Citrus Sinensis ID: 031946

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFTDDLYNLWLEKARELLSFSS
ccccccHHHHHHHcccHHHHHHHHHccccccccccccccEEEccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHHcccc
cccccccccHHHHcccHHHHHHHHHHHHHccccccccccEEEEcccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHHHHHccc
mlggggcdgairraaGPELLEACyrvpevgfgircptgearitpgfklpashvihtvgpiygvtinpeaSLRSAYKNSLSLAKAnniqyiafpaiscglycypheeAATIAISTVKEFANDFKEVHFVLFTDDLYNLWLEKARELLSFSS
mlggggcdgaiRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFTDDLYNLWLEKARELLSFSS
MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFTDDLYNLWLEKARELLSFSS
********GAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFTDDLYNLWLEKAREL*****
MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFTDDLYNLWLEKARELLSF**
MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFTDDLYNLWLEKARELLSFSS
*LGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFTDDLYNLWLEKARELLSF**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFTDDLYNLWLEKARELLSFSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query150 2.2.26 [Sep-21-2011]
Q87JZ5170 Macro domain-containing p yes no 0.913 0.805 0.514 2e-33
Q8PHB6179 Macro domain-containing p yes no 0.86 0.720 0.526 4e-31
Q8P5Z8179 Macro domain-containing p yes no 0.853 0.715 0.537 5e-31
Q8Y2K1171 Macro domain-containing p yes no 0.913 0.801 0.503 2e-30
Q8KAE4172 Macro domain-containing p yes no 0.826 0.720 0.541 5e-29
Q8EYT0175 Macro domain-containing p yes no 0.886 0.76 0.510 9e-29
D3RKJ0175 O-acetyl-ADP-ribose deace yes no 0.86 0.737 0.553 1e-28
B5XXK9175 O-acetyl-ADP-ribose deace yes no 0.86 0.737 0.553 1e-28
Q72M93175 Macro domain-containing p yes no 0.886 0.76 0.503 3e-28
Q8TQD0195 Macro domain-containing p yes no 0.82 0.630 0.515 9e-28
>sp|Q87JZ5|Y4103_VIBPA Macro domain-containing protein VPA0103 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VPA0103 PE=4 SV=1 Back     alignment and function desciption
 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/138 (51%), Positives = 94/138 (68%), Gaps = 1/138 (0%)

Query: 1   MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
           MLGGGG DGAI RAAGP L+ ACY V +V  GIRCP G+ARIT    L A +VIH VGPI
Sbjct: 27  MLGGGGVDGAIHRAAGPALINACYAVDDVD-GIRCPFGDARITEAGNLNARYVIHAVGPI 85

Query: 61  YGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN 120
           Y    +P+  L SAY+ SL LA AN+ Q +A PAISCG+Y YP +EAA +A++  +    
Sbjct: 86  YDKFADPKTVLESAYQRSLDLALANHCQSVALPAISCGVYGYPPQEAAEVAMAVCQRPEY 145

Query: 121 DFKEVHFVLFTDDLYNLW 138
              ++ F LF++++ ++W
Sbjct: 146 AALDMRFYLFSEEMLSIW 163

Vibrio parahaemolyticus (taxid: 670)
>sp|Q8PHB6|Y3343_XANAC Macro domain-containing protein XAC3343 OS=Xanthomonas axonopodis pv. citri (strain 306) GN=XAC3343 PE=4 SV=2 Back     alignment and function description
>sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=XCC3184 PE=4 SV=1 Back     alignment and function description
>sp|Q8Y2K1|Y334_RALSO Macro domain-containing protein RSc0334 OS=Ralstonia solanacearum (strain GMI1000) GN=RSc0334 PE=4 SV=1 Back     alignment and function description
>sp|Q8KAE4|Y2219_CHLTE Macro domain-containing protein CT2219 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=CT2219 PE=4 SV=1 Back     alignment and function description
>sp|Q8EYT0|Y4133_LEPIN Macro domain-containing protein LA_4133 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=LA_4133 PE=4 SV=1 Back     alignment and function description
>sp|D3RKJ0|YMDB_KLEVT O-acetyl-ADP-ribose deacetylase OS=Klebsiella variicola (strain At-22) GN=ymdB PE=3 SV=1 Back     alignment and function description
>sp|B5XXK9|YMDB_KLEP3 O-acetyl-ADP-ribose deacetylase OS=Klebsiella pneumoniae (strain 342) GN=ymdB PE=3 SV=1 Back     alignment and function description
>sp|Q72M93|Y3295_LEPIC Macro domain-containing protein LIC_13295 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=LIC_13295 PE=4 SV=1 Back     alignment and function description
>sp|Q8TQD0|Y1614_METAC Macro domain-containing protein MA_1614 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_1614 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
297736490190 unnamed protein product [Vitis vinifera] 0.98 0.773 0.782 5e-63
225448685231 PREDICTED: macro domain-containing prote 0.98 0.636 0.782 6e-63
224126573180 predicted protein [Populus trichocarpa] 0.98 0.816 0.775 1e-61
357436403233 Appr-1-p processing enzyme family protei 0.986 0.635 0.756 1e-61
255559685 269 Protein LRP16, putative [Ricinus communi 0.973 0.542 0.739 2e-61
255636888201 unknown [Glycine max] 0.973 0.726 0.746 2e-60
356552646236 PREDICTED: macro domain-containing prote 0.973 0.618 0.746 3e-60
449491648247 PREDICTED: macro domain-containing prote 0.973 0.591 0.732 2e-59
449457407247 PREDICTED: macro domain-containing prote 0.973 0.591 0.726 4e-59
297827693 256 hypothetical protein ARALYDRAFT_483117 [ 0.973 0.570 0.712 8e-59
>gi|297736490|emb|CBI25361.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/147 (78%), Positives = 128/147 (87%)

Query: 1   MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
           MLGGGG DGAI RAAGPEL+ ACY+VPEV  GIRCPTGEARIT GFKLPA+HVIHTVGPI
Sbjct: 43  MLGGGGADGAIHRAAGPELVAACYKVPEVRPGIRCPTGEARITQGFKLPAAHVIHTVGPI 102

Query: 61  YGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN 120
           Y V  NPEASL+SAY N LSLAK NN+QYIAFPAISCG++ YP++EAAT+AISTVKEF  
Sbjct: 103 YDVDSNPEASLKSAYANCLSLAKENNVQYIAFPAISCGVFGYPYDEAATVAISTVKEFGK 162

Query: 121 DFKEVHFVLFTDDLYNLWLEKARELLS 147
           D KEVHFVLF+DD+YN+WL KA ELL 
Sbjct: 163 DLKEVHFVLFSDDIYNVWLNKANELLQ 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225448685|ref|XP_002280352.1| PREDICTED: macro domain-containing protein VPA0103 [Vitis vinifera] gi|147769460|emb|CAN70345.1| hypothetical protein VITISV_012577 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224126573|ref|XP_002319871.1| predicted protein [Populus trichocarpa] gi|222858247|gb|EEE95794.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357436403|ref|XP_003588477.1| Appr-1-p processing enzyme family protein [Medicago truncatula] gi|355477525|gb|AES58728.1| Appr-1-p processing enzyme family protein [Medicago truncatula] gi|388499270|gb|AFK37701.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255559685|ref|XP_002520862.1| Protein LRP16, putative [Ricinus communis] gi|223539993|gb|EEF41571.1| Protein LRP16, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255636888|gb|ACU18777.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356552646|ref|XP_003544674.1| PREDICTED: macro domain-containing protein XCC3184-like [Glycine max] Back     alignment and taxonomy information
>gi|449491648|ref|XP_004158963.1| PREDICTED: macro domain-containing protein VPA0103-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449457407|ref|XP_004146440.1| PREDICTED: macro domain-containing protein VPA0103-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297827693|ref|XP_002881729.1| hypothetical protein ARALYDRAFT_483117 [Arabidopsis lyrata subsp. lyrata] gi|297327568|gb|EFH57988.1| hypothetical protein ARALYDRAFT_483117 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
TAIR|locus:2061923257 AT2G40600 "AT2G40600" [Arabido 0.973 0.568 0.705 3.7e-55
UNIPROTKB|Q74FT0173 ymdB "O-acetyl-ADP-ribose deac 0.826 0.716 0.496 2.2e-27
TIGR_CMR|GSU_0526173 GSU_0526 "conserved hypothetic 0.826 0.716 0.496 2.2e-27
UNIPROTKB|P0A8D6177 ymdB "O-acetyl-ADP-ribose deac 0.906 0.768 0.478 1.5e-26
UNIPROTKB|A1Z1Q3 448 MACROD2 "O-acetyl-ADP-ribose d 0.94 0.314 0.464 1.9e-26
UNIPROTKB|Q3AEI4181 CHY_0594 "Putative uncharacter 0.913 0.756 0.482 1.1e-25
TIGR_CMR|CHY_0594181 CHY_0594 "conserved hypothetic 0.913 0.756 0.482 1.1e-25
MGI|MGI:1920149 475 Macrod2 "MACRO domain containi 0.826 0.261 0.488 3.3e-25
RGD|1591318 531 Macrod2 "MACRO domain containi 0.826 0.233 0.488 7.3e-25
ZFIN|ZDB-GENE-040426-1490 452 macrod2 "MACRO domain containi 0.94 0.311 0.431 4.4e-24
TAIR|locus:2061923 AT2G40600 "AT2G40600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 103/146 (70%), Positives = 123/146 (84%)

Query:     1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
             MLGGGG DGAI RAAGP+L  ACY VPEV  G+RCPTGEARITPGF LPAS VIHTVGPI
Sbjct:   109 MLGGGGADGAIHRAAGPQLRAACYEVPEVRPGVRCPTGEARITPGFNLPASRVIHTVGPI 168

Query:    61 YGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN 120
             Y   +NP+ SL ++YKNSL +AK NNI+YIAFPAISCG+Y YP +EAA I IST+K+F+ 
Sbjct:   169 YDSDVNPQESLTNSYKNSLRVAKENNIKYIAFPAISCGIYGYPFDEAAAIGISTIKQFST 228

Query:   121 DFKEVHFVLFTDDLYNLWLEKARELL 146
             DFKEVHFVLF DD++++W+ KA+E+L
Sbjct:   229 DFKEVHFVLFADDIFSVWVNKAKEVL 254
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|Q74FT0 ymdB "O-acetyl-ADP-ribose deacetylase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0526 GSU_0526 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P0A8D6 ymdB "O-acetyl-ADP-ribose deacetylase, regulator of RNase III activity" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|A1Z1Q3 MACROD2 "O-acetyl-ADP-ribose deacetylase MACROD2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AEI4 CHY_0594 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0594 CHY_0594 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
MGI|MGI:1920149 Macrod2 "MACRO domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1591318 Macrod2 "MACRO domain containing 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1490 macrod2 "MACRO domain containing 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8P5Z8Y3184_XANCPNo assigned EC number0.53780.85330.7150yesno
Q8PHB6Y3343_XANACNo assigned EC number0.52630.860.7206yesno
Q8EYT0Y4133_LEPINNo assigned EC number0.51060.88660.76yesno
Q8KAE4Y2219_CHLTENo assigned EC number0.54190.82660.7209yesno
Q9ZBG3Y6450_STRCONo assigned EC number0.42640.90660.8047yesno
Q87JZ5Y4103_VIBPANo assigned EC number0.51440.91330.8058yesno
E1SDF1YMDB1_PANVC3, ., 5, ., 1, ., -0.40270.920.8070yesno
Q8Q0F9Y177_METMANo assigned EC number0.51090.84660.6791yesno
Q8RB30Y995_THETNNo assigned EC number0.45270.95330.8171yesno
Q8Y2K1Y334_RALSONo assigned EC number0.50340.91330.8011yesno
Q72M93Y3295_LEPICNo assigned EC number0.50350.88660.76yesno
B5XXK9YMDB_KLEP33, ., 5, ., 1, ., -0.55300.860.7371yesno
Q8TQD0Y1614_METACNo assigned EC number0.51510.820.6307yesno
D3RKJ0YMDB_KLEVT3, ., 5, ., 1, ., -0.55300.860.7371yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
cd02908165 cd02908, Macro_Appr_pase_like, Macro domain, Appr- 9e-65
PRK00431177 PRK00431, PRK00431, RNase III inhibitor; Provision 9e-56
pfam01661117 pfam01661, Macro, Macro domain 2e-45
COG2110179 COG2110, COG2110, Predicted phosphatase homologous 3e-41
PRK04143264 PRK04143, PRK04143, hypothetical protein; Provisio 2e-35
cd02907175 cd02907, Macro_Af1521_BAL_like, Macro domain, Af15 3e-35
cd02906147 cd02906, Macro_1, Macro domain, Unknown family 1 1e-30
smart00506133 smart00506, A1pp, Appr-1"-p processing enzyme 1e-27
cd02905140 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_lik 9e-27
cd02749147 cd02749, Macro, Macro domain, a high-affinity ADP- 5e-22
cd03330133 cd03330, Macro_2, Macro domain, Unknown family 2 5e-16
cd02903137 cd02903, Macro_BAL_like, Macro domain, BAL_like fa 1e-13
cd02904186 cd02904, Macro_H2A_like, Macro domain, Macro_H2A_l 3e-08
>gnl|CDD|239236 cd02908, Macro_Appr_pase_like, Macro domain, Appr-1"-pase_like family Back     alignment and domain information 
 Score =  194 bits (496), Expect = 9e-65
 Identities = 74/145 (51%), Positives = 97/145 (66%), Gaps = 10/145 (6%)

Query: 1   MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
           +LGGGG DGAI RAAGPELLE C  +        CPTGEA IT G+ LPA +VIHTVGP+
Sbjct: 25  LLGGGGVDGAIHRAAGPELLEECREL------RGCPTGEAVITSGYNLPAKYVIHTVGPV 78

Query: 61  YGVTINPEAS-LRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119
           +    + EA  L S Y+NSL LA+ N ++ IAFPAIS G+Y YP +EAA IA+ TV+EF 
Sbjct: 79  WRGGQHNEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFL 138

Query: 120 ---NDFKEVHFVLFTDDLYNLWLEK 141
              +  + V FV F+++ Y ++ + 
Sbjct: 139 EEHDAIERVIFVCFSEEDYEIYEKA 163

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate. Length = 165
>gnl|CDD|234759 PRK00431, PRK00431, RNase III inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|216634 pfam01661, Macro, Macro domain Back     alignment and domain information
>gnl|CDD|225021 COG2110, COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only] Back     alignment and domain information
>gnl|CDD|235225 PRK04143, PRK04143, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|239235 cd02907, Macro_Af1521_BAL_like, Macro domain, Af1521- and BAL-like family Back     alignment and domain information
>gnl|CDD|239234 cd02906, Macro_1, Macro domain, Unknown family 1 Back     alignment and domain information
>gnl|CDD|214701 smart00506, A1pp, Appr-1"-p processing enzyme Back     alignment and domain information
>gnl|CDD|239233 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_like family Back     alignment and domain information
>gnl|CDD|239150 cd02749, Macro, Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases) Back     alignment and domain information
>gnl|CDD|239446 cd03330, Macro_2, Macro domain, Unknown family 2 Back     alignment and domain information
>gnl|CDD|239231 cd02903, Macro_BAL_like, Macro domain, BAL_like family Back     alignment and domain information
>gnl|CDD|239232 cd02904, Macro_H2A_like, Macro domain, Macro_H2A_like family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 150
cd02904186 Macro_H2A_like Macro domain, Macro_H2A_like family 100.0
cd02908165 Macro_Appr_pase_like Macro domain, Appr-1"-pase_li 100.0
cd02907175 Macro_Af1521_BAL_like Macro domain, Af1521- and BA 100.0
PRK04143264 hypothetical protein; Provisional 100.0
PRK00431177 RNase III inhibitor; Provisional 100.0
cd02905140 Macro_GDAP2_like Macro domain, GDAP2_like family. 100.0
COG2110179 Predicted phosphatase homologous to the C-terminal 100.0
cd02906147 Macro_1 Macro domain, Unknown family 1. The macro 100.0
cd02903137 Macro_BAL_like Macro domain, BAL_like family. The 100.0
cd03330133 Macro_2 Macro domain, Unknown family 2. The macro 99.96
KOG2633200 consensus Hismacro and SEC14 domain-containing pro 99.96
cd02900186 Macro_Appr_pase Macro domain, Appr-1"-pase family. 99.96
PF01661118 Macro: Macro domain; InterPro: IPR002589 The Macro 99.96
PRK13341725 recombination factor protein RarA/unknown domain f 99.92
smart00506133 A1pp Appr-1"-p processing enzyme. Function determi 99.92
cd02749147 Macro Macro domain, a high-affinity ADP-ribose bin 99.91
cd02901140 Macro_Poa1p_like Macro domain, Poa1p_like family. 99.77
PHA02595154 tk.4 hypothetical protein; Provisional 99.47
PF14519280 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJ 98.97
TIGR02452266 conserved hypothetical protein TIGR02452. Members 98.52
COG4295285 Uncharacterized protein conserved in bacteria [Fun 97.64
cd03331152 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like fam 97.58
PF10154510 DUF2362: Uncharacterized conserved protein (DUF236 97.23
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family Back     alignment and domain information 
Probab=100.00  E-value=7.1e-43  Score=258.11  Aligned_cols=136  Identities=25%  Similarity=0.448  Sum_probs=126.2

Q ss_pred             CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCChhhhHHHHhhhhhh
Q 031946            1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS   80 (150)
Q Consensus         1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~   80 (150)
                      |.++|||++||+++||++|++||+++.+.  .+++++|++++|++|+||||||||+|+|.|..+ ++++.|++||++||+
T Consensus        45 L~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~~~iT~a~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~~L~  121 (186)
T cd02904          45 IDLKGEVGNALEKKGGKEFVEAVKELRKS--NGPLEIAGAAVSQAHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKNCLA  121 (186)
T ss_pred             cCCCCcHhHHHHHHcCHHHHHHHHHHHHh--cCCCCCCCEEEccCCCCCCCEEEEeCCCCCCCC-chHHHHHHHHHHHHH
Confidence            67899999999999999999999987632  358999999999999999999999999999664 457899999999999


Q ss_pred             hhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh-----chhhhhhhheechhhHHHH
Q 031946           81 LAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN-----DFKEVHFVLFTDDLYNLWL  139 (150)
Q Consensus        81 ~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~-----~l~~V~~v~~~~~~~~~f~  139 (150)
                      +|++++++|||||+||||++|||++++|++|++++++|++     ++++|+||+++++.+++|.
T Consensus       122 ~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~~~~~l~~I~fv~~~~~~~~~y~  185 (186)
T cd02904         122 AAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKQIYFVLFDSESIGIYV  185 (186)
T ss_pred             HHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccEEEEEECCHHHHHHhh
Confidence            9999999999999999999999999999999999999985     4789999999999999984

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family Back     alignment and domain information
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family Back     alignment and domain information
>PRK04143 hypothetical protein; Provisional Back     alignment and domain information
>PRK00431 RNase III inhibitor; Provisional Back     alignment and domain information
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family Back     alignment and domain information
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only] Back     alignment and domain information
>cd02906 Macro_1 Macro domain, Unknown family 1 Back     alignment and domain information
>cd02903 Macro_BAL_like Macro domain, BAL_like family Back     alignment and domain information
>cd03330 Macro_2 Macro domain, Unknown family 2 Back     alignment and domain information
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family Back     alignment and domain information
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>smart00506 A1pp Appr-1"-p processing enzyme Back     alignment and domain information
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases) Back     alignment and domain information
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family Back     alignment and domain information
>PHA02595 tk Back     alignment and domain information
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A Back     alignment and domain information
>TIGR02452 conserved hypothetical protein TIGR02452 Back     alignment and domain information
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily Back     alignment and domain information
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
1spv_A184 Crystal Structure Of The Putative Phosphatase Of Es 2e-27
2x47_A235 Crystal Structure Of Human Macrod1 Length = 235 1e-23
3q6z_A214 Human Parp14 (Artd8)-Macro Domain 1 In Complex With 8e-12
1zr3_A211 Crystal Structure Of The Macro-Domain Of Human Core 2e-10
1yd9_A193 1.6a Crystal Structure Of The Non-Histone Domain Of 2e-10
1zr5_A214 Crystal Structure Of The Macro-Domain Of Human Core 8e-10
2xd7_A193 Crystal Structure Of The Macro Domain Of Human Core 1e-08
2dx6_A159 Crystal Structure Of Conserved Hypothetical Protein 6e-08
3q71_A221 Human Parp14 (Artd8) - Macro Domain 2 In Complex Wi 1e-07
4etj_A167 Crystal Structure Of E6h Variant Of De Novo Designe 3e-06
4ess_A167 Crystal Structure Of E6dL155R VARIANT OF DE NOVO DE 3e-06
3v45_A167 Crystal Structure Of De Novo Designed Serine Hydrol 3e-06
4gvv_A167 Crystal Structure Of De Novo Design Serine Hydrolas 7e-06
1hjz_A192 Crystal Structure Of Af1521 Protein Containing A Ma 8e-06
2bfr_A192 The Macro Domain Is An Adp-Ribose Binding Module Le 9e-06
4etk_A167 Crystal Structure Of E6aL130DA155H VARIANT OF DE NO 9e-06
1vhu_A211 Crystal Structure Of A Putative Phosphoesterase Len 1e-05
4gvw_A199 Three-Dimensional Structure Of The De Novo Designed 1e-05
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of Escherichia Coli, Northeast Structural Genomoics Target Er58 Length = 184 Back     alignment and structure 
Iteration: 1

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/142 (47%), Positives = 88/142 (61%), Gaps = 6/142 (4%)
Query: 1   MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
           + GGGG DGAI RAAGP LL+AC +V +      CPTG A IT    LPA  V+HTVGP+
Sbjct: 28  LXGGGGVDGAIHRAAGPALLDACLKVRQQQG--DCPTGHAVITLAGDLPAKAVVHTVGPV 85
Query: 61  Y-GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119
           + G   N +  L+ AY NSL L  AN+   +AFPAIS G+Y YP   AA IA+ TV EF 
Sbjct: 86  WRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFI 145
Query: 120 NDF---KEVHFVLFTDDLYNLW 138
                 ++V+FV + ++  +L+
Sbjct: 146 TRHALPEQVYFVCYDEENAHLY 167
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1 Length = 235 Back     alignment and structure
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With Adenosine-5- Diphosphoribose Length = 214 Back     alignment and structure
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core Histone Variant Macroh2a1.1 (Form B) Length = 211 Back     alignment and structure
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The Histone Variant Macroh2a1.1. Length = 193 Back     alignment and structure
>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core Histone Variant Macroh2a1.2 Length = 214 Back     alignment and structure
>pdb|2XD7|A Chain A, Crystal Structure Of The Macro Domain Of Human Core Histone H2a Length = 193 Back     alignment and structure
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein, Ttha0132 From Thermus Thermophilus Hb8 Length = 159 Back     alignment and structure
>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With Adenosine-5- Diphosphoribose Length = 221 Back     alignment and structure
>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed Serine Hydrolase Osh55, Northeast Structural Genomics Consortium (Nesg) Target Or185 Length = 167 Back     alignment and structure
>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED SERINE Hydrolase Osh55, Northeast Structural Genomics Consortium (Nesg) Target Or187 Length = 167 Back     alignment and structure
>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase Osh55, Northeast Structural Genomics Consortium Target Or130 Length = 167 Back     alignment and structure
>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase Osh55.27, Northeast Structural Genomics Consortium (Nesg) Target Or246 Length = 167 Back     alignment and structure
>pdb|1HJZ|A Chain A, Crystal Structure Of Af1521 Protein Containing A Macroh2a Domain Length = 192 Back     alignment and structure
>pdb|2BFR|A Chain A, The Macro Domain Is An Adp-Ribose Binding Module Length = 192 Back     alignment and structure
>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO DESIGNED Serine Hydrolase, Northeast Structural Genomics Consortium (Nesg) Target Or186 Length = 167 Back     alignment and structure
>pdb|1VHU|A Chain A, Crystal Structure Of A Putative Phosphoesterase Length = 211 Back     alignment and structure
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine Hydrolase 2bfq_3, Northeast Structural Genomics Consortium (Nesg) Target Or248 Length = 199 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
1spv_A184 Putative polyprotein/phosphatase; structural genom 1e-67
2xd7_A193 Core histone macro-H2A.2; chromosomal protein, nuc 3e-67
1yd9_A193 Core histone macro-H2A.1; alpha-beta structure, A1 2e-66
3q6z_A214 Poly [ADP-ribose] polymerase 14; structural genomi 2e-66
2x47_A235 Macro domain-containing protein 1; signaling prote 5e-65
3q71_A221 Poly [ADP-ribose] polymerase 14; structural genomi 6e-64
2dx6_A159 Hypothetical protein TTHA0132; conserved hypotheti 7e-64
1vhu_A211 Hypothetical protein AF1521; structural genomics, 6e-63
3kh6_A199 Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3 1e-56
3gpg_A168 NSP3, non-structural protein 3; macro domain, X do 5e-56
3gqe_A168 Non-structural protein 3; macro domain, X domain, 5e-55
3ejf_A176 Non-structural protein 3; IBV, coronavirus, X-doma 8e-52
2acf_A182 Replicase polyprotein 1AB; ADRP domain, SARS NSP-3 2e-49
3eti_A168 X (ADRP) domain, macro domain of non-structural pr 9e-49
3ejg_A193 Non-structural protein 3; HCOV 229E, X-domain, mac 1e-48
2vri_A174 Non-structural protein 3; RNA replication, nucleot 3e-47
1njr_A284 32.1 kDa protein in ADH3-RCA1 intergenic region; s 3e-30
2jyc_A160 Uncharacterized protein C6ORF130; macro domain, A1 3e-07
2eee_A149 Uncharacterized protein C6ORF130; macro domain, A1 5e-06
3sig_A277 PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1 2e-04
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Length = 184 Back     alignment and structure
 Score =  202 bits (515), Expect = 1e-67
 Identities = 67/148 (45%), Positives = 90/148 (60%), Gaps = 6/148 (4%)

Query: 1   MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
           ++GGGG DGAI RAAGP LL+AC +V +      CPTG A IT    LPA  V+HTVGP+
Sbjct: 28  LMGGGGVDGAIHRAAGPALLDACLKVRQQQGD--CPTGHAVITLAGDLPAKAVVHTVGPV 85

Query: 61  Y-GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119
           + G   N +  L+ AY NSL L  AN+   +AFPAIS G+Y YP   AA IA+ TV EF 
Sbjct: 86  WRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFI 145

Query: 120 ND---FKEVHFVLFTDDLYNLWLEKARE 144
                 ++V+FV + ++  +L+     +
Sbjct: 146 TRHALPEQVYFVCYDEENAHLYERLLTQ 173
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Length = 193 Back     alignment and structure
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Length = 193 Back     alignment and structure
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Length = 214 Back     alignment and structure
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Length = 235 Back     alignment and structure
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Length = 221 Back     alignment and structure
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Length = 159 Back     alignment and structure
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Length = 211 Back     alignment and structure
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Length = 168 Back     alignment and structure
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Length = 168 Back     alignment and structure
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Length = 176 Back     alignment and structure
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Length = 182 Back     alignment and structure
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Length = 168 Back     alignment and structure
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Length = 193 Back     alignment and structure
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Length = 174 Back     alignment and structure
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Length = 284 Back     alignment and structure
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A* Length = 149 Back     alignment and structure
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A Length = 277 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query150
1spv_A184 Putative polyprotein/phosphatase; structural genom 100.0
3q6z_A214 Poly [ADP-ribose] polymerase 14; structural genomi 100.0
3q71_A221 Poly [ADP-ribose] polymerase 14; structural genomi 100.0
2x47_A235 Macro domain-containing protein 1; signaling prote 100.0
2xd7_A193 Core histone macro-H2A.2; chromosomal protein, nuc 100.0
1yd9_A193 Core histone macro-H2A.1; alpha-beta structure, A1 100.0
4abl_A183 Poly [ADP-ribose] polymerase 14; transferase, PARP 100.0
2dx6_A159 Hypothetical protein TTHA0132; conserved hypotheti 100.0
3kh6_A199 Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3 100.0
3eti_A168 X (ADRP) domain, macro domain of non-structural pr 100.0
1vhu_A211 Hypothetical protein AF1521; structural genomics, 100.0
3gpg_A168 NSP3, non-structural protein 3; macro domain, X do 100.0
2acf_A182 Replicase polyprotein 1AB; ADRP domain, SARS NSP-3 100.0
3gqe_A168 Non-structural protein 3; macro domain, X domain, 100.0
3ejg_A193 Non-structural protein 3; HCOV 229E, X-domain, mac 100.0
3ejf_A176 Non-structural protein 3; IBV, coronavirus, X-doma 100.0
2vri_A174 Non-structural protein 3; RNA replication, nucleot 100.0
1njr_A284 32.1 kDa protein in ADH3-RCA1 intergenic region; s 99.98
4gua_A 670 Non-structural polyprotein; viral precursor polypr 99.96
2eee_A149 Uncharacterized protein C6ORF130; macro domain, A1 99.89
2jyc_A160 Uncharacterized protein C6ORF130; macro domain, A1 99.88
2fg1_A158 Conserved hypothetical protein BT1257; structural 99.85
3sig_A277 PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1 99.4
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Back     alignment and structure
Probab=100.00  E-value=6.5e-43  Score=258.14  Aligned_cols=146  Identities=45%  Similarity=0.690  Sum_probs=134.2

Q ss_pred             CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCC-ChhhhHHHHhhhhh
Q 031946            1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTI-NPEASLRSAYKNSL   79 (150)
Q Consensus         1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L   79 (150)
                      |.+||||++||++++|+++++||+++++  +.+++++|++++|++++|+||||||+|+|.|+++. .+.+.|++||++||
T Consensus        28 l~~ggGv~~aI~~aaG~~l~~e~~~~~~--~~g~~~~G~a~iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~L~~~y~~~L  105 (184)
T 1spv_A           28 LMGGGGVDGAIHRAAGPALLDACLKVRQ--QQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSL  105 (184)
T ss_dssp             CSCCSHHHHHHHHHHCHHHHHHHHHHHH--HHCSCCTTCEEEECCTTSSSSEEEEECCCCCSSSSSSHHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHhCHHHHHHHHHHHH--hcCCCCCCCEEEeeCCCCCCCEEEEEcCCcccCCCcchHHHHHHHHHHHH
Confidence            6789999999999999999999999864  23589999999999999999999999999998754 46789999999999


Q ss_pred             hhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh---chhhhhhhheechhhHHHHHHHHhhccc
Q 031946           80 SLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN---DFKEVHFVLFTDDLYNLWLEKARELLSF  148 (150)
Q Consensus        80 ~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~---~l~~V~~v~~~~~~~~~f~~~~~~~f~~  148 (150)
                      +.|++++++|||||+||||++|+|++++|++|++++++|++   ++++|+||+++++++++|++.|+.+||.
T Consensus       106 ~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~~~~V~~v~~~~~~~~~~~~~l~~~~~~  177 (184)
T 1spv_A          106 RLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQGDE  177 (184)
T ss_dssp             HHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCCSSSEEEEEESSHHHHHHHHHHHHCC---
T ss_pred             HHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999999999999999999999986   5789999999999999999999999986
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Back     alignment and structure
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Back     alignment and structure
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Back     alignment and structure
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Back     alignment and structure
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Back     alignment and structure
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A Back     alignment and structure
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Back     alignment and structure
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Back     alignment and structure
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Back     alignment and structure
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Back     alignment and structure
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Back     alignment and structure
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Back     alignment and structure
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Back     alignment and structure
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Back     alignment and structure
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Back     alignment and structure
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Back     alignment and structure
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus} Back     alignment and structure
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A* Back     alignment and structure
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A Back     alignment and structure
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 150
d1yd9a1188 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Ratt 3e-37
d1vhua_192 c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeo 2e-34
d1spva_172 c.50.1.2 (A:) Hypothetical protein YmbD {Escherich 6e-33
d1njra_264 c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker' 2e-31
d2acfa1168 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SA 4e-27
d2fg1a1154 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Ba 6e-15
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 188 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  123 bits (310), Expect = 3e-37
 Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 8/152 (5%)

Query: 1   MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
              GG     + +  G E +EA   + +           A ++ G  LPA  VIH   P+
Sbjct: 39  FYIGGEVGSTLEKKGGKEFVEAVLELRKKNG--PLEVAGAAVSAGHGLPAKFVIHCNSPV 96

Query: 61  YGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF-- 118
           +G     E  L    KN L+LA    ++ IAFP+I  G   +P + AA + +  +  +  
Sbjct: 97  WGSDKCEEL-LEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFV 155

Query: 119 ---ANDFKEVHFVLFTDDLYNLWLEKARELLS 147
              ++  K V+FVLF  +   +++++  +L +
Sbjct: 156 STMSSSIKTVYFVLFDSESIGIYVQEMAKLDA 187
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 192 Back     information, alignment and structure
>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Length = 172 Back     information, alignment and structure
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 264 Back     information, alignment and structure
>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Length = 168 Back     information, alignment and structure
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 154 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query150
d1yd9a1188 Histone macro-H2a1.1 {Rat (Rattus norvegicus) [Tax 100.0
d1spva_172 Hypothetical protein YmbD {Escherichia coli [TaxId 100.0
d1vhua_192 Hypothetical protein AF1521 {Archaeon Archaeoglobu 100.0
d2acfa1168 Replicase polyprotein 1ab {SARS coronavirus [TaxId 99.97
d1njra_264 Hypothetical protein Ymr087W {Baker's yeast (Sacch 99.95
d2fg1a1154 Hypothetical protein BT1257 {Bacteroides thetaiota 99.75
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.9e-40  Score=240.84  Aligned_cols=144  Identities=27%  Similarity=0.487  Sum_probs=132.8

Q ss_pred             CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCChhhhHHHHhhhhhh
Q 031946            1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS   80 (150)
Q Consensus         1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~   80 (150)
                      |.++||++++|++++|++|++||+++.+.  .+++++|++++|++|+|+||||||+|+|.|+.+ ++.+.|++||++||+
T Consensus        39 l~~~~gv~~ai~~~~G~~l~~e~~~~~~~--~~~~~~g~~~vT~~~~L~~k~IiH~v~P~~~~~-~~~~~L~~~~~~~L~  115 (188)
T d1yd9a1          39 FYIGGEVGSTLEKKGGKEFVEAVLELRKK--NGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGSD-KCEELLEKTVKNCLA  115 (188)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHHHHH--HCSCCTTCEEEEECTTSSSSEEEEECCCCTTST-THHHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHh--ccccCCCCeeecccCCCCceEEeeeccccCCCc-chHHHHHHHHHHHHH
Confidence            46799999999999999999999987643  458999999999999999999999999999875 466899999999999


Q ss_pred             hhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh-----chhhhhhhheechhhHHHHHHHHhhcc
Q 031946           81 LAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN-----DFKEVHFVLFTDDLYNLWLEKARELLS  147 (150)
Q Consensus        81 ~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~-----~l~~V~~v~~~~~~~~~f~~~~~~~f~  147 (150)
                      .|++++++|||||+||||.+|+|++++|++|++++++|+.     ++++|+||+++++++++|++.|.+...
T Consensus       116 ~a~~~~~~SIafP~igtG~~g~p~~~~a~~~~~ai~~fl~~~~~~~l~~V~~v~~~~~~~~~f~~~l~ki~~  187 (188)
T d1yd9a1         116 LADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDA  187 (188)
T ss_dssp             HHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTCTTCCCCEEEEECCSHHHHHHHHHHHTTTTC
T ss_pred             HHHHcCCCeEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccEEEEEeCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999974     478899999999999999999988653
>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Back     information, alignment and structure
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure