972	0.812	3e-66
Q96A72	148	Protein mago nashi homolo	yes	no	0.96	0.972	0.812	3e-66
Q27W02	146	Protein mago nashi homolo	yes	no	0.966	0.993	0.806	4e-66
P61327	146	Protein mago nashi homolo	yes	no	0.966	0.993	0.806	4e-66
P61326	146	Protein mago nashi homolo	yes	no	0.966	0.993	0.806	4e-66
Q3ZBV3	146	Protein mago nashi homolo	yes	no	0.966	0.993	0.806	4e-66
P50594	146	Protein mago nashi homolo	yes	no	0.96	0.986	0.812	4e-66

>sp|P49030|MGN_ORYSJ Protein mago nashi homolog OS=Oryza sativa subsp. japonica GN=Os12g0287200 PE=2 SV=2

 Score =  289 bits (740), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 140/152 (92%), Positives = 146/152 (96%), Gaps = 3/152 (1%)

Query: 2   AGEE---DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTP 58
           AGE+    GEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVF++P
Sbjct: 7   AGEDVPGGGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSP 66

Query: 59  AVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSK 118
           +VLRE RRII ESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQ+SK
Sbjct: 67  SVLREARRIIQESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSK 126

Query: 119 DPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 150
           DPEGLRIFYYLVQDLKCFVFSLI+LHFKIKPI
Sbjct: 127 DPEGLRIFYYLVQDLKCFVFSLINLHFKIKPI 158

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O65806|MGN_EUPLA Protein mago nashi homolog OS=Euphorbia lagascae PE=2 SV=1

 Score =  287 bits (735), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 138/148 (93%), Positives = 141/148 (95%)

Query: 3   GEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLR 62
             ED EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVL+
Sbjct: 2   ATEDNEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLK 61

Query: 63  ECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEG 122
           ECRRII+ESEIMKEDD NWP PDRVGRQELEIVMGNE+ISFTTSKIGSLVDVQ SKDPEG
Sbjct: 62  ECRRIIAESEIMKEDDANWPGPDRVGRQELEIVMGNEYISFTTSKIGSLVDVQRSKDPEG 121

Query: 123 LRIFYYLVQDLKCFVFSLISLHFKIKPI 150
           LRIFYYLV DLKCFVFSLISLHFKIKPI
Sbjct: 122 LRIFYYLVHDLKCFVFSLISLHFKIKPI 149

Euphorbia lagascae (taxid: 54672)

>sp|O23676|MGN_ARATH Protein mago nashi homolog OS=Arabidopsis thaliana GN=At1g02140 PE=2 SV=1

 Score =  286 bits (732), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 135/150 (90%), Positives = 142/150 (94%)

Query: 1   MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAV 60
           MA EE  EFYLRYYVGHKGKFGHEFLEFEFR DGKLRYANNSNYKNDT+IRKEVFLTPAV
Sbjct: 1   MAAEEATEFYLRYYVGHKGKFGHEFLEFEFREDGKLRYANNSNYKNDTIIRKEVFLTPAV 60

Query: 61  LRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDP 120
           L+EC+RI+SESEI+KEDDNNWPEPDRVG+QELEIV+GNEHISF TSKIGSLVD QSS DP
Sbjct: 61  LKECKRIVSESEILKEDDNNWPEPDRVGKQELEIVLGNEHISFATSKIGSLVDCQSSNDP 120

Query: 121 EGLRIFYYLVQDLKCFVFSLISLHFKIKPI 150
           EGLRIFYYLVQDLKC VFSLISLHFKIKPI
Sbjct: 121 EGLRIFYYLVQDLKCLVFSLISLHFKIKPI 150

Arabidopsis thaliana (taxid: 3702)

>sp|Q0VC92|MGN2_BOVIN Protein mago nashi homolog 2 OS=Bos taurus GN=MAGOHB PE=2 SV=1

 Score =  249 bits (637), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 117/144 (81%), Positives = 128/144 (88%)

Query: 7   GEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRR 66
            +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +R
Sbjct: 5   SDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKR 64

Query: 67  IISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIF 126
           II +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+F
Sbjct: 65  IIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVF 124

Query: 127 YYLVQDLKCFVFSLISLHFKIKPI 150
           YYLVQDLKC VFSLI LHFKIKPI
Sbjct: 125 YYLVQDLKCLVFSLIGLHFKIKPI 148

Involved in mRNA splicing and in the nonsense-mediated decay (NMD) pathway.

Bos taurus (taxid: 9913)

>sp|Q96A72|MGN2_HUMAN Protein mago nashi homolog 2 OS=Homo sapiens GN=MAGOHB PE=1 SV=1

 Score =  249 bits (637), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 117/144 (81%), Positives = 128/144 (88%)

Query: 7   GEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRR 66
            +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +R
Sbjct: 5   SDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKR 64

Query: 67  IISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIF 126
           II +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+F
Sbjct: 65  IIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVF 124

Query: 127 YYLVQDLKCFVFSLISLHFKIKPI 150
           YYLVQDLKC VFSLI LHFKIKPI
Sbjct: 125 YYLVQDLKCLVFSLIGLHFKIKPI 148

Involved in mRNA splicing and in the nonsense-mediated decay (NMD) pathway.

Homo sapiens (taxid: 9606)

>sp|Q27W02|MGN_RAT Protein mago nashi homolog OS=Rattus norvegicus GN=Magoh PE=2 SV=1

 Score =  249 bits (636), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 117/145 (80%), Positives = 129/145 (88%)

Query: 6   DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECR 65
           + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +
Sbjct: 2   ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELK 61

Query: 66  RIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRI 125
           RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+
Sbjct: 62  RIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRV 121

Query: 126 FYYLVQDLKCFVFSLISLHFKIKPI 150
           FYYLVQDLKC VFSLI LHFKIKPI
Sbjct: 122 FYYLVQDLKCLVFSLIGLHFKIKPI 146

Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. Core components of the EJC, that remains bound to spliced mRNAs throughout all stages of mRNA metabolism, functions to mark the position of the exon-exon junction in the mature mRNA and thereby influences downstream processes of gene expression including mRNA splicing, nuclear mRNA export, subcellular mRNA localization, translation efficiency and nonsense-mediated mRNA decay (NMD). Remains associated with the mRNA after its export to the cytoplasm and require translation of the mRNA for removal. The heterodimer MAGOH-RBM8A interacts with PYM that function to enhance the translation of EJC-bearing spliced mRNAs by recruiting them to the ribosomal 48S preinitiation complex.

Rattus norvegicus (taxid: 10116)

>sp|P61327|MGN_MOUSE Protein mago nashi homolog OS=Mus musculus GN=Magoh PE=2 SV=1

 Score =  249 bits (636), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 117/145 (80%), Positives = 129/145 (88%)

Query: 6   DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECR 65
           + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +
Sbjct: 2   ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELK 61

Query: 66  RIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRI 125
           RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+
Sbjct: 62  RIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRV 121

Query: 126 FYYLVQDLKCFVFSLISLHFKIKPI 150
           FYYLVQDLKC VFSLI LHFKIKPI
Sbjct: 122 FYYLVQDLKCLVFSLIGLHFKIKPI 146

Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. Core components of the EJC, that remains bound to spliced mRNAs throughout all stages of mRNA metabolism, functions to mark the position of the exon-exon junction in the mature mRNA and thereby influences downstream processes of gene expression including mRNA splicing, nuclear mRNA export, subcellular mRNA localization, translation efficiency and nonsense-mediated mRNA decay (NMD). Remains associated with the mRNA after its export to the cytoplasm and require translation of the mRNA for removal. The heterodimer MAGOH-RBM8A interacts with PYM that function to enhance the translation of EJC-bearing spliced mRNAs by recruiting them to the ribosomal 48S preinitiation complex.

Mus musculus (taxid: 10090)

>sp|P61326|MGN_HUMAN Protein mago nashi homolog OS=Homo sapiens GN=MAGOH PE=1 SV=1

 Score =  249 bits (636), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 117/145 (80%), Positives = 129/145 (88%)

Query: 6   DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECR 65
           + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +
Sbjct: 2   ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELK 61

Query: 66  RIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRI 125
           RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+
Sbjct: 62  RIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRV 121

Query: 126 FYYLVQDLKCFVFSLISLHFKIKPI 150
           FYYLVQDLKC VFSLI LHFKIKPI
Sbjct: 122 FYYLVQDLKCLVFSLIGLHFKIKPI 146

Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. Core components of the EJC, that remains bound to spliced mRNAs throughout all stages of mRNA metabolism, functions to mark the position of the exon-exon junction in the mature mRNA and thereby influences downstream processes of gene expression including mRNA splicing, nuclear mRNA export, subcellular mRNA localization, translation efficiency and nonsense-mediated mRNA decay (NMD). Remains associated with the mRNA after its export to the cytoplasm and require translation of the mRNA for removal. The heterodimer MAGOH-RBM8A interacts with PYM that function to enhance the translation of EJC-bearing spliced mRNAs by recruiting them to the ribosomal 48S preinitiation complex.

Homo sapiens (taxid: 9606)

>sp|Q3ZBV3|MGN_BOVIN Protein mago nashi homolog OS=Bos taurus GN=MAGOH PE=2 SV=1

 Score =  249 bits (636), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 117/145 (80%), Positives = 129/145 (88%)

Query: 6   DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECR 65
           + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +
Sbjct: 2   ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELK 61

Query: 66  RIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRI 125
           RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+
Sbjct: 62  RIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRV 121

Query: 126 FYYLVQDLKCFVFSLISLHFKIKPI 150
           FYYLVQDLKC VFSLI LHFKIKPI
Sbjct: 122 FYYLVQDLKCLVFSLIGLHFKIKPI 146

Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. Core components of the EJC, that remains bound to spliced mRNAs throughout all stages of mRNA metabolism, functions to mark the position of the exon-exon junction in the mature mRNA and thereby influences downstream processes of gene expression including mRNA splicing, nuclear mRNA export, subcellular mRNA localization, translation efficiency and nonsense-mediated mRNA decay (NMD). Remains associated with the mRNA after its export to the cytoplasm and require translation of the mRNA for removal. The heterodimer MAGOH-RBM8A interacts with PYM that function to enhance the translation of EJC-bearing spliced mRNAs by recruiting them to the ribosomal 48S preinitiation complex.

Bos taurus (taxid: 9913)

>sp|P50594|MGN_CHICK Protein mago nashi homolog OS=Gallus gallus GN=MAGOH PE=2 SV=2

 Score =  249 bits (636), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 117/144 (81%), Positives = 128/144 (88%)

Query: 7   GEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRR 66
            +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +R
Sbjct: 3   SDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKR 62

Query: 67  IISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIF 126
           II +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+F
Sbjct: 63  IIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVF 122

Query: 127 YYLVQDLKCFVFSLISLHFKIKPI 150
           YYLVQDLKC VFSLI LHFKIKPI
Sbjct: 123 YYLVQDLKCLVFSLIGLHFKIKPI 146

Involved in mRNA splicing and in the nonsense-mediated decay (NMD) pathway.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
449431952	152	PREDICTED: protein mago nashi homolog is	1.0	0.986	0.960	1e-79
225454992	151	PREDICTED: protein mago nashi homolog is	0.993	0.986	0.953	6e-79
42565403	176	mago nashi-like protein [Hyacinthus orie	1.0	0.852	0.946	8e-79
351726062	151	uncharacterized protein LOC100305742 [Gl	0.98	0.973	0.965	9e-79
146220096	151	mago nashi-like protein 1 [Physalis pube	0.98	0.973	0.952	1e-78
253684301	149	mago nashi [Lycoris radiata]	0.953	0.959	0.993	1e-78
388490798	151	unknown [Lotus japonicus]	0.98	0.973	0.959	1e-78
118482264	152	unknown [Populus trichocarpa] gi|1184890	0.98	0.967	0.959	2e-78
255627745	151	unknown [Glycine max]	0.98	0.973	0.959	2e-78
388521507	151	unknown [Lotus japonicus]	0.98	0.973	0.959	2e-78

>gi|449431952|ref|XP_004133764.1| PREDICTED: protein mago nashi homolog isoform 2 [Cucumis sativus] gi|449478037|ref|XP_004155203.1| PREDICTED: protein mago nashi homolog isoform 2 [Cucumis sativus]

 Score =  300 bits (769), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 149/152 (98%), Gaps = 2/152 (1%)

Query: 1   MAGE--EDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTP 58
           MA E  E+GEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEV+LTP
Sbjct: 1   MAAEDLENGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVYLTP 60

Query: 59  AVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSK 118
           AVLRECRRIIS+SEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSK
Sbjct: 61  AVLRECRRIISDSEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSK 120

Query: 119 DPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 150
           DPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI
Sbjct: 121 DPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 152

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454992|ref|XP_002281294.1| PREDICTED: protein mago nashi homolog isoform 1 [Vitis vinifera] gi|359490048|ref|XP_003634021.1| PREDICTED: protein mago nashi homolog isoform 2 [Vitis vinifera]

 Score =  298 bits (762), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 142/149 (95%), Positives = 145/149 (97%)

Query: 2   AGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVL 61
            GE+ GEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFL PAVL
Sbjct: 3   TGEDSGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLNPAVL 62

Query: 62  RECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPE 121
           RECRRIIS+SEIMKEDDNNWPEPD VGRQELEIVMGNEHISFTTSKIGSL+DVQSSKDPE
Sbjct: 63  RECRRIISDSEIMKEDDNNWPEPDNVGRQELEIVMGNEHISFTTSKIGSLIDVQSSKDPE 122

Query: 122 GLRIFYYLVQDLKCFVFSLISLHFKIKPI 150
           GLRIFYYLVQDLKCFVFSLISLHFKIKPI
Sbjct: 123 GLRIFYYLVQDLKCFVFSLISLHFKIKPI 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565403|gb|AAS20975.1| mago nashi-like protein [Hyacinthus orientalis]

 Score =  297 bits (761), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 142/150 (94%), Positives = 144/150 (96%)

Query: 1   MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAV 60
           MAG E  EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDT   +EVFLTPAV
Sbjct: 25  MAGNEQDEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTRSAREVFLTPAV 84

Query: 61  LRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDP 120
           LRECRRII+ESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDP
Sbjct: 85  LRECRRIIAESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDP 144

Query: 121 EGLRIFYYLVQDLKCFVFSLISLHFKIKPI 150
           EGLRIFYYLVQDLKCFVFSLISLHFKIKPI
Sbjct: 145 EGLRIFYYLVQDLKCFVFSLISLHFKIKPI 174

Source: Hyacinthus orientalis

Species: Hyacinthus orientalis

Genus: Hyacinthus

Family: Hyacinthaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726062|ref|NP_001236090.1| uncharacterized protein LOC100305742 [Glycine max] gi|255626499|gb|ACU13594.1| unknown [Glycine max]

 Score =  297 bits (761), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 142/147 (96%), Positives = 146/147 (99%)

Query: 4   EEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRE 63
           EE+GEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDT+IRKEV+LTPAVLRE
Sbjct: 5   EENGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPAVLRE 64

Query: 64  CRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGL 123
           CRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSS DPEGL
Sbjct: 65  CRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPEGL 124

Query: 124 RIFYYLVQDLKCFVFSLISLHFKIKPI 150
           RIFYYLVQDLKCFVFSL+SLHFKIKPI
Sbjct: 125 RIFYYLVQDLKCFVFSLMSLHFKIKPI 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146220096|gb|ABQ11262.1| mago nashi-like protein 1 [Physalis pubescens] gi|146220102|gb|ABQ11264.1| mago nashi-like protein 1 [Physalis pubescens]

 Score =  296 bits (759), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 140/147 (95%), Positives = 147/147 (100%)

Query: 4   EEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRE 63
           EE+GEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVL+E
Sbjct: 5   EENGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLKE 64

Query: 64  CRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGL 123
           CRRI+++SEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSL+DVQ+SKDPEGL
Sbjct: 65  CRRIVADSEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLMDVQTSKDPEGL 124

Query: 124 RIFYYLVQDLKCFVFSLISLHFKIKPI 150
           RIFYYLVQDLKCFVFSLISLHFKIKPI
Sbjct: 125 RIFYYLVQDLKCFVFSLISLHFKIKPI 151

Source: Physalis pubescens

Species: Physalis pubescens

Genus: Physalis

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|253684301|gb|ACT33369.1| mago nashi [Lycoris radiata]

 Score =  296 bits (759), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 142/143 (99%), Positives = 143/143 (100%)

Query: 8   EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRI 67
           EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRI
Sbjct: 5   EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRI 64

Query: 68  ISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFY 127
           I+ESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFY
Sbjct: 65  IAESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFY 124

Query: 128 YLVQDLKCFVFSLISLHFKIKPI 150
           YLVQDLKCFVFSLISLHFKIKPI
Sbjct: 125 YLVQDLKCFVFSLISLHFKIKPI 147

Source: Lycoris radiata

Species: Lycoris radiata

Genus: Lycoris

Family: Amaryllidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490798|gb|AFK33465.1| unknown [Lotus japonicus]

 Score =  296 bits (759), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 141/147 (95%), Positives = 145/147 (98%)

Query: 4   EEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRE 63
           EE+ EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDT+IRKEV+LTPAVLRE
Sbjct: 5   EENAEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPAVLRE 64

Query: 64  CRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGL 123
           CRRII+ESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSS DPEGL
Sbjct: 65  CRRIIAESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPEGL 124

Query: 124 RIFYYLVQDLKCFVFSLISLHFKIKPI 150
           RIFYYLVQDLKCFVFSLISLHFKIKPI
Sbjct: 125 RIFYYLVQDLKCFVFSLISLHFKIKPI 151

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482264|gb|ABK93059.1| unknown [Populus trichocarpa] gi|118489017|gb|ABK96316.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 141/147 (95%), Positives = 146/147 (99%)

Query: 4   EEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRE 63
           E++GEFYLRYYVGH+GKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVL+E
Sbjct: 6   EDNGEFYLRYYVGHRGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLKE 65

Query: 64  CRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGL 123
           CRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDV SS+DPEGL
Sbjct: 66  CRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVHSSQDPEGL 125

Query: 124 RIFYYLVQDLKCFVFSLISLHFKIKPI 150
           RIFYYLVQDLKCFVFSLISLHFKIKPI
Sbjct: 126 RIFYYLVQDLKCFVFSLISLHFKIKPI 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255627745|gb|ACU14217.1| unknown [Glycine max]

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 141/147 (95%), Positives = 146/147 (99%)

Query: 4   EEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRE 63
           E++GEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDT+IRKEV+LTPAVLRE
Sbjct: 5   EQNGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPAVLRE 64

Query: 64  CRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGL 123
           CRRII+ESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSS DPEGL
Sbjct: 65  CRRIIAESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPEGL 124

Query: 124 RIFYYLVQDLKCFVFSLISLHFKIKPI 150
           RIFYYLVQDLKCFVFSLISLHFKIKPI
Sbjct: 125 RIFYYLVQDLKCFVFSLISLHFKIKPI 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521507|gb|AFK48815.1| unknown [Lotus japonicus]

 Score =  296 bits (757), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 141/147 (95%), Positives = 145/147 (98%)

Query: 4   EEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRE 63
           EE+ EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDT+IRKEV+LTPAVLRE
Sbjct: 5   EENNEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPAVLRE 64

Query: 64  CRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGL 123
           CRRII+ESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSS DPEGL
Sbjct: 65  CRRIIAESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPEGL 124

Query: 124 RIFYYLVQDLKCFVFSLISLHFKIKPI 150
           RIFYYLVQDLKCFVFSLISLHFKIKPI
Sbjct: 125 RIFYYLVQDLKCFVFSLISLHFKIKPI 151

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
TAIR|locus:2205630	150	MAGO "MAGO NASHI" [Arabidopsis	1.0	1.0	0.9	1.8e-71
UNIPROTKB|Q3ZBV3	146	MAGOH "Protein mago nashi homo	0.966	0.993	0.806	2.3e-62
UNIPROTKB|P61326	146	MAGOH "Protein mago nashi homo	0.966	0.993	0.806	2.3e-62
UNIPROTKB|F1S766	146	MAGOH "Uncharacterized protein	0.966	0.993	0.806	2.3e-62
MGI|MGI:1330312	146	Magoh "mago-nashi homolog, pro	0.966	0.993	0.806	2.3e-62
RGD|1305174	146	Magoh "mago-nashi homolog, pro	0.966	0.993	0.806	2.3e-62
UNIPROTKB|F1NDG4	147	MAGOH "Protein mago nashi homo	0.953	0.972	0.818	3.8e-62
UNIPROTKB|P50594	146	MAGOH "Protein mago nashi homo	0.953	0.979	0.818	3.8e-62
UNIPROTKB|Q0VC92	148	MAGOHB "Protein mago nashi hom	0.953	0.966	0.818	3.8e-62
UNIPROTKB|Q96A72	148	MAGOHB "Protein mago nashi hom	0.953	0.966	0.818	3.8e-62

TAIR|locus:2205630 MAGO "MAGO NASHI" [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 135/150 (90%), Positives = 142/150 (94%)

Query:     1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAV 60
             MA EE  EFYLRYYVGHKGKFGHEFLEFEFR DGKLRYANNSNYKNDT+IRKEVFLTPAV
Sbjct:     1 MAAEEATEFYLRYYVGHKGKFGHEFLEFEFREDGKLRYANNSNYKNDTIIRKEVFLTPAV 60

Query:    61 LRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDP 120
             L+EC+RI+SESEI+KEDDNNWPEPDRVG+QELEIV+GNEHISF TSKIGSLVD QSS DP
Sbjct:    61 LKECKRIVSESEILKEDDNNWPEPDRVGKQELEIVLGNEHISFATSKIGSLVDCQSSNDP 120

Query:   121 EGLRIFYYLVQDLKCFVFSLISLHFKIKPI 150
             EGLRIFYYLVQDLKC VFSLISLHFKIKPI
Sbjct:   121 EGLRIFYYLVQDLKCLVFSLISLHFKIKPI 150

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0007530 "sex determination" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0010183 "pollen tube guidance" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0016607 "nuclear speck" evidence=IDA

GO:0035145 "exon-exon junction complex" evidence=IPI

GO:0010628 "positive regulation of gene expression" evidence=IEP

GO:0007067 "mitosis" evidence=RCA

UNIPROTKB|Q3ZBV3 MAGOH "Protein mago nashi homolog" [Bos taurus (taxid:9913)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 117/145 (80%), Positives = 129/145 (88%)

Query:     6 DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECR 65
             + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +
Sbjct:     2 ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELK 61

Query:    66 RIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRI 125
             RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+
Sbjct:    62 RIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRV 121

Query:   126 FYYLVQDLKCFVFSLISLHFKIKPI 150
             FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:   122 FYYLVQDLKCLVFSLIGLHFKIKPI 146

GO:0016607 "nuclear speck" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0035145 "exon-exon junction complex" evidence=IEA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|P61326 MAGOH "Protein mago nashi homolog" [Homo sapiens (taxid:9606)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 117/145 (80%), Positives = 129/145 (88%)

Query:     6 DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECR 65
             + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +
Sbjct:     2 ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELK 61

Query:    66 RIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRI 125
             RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+
Sbjct:    62 RIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRV 121

Query:   126 FYYLVQDLKCFVFSLISLHFKIKPI 150
             FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:   122 FYYLVQDLKCLVFSLIGLHFKIKPI 146

GO:0003723 "RNA binding" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005634 "nucleus" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0035145 "exon-exon junction complex" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IMP;TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006369 "termination of RNA polymerase II transcription" evidence=TAS

GO:0006406 "mRNA export from nucleus" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031124 "mRNA 3'-end processing" evidence=TAS

UNIPROTKB|F1S766 MAGOH "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 117/145 (80%), Positives = 129/145 (88%)

Query:     6 DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECR 65
             + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +
Sbjct:     2 ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELK 61

Query:    66 RIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRI 125
             RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+
Sbjct:    62 RIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRV 121

Query:   126 FYYLVQDLKCFVFSLISLHFKIKPI 150
             FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:   122 FYYLVQDLKCLVFSLIGLHFKIKPI 146

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0035145 "exon-exon junction complex" evidence=IEA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA

MGI|MGI:1330312 Magoh "mago-nashi homolog, proliferation-associated (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 117/145 (80%), Positives = 129/145 (88%)

Query:     6 DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECR 65
             + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +
Sbjct:     2 ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELK 61

Query:    66 RIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRI 125
             RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+
Sbjct:    62 RIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRV 121

Query:   126 FYYLVQDLKCFVFSLISLHFKIKPI 150
             FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:   122 FYYLVQDLKCLVFSLIGLHFKIKPI 146

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007292 "female gamete generation" evidence=NAS

GO:0008380 "RNA splicing" evidence=IEA

GO:0035145 "exon-exon junction complex" evidence=ISO

GO:0051028 "mRNA transport" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

RGD|1305174 Magoh "mago-nashi homolog, proliferation-associated (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 117/145 (80%), Positives = 129/145 (88%)

Query:     6 DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECR 65
             + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +
Sbjct:     2 ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELK 61

Query:    66 RIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRI 125
             RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+
Sbjct:    62 RIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRV 121

Query:   126 FYYLVQDLKCFVFSLISLHFKIKPI 150
             FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:   122 FYYLVQDLKCLVFSLIGLHFKIKPI 146

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA;ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0035145 "exon-exon junction complex" evidence=IEA;ISO

GO:0051028 "mRNA transport" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

UNIPROTKB|F1NDG4 MAGOH "Protein mago nashi homolog" [Gallus gallus (taxid:9031)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 117/143 (81%), Positives = 128/143 (89%)

Query:     8 EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRI 67
             +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +RI
Sbjct:     5 DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRI 64

Query:    68 ISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFY 127
             I +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+FY
Sbjct:    65 IDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFY 124

Query:   128 YLVQDLKCFVFSLISLHFKIKPI 150
             YLVQDLKC VFSLI LHFKIKPI
Sbjct:   125 YLVQDLKCLVFSLIGLHFKIKPI 147

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P50594 MAGOH "Protein mago nashi homolog" [Gallus gallus (taxid:9031)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 117/143 (81%), Positives = 128/143 (89%)

Query:     8 EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRI 67
             +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +RI
Sbjct:     4 DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRI 63

Query:    68 ISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFY 127
             I +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+FY
Sbjct:    64 IDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFY 123

Query:   128 YLVQDLKCFVFSLISLHFKIKPI 150
             YLVQDLKC VFSLI LHFKIKPI
Sbjct:   124 YLVQDLKCLVFSLIGLHFKIKPI 146

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q0VC92 MAGOHB "Protein mago nashi homolog 2" [Bos taurus (taxid:9913)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 117/143 (81%), Positives = 128/143 (89%)

Query:     8 EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRI 67
             +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +RI
Sbjct:     6 DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRI 65

Query:    68 ISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFY 127
             I +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+FY
Sbjct:    66 IDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFY 125

Query:   128 YLVQDLKCFVFSLISLHFKIKPI 150
             YLVQDLKC VFSLI LHFKIKPI
Sbjct:   126 YLVQDLKCLVFSLIGLHFKIKPI 148

GO:0005634 "nucleus" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q96A72 MAGOHB "Protein mago nashi homolog 2" [Homo sapiens (taxid:9606)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 117/143 (81%), Positives = 128/143 (89%)

Query:     8 EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRI 67
             +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +RI
Sbjct:     6 DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRI 65

Query:    68 ISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFY 127
             I +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+FY
Sbjct:    66 IDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFY 125

Query:   128 YLVQDLKCFVFSLISLHFKIKPI 150
             YLVQDLKC VFSLI LHFKIKPI
Sbjct:   126 YLVQDLKCLVFSLIGLHFKIKPI 148

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96A72	MGN2_HUMAN	No assigned EC number	0.8125	0.96	0.9729	yes	no
O43037	MGN_SCHPO	No assigned EC number	0.6041	0.96	0.9795	yes	no
P49029	MGN_CAEEL	No assigned EC number	0.7631	1.0	0.9868	yes	no
Q3ZBV3	MGN_BOVIN	No assigned EC number	0.8068	0.9666	0.9931	yes	no
P61326	MGN_HUMAN	No assigned EC number	0.8068	0.9666	0.9931	yes	no
P61327	MGN_MOUSE	No assigned EC number	0.8068	0.9666	0.9931	yes	no
B9ENE7	MGN_SALSA	No assigned EC number	0.8125	0.96	0.9795	N/A	no
Q27W02	MGN_RAT	No assigned EC number	0.8068	0.9666	0.9931	yes	no
Q55E21	MGN_DICDI	No assigned EC number	0.6923	0.9533	0.7258	yes	no
P49030	MGN_ORYSJ	No assigned EC number	0.9210	0.9933	0.9312	yes	no
Q9CQL1	MGN2_MOUSE	No assigned EC number	0.8181	0.9533	0.9794	yes	no
O42149	MGN_XENLA	No assigned EC number	0.8111	0.9533	0.9794	N/A	no
P50594	MGN_CHICK	No assigned EC number	0.8125	0.96	0.9863	yes	no
P49028	MGN_DROME	No assigned EC number	0.8321	0.9533	0.9727	yes	no
O65806	MGN_EUPLA	No assigned EC number	0.9324	0.9866	0.9932	N/A	no
O23676	MGN_ARATH	No assigned EC number	0.9	1.0	1.0	yes	no
Q566Y8	MGN_DANRE	No assigned EC number	0.8125	0.96	0.9795	yes	no
Q0VC92	MGN2_BOVIN	No assigned EC number	0.8125	0.96	0.9729	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
cd11295	143	cd11295, Mago_nashi, Mago nashi proteins, integral	1e-112
pfam02792	143	pfam02792, Mago_nashi, Mago nashi protein	1e-97

>gnl|CDD|199917 cd11295, Mago_nashi, Mago nashi proteins, integral members of the exon junction complex

 Score =  313 bits (804), Expect = e-112
 Identities = 125/143 (87%), Positives = 134/143 (93%)

Query: 8   EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRI 67
           +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE +++PAVL E +RI
Sbjct: 1   DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVSPAVLEELKRI 60

Query: 68  ISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFY 127
           I +SEI+KEDD  WPEPDRVGRQELEIVMG+EHISFTTSKIGSLVDVQ SKDPEGLR+FY
Sbjct: 61  IEDSEILKEDDAKWPEPDRVGRQELEIVMGDEHISFTTSKIGSLVDVQQSKDPEGLRVFY 120

Query: 128 YLVQDLKCFVFSLISLHFKIKPI 150
           YLVQDLKC VFSLI LHFKIKPI
Sbjct: 121 YLVQDLKCLVFSLIGLHFKIKPI 143

Members of this family, which was originally identified in Drosophila and called mago nashi, are integral members of the exon junction complex (EJC). The EJC is a multiprotein complex that is deposited on spliced mRNAs after intron removal at a conserved position upstream of the exon-exon junction, and transported to the cytoplasm where it has been shown to influence translation, surveillance, and localization of the spliced mRNA. It consists of four core proteins (eIF4AIII, Barentsz [Btz], Mago, and Y14), mRNA, and ATP and is supposed to be a binding platform for more peripherally and transiently associated factors along mRNA travel. Mago and Y14 form a stable heterodimer that stabilizes the complex by inhibiting eIF4AIII's ATPase activity. In humans, but not Drosophila, EJC is involved in nonsense-mediated mRNA decay (NMD) via binding to Upf3b, a central NMD effector. EJC is stripped off the mRNA during the first round of translation and then the complex components are transported back into the nucleus and recycled. The Mago-Y14 heterodimer has been shown to interact with the cytoplasmic protein PYM, an EJC disassembly factor, and specifically binds to the karyopherin nuclear receptor importin 13. Length = 143

>gnl|CDD|111665 pfam02792, Mago_nashi, Mago nashi protein

 Score =  277 bits (709), Expect = 1e-97
 Identities = 113/143 (79%), Positives = 128/143 (89%)

Query: 8   EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRI 67
           +FY+RYYVGHKGKFGHEFLEFEFR DG LRYANNSNYKNDT+IRKE+F++  VL+E +RI
Sbjct: 1   DFYVRYYVGHKGKFGHEFLEFEFRSDGLLRYANNSNYKNDTLIRKEMFVSELVLKEVKRI 60

Query: 68  ISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFY 127
           + +SEI+KEDD NWPEPD+ G+QELEI M NEHISF T KIGSL DVQ+S DPEGLR+FY
Sbjct: 61  VDDSEIIKEDDENWPEPDKDGKQELEIRMNNEHISFETCKIGSLADVQNSDDPEGLRVFY 120

Query: 128 YLVQDLKCFVFSLISLHFKIKPI 150
           YLVQDLKC VFSLISLHFKIKPI
Sbjct: 121 YLVQDLKCLVFSLISLHFKIKPI 143

This family was originally identified in Drosophila and called mago nashi, it is a strict maternal effect, grandchildless-like, gene. The human homologue has been shown to interact with an RNA binding protein. An RNAi knockout of the C. elegans homologue causes masculinization of the germ line (Mog phenotype) hermaphrodites, suggesting it is involved in hermaphrodite germ-line sex determination. Mago nashi has been found to be part of the exon-exon junction complex that binds 20 nucleotides upstream of exon-exon junctions. Length = 143

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
PF02792	143	Mago_nashi: Mago nashi protein; InterPro: IPR00402	100.0
KOG3392	147	consensus Exon-exon junction complex, Magoh compon	100.0

>PF02792 Mago_nashi: Mago nashi protein; InterPro: IPR004023 This family was originally identified in drosophila and called mago nashi, it is a strict maternal effect, grandchildless-like, gene []

Probab=100.00  E-value=5.2e-102  Score=606.89  Aligned_cols=143  Identities=88%  Similarity=1.443  Sum_probs=132.9

Q ss_pred             ceEEEEeecCCCccceeeEEEEEcCCCceEeeccCCCCCcceEEEEEeeCHHHHHHHHHHhhhcccccccCCCCCCCCCC
Q 031940            8 EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRV   87 (150)
Q Consensus         8 ~FYlRYY~Gh~GkfGHEFLEfEf~~dG~lRYaNNSnYKnd~~IrKe~~vs~~v~~E~krII~~SeI~kEdD~~WP~pd~~   87 (150)
                      +||||||+||+||||||||||||||||+||||||||||||+||||||+||++||+|+||||.+||||+|||++||+||++
T Consensus         1 ~fYlRYy~gH~GkfGhEfLEfEfr~dG~lRYaNnSnYknd~~IrKe~~vs~~vl~E~krII~~SeI~kEdD~~WP~pd~~   80 (143)
T PF02792_consen    1 DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDSMIRKEVYVSPAVLEELKRIIEDSEIMKEDDSKWPEPDRV   80 (143)
T ss_dssp             -EEEEEEEEEEETTEEEEEEEEEETTSEEEEEEEESCCCSEEEEEEEEE-HHHHHHHHHHHHHHTGGG--STTS--SBTT
T ss_pred             CeeEEEEeccCccccceEEEEEeccCCeEEEcccCCCCCcceeeeeeEecHHHHHHHHHHHHHhhccccccccCCCCCCc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEEECCeEEEEEecCeeeeeeccCCCCccchhhhhHHHHhHHHHHHHHhhhceeeecC
Q 031940           88 GRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI  150 (150)
Q Consensus        88 GrQELEI~~g~~HisF~tsKiGSl~dv~~S~DPeGLr~FyYLvqDLkclvfsLi~lHfkikpi  150 (150)
                      |||||||+|||+||||+|||||||+|||+|+||||||+||||||||||||||||+||||||||
T Consensus        81 GrQELEI~lg~~HisF~tsKigsl~dv~~S~DPeGLr~FyYLvqDLKclvfsLi~lHFkikpi  143 (143)
T PF02792_consen   81 GRQELEIVLGNEHISFTTSKIGSLSDVQNSKDPEGLRVFYYLVQDLKCLVFSLISLHFKIKPI  143 (143)
T ss_dssp             BEEEEEEEETTEEEEEEEC---SHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS-
T ss_pred             cceeEEEEECCEEEEEEecccccceeeccCCCccHHHHHHHHHHHHHHHHHHHHHheeeeccC
Confidence            999999999999999999999999999999999999999999999999999999999999998

The human homologue has been shown to interact with an RNA binding protein, ribonucleoprotein rbm8 (Q9Y5S9 from SWISSPROT) []. An RNAi knockout of the Caenorhabditis elegans homologue causes masculinization of the germ line (Mog phenotype) hermaphrodites, suggesting it is involved in hermaphrodite germ-line sex determination [] but the protein is also found in hermaphrodites and other organisms without a sexual differentiation.; GO: 0005634 nucleus; PDB: 2XB2_Y 2J0S_C 3EX7_A 2J0Q_F 1P27_C 2HYI_A 2X1G_B 1HL6_B 1RK8_B 1OO0_A ....

>KOG3392 consensus Exon-exon junction complex, Magoh component [RNA processing and modification]

Probab=100.00  E-value=3.3e-98  Score=581.97  Aligned_cols=146  Identities=84%  Similarity=1.381  Sum_probs=144.4

Q ss_pred             CCcceEEEEeecCCCccceeeEEEEEcCCCceEeeccCCCCCcceEEEEEeeCHHHHHHHHHHhhhcccccccCCCCCCC
Q 031940            5 EDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEP   84 (150)
Q Consensus         5 ~~~~FYlRYY~Gh~GkfGHEFLEfEf~~dG~lRYaNNSnYKnd~~IrKe~~vs~~v~~E~krII~~SeI~kEdD~~WP~p   84 (150)
                      ...+|||||||||+||||||||||||||||+||||||||||||+|||||++||++|++|+||||.|||||+|||++||+|
T Consensus         2 ~asdfy~ryyvghkgkfgheflefefr~dg~lryannsnykndt~irke~fv~e~vl~e~kriv~dsei~kedd~nwp~p   81 (147)
T KOG3392|consen    2 EASDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHESVLEELKRIIDDSEIMKEDDANWPPP   81 (147)
T ss_pred             cccceEEEEEeccCccccceeeEEEecCCCcEEeccCCCcccchhhhhhhhhhHHHHHHHHHHhhhhhhhhccccCCcCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEEEECCeEEEEEecCeeeeeeccCCCCccchhhhhHHHHhHHHHHHHHhhhceeeecC
Q 031940           85 DRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI  150 (150)
Q Consensus        85 d~~GrQELEI~~g~~HisF~tsKiGSl~dv~~S~DPeGLr~FyYLvqDLkclvfsLi~lHfkikpi  150 (150)
                      |++|||||||+|||+||||+|||||||+|||+|+||||||+||||||||||||||||+||||||||
T Consensus        82 d~~gkqelei~~~~ehisf~t~kigsladv~ns~dpeglr~fyylvqdlkclvfsli~lhfkikpi  147 (147)
T KOG3392|consen   82 DRVGRQELEIVIGDEHISFTTSKIGSLADVNNSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI  147 (147)
T ss_pred             CcccceeEEEEECCeEEEEEeccccceeecccCCCccceeeehhhHhhhHhHhhhheeeeEEeecC
Confidence            999999999999999999999999999999999999999999999999999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	150
2hyi_A	146	Structure Of The Human Exon Junction Complex With A		4e-67
1oo0_A	147	Crystal Structure Of The Drosophila Mago Nashi-Y14		8e-67
1hl6_B	149	A Novel Mode Of Rbd-Protein Recognition In The Y14-		9e-67
1p27_A	144	Crystal Structure Of The Human Y14MAGOH COMPLEX Len		1e-66

>pdb|2HYI|A Chain A, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 146

Iteration: 1
 Score =  249 bits (636), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 117/145 (80%), Positives = 129/145 (88%)
Query: 6   DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECR 65
           + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +
Sbjct: 2   ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELK 61
Query: 66  RIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRI 125
           RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+
Sbjct: 62  RIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRV 121
Query: 126 FYYLVQDLKCFVFSLISLHFKIKPI 150
           FYYLVQDLKC VFSLI LHFKIKPI
Sbjct: 122 FYYLVQDLKCLVFSLIGLHFKIKPI 146

>pdb|1OO0|A Chain A, Crystal Structure Of The Drosophila Mago Nashi-Y14 Complex Length = 147

Iteration: 1
 Score =  248 bits (633), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 119/143 (83%), Positives = 128/143 (89%)
Query: 8   EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRI 67
           +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE F+  +V+ E +RI
Sbjct: 5   DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEELKRI 64
Query: 68  ISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFY 127
           I +SEIM+EDD  WP PDRVGRQELEIV+G+EHISFTTSK GSLVDV  SKDPEGLR FY
Sbjct: 65  IIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLRCFY 124
Query: 128 YLVQDLKCFVFSLISLHFKIKPI 150
           YLVQDLKC VFSLI LHFKIKPI
Sbjct: 125 YLVQDLKCLVFSLIGLHFKIKPI 147

>pdb|1HL6|B Chain B, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago Complex Length = 149

Iteration: 1
 Score =  248 bits (633), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 119/143 (83%), Positives = 128/143 (89%)
Query: 8   EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRI 67
           +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE F+  +V+ E +RI
Sbjct: 5   DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEELKRI 64
Query: 68  ISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFY 127
           I +SEIM+EDD  WP PDRVGRQELEIV+G+EHISFTTSK GSLVDV  SKDPEGLR FY
Sbjct: 65  IIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLRCFY 124
Query: 128 YLVQDLKCFVFSLISLHFKIKPI 150
           YLVQDLKC VFSLI LHFKIKPI
Sbjct: 125 YLVQDLKCLVFSLIGLHFKIKPI 147

>pdb|1P27|A Chain A, Crystal Structure Of The Human Y14MAGOH COMPLEX Length = 144

Iteration: 1
 Score =  248 bits (632), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 116/144 (80%), Positives = 128/144 (88%)
Query: 6   DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECR 65
           + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +
Sbjct: 1   ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELK 60
Query: 66  RIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRI 125
           RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+
Sbjct: 61  RIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRV 120
Query: 126 FYYLVQDLKCFVFSLISLHFKIKP 149
           FYYLVQDLKC VFSLI LHFKIKP
Sbjct: 121 FYYLVQDLKCLVFSLIGLHFKIKP 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
1oo0_A	147	MAGO nashi protein; RNA recognition motif, splicin	2e-87
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B 2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A* 1p27_A Length = 147

 Score =  250 bits (640), Expect = 2e-87
 Identities = 119/146 (81%), Positives = 128/146 (87%)

Query: 5   EDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLREC 64
              +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE F+  +V+ E 
Sbjct: 2   STEDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEEL 61

Query: 65  RRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLR 124
           +RII +SEIM+EDD  WP PDRVGRQELEIV+G+EHISFTTSK GSLVDV  SKDPEGLR
Sbjct: 62  KRIIIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLR 121

Query: 125 IFYYLVQDLKCFVFSLISLHFKIKPI 150
            FYYLVQDLKC VFSLI LHFKIKPI
Sbjct: 122 CFYYLVQDLKCLVFSLIGLHFKIKPI 147

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 29  EFRPDGKLRYANNSNYKNDTMIRK-EVF---LTPAVLRECRRIISESEIMKEDDN----- 79
           E   DG   + N  +   D +    E     L PA  R+    +S   +     +     
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---VFPPSAHIPTIL 391

Query: 80  ---NWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQ-DLKC 135
               W +  +    ++ +V+ N+   +      SLV+    K P+   I    +  +LK 
Sbjct: 392 LSLIWFDVIK---SDVMVVV-NKLHKY------SLVE----KQPKESTISIPSIYLELKV 437

Query: 136 FVFSLISLHFKI 147
            + +  +LH  I
Sbjct: 438 KLENEYALHRSI 449

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
1oo0_A	147	MAGO nashi protein; RNA recognition motif, splicin	100.0

>1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B 2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A* 1p27_A

Probab=100.00  E-value=3.7e-102  Score=608.66  Aligned_cols=145  Identities=82%  Similarity=1.337  Sum_probs=143.2

Q ss_pred             CcceEEEEeecCCCccceeeEEEEEcCCCceEeeccCCCCCcceEEEEEeeCHHHHHHHHHHhhhcccccccCCCCCCCC
Q 031940            6 DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPD   85 (150)
Q Consensus         6 ~~~FYlRYY~Gh~GkfGHEFLEfEf~~dG~lRYaNNSnYKnd~~IrKe~~vs~~v~~E~krII~~SeI~kEdD~~WP~pd   85 (150)
                      +++||||||+||+||||||||||||||||+||||||||||||+||||||+||++||+|+||||.+|||++|||++||+||
T Consensus         3 ~~~fYlRYY~GH~GkfGhEfLEfEfr~dG~lrYaNnSnYknd~~IrKe~~vs~~v~~E~krII~~SeI~kEdD~~WP~pd   82 (147)
T 1oo0_A            3 TEDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEELKRIIIDSEIMQEDDLPWPPPD   82 (147)
T ss_dssp             -CCEEEEEEEEEEETTEEEEEEEEECTTSEEEEEEECCTTSSCCEEEEEEECHHHHHHHHHHHHHHTGGGCCCTTSCCCC
T ss_pred             CCcEEEEEEecccCcccceEEEEEecCCCeEEEeccCCCcCCeeEEEEEEecHHHHHHHHHHHHHhcccccccccCCCCC
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEECCeEEEEEecCeeeeeeccCCCCccchhhhhHHHHhHHHHHHHHhhhceeeecC
Q 031940           86 RVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI  150 (150)
Q Consensus        86 ~~GrQELEI~~g~~HisF~tsKiGSl~dv~~S~DPeGLr~FyYLvqDLkclvfsLi~lHfkikpi  150 (150)
                      ++|||||||+|||+||||+|||||||+|||+|+||+|||+||||||||||||||||+||||||||
T Consensus        83 ~~GrQELEI~~g~~HisF~tskigSl~dv~~S~DPeGLr~FyYLvqDLKclvfsLi~lHFkikpi  147 (147)
T 1oo0_A           83 RVGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLRCFYYLVQDLKCLVFSLIGLHFKIKPI  147 (147)
T ss_dssp             SSEEEEEEEEETTEEEEEEECCCCCHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             CcCceeEEEEECCEEEEEEecCcccHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHhheeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d1rk8b_	141	d.232.1.1 (B:) Mago nashi protein {Fruit fly (Dros	1e-105

>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 141

class: Alpha and beta proteins (a+b)
fold: Mago nashi protein
superfamily: Mago nashi protein
family: Mago nashi protein
domain: Mago nashi protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  293 bits (752), Expect = e-105
 Identities = 116/140 (82%), Positives = 125/140 (89%)

Query: 8   EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRI 67
           +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE F+  +V+ E +RI
Sbjct: 2   DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEELKRI 61

Query: 68  ISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFY 127
           I +SEIM+EDD  WP PDRVGRQELEIV+G+EHISFTTSK GSLVDV  SKDPEGLR FY
Sbjct: 62  IIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLRCFY 121

Query: 128 YLVQDLKCFVFSLISLHFKI 147
           YLVQDLKC VFSLI LHFKI
Sbjct: 122 YLVQDLKCLVFSLIGLHFKI 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d1rk8b_	141	Mago nashi protein {Fruit fly (Drosophila melanoga	100.0

>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Mago nashi protein
superfamily: Mago nashi protein
family: Mago nashi protein
domain: Mago nashi protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=3.3e-100  Score=592.00  Aligned_cols=141  Identities=82%  Similarity=1.340  Sum_probs=126.0

Q ss_pred             cceEEEEeecCCCccceeeEEEEEcCCCceEeeccCCCCCcceEEEEEeeCHHHHHHHHHHhhhcccccccCCCCCCCCC
Q 031940            7 GEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDR   86 (150)
Q Consensus         7 ~~FYlRYY~Gh~GkfGHEFLEfEf~~dG~lRYaNNSnYKnd~~IrKe~~vs~~v~~E~krII~~SeI~kEdD~~WP~pd~   86 (150)
                      ++|||||||||+||||||||||||||||+||||||||||||+||||||+||++||+|+||||.+||||+|||++||+||+
T Consensus         1 ~~FYlRYYvGH~GkfGhEfLEfEfr~dG~lrYaNnSnYknd~~IrKe~~vs~~v~~EikrII~~SeI~kedD~~WP~pdr   80 (141)
T d1rk8b_           1 EDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEELKRIIIDSEIMQEDDLPWPPPDR   80 (141)
T ss_dssp             CCEEEEEEE------CCCCEEEEECTTCEEEEEC--------CCEEEEEECHHHHHHHHHHHHHHTGGGCCCTTSCCCCS
T ss_pred             CceEEEEEecccCcccceEEEEEecCCCeeeeecccCccchhhhhhhheecHHHHHHHHHHHHHHhccccccccCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEEECCeEEEEEecCeeeeeeccCCCCccchhhhhHHHHhHHHHHHHHhhhceee
Q 031940           87 VGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKI  147 (150)
Q Consensus        87 ~GrQELEI~~g~~HisF~tsKiGSl~dv~~S~DPeGLr~FyYLvqDLkclvfsLi~lHfki  147 (150)
                      +|||||||+|||+||||+|||||||.|||+|+||+|||+||||||||||||||||+|||||
T Consensus        81 ~GrQELEI~~g~~HisF~TsKigSl~dv~~S~DPeGLr~FyylvqDlkclvfsLi~lHfkI  141 (141)
T d1rk8b_          81 VGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLRCFYYLVQDLKCLVFSLIGLHFKI  141 (141)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCCSHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCcEEEEEEECCEEEEEEecccccHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            9999999999999999999999999999999999999999999999999999999999997