Citrus Sinensis ID: 031974

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR
Secondary Structure (PSIPRED)
ccccccEEEEEEEEEccEEEEcccccEEEcccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEcccccccEEEEEEEEEccccEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEcccEEEccccccEEcccccEEEEEEEcccccccHHHHHHccccccccccccccccccHHHcccccccccHHHHHHHccccccccccccccccccEEEEHHHHHccccccEEEEEEEEHHHccEEEEEEEEccccc
Coil and Loop (DISEMBL)
mkvlpsgvYQYRFLVDGLwkyapdlpstqdddgnvynildlqeyvpddlesissfeppqspetsynnlqltaedfakepplvpphlqmtllnvpasymeippplsrpqhvvLNHLymqkgksgpsvvalGSTHRFLAKYVTVVLYKSMQR
Flexible Loop (DISEMBL)
MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR
Low Complexity Region (SEG)
MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR
Disordered region (IsUnstruct)
*****SGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVP**************************************HLQMTLLNVPASYMEIP**L*RPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK****
Disordered Region (DISOPRED)
*KVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPD*********************************************************SRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQ*
Disordered Region (DISEMBL)
MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR
Disordered Region (DISPRO)
MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSM**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
Q9SCY5	289	SNF1-related protein kina	yes	no	1.0	0.519	0.78	2e-66
Q84VQ1	283	SNF1-related protein kina	no	no	0.96	0.508	0.527	2e-36
Q9ZUU8	114	SNF1-related protein kina	no	no	0.673	0.885	0.514	7e-20
Q9QZH4	271	5'-AMP-activated protein	yes	no	0.92	0.509	0.348	7e-17
Q6PAM0	271	5'-AMP-activated protein	yes	no	0.92	0.509	0.348	1e-16
O43741	272	5'-AMP-activated protein	yes	no	0.92	0.507	0.348	1e-16
P80386	270	5'-AMP-activated protein	no	no	0.94	0.522	0.359	7e-16
Q9R078	270	5'-AMP-activated protein	no	no	0.94	0.522	0.359	8e-16
Q5BIS9	270	5'-AMP-activated protein	no	no	0.94	0.522	0.352	1e-15
Q9Y478	270	5'-AMP-activated protein	no	no	0.94	0.522	0.352	1e-15

>sp|Q9SCY5|KINB2_ARATH SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1

 Score =  251 bits (640), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 117/150 (78%), Positives = 137/150 (91%)

Query: 1   MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQS 60
           MKVLPSGVY+YRF+VDG W++AP+LP  +DD GN +NILDLQ+YVP+D++SIS FEPPQS
Sbjct: 140 MKVLPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNILDLQDYVPEDIQSISGFEPPQS 199

Query: 61  PETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKG 120
           PE SY+NL L AED++KEPP+VPPHLQMTLLN+PA+  +IP PL RPQHV+LNHLYMQKG
Sbjct: 200 PENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRPQHVILNHLYMQKG 259

Query: 121 KSGPSVVALGSTHRFLAKYVTVVLYKSMQR 150
           KSGPSVVALGSTHRFLAKYVTVVLYKS+QR
Sbjct: 260 KSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84VQ1|KINB1_ARATH SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/148 (52%), Positives = 101/148 (68%), Gaps = 4/148 (2%)

Query: 3   VLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPE 62
           VLPSG+Y Y+ +VDG  KY PDLP   D+ GNV NILD+  +VP++ ESI  FE P SP+
Sbjct: 140 VLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVHNFVPENPESIVEFEAPPSPD 199

Query: 63  TSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKS 122
            SY      AED+AKEP  VPP L +TLL       E     ++PQHVVLNH+++++G +
Sbjct: 200 HSYGQTLPAAEDYAKEPLAVPPQLHLTLLGT----TEETAIATKPQHVVLNHVFIEQGWT 255

Query: 123 GPSVVALGSTHRFLAKYVTVVLYKSMQR 150
             S+VALG THRF +KY+TVVLYK + R
Sbjct: 256 PQSIVALGLTHRFESKYITVVLYKPLTR 283

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUU8|KINB3_ARATH SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana GN=KINB3 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 72/107 (67%), Gaps = 6/107 (5%)

Query: 46  PDDLE--SISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPP 103
           PDD E  ++  FE P SP +SYNN+  + ED  ++PP VPPHLQ +LL    S ME+   
Sbjct: 6   PDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGS-MEL--- 61

Query: 104 LSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR 150
              PQ+VVLNHLY++   +  SVVALG +HRF  K+VTVV+YK +QR
Sbjct: 62  AYAPQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQR 108

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 20/158 (12%)

Query: 4   LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSF--EPPQSP 61
           LP G +QY+F VDG W + P  P      G + N++ +++    D E   +   +  +S 
Sbjct: 117 LPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKK---SDFEVFDALKLDSMESS 173

Query: 62  ETSYNNLQ-------------LTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQ 108
           ETS  +L                +E+  K PP++PPHL   +LN   +    P  L  P 
Sbjct: 174 ETSCRDLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPN 233

Query: 109 HVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
           HV+LNHLY    K   SV+ L +THR+  KYVT +LYK
Sbjct: 234 HVMLNHLYALSTKD--SVMVLSATHRYKKKYVTTLLYK 269

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 20/158 (12%)

Query: 4   LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSF--EPPQSP 61
           LP G +QY+F VDG W + P  P      G + N++ +++    D E   +   +  +S 
Sbjct: 117 LPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKK---SDFEVFDALKLDSMESS 173

Query: 62  ETSYNNLQ-------------LTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQ 108
           ETS  +L                +E+  K PP++PPHL   +LN   +    P  L  P 
Sbjct: 174 ETSCRDLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPN 233

Query: 109 HVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
           HV+LNHLY    K   SV+ L +THR+  KYVT +LYK
Sbjct: 234 HVMLNHLYALSIKD--SVMVLSATHRYKKKYVTTLLYK 269

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Mus musculus (taxid: 10090)

>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 20/158 (12%)

Query: 4   LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSF--EPPQSP 61
           LP G +QY+F VDG W + P  P      G + N++ +++    D E   +   +  +S 
Sbjct: 118 LPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKK---SDFEVFDALKLDSMESS 174

Query: 62  ETSYNNLQ-------------LTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQ 108
           ETS  +L                +E+  K PP++PPHL   +LN   +    P  L  P 
Sbjct: 175 ETSCRDLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPN 234

Query: 109 HVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
           HV+LNHLY    K   SV+ L +THR+  KYVT +LYK
Sbjct: 235 HVMLNHLYALSIKD--SVMVLSATHRYKKKYVTTLLYK 270

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4

 Score = 82.8 bits (203), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 75/153 (49%), Gaps = 12/153 (7%)

Query: 4   LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE--------YVPDDLESISSF 55
           LP G +QY+F VDG W + P  P      G V NI+ +++         + D  +     
Sbjct: 118 LPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS 177

Query: 56  EPPQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLN 113
           E   SP   Y+     +  E+  K PP++PPHL   +LN        P  L  P HV+LN
Sbjct: 178 ELSSSPPGPYHQEPYISKPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 237

Query: 114 HLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
           HLY    K G  V+ L +THR+  KYVT +LYK
Sbjct: 238 HLYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 75/153 (49%), Gaps = 12/153 (7%)

Query: 4   LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE--------YVPDDLESISSF 55
           LP G +QY+F VDG W + P  P      G V NI+ +++         + D  +     
Sbjct: 118 LPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS 177

Query: 56  EPPQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLN 113
           E   SP   Y+     +  E+  K PP++PPHL   +LN        P  L  P HV+LN
Sbjct: 178 ELSSSPPGPYHQEPYMSKPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 237

Query: 114 HLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
           HLY    K G  V+ L +THR+  KYVT +LYK
Sbjct: 238 HLYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Mus musculus (taxid: 10090)

>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus GN=PRKAB1 PE=2 SV=3

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 75/153 (49%), Gaps = 12/153 (7%)

Query: 4   LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE--------YVPDDLESISSF 55
           LP G +QY+F VDG W + P  P      G V N++ +++         + D  +     
Sbjct: 118 LPEGEHQYKFFVDGQWTHDPSEPVVTSQLGTVNNVIQVKKTDFEVFDALMVDSQKCSDVS 177

Query: 56  EPPQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLN 113
           E   SP   Y+     +  E+  K PP++PPHL   +LN        P  L  P HV+LN
Sbjct: 178 ELSSSPPGPYHQEPYISKPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 237

Query: 114 HLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
           HLY    K G  V+ L +THR+  KYVT +LYK
Sbjct: 238 HLYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Bos taurus (taxid: 9913)

>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 74/153 (48%), Gaps = 12/153 (7%)

Query: 4   LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE--------YVPDDLESISSF 55
           LP G +QY+F VDG W + P  P      G V NI+ +++         + D  +     
Sbjct: 118 LPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS 177

Query: 56  EPPQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLN 113
           E   SP   Y+        E+  + PP++PPHL   +LN        P  L  P HV+LN
Sbjct: 178 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 237

Query: 114 HLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
           HLY    K G  V+ L +THR+  KYVT +LYK
Sbjct: 238 HLYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
224137216	261	predicted protein [Populus trichocarpa]	1.0	0.574	0.846	5e-70
147768424	260	hypothetical protein VITISV_040057 [Viti	1.0	0.576	0.833	5e-69
359496111	301	PREDICTED: SNF1-related protein kinase r	1.0	0.498	0.833	8e-69
297735878	263	unnamed protein product [Vitis vinifera]	1.0	0.570	0.833	1e-68
255563760	307	snf1-kinase beta subunit, plants, putati	1.0	0.488	0.826	2e-68
224086343	293	predicted protein [Populus trichocarpa]	1.0	0.511	0.806	2e-67
356555761	292	PREDICTED: SNF1-related protein kinase r	1.0	0.513	0.786	2e-65
356532768	303	PREDICTED: SNF1-related protein kinase r	1.0	0.495	0.786	4e-65
449443686	254	PREDICTED: SNF1-related protein kinase r	1.0	0.590	0.786	4e-65
449518079	306	PREDICTED: SNF1-related protein kinase r	1.0	0.490	0.786	4e-65

>gi|224137216|ref|XP_002322502.1| predicted protein [Populus trichocarpa] gi|222867132|gb|EEF04263.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (686), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 127/150 (84%), Positives = 140/150 (93%)

Query: 1   MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQS 60
           MKVLPSGVYQYRF+VDG W+YAPDLP  +DD GN YN LDLQ++VP+DLESIS FEPP S
Sbjct: 112 MKVLPSGVYQYRFIVDGQWRYAPDLPWAKDDSGNAYNTLDLQDFVPEDLESISGFEPPHS 171

Query: 61  PETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKG 120
           PE+SY+NLQL+ EDFAKEPP+VPPHLQMTLLNVP+S MEIPPPLSRPQHVVLNHLYMQKG
Sbjct: 172 PESSYSNLQLSNEDFAKEPPMVPPHLQMTLLNVPSSCMEIPPPLSRPQHVVLNHLYMQKG 231

Query: 121 KSGPSVVALGSTHRFLAKYVTVVLYKSMQR 150
           KSGP+VVALGSTHRFLAKYVTVVLYKS+QR
Sbjct: 232 KSGPAVVALGSTHRFLAKYVTVVLYKSLQR 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768424|emb|CAN69257.1| hypothetical protein VITISV_040057 [Vitis vinifera]

 Score =  265 bits (677), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 125/150 (83%), Positives = 139/150 (92%)

Query: 1   MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQS 60
           MKVLPSGVYQYRF+VDG W+Y PD+P  QDD GN YNILDLQ+YVP+DLESIS FEPPQS
Sbjct: 111 MKVLPSGVYQYRFIVDGQWRYIPDMPWAQDDAGNAYNILDLQDYVPEDLESISGFEPPQS 170

Query: 61  PETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKG 120
           P++SYNNL+L +EDFAKEPPLVPPHLQMTLLNVP+S +EIPPP+ RPQHVVLNHLYMQKG
Sbjct: 171 PDSSYNNLELGSEDFAKEPPLVPPHLQMTLLNVPSSAVEIPPPMPRPQHVVLNHLYMQKG 230

Query: 121 KSGPSVVALGSTHRFLAKYVTVVLYKSMQR 150
           KSGPSVVALGST+RF AKYVTVVLYKS+QR
Sbjct: 231 KSGPSVVALGSTNRFRAKYVTVVLYKSLQR 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496111|ref|XP_002270146.2| PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Vitis vinifera]

 Score =  264 bits (675), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 125/150 (83%), Positives = 139/150 (92%)

Query: 1   MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQS 60
           MKVLPSGVYQYRF+VDG W+Y PD+P  QDD GN YNILDLQ+YVP+DLESIS FEPPQS
Sbjct: 152 MKVLPSGVYQYRFIVDGQWRYIPDMPWAQDDAGNAYNILDLQDYVPEDLESISGFEPPQS 211

Query: 61  PETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKG 120
           P++SYNNL+L +EDFAKEPPLVPPHLQMTLLNVP+S +EIPPP+ RPQHVVLNHLYMQKG
Sbjct: 212 PDSSYNNLELGSEDFAKEPPLVPPHLQMTLLNVPSSAVEIPPPMPRPQHVVLNHLYMQKG 271

Query: 121 KSGPSVVALGSTHRFLAKYVTVVLYKSMQR 150
           KSGPSVVALGST+RF AKYVTVVLYKS+QR
Sbjct: 272 KSGPSVVALGSTNRFRAKYVTVVLYKSLQR 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735878|emb|CBI18637.3| unnamed protein product [Vitis vinifera]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 125/150 (83%), Positives = 139/150 (92%)

Query: 1   MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQS 60
           MKVLPSGVYQYRF+VDG W+Y PD+P  QDD GN YNILDLQ+YVP+DLESIS FEPPQS
Sbjct: 114 MKVLPSGVYQYRFIVDGQWRYIPDMPWAQDDAGNAYNILDLQDYVPEDLESISGFEPPQS 173

Query: 61  PETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKG 120
           P++SYNNL+L +EDFAKEPPLVPPHLQMTLLNVP+S +EIPPP+ RPQHVVLNHLYMQKG
Sbjct: 174 PDSSYNNLELGSEDFAKEPPLVPPHLQMTLLNVPSSAVEIPPPMPRPQHVVLNHLYMQKG 233

Query: 121 KSGPSVVALGSTHRFLAKYVTVVLYKSMQR 150
           KSGPSVVALGST+RF AKYVTVVLYKS+QR
Sbjct: 234 KSGPSVVALGSTNRFRAKYVTVVLYKSLQR 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563760|ref|XP_002522881.1| snf1-kinase beta subunit, plants, putative [Ricinus communis] gi|223537866|gb|EEF39481.1| snf1-kinase beta subunit, plants, putative [Ricinus communis]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/150 (82%), Positives = 139/150 (92%)

Query: 1   MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQS 60
           MKVLPSGVYQYRF++DG W+Y PDLP  QDD GN YNILDLQEYVP+DLESISSFEPPQS
Sbjct: 158 MKVLPSGVYQYRFIIDGQWRYIPDLPWAQDDTGNAYNILDLQEYVPEDLESISSFEPPQS 217

Query: 61  PETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKG 120
           PE+SY+NLQL  ++FAKEPP VPPHLQMTLLN+P+SYME+P PLSRPQHVVLNHLY+QKG
Sbjct: 218 PESSYSNLQLGNDEFAKEPPFVPPHLQMTLLNMPSSYMEMPTPLSRPQHVVLNHLYIQKG 277

Query: 121 KSGPSVVALGSTHRFLAKYVTVVLYKSMQR 150
           K GP+VVALGSTHRFL+KYVTVVLYKS+QR
Sbjct: 278 KGGPAVVALGSTHRFLSKYVTVVLYKSLQR 307

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086343|ref|XP_002307855.1| predicted protein [Populus trichocarpa] gi|222853831|gb|EEE91378.1| predicted protein [Populus trichocarpa]

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/150 (80%), Positives = 139/150 (92%)

Query: 1   MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQS 60
           MKVLPSGVYQYRF+VDG W+Y+PDLP  +DD GN +N LDLQ++VP+DLESIS FEPPQS
Sbjct: 144 MKVLPSGVYQYRFIVDGQWRYSPDLPWAKDDAGNAHNTLDLQDFVPEDLESISGFEPPQS 203

Query: 61  PETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKG 120
           PE SY+NLQL ++DFAKEPP+VPPHLQMTLLN+P+S MEIPPP S+PQHVVLNHLYMQKG
Sbjct: 204 PELSYSNLQLGSDDFAKEPPMVPPHLQMTLLNMPSSCMEIPPPSSKPQHVVLNHLYMQKG 263

Query: 121 KSGPSVVALGSTHRFLAKYVTVVLYKSMQR 150
           +SGP+VVALGSTHRFLAKYVTVVLYKS+QR
Sbjct: 264 RSGPAVVALGSTHRFLAKYVTVVLYKSLQR 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555761|ref|XP_003546198.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Glycine max]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/150 (78%), Positives = 138/150 (92%)

Query: 1   MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQS 60
           MKVLPSGVYQ+RF+VDG W+YAPDLP  QDD GN YNILDLQ+YVP+D+ SISSFEPP+S
Sbjct: 143 MKVLPSGVYQFRFIVDGQWRYAPDLPWAQDDAGNAYNILDLQDYVPEDIGSISSFEPPKS 202

Query: 61  PETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKG 120
           P++SYNNLQL++ED+AKEPPLVPP+LQMTLLN+P++ ME+ P  SRPQHVVLNHLYMQKG
Sbjct: 203 PDSSYNNLQLSSEDYAKEPPLVPPYLQMTLLNIPSTNMEVQPLTSRPQHVVLNHLYMQKG 262

Query: 121 KSGPSVVALGSTHRFLAKYVTVVLYKSMQR 150
           K  PSVVALG+THRF+AKYVTVVLYKS+QR
Sbjct: 263 KGSPSVVALGTTHRFVAKYVTVVLYKSLQR 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532768|ref|XP_003534943.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Glycine max]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 118/150 (78%), Positives = 137/150 (91%)

Query: 1   MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQS 60
           MKVLPSGVYQ+RF+VDG W+YAPDLP  QDD GN YN+LDLQ+YVP+D+ SISSFEPPQS
Sbjct: 154 MKVLPSGVYQFRFIVDGQWRYAPDLPWAQDDSGNAYNVLDLQDYVPEDIGSISSFEPPQS 213

Query: 61  PETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKG 120
           P++SYNNLQL++ED+AKEPPLVPP+LQMTLLNVP++ ME+ P  SRPQHVVLNHLYMQKG
Sbjct: 214 PDSSYNNLQLSSEDYAKEPPLVPPYLQMTLLNVPSTNMEVQPLTSRPQHVVLNHLYMQKG 273

Query: 121 KSGPSVVALGSTHRFLAKYVTVVLYKSMQR 150
           K  PSVVALG+T RF+AKYVTVVLYKS+QR
Sbjct: 274 KGSPSVVALGTTQRFVAKYVTVVLYKSLQR 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443686|ref|XP_004139608.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis sativus]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 118/150 (78%), Positives = 136/150 (90%)

Query: 1   MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQS 60
           MKVLP+GVYQYRFLVDG W+YAP+LP  QDD GN YN+LDLQ+ VP+D+ESISSFEPPQS
Sbjct: 105 MKVLPAGVYQYRFLVDGQWRYAPELPWAQDDAGNAYNVLDLQDNVPEDIESISSFEPPQS 164

Query: 61  PETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKG 120
           P++SY+NL L ++D+AKEPPLVPPHLQ TLLN P++YMEIP  LSRPQHVVLNHLYMQ+G
Sbjct: 165 PDSSYDNLLLGSDDYAKEPPLVPPHLQRTLLNSPSTYMEIPTCLSRPQHVVLNHLYMQRG 224

Query: 121 KSGPSVVALGSTHRFLAKYVTVVLYKSMQR 150
           K GPSVVALG+THRFL+KYVTVVLYKS QR
Sbjct: 225 KGGPSVVALGTTHRFLSKYVTVVLYKSFQR 254

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518079|ref|XP_004166071.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis sativus]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 118/150 (78%), Positives = 136/150 (90%)

Query: 1   MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQS 60
           MKVLP+GVYQYRFLVDG W+YAP+LP  QDD GN YN+LDLQ+ VP+D+ESISSFEPPQS
Sbjct: 157 MKVLPAGVYQYRFLVDGQWRYAPELPWAQDDAGNAYNVLDLQDNVPEDIESISSFEPPQS 216

Query: 61  PETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKG 120
           P++SY+NL L ++D+AKEPPLVPPHLQ TLLN P++YMEIP  LSRPQHVVLNHLYMQ+G
Sbjct: 217 PDSSYDNLLLGSDDYAKEPPLVPPHLQRTLLNSPSTYMEIPTCLSRPQHVVLNHLYMQRG 276

Query: 121 KSGPSVVALGSTHRFLAKYVTVVLYKSMQR 150
           K GPSVVALG+THRFL+KYVTVVLYKS QR
Sbjct: 277 KGGPSVVALGTTHRFLSKYVTVVLYKSFQR 306

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
TAIR|locus:2178963	320	AKINBETA1 "AT5G21170" [Arabido	0.96	0.45	0.527	5.7e-36
TAIR|locus:2046208	114	AT2G28060 [Arabidopsis thalian	0.673	0.885	0.514	3e-21
DICTYBASE|DDB_G0281089	347	prkab "AMP-activated protein k	0.913	0.394	0.381	1.3e-20
FB|FBgn0260972	341	alc "alicorn" [Drosophila mela	0.92	0.404	0.36	2.5e-19
ZFIN|ZDB-GENE-040718-377	268	prkab1a "protein kinase, AMP-a	0.94	0.526	0.385	2.5e-19
UNIPROTKB|Q27IP4	273	PRKAB1 "Uncharacterized protei	0.94	0.516	0.379	4e-19
UNIPROTKB|F1RL45	270	PRKAB1 "5'-AMP-activated prote	0.94	0.522	0.385	6.5e-19
RGD|620905	271	Prkab2 "protein kinase, AMP-ac	0.94	0.520	0.361	8.3e-19
UNIPROTKB|E2RH75	270	PRKAB1 "Uncharacterized protei	0.94	0.522	0.379	1.1e-18
UNIPROTKB|B4DH06	190	PRKAB2 "cDNA FLJ50408, highly	0.94	0.742	0.361	1.1e-18

TAIR|locus:2178963 AKINBETA1 "AT5G21170" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 78/148 (52%), Positives = 101/148 (68%)

Query:     3 VLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPE 62
             VLPSG+Y Y+ +VDG  KY PDLP   D+ GNV NILD+  +VP++ ESI  FE P SP+
Sbjct:   177 VLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVHNFVPENPESIVEFEAPPSPD 236

Query:    63 TSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKS 122
              SY      AED+AKEP  VPP L +TLL       E     ++PQHVVLNH+++++G +
Sbjct:   237 HSYGQTLPAAEDYAKEPLAVPPQLHLTLLGTT----EETAIATKPQHVVLNHVFIEQGWT 292

Query:   123 GPSVVALGSTHRFLAKYVTVVLYKSMQR 150
               S+VALG THRF +KY+TVVLYK + R
Sbjct:   293 PQSIVALGLTHRFESKYITVVLYKPLTR 320

GO:0004679 "AMP-activated protein kinase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2046208 AT2G28060 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 55/107 (51%), Positives = 72/107 (67%)

Query:    46 PDDLE--SISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPP 103
             PDD E  ++  FE P SP +SYNN+  + ED  ++PP VPPHLQ +LL    S ME+   
Sbjct:     6 PDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGS-MELA-- 62

Query:   104 LSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR 150
                PQ+VVLNHLY++   +  SVVALG +HRF  K+VTVV+YK +QR
Sbjct:    63 -YAPQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQR 108

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0281089 prkab "AMP-activated protein kinase beta subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 55/144 (38%), Positives = 83/144 (57%)

Query:     4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPET 63
             L  GV+QY+++VDG W ++ + P   D  GN+ N ++++   P +   +++ +   +P  
Sbjct:   197 LAPGVHQYKYIVDGKWIHSTEQPVAADIKGNLLNFIEVKNKDPSN--DLNTLKLSSTPPG 254

Query:    64 SYNNLQLTAEDFAK-EPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKS 122
             SY+   +  E+  K  PP +PPHL+  LLN   S  E P  L  P HV+LNHLY    K+
Sbjct:   255 SYSRT-IPEEEVQKIPPPSLPPHLRRALLNTQPS-TEDPTLLPLPHHVMLNHLYSLPRKN 312

Query:   123 GPSVVALGSTHRFLAKYVTVVLYK 146
               S+  LG THR+  K+VT VLYK
Sbjct:   313 KVSI--LGVTHRYKTKFVTTVLYK 334

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0260972 alc "alicorn" [Drosophila melanogaster (taxid:7227)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 54/150 (36%), Positives = 77/150 (51%)

Query:     4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPET 63
             LP G +QY+F VDG WK+ P L S ++ +G   N++ ++E    D E   +        T
Sbjct:   195 LPEGDHQYKFCVDGEWKHDPKLKSVENAEGQRNNLVSVRE---SDFEVFQALAKDSENVT 251

Query:    64 SYNNLQLTAE-------DFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLY 116
             +Y   + + E       +    PP++PPHL   +LN        P  L  P HV+LNHLY
Sbjct:   252 NYAEKEYSQEVPQVKPWEKVSGPPVLPPHLLQVILNKDTPLSCEPTLLPEPNHVMLNHLY 311

Query:   117 MQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
                 K G  V+ L +THR+  KYVT +LYK
Sbjct:   312 ALSIKDG--VMVLSATHRYRKKYVTTLLYK 339

GO:0004679 "AMP-activated protein kinase activity" evidence=ISS

GO:0070050 "neuron homeostasis" evidence=IMP

GO:0035090 "maintenance of apical/basal cell polarity" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IMP

ZFIN|ZDB-GENE-040718-377 prkab1a "protein kinase, AMP-activated, beta 1 non-catalytic subunit, a" [Danio rerio (taxid:7955)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 59/153 (38%), Positives = 78/153 (50%)

Query:     4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEY---VPD----DLESISSFE 56
             LP G +QY+F VDGLW + P  P   +  G V NI+ +++    V D    D +  S   
Sbjct:   116 LPEGEHQYKFYVDGLWTHDPTEPVVTNQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDMS 175

Query:    57 P-PQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLN 113
                 SP   Y+    T   E+  K PP++PPHL   +LN        P  L  P HV+LN
Sbjct:   176 DLSSSPPGPYHQDAYTPKQEEKFKSPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 235

Query:   114 HLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
             HLY    K G  V+ L +THR+  KYVT +LYK
Sbjct:   236 HLYALSIKDG--VMVLSATHRYKKKYVTTLLYK 266

GO:0005575 "cellular_component" evidence=ND

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|Q27IP4 PRKAB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 58/153 (37%), Positives = 77/153 (50%)

Query:     4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEY---VPD----DLESISSF- 55
             LP G +QY+F VDG W + P  P      G V N++ +++    V D    D +  S   
Sbjct:   121 LPEGEHQYKFFVDGQWTHDPSEPVVTSQLGTVNNVIQVKKTDFEVFDALMVDSQKCSDMS 180

Query:    56 EPPQSPETSYNNLQLT--AEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLN 113
             E   SP   Y+       AE+  K PP++PPHL   +LN        P  L  P HV+LN
Sbjct:   181 ELSSSPPGPYHQEPYVCKAEERFKSPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 240

Query:   114 HLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
             HLY    K G  V+ L +THR+  KYVT +LYK
Sbjct:   241 HLYALSIKDG--VMVLSATHRYKKKYVTTLLYK 271

GO:0016301 "kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1RL45 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Sus scrofa (taxid:9823)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 59/153 (38%), Positives = 77/153 (50%)

Query:     4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEY---VPD----DLESISSF- 55
             LP G +QY+FLVDG W + P  P      G V NI+ +++    V D    D +  S   
Sbjct:   118 LPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS 177

Query:    56 EPPQSPETSYNNLQLT--AEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLN 113
             E   SP   Y+        E+  K PP++PPHL   +LN        P  L  P HV+LN
Sbjct:   178 ELSSSPPGPYHQEPYVWKPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 237

Query:   114 HLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
             HLY    K G  V+ L +THR+  KYVT +LYK
Sbjct:   238 HLYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268

GO:0005634 "nucleus" evidence=IEA

RGD|620905 Prkab2 "protein kinase, AMP-activated, beta 2 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 56/155 (36%), Positives = 77/155 (49%)

Query:     4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNIL-----DLQEYVPDDLESISSFEPP 58
             LP G +QY+F VDG W + P  P      G + N++     D + +    L+S+ S E  
Sbjct:   117 LPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETS 176

Query:    59 -----QSPETSYNNLQLT--AEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVV 111
                   SP   Y        +E+  K PP++PPHL   +LN   +    P  L  P HV+
Sbjct:   177 CRDLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVM 236

Query:   112 LNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
             LNHLY    K   SV+ L +THR+  KYVT +LYK
Sbjct:   237 LNHLYALSTKD--SVMVLSATHRYKKKYVTTLLYK 269

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO;ISS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IDA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO;IDA

GO:0042802 "identical protein binding" evidence=ISO

UNIPROTKB|E2RH75 PRKAB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 58/153 (37%), Positives = 77/153 (50%)

Query:     4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEY---VPD----DLESISSF- 55
             LP G +QY+F VDG W + P  P      G V NI+ +++    V D    D +  S   
Sbjct:   118 LPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS 177

Query:    56 EPPQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLN 113
             E   SP   Y+     +  E+  K PP++PPHL   +LN        P  L  P HV+LN
Sbjct:   178 ELSSSPPGPYHQEPYVSKPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 237

Query:   114 HLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
             HLY    K G  V+ L +THR+  KYVT +LYK
Sbjct:   238 HLYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|B4DH06 PRKAB2 "cDNA FLJ50408, highly similar to 5'-AMP-activated protein kinase subunit beta-2" [Homo sapiens (taxid:9606)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 56/155 (36%), Positives = 77/155 (49%)

Query:     4 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNIL-----DLQEYVPDDLESISSFEPP 58
             LP G +QY+F VDG W + P  P      G + N++     D + +    L+S+ S E  
Sbjct:    36 LPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETS 95

Query:    59 -----QSPETSYNN--LQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVV 111
                   SP   Y        +E+  K PP++PPHL   +LN   +    P  L  P HV+
Sbjct:    96 CRDLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVM 155

Query:   112 LNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
             LNHLY    K   SV+ L +THR+  KYVT +LYK
Sbjct:   156 LNHLYALSIKD--SVMVLSATHRYKKKYVTTLLYK 188

GO:0016301 "kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SCY5	KINB2_ARATH	No assigned EC number	0.78	1.0	0.5190	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
pfam04739	94	pfam04739, AMPKBI, 5'-AMP-activated protein kinase	6e-33
smart01010	100	smart01010, AMPKBI, 5'-AMP-activated protein kinas	3e-22
cd02859	80	cd02859, E_set_AMPKbeta_like_N, N-terminal Early s	9e-13

>gnl|CDD|218238 pfam04739, AMPKBI, 5'-AMP-activated protein kinase beta subunit, interation domain

 Score =  111 bits (280), Expect = 6e-33
 Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 9/96 (9%)

Query: 60  SPETSYNNL-------QLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVL 112
           SP +SY+N            E+FAKEPP +PPHL  T+LN P +  + P  L  P HVVL
Sbjct: 1   SPPSSYSNEIPANFQDLDFEEEFAKEPPSLPPHLLKTILNKPTASTDDPSLLPIPNHVVL 60

Query: 113 NHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSM 148
           NHLY    K    V+ALG+T R+ +KYVT VLYK +
Sbjct: 61  NHLYTSSIK--NGVLALGATTRYKSKYVTTVLYKPL 94

This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain (pfam02922) is sometimes found in proteins belonging to this family. Length = 94

>gnl|CDD|214973 smart01010, AMPKBI, 5'-AMP-activated protein kinase beta subunit, interation domain

 Score = 84.7 bits (210), Expect = 3e-22
 Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 14/102 (13%)

Query: 59  QSPETSYNN-----------LQLTAEDFAKEPPLVPPHLQMTLLNVPAS-YMEIPPPLSR 106
           QSP  SY N           ++ + E+  KEPP +PPHL+  +LN  ++   E P  L  
Sbjct: 1   QSPPESYTNEIPACFTDDDFIEESPEEKWKEPPALPPHLEKVILNTSSTATREDPSLLPI 60

Query: 107 PQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSM 148
           P HVVLNHLY    K    V+A+ +T R+  KYVT VLYK +
Sbjct: 61  PNHVVLNHLYTSSIK--DGVLAVAATTRYRGKYVTQVLYKPL 100

This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain is sometimes found in proteins belonging to this family. Length = 100

>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit

 Score = 59.5 bits (145), Expect = 9e-13
 Identities = 19/37 (51%), Positives = 28/37 (75%)

Query: 4  LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILD 40
          LP G Y+Y+F+VDG W + PDLP+  D+ GN+ N+L+
Sbjct: 43 LPPGRYEYKFIVDGEWVHDPDLPTVTDEFGNLNNVLE 79

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
KOG1616	289	consensus Protein involved in Snf1 protein kinase	100.0
PF04739	100	AMPKBI: 5'-AMP-activated protein kinase beta subun	100.0
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	99.54
cd02861	82	E_set_proteins_like E or "early" set-like proteins	98.82
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	97.02
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	94.95

>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.4e-43  Score=297.32  Aligned_cols=148  Identities=40%  Similarity=0.641  Sum_probs=135.6

Q ss_pred             CcccCCeeEEEEEEeCCEEEEcCCCCeeeCCCCCccceeecccCC--CCccccccCC----------CCCCCC-------
Q 031974            1 MKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYV--PDDLESISSF----------EPPQSP-------   61 (150)
Q Consensus         1 i~~Lp~G~~~yKFiVDG~W~~d~~~p~~~d~~G~~nN~i~v~~~~--p~~~~~~~~~----------~~~~sp-------   61 (150)
                      +++|++|.|+|||+|||+|+||+++|+++|+.|++||+|+|.+..  .+.++.+.++          +.+..+       
T Consensus       121 ~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~~N~i~v~~~~~v~~~~~~l~~~~~~~~~~~s~e~~~~~~~~~~~~  200 (289)
T KOG1616|consen  121 ILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNLNNILEVQDPDEVFEVFQALEEDLPSSNHSESSEVPNLPEELEAKP  200 (289)
T ss_pred             eEecCCceEEEEEecCCceecCCCCcccccccCCcccceEecCccccchhhhhhhhhccccccccccccCCCcccccccc
Confidence            478999999999999999999999999999999999999999888  7777766555          444444       


Q ss_pred             CCCCccccCCcccccCC--CCCCCccccccccCCCCCCCCCCCCCCCCCeeeeceeEEeccccCCcEEEEeeeeeeCcee
Q 031974           62 ETSYNNLQLTAEDFAKE--PPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKY  139 (150)
Q Consensus        62 ~~~Y~~~~p~~~~~~~~--PP~LPphL~~~iLN~~~~~~~~~~~Lp~P~HVvLNHLy~~si~~~~~vl~l~~T~Ryk~Ky  139 (150)
                      .++|+|+.|..+++.+.  ||.|||||.++|||+.+..+|+++.|++|+||+|||||+++|  +++++++++||||++||
T Consensus       201 ~~~y~~~~~~~~~~~~~~~~p~lpp~l~~v~lnk~~~~~~~~~~~~~p~hv~lnhl~~~si--k~~~~~~~~~~r~~~k~  278 (289)
T KOG1616|consen  201 LGSYTQEKPAVEDEEKAMAPPVLPPHLLQVILNKDTQVSCDPALLPEPNHVALNHLYALSI--KDGVMVLSFTHRYKKKY  278 (289)
T ss_pred             ccccccccchhhcchhcccCCCCCcchheeeccccccccccccccCCccchhhhhhhhhcc--CCCeeEecceecccccc
Confidence            89999999998877665  999999999999999999999999999999999999999998  58999999999999999


Q ss_pred             eEEEEEeeccC
Q 031974          140 VTVVLYKSMQR  150 (150)
Q Consensus       140 vTtvlYkp~~~  150 (150)
                      ||++||||+++
T Consensus       279 vt~~lyk~~~~  289 (289)
T KOG1616|consen  279 VTTGLYKPLQL  289 (289)
T ss_pred             eeEEeeeeccC
Confidence            99999999975

>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=100.00  E-value=5.2e-38  Score=227.84  Aligned_cols=87  Identities=55%  Similarity=0.865  Sum_probs=66.4

Q ss_pred             CCCCCCccccCCc------------ccccCCCCCCCccccccccCCCCCCCCCCCCCCCCCeeeeceeEEeccccCCcEE
Q 031974           60 SPETSYNNLQLTA------------EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVV  127 (150)
Q Consensus        60 sp~~~Y~~~~p~~------------~~~~~~PP~LPphL~~~iLN~~~~~~~~~~~Lp~P~HVvLNHLy~~si~~~~~vl  127 (150)
                      +++++|++++|..            ++|+++||.||+||+++|||++....|+++.||+|+||||||||+++|  ++|||
T Consensus         2 ~p~~~ys~~iP~~~~~~~~~~~~~~~~~~~~PP~lPp~L~~~iLN~~~~~~~~~~~Lp~P~HV~LNHL~~~~i--k~~v~   79 (100)
T PF04739_consen    2 SPESSYSSEIPENLQDDDEFEEQPEEEFAKEPPSLPPHLQKTILNKPSSSTDDPSVLPIPNHVVLNHLYTSSI--KDGVL   79 (100)
T ss_dssp             -----EESS--HCCCSCCCCCHHH--TCCCS--BS-GGGCSEECCSCTCHHSHTTB-----GGGTTBEEEEEE--BTTEE
T ss_pred             CCCcCccccCCccccchhhhhhhhcccccCCCCCCChhhCeeccCCCCcccCccccCCCCCEEEecceEEccc--CCCeE
Confidence            5778899888753            588999999999999999999988889999999999999999999998  57999


Q ss_pred             EEeeeeeeCceeeEEEEEeec
Q 031974          128 ALGSTHRFLAKYVTVVLYKSM  148 (150)
Q Consensus       128 ~l~~T~Ryk~KyvTtvlYkp~  148 (150)
                      |+|+|||||+||||||||||+
T Consensus        80 al~~T~Ryk~KyVT~vlYkP~  100 (100)
T PF04739_consen   80 ALGTTHRYKSKYVTTVLYKPI  100 (100)
T ss_dssp             EEEEEEEETTEEEEEEEEEE-
T ss_pred             EEEEEEEecceEEEEEEecCC
Confidence            999999999999999999996

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This interaction domain is found in the beta subunit of the 5-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex []. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known []. The isoamylase domain (IPR004193 from INTERPRO) is sometimes found associated with proteins that contain this C-terminal domain.; GO: 0005515 protein binding; PDB: 2QRE_D 2OOY_B 2OOX_B 2QRD_D 2QR1_D 2QRC_D 1Z0N_C 4EAK_B 4EAL_B 4EAG_B ....

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=99.54  E-value=3.6e-15  Score=103.12  Aligned_cols=39  Identities=56%  Similarity=1.157  Sum_probs=37.5

Q ss_pred             cccCCeeEEEEEEeCCEEEEcCCCCeeeCCCCCccceee
Q 031974            2 KVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILD   40 (150)
Q Consensus         2 ~~Lp~G~~~yKFiVDG~W~~d~~~p~~~d~~G~~nN~i~   40 (150)
                      +.||+|.|+|||+|||+|++|+++|++.|+.|+.||+|+
T Consensus        41 ~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~i~   79 (79)
T cd02859          41 LRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNVID   79 (79)
T ss_pred             EEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeeeEC
Confidence            579999999999999999999999999999999999985

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=98.82  E-value=4.3e-09  Score=72.60  Aligned_cols=38  Identities=32%  Similarity=0.669  Sum_probs=34.1

Q ss_pred             cccCCeeEEEEEEeCCEEE-EcCCCCe-eeCCCCCcccee
Q 031974            2 KVLPSGVYQYRFLVDGLWK-YAPDLPS-TQDDDGNVYNIL   39 (150)
Q Consensus         2 ~~Lp~G~~~yKFiVDG~W~-~d~~~p~-~~d~~G~~nN~i   39 (150)
                      +.|++|.|+|||+|||.|. .||..+. ..|..|+.||+|
T Consensus        42 ~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n~v~   81 (82)
T cd02861          42 VELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKNAVF   81 (82)
T ss_pred             EeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccceEc
Confidence            4689999999999999999 9999985 788889999987

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=97.02  E-value=0.0011  Score=46.02  Aligned_cols=35  Identities=34%  Similarity=0.585  Sum_probs=27.3

Q ss_pred             ccCCeeEEEEEEeCCEEEEcCCCCeeeCCCCCccc
Q 031974            3 VLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYN   37 (150)
Q Consensus         3 ~Lp~G~~~yKFiVDG~W~~d~~~p~~~d~~G~~nN   37 (150)
                      .|.+|.|+|+|+|||.|..||..+...=..+..-+
T Consensus        48 ~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~   82 (85)
T cd02858          48 PLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTS   82 (85)
T ss_pred             CCCCcEEEEEEEECCeEecCCCCCceeecccccce
Confidence            47789999999999999999999876533443333

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=94.95  E-value=0.019  Score=37.67  Aligned_cols=27  Identities=26%  Similarity=0.529  Sum_probs=21.8

Q ss_pred             eeEEEEEEeCCEEEEcCCCCeeeCCCC
Q 031974            7 GVYQYRFLVDGLWKYAPDLPSTQDDDG   33 (150)
Q Consensus         7 G~~~yKFiVDG~W~~d~~~p~~~d~~G   33 (150)
                      |.+.|+|.|||.|..++..+...+...
T Consensus        51 ~~~~Y~~~v~~~~~~~~~~~~~~~~~~   77 (83)
T cd02688          51 GKYQYKYVLDGGKGPDEGEPKADEGGS   77 (83)
T ss_pred             CCeEEEEEEeCCCCCCCCChhhhcCCc
Confidence            889999999999999998865544333

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	150
4eai_B	85	Co-Crystal Structure Of An Ampk Core With Amp Lengt		3e-10
2v8q_B	87	Crystal Structure Of The Regulatory Fragment Of Mam		4e-10
4eag_B	85	Co-Crystal Structure Of An Chimeric Ampk Core With		5e-10
4eak_B	72	Co-Crystal Structure Of An Ampk Core With Atp Lengt		1e-09
2oox_B	97	Crystal Structure Of The Adenylate Sensor From Amp-		8e-05

>pdb|4EAI|B Chain B, Co-Crystal Structure Of An Ampk Core With Amp Length = 85

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 72  AEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGS 131
           +E+  K PP++PPHL   +LN   +    P  L  P HV+LNHLY    K   SV+ L +
Sbjct: 11  SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKD--SVMVLSA 68
Query: 132 THRFLAKYVTVVLYK 146
           THR+  KYVT +LYK
Sbjct: 69  THRYKKKYVTTLLYK 83

>pdb|2V8Q|B Chain B, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 87

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 72  AEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGS 131
           +E+  K PP++PPHL   +LN   +    P  L  P HV+LNHLY    K   SV+ L +
Sbjct: 13  SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKD--SVMVLSA 70
Query: 132 THRFLAKYVTVVLYK 146
           THR+  KYVT +LYK
Sbjct: 71  THRYKKKYVTTLLYK 85

>pdb|4EAG|B Chain B, Co-Crystal Structure Of An Chimeric Ampk Core With Atp Length = 85

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 73  EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGST 132
           E+  K PP++PPHL   +LN        P  L  P HV+LNHLY    K G  V+ L +T
Sbjct: 12  EERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDG--VMVLSAT 69
Query: 133 HRFLAKYVTVVLYK 146
           HR+  KYVT +LYK
Sbjct: 70  HRYKKKYVTTLLYK 83

>pdb|4EAK|B Chain B, Co-Crystal Structure Of An Ampk Core With Atp Length = 72

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 77  KEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFL 136
           K PP++PPHL   +LN        P  L  P HV+LNHLY    K G  V+ L +THR+ 
Sbjct: 3   KAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDG--VMVLSATHRYK 60
Query: 137 AKYVTVVLYK 146
            KYVT +LYK
Sbjct: 61  KKYVTTLLYK 70

>pdb|2OOX|B Chain B, Crystal Structure Of The Adenylate Sensor From Amp-activated Protein Kinase Complexed With Amp Length = 97

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 87  QMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 146
           +  +LN   +Y E    L  P HV+LNHL     + G  V+AL +T R+  KYVT  ++K
Sbjct: 36  EKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLG--VLALSATTRYHRKYVTTAMFK 93
Query: 147 SM 148
           + 
Sbjct: 94  NF 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
3t4n_B	113	SNF1 protein kinase subunit beta-2; CBS domain, nu	3e-34
2v8q_B	87	5'-AMP-activated protein kinase subunit beta-2; ph	4e-29
2qrd_B	97	SPCC1919.03C protein; AMPK, ADP, ATP-binding, kina	5e-26
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	5e-25
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	4e-12
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	6e-10

>3t4n_B SNF1 protein kinase subunit beta-2; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_B* 3te5_B* Length = 113

 Score =  115 bits (288), Expect = 3e-34
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 43  EYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEI-- 100
           EY  D     +     +    + +  Q   +     PP +PP L+  +LN   +  +   
Sbjct: 2   EYTTDIPAVFTDPSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFN 61

Query: 101 ---PPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR 150
                 L  P HVVLNHL     K     + + S  R+  KYVT +LY  ++ 
Sbjct: 62  ENNSGALPIPNHVVLNHLVTSSIKHN--TLCVASIVRYKQKYVTQILYTPIES 112

>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens} SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B* 2y94_B* 2ya3_B* Length = 87

 Score =  101 bits (252), Expect = 4e-29
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 64  SYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSG 123
                   +E+  K PP++PPHL   +LN   +    P  L  P HV+LNHLY    K  
Sbjct: 5   GQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKDS 64

Query: 124 PSVVALGSTHRFLAKYVTVVLYKSM 148
             V+ L +THR+  KYVT +LYK +
Sbjct: 65  --VMVLSATHRYKKKYVTTLLYKPI 87

>2qrd_B SPCC1919.03C protein; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.353.1.1 PDB: 2ooy_B* 2qr1_B* 2qrc_B* 2oox_B* 2qre_B* Length = 97

 Score = 93.6 bits (232), Expect = 5e-26
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 2/98 (2%)

Query: 52  ISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVV 111
           +S  E   +   ++       E    +PP +PPHL+  +LN   +Y E    L  P HV+
Sbjct: 1   MSESEQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVL 60

Query: 112 LNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQ 149
           LNHL     + G  V+AL +T R+  KYVT  ++K+  
Sbjct: 61  LNHLAAANTQLG--VLALSATTRYHRKYVTTAMFKNFD 96

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score = 95.5 bits (236), Expect = 5e-25
 Identities = 41/207 (19%), Positives = 70/207 (33%), Gaps = 64/207 (30%)

Query: 4   LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDL-------------- 49
           L  G +++RF+VD   + +  LP+  D  GN  N +++++   +                
Sbjct: 48  LLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVNYIEVRQPEKNPTNEKIRSKEADSMRP 107

Query: 50  ----ESISSFEPPQSPETSYNNLQLTAEDFAKEP-------------------------- 79
                S  + +  + P+   +      ED +  P                          
Sbjct: 108 PTSDRSSIALQIGKDPDDFGDGYTRFHEDLSPRPPLEYTTDIPAVFTDPSVMERYYYTLD 167

Query: 80  -------------PLVPPHLQMTLLNVPASYMEI-----PPPLSRPQHVVLNHLYMQKGK 121
                        P +PP L+  +LN   +  +         L  P HVVLNHL     K
Sbjct: 168 RQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSIK 227

Query: 122 SGPSVVALGSTHRFLAKYVTVVLYKSM 148
                + + S  R+  KYVT +LY  +
Sbjct: 228 HN--TLCVASIVRYKQKYVTQILYTPI 252

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294

 Score = 60.9 bits (147), Expect = 4e-12
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 4   LPSGVYQYRFLVDGLWKYAPDLPSTQDD-DGNVYNILDLQEYVPDDLESISSFEPPQ 59
           LP G ++Y++++DG W +    P    + DG+  N       V DD  S+      +
Sbjct: 214 LPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAK----VVDDPTSVDGTTRER 266

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96

 Score = 52.2 bits (125), Expect = 6e-10
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 4  LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLE 50
          LP G +QY+F VDG W + P  P      G V NI+ +++    D E
Sbjct: 51 LPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKK---TDFE 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	100.0
2v8q_B	87	5'-AMP-activated protein kinase subunit beta-2; ph	100.0
2qrd_B	97	SPCC1919.03C protein; AMPK, ADP, ATP-binding, kina	100.0
3t4n_B	113	SNF1 protein kinase subunit beta-2; CBS domain, nu	100.0
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	99.48
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	99.42
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	98.26
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	97.29
2z0b_A	131	GDE5, KIAA1434, putative glycerophosphodiester pho	90.07
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	82.64
1mhx_A	65	Immunoglobulin-binding protein G; alpha-beta prote	80.24

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=100.00  E-value=8.4e-55  Score=357.89  Aligned_cols=145  Identities=28%  Similarity=0.421  Sum_probs=90.8

Q ss_pred             cccCCeeEEEEEEeCCEEEEcCCCCeeeCCCCCccceeecccCCCCcc------------------c-------------
Q 031974            2 KVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDL------------------E-------------   50 (150)
Q Consensus         2 ~~Lp~G~~~yKFiVDG~W~~d~~~p~~~d~~G~~nN~i~v~~~~p~~~------------------~-------------   50 (150)
                      +.|++|.|+|||+|||+|++|++.|++.|+.|++||+|+|.+..+...                  .             
T Consensus        46 v~LppG~y~YKFiVDG~w~~Dp~~p~~~d~~G~~nNvi~V~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  125 (252)
T 2qlv_B           46 LRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVNYIEVRQPEKNPTNEKIRSKEADSMRPPTSDRSSIALQIGKDPDD  125 (252)
T ss_dssp             EEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEEEEEECC--------------------------------------
T ss_pred             EECCCCEEEEEEEECCEEEeCCCCCEEecCCCcCcceeeccCccccccccccccccccccccccccccccccccccCccc
Confidence            479999999999999999999999999999999999999987421110                  0             


Q ss_pred             ---cccCC--CCCCCCCCCCccccCCc-------cc--------------ccCCCCCCCccccccccCCCCCC-----CC
Q 031974           51 ---SISSF--EPPQSPETSYNNLQLTA-------ED--------------FAKEPPLVPPHLQMTLLNVPASY-----ME   99 (150)
Q Consensus        51 ---~~~~~--~~~~sp~~~Y~~~~p~~-------~~--------------~~~~PP~LPphL~~~iLN~~~~~-----~~   99 (150)
                         +.+++  +.+.+|.++|+|++|..       |+              .+++||+|||||+++|||+++..     .|
T Consensus       126 ~~~~~~~~~~~~~~~p~~~y~~eiP~~~~~~~~~e~~~~~~d~~~~~~~~~~~~PP~LPphL~~~iLN~~~~~~~~~~~~  205 (252)
T 2qlv_B          126 FGDGYTRFHEDLSPRPPLEYTTDIPAVFTDPSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNEN  205 (252)
T ss_dssp             --------------------CCCCCGGGTCHHHHHHHHHHHCC-----------CCCCCCC-------------------
T ss_pred             cccccccccccCCCCCcccccccCCchhcccchhhhhhhcccccccccccccCCCCCCChhhcchhcCCCCccccccccC
Confidence               11112  45678899999999963       22              24899999999999999998775     47


Q ss_pred             CCCCCCCCCeeeeceeEEeccccCCcEEEEeeeeeeCceeeEEEEEeec
Q 031974          100 IPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSM  148 (150)
Q Consensus       100 ~~~~Lp~P~HVvLNHLy~~si~~~~~vl~l~~T~Ryk~KyvTtvlYkp~  148 (150)
                      ++++||+||||||||||++||  |+||||||||||||+|||||||||||
T Consensus       206 ~~~~Lp~PnHVvLNHL~~~sI--k~~vlal~~T~RYk~KyVTtvlYkP~  252 (252)
T 2qlv_B          206 NSGALPIPNHVVLNHLVTSSI--KHNTLCVASIVRYKQKYVTQILYTPI  252 (252)
T ss_dssp             ---------CCSCCBCEECCC--CSSEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CcccCCCCCEEEeeeEEEecc--cCCEEEEeeeeeecceeEEEEEEeeC
Confidence            899999999999999999999  57999999999999999999999997

>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens} SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B* 2y94_B* 2ya3_B*

Probab=100.00  E-value=4.9e-40  Score=231.47  Aligned_cols=84  Identities=42%  Similarity=0.671  Sum_probs=67.5

Q ss_pred             CCCccccC--CcccccCCCCCCCccccccccCCCCCCCCCCCCCCCCCeeeeceeEEeccccCCcEEEEeeeeeeCceee
Q 031974           63 TSYNNLQL--TAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYV  140 (150)
Q Consensus        63 ~~Y~~~~p--~~~~~~~~PP~LPphL~~~iLN~~~~~~~~~~~Lp~P~HVvLNHLy~~si~~~~~vl~l~~T~Ryk~Kyv  140 (150)
                      ++|||+++  ..+|++++||.||+||+++|||.+++.+||++.||+|+||||||||++|||  ++|||+|+|||||+|||
T Consensus         2 ~~y~q~~~~~~~~~~~k~PP~LPphL~~~iLN~~~~~~~d~~~lp~P~HVvLNHLy~~sik--~~v~alg~T~Ry~~KyV   79 (87)
T 2v8q_B            2 GPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIK--DSVMVLSATHRYKKKYV   79 (87)
T ss_dssp             ---CCCCCCCCCCCSSSSCCBSCSSCCSEEECCCCC----------CCTTCTTBCEECCCB--TTEEEEEEEEEETTEEE
T ss_pred             CcccccCCCCCccccccCCCCCChhhceeccCCCCCCCCCcccCCCCCEEEeeeEEEeccc--CCeEEEeeeeeecceeE
Confidence            57999975  468999999999999999999999888899999999999999999999995  79999999999999999


Q ss_pred             EEEEEeec
Q 031974          141 TVVLYKSM  148 (150)
Q Consensus       141 TtvlYkp~  148 (150)
                      |+|||||+
T Consensus        80 T~vlYkP~   87 (87)
T 2v8q_B           80 TTLLYKPI   87 (87)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEeeC
Confidence            99999996

>2qrd_B SPCC1919.03C protein; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.353.1.1 PDB: 2ooy_B* 2qr1_B* 2qrc_B* 2oox_B* 2qre_B*

Probab=100.00  E-value=6.7e-39  Score=229.59  Aligned_cols=88  Identities=34%  Similarity=0.546  Sum_probs=79.7

Q ss_pred             CCCCCCccccCCcc-----c--ccCCCCCCCccccccccCCCCCCCCCCCCCCCCCeeeeceeEEeccccCCcEEEEeee
Q 031974           60 SPETSYNNLQLTAE-----D--FAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGST  132 (150)
Q Consensus        60 sp~~~Y~~~~p~~~-----~--~~~~PP~LPphL~~~iLN~~~~~~~~~~~Lp~P~HVvLNHLy~~si~~~~~vl~l~~T  132 (150)
                      |+.++|++++|...     +  .+++||.||+||+++|||.+++.+||++.||+|+||||||||++|||  +||||+|+|
T Consensus         2 ~~~~~y~~eIP~~~~~~~~~~~~~~~PP~LPphL~~~iLN~~~~~~~d~~~lp~P~HVvLNHLy~~sik--~~vlalg~T   79 (97)
T 2qrd_B            2 SESEQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQ--LGVLALSAT   79 (97)
T ss_dssp             --CCCCBSSCCGGGSCC--CCSCCCCCCBCCGGGSCCGGGCCTTHHHHTTBCCCCCGGGTTBCEEECCS--SSSEEEEEE
T ss_pred             CccccccccCChhhhcccccccccCCCCCCChhhcccccCCCCCCCCCcccCCCCCEEEeeeeeeeccc--CCeEEEeee
Confidence            57889999998642     3  56899999999999999998888889999999999999999999995  799999999


Q ss_pred             eeeCceeeEEEEEeecc
Q 031974          133 HRFLAKYVTVVLYKSMQ  149 (150)
Q Consensus       133 ~Ryk~KyvTtvlYkp~~  149 (150)
                      ||||+||||+|||||++
T Consensus        80 ~Ry~~KyVT~vlYkP~~   96 (97)
T 2qrd_B           80 TRYHRKYVTTAMFKNFD   96 (97)
T ss_dssp             EEETTEEEEEEEEECCC
T ss_pred             eeeeceeEEEEEEecCC
Confidence            99999999999999986

>3t4n_B SNF1 protein kinase subunit beta-2; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_B* 3te5_B*

Probab=100.00  E-value=3.5e-36  Score=220.44  Aligned_cols=75  Identities=33%  Similarity=0.486  Sum_probs=67.6

Q ss_pred             cccCCCCCCCccccccccCCCCCC-----CCCCCCCCCCCeeeeceeEEeccccCCcEEEEeeeeeeCceeeEEEEEeec
Q 031974           74 DFAKEPPLVPPHLQMTLLNVPASY-----MEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSM  148 (150)
Q Consensus        74 ~~~~~PP~LPphL~~~iLN~~~~~-----~~~~~~Lp~P~HVvLNHLy~~si~~~~~vl~l~~T~Ryk~KyvTtvlYkp~  148 (150)
                      .-+++||.|||||+++|||.++..     .|+++.||+|+||||||||++|||  +||||+|+|||||+||||+|||||+
T Consensus        33 ~~~~~PP~LPphL~~~iLN~~~~~~~~~~~d~~~~Lp~P~HVvLNHLy~~sik--~~vlalg~T~RYk~KyVT~VlYKP~  110 (113)
T 3t4n_B           33 TSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSIK--HNTLCVASIVRYKQKYVTQILYTPI  110 (113)
T ss_dssp             CGGGSCCBCCGGGCHHHHHHHHHHHHHHHHHCCSCCCCCCGGGTTBCEECCCB--TTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CcCCCCCCCChhhcccccCCCccccccccCCCcccCCCCCeEeeeeeeeeccc--CceEEEeeeeeeeceeEEEEEEeec
Confidence            346899999999999999987543     367899999999999999999995  6999999999999999999999999


Q ss_pred             cC
Q 031974          149 QR  150 (150)
Q Consensus       149 ~~  150 (150)
                      ||
T Consensus       111 q~  112 (113)
T 3t4n_B          111 ES  112 (113)
T ss_dssp             C-
T ss_pred             cc
Confidence            97

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=99.48  E-value=2.9e-14  Score=100.98  Aligned_cols=47  Identities=34%  Similarity=0.576  Sum_probs=42.9

Q ss_pred             cccCCeeEEEEEEeCCEEEEcCCCCeeeCCCCCccceeecccCCCCc
Q 031974            2 KVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDD   48 (150)
Q Consensus         2 ~~Lp~G~~~yKFiVDG~W~~d~~~p~~~d~~G~~nN~i~v~~~~p~~   48 (150)
                      +.|++|.|+|||+|||+|++||..|++.|+.|+.||+|+|.+..++.
T Consensus        49 v~l~~G~~~YKf~VdG~~~~DP~~~~~~d~~G~~Nnvi~V~~~d~~~   95 (96)
T 1z0n_A           49 LDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEV   95 (96)
T ss_dssp             EEECSEEEEEEEEETTEEECCTTSCEEECTTSCEEEEEEECSCTTEE
T ss_pred             EEccCCCEEEEEEECCeEEcCCCCCeEECCCCCEeEEEEEcCCCcCc
Confidence            36899999999999999999999999999999999999998766543

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=99.42  E-value=1.1e-13  Score=114.60  Aligned_cols=42  Identities=26%  Similarity=0.682  Sum_probs=39.7

Q ss_pred             cccCCeeEEEEEEeCCEEEEcCCCCee-eCCCCCccceeeccc
Q 031974            2 KVLPSGVYQYRFLVDGLWKYAPDLPST-QDDDGNVYNILDLQE   43 (150)
Q Consensus         2 ~~Lp~G~~~yKFiVDG~W~~d~~~p~~-~d~~G~~nN~i~v~~   43 (150)
                      +.||||.|+|||+|||+|++|++.|.+ .|+.|++||+|+|.+
T Consensus       212 ~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G~~nn~~~v~~  254 (294)
T 3nme_A          212 RELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKVVD  254 (294)
T ss_dssp             EEECSEEEEEEEEETTEEECCTTSCEECSCTTSCCEEEEEECC
T ss_pred             EECCCceEEEEEEECCEEeeCCCCCeeeECCCCCEeEEEEECC
Confidence            579999999999999999999999976 799999999999987

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=98.26  E-value=3.8e-07  Score=82.61  Aligned_cols=39  Identities=23%  Similarity=0.266  Sum_probs=34.0

Q ss_pred             CcccCCeeEEEEEEeCCEEE--EcCCCCe---eeCCCCCcccee
Q 031974            1 MKVLPSGVYQYRFLVDGLWK--YAPDLPS---TQDDDGNVYNIL   39 (150)
Q Consensus         1 i~~Lp~G~~~yKFiVDG~W~--~d~~~p~---~~d~~G~~nN~i   39 (150)
                      ++.||||+|||||+|||+|+  +||+.|.   +.|..|.-|++.
T Consensus        59 ~~~L~~g~~~y~f~vdg~~~~~~d~~~~~~~y~~~~~g~~n~~~  102 (696)
T 4aee_A           59 YLKLWPGEYGYGFQIDNDFENVLDPDNEEKKCVHTSFFPEYKKC  102 (696)
T ss_dssp             EEEECSEEEEEEEEETTCCSCCCCTTCCCEEEEECSSCTTSEEE
T ss_pred             EEEcCCceEEEEEEECCEEeecCCCCCCcccccccCCcccccee
Confidence            36899999999999999999  8899885   458899988884

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=97.29  E-value=0.00014  Score=65.05  Aligned_cols=27  Identities=41%  Similarity=0.839  Sum_probs=24.4

Q ss_pred             cccCCeeEEEEEEeCCEEEEcCCCCee
Q 031974            2 KVLPSGVYQYRFLVDGLWKYAPDLPST   28 (150)
Q Consensus         2 ~~Lp~G~~~yKFiVDG~W~~d~~~p~~   28 (150)
                      +.||||+|+|||+|||+|..|+..|..
T Consensus        57 v~L~~G~y~Y~f~vdg~~~~dp~n~~~   83 (645)
T 4aef_A           57 IALPEGVWHYAFSIDGKFVLDPDNPER   83 (645)
T ss_dssp             EEECSEEEEEEEEETTEEECCTTCCCE
T ss_pred             EEeCCceEEEEEEECCeEecCCCCCCc
Confidence            579999999999999999999988743

>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}

Probab=90.07  E-value=0.1  Score=37.94  Aligned_cols=14  Identities=50%  Similarity=0.833  Sum_probs=11.7

Q ss_pred             cccCCee-EEEEEEe
Q 031974            2 KVLPSGV-YQYRFLV   15 (150)
Q Consensus         2 ~~Lp~G~-~~yKFiV   15 (150)
                      +.||.|. ++|||++
T Consensus        61 v~lp~~~~~eYKyvi   75 (131)
T 2z0b_A           61 IVLSRGVSVQYRYFK   75 (131)
T ss_dssp             EEECTTCCEEEEEEE
T ss_pred             EEcCCCCcEEEEEEE
Confidence            4678885 9999998

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=82.64  E-value=0.72  Score=38.50  Aligned_cols=44  Identities=16%  Similarity=0.127  Sum_probs=36.1

Q ss_pred             ccCCeeE-EEEEEeC------------------------CEEEEcCCCCeeeCC-CCCccceeecccCCC
Q 031974            3 VLPSGVY-QYRFLVD------------------------GLWKYAPDLPSTQDD-DGNVYNILDLQEYVP   46 (150)
Q Consensus         3 ~Lp~G~~-~yKFiVD------------------------G~W~~d~~~p~~~d~-~G~~nN~i~v~~~~p   46 (150)
                      .||+|-| .|.|+||                        |..+.||..|..... .|...+++++.+..+
T Consensus        85 ~l~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~p~~~~  154 (403)
T 3c8d_A           85 QLNANWRGSYCFIPTERDDIFSAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEMPQAPL  154 (403)
T ss_dssp             EEETTCEEEEEEEEESCCSTTCCC--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEECTTCCC
T ss_pred             EECCCcEEEEEEEecCcccccccccchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccCCCCCc
Confidence            5889999 9999999                        788889999976544 488889999976544

>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A

Probab=80.24  E-value=0.89  Score=29.24  Aligned_cols=14  Identities=36%  Similarity=0.719  Sum_probs=12.0

Q ss_pred             eCCEEEEcCCCCee
Q 031974           15 VDGLWKYAPDLPST   28 (150)
Q Consensus        15 VDG~W~~d~~~p~~   28 (150)
                      |||+|.+|+.-.+-
T Consensus        48 vdgeWsYD~ATkTF   61 (65)
T 1mhx_A           48 VDGEWTYDDAAKTF   61 (65)
T ss_dssp             CCSEEEEETTTTEE
T ss_pred             CccEEEecCceeEE
Confidence            79999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d2v8qb1	83	d.353.1.1 (B:190-272) 5'-AMP-activated protein kin	2e-31
d2qrdb1	93	d.353.1.1 (B:205-297) AMP-activated protein kinase	1e-29
d2qlvb2	107	d.353.1.1 (B:306-412) SIP2 {Saccharomyces cerevisi	3e-25
d1z0na1	87	b.1.18.21 (A:77-163) 5'-AMP-activated protein kina	3e-11
d2qlvb1	87	b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi	6e-09

>d2v8qb1 d.353.1.1 (B:190-272) 5'-AMP-activated protein kinase subunit beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: 5'-AMP-activated protein kinase subunit beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 2e-31
 Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 72  AEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGS 131
           +E+  K PP++PPHL   +LN   +    P  L  P HV+LNHLY    K    V+ L +
Sbjct: 9   SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKDS--VMVLSA 66

Query: 132 THRFLAKYVTVVLYKSM 148
           THR+  KYVT +LYK +
Sbjct: 67  THRYKKKYVTTLLYKPI 83

>d2qrdb1 d.353.1.1 (B:205-297) AMP-activated protein kinase beta subunit {Schizosaccharomyces pombe [TaxId: 4896]} Length = 93

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: AMP-activated protein kinase beta subunit
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score =  101 bits (253), Expect = 1e-29
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 73  EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGST 132
           E    +PP +PPHL+  +LN   +Y E    L  P HV+LNHL     + G  V+AL +T
Sbjct: 19  ELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLG--VLALSAT 76

Query: 133 HRFLAKYVTVVLYKSMQ 149
            R+  KYVT  ++K+  
Sbjct: 77  TRYHRKYVTTAMFKNFD 93

>d2qlvb2 d.353.1.1 (B:306-412) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 107

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 90.8 bits (225), Expect = 3e-25
 Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 10/102 (9%)

Query: 55  FEPPQSPETSYNNL---QLTAEDFAKEPPLVPPHLQMTLLNVPASYMEI-----PPPLSR 106
           F  P   E  Y  L   Q   +     PP +PP L+  +LN   +  +         L  
Sbjct: 8   FTDPSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPI 67

Query: 107 PQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSM 148
           P HVVLNHL     K     + + S  R+  KYVT +LY  +
Sbjct: 68  PNHVVLNHLVTSSIKHN--TLCVASIVRYKQKYVTQILYTPI 107

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 54.1 bits (130), Expect = 3e-11
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 4  LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE 43
          LP G +QY+F VDG W + P  P      G V NI+ +++
Sbjct: 42 LPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKK 81

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 48.2 bits (114), Expect = 6e-09
 Identities = 12/40 (30%), Positives = 24/40 (60%)

Query: 4  LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE 43
          L  G +++RF+VD   + +  LP+  D  GN  N +++++
Sbjct: 48 LLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVNYIEVRQ 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d2qrdb1	93	AMP-activated protein kinase beta subunit {Schizos	100.0
d2v8qb1	83	5'-AMP-activated protein kinase subunit beta-2 {Hu	100.0
d2qlvb2	107	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	100.0
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	99.64
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	99.64
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	93.98
d2igda_	61	Immunoglobulin-binding protein G, different consti	83.44
d1mhxa_	65	Immunoglobulin-binding protein G, different consti	81.31

>d2qrdb1 d.353.1.1 (B:205-297) AMP-activated protein kinase beta subunit {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: AMP-activated protein kinase beta subunit
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=100.00  E-value=3.3e-40  Score=232.66  Aligned_cols=85  Identities=35%  Similarity=0.562  Sum_probs=80.1

Q ss_pred             CCCccccCC-------cccccCCCCCCCccccccccCCCCCCCCCCCCCCCCCeeeeceeEEeccccCCcEEEEeeeeee
Q 031974           63 TSYNNLQLT-------AEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRF  135 (150)
Q Consensus        63 ~~Y~~~~p~-------~~~~~~~PP~LPphL~~~iLN~~~~~~~~~~~Lp~P~HVvLNHLy~~si~~~~~vl~l~~T~Ry  135 (150)
                      ++|++++|.       .|+.+++||+|||||+++|||.++...|+++.||+|+||||||||++||  ++||+|+|+||||
T Consensus         2 ~~y~~~iP~~~~~~~~~~~~~~~PP~lPphL~~tiLN~~~~~~d~~~~Lp~P~HVvLNHLy~~si--k~~vlalg~T~Ry   79 (93)
T d2qrdb1           2 EQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANT--QLGVLALSATTRY   79 (93)
T ss_dssp             CCCBSSCCGGGSCC--CCSCCCCCCBCCGGGSCCGGGCCTTHHHHTTBCCCCCGGGTTBCEEECC--SSSSEEEEEEEEE
T ss_pred             cchhhhcChhhccccchhhccCCCCCCChHHceeccCCCCCCCCCcccCCCCCEEEeeheeeccc--cCceEEEEeEEEe
Confidence            579999986       5678899999999999999999999899999999999999999999999  5799999999999


Q ss_pred             CceeeEEEEEeecc
Q 031974          136 LAKYVTVVLYKSMQ  149 (150)
Q Consensus       136 k~KyvTtvlYkp~~  149 (150)
                      |+||||+|||||+|
T Consensus        80 ~~KyVT~VlYkPlq   93 (93)
T d2qrdb1          80 HRKYVTTAMFKNFD   93 (93)
T ss_dssp             TTEEEEEEEEECCC
T ss_pred             cceeEEEEEeccCC
Confidence            99999999999986

>d2v8qb1 d.353.1.1 (B:190-272) 5'-AMP-activated protein kinase subunit beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: 5'-AMP-activated protein kinase subunit beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-39  Score=224.24  Aligned_cols=81  Identities=42%  Similarity=0.666  Sum_probs=65.8

Q ss_pred             ccccC--CcccccCCCCCCCccccccccCCCCCCCCCCCCCCCCCeeeeceeEEeccccCCcEEEEeeeeeeCceeeEEE
Q 031974           66 NNLQL--TAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVV  143 (150)
Q Consensus        66 ~~~~p--~~~~~~~~PP~LPphL~~~iLN~~~~~~~~~~~Lp~P~HVvLNHLy~~si~~~~~vl~l~~T~Ryk~KyvTtv  143 (150)
                      ||+.+  ..||++++||.|||||++++||.+++..|+++.||+|+||||||||++|||  ++|+|+|+|||||+||||+|
T Consensus         1 gq~~~~~~~ed~~k~PP~lPp~L~~~iLN~~~~~~~~~~~lp~P~HVvLNHLy~~sik--~~v~alg~T~Ry~~KyVT~V   78 (83)
T d2v8qb1           1 GQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIK--DSVMVLSATHRYKKKYVTTL   78 (83)
T ss_dssp             CCCCCCCCCCCSSSSCCBSCSSCCSEEECCCCC----------CCTTCTTBCEECCCB--TTEEEEEEEEEETTEEEEEE
T ss_pred             CCcccccChhhccCCCCCCChhhceeccCCCCCCCCCcccCCCCCEEEeeeeeecccc--CceEEEEeEEEecceeEEEE
Confidence            46654  458999999999999999999999998899999999999999999999994  79999999999999999999


Q ss_pred             EEeec
Q 031974          144 LYKSM  148 (150)
Q Consensus       144 lYkp~  148 (150)
                      ||||+
T Consensus        79 lYkPl   83 (83)
T d2v8qb1          79 LYKPI   83 (83)
T ss_dssp             EEEEC
T ss_pred             EEeeC
Confidence            99996

>d2qlvb2 d.353.1.1 (B:306-412) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=5.6e-35  Score=210.67  Aligned_cols=74  Identities=32%  Similarity=0.479  Sum_probs=43.7

Q ss_pred             ccccCCCCCCCccccccccCCCCCC-----CCCCCCCCCCCeeeeceeEEeccccCCcEEEEeeeeeeCceeeEEEEEee
Q 031974           73 EDFAKEPPLVPPHLQMTLLNVPASY-----MEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKS  147 (150)
Q Consensus        73 ~~~~~~PP~LPphL~~~iLN~~~~~-----~~~~~~Lp~P~HVvLNHLy~~si~~~~~vl~l~~T~Ryk~KyvTtvlYkp  147 (150)
                      .+.++.||+||+||+++|||+.+..     .+++++||+|+||||||||++||  |++|||+|+|||||+||||+|||||
T Consensus        29 ~~~~~~PP~LPp~L~~tiLN~~~~~~d~~~~~~~~~Lp~PnHVvLNHLyt~si--k~~vlalg~T~RY~~KyVT~VlYkP  106 (107)
T d2qlvb2          29 DTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSI--KHNTLCVASIVRYKQKYVTQILYTP  106 (107)
T ss_dssp             ------CCCCCCC----------------------------CCSCCBCEECCC--CSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred             cccCCCCCCCChHHceeccCCCCcccCccccCCcccCCCCCeEEeeeeeeccc--cCceEEEEeEEeecceeEEEEEeec
Confidence            4567899999999999999986543     45799999999999999999999  5799999999999999999999999


Q ss_pred             c
Q 031974          148 M  148 (150)
Q Consensus       148 ~  148 (150)
                      +
T Consensus       107 l  107 (107)
T d2qlvb2         107 I  107 (107)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=99.64  E-value=7.3e-17  Score=110.89  Aligned_cols=45  Identities=36%  Similarity=0.603  Sum_probs=42.2

Q ss_pred             cccCCeeEEEEEEeCCEEEEcCCCCeeeCCCCCccceeecccCCC
Q 031974            2 KVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVP   46 (150)
Q Consensus         2 ~~Lp~G~~~yKFiVDG~W~~d~~~p~~~d~~G~~nN~i~v~~~~p   46 (150)
                      +.|++|.|+|||+|||+|++|++.|++.|+.|+.||+|.|.+.+-
T Consensus        40 l~L~~G~y~YKFiVDG~w~~d~~~~~~~d~~G~~Nnvi~V~~~D~   84 (87)
T d1z0na1          40 LDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDF   84 (87)
T ss_dssp             EEECSEEEEEEEEETTEEECCTTSCEEECTTSCEEEEEEECSCTT
T ss_pred             EECCCceEEEEEEECCEEEeCCCCCeeECCCCCEEEEEEECCCcc
Confidence            579999999999999999999999999999999999999987553

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.64  E-value=7.7e-17  Score=110.36  Aligned_cols=42  Identities=29%  Similarity=0.519  Sum_probs=40.1

Q ss_pred             cccCCeeEEEEEEeCCEEEEcCCCCeeeCCCCCccceeeccc
Q 031974            2 KVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE   43 (150)
Q Consensus         2 ~~Lp~G~~~yKFiVDG~W~~d~~~p~~~d~~G~~nN~i~v~~   43 (150)
                      +.|++|.|+|||+|||+|++|++.|++.|+.|++||+|+|++
T Consensus        46 l~l~~G~y~YKFiVDG~w~~d~~~p~~~d~~G~~nnvi~V~~   87 (87)
T d2qlvb1          46 LRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVNYIEVRQ   87 (87)
T ss_dssp             EEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEEEEEECC
T ss_pred             EeCCCCCEEEEEEECCcEEcCCCCCeeECCCCCEeEEEEEEC
Confidence            579999999999999999999999999999999999999974

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=93.98  E-value=0.016  Score=38.79  Aligned_cols=24  Identities=25%  Similarity=0.343  Sum_probs=19.2

Q ss_pred             ccCCeeEEEEEEeCCEEEEcCCCCe
Q 031974            3 VLPSGVYQYRFLVDGLWKYAPDLPS   27 (150)
Q Consensus         3 ~Lp~G~~~yKFiVDG~W~~d~~~p~   27 (150)
                      .+.+|.+ |||.|||+|+-||....
T Consensus        59 ~~~~G~~-Y~y~vdg~~~~DPyar~   82 (97)
T d2bhua1          59 PVGPGAR-YLFVLDGVPTPDPYARF   82 (97)
T ss_dssp             SCCTTCE-EEEEETTEEECCTTCSC
T ss_pred             CCCCCCE-EEEEECCeEccCCchhc
Confidence            4667875 99999999998877544

>d2igda_ d.15.7.1 (A:) Immunoglobulin-binding protein G, different constituent domains {Streptococcus sp., group G [TaxId: 1306]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Immunoglobulin-binding domains
family: Immunoglobulin-binding domains
domain: Immunoglobulin-binding protein G, different constituent domains
species: Streptococcus sp., group G [TaxId: 1306]

Probab=83.44  E-value=0.28  Score=30.00  Aligned_cols=14  Identities=36%  Similarity=0.826  Sum_probs=12.0

Q ss_pred             eCCEEEEcCCCCee
Q 031974           15 VDGLWKYAPDLPST   28 (150)
Q Consensus        15 VDG~W~~d~~~p~~   28 (150)
                      |||+|.+|+.-.+-
T Consensus        44 VdG~WtyddatkTF   57 (61)
T d2igda_          44 VDGVWTYDDATKTF   57 (61)
T ss_dssp             CCCEEEEETTTTEE
T ss_pred             CCceEEeccceeeE
Confidence            89999999988753

>d1mhxa_ d.15.7.1 (A:) Immunoglobulin-binding protein G, different constituent domains {Streptococcus sp., group G [TaxId: 1306]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Immunoglobulin-binding domains
family: Immunoglobulin-binding domains
domain: Immunoglobulin-binding protein G, different constituent domains
species: Streptococcus sp., group G [TaxId: 1306]

Probab=81.31  E-value=0.36  Score=29.76  Aligned_cols=14  Identities=36%  Similarity=0.719  Sum_probs=12.1

Q ss_pred             eCCEEEEcCCCCee
Q 031974           15 VDGLWKYAPDLPST   28 (150)
Q Consensus        15 VDG~W~~d~~~p~~   28 (150)
                      |||+|.+|+.-.+-
T Consensus        48 VdG~WtyddatkTF   61 (65)
T d1mhxa_          48 VDGEWTYDDAAKTF   61 (65)
T ss_dssp             CCSEEEEETTTTEE
T ss_pred             CCceEEecccceeE
Confidence            89999999988753