Citrus Sinensis ID: 031979

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MSTVRLPTSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEcccccHHHHHHHHccccccccccccccccccEEEEEEEEEccccccccHHHHHccEEEEEEcEEcccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccEEcccHHHHcccccccccccccccccccccccHHHHcccccccccEEEEEEEEEEEEccccEEEEEEEEccccHHHHHHHHccccccccccccccccEEEEEEccEEccccccccHHHHHccEEEccccEEcccEEEEcccHHHcH
Coil and Loop (DISEMBL)
mstvrlptsclfqaaprskkfslvkspaslgstrsvSKAFGLKCSSFKASAMAVYKVKligpngeenefdapddayiidsaedtgmelpyscragacstcagqmvsgsvdqsdgsflddkqmEKGFVLTCVAyptsdcviythkesely
Flexible Loop (DISEMBL)
mstvrlptsclfqaaprskkfslvkspaslgstrsvskaFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY
Low Complexity Region (SEG)
MSTVRLPTSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY
Disordered region (IsUnstruct)
**************************************AFGLKCSSFKASAMAVYKVKLIGPN********PDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMV***************QMEKGFVLTCVAYPTSDCVIYTH******
Disordered Region (DISOPRED)
*****************************************************VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY
Disordered Region (DISEMBL)
MSTVRLPTSCLFQAAPRSKKFSLV************SKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY
Disordered Region (DISPRO)
*****LP************************************CSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKE****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTVRLPTSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
Q9ZQG8	155	Ferredoxin-3, chloroplast	yes	no	1.0	0.961	0.606	4e-50
P27788	152	Ferredoxin-3, chloroplast	N/A	no	1.0	0.980	0.651	3e-49
P94044	155	Ferredoxin-6, chloroplast	N/A	no	0.953	0.916	0.537	8e-41
P14937	98	Ferredoxin, root R-B2 OS=	N/A	no	0.651	0.989	0.752	1e-40
P14936	98	Ferredoxin, root R-B1 OS=	N/A	no	0.651	0.989	0.742	1e-39
P09911	149	Ferredoxin-1, chloroplast	N/A	no	0.939	0.939	0.558	9e-38
O04683	148	Ferredoxin-1, chloroplast	N/A	no	0.939	0.945	0.520	5e-36
P00252	99	Ferredoxin-1 OS=Nostoc mu	N/A	no	0.644	0.969	0.708	3e-35
P81372	97	Ferredoxin-A OS=Alocasia	N/A	no	0.637	0.979	0.697	3e-35
P00248	99	Ferredoxin OS=Mastigoclad	N/A	no	0.657	0.989	0.686	6e-35

>sp|Q9ZQG8|FER3_ARATH Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1

 Score =  196 bits (498), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 94/155 (60%), Positives = 128/155 (82%), Gaps = 6/155 (3%)

Query: 1   MSTVRLPTSCLFQAAPRSKKFS-LVKSPA---SLGSTRSVSKAFGLKCS--SFKASAMAV 54
           M+TVR+ ++ + +A  RS+  + L+ + +   S+GST+ VS++FGLKCS  S  A+  AV
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 55  YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG 114
           YKVKL+GP+G+E+EF+  DD YI+D+AE+ G++LPYSCRAGACSTCAGQ+VSG+VDQSDG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 115 SFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SFL+D  +EKG+VLTCVAYP SDCVI+THKE+EL+
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
Arabidopsis thaliana (taxid: 3702)

>sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1

 Score =  193 bits (490), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 99/152 (65%), Positives = 115/152 (75%), Gaps = 3/152 (1%)

Query: 1   MSTVRLPTSCLFQAAPRSKKFS--LVKSPASLGSTRSVSKAFGLKCSS-FKASAMAVYKV 57
           MST    TSC      R+ + S   VKSP+SL     V+K   LK S     SAMAVYKV
Sbjct: 1   MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKV 60

Query: 58  KLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFL 117
           KL+GP GEE+EFDAPDDAYI+D+AE  G+ELPYSCRAGACSTCAG++ SGSVDQSDGSFL
Sbjct: 61  KLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFL 120

Query: 118 DDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           DD Q E+G+VLTCV+YP SDCVI+THKE +LY
Sbjct: 121 DDGQQEEGYVLTCVSYPKSDCVIHTHKEGDLY 152

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Zea mays (taxid: 4577)

>sp|P94044|FER6_MAIZE Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1

 Score =  165 bits (418), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 87/162 (53%), Positives = 115/162 (70%), Gaps = 20/162 (12%)

Query: 1   MSTV---RLPTSCLFQAAPRSK---KFSLVKSPAS-----LGSTRSVSKAFGLKCSS-FK 48
           MST    RLP       APRS     +    +PA+      G  R  ++A G + SS F 
Sbjct: 1   MSTATAPRLP-------APRSGASYHYQTTAAPAANTLSFAGHARQAARASGPRLSSRFV 53

Query: 49  ASAMAV-YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSG 107
           ASA AV +KVKL+GP+G E+EF+APDD YI+++AE  G+ELP+SCRAG+CSTCAG+M +G
Sbjct: 54  ASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAG 113

Query: 108 SVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
            VDQS+GSFLDD QM +G++LTC++YP +DCVI+THKE +LY
Sbjct: 114 EVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDLY 155

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Zea mays (taxid: 4577)

>sp|P14937|FER2_RAPSA Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1

 Score =  164 bits (416), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 73/97 (75%), Positives = 86/97 (88%)

Query: 53  AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
           AVYKVKLIGP GEENEF+  DD +I+D+AE+ G++LPYSCRAGACSTCAGQ+V G VDQS
Sbjct: 2   AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQS 61

Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           +GSFL+D   EKGFVLTCVAYP SDCVI+THKE+EL+
Sbjct: 62  EGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETELF 98

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Raphanus sativus (taxid: 3726)

>sp|P14936|FER1_RAPSA Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1

 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 85/97 (87%)

Query: 53  AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
           AVYKVKLIGP+G+ENEFD PDD YI+D+AE+ G++LPYSCRAGACSTCAG++  G VDQS
Sbjct: 2   AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQS 61

Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           DGSFL+D   EKG+VLTCVAYP SD VI+THKE EL+
Sbjct: 62  DGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEELF 98

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Raphanus sativus (taxid: 3726)

>sp|P09911|FER1_PEA Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2

 Score =  155 bits (392), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 81/145 (55%), Positives = 103/145 (71%), Gaps = 5/145 (3%)

Query: 8   TSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAF-GLKCSSFK---ASAMAVYKVKLIGPN 63
           T  L+  A  +        P S+ +T++ S  F GLK S  +   A AMA YKVKL+ P+
Sbjct: 4   TPALYGTAVSTSFLRTQPMPMSVTTTKAFSNGFLGLKTSLKRGDLAVAMASYKVKLVTPD 63

Query: 64  GEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQME 123
           G + EF+ P D YI+D AE+ G++LPYSCRAG+CS+CAG++V G VDQSDGSFLDD+Q+E
Sbjct: 64  GTQ-EFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIE 122

Query: 124 KGFVLTCVAYPTSDCVIYTHKESEL 148
            GFVLTCVAYPTSD VI THKE +L
Sbjct: 123 AGFVLTCVAYPTSDVVIETHKEEDL 147

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Pisum sativum (taxid: 3888)

>sp|O04683|FER1_MESCR Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1

 Score =  149 bits (377), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 101/144 (70%), Gaps = 4/144 (2%)

Query: 8   TSCLFQAAPRSKKFSLVKSPASLGSTRSVSKA-FGLKCSSFKA--SAMAVYKVKLIGPNG 64
           T+     A  S  F+    P +     +V +A FGLK S+ +   +AMA YKV L+ P G
Sbjct: 4   TTAALSGATMSTAFAPKTPPMTAALPTNVGRALFGLKSSASRGRVTAMAAYKVTLVTPEG 63

Query: 65  EENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEK 124
           ++ E + PDD YI+D+AE+ G++LPYSCRAG+CS+CAG++ SGSV+Q DGSFLDD Q+++
Sbjct: 64  KQ-ELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKE 122

Query: 125 GFVLTCVAYPTSDCVIYTHKESEL 148
           G+VLTCVAYPT D  I THKE EL
Sbjct: 123 GWVLTCVAYPTGDVTIETHKEEEL 146

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|P00252|FER1_NOSMU Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 78/96 (81%)

Query: 54  VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSD 113
           VYKV L+   G E   D PDD YI+D AED G++LPYSCRAGACSTCAG++VSG+VDQSD
Sbjct: 4   VYKVTLVDQEGTETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSD 63

Query: 114 GSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
            SFLDD Q+EKG+VLTCVAYPTSD  I THKE +LY
Sbjct: 64  QSFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDLY 99

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Nostoc muscorum (taxid: 1179)

>sp|P81372|FERA_ALOMA Ferredoxin-A OS=Alocasia macrorrhizos PE=1 SV=1

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/96 (69%), Positives = 82/96 (85%), Gaps = 1/96 (1%)

Query: 53  AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
           A YKVKL+ P G++ EFD PDD YI+D AE+ G++LPYSCRAG+CS+CAG++  G VDQS
Sbjct: 1   ATYKVKLVTPQGQQ-EFDCPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKQGEVDQS 59

Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
           DGSFLDD+QME+G+VLTCVA+PTSD VI THKE EL
Sbjct: 60  DGSFLDDEQMEQGWVLTCVAFPTSDVVIETHKEEEL 95

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Alocasia macrorrhizos (taxid: 4456)

>sp|P00248|FER_MASLA Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2

 Score =  145 bits (367), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 68/99 (68%), Positives = 80/99 (80%), Gaps = 1/99 (1%)

Query: 52  MAVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVD 110
           MA YKV LI    G     + PDD YI+D+AE+ G++LPYSCRAGACSTCAG+++SG+VD
Sbjct: 1   MATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVD 60

Query: 111 QSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           QSD SFLDD Q+E G+VLTCVAYPTSDCVI THKE ELY
Sbjct: 61  QSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEELY 99

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Mastigocladus laminosus (taxid: 83541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
296080982	168	unnamed protein product [Vitis vinifera]	1.0	0.886	0.765	5e-62
359479516	154	PREDICTED: ferredoxin-3, chloroplastic-l	1.0	0.967	0.748	1e-61
359486978	351	PREDICTED: uncharacterized protein LOC10	1.0	0.424	0.765	3e-61
147819070	151	hypothetical protein VITISV_038770 [Viti	1.0	0.986	0.748	4e-61
224100605	155	predicted protein [Populus trichocarpa]	1.0	0.961	0.735	3e-60
224113441	155	predicted protein [Populus trichocarpa]	1.0	0.961	0.741	1e-59
449446283	149	PREDICTED: ferredoxin-3, chloroplastic-l	1.0	1.0	0.744	2e-59
255549394	157	Ferredoxin-3, chloroplast precursor, put	1.0	0.949	0.713	5e-59
255565639	150	Ferredoxin-3, chloroplast precursor, put	0.986	0.98	0.72	2e-58
346473922	160	hypothetical protein [Amblyomma maculatu	1.0	0.931	0.736	3e-58

>gi|296080982|emb|CBI18580.3| unnamed protein product [Vitis vinifera]

 Score =  242 bits (617), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 114/149 (76%), Positives = 131/149 (87%)

Query: 1   MSTVRLPTSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAVYKVKLI 60
           MSTV LPT  LF++AP  K  +L++SP SLGS RS SKAFGLK SSF+ SAMAVYKVKLI
Sbjct: 20  MSTVSLPTPFLFKSAPLKKSCALIRSPGSLGSVRSTSKAFGLKSSSFRVSAMAVYKVKLI 79

Query: 61  GPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDK 120
           GP+GEE+EFDAPDD YI+DSAE+ G+ELPYSCRAGACSTCAGQMV GSVDQSDGSFLD+K
Sbjct: 80  GPDGEESEFDAPDDVYILDSAENAGLELPYSCRAGACSTCAGQMVLGSVDQSDGSFLDEK 139

Query: 121 QMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           QM+ G+VLTCV+YPTSD VI+THKE +LY
Sbjct: 140 QMDNGYVLTCVSYPTSDSVIHTHKEGDLY 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479516|ref|XP_002275749.2| PREDICTED: ferredoxin-3, chloroplastic-like isoform 1 [Vitis vinifera]

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 137/151 (90%), Gaps = 2/151 (1%)

Query: 1   MSTVRLPTSCLFQAAPRSKKFS-LVKSPASLGSTRSVSKAFGLKCSS-FKASAMAVYKVK 58
           MSTV LPT C+F++A +++  S  ++SP+SLGS +S+SKAFGLK S  F+A+AMAVYK+K
Sbjct: 4   MSTVNLPTHCMFRSATQNRIASAFIRSPSSLGSVKSISKAFGLKSSPCFRATAMAVYKIK 63

Query: 59  LIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLD 118
           LIGP GEE+EFDAPDDAYI+DSAE+ G+ELPYSCRAGACSTCAGQMVSGSVDQSDGSFLD
Sbjct: 64  LIGPEGEEHEFDAPDDAYILDSAENAGVELPYSCRAGACSTCAGQMVSGSVDQSDGSFLD 123

Query: 119 DKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           DKQMEKG++LTC++YPTSDCVI+THKE +LY
Sbjct: 124 DKQMEKGYLLTCISYPTSDCVIHTHKEGDLY 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486978|ref|XP_002267623.2| PREDICTED: uncharacterized protein LOC100266537 [Vitis vinifera]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 114/149 (76%), Positives = 131/149 (87%)

Query: 1   MSTVRLPTSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAVYKVKLI 60
           MSTV LPT  LF++AP  K  +L++SP SLGS RS SKAFGLK SSF+ SAMAVYKVKLI
Sbjct: 203 MSTVSLPTPFLFKSAPLKKSCALIRSPGSLGSVRSTSKAFGLKSSSFRVSAMAVYKVKLI 262

Query: 61  GPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDK 120
           GP+GEE+EFDAPDD YI+DSAE+ G+ELPYSCRAGACSTCAGQMV GSVDQSDGSFLD+K
Sbjct: 263 GPDGEESEFDAPDDVYILDSAENAGLELPYSCRAGACSTCAGQMVLGSVDQSDGSFLDEK 322

Query: 121 QMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           QM+ G+VLTCV+YPTSD VI+THKE +LY
Sbjct: 323 QMDNGYVLTCVSYPTSDSVIHTHKEGDLY 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819070|emb|CAN74125.1| hypothetical protein VITISV_038770 [Vitis vinifera]

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 136/151 (90%), Gaps = 2/151 (1%)

Query: 1   MSTVRLPTSCLFQAAPRSKKFS-LVKSPASLGSTRSVSKAFGLKCSS-FKASAMAVYKVK 58
           MSTV LPT C+F++A ++   S  ++SP+SLGS +S+SKAFGLK S  F+A+AMAVYK+K
Sbjct: 1   MSTVNLPTHCMFRSATQNXIASAFIRSPSSLGSVKSISKAFGLKSSPCFRATAMAVYKIK 60

Query: 59  LIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLD 118
           LIGP GEE+EFDAPDDAYI+DSAE+ G+ELPYSCRAGACSTCAGQMVSGSVDQSDGSFLD
Sbjct: 61  LIGPEGEEHEFDAPDDAYILDSAENAGVELPYSCRAGACSTCAGQMVSGSVDQSDGSFLD 120

Query: 119 DKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           DKQMEKG++LTC++YPTSDCVI+THKE +LY
Sbjct: 121 DKQMEKGYLLTCISYPTSDCVIHTHKEGDLY 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100605|ref|XP_002311943.1| predicted protein [Populus trichocarpa] gi|222851763|gb|EEE89310.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 114/155 (73%), Positives = 133/155 (85%), Gaps = 6/155 (3%)

Query: 1   MSTVRLPTSCLFQAAPR------SKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAV 54
           MSTVRLPT+C+ ++AP       SK  +L+KSP +LGS R+VSKAFGLK SSFK SAMAV
Sbjct: 1   MSTVRLPTTCMIRSAPPRKVASPSKSCALIKSPGALGSVRNVSKAFGLKSSSFKVSAMAV 60

Query: 55  YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG 114
           YK KLI P+G E+EFDAP D YI+DSAE+ G+ELPYSCRAGACSTCAG +VSGSVDQSDG
Sbjct: 61  YKAKLIAPDGCEHEFDAPGDTYILDSAENAGVELPYSCRAGACSTCAGMLVSGSVDQSDG 120

Query: 115 SFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SFLD+KQMEKG+VLTCV+YPTSDCVI+THKE +LY
Sbjct: 121 SFLDEKQMEKGYVLTCVSYPTSDCVIHTHKEEDLY 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113441|ref|XP_002316497.1| predicted protein [Populus trichocarpa] gi|118487568|gb|ABK95610.1| unknown [Populus trichocarpa] gi|222865537|gb|EEF02668.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/155 (74%), Positives = 132/155 (85%), Gaps = 6/155 (3%)

Query: 1   MSTVRLPTSCLFQAAPRSKKFS------LVKSPASLGSTRSVSKAFGLKCSSFKASAMAV 54
           MST RLPT+C+ ++AP SK  S      L+KSP +LGS  SVSKAFGLK SSFK SAMAV
Sbjct: 1   MSTARLPTTCMIRSAPPSKVASPSRSCALIKSPGALGSAMSVSKAFGLKSSSFKVSAMAV 60

Query: 55  YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG 114
           YKVKLI P+G E+EFDAPDD YI+DSAE+ G+ELPYSCRAGACSTCAG MVSGSVDQSDG
Sbjct: 61  YKVKLIMPDGCEHEFDAPDDTYILDSAENAGVELPYSCRAGACSTCAGMMVSGSVDQSDG 120

Query: 115 SFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SFLD+KQMEKG+VLTC++YPTSD VI+THKE +LY
Sbjct: 121 SFLDEKQMEKGYVLTCISYPTSDSVIHTHKEEDLY 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446283|ref|XP_004140901.1| PREDICTED: ferredoxin-3, chloroplastic-like isoform 1 [Cucumis sativus] gi|449446285|ref|XP_004140902.1| PREDICTED: ferredoxin-3, chloroplastic-like isoform 2 [Cucumis sativus] gi|449494152|ref|XP_004159464.1| PREDICTED: ferredoxin-3, chloroplastic-like isoform 1 [Cucumis sativus] gi|449494156|ref|XP_004159465.1| PREDICTED: ferredoxin-3, chloroplastic-like isoform 2 [Cucumis sativus]

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 111/149 (74%), Positives = 129/149 (86%)

Query: 1   MSTVRLPTSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAVYKVKLI 60
           MSTV LPTS L +     +  +LV+ P+SL S RSVS++FGLK S FK SAMA YKVKLI
Sbjct: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60

Query: 61  GPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDK 120
           GP+GEENEFDAPDDAYI+DSAE+ G++LPYSCRAGACSTCAGQ+VSG+VDQ+DGSFLDDK
Sbjct: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 121 QMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           QMEKG+VLTCVAYP SDCVI+THKE +LY
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549394|ref|XP_002515750.1| Ferredoxin-3, chloroplast precursor, putative [Ricinus communis] gi|223545078|gb|EEF46589.1| Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]

 Score =  232 bits (591), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 112/157 (71%), Positives = 133/157 (84%), Gaps = 8/157 (5%)

Query: 1   MSTVRLPTSCLFQAAPRSKKFS-------LVKSPASLGSTRSVSKAFGLKCSSFKASAMA 53
           MSTVRLPTSCL ++ P S K +       L+KS  S GS ++VSKAFGLK SSF+ SAM+
Sbjct: 1   MSTVRLPTSCLVRSVPLSSKAASMDKSCALIKSSCSFGSVKNVSKAFGLKSSSFRVSAMS 60

Query: 54  -VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
            VYKVKLIGPNGEE+EFDAPDD Y++D+AE+ G+ELPYSCRAGACSTCAGQ+ SGSVDQS
Sbjct: 61  KVYKVKLIGPNGEESEFDAPDDTYVLDAAENAGVELPYSCRAGACSTCAGQLASGSVDQS 120

Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           DGSFL D+QMEKG+VLTC++YPTSDCVI+THKE +LY
Sbjct: 121 DGSFLSDEQMEKGYVLTCISYPTSDCVIHTHKEGDLY 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565639|ref|XP_002523809.1| Ferredoxin-3, chloroplast precursor, putative [Ricinus communis] gi|223536897|gb|EEF38535.1| Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 108/150 (72%), Positives = 136/150 (90%), Gaps = 3/150 (2%)

Query: 1   MSTVRLPTSCLFQAAPRSKKFS-LVKSPASLGSTRSVSKAFGLKCS-SFKASAMAVYKVK 58
           M+TVR+P+ C+ + AP+S+  S ++KSP+SLGS RS+SK+FGLKCS +FKAS MAVYKVK
Sbjct: 1   MATVRVPSQCMLKTAPKSQLTSTIIKSPSSLGSVRSISKSFGLKCSQNFKAS-MAVYKVK 59

Query: 59  LIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLD 118
           LIGP+GEENEF+A DD YI+D+AE+ G+ELPYSCRAGACSTCAG+MVSG+VDQSDGSFLD
Sbjct: 60  LIGPDGEENEFEASDDTYILDAAENAGVELPYSCRAGACSTCAGKMVSGAVDQSDGSFLD 119

Query: 119 DKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
           + QME+G++LTCV+YPT+DCVI+THKE EL
Sbjct: 120 ENQMEEGYLLTCVSYPTADCVIHTHKEEEL 149

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346473922|gb|AEO36805.1| hypothetical protein [Amblyomma maculatum]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 112/152 (73%), Positives = 131/152 (86%), Gaps = 3/152 (1%)

Query: 1   MSTVRLPTSCLFQAAPRSKKFS--LVKSPASLGSTRSVSKAFGLKCS-SFKASAMAVYKV 57
           M T  LPT C F  + +++K S  LVKSPASLGS +S SKAFG K S SFK +AMAVYKV
Sbjct: 1   MLTATLPTVCTFHCSIKTQKPSSALVKSPASLGSLKSTSKAFGTKVSNSFKVTAMAVYKV 60

Query: 58  KLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFL 117
           KL+GP G+E+EF+APDDAYI+DSAED G+ELPYSCRAGACSTCAGQMVSGSVDQSDGSFL
Sbjct: 61  KLVGPEGDEHEFEAPDDAYILDSAEDAGVELPYSCRAGACSTCAGQMVSGSVDQSDGSFL 120

Query: 118 DDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           DD QMEKG+VLTC++YP +DCVI+THKE++LY
Sbjct: 121 DDGQMEKGYVLTCISYPKADCVIHTHKEADLY 152

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
TAIR|locus:2038593	155	FD3 "ferredoxin 3" [Arabidopsi	1.0	0.961	0.606	8.8e-47
UNIPROTKB|P09911	149	PETF "Ferredoxin-1, chloroplas	0.939	0.939	0.558	8e-37
TAIR|locus:2197349	148	FD1 "ferredoxin 1" [Arabidopsi	0.825	0.831	0.565	1.3e-34
UNIPROTKB|P27320	97	petF "Ferredoxin-1" [Synechocy	0.651	1.0	0.683	1.2e-33
TAIR|locus:2206061	148	FED A [Arabidopsis thaliana (t	0.818	0.824	0.568	1.5e-33
UNIPROTKB|P0A3C9	98	petF1 "Ferredoxin-1" [Thermosy	0.657	1.0	0.663	2e-33
UNIPROTKB|P0A3C8	99	petF "Ferredoxin-1" [Nostoc sp	0.657	0.989	0.666	1.4e-32
UNIPROTKB|P83525	97	P83525 "Ferredoxin" [Scopolia	0.637	0.979	0.687	1.4e-32
UNIPROTKB|P83520	97	P83520 "Ferredoxin" [Brugmansi	0.637	0.979	0.687	1.8e-32
UNIPROTKB|P83522	97	P83522 "Ferredoxin" [Hordeum v	0.637	0.979	0.677	2.3e-32

TAIR|locus:2038593 FD3 "ferredoxin 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 94/155 (60%), Positives = 128/155 (82%)

Query:     1 MSTVRLPTSCLFQAAPRSKKFS-LVKSPA---SLGSTRSVSKAFGLKCS--SFKASAMAV 54
             M+TVR+ ++ + +A  RS+  + L+ + +   S+GST+ VS++FGLKCS  S  A+  AV
Sbjct:     1 MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query:    55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG 114
             YKVKL+GP+G+E+EF+  DD YI+D+AE+ G++LPYSCRAGACSTCAGQ+VSG+VDQSDG
Sbjct:    61 YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query:   115 SFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
             SFL+D  +EKG+VLTCVAYP SDCVI+THKE+EL+
Sbjct:   121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155

GO:0009055 "electron carrier activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0022900 "electron transport chain" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0009536 "plastid" evidence=IDA

GO:0009688 "abscisic acid biosynthetic process" evidence=RCA

UNIPROTKB|P09911 PETF "Ferredoxin-1, chloroplastic" [Pisum sativum (taxid:3888)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 81/145 (55%), Positives = 103/145 (71%)

Query:     8 TSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAF-GLKCSSFK---ASAMAVYKVKLIGPN 63
             T  L+  A  +        P S+ +T++ S  F GLK S  +   A AMA YKVKL+ P+
Sbjct:     4 TPALYGTAVSTSFLRTQPMPMSVTTTKAFSNGFLGLKTSLKRGDLAVAMASYKVKLVTPD 63

Query:    64 GEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQME 123
             G + EF+ P D YI+D AE+ G++LPYSCRAG+CS+CAG++V G VDQSDGSFLDD+Q+E
Sbjct:    64 GTQ-EFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIE 122

Query:   124 KGFVLTCVAYPTSDCVIYTHKESEL 148
              GFVLTCVAYPTSD VI THKE +L
Sbjct:   123 AGFVLTCVAYPTSDVVIETHKEEDL 147

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2197349 FD1 "ferredoxin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 73/129 (56%), Positives = 97/129 (75%)

Query:    25 KSPASLGST--RSVSKAFGLKCSSFKA---SAMAVYKVKLIGPNGEENEFDAPDDAYIID 79
             ++P SL S    +    FGLK S+ +    +AMA YKVK I P GE+ E +  +D Y++D
Sbjct:    20 QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQ-EVECEEDVYVLD 78

Query:    80 SAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCV 139
             +AE+ G++LPYSCRAG+CS+CAG++VSGS+DQSD SFLDD+QM +G+VLTCVAYPTSD V
Sbjct:    79 AAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVV 138

Query:   140 IYTHKESEL 148
             I THKE  +
Sbjct:   139 IETHKEEAI 147

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0022900 "electron transport chain" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009688 "abscisic acid biosynthetic process" evidence=RCA

UNIPROTKB|P27320 petF "Ferredoxin-1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 67/98 (68%), Positives = 81/98 (82%)

Query:    52 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
             MA Y VKLI P+GE +  +  DD YI+D+AE+ G++LPYSCRAGACSTCAG++ +GSVDQ
Sbjct:     1 MASYTVKLITPDGESS-IECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQ 59

Query:   112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
             SD SFLDD Q+E G+VLTCVAYPTSDC I THKE +LY
Sbjct:    60 SDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDLY 97

GO:0005515 "protein binding" evidence=IPI

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IDA

TAIR|locus:2206061 FED A [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 75/132 (56%), Positives = 97/132 (73%)

Query:    25 KSPASLGSTRSVSKA-----FGLKCSSFKA---SAMAVYKVKLIGPNGEENEFDAPDDAY 76
             +SPA + S RS+  A     FGLK  + +    +AMA YKVK I P GE  E +  DD Y
Sbjct:    18 RSPAPI-SLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGEL-EVECDDDVY 75

Query:    77 IIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTS 136
             ++D+AE+ G++LPYSCRAG+CS+CAG++VSGSVDQSD SFLDD+Q+ +GFVLTC AYPTS
Sbjct:    76 VLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTS 135

Query:   137 DCVIYTHKESEL 148
             D  I THKE ++
Sbjct:   136 DVTIETHKEEDI 147

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0022900 "electron transport chain" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP;TAS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=TAS

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

UNIPROTKB|P0A3C9 petF1 "Ferredoxin-1" [Thermosynechococcus elongatus BP-1 (taxid:197221)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 65/98 (66%), Positives = 79/98 (80%)

Query:    52 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
             MA YKV L+ P+G E   D P+D YI+D AE+ G++LP+SCRAGACSTCAG+++ G VDQ
Sbjct:     1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQ 60

Query:   112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
             SD SFLDD Q+EKGFVLTCVAYP SDC I T++E ELY
Sbjct:    61 SDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEELY 98

GO:0005515 "protein binding" evidence=IPI

GO:0009055 "electron carrier activity" evidence=IDA

UNIPROTKB|P0A3C8 petF "Ferredoxin-1" [Nostoc sp. PCC 7119 (taxid:1168)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 66/99 (66%), Positives = 81/99 (81%)

Query:    52 MAVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVD 110
             MA +KV LI    G ++E + PDD YI+D+AE+ G +LP+SCRAGACSTCAG++VSG+VD
Sbjct:     1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVD 60

Query:   111 QSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
             QSD SFLDD Q+E G+VLTCVAYPTSD VI THKE +LY
Sbjct:    61 QSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 99

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P83525 P83525 "Ferredoxin" [Scopolia japonica (taxid:221162)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 66/96 (68%), Positives = 78/96 (81%)

Query:    53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
             A YKVKL+ P+G   EFD PDD YI+D AE+ G ELPYSCRAG+CS+CAG++ +G+VDQS
Sbjct:     1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQS 59

Query:   113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
             DG+FLDD QM  GFVLTCVAYP SD +I THKE EL
Sbjct:    60 DGNFLDDDQMADGFVLTCVAYPQSDVIIETHKEEEL 95

GO:0006124 "ferredoxin metabolic process" evidence=TAS

GO:0008198 "ferrous iron binding" evidence=TAS

GO:0009055 "electron carrier activity" evidence=TAS

GO:0009507 "chloroplast" evidence=TAS

UNIPROTKB|P83520 P83520 "Ferredoxin" [Brugmansia arborea (taxid:41689)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 66/96 (68%), Positives = 77/96 (80%)

Query:    53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
             A YKVKL+ P+G   EFD PDD YI+D AE+ G ELPYSCRAG+CS+CAG++ +G+VDQS
Sbjct:     1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQS 59

Query:   113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
             DG+FLDD QM  GFVLTCVAYP SD  I THKE EL
Sbjct:    60 DGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95

GO:0006124 "ferredoxin metabolic process" evidence=TAS

GO:0008198 "ferrous iron binding" evidence=TAS

GO:0009055 "electron carrier activity" evidence=TAS

GO:0009507 "chloroplast" evidence=TAS

UNIPROTKB|P83522 P83522 "Ferredoxin" [Hordeum vulgare (taxid:4513)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 65/96 (67%), Positives = 78/96 (81%)

Query:    53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
             A YKVKL+ P GE  E + PDD YI+D AE+ G++LPYSCRAG+CS+CAG++VSG +DQS
Sbjct:     1 ATYKVKLVTPEGEV-ELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQS 59

Query:   113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
             D SFLDD QME+G+VLTC AYP SD VI THKE EL
Sbjct:    60 DQSFLDDDQMEEGWVLTCAAYPKSDVVIETHKEEEL 95

GO:0006124 "ferredoxin metabolic process" evidence=TAS

GO:0009055 "electron carrier activity" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P14937	FER2_RAPSA	No assigned EC number	0.7525	0.6510	0.9897	N/A	no
P14936	FER1_RAPSA	No assigned EC number	0.7422	0.6510	0.9897	N/A	no
P0A3D3	FER1_SYNP6	No assigned EC number	0.6565	0.6577	0.9898	yes	no
O04683	FER1_MESCR	No assigned EC number	0.5208	0.9395	0.9459	N/A	no
Q43517	FER1_SOLLC	No assigned EC number	0.5769	0.8389	0.8680	N/A	no
Q9ZTS2	FER_CAPAN	No assigned EC number	0.5859	0.8255	0.8541	N/A	no
P0A3D2	FER1_SYNE7	No assigned EC number	0.6565	0.6577	0.9898	yes	no
P27788	FER3_MAIZE	No assigned EC number	0.6513	1.0	0.9802	N/A	no
P27789	FER5_MAIZE	No assigned EC number	0.5507	0.8389	0.9259	N/A	no
P0A3C9	FER_THEEB	No assigned EC number	0.6632	0.6577	1.0	yes	no
P0A3C7	FER1_NOSS1	No assigned EC number	0.6666	0.6577	0.9898	yes	no
P00254	FER1_ANAVT	No assigned EC number	0.6666	0.6577	0.9898	yes	no
P00252	FER1_NOSMU	No assigned EC number	0.7083	0.6442	0.9696	N/A	no
Q9ZQG8	FER3_ARATH	No assigned EC number	0.6064	1.0	0.9612	yes	no
P09911	FER1_PEA	No assigned EC number	0.5586	0.9395	0.9395	N/A	no
P94044	FER6_MAIZE	No assigned EC number	0.5370	0.9530	0.9161	N/A	no
P31965	FER1_SYNP2	No assigned EC number	0.6836	0.6510	1.0	yes	no
O78510	FER_GUITH	No assigned EC number	0.6836	0.6510	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	149
TIGR02008	97	TIGR02008, fdx_plant, ferredoxin [2Fe-2S]	2e-56
CHL00134	99	CHL00134, petF, ferredoxin; Validated	5e-52
PTZ00038	191	PTZ00038, PTZ00038, ferredoxin; Provisional	9e-45
PLN03136	148	PLN03136, PLN03136, Ferredoxin; Provisional	8e-42
cd00207	84	cd00207, fer2, 2Fe-2S iron-sulfur cluster binding	2e-28
COG0633	102	COG0633, Fdx, Ferredoxin [Energy production and co	9e-21
PRK07609	339	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucosee	2e-20
pfam00111	77	pfam00111, Fer2, 2Fe-2S iron-sulfur cluster bindin	2e-19
TIGR02160	352	TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenas	4e-13
PRK05713	312	PRK05713, PRK05713, hypothetical protein; Provisio	8e-07
PRK11872	340	PRK11872, antC, anthranilate dioxygenase reductase	8e-07
PRK10684	332	PRK10684, PRK10684, HCP oxidoreductase, NADH-depen	3e-04

>gnl|CDD|233684 TIGR02008, fdx_plant, ferredoxin [2Fe-2S]

 Score =  171 bits (434), Expect = 2e-56
 Identities = 66/97 (68%), Positives = 79/97 (81%)

Query: 53  AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
           A YKV L+ P+G E   + PDD YI+D+AE+ G++LPYSCRAGACSTCAG++  G+VDQS
Sbjct: 1   ATYKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQS 60

Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           D SFLDD QME G+VLTCVAYPTSDC I THKE +LY
Sbjct: 61  DQSFLDDDQMEAGYVLTCVAYPTSDCTIETHKEEDLY 97

This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins. Length = 97

>gnl|CDD|177056 CHL00134, petF, ferredoxin; Validated

 Score =  159 bits (405), Expect = 5e-52
 Identities = 66/99 (66%), Positives = 78/99 (78%), Gaps = 1/99 (1%)

Query: 52  MAVYKVKLIG-PNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVD 110
           MA YKV L+    G +   D PDD YI+D+AE+ G++LPYSCRAGACSTCAG++  G+VD
Sbjct: 1   MATYKVTLLSEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVD 60

Query: 111 QSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           QSD SFLDD Q+E GFVLTCVAYPTSDC I TH+E ELY
Sbjct: 61  QSDQSFLDDDQLEAGFVLTCVAYPTSDCTILTHQEEELY 99

Length = 99

>gnl|CDD|240237 PTZ00038, PTZ00038, ferredoxin; Provisional

 Score =  144 bits (366), Expect = 9e-45
 Identities = 56/148 (37%), Positives = 81/148 (54%), Gaps = 8/148 (5%)

Query: 9   SCLFQAAPRS--KKFSLVKSPASLGSTRSVSKAF---GLKCSSFKASAM--AVYKVKLIG 61
           S  F ++  S  +        +   ++R  S           S  +       Y + L  
Sbjct: 43  SASFISSSASPNRASCYSLGNSKGNTSRPSSNGVTPGSSPVRSLLSLRRNPLFYNITLQT 102

Query: 62  PNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQ 121
           P+GE+   +  +D YI+D+AE  G+ELPYSCR G+CSTCA +++ G VD  D S+LDD+Q
Sbjct: 103 PDGEK-VIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQ 161

Query: 122 MEKGFVLTCVAYPTSDCVIYTHKESELY 149
           ++KG+ L C  YP SDC I THKE EL+
Sbjct: 162 LKKGYCLLCTCYPKSDCTIETHKEDELH 189

Length = 191

>gnl|CDD|178681 PLN03136, PLN03136, Ferredoxin; Provisional

 Score =  136 bits (342), Expect = 8e-42
 Identities = 73/129 (56%), Positives = 98/129 (75%), Gaps = 6/129 (4%)

Query: 25  KSPASLGSTRSVSKA--FGLKCSSFKA---SAMAVYKVKLIGPNGEENEFDAPDDAYIID 79
           ++P SL S  S +    FGLK S+ +    +AMA YKVK I P GE+ E +  +D Y++D
Sbjct: 20  QTPISLRSLPSANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQ-EVECEEDVYVLD 78

Query: 80  SAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCV 139
           +AE+ G++LPYSCRAG+CS+CAG++VSGS+DQSD SFLDD+Q+ +G+VLTCVAYPTSD V
Sbjct: 79  AAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVLTCVAYPTSDVV 138

Query: 140 IYTHKESEL 148
           I THKE  +
Sbjct: 139 IETHKEEAI 147

Length = 148

>gnl|CDD|238126 cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain

 Score = 99.8 bits (249), Expect = 2e-28
 Identities = 36/81 (44%), Positives = 51/81 (62%)

Query: 60  IGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD 119
           I   G   E + P+   ++D+A + G+++PYSCRAGAC TC  ++V G VDQSD S LD+
Sbjct: 3   INVPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDE 62

Query: 120 KQMEKGFVLTCVAYPTSDCVI 140
           ++ E G+VL C    T   VI
Sbjct: 63  EEAEGGYVLACQTRVTDGLVI 83

Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin. Length = 84

>gnl|CDD|223706 COG0633, Fdx, Ferredoxin [Energy production and conversion]

 Score = 80.6 bits (199), Expect = 9e-21
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 55  YKVKLIGPNGEENEFDA-PDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSG--SVDQ 111
            K+  +  +GE +  +A  +   ++++AE  G+ + Y+CR GAC TC  +++ G   V  
Sbjct: 2   PKIAFVTIDGEGDVTEAVNEGETLLEAAERNGIPIEYACRGGACGTCRVKVLEGFDEVSP 61

Query: 112 SDGS---FLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
            + S    LD   +E    L+C      D  I   +E E  
Sbjct: 62  PEESEEDLLDAAGLEGNSRLSCQCRVKGDLDIEVVEEPEYT 102

Length = 102

>gnl|CDD|181058 PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

 Score = 85.3 bits (212), Expect = 2e-20
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 68  EFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG--SFLDDKQMEKG 125
           +F A  D  I+D+A   G+ LPY C+ GAC +C G+++ G V+Q     S L  ++   G
Sbjct: 13  QFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAG 72

Query: 126 FVLTCVAYPTSDCVI 140
             LTC A P SD V+
Sbjct: 73  EALTCCAKPLSDLVL 87

Length = 339

>gnl|CDD|215725 pfam00111, Fer2, 2Fe-2S iron-sulfur cluster binding domain

 Score = 76.8 bits (189), Expect = 2e-19
 Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 62  PNGEENEFDAPDDAYII-DSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDK 120
            +G+    + PD    + D+AE+ G+++PYSCR G C TCA +++ G V QSD SFL+D 
Sbjct: 3   IDGKGVTIEVPDGETTLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGEV-QSDQSFLEDD 61

Query: 121 QMEKGF-VLTCVAYPT 135
           ++  G+ VL C  YP 
Sbjct: 62  ELAAGYVVLACQTYPK 77

Length = 77

>gnl|CDD|131215 TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenase/reductase, PaaK subunit

 Score = 64.8 bits (158), Expect = 4e-13
 Identities = 24/68 (35%), Positives = 41/68 (60%)

Query: 73  DDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVA 132
            D  ++D+A     +LP++C+ G C TC  +++ G VD      L+  +++ G+VLTC A
Sbjct: 281 RDESVLDAALRARPDLPFACKGGVCGTCRAKVLEGKVDMERNYALEPDEVDAGYVLTCQA 340

Query: 133 YPTSDCVI 140
           YP SD ++
Sbjct: 341 YPLSDKLV 348

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA [Energy metabolism, Other]. Length = 352

>gnl|CDD|235575 PRK05713, PRK05713, hypothetical protein; Provisional

 Score = 46.6 bits (111), Expect = 8e-07
 Identities = 19/65 (29%), Positives = 35/65 (53%)

Query: 66  ENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKG 125
           E  +  P  + ++D+    G+ +PYSCRAG+C  C  + + G  + +    L  ++ E+G
Sbjct: 8   ERRWSVPAGSNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQG 67

Query: 126 FVLTC 130
           + L C
Sbjct: 68  WRLAC 72

Length = 312

>gnl|CDD|183350 PRK11872, antC, anthranilate dioxygenase reductase; Provisional

 Score = 46.7 bits (111), Expect = 8e-07
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 2/96 (2%)

Query: 55  YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS-- 112
           +KV L   +G+   F    D  ++D+A   G+ LP  CR G C TC G+  SG   Q   
Sbjct: 3   HKVALSFADGKTLFFPVGKDELLLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQDYV 62

Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
           D   L ++ + +  +L C     SD   Y   +S L
Sbjct: 63  DEDALSERDLAQRKMLACQTRVKSDAAFYFDFDSSL 98

Length = 340

>gnl|CDD|236735 PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 92  CRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVI 140
           CRAG C  C  ++VSG    S    L   ++ +G+VL C  +P  D V+
Sbjct: 283 CRAGVCGCCKTKVVSGEYTVSSTMTLTPAEIAQGYVLACSCHPQGDLVL 331

Length = 332

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	99.96
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	99.95
CHL00134	99	petF ferredoxin; Validated	99.94
TIGR02008	97	fdx_plant ferredoxin [2Fe-2S]. This model represen	99.94
PLN03136	148	Ferredoxin; Provisional	99.92
PTZ00038	191	ferredoxin; Provisional	99.91
PRK10713	84	2Fe-2S ferredoxin YfaE; Provisional	99.9
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	99.83
cd00207	84	fer2 2Fe-2S iron-sulfur cluster binding domain. Ir	99.82
COG0633	102	Fdx Ferredoxin [Energy production and conversion]	99.82
PLN02593	117	adrenodoxin-like ferredoxin protein	99.81
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	99.81
PRK05713	312	hypothetical protein; Provisional	99.8
TIGR02007	110	fdx_isc ferredoxin, 2Fe-2S type, ISC system. This	99.79
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	99.77
PTZ00490	143	Ferredoxin superfamily; Provisional	99.76
PF00111	78	Fer2: 2Fe-2S iron-sulfur cluster binding domain; I	99.75
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	99.71
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	99.61
COG3894	614	Uncharacterized metal-binding protein [General fun	99.51
KOG3309	159	consensus Ferredoxin [Energy production and conver	99.2
PRK07569	234	bidirectional hydrogenase complex protein HoxU; Va	99.17
PF13510	82	Fer2_4: 2Fe-2S iron-sulfur cluster binding domain;	99.14
PRK08166	847	NADH dehydrogenase subunit G; Validated	98.98
PTZ00305	297	NADH:ubiquinone oxidoreductase; Provisional	98.87
COG1018	266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	98.83
PRK06259	486	succinate dehydrogenase/fumarate reductase iron-su	98.73
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.57
PRK09130	687	NADH dehydrogenase subunit G; Validated	98.49
COG1034	693	NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreduc	98.45
TIGR01973	603	NuoG NADH-quinone oxidoreductase, chain G. This mo	98.34
PRK07860	797	NADH dehydrogenase subunit G; Validated	98.3
PRK08493	819	NADH dehydrogenase subunit G; Validated	98.29
PRK09129	776	NADH dehydrogenase subunit G; Validated	98.27
PF13085	110	Fer2_3: 2Fe-2S iron-sulfur cluster binding domain;	98.26
PRK13552	239	frdB fumarate reductase iron-sulfur subunit; Provi	98.23
PRK08640	249	sdhB succinate dehydrogenase iron-sulfur subunit;	98.23
PRK09908	159	xanthine dehydrogenase subunit XdhC; Provisional	98.17
PRK11433	217	aldehyde oxidoreductase 2Fe-2S subunit; Provisiona	98.15
PRK12386	251	fumarate reductase iron-sulfur subunit; Provisiona	98.14
PRK08345	289	cytochrome-c3 hydrogenase subunit gamma; Provision	98.07
PRK12577	329	succinate dehydrogenase iron-sulfur subunit; Provi	98.06
TIGR03193	148	4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamm	98.03
cd06220	233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	98.0
PRK12385	244	fumarate reductase iron-sulfur subunit; Provisiona	97.96
PRK07570	250	succinate dehydrogenase/fumarate reductase iron-su	97.95
PRK12576	279	succinate dehydrogenase iron-sulfur subunit; Provi	97.92
PRK08221	263	anaerobic sulfite reductase subunit B; Provisional	97.91
TIGR02911	261	sulfite_red_B sulfite reductase, subunit B. Member	97.87
COG3383	978	Uncharacterized anaerobic dehydrogenase [General f	97.84
PLN00129	276	succinate dehydrogenase [ubiquinone] iron-sulfur s	97.8
PRK00054	250	dihydroorotate dehydrogenase electron transfer sub	97.77
TIGR03198	151	pucE xanthine dehydrogenase E subunit. This gene h	97.73
PRK12575	235	succinate dehydrogenase iron-sulfur subunit; Provi	97.72
TIGR00384	220	dhsB succinate dehydrogenase and fumarate reductas	97.68
COG0479	234	FrdB Succinate dehydrogenase/fumarate reductase, F	97.68
cd06188	283	NADH_quinone_reductase Na+-translocating NADH:quin	97.58
cd06218	246	DHOD_e_trans FAD/NAD binding domain in the electro	97.54
COG2080	156	CoxS Aerobic-type carbon monoxide dehydrogenase, s	97.52
cd06196	218	FNR_like_1 Ferredoxin reductase-like proteins cata	97.51
cd06189	224	flavin_oxioreductase NAD(P)H dependent flavin oxid	97.49
PRK08051	232	fre FMN reductase; Validated	97.48
cd06195	241	FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c	97.48
cd06194	222	FNR_N-term_Iron_sulfur_binding Iron-sulfur binding	97.47
PRK05950	232	sdhB succinate dehydrogenase iron-sulfur subunit;	97.45
cd06211	238	phenol_2-monooxygenase_like Phenol 2-monooxygenase	97.45
cd06212	232	monooxygenase_like The oxygenase reductase FAD/NAD	97.45
cd06198	216	FNR_like_3 NAD(P) binding domain of ferredoxin red	97.44
cd06217	235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	97.44
cd06219	248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	97.42
cd06191	231	FNR_iron_sulfur_binding Iron-sulfur binding Ferred	97.4
cd00322	223	FNR_like Ferredoxin reductase (FNR), an FAD and NA	97.39
PRK05713	312	hypothetical protein; Provisional	97.38
cd06215	231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	97.37
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	97.36
cd06209	228	BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD	97.35
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	97.33
cd06184	247	flavohem_like_fad_nad_binding FAD_NAD(P)H binding	97.32
cd06187	224	O2ase_reductase_like The oxygenase reductase FAD/N	97.3
PRK13289	399	bifunctional nitric oxide dioxygenase/dihydropteri	97.28
cd06185	211	PDR_like Phthalate dioxygenase reductase (PDR) is	97.28
cd06210	236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	97.28
cd06213	227	oxygenase_e_transfer_subunit The oxygenase reducta	97.27
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	97.22
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	97.16
TIGR02963	467	xanthine_xdhA xanthine dehydrogenase, small subuni	97.16
cd06192	243	DHOD_e_trans_like FAD/NAD binding domain (electron	97.11
cd06183	234	cyt_b5_reduct_like Cytochrome b5 reductase catalyz	97.08
cd06216	243	FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr	97.07
cd06190	232	T4MO_e_transfer_like Toluene-4-monoxygenase electr	96.98
cd06214	241	PA_degradation_oxidoreductase_like NAD(P) binding	96.92
PRK09800	956	putative hypoxanthine oxidase; Provisional	96.88
cd06193	235	siderophore_interacting Siderophore interacting pr	96.88
PTZ00319	300	NADH-cytochrome B5 reductase; Provisional	96.61
cd06221	253	sulfite_reductase_like Anaerobic sulfite reductase	96.6
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.59
TIGR03311	848	Se_dep_Molyb_1 selenium-dependent molybdenum hydro	96.5
PLN00192	1344	aldehyde oxidase	96.5
KOG2282	708	consensus NADH-ubiquinone oxidoreductase, NDUFS1/7	96.43
TIGR03313	951	Se_sel_red_Mo probable selenate reductase, molybde	96.27
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.2
TIGR02969	1330	mam_aldehyde_ox aldehyde oxidase. Members of this	96.13
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	95.93
PRK05802	320	hypothetical protein; Provisional	95.9
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	95.81
PRK06222	281	ferredoxin-NADP(+) reductase subunit alpha; Review	95.36
COG4097	438	Predicted ferric reductase [Inorganic ion transpor	95.19
KOG3378	385	consensus Globins and related hemoproteins [Energy	94.77
PLN02252	888	nitrate reductase [NADPH]	94.42
PRK10926	248	ferredoxin-NADP reductase; Provisional	94.31
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	94.1
PLN03115	367	ferredoxin--NADP(+) reductase; Provisional	94.05
KOG0534	286	consensus NADH-cytochrome b-5 reductase [Coenzyme	94.0
cd06206	384	bifunctional_CYPOR These bifunctional proteins fus	93.82
cd06208	286	CYPOR_like_FNR These ferredoxin reductases are rel	93.7
cd06182	267	CYPOR_like NADPH cytochrome p450 reductase (CYPOR)	93.43
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	93.42
cd06200	245	SiR_like1 Cytochrome p450- like alpha subunits of	93.24
PLN03116	307	ferredoxin--NADP+ reductase; Provisional	93.19
cd06201	289	SiR_like2 Cytochrome p450- like alpha subunits of	92.5
KOG3049	288	consensus Succinate dehydrogenase, Fe-S protein su	92.49
TIGR03224	411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	92.28
cd06202	406	Nitric_oxide_synthase The ferredoxin-reductase (FN	92.05
COG4630	493	XdhA Xanthine dehydrogenase, iron-sulfur cluster a	91.57
cd06186	210	NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz	91.29
cd06199	360	SiR Cytochrome p450- like alpha subunits of E. col	91.03
cd06204	416	CYPOR NADPH cytochrome p450 reductase (CYPOR) serv	90.77
cd06207	382	CyPoR_like NADPH cytochrome p450 reductase (CYPOR)	90.6
COG0543	252	UbiB 2-polyprenylphenol hydroxylase and related fl	90.29
PRK06214	530	sulfite reductase; Provisional	89.93
cd06203	398	methionine_synthase_red Human methionine synthase	89.86
KOG0430	1257	consensus Xanthine dehydrogenase [Nucleotide trans	89.17
PLN02906	1319	xanthine dehydrogenase	88.33
PRK10953	600	cysJ sulfite reductase subunit alpha; Provisional	87.34
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	87.17
TIGR01931	597	cysJ sulfite reductase [NADPH] flavoprotein, alpha	84.96
PTZ00274	325	cytochrome b5 reductase; Provisional	84.92
PF10418	40	DHODB_Fe-S_bind: Iron-sulfur cluster binding domai	82.95
smart00455	70	RBD Raf-like Ras-binding domain.	81.98

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=99.96  E-value=8.5e-29  Score=203.99  Aligned_cols=121  Identities=24%  Similarity=0.447  Sum_probs=107.8

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC---------CceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA---------MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGME   87 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~---------~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~   87 (149)
                      .++++|+|||.+ |++++++|+++|+++++||.|.         ...++|++. .+|  +++++++|+|||++|+++||+
T Consensus       202 ~~~~vyiCGP~~m~~~v~~~l~~~Gv~~~~i~~E~F~~~~~~~~~~~~~v~~~-~~~--~~~~~~~~~~lL~~~~~~gi~  278 (332)
T PRK10684        202 ASRTVMTCGPAPYMDWVEQEVKALGVTADRFFKEKFFTPVAEAATSGLTFTKL-QPA--REFYAPVGTTLLEALESNKVP  278 (332)
T ss_pred             cCCEEEEECCHHHHHHHHHHHHHcCCCHHHeEeeccCCCCCCcCCCceEEEEe-cCC--EEEEeCCCChHHHHHHHcCCC
Confidence            357899999999 6999999999999999987652         224677774 566  889999999999999999999


Q ss_pred             CCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcCCeEEE
Q 031979           88 LPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIY  141 (149)
Q Consensus        88 i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~d~~I~  141 (149)
                      ++++|+.|.||+|++++++|++.+.....|+++++++|++|+|+++|.+|++|+
T Consensus       279 ~~~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~~~~d~~i~  332 (332)
T PRK10684        279 VVAACRAGVCGCCKTKVVSGEYTVSSTMTLTPAEIAQGYVLACSCHPQGDLVLA  332 (332)
T ss_pred             ccCCCCCcCCCCCEEEEecCcccccccccCCHHHHhCCcEEEeeCEECCCeEEC
Confidence            999999999999999999999998766789999999999999999999998873

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=99.95  E-value=4.2e-28  Score=200.84  Aligned_cols=124  Identities=26%  Similarity=0.507  Sum_probs=106.3

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC-------------------CceeEEEEEcCCCCeEE-EEcCCCch
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA-------------------MAVYKVKLIGPNGEENE-FDAPDDAY   76 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~-------------------~~~~~V~~~~~~G~~~~-~~v~~g~t   76 (149)
                      ...++|+|||.+ |+++++.|.++|++++++|+|.                   ...++|+|. .+|.... +.+++|+|
T Consensus       206 ~~~~vyiCGp~~m~~~v~~~L~~~Gv~~~~i~~E~F~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~s  284 (352)
T TIGR02160       206 RADEWFLCGPQAMVDDAEQALTGLGVPAGRVHLELFYTDDEPGREVRHEVSGPEGDVSKVTVT-LDGRSTETSSLSRDES  284 (352)
T ss_pred             cCCEEEEECCHHHHHHHHHHHHHcCCCHHHEEEEeccCCCCCcccccccccccCCCceEEEEE-ECCceEEEEecCCCCc
Confidence            457899999999 6999999999999998865431                   124678885 6774443 57899999


Q ss_pred             HHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcCC-eEEEe
Q 031979           77 IIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSD-CVIYT  142 (149)
Q Consensus        77 LLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~d-~~I~~  142 (149)
                      ||++++++||+++++|++|.||+|++++++|++.+.+...|+++++++|++|+||++|.+| ++|++
T Consensus       285 lL~~~~~~gi~~~~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~~~~~~~~~~~  351 (352)
T TIGR02160       285 VLDAALRARPDLPFACKGGVCGTCRAKVLEGKVDMERNYALEPDEVDAGYVLTCQAYPLSDKLVVDY  351 (352)
T ss_pred             HHHHHHHcCCCCcCCCCCccCCCCEEEEeccccccccccCCCHHHHhCCcEEEeeEEECCCcEEEec
Confidence            9999999999999999999999999999999999987777998888999999999999987 77753

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>CHL00134 petF ferredoxin; Validated

Probab=99.94  E-value=9.2e-27  Score=162.50  Aligned_cols=97  Identities=68%  Similarity=1.215  Sum_probs=88.8

Q ss_pred             CceeEEEEEcC--CCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEe
Q 031979           52 MAVYKVKLIGP--NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLT  129 (149)
Q Consensus        52 ~~~~~V~~~~~--~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~La  129 (149)
                      |++++|+|. .  +|..++|++++|+|||++|+++||+++++|++|.||+|++++++|++++.+...|+++++++|++|+
T Consensus         1 ~~~~~v~~~-~~~~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~v~~~~~~~l~~~e~~~g~~L~   79 (99)
T CHL00134          1 MATYKVTLL-SEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLT   79 (99)
T ss_pred             CCeEEEEEE-ecCCCCeEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEEeCccccCcccCCCHHHHhCCeEEE
Confidence            556888884 4  6656789999999999999999999999999999999999999999998776678988889999999


Q ss_pred             eeeEEcCCeEEEecCCcCCC
Q 031979          130 CVAYPTSDCVIYTHKESELY  149 (149)
Q Consensus       130 Cq~~~~~d~~I~~~~~~~~~  149 (149)
                      |+++|.+|++|++|.++++|
T Consensus        80 C~~~~~~d~~i~~~~~~~~~   99 (99)
T CHL00134         80 CVAYPTSDCTILTHQEEELY   99 (99)
T ss_pred             eeCEECCCeEEEeccccccC
Confidence            99999999999999999987

>TIGR02008 fdx_plant ferredoxin [2Fe-2S]

Probab=99.94  E-value=1e-26  Score=161.60  Aligned_cols=96  Identities=68%  Similarity=1.236  Sum_probs=88.5

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY  133 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~  133 (149)
                      .++|+|..++|..+++.+++|+|||++++++||+++++|++|.||+|+++|++|.+++.+...|+++++++|++|+||++
T Consensus         2 ~~~v~~~~~~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~g~~LaC~~~   81 (97)
T TIGR02008         2 TYKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVAY   81 (97)
T ss_pred             eEEEEEEECCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCceEEEeCcEecCccCCCCHHHHhCCeEEEeeCE
Confidence            46788855677778999999999999999999999999999999999999999999887666688888999999999999


Q ss_pred             EcCCeEEEecCCcCCC
Q 031979          134 PTSDCVIYTHKESELY  149 (149)
Q Consensus       134 ~~~d~~I~~~~~~~~~  149 (149)
                      +.+|++|++++++++|
T Consensus        82 ~~~di~v~~~~~~~~~   97 (97)
T TIGR02008        82 PTSDCTIETHKEEDLY   97 (97)
T ss_pred             ECCCeEEEeccccccC
Confidence            9999999999999988

This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.

>PLN03136 Ferredoxin; Provisional

Probab=99.92  E-value=1.1e-24  Score=161.79  Aligned_cols=98  Identities=64%  Similarity=1.155  Sum_probs=88.8

Q ss_pred             CCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEee
Q 031979           51 AMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTC  130 (149)
Q Consensus        51 ~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaC  130 (149)
                      .|..++|+|..++| .++|++++|+||||+++++||++||+|+.|.||+|++++++|.+++.+...|++++.++||+|+|
T Consensus        51 ~m~~~~V~l~~~~~-~~~~~~~~g~tILdAa~~~Gi~lp~sCr~G~CGtC~~~l~~G~V~~~~~~~L~~~e~~~G~~LaC  129 (148)
T PLN03136         51 AMATYKVKFITPEG-EQEVECEEDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVLTC  129 (148)
T ss_pred             eeeeEEEEEecCCC-cEEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEecCcCccCcccCCCHHHhcCCEEEEe
Confidence            45678899853443 47999999999999999999999999999999999999999999988777899999999999999


Q ss_pred             eeEEcCCeEEEecCCcCCC
Q 031979          131 VAYPTSDCVIYTHKESELY  149 (149)
Q Consensus       131 q~~~~~d~~I~~~~~~~~~  149 (149)
                      |++|.+|++|++++++++.
T Consensus       130 ~a~p~sD~~Ie~~~e~~l~  148 (148)
T PLN03136        130 VAYPTSDVVIETHKEEAIM  148 (148)
T ss_pred             EeEECCCcEEecCChhhcC
Confidence            9999999999999999873

>PTZ00038 ferredoxin; Provisional

Probab=99.91  E-value=7.5e-24  Score=162.84  Aligned_cols=95  Identities=53%  Similarity=1.043  Sum_probs=86.8

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY  133 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~  133 (149)
                      .++|+|..++| .+++++++|+|||++|+++||++|++|+.|.||+|++++++|++++.+...|+++++++|++|+||++
T Consensus        95 ~~~Vt~~~~~g-~~~~~v~~geTILdAae~aGI~lp~sCr~G~CGtCkvrV~~GeV~~~e~~~Ls~ee~~~G~~LaCqa~  173 (191)
T PTZ00038         95 FYNITLQTPDG-EKVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCTCY  173 (191)
T ss_pred             eEEEEEEeCCC-cEEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEeEEeecccccCccccCCHHHhcCCEEEEeeCE
Confidence            57888843544 38999999999999999999999999999999999999999999998888899999999999999999


Q ss_pred             EcCCeEEEecCCcCCC
Q 031979          134 PTSDCVIYTHKESELY  149 (149)
Q Consensus       134 ~~~d~~I~~~~~~~~~  149 (149)
                      +.+|++|+++++++++
T Consensus       174 p~sDi~Ie~p~e~~~~  189 (191)
T PTZ00038        174 PKSDCTIETHKEDELH  189 (191)
T ss_pred             ECCCeEEecCChHHhc
Confidence            9999999999998764

>PRK10713 2Fe-2S ferredoxin YfaE; Provisional

Probab=99.90  E-value=1.9e-23  Score=141.63  Aligned_cols=83  Identities=24%  Similarity=0.476  Sum_probs=71.5

Q ss_pred             eeEEEEEcCCCCeEEEEcCC-CchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeee
Q 031979           54 VYKVKLIGPNGEENEFDAPD-DAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVA  132 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~-g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~  132 (149)
                      |++|+|. .+|  ++|++++ |+|||++++++|+++||+|++|.||+|++++++|++++.+..   ..+.++|++|+|++
T Consensus         1 ~~~v~~~-~~~--~~~~~~~~~~tlL~a~~~~gi~~p~~Cr~G~Cg~C~~~~~sG~v~~~~~~---~~~~~~g~~L~C~~   74 (84)
T PRK10713          1 MARVTLR-ITG--TQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEP---LAFIQPGEILPCCC   74 (84)
T ss_pred             CCEEEEE-eCC--cEEEecCCCCcHHHHHHHcCCCCCCCCCCeECCCCEeEEEeCeEecCCCc---cchhhCCEEEEeeC
Confidence            4678884 677  7899986 599999999999999999999999999999999999875442   23467899999999


Q ss_pred             EEcCCeEEEe
Q 031979          133 YPTSDCVIYT  142 (149)
Q Consensus       133 ~~~~d~~I~~  142 (149)
                      +|.+|++|++
T Consensus        75 ~p~sd~~ie~   84 (84)
T PRK10713         75 RAKGDIEIEM   84 (84)
T ss_pred             EECCCEEEeC
Confidence            9999999874

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=99.83  E-value=2.5e-20  Score=153.75  Aligned_cols=90  Identities=38%  Similarity=0.747  Sum_probs=81.6

Q ss_pred             eEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCC--CCCCCChhhccCCeEEeeee
Q 031979           55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS--DGSFLDDKQMEKGFVLTCVA  132 (149)
Q Consensus        55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~--~~~~L~~~~~~~g~~LaCq~  132 (149)
                      ++|+|. ++|  +++++++|+|||++++++||+++++|+.|.||+|++++++|++++.  +...|++++.++|++|+||+
T Consensus         3 ~~v~~~-~~~--~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~   79 (339)
T PRK07609          3 FQVTLQ-PSG--RQFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCA   79 (339)
T ss_pred             EEEEEe-cCC--eEEEeCCCCcHHHHHHHcCCCCCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEeeC
Confidence            578884 677  8999999999999999999999999999999999999999999875  55678888889999999999


Q ss_pred             EEcCCeEEEecCCcC
Q 031979          133 YPTSDCVIYTHKESE  147 (149)
Q Consensus       133 ~~~~d~~I~~~~~~~  147 (149)
                      ++.+|++|+++..++
T Consensus        80 ~~~~d~~i~~~~~~~   94 (339)
T PRK07609         80 KPLSDLVLEAREVPA   94 (339)
T ss_pred             EECCCEEEEeccccc
Confidence            999999999987654

>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain

Probab=99.82  E-value=7.1e-20  Score=122.38  Aligned_cols=83  Identities=42%  Similarity=0.798  Sum_probs=72.8

Q ss_pred             EEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcCC
Q 031979           58 KLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSD  137 (149)
Q Consensus        58 ~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~d  137 (149)
                      +|. .+|..+++++++|+|||++++++|++++++|+.|.||+|+++|.+|.+.+.+...+...+..+++||+||+++.+|
T Consensus         2 ~~~-~~~~~~~~~~~~g~~ll~al~~~g~~~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~~   80 (84)
T cd00207           2 TIN-VPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDG   80 (84)
T ss_pred             EEe-cCCCCEEEEECCCCcHHHHHHHcCCCcccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeCCC
Confidence            443 3344589999999999999999999999999999999999999999998876666777777889999999999999


Q ss_pred             eEEE
Q 031979          138 CVIY  141 (149)
Q Consensus       138 ~~I~  141 (149)
                      ++|+
T Consensus        81 i~v~   84 (84)
T cd00207          81 LVIE   84 (84)
T ss_pred             cEEC
Confidence            9874

Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.

>COG0633 Fdx Ferredoxin [Energy production and conversion]

Probab=99.82  E-value=5.8e-20  Score=128.86  Aligned_cols=92  Identities=27%  Similarity=0.540  Sum_probs=69.6

Q ss_pred             EEEEEcCCCC-eEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeC--cccCCCC---CCCChhhccCCeEEe
Q 031979           56 KVKLIGPNGE-ENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSG--SVDQSDG---SFLDDKQMEKGFVLT  129 (149)
Q Consensus        56 ~V~~~~~~G~-~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G--~v~~~~~---~~L~~~~~~~g~~La  129 (149)
                      ++.++..++. ...+.++.|+|||++|+++||+++|+||.|.||+|+|+|++|  .+.+.+.   .+|.+.....++||+
T Consensus         3 ~~~~v~~~~~~~~~~~~~~g~tiLe~a~~~gi~i~~~C~~g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~   82 (102)
T COG0633           3 KIAFVTIDGEGDVTEAVNEGETLLEAAERNGIPIEYACRGGACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLS   82 (102)
T ss_pred             ceEEEeccCCcceEEeccCCcHHHHHHHHCCCcceecCCCCccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEe
Confidence            3444334442 245555669999999999999999999999999999999999  6655432   344434566779999


Q ss_pred             eeeEEcCCeEEEecCCcC
Q 031979          130 CVAYPTSDCVIYTHKESE  147 (149)
Q Consensus       130 Cq~~~~~d~~I~~~~~~~  147 (149)
                      ||+++.+|+.|++-...+
T Consensus        83 Cq~~~~~d~~i~~~~~~~  100 (102)
T COG0633          83 CQCRVKGDLDIEVVEEPE  100 (102)
T ss_pred             eeeEECCCcceEEEeccC
Confidence            999999999877655544

>PLN02593 adrenodoxin-like ferredoxin protein

Probab=99.81  E-value=6.2e-20  Score=131.66  Aligned_cols=91  Identities=22%  Similarity=0.392  Sum_probs=75.0

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCccc-C------CCCCCCC-hhhccCCe
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVD-Q------SDGSFLD-DKQMEKGF  126 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~-~------~~~~~L~-~~~~~~g~  126 (149)
                      +|+|+.++|+.+++++++|+|||++++++|+++++.|+ .|.||+|+|+|+++... .      .|...|+ ..+..+++
T Consensus         2 ~V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~s   81 (117)
T PLN02593          2 SVTFVDKDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTETS   81 (117)
T ss_pred             EEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCCe
Confidence            68887788988899999999999999999999999999 69999999999654322 1      1234555 34567899


Q ss_pred             EEeeeeEEcC---CeEEEecCCc
Q 031979          127 VLTCVAYPTS---DCVIYTHKES  146 (149)
Q Consensus       127 ~LaCq~~~~~---d~~I~~~~~~  146 (149)
                      ||+||+.+.+   |++|++|+++
T Consensus        82 RLaCQ~~v~~~~~~~~v~ip~~~  104 (117)
T PLN02593         82 RLGCQVIAKPELDGMRLALPAAT  104 (117)
T ss_pred             EecceeEeecCCCCEEEEcCchh
Confidence            9999999984   6999999875

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=99.81  E-value=1.7e-19  Score=149.48  Aligned_cols=91  Identities=31%  Similarity=0.549  Sum_probs=78.6

Q ss_pred             eEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccC--CCCCCCChhhccCCeEEeeee
Q 031979           55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ--SDGSFLDDKQMEKGFVLTCVA  132 (149)
Q Consensus        55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~--~~~~~L~~~~~~~g~~LaCq~  132 (149)
                      ++|++...+|+...+++++|+|||++++++|+.++++|+.|.||+|++++++|.++.  .+...|++++.++|++|+||+
T Consensus         3 ~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~   82 (340)
T PRK11872          3 HKVALSFADGKTLFFPVGKDELLLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQT   82 (340)
T ss_pred             eEEEEEecCCcEEEEEeCCCCcHHHHHHHcCCCCcCCCCCeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEeeC
Confidence            455553356766778999999999999999999999999999999999999999874  344568888888999999999


Q ss_pred             EEcCCeEEEecCC
Q 031979          133 YPTSDCVIYTHKE  145 (149)
Q Consensus       133 ~~~~d~~I~~~~~  145 (149)
                      ++.+|++|+++.+
T Consensus        83 ~~~~d~~i~~~~~   95 (340)
T PRK11872         83 RVKSDAAFYFDFD   95 (340)
T ss_pred             EECCceEEEecCc
Confidence            9999999998754

>PRK05713 hypothetical protein; Provisional

Probab=99.80  E-value=2.5e-19  Score=146.67  Aligned_cols=80  Identities=24%  Similarity=0.541  Sum_probs=73.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcCCeEEE
Q 031979           62 PNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIY  141 (149)
Q Consensus        62 ~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~d~~I~  141 (149)
                      .+|  ++|++++|+|||++++++||+++++|++|.||+|++++++|++.......|++++.++|+||+||+++.+|++|+
T Consensus         6 ~~~--~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d~~i~   83 (312)
T PRK05713          6 VGE--RRWSVPAGSNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVGDLRVE   83 (312)
T ss_pred             cCC--eEEEECCCCcHHHHHHHcCCCCCcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEECCceEEE
Confidence            567  899999999999999999999999999999999999999999876555678888889999999999999999999


Q ss_pred             ec
Q 031979          142 TH  143 (149)
Q Consensus       142 ~~  143 (149)
                      ++
T Consensus        84 ~~   85 (312)
T PRK05713         84 VF   85 (312)
T ss_pred             ec
Confidence            86

>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system

Probab=99.79  E-value=5e-19  Score=125.55  Aligned_cols=84  Identities=27%  Similarity=0.425  Sum_probs=68.4

Q ss_pred             cCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCCCCCCCChh------hccCCeEEeeeeE
Q 031979           61 GPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQSDGSFLDDK------QMEKGFVLTCVAY  133 (149)
Q Consensus        61 ~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~~~~~L~~~------~~~~g~~LaCq~~  133 (149)
                      .++|  +++++++|+|||++++++|++++++|+ .|.||+|+++|.+|.........++++      ++.+++||+||++
T Consensus        12 ~p~~--~~~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~~   89 (110)
T TIGR02007        12 CPEG--AVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDKAWGLEPDSRLSCQAV   89 (110)
T ss_pred             CCCC--eEEEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhhccCCCCCcEEeeeEE
Confidence            3566  899999999999999999999999999 799999999999996544332222221      3467899999999


Q ss_pred             Ec-CCeEEEecCCc
Q 031979          134 PT-SDCVIYTHKES  146 (149)
Q Consensus       134 ~~-~d~~I~~~~~~  146 (149)
                      +. +|++|+++..+
T Consensus        90 ~~~~dl~v~~~~~~  103 (110)
T TIGR02007        90 VADEDLVVEIPKYT  103 (110)
T ss_pred             EcCCCEEEEECchh
Confidence            88 59999998754

This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=99.77  E-value=1.7e-18  Score=146.46  Aligned_cols=94  Identities=18%  Similarity=0.399  Sum_probs=80.7

Q ss_pred             CceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCC--CCCCCChhhccCCeEE
Q 031979           52 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQS--DGSFLDDKQMEKGFVL  128 (149)
Q Consensus        52 ~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~--~~~~L~~~~~~~g~~L  128 (149)
                      +.+++|++...+|..+++++++|+|||++++++|+++++.|+ .|.||+|++++.+|.+...  +...|++++.++|+||
T Consensus        27 ~~~~~v~v~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~rL  106 (405)
T TIGR01941        27 VSSGDITIGINDDEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWRL  106 (405)
T ss_pred             cccccEEEEEcCCCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcEE
Confidence            456677775456666899999999999999999999999999 5899999999999977643  3457888888999999


Q ss_pred             eeeeEEcCCeEEEecCC
Q 031979          129 TCVAYPTSDCVIYTHKE  145 (149)
Q Consensus       129 aCq~~~~~d~~I~~~~~  145 (149)
                      +||+++.+|++|+++..
T Consensus       107 aCq~~~~~d~~i~~~~~  123 (405)
T TIGR01941       107 SCQVKVKQDMSIEIPEE  123 (405)
T ss_pred             EeeCEECCCEEEEECcc
Confidence            99999999999999743

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PTZ00490 Ferredoxin superfamily; Provisional

Probab=99.76  E-value=2.3e-18  Score=127.30  Aligned_cols=94  Identities=15%  Similarity=0.266  Sum_probs=78.9

Q ss_pred             ceeEEEEEcCCCCeEEEEcCCCchHHHHHHHc-CCCCCCCCC-CcccCCcEEEEeeCcccC------CCCCCCChh-hcc
Q 031979           53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDT-GMELPYSCR-AGACSTCAGQMVSGSVDQ------SDGSFLDDK-QME  123 (149)
Q Consensus        53 ~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi~i~~~C~-~G~CGtC~v~v~~G~v~~------~~~~~L~~~-~~~  123 (149)
                      ..++|+|...+|..+++++++|+|||+++.++ +++|++.|+ .|.||+|+|+|.+|+.+.      .|...|+.. +..
T Consensus        34 g~v~I~~~~~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~~~  113 (143)
T PTZ00490         34 GKVKVCVKKRDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVK  113 (143)
T ss_pred             CcEEEEEEcCCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccccCC
Confidence            46788888788988999999999999999995 799999999 999999999999875442      233556655 678


Q ss_pred             CCeEEeeeeEEcC---CeEEEecCCc
Q 031979          124 KGFVLTCVAYPTS---DCVIYTHKES  146 (149)
Q Consensus       124 ~g~~LaCq~~~~~---d~~I~~~~~~  146 (149)
                      +++||+||..+..   +++|++|+++
T Consensus       114 ~gsRLaCQi~v~~~ldgl~V~vp~~~  139 (143)
T PTZ00490        114 ETSRLACQVDLTPEMDGLEVELPSYV  139 (143)
T ss_pred             CCcEEeeeEEEecCCCCEEEEeCccc
Confidence            8999999999986   5699999875

>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions

Probab=99.75  E-value=3.1e-18  Score=113.48  Aligned_cols=73  Identities=34%  Similarity=0.725  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcCCCch-HHHHHHHc-CCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCe-EEeeeeEEc
Q 031979           62 PNGEENEFDAPDDAY-IIDSAEDT-GMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGF-VLTCVAYPT  135 (149)
Q Consensus        62 ~~G~~~~~~v~~g~t-LLea~~~~-Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~-~LaCq~~~~  135 (149)
                      .+|+.++|++++|+| ||++|+++ |++++++|+.|.||+|+++|++|++ +.+...+++++..+++ ||+||++|+
T Consensus         3 i~g~~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~-~~~~~~~~~~~~~~~~~rLaCq~~~t   78 (78)
T PF00111_consen    3 INGKGVTVEVPPGETLLLDALERAGGIGIPYSCGGGGCGTCRVRVLEGEV-QSNETFLEDEELAEGGIRLACQTRVT   78 (78)
T ss_dssp             TTTEEEEEEEETTSBBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESEE-ETTTSSSHHHHHHTTEEEEGGGSEES
T ss_pred             ECCeEEEEEeCCCccHHHHHHHHcCCCCcccCCCCCccCCcEEEEeeCcc-cCCcccCCHHHHHcCCCcCCcEEEeC
Confidence            577778999999999 99999999 9999999998889999999999999 4445566666666665 799999874

Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=99.71  E-value=4e-17  Score=138.30  Aligned_cols=89  Identities=19%  Similarity=0.415  Sum_probs=75.0

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCC--CCCCCChhhccCCeEEee
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQS--DGSFLDDKQMEKGFVLTC  130 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~--~~~~L~~~~~~~g~~LaC  130 (149)
                      .++|++ ..+ ..+++++++|+|||++++++|++++++|+ +|.||+|++++++|.+...  +...|++++.++|+||+|
T Consensus        35 ~~~i~~-~~~-~~~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~g~rLaC  112 (409)
T PRK05464         35 DVTIKI-NGD-PEKTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWRLSC  112 (409)
T ss_pred             cEEEEE-cCC-CcEEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCcCCChhhhhhcCHhhccCCcEEEe
Confidence            445555 222 13889999999999999999999999999 5999999999999987643  345688888889999999


Q ss_pred             eeEEcCCeEEEecC
Q 031979          131 VAYPTSDCVIYTHK  144 (149)
Q Consensus       131 q~~~~~d~~I~~~~  144 (149)
                      |+++.+|++|+++.
T Consensus       113 q~~~~~d~~ie~~~  126 (409)
T PRK05464        113 QVKVKQDMKIEVPE  126 (409)
T ss_pred             eCEECCCEEEEECc
Confidence            99999999999874

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=99.61  E-value=1.2e-15  Score=123.85  Aligned_cols=90  Identities=17%  Similarity=0.389  Sum_probs=76.8

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCC--CCCCCChhhccCCeEEee
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQS--DGSFLDDKQMEKGFVLTC  130 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~--~~~~L~~~~~~~g~~LaC  130 (149)
                      ..+|++  .++..+++.+++|.+||.++..+||.|++.|+ .|.||.|+|+|.+|.-+..  +...++..+.++||||+|
T Consensus        36 d~ti~I--N~d~e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ggge~LpTe~sh~skrea~eG~RLsC  113 (410)
T COG2871          36 DITIKI--NGDPEKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKKGGGEILPTELSHISKREAKEGWRLSC  113 (410)
T ss_pred             ceEEEe--CCChhhceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEecCCCccCcchhhhhhhhhhhccceEEE
Confidence            455665  33345899999999999999999999999999 8999999999998865543  445677788899999999


Q ss_pred             eeEEcCCeEEEecCC
Q 031979          131 VAYPTSDCVIYTHKE  145 (149)
Q Consensus       131 q~~~~~d~~I~~~~~  145 (149)
                      |+.++.||.|++|++
T Consensus       114 Q~~Vk~dm~levpEe  128 (410)
T COG2871         114 QVNVKHDMDLEVPEE  128 (410)
T ss_pred             EecccccceeechHH
Confidence            999999999999875

>COG3894 Uncharacterized metal-binding protein [General function prediction only]

Probab=99.51  E-value=1.3e-14  Score=124.30  Aligned_cols=90  Identities=26%  Similarity=0.427  Sum_probs=73.2

Q ss_pred             eEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979           55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY  133 (149)
Q Consensus        55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~  133 (149)
                      +.|+| .++|  +..+ ++|+|||+++++.|+.|.+.|+ .|.||.|+|.|.+|.....+..--..-.+..||||+||++
T Consensus         2 p~v~f-~psg--kr~~-~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~~~   77 (614)
T COG3894           2 PLVTF-MPSG--KRGE-DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQAQ   77 (614)
T ss_pred             ceeEe-ecCC--CcCC-CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCCceeccchhHHHHHHhhceeeeeehh
Confidence            56889 5999  7777 9999999999999999999999 9999999999999975432210001112456999999999


Q ss_pred             EcCCeEEEecCCcCC
Q 031979          134 PTSDCVIYTHKESEL  148 (149)
Q Consensus       134 ~~~d~~I~~~~~~~~  148 (149)
                      +.+|++|.+|+++.+
T Consensus        78 v~gd~~i~ip~es~l   92 (614)
T COG3894          78 VLGDLVIFIPPESRL   92 (614)
T ss_pred             hcCceEEEcCchhhH
Confidence            999999999998653

>KOG3309 consensus Ferredoxin [Energy production and conversion]

Probab=99.20  E-value=3.5e-11  Score=89.15  Aligned_cols=92  Identities=21%  Similarity=0.339  Sum_probs=75.1

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCC------CCCCCCh-hhccCC
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQS------DGSFLDD-KQMEKG  125 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~------~~~~L~~-~~~~~g  125 (149)
                      ..+|+|+.++|.++.+.+..|+|||+++.++||+++..|. .-.|.+|+|.|.+-..+..      |..+|+- -.+.+.
T Consensus        43 ~i~Itfv~~dG~~~~i~g~vGdtlLd~ah~n~idleGACEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gLt~t  122 (159)
T KOG3309|consen   43 DIKITFVDPDGEEIKIKGKVGDTLLDAAHENNLDLEGACEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGLTET  122 (159)
T ss_pred             eEEEEEECCCCCEEEeeeecchHHHHHHHHcCCCccccccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhccccc
Confidence            5789999999999999999999999999999999999999 8999999999876544321      2344442 235678


Q ss_pred             eEEeeeeEEcC---CeEEEecCC
Q 031979          126 FVLTCVAYPTS---DCVIYTHKE  145 (149)
Q Consensus       126 ~~LaCq~~~~~---d~~I~~~~~  145 (149)
                      +||.||....-   .++|.+|+.
T Consensus       123 SRLGCQI~l~keldG~~v~vP~a  145 (159)
T KOG3309|consen  123 SRLGCQIVLTKELDGMRVAVPEA  145 (159)
T ss_pred             cccceEEEeccccCCcEEECccc
Confidence            99999998865   478888865

>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated

Probab=99.17  E-value=5e-11  Score=94.49  Aligned_cols=71  Identities=23%  Similarity=0.485  Sum_probs=60.0

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEe
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLT  129 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~La  129 (149)
                      .|+|. .+|  +.|++++|+|||+|++++|+.||+.|.      .|.|+.|+|+| +|.               .+.+.+
T Consensus         3 ~v~i~-idg--~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v-~g~---------------~~~~~a   63 (234)
T PRK07569          3 VKTLT-IDD--QLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEI-EGS---------------NKLLPA   63 (234)
T ss_pred             eEEEE-ECC--EEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEE-CCC---------------CccccC
Confidence            35553 578  789999999999999999999999999      89999999988 441               145679


Q ss_pred             eeeEEcCCeEEEecCC
Q 031979          130 CVAYPTSDCVIYTHKE  145 (149)
Q Consensus       130 Cq~~~~~d~~I~~~~~  145 (149)
                      |++.+..+|+|.+..+
T Consensus        64 C~t~v~~Gm~v~t~~~   79 (234)
T PRK07569         64 CVTPVAEGMVVQTNTP   79 (234)
T ss_pred             cCCCCCCCCEEEECCH
Confidence            9999999999988654

>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.14  E-value=4.3e-11  Score=80.70  Aligned_cols=69  Identities=22%  Similarity=0.464  Sum_probs=48.1

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCC----------cccCCcEEEEeeCcccCCCCCCCChhhccCC
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRA----------GACSTCAGQMVSGSVDQSDGSFLDDKQMEKG  125 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~----------G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g  125 (149)
                      .|+| ..||  +.+++++|+|||+|+.++|+.||+.|..          |.|+.|.|+|- |                ..
T Consensus         3 ~v~i-~idG--~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~-g----------------~~   62 (82)
T PF13510_consen    3 MVTI-TIDG--KPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVD-G----------------EP   62 (82)
T ss_dssp             EEEE-EETT--EEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEES-S----------------EE
T ss_pred             EEEE-EECC--EEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEEC-C----------------Cc
Confidence            4666 3689  8999999999999999999999999986          99999999884 3                12


Q ss_pred             eEEeeeeEEcCCeEEEecC
Q 031979          126 FVLTCVAYPTSDCVIYTHK  144 (149)
Q Consensus       126 ~~LaCq~~~~~d~~I~~~~  144 (149)
                      .+.||++.+..+|.|....
T Consensus        63 ~v~AC~t~v~~GM~V~T~s   81 (82)
T PF13510_consen   63 NVRACSTPVEDGMVVETQS   81 (82)
T ss_dssp             EEETTT-B--TTEEEE---
T ss_pred             ceEcccCCCcCCcEEEEeE
Confidence            3689999999999998653

>PRK08166 NADH dehydrogenase subunit G; Validated

Probab=98.98  E-value=7.1e-10  Score=101.74  Aligned_cols=75  Identities=21%  Similarity=0.528  Sum_probs=63.0

Q ss_pred             EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEee
Q 031979           57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTC  130 (149)
Q Consensus        57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaC  130 (149)
                      |+| ..+|  +.+++++|+|||+|++++||.||+.|.      .|.|+.|+|+|.+|..+           ...+++++|
T Consensus         2 ~~i-~idg--~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~~-----------~~~~~~~aC   67 (847)
T PRK08166          2 ATI-HVDG--KEYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPED-----------TRGRLVMSC   67 (847)
T ss_pred             eEE-EECC--EEEEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCcc-----------CCCCcccCc
Confidence            344 2578  789999999999999999999999998      69999999999988431           224678999


Q ss_pred             eeEEcCCeEEEecCC
Q 031979          131 VAYPTSDCVIYTHKE  145 (149)
Q Consensus       131 q~~~~~d~~I~~~~~  145 (149)
                      ++.+..+|+|.+..+
T Consensus        68 ~~~v~~gm~v~t~~~   82 (847)
T PRK08166         68 MTPATDGTFISIDDP   82 (847)
T ss_pred             CCCCCCCCEEEeCCH
Confidence            999999999988654

>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional

Probab=98.87  E-value=5.1e-09  Score=85.36  Aligned_cols=73  Identities=22%  Similarity=0.505  Sum_probs=61.5

Q ss_pred             eeEEEEEcCCCCeEEEEc-CCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCe
Q 031979           54 VYKVKLIGPNGEENEFDA-PDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGF  126 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v-~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~  126 (149)
                      .++|.+. .||  +++++ ++|+|||+|++++||.||+-|.      .|.|..|.|.| +|.               .+.
T Consensus        66 ~~~~~I~-IDG--k~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEV-eG~---------------~~l  126 (297)
T PTZ00305         66 KPRAIMF-VNK--RPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQV-DGT---------------QNL  126 (297)
T ss_pred             CCceEEE-ECC--EEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEE-CCC---------------cCc
Confidence            5677774 789  89999 9999999999999999999998      58999999988 342               235


Q ss_pred             EEeeeeEEcCCeEEEecCC
Q 031979          127 VLTCVAYPTSDCVIYTHKE  145 (149)
Q Consensus       127 ~LaCq~~~~~d~~I~~~~~  145 (149)
                      .-+|.+.+...|+|.+..+
T Consensus       127 v~AC~tpV~eGM~V~T~Se  145 (297)
T PTZ00305        127 VVSCATVALPGMSIITDSR  145 (297)
T ss_pred             ccccCCcCCCCCEEEeCCH
Confidence            6799999999999988654

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

Probab=98.83  E-value=4.1e-09  Score=85.23  Aligned_cols=66  Identities=20%  Similarity=0.338  Sum_probs=51.7

Q ss_pred             cCCCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCCcee--------EEE-EEcCCCCeEEEEcCCCchHHHHHH
Q 031979           14 AAPRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAMAVY--------KVK-LIGPNGEENEFDAPDDAYIIDSAE   82 (149)
Q Consensus        14 ~~~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~~~~--------~V~-~~~~~G~~~~~~v~~g~tLLea~~   82 (149)
                      ..|..++++|+|||.+ |++|+..++++|++++++|+|.+...        ... + ..+|  +.+.+++|+||||+++
T Consensus       191 ~~~~~~r~~y~CGp~~fm~av~~~l~~~g~~~~~vh~E~F~~~~~~~~~~~~~~~~-~~s~--~~~~~~~g~t~lea~~  266 (266)
T COG1018         191 AAPDGGREVYLCGPGPFMQAVRLALEALGVPDDRVHLEGFGPMLKDTAALLPFTTL-ARSG--KEVRVPPGQTLLEAAE  266 (266)
T ss_pred             cCCCCCCEEEEECCHHHHHHHHHHHHHcCCChhcEEEeecCCCCccccccccchhh-cccc--ceEecCCCchHHHhhC
Confidence            3444459999999999 89999999999999999988743211        111 3 3567  7899999999999874

>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional

Probab=98.73  E-value=3.7e-08  Score=85.30  Aligned_cols=60  Identities=27%  Similarity=0.498  Sum_probs=50.8

Q ss_pred             EEEEcCCCchHHHHHHH------cCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcCCeEE
Q 031979           67 NEFDAPDDAYIIDSAED------TGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVI  140 (149)
Q Consensus        67 ~~~~v~~g~tLLea~~~------~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~d~~I  140 (149)
                      .++++++|+|||++|++      .++..+++|+.|.||+|.+++ +|.                 .+|+|++.+.++++|
T Consensus        23 ~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~-----------------~~laC~~~~~~~~~i   84 (486)
T PRK06259         23 YEVPVKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTI-NGE-----------------PVLACKTEVEDGMII   84 (486)
T ss_pred             EEEeCCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEE-CCe-----------------EecccccCCCCCCEE
Confidence            45667799999999995      666789999999999999985 663                 478999999999999


Q ss_pred             EecC
Q 031979          141 YTHK  144 (149)
Q Consensus       141 ~~~~  144 (149)
                      +...
T Consensus        85 ~~~~   88 (486)
T PRK06259         85 EPLD   88 (486)
T ss_pred             EecC
Confidence            8764

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.57  E-value=1.1e-07  Score=85.15  Aligned_cols=71  Identities=27%  Similarity=0.528  Sum_probs=59.4

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEe
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLT  129 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~La  129 (149)
                      .|+| ..||  +.+++++|+|||++++++|+.||..|.      .|.|+.|.|+| +|.               .+...+
T Consensus         3 ~v~~-~idg--~~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v-~g~---------------~~~~~a   63 (652)
T PRK12814          3 TISL-TING--RSVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEI-KGK---------------NRFVPA   63 (652)
T ss_pred             eEEE-EECC--EEEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEE-CCC---------------cceecC
Confidence            3555 3588  899999999999999999999999997      69999999987 341               135789


Q ss_pred             eeeEEcCCeEEEecCC
Q 031979          130 CVAYPTSDCVIYTHKE  145 (149)
Q Consensus       130 Cq~~~~~d~~I~~~~~  145 (149)
                      |++.+..+|.|.+..+
T Consensus        64 C~t~~~~Gm~v~t~~~   79 (652)
T PRK12814         64 CSTAVSEGMVIETENA   79 (652)
T ss_pred             cCCCCCCCCEEEeCcH
Confidence            9999999999988654

>PRK09130 NADH dehydrogenase subunit G; Validated

Probab=98.49  E-value=2.3e-07  Score=83.73  Aligned_cols=71  Identities=31%  Similarity=0.581  Sum_probs=58.2

Q ss_pred             EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEee
Q 031979           57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTC  130 (149)
Q Consensus        57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaC  130 (149)
                      |+| ..||  +++++++|+|||+|++++||.||+-|.      .|.|..|.|.|..+.               ...+-+|
T Consensus         2 ~~~-~Idg--~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~---------------~~~~~sC   63 (687)
T PRK09130          2 VKL-KVDG--KEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGP---------------PKPVASC   63 (687)
T ss_pred             eEE-EECC--EEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCC---------------CCccccc
Confidence            445 3588  899999999999999999999999997      799999999984211               1235589


Q ss_pred             eeEEcCCeEEEecCC
Q 031979          131 VAYPTSDCVIYTHKE  145 (149)
Q Consensus       131 q~~~~~d~~I~~~~~  145 (149)
                      .+.+...|+|.+..+
T Consensus        64 ~~~v~~gm~v~T~s~   78 (687)
T PRK09130         64 AMPVGEGMVIFTNTP   78 (687)
T ss_pred             CCCCCCCCEEEeCCH
Confidence            998898999988654

>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]

Probab=98.45  E-value=2.8e-07  Score=83.06  Aligned_cols=70  Identities=29%  Similarity=0.610  Sum_probs=56.8

Q ss_pred             EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEee
Q 031979           57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTC  130 (149)
Q Consensus        57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaC  130 (149)
                      +|+ ..||  +++++++|+|||+|++++||+||+-|.      .|.|..|.|.+..+.                ..+-+|
T Consensus         2 ~tI-~IDG--~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~----------------k~~~SC   62 (693)
T COG1034           2 VTI-TIDG--KEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAP----------------KLVASC   62 (693)
T ss_pred             eEE-EECC--EEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCC----------------cccccc
Confidence            344 2588  899999999999999999999999998      599999999875431                346789


Q ss_pred             eeEEcCCeEEEecCC
Q 031979          131 VAYPTSDCVIYTHKE  145 (149)
Q Consensus       131 q~~~~~d~~I~~~~~  145 (149)
                      .+.+..+++|.+..+
T Consensus        63 ~tpv~dGM~I~T~s~   77 (693)
T COG1034          63 ATPVTDGMVISTNSE   77 (693)
T ss_pred             ccccCCCeEEecCCH
Confidence            997777888877554

>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G

Probab=98.34  E-value=7.3e-07  Score=79.21  Aligned_cols=67  Identities=27%  Similarity=0.509  Sum_probs=56.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEc
Q 031979           62 PNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPT  135 (149)
Q Consensus        62 ~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~  135 (149)
                      .||  +++++++|+|||++++++||.||+-|.      .|.|..|.|+| +|...              ..+.+|.+.+.
T Consensus         3 idg--~~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v-~g~~~--------------~~~~aC~~~~~   65 (603)
T TIGR01973         3 IDG--KELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEV-EKFPD--------------KPVASCATPVT   65 (603)
T ss_pred             ECC--EEEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEE-CCCCC--------------CcccccCCCCC
Confidence            478  899999999999999999999999997      89999999997 33110              14779999999


Q ss_pred             CCeEEEecCC
Q 031979          136 SDCVIYTHKE  145 (149)
Q Consensus       136 ~d~~I~~~~~  145 (149)
                      .+|+|.+..+
T Consensus        66 ~gm~v~t~~~   75 (603)
T TIGR01973        66 DGMKISTNSE   75 (603)
T ss_pred             CCCEEEeCCH
Confidence            9999988653

This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.

>PRK07860 NADH dehydrogenase subunit G; Validated

Probab=98.30  E-value=1.3e-06  Score=80.17  Aligned_cols=69  Identities=29%  Similarity=0.536  Sum_probs=58.0

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEe
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLT  129 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~La  129 (149)
                      .|+| ..||  +++++++|+|||+|++++||.||+-|.      .|.|..|.|.| +|.               .+.+.+
T Consensus         4 ~v~~-~idg--~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev-~g~---------------~~~~~a   64 (797)
T PRK07860          4 LVTL-TIDG--VEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEV-EGQ---------------RKPQAS   64 (797)
T ss_pred             eEEE-EECC--EEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEE-CCC---------------cccccc
Confidence            3555 3689  899999999999999999999999997      79999999998 331               123569


Q ss_pred             eeeEEcCCeEEEec
Q 031979          130 CVAYPTSDCVIYTH  143 (149)
Q Consensus       130 Cq~~~~~d~~I~~~  143 (149)
                      |.+.+...|+|+..
T Consensus        65 C~t~v~~gm~V~t~   78 (797)
T PRK07860         65 CTTTVTDGMVVKTQ   78 (797)
T ss_pred             cCCCCCCCcEEEeC
Confidence            99999999999885

>PRK08493 NADH dehydrogenase subunit G; Validated

Probab=98.29  E-value=1.4e-06  Score=80.11  Aligned_cols=68  Identities=26%  Similarity=0.505  Sum_probs=56.5

Q ss_pred             EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEee
Q 031979           57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTC  130 (149)
Q Consensus        57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaC  130 (149)
                      |+| ..||  +++++++|+|||++++++||.||+-|.      .|.|+.|.|.| +|.                 .+++|
T Consensus         2 v~i-~IdG--~~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV-~G~-----------------~~~AC   60 (819)
T PRK08493          2 ITI-TING--KECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEA-DGK-----------------RVYSC   60 (819)
T ss_pred             eEE-EECC--EEEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEE-CCE-----------------Eeccc
Confidence            455 3688  899999999999999999999998774      69999999987 341                 16699


Q ss_pred             eeEEcCCeEEEecCC
Q 031979          131 VAYPTSDCVIYTHKE  145 (149)
Q Consensus       131 q~~~~~d~~I~~~~~  145 (149)
                      .+.+...|+|.+..+
T Consensus        61 ~t~v~dGM~V~T~s~   75 (819)
T PRK08493         61 NTKAKEGMNILTNTP   75 (819)
T ss_pred             cCCCCCCCEEEecCH
Confidence            999999999988654

>PRK09129 NADH dehydrogenase subunit G; Validated

Probab=98.27  E-value=1.2e-06  Score=79.86  Aligned_cols=70  Identities=21%  Similarity=0.521  Sum_probs=58.0

Q ss_pred             EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEee
Q 031979           57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTC  130 (149)
Q Consensus        57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaC  130 (149)
                      |+| ..||  +++++++|+|||+|++++||.||+-|.      .|.|..|.|+| +|.               .+.+.+|
T Consensus         2 ~~~-~idg--~~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v-~~~---------------~~~~~aC   62 (776)
T PRK09129          2 VEI-EIDG--KKVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEV-EKA---------------PKPLPAC   62 (776)
T ss_pred             eEE-EECC--EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEE-CCC---------------CCcCccc
Confidence            455 3588  899999999999999999999999999      59999999997 331               1246799


Q ss_pred             eeEEcCCeEEEecCC
Q 031979          131 VAYPTSDCVIYTHKE  145 (149)
Q Consensus       131 q~~~~~d~~I~~~~~  145 (149)
                      .+.+..+|+|.+..+
T Consensus        63 ~~~~~~gm~v~t~~~   77 (776)
T PRK09129         63 ATPVTDGMKVFTRSE   77 (776)
T ss_pred             CCCCCCCCEEEcCCH
Confidence            999999999988644

>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B

Probab=98.26  E-value=9.8e-07  Score=62.68  Aligned_cols=52  Identities=25%  Similarity=0.544  Sum_probs=38.4

Q ss_pred             EEEEcCCCchHHHHHHHc------CCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcC
Q 031979           67 NEFDAPDDAYIIDSAEDT------GMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTS  136 (149)
Q Consensus        67 ~~~~v~~g~tLLea~~~~------Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~  136 (149)
                      .+++++++.|+|++|..-      -+...++|+.|+||+|.++| .|.                 .+|||.+....
T Consensus        21 y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~I-NG~-----------------~~LAC~t~v~~   78 (110)
T PF13085_consen   21 YEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRI-NGR-----------------PRLACKTQVDD   78 (110)
T ss_dssp             EEEEGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEE-TTE-----------------EEEGGGSBGGG
T ss_pred             EEecCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEE-CCc-----------------eecceeeEchh
Confidence            578888999999999652      46688999999999999975 553                 37788777654

...

>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional

Probab=98.23  E-value=1.6e-06  Score=69.13  Aligned_cols=41  Identities=20%  Similarity=0.547  Sum_probs=33.2

Q ss_pred             EEEEcCCCchHHHHHHHcC------CCCCCCCCCcccCCcEEEEeeCc
Q 031979           67 NEFDAPDDAYIIDSAEDTG------MELPYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        67 ~~~~v~~g~tLLea~~~~G------i~i~~~C~~G~CGtC~v~v~~G~  108 (149)
                      .+++++++.|+|++|..-.      +...++|+.|+||+|.++| .|.
T Consensus        26 y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~I-NG~   72 (239)
T PRK13552         26 YQLEETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVI-NGR   72 (239)
T ss_pred             EEecCCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEE-CCe
Confidence            5677779999999997632      5577999999999999975 663

>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed

Probab=98.23  E-value=1.9e-06  Score=69.13  Aligned_cols=41  Identities=15%  Similarity=0.334  Sum_probs=33.0

Q ss_pred             EEEEcCCCchHHHHHHHc-------------CCCCCCCCCCcccCCcEEEEeeCc
Q 031979           67 NEFDAPDDAYIIDSAEDT-------------GMELPYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        67 ~~~~v~~g~tLLea~~~~-------------Gi~i~~~C~~G~CGtC~v~v~~G~  108 (149)
                      .++++.++.|||++|..-             -+...++||.|+||+|.++| .|.
T Consensus        25 y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~I-NG~   78 (249)
T PRK08640         25 FEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVI-NGK   78 (249)
T ss_pred             EEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEE-CCc
Confidence            566777999999999753             15678899999999999975 664

>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional

Probab=98.17  E-value=4.6e-06  Score=62.77  Aligned_cols=52  Identities=17%  Similarity=0.424  Sum_probs=45.5

Q ss_pred             eEEEEEcCCCCeEEEEcCCCchHHHHHHHcCC-CCCCCCCCcccCCcEEEEeeCc
Q 031979           55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGM-ELPYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi-~i~~~C~~G~CGtC~v~v~~G~  108 (149)
                      ..|+| ..||+.++++++++++||+.|++.|+ ....+|+.|.||.|.|.| .|.
T Consensus         7 ~~i~~-~vNG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~~G~CGACtVlv-dg~   59 (159)
T PRK09908          7 ITIEC-TINGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLV-DGT   59 (159)
T ss_pred             eeEEE-EECCEEEEEecCCCCcHHHHHHHcCCCCCCCCcCCCCCCCcEEEE-CCc
Confidence            45777 47898888999999999999999987 699999999999999965 664

>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional

Probab=98.15  E-value=4.1e-06  Score=65.91  Aligned_cols=54  Identities=20%  Similarity=0.503  Sum_probs=44.5

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeCcc
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSGSV  109 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G~v  109 (149)
                      ...|+| ..||+.++++++++++||++|+++ |+ ....+|+.|.||.|.| +++|..
T Consensus        49 ~~~i~~-~VNG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTV-lVdG~~  104 (217)
T PRK11433         49 ISPVTL-KVNGKTEQLEVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTV-LVNGRR  104 (217)
T ss_pred             CceEEE-EECCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEE-EECCEE
Confidence            345777 478987889999999999999985 54 4889999999999999 557743

>PRK12386 fumarate reductase iron-sulfur subunit; Provisional

Probab=98.14  E-value=5.3e-06  Score=66.76  Aligned_cols=42  Identities=17%  Similarity=0.616  Sum_probs=35.5

Q ss_pred             eEEEEcCCCchHHHHHHHcCC------CCCCCCCCcccCCcEEEEeeCc
Q 031979           66 ENEFDAPDDAYIIDSAEDTGM------ELPYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        66 ~~~~~v~~g~tLLea~~~~Gi------~i~~~C~~G~CGtC~v~v~~G~  108 (149)
                      ..+++++++.|||++|+.-+.      ...++|+.|+||+|.+.| .|.
T Consensus        21 ~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~I-nG~   68 (251)
T PRK12386         21 DYTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEI-NGR   68 (251)
T ss_pred             EEEEeCCCCCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEE-Ccc
Confidence            367888899999999999764      678999999999999965 663

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional

Probab=98.07  E-value=2.5e-06  Score=69.32  Aligned_cols=55  Identities=13%  Similarity=0.230  Sum_probs=43.0

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGA   96 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~   96 (149)
                      .+.++|+|||.+ |+++++.|.++|+++++++++        + .                          -.-.|+.|.
T Consensus       211 ~~~~vyiCGP~~m~~~v~~~L~~~Gv~~~~i~~~--------l-~--------------------------~~m~cg~g~  255 (289)
T PRK08345        211 KNTYAAICGPPVMYKFVFKELINRGYRPERIYVT--------L-E--------------------------RRMRCGIGK  255 (289)
T ss_pred             cccEEEEECCHHHHHHHHHHHHHcCCCHHHEEEE--------e-h--------------------------hcccccCcc
Confidence            457899999999 599999999999997776632        1 0                          013699999


Q ss_pred             cCCcEEEEeeC
Q 031979           97 CSTCAGQMVSG  107 (149)
Q Consensus        97 CGtC~v~v~~G  107 (149)
                      ||.|+|....|
T Consensus       256 c~~c~~~~~~~  266 (289)
T PRK08345        256 CGHCIVGTSTS  266 (289)
T ss_pred             cCCCccCCCCc
Confidence            99999986554

>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=98.06  E-value=8.3e-06  Score=67.86  Aligned_cols=42  Identities=21%  Similarity=0.457  Sum_probs=36.4

Q ss_pred             eEEEEcCCCchHHHHHHHcCCCCC------CCCCCcccCCcEEEEeeCc
Q 031979           66 ENEFDAPDDAYIIDSAEDTGMELP------YSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        66 ~~~~~v~~g~tLLea~~~~Gi~i~------~~C~~G~CGtC~v~v~~G~  108 (149)
                      ++++++++|+|||++|.+.++.++      .+|+.|+||+|.|+| +|.
T Consensus        20 ~~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~i-nG~   67 (329)
T PRK12577         20 TYTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRI-NGR   67 (329)
T ss_pred             EEEEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEE-CCe
Confidence            367889999999999999998874      569999999999987 564

>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit

Probab=98.03  E-value=1.1e-05  Score=60.11  Aligned_cols=50  Identities=28%  Similarity=0.566  Sum_probs=42.2

Q ss_pred             EEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeCc
Q 031979           57 VKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        57 V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G~  108 (149)
                      |+| ..||+.++++++++++||+++++. |+ .+..+|+.|.||+|.|.| +|+
T Consensus         2 i~~-~vNG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlv-dg~   53 (148)
T TIGR03193         2 LRL-TVNGRWREDAVADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLV-DGR   53 (148)
T ss_pred             EEE-EECCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEE-CCe
Confidence            456 368888889999999999999984 76 599999999999999965 664

4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=98.00  E-value=1.1e-05  Score=63.39  Aligned_cols=51  Identities=16%  Similarity=0.309  Sum_probs=38.4

Q ss_pred             CCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCc
Q 031979           17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAG   95 (149)
Q Consensus        17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G   95 (149)
                      ....++|+|||.+ |+++++.|++.|+ +.+++.|.                 |.                    .|+.|
T Consensus       165 ~~~~~vyicGp~~m~~~~~~~L~~~g~-~~~i~~e~-----------------f~--------------------~cg~g  206 (233)
T cd06220         165 EEYDAIYVCGPEIMMYKVLEILDERGV-RAQFSLER-----------------YM--------------------KCGIG  206 (233)
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHhcCC-cEEEEecc-----------------cc--------------------cCcCC
Confidence            3446899999999 5999999998888 23333221                 11                    89999


Q ss_pred             ccCCcEEEEe
Q 031979           96 ACSTCAGQMV  105 (149)
Q Consensus        96 ~CGtC~v~v~  105 (149)
                      .||.|.+...
T Consensus       207 ~C~~C~v~~~  216 (233)
T cd06220         207 ICGSCCIDPT  216 (233)
T ss_pred             CcCccEeccC
Confidence            9999999874

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>PRK12385 fumarate reductase iron-sulfur subunit; Provisional

Probab=97.96  E-value=1e-05  Score=64.75  Aligned_cols=41  Identities=17%  Similarity=0.429  Sum_probs=32.4

Q ss_pred             EEEEcCCCchHHHHHHHc------CCCCCCCCCCcccCCcEEEEeeCc
Q 031979           67 NEFDAPDDAYIIDSAEDT------GMELPYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        67 ~~~~v~~g~tLLea~~~~------Gi~i~~~C~~G~CGtC~v~v~~G~  108 (149)
                      ..++++++.|||++|...      .+...++|+.|+||+|.++| .|.
T Consensus        27 ~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~I-nG~   73 (244)
T PRK12385         27 YEVPYDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NNV   73 (244)
T ss_pred             EEeeCCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceE-Ccc
Confidence            567777999999999553      23456899999999999976 563

>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated

Probab=97.95  E-value=7.5e-06  Score=65.81  Aligned_cols=42  Identities=21%  Similarity=0.457  Sum_probs=32.9

Q ss_pred             EEEE-cCCCchHHHHHHHc----------CCCCCCCCCCcccCCcEEEEeeCcc
Q 031979           67 NEFD-APDDAYIIDSAEDT----------GMELPYSCRAGACSTCAGQMVSGSV  109 (149)
Q Consensus        67 ~~~~-v~~g~tLLea~~~~----------Gi~i~~~C~~G~CGtC~v~v~~G~v  109 (149)
                      .+|+ +.++.|+|++|..-          .+...++|+.|+||+|.++| .|.+
T Consensus        22 y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~I-NG~p   74 (250)
T PRK07570         22 YEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVI-NGRP   74 (250)
T ss_pred             EEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEE-CCcc
Confidence            3454 45899999999642          36788999999999999965 7765

>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=97.92  E-value=4.1e-05  Score=62.46  Aligned_cols=42  Identities=17%  Similarity=0.364  Sum_probs=35.4

Q ss_pred             eEEEEcCCCchHHHHHHHcCCCC------CCCCCCcccCCcEEEEeeCc
Q 031979           66 ENEFDAPDDAYIIDSAEDTGMEL------PYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        66 ~~~~~v~~g~tLLea~~~~Gi~i------~~~C~~G~CGtC~v~v~~G~  108 (149)
                      .+.+++++|+|||++|.+.+..+      .++|+.|+||+|.+.| +|.
T Consensus        26 ~~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~I-NG~   73 (279)
T PRK12576         26 EYKVKVDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKI-NGE   73 (279)
T ss_pred             EEEEecCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEE-CCc
Confidence            36788899999999999977543      4899999999999987 664

>PRK08221 anaerobic sulfite reductase subunit B; Provisional

Probab=97.91  E-value=1e-05  Score=64.93  Aligned_cols=31  Identities=16%  Similarity=0.028  Sum_probs=27.2

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCccc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFK   48 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~   48 (149)
                      .+.++|+|||.+ |+++++.|++.|+++++++
T Consensus       191 ~~~~vylCGp~~mv~~~~~~L~~~Gv~~~~i~  222 (263)
T PRK08221        191 DNMQVIVVGPPIMMKFTVLEFLKRGIKEENIW  222 (263)
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHcCCCHHHEE
Confidence            568899999999 5999999999999977665

>TIGR02911 sulfite_red_B sulfite reductase, subunit B

Probab=97.87  E-value=1.6e-05  Score=63.73  Aligned_cols=32  Identities=16%  Similarity=0.052  Sum_probs=27.2

Q ss_pred             CCCCeEEEcCCch-HHHHHHHHHHcCCCCCccc
Q 031979           17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFK   48 (149)
Q Consensus        17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~   48 (149)
                      ..+.++|+|||.+ |+++++.|.+.|+++++++
T Consensus       188 ~~~~~v~lCGp~~mv~~~~~~L~~~Gv~~~~i~  220 (261)
T TIGR02911       188 IEEVQAIVVGPPIMMKFTVQELLKKGIKEENIW  220 (261)
T ss_pred             ccceEEEEECCHHHHHHHHHHHHHcCCCHHHEE
Confidence            3467899999999 5999999999999977655

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.

>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]

Probab=97.84  E-value=3.8e-05  Score=69.65  Aligned_cols=66  Identities=24%  Similarity=0.579  Sum_probs=50.5

Q ss_pred             EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEee
Q 031979           57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTC  130 (149)
Q Consensus        57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaC  130 (149)
                      |++ +.+|  +++++++|+|||+++.++||.||+-|.      -|.|-+|.|. ++|.                 ..-+|
T Consensus         6 i~v-tidg--~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVE-idG~-----------------l~rsC   64 (978)
T COG3383           6 ITV-TIDG--RSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVE-IDGK-----------------LVRSC   64 (978)
T ss_pred             EEE-EECC--eEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEE-ecCc-----------------eeccc
Confidence            555 3578  899999999999999999999999998      3889999988 4664                 23356


Q ss_pred             eeEEcCCeEEEec
Q 031979          131 VAYPTSDCVIYTH  143 (149)
Q Consensus       131 q~~~~~d~~I~~~  143 (149)
                      .+.+...++|.+.
T Consensus        65 sT~v~dGm~v~t~   77 (978)
T COG3383          65 STPVEDGMVVRTN   77 (978)
T ss_pred             cccccCCcEEecc
Confidence            6655555665543

>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit

Probab=97.80  E-value=2e-05  Score=64.18  Aligned_cols=40  Identities=28%  Similarity=0.615  Sum_probs=30.0

Q ss_pred             EEEcCC-CchHHHHHHHcC------CCCCCCCCCcccCCcEEEEeeCc
Q 031979           68 EFDAPD-DAYIIDSAEDTG------MELPYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        68 ~~~v~~-g~tLLea~~~~G------i~i~~~C~~G~CGtC~v~v~~G~  108 (149)
                      ++++.+ +.|+|++|..-.      +...++|+.|+||+|.++| .|.
T Consensus        65 ~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~I-NG~  111 (276)
T PLN00129         65 KVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNI-DGK  111 (276)
T ss_pred             EeCCCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEE-CCc
Confidence            344433 799999997622      4578999999999999975 664

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed

Probab=97.77  E-value=4.8e-05  Score=60.32  Aligned_cols=51  Identities=18%  Similarity=0.263  Sum_probs=38.2

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGA   96 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~   96 (149)
                      ...+||+|||.+ |+++++.+.+.|++           ..+.+            ++               ...|+.|.
T Consensus       180 ~~~~vyvCGp~~m~~~v~~~l~~~Gv~-----------~~~~~------------e~---------------~m~cg~G~  221 (250)
T PRK00054        180 EYDAIYSCGPEIMMKKVVEILKEKKVP-----------AYVSL------------ER---------------RMKCGIGA  221 (250)
T ss_pred             CCCEEEEeCCHHHHHHHHHHHHHcCCc-----------EEEEE------------cc---------------cccCcCcc
Confidence            346899999999 59999999988773           11222            11               45899999


Q ss_pred             cCCcEEEEee
Q 031979           97 CSTCAGQMVS  106 (149)
Q Consensus        97 CGtC~v~v~~  106 (149)
                      ||+|.+.+..
T Consensus       222 C~~C~~~~~~  231 (250)
T PRK00054        222 CGACVCDTET  231 (250)
T ss_pred             cCcCCcccCC
Confidence            9999998544

>TIGR03198 pucE xanthine dehydrogenase E subunit

Probab=97.73  E-value=7.2e-05  Score=55.94  Aligned_cols=50  Identities=22%  Similarity=0.411  Sum_probs=42.1

Q ss_pred             EEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeCc
Q 031979           57 VKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        57 V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G~  108 (149)
                      |+| ..||+..++.++++++|++.+++. |+ ....+|+.|.||.|.|.| +|.
T Consensus         4 i~f-~vNG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~~G~CGACtVlv-dG~   55 (151)
T TIGR03198         4 FRF-TVNGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLI-DGK   55 (151)
T ss_pred             EEE-EECCEEEEeecCCCcHHHHHHHhccCCCCCCCCCCCCcCCccEEEE-CCc
Confidence            666 368987888889999999999985 76 488999999999999966 664

This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.

>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=97.72  E-value=2.9e-05  Score=61.89  Aligned_cols=51  Identities=22%  Similarity=0.460  Sum_probs=36.4

Q ss_pred             EEEEcC--C-CchHHHHHHHcC-----CCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEc
Q 031979           67 NEFDAP--D-DAYIIDSAEDTG-----MELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPT  135 (149)
Q Consensus        67 ~~~~v~--~-g~tLLea~~~~G-----i~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~  135 (149)
                      .+++++  + +.|+|++|..-.     +...++|+.|+||+|.++| .|.                 .+|||+++..
T Consensus        23 ~~y~v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr~giCGsCa~~i-NG~-----------------~~LaC~t~~~   81 (235)
T PRK12575         23 QRYEIAPRAEDRMLLDVLGRVKAQDETLSYRRSCREGICGSDAMNI-NGR-----------------NGLACLTNMQ   81 (235)
T ss_pred             EEEEecCCCCCCcHHHHHHHHHhcCCCeeeeccCCCCCCCCCeeEE-CCe-----------------EcchhhCcHh
Confidence            345554  4 468999996532     4467999999999999975 663                 4677777665

>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein

Probab=97.68  E-value=3.8e-05  Score=60.28  Aligned_cols=41  Identities=27%  Similarity=0.571  Sum_probs=34.1

Q ss_pred             EEEEcCCCchHHHHHHHcC------CCCCCCCCCcccCCcEEEEeeCc
Q 031979           67 NEFDAPDDAYIIDSAEDTG------MELPYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        67 ~~~~v~~g~tLLea~~~~G------i~i~~~C~~G~CGtC~v~v~~G~  108 (149)
                      .++++++|+|||++|.+.+      +....+|+.|+||+|.|+| +|.
T Consensus        17 ~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~v-nG~   63 (220)
T TIGR00384        17 YEVPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNV-NGK   63 (220)
T ss_pred             EEEeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEE-CCE
Confidence            5677889999999999855      3456899999999999975 664

Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.

>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]

Probab=97.68  E-value=3.2e-05  Score=61.58  Aligned_cols=42  Identities=24%  Similarity=0.488  Sum_probs=32.7

Q ss_pred             EEEEcCCCchHHHHHHHc------CCCCCCCCCCcccCCcEEEEeeCcc
Q 031979           67 NEFDAPDDAYIIDSAEDT------GMELPYSCRAGACSTCAGQMVSGSV  109 (149)
Q Consensus        67 ~~~~v~~g~tLLea~~~~------Gi~i~~~C~~G~CGtC~v~v~~G~v  109 (149)
                      .+++..+|.|+|++|..-      .+...++||.|+||+|.+.| .|..
T Consensus        22 yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~I-NG~p   69 (234)
T COG0479          22 YEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNI-NGKP   69 (234)
T ss_pred             EEecCCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEE-CCcc
Confidence            345556999999999652      35588999999999999965 6643

>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

Probab=97.58  E-value=4.9e-05  Score=61.31  Aligned_cols=35  Identities=6%  Similarity=0.020  Sum_probs=30.6

Q ss_pred             CCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      ..+.++|+|||.+ |+++++.|++.|++.+++|+|.
T Consensus       247 ~~~~~vyiCGP~~m~~~~~~~l~~~Gv~~~~i~~e~  282 (283)
T cd06188         247 PEDIEFYLCGPPPMNSAVIKMLDDLGVPRENIAFDD  282 (283)
T ss_pred             CCCeEEEEECCHHHHHHHHHHHHHcCCCHHHeeccC
Confidence            3467899999999 6999999999999999988763

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

Probab=97.54  E-value=0.00025  Score=56.16  Aligned_cols=51  Identities=20%  Similarity=0.373  Sum_probs=38.7

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGA   96 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~   96 (149)
                      .+.+||+|||.+ |+++++.|++.|++           ..+.+   +                        -...|+.|.
T Consensus       179 ~~~~vyiCGp~~mv~~~~~~L~~~Gv~-----------~~~~~---~------------------------~~~~~~~g~  220 (246)
T cd06218         179 RPDVVYACGPEPMLKAVAELAAERGVP-----------CQVSL---E------------------------ERMACGIGA  220 (246)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHhcCCC-----------EEEEe---c------------------------ccccCccce
Confidence            468999999999 59999999998886           11111   1                        124699999


Q ss_pred             cCCcEEEEee
Q 031979           97 CSTCAGQMVS  106 (149)
Q Consensus        97 CGtC~v~v~~  106 (149)
                      ||.|+....+
T Consensus       221 c~~c~~~~~~  230 (246)
T cd06218         221 CLGCVVKTKD  230 (246)
T ss_pred             ecccEEEeec
Confidence            9999998764

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]

Probab=97.52  E-value=0.00024  Score=53.31  Aligned_cols=52  Identities=29%  Similarity=0.551  Sum_probs=43.1

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeCcc
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSGSV  109 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G~v  109 (149)
                      .|+| +.||+.+++++.++++||++|++. |+ ...++|+.|.||.|.|. +.|+.
T Consensus         3 ~i~l-tvNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVl-vDG~~   56 (156)
T COG2080           3 PITL-TVNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVL-VDGEA   56 (156)
T ss_pred             cEEE-EECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEE-ECCeE
Confidence            4666 468988999999999999999954 55 48999999999999985 57753

>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

Probab=97.51  E-value=7.7e-05  Score=57.47  Aligned_cols=35  Identities=14%  Similarity=0.109  Sum_probs=30.1

Q ss_pred             CCCCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979           16 PRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS   50 (149)
Q Consensus        16 ~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~   50 (149)
                      +....++|+|||.+ |++++++|.+.|+++++|++|
T Consensus       183 ~~~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~i~~E  218 (218)
T cd06196         183 TDFNQHFYVCGPPPMEEAINGALKELGVPEDSIVFE  218 (218)
T ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHcCCCHHHEecC
Confidence            33457899999999 599999999999999998765

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

Probab=97.49  E-value=8.2e-05  Score=57.71  Aligned_cols=34  Identities=15%  Similarity=-0.020  Sum_probs=30.4

Q ss_pred             CCCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979           17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS   50 (149)
Q Consensus        17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~   50 (149)
                      ..+.++|+|||.+ |+++++.|++.|+++++||.|
T Consensus       188 ~~~~~v~vCGp~~m~~~~~~~l~~~G~~~~~i~~e  222 (224)
T cd06189         188 LSDFDVYACGSPEMVYAARDDFVEKGLPEENFFSD  222 (224)
T ss_pred             ccccEEEEECCHHHHHHHHHHHHHcCCCHHHcccC
Confidence            3567899999999 699999999999999998876

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.

>PRK08051 fre FMN reductase; Validated

Probab=97.48  E-value=7.6e-05  Score=58.46  Aligned_cols=34  Identities=9%  Similarity=0.013  Sum_probs=30.0

Q ss_pred             CCCeEEEcCCch-HHHHHHHH-HHcCCCCCcccccC
Q 031979           18 SKKFSLVKSPAS-LGSTRSVS-KAFGLKCSSFKASA   51 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~-~~~g~~~~~f~~~~   51 (149)
                      .+.++|+|||.+ |+++++.+ .++|+++++|+.+.
T Consensus       193 ~~~~vyicGp~~m~~~v~~~l~~~~G~~~~~i~~e~  228 (232)
T PRK08051        193 AEYDIYIAGRFEMAKIARELFCRERGAREEHLFGDA  228 (232)
T ss_pred             ccCEEEEECCHHHHHHHHHHHHHHcCCCHHHeeccc
Confidence            457899999999 59999999 99999999988764

>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

Probab=97.48  E-value=0.00012  Score=57.38  Aligned_cols=33  Identities=9%  Similarity=0.173  Sum_probs=29.3

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCC------Cccccc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKC------SSFKAS   50 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~------~~f~~~   50 (149)
                      .+..+|+|||.+ |+++++.|.++|+++      .+||+|
T Consensus       200 ~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~~~~~~~~~~E  239 (241)
T cd06195         200 ETSHVMLCGNPQMIDDTQELLKEKGFSKNHRRKPGNITVE  239 (241)
T ss_pred             ccCEEEEeCCHHHHHHHHHHHHHcCCCccccCCCceEEEe
Confidence            567899999999 599999999999998      777776

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.

>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

Probab=97.47  E-value=0.0001  Score=56.88  Aligned_cols=36  Identities=11%  Similarity=0.054  Sum_probs=31.1

Q ss_pred             CCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           16 PRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        16 ~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      +..+.++|+|||.+ |+++++.|.+.|++.++||.+.
T Consensus       184 ~~~~~~vyicGp~~m~~~~~~~L~~~Gv~~~~i~~e~  220 (222)
T cd06194         184 LTRDDVVYLCGAPSMVNAVRRRAFLAGAPMKRIYADP  220 (222)
T ss_pred             ccCCCEEEEeCCHHHHHHHHHHHHHcCCCHHHeeecc
Confidence            34568899999999 6999999999999999988653

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e

>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed

Probab=97.45  E-value=0.00014  Score=57.50  Aligned_cols=42  Identities=24%  Similarity=0.377  Sum_probs=35.3

Q ss_pred             EEEEcC-CCchHHHHHHHcC-CC-----CCCCCCCcccCCcEEEEeeCcc
Q 031979           67 NEFDAP-DDAYIIDSAEDTG-ME-----LPYSCRAGACSTCAGQMVSGSV  109 (149)
Q Consensus        67 ~~~~v~-~g~tLLea~~~~G-i~-----i~~~C~~G~CGtC~v~v~~G~v  109 (149)
                      ++++++ +|+|||++|.+.+ ..     ..++|+.|.||+|.|+| +|..
T Consensus        20 ~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~v-nG~~   68 (232)
T PRK05950         20 YEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNI-NGKN   68 (232)
T ss_pred             EEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEE-CCcC
Confidence            678888 9999999999997 33     36899999999999987 6643

>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

Probab=97.45  E-value=9.8e-05  Score=57.86  Aligned_cols=33  Identities=6%  Similarity=-0.088  Sum_probs=29.8

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS   50 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~   50 (149)
                      .+.++|+|||.+ |+++.++|.++|+++++||.|
T Consensus       203 ~~~~vyvCGp~~m~~~~~~~L~~~Gv~~~~i~~e  236 (238)
T cd06211         203 RGHKAYLCGPPPMIDACIKTLMQGRLFERDIYYE  236 (238)
T ss_pred             ccCEEEEECCHHHHHHHHHHHHHcCCCHHHcccc
Confidence            467899999999 599999999999999998876

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.

>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=97.45  E-value=9.8e-05  Score=57.48  Aligned_cols=34  Identities=9%  Similarity=0.024  Sum_probs=30.2

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      .+.+||+|||.+ |+++.+.|+++|++.++||.|.
T Consensus       196 ~~~~v~~CGp~~~~~~v~~~l~~~G~~~~~i~~e~  230 (232)
T cd06212         196 AGCDVYLCGPPPMIDAALPVLEMSGVPPDQIFYDK  230 (232)
T ss_pred             cCCEEEEECCHHHHHHHHHHHHHcCCCHHHeeecc
Confidence            467899999999 6999999999999999988763

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.

>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

Probab=97.44  E-value=0.00012  Score=56.46  Aligned_cols=36  Identities=11%  Similarity=0.112  Sum_probs=31.1

Q ss_pred             CCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           16 PRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        16 ~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      +..+..+|+|||.+ |+++++.|.+.|++.++++.|.
T Consensus       178 ~~~~~~vyicGp~~m~~~v~~~l~~~Gv~~~~I~~E~  214 (216)
T cd06198         178 DLADADVWFCGPPGMADALEKGLRALGVPARRFHYER  214 (216)
T ss_pred             CcCCCeEEEECcHHHHHHHHHHHHHcCCChHhcchhh
Confidence            34567899999999 5999999999999999988763

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=97.44  E-value=0.00011  Score=57.05  Aligned_cols=34  Identities=9%  Similarity=0.186  Sum_probs=30.1

Q ss_pred             CCCCeEEEcCCchH-HHHHHHHHHcCCCCCccccc
Q 031979           17 RSKKFSLVKSPASL-GSTRSVSKAFGLKCSSFKAS   50 (149)
Q Consensus        17 ~~~~~~y~CGP~~m-~~v~~~~~~~g~~~~~f~~~   50 (149)
                      ..+.++|+|||.+| +++++.|++.|++.++++.|
T Consensus       199 ~~~~~v~icGp~~m~~~v~~~l~~~Gv~~~~i~~E  233 (235)
T cd06217         199 LAGRRVYVCGPPAFVEAATRLLLELGVPRDRIRTE  233 (235)
T ss_pred             ccCCEEEEECCHHHHHHHHHHHHHcCCCHHHEeec
Confidence            35688999999994 99999999999999998765

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=97.42  E-value=0.00037  Score=55.20  Aligned_cols=48  Identities=17%  Similarity=0.388  Sum_probs=36.4

Q ss_pred             CCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCccc
Q 031979           19 KKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGAC   97 (149)
Q Consensus        19 ~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~C   97 (149)
                      ...+|+|||.+ |+++++.+.+.|++           ..+.+   +                        -.-.|+.|.|
T Consensus       180 ~~~vyiCGP~~m~~~~~~~l~~~Gv~-----------~~~s~---e------------------------~~m~Cg~G~C  221 (248)
T cd06219         180 VDLVIAIGPPIMMKAVSELTRPYGIP-----------TVVSL---N------------------------PIMVDGTGMC  221 (248)
T ss_pred             ccEEEEECCHHHHHHHHHHHHHcCCC-----------EEEEe---c------------------------ccccCcccee
Confidence            45799999999 59999999888876           11111   1                        1247999999


Q ss_pred             CCcEEEE
Q 031979           98 STCAGQM  104 (149)
Q Consensus        98 GtC~v~v  104 (149)
                      +.|.++.
T Consensus       222 ~~C~~~~  228 (248)
T cd06219         222 GACRVTV  228 (248)
T ss_pred             eeEEEEe
Confidence            9999985

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,

>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

Probab=97.40  E-value=0.00012  Score=56.98  Aligned_cols=32  Identities=13%  Similarity=0.328  Sum_probs=29.1

Q ss_pred             CCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979           19 KKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS   50 (149)
Q Consensus        19 ~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~   50 (149)
                      +.++|+|||.+ |+++++.+.+.|++.+++++|
T Consensus       197 ~~~vyicGp~~mv~~~~~~l~~~G~~~~~i~~E  229 (231)
T cd06191         197 EREAFICGPAGMMDAVETALKELGMPPERIHTE  229 (231)
T ss_pred             CCeEEEECCHHHHHHHHHHHHHcCCCHHHeeec
Confidence            57899999999 599999999999999998875

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in

>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

Probab=97.39  E-value=0.00013  Score=55.73  Aligned_cols=35  Identities=11%  Similarity=0.199  Sum_probs=30.2

Q ss_pred             CCCCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979           16 PRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS   50 (149)
Q Consensus        16 ~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~   50 (149)
                      +..+..+|+|||.+ |+++++.|.+.|++.++++.|
T Consensus       188 ~~~~~~~yvCGp~~m~~~~~~~L~~~gv~~~~i~~e  223 (223)
T cd00322         188 DDSGALVYICGPPAMAKAVREALVSLGVPEERIHTE  223 (223)
T ss_pred             cccCCEEEEECCHHHHHHHHHHHHHcCCCHHHcccC
Confidence            34568899999999 599999999999999888764

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in

>PRK05713 hypothetical protein; Provisional

Probab=97.38  E-value=0.00012  Score=60.03  Aligned_cols=34  Identities=12%  Similarity=0.092  Sum_probs=30.2

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      .+.++|+|||.+ |+++.+.|.++|+++++||++.
T Consensus       273 ~~~~vyiCGp~~mv~~~~~~L~~~Gv~~~~i~~e~  307 (312)
T PRK05713        273 RQTMALLCGSPASVERFARRLYLAGLPRNQLLADV  307 (312)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHcCCCHHHeeecc
Confidence            347899999999 5999999999999999998764

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=97.37  E-value=0.00014  Score=56.32  Aligned_cols=33  Identities=21%  Similarity=0.404  Sum_probs=29.3

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS   50 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~   50 (149)
                      .+.++|+|||.+ |+++++.+.+.|++.++|++|
T Consensus       196 ~~~~v~icGp~~m~~~~~~~l~~~gv~~~~i~~e  229 (231)
T cd06215         196 KERTVFVCGPAGFMKAVKSLLAELGFPMSRFHQE  229 (231)
T ss_pred             cCCeEEEECCHHHHHHHHHHHHHcCCCHHHeeee
Confidence            347899999999 599999999999999998765

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=97.36  E-value=0.00014  Score=61.91  Aligned_cols=35  Identities=9%  Similarity=0.031  Sum_probs=31.0

Q ss_pred             CCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      ..+.+||+|||.+ |+++++.+.+.|++++++|++.
T Consensus       371 ~~~~~vyiCGP~~m~~av~~~L~~~Gv~~~~I~~E~  406 (409)
T PRK05464        371 PEDCEYYMCGPPMMNAAVIKMLKDLGVEDENILLDD  406 (409)
T ss_pred             CCCeEEEEECCHHHHHHHHHHHHHcCCCHHHEEEcc
Confidence            3467899999999 6999999999999999998764

>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

Probab=97.35  E-value=0.00015  Score=56.31  Aligned_cols=36  Identities=14%  Similarity=0.144  Sum_probs=30.9

Q ss_pred             CCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           16 PRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        16 ~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      +..+.++|+|||.+ |+++++.+.+.|++.++++.|.
T Consensus       190 ~~~~~~v~icGp~~m~~~~~~~l~~~G~~~~~i~~E~  226 (228)
T cd06209         190 NDGDVDVYLCGPPPMVDAVRSWLDEQGIEPANFYYEK  226 (228)
T ss_pred             cCCCcEEEEeCCHHHHHHHHHHHHHcCCCHHHEeeec
Confidence            34567899999999 6999999999999999988763

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=97.33  E-value=0.00017  Score=59.88  Aligned_cols=33  Identities=6%  Similarity=-0.042  Sum_probs=29.7

Q ss_pred             CCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           19 KKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        19 ~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      ..+||+|||.+ |+++++.|.++|+++++||.|.
T Consensus       301 ~~~vy~CGp~~mv~~~~~~L~~~Gv~~~~i~~E~  334 (340)
T PRK11872        301 AFDMYLCGPPPMVEAVKQWLDEQALENYRLYYEK  334 (340)
T ss_pred             CCEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEee
Confidence            46899999999 5999999999999999998764

>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin

Probab=97.32  E-value=0.00016  Score=56.82  Aligned_cols=37  Identities=14%  Similarity=0.137  Sum_probs=32.3

Q ss_pred             CCCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           15 APRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        15 ~~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      .+..+.++|+|||.+ |+++++.|.++|++.++|+.|.
T Consensus       205 ~~~~~~~v~icGp~~m~~~v~~~l~~~G~~~~~i~~e~  242 (247)
T cd06184         205 LLPADADFYLCGPVPFMQAVREGLKALGVPAERIHYEV  242 (247)
T ss_pred             cCCCCCEEEEECCHHHHHHHHHHHHHcCCCHHHeeeec
Confidence            456678999999999 5999999999999999988764

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

Probab=97.30  E-value=0.00021  Score=55.05  Aligned_cols=33  Identities=12%  Similarity=0.065  Sum_probs=29.6

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS   50 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~   50 (149)
                      .++++|+|||.+ |+++++.+++.|++.++++.|
T Consensus       189 ~~~~v~vcGp~~~~~~v~~~l~~~G~~~~~i~~e  222 (224)
T cd06187         189 ADHDIYICGPPAMVDATVDALLARGAPPERIHFD  222 (224)
T ss_pred             ccCEEEEECCHHHHHHHHHHHHHcCCCHHHeecc
Confidence            468899999999 599999999999999988765

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional

Probab=97.28  E-value=0.00017  Score=60.75  Aligned_cols=38  Identities=8%  Similarity=0.034  Sum_probs=32.5

Q ss_pred             CCCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCC
Q 031979           15 APRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAM   52 (149)
Q Consensus        15 ~~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~   52 (149)
                      .+..+.++|+|||.+ |+++++.|.+.|+++++||+|..
T Consensus       354 ~~~~~~~vyiCGp~~m~~~v~~~L~~~Gv~~~~I~~E~F  392 (399)
T PRK13289        354 LPDPDADFYFCGPVPFMQFVAKQLLELGVPEERIHYEFF  392 (399)
T ss_pred             CCCCCCEEEEECCHHHHHHHHHHHHHcCCCHHHeeeecc
Confidence            333478999999999 59999999999999999988754

>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster

Probab=97.28  E-value=0.00028  Score=54.01  Aligned_cols=34  Identities=15%  Similarity=0.258  Sum_probs=30.0

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      .+.++|+|||.. |+++++.+.++|++.++++.|.
T Consensus       175 ~~~~vyicGp~~m~~~~~~~l~~~gv~~~~i~~e~  209 (211)
T cd06185         175 AGTHVYVCGPEGMMDAVRAAAAALGWPEARLHFER  209 (211)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCChhheEeee
Confidence            467999999999 5999999999999999988653

PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

Probab=97.28  E-value=0.00022  Score=55.54  Aligned_cols=33  Identities=9%  Similarity=0.105  Sum_probs=29.1

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS   50 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~   50 (149)
                      .+.++|+|||.+ |+++++.+++.|++.++++.|
T Consensus       200 ~~~~vyicGp~~m~~~~~~~l~~~G~~~~~i~~E  233 (236)
T cd06210         200 AKPDIYLCGPPGMVDAAFAAAREAGVPDEQVYLE  233 (236)
T ss_pred             CCcEEEEeCCHHHHHHHHHHHHHcCCCHHHeeec
Confidence            357899999999 599999999999999888765

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.

>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=97.27  E-value=0.00021  Score=55.55  Aligned_cols=34  Identities=15%  Similarity=0.268  Sum_probs=30.1

Q ss_pred             CCCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979           17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS   50 (149)
Q Consensus        17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~   50 (149)
                      ..+.++|+|||.+ |+++++.++++|++.++++.|
T Consensus       191 ~~~~~v~~CGp~~~~~~~~~~l~~~G~~~~~i~~e  225 (227)
T cd06213         191 LAATEAYLCGPPAMIDAAIAVLRALGIAREHIHAD  225 (227)
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCHHHEecc
Confidence            4568899999999 599999999999999988765

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=97.22  E-value=0.00023  Score=60.48  Aligned_cols=34  Identities=6%  Similarity=0.022  Sum_probs=30.4

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      .+++||+|||.+ |+++++.|.++|+++++||++.
T Consensus       368 ~~~~vylCGP~~m~~av~~~L~~~Gv~~~~I~~E~  402 (405)
T TIGR01941       368 EDCEFYMCGPPMMNAAVIKMLEDLGVERENILLDD  402 (405)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEec
Confidence            467899999999 5999999999999999998764

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=97.16  E-value=0.00029  Score=58.12  Aligned_cols=34  Identities=24%  Similarity=0.128  Sum_probs=30.4

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      .+.++|+|||.+ |+++++.|.+.|++.+++|++.
T Consensus       297 ~~~~vy~CGp~~m~~~~~~~l~~~G~~~~~i~~e~  331 (339)
T PRK07609        297 SGHQVYACGSPVMVYAARDDFVAAGLPAEEFFADA  331 (339)
T ss_pred             cCCEEEEECCHHHHHHHHHHHHHcCCCHHHeEEee
Confidence            457899999999 5999999999999999998774

>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit

Probab=97.16  E-value=0.00053  Score=59.68  Aligned_cols=46  Identities=22%  Similarity=0.472  Sum_probs=39.4

Q ss_pred             EEEcCCCCeEEE-EcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEE
Q 031979           58 KLIGPNGEENEF-DAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQM  104 (149)
Q Consensus        58 ~~~~~~G~~~~~-~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v  104 (149)
                      +| ..||+..++ +++++++||+.++++ |+ ....+|+.|.||.|.|.|
T Consensus         2 ~~-~~Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~~G~CGaCtv~~   50 (467)
T TIGR02963         2 RF-FLNGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVV   50 (467)
T ss_pred             EE-EECCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccCCCCCCceEEEE
Confidence            45 368877788 689999999999975 76 599999999999999977

Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and

>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

Probab=97.11  E-value=0.00089  Score=52.62  Aligned_cols=23  Identities=4%  Similarity=-0.041  Sum_probs=20.1

Q ss_pred             CCeEEEcCCch-HHHHHHHHHHcC
Q 031979           19 KKFSLVKSPAS-LGSTRSVSKAFG   41 (149)
Q Consensus        19 ~~~~y~CGP~~-m~~v~~~~~~~g   41 (149)
                      +..+|+|||.+ |+++++.+++.|
T Consensus       178 ~~~v~icGp~~mv~~~~~~l~~~g  201 (243)
T cd06192         178 VDRIIVAGSDIMMKAVVEALDEWL  201 (243)
T ss_pred             CCEEEEECCHHHHHHHHHHHHhhc
Confidence            46799999999 599999998876

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi

>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

Probab=97.08  E-value=0.00039  Score=53.79  Aligned_cols=32  Identities=19%  Similarity=0.326  Sum_probs=28.0

Q ss_pred             CCCCeEEEcCCch-HH-HHHHHHHHcCCCCCccc
Q 031979           17 RSKKFSLVKSPAS-LG-STRSVSKAFGLKCSSFK   48 (149)
Q Consensus        17 ~~~~~~y~CGP~~-m~-~v~~~~~~~g~~~~~f~   48 (149)
                      ..+..+|+|||.+ |+ ++++.|.+.|++.++++
T Consensus       199 ~~~~~~~icGp~~~~~~~~~~~l~~~G~~~~~i~  232 (234)
T cd06183         199 SEDTLVLVCGPPPMIEGAVKGLLKELGYKKDNVF  232 (234)
T ss_pred             CCCeEEEEECCHHHHHHHHHHHHHHcCCCHHHEE
Confidence            4567899999999 69 99999999999988764

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.

>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=97.07  E-value=0.0006  Score=53.49  Aligned_cols=32  Identities=13%  Similarity=0.273  Sum_probs=28.6

Q ss_pred             CCCeEEEcCCchH-HHHHHHHHHcCCCCCccccc
Q 031979           18 SKKFSLVKSPASL-GSTRSVSKAFGLKCSSFKAS   50 (149)
Q Consensus        18 ~~~~~y~CGP~~m-~~v~~~~~~~g~~~~~f~~~   50 (149)
                      .+..+|+|||.+| ++++++|++.|++ ++++.|
T Consensus       209 ~~~~vyvcGp~~m~~~~~~~l~~~Gv~-~~i~~e  241 (243)
T cd06216         209 ADRQVYACGPPGFLDAAEELLEAAGLA-DRLHTE  241 (243)
T ss_pred             ccCeEEEECCHHHHHHHHHHHHHCCCc-cceeec
Confidence            4579999999995 9999999999999 988865

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for

>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

Probab=96.98  E-value=0.00066  Score=52.74  Aligned_cols=35  Identities=6%  Similarity=0.021  Sum_probs=28.8

Q ss_pred             CCCCeEEEcCCch-HHHHHHHHHHcCCC-CCcccccC
Q 031979           17 RSKKFSLVKSPAS-LGSTRSVSKAFGLK-CSSFKASA   51 (149)
Q Consensus        17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~-~~~f~~~~   51 (149)
                      ..+.+||+|||.+ |+++.+.+.+.|+. .+++++|.
T Consensus       194 ~~~~~vyiCGp~~m~~~v~~~l~~~g~~~~~~i~~e~  230 (232)
T cd06190         194 LAEFEFYFAGPPPMVDAVQRMLMIEGVVPFDQIHFDR  230 (232)
T ss_pred             ccccEEEEECCHHHHHHHHHHHHHhCCCChHheeecc
Confidence            3468999999999 59999999999865 77887763

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.

>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

Probab=96.92  E-value=0.00069  Score=52.84  Aligned_cols=34  Identities=6%  Similarity=0.166  Sum_probs=29.9

Q ss_pred             CCCCeEEEcCCchH-HHHHHHHHHcCCCCCccccc
Q 031979           17 RSKKFSLVKSPASL-GSTRSVSKAFGLKCSSFKAS   50 (149)
Q Consensus        17 ~~~~~~y~CGP~~m-~~v~~~~~~~g~~~~~f~~~   50 (149)
                      ..+..||+|||+.| +++.++|++.|+++++|+.|
T Consensus       204 ~~~~~v~icGp~~mv~~v~~~l~~~G~~~~~i~~e  238 (241)
T cd06214         204 TEFDEAFLCGPEPMMDAVEAALLELGVPAERIHRE  238 (241)
T ss_pred             ccCcEEEEECCHHHHHHHHHHHHHcCCCHHHeecc
Confidence            45678999999995 99999999999999988765

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and

>PRK09800 putative hypoxanthine oxidase; Provisional

Probab=96.88  E-value=0.0019  Score=60.75  Aligned_cols=52  Identities=17%  Similarity=0.186  Sum_probs=42.7

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC-CCCC-CCCcccCCcEEEEeeCcc
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYS-CRAGACSTCAGQMVSGSV  109 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~~-C~~G~CGtC~v~v~~G~v  109 (149)
                      +|+| ..||+.++++++++++||+.|++.|+. ...+ |+.|.||.|.|.| .|..
T Consensus         2 ~i~~-~vNg~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~-dg~~   55 (956)
T PRK09800          2 IIHF-TLNGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIF-NGNI   55 (956)
T ss_pred             eEEE-EECCEEEEEecCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEE-CCeE
Confidence            3677 478988889999999999999998864 6666 7899999999965 6643

>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family

Probab=96.88  E-value=0.00087  Score=52.63  Aligned_cols=34  Identities=15%  Similarity=0.178  Sum_probs=28.6

Q ss_pred             CCCCeEEEcCCch-HHHHHHHHHH-cCCCCCccccc
Q 031979           17 RSKKFSLVKSPAS-LGSTRSVSKA-FGLKCSSFKAS   50 (149)
Q Consensus        17 ~~~~~~y~CGP~~-m~~v~~~~~~-~g~~~~~f~~~   50 (149)
                      ..+.++|+|||.+ |+++++.+.+ .|++.++||++
T Consensus       196 ~~~~~vyicGp~~mv~~v~~~l~~~~g~~~~~i~~~  231 (235)
T cd06193         196 AGDGYVWIAGEAGAVRALRRHLREERGVPRAQVYAS  231 (235)
T ss_pred             CCCeEEEEEccHHHHHHHHHHHHHccCCCHHHEEEE
Confidence            4457899999999 5999999976 59999988764

Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy

>PTZ00319 NADH-cytochrome B5 reductase; Provisional

Probab=96.61  E-value=0.0015  Score=53.49  Aligned_cols=30  Identities=17%  Similarity=0.305  Sum_probs=25.9

Q ss_pred             CCeEEEcCCch-HH-HHHHHHHHcCCCCCccc
Q 031979           19 KKFSLVKSPAS-LG-STRSVSKAFGLKCSSFK   48 (149)
Q Consensus        19 ~~~~y~CGP~~-m~-~v~~~~~~~g~~~~~f~   48 (149)
                      ++.+|+|||.+ |+ ++++.|+++|++.++|+
T Consensus       267 ~~~vyiCGp~~mv~~~~~~~L~~~G~~~~~i~  298 (300)
T PTZ00319        267 KVMALMCGPPPMLQMAVKPNLEKIGYTADNMF  298 (300)
T ss_pred             CeEEEEECCHHHHHHHHHHHHHHcCCCHHHEE
Confidence            47899999999 47 67899999999988865

>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

Probab=96.60  E-value=0.0016  Score=51.79  Aligned_cols=31  Identities=10%  Similarity=0.101  Sum_probs=26.8

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCccc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFK   48 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~   48 (149)
                      .+.+||+|||.+ |+++++.|.+.|++.+++|
T Consensus       189 ~~~~vyicGp~~mv~~~~~~L~~~Gv~~~~i~  220 (253)
T cd06221         189 DNTVAIVCGPPIMMRFVAKELLKLGVPEEQIW  220 (253)
T ss_pred             CCcEEEEECCHHHHHHHHHHHHHcCCCHHHEE
Confidence            567899999999 5999999999999866655

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.59  E-value=0.0041  Score=58.43  Aligned_cols=47  Identities=17%  Similarity=0.347  Sum_probs=36.4

Q ss_pred             CeEEEcCCch-HHHHHHHHHHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccC
Q 031979           20 KFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACS   98 (149)
Q Consensus        20 ~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CG   98 (149)
                      ..||+|||.+ |+++.+.+++.|++.           .|.+-      .                     ...|+-|.||
T Consensus       848 ~~Vy~CGP~~Mmkav~~~l~~~Gv~~-----------~vSlE------~---------------------~M~CG~G~C~  889 (944)
T PRK12779        848 AEVIAIGPPLMMRAVSDLTKPYGVKT-----------VASLN------S---------------------IMVDATGMCG  889 (944)
T ss_pred             cEEEEECCHHHHHHHHHHHHHcCCCe-----------EEeec------c---------------------cccCCCeeeC
Confidence            5799999999 699999999888861           22221      0                     1289999999


Q ss_pred             CcEEEE
Q 031979           99 TCAGQM  104 (149)
Q Consensus        99 tC~v~v  104 (149)
                      .|.+.+
T Consensus       890 ~C~v~~  895 (944)
T PRK12779        890 ACMVPV  895 (944)
T ss_pred             eeeeee
Confidence            999975

>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1

Probab=96.50  E-value=0.0043  Score=57.70  Aligned_cols=45  Identities=22%  Similarity=0.556  Sum_probs=38.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHH-cCC-CCCCCCCCcccCCcEEEEeeCcc
Q 031979           62 PNGEENEFDAPDDAYIIDSAED-TGM-ELPYSCRAGACSTCAGQMVSGSV  109 (149)
Q Consensus        62 ~~G~~~~~~v~~g~tLLea~~~-~Gi-~i~~~C~~G~CGtC~v~v~~G~v  109 (149)
                      .||  +.++++++++||+.|++ .|+ .+..+|+.|.||.|.|.| +|+.
T Consensus         5 ~ng--~~~~~~~~~~l~~~lr~~~~~~~~k~gc~~g~cgactv~~-dg~~   51 (848)
T TIGR03311         5 VNG--REVDVNEEKKLLEFLREDLRLTGVKNGCGEGACGACTVIV-NGKA   51 (848)
T ss_pred             ECC--EEeeCCCCCcHHHHHHHhcCCCcCCCCCCCCCCCCcEEEE-CCeE
Confidence            578  68899999999999997 486 699999999999999965 6643

Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.

>PLN00192 aldehyde oxidase

Probab=96.50  E-value=0.0048  Score=59.94  Aligned_cols=48  Identities=17%  Similarity=0.425  Sum_probs=41.0

Q ss_pred             EEEEEcCCCCeEEE-EcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEE
Q 031979           56 KVKLIGPNGEENEF-DAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQM  104 (149)
Q Consensus        56 ~V~~~~~~G~~~~~-~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v  104 (149)
                      .|+|. .||+..++ ++++++|||+.|+++ |+ ....+|+.|.||.|-|.|
T Consensus         5 ~i~~~-vNg~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~~G~CGaCtV~v   55 (1344)
T PLN00192          5 SLVFA-VNGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLL   55 (1344)
T ss_pred             eEEEE-ECCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCCCCcCCCcEEEE
Confidence            47774 78977777 588999999999975 76 599999999999999987

>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]

Probab=96.43  E-value=0.0039  Score=54.84  Aligned_cols=50  Identities=16%  Similarity=0.444  Sum_probs=42.5

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEee
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVS  106 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~  106 (149)
                      +-.|.+. .+|  +.+.|++|.|+|+|++..|++||--|.      .|.|..|.|.|..
T Consensus        30 ~~~ievf-vd~--~~v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclvevek   85 (708)
T KOG2282|consen   30 PNKIEVF-VDD--QSVMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEK   85 (708)
T ss_pred             ccceEEE-ECC--eeEeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEecc
Confidence            3456664 578  889999999999999999999999998      5889999888754

>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit

Probab=96.27  E-value=0.0065  Score=57.17  Aligned_cols=47  Identities=15%  Similarity=0.127  Sum_probs=39.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHcCCC-CCC-CCCCcccCCcEEEEeeCcc
Q 031979           62 PNGEENEFDAPDDAYIIDSAEDTGME-LPY-SCRAGACSTCAGQMVSGSV  109 (149)
Q Consensus        62 ~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~-~C~~G~CGtC~v~v~~G~v  109 (149)
                      .||+.++++++++++||+.|++.|+. +.. +|+.|.||.|.|.| .|..
T Consensus         3 ~Ng~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c~~g~CGaCtv~~-dg~~   51 (951)
T TIGR03313         3 LNGAPQTLECKLGENVQTLLFNMGMHSVRNSDDGFGFAGSDAILF-NGVL   51 (951)
T ss_pred             ECCEEEEEecCCCCCHHHHHHHCCCCCCcCCCCCcccCCCCEEEE-CCeE
Confidence            47877889999999999999998874 777 69999999999965 6753

Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.20  E-value=0.011  Score=54.13  Aligned_cols=24  Identities=17%  Similarity=0.271  Sum_probs=21.1

Q ss_pred             CeEEEcCCch-HHHHHHHHHHcCCC
Q 031979           20 KFSLVKSPAS-LGSTRSVSKAFGLK   43 (149)
Q Consensus        20 ~~~y~CGP~~-m~~v~~~~~~~g~~   43 (149)
                      ..+|+|||.+ |+++.+++.+.|++
T Consensus       182 ~~vy~CGP~~M~~~v~~~l~~~gv~  206 (752)
T PRK12778        182 DKVFAIGPAIMMKFVCLLTKKYGIP  206 (752)
T ss_pred             CEEEEECCHHHHHHHHHHHHHcCCC
Confidence            5799999999 59999999888875

>TIGR02969 mam_aldehyde_ox aldehyde oxidase

Probab=96.13  E-value=0.0071  Score=58.71  Aligned_cols=49  Identities=16%  Similarity=0.440  Sum_probs=39.7

Q ss_pred             EEEEEcCCCCeE-EEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEe
Q 031979           56 KVKLIGPNGEEN-EFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMV  105 (149)
Q Consensus        56 ~V~~~~~~G~~~-~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~  105 (149)
                      .|+|. .||+.. ..++++++|||+.|++. |+ ....+|+.|.||.|-|.|-
T Consensus         2 ~~~~~-~Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~~G~CGaCtV~~~   53 (1330)
T TIGR02969         2 ELLFY-VNGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMIS   53 (1330)
T ss_pred             cEEEE-ECCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcCCCCCCCcEEEEC
Confidence            46673 688553 34789999999999974 76 5999999999999999763

Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=95.93  E-value=0.0091  Score=56.48  Aligned_cols=24  Identities=17%  Similarity=0.468  Sum_probs=20.8

Q ss_pred             CeEEEcCCch-HHHHHHHHHHcCCC
Q 031979           20 KFSLVKSPAS-LGSTRSVSKAFGLK   43 (149)
Q Consensus        20 ~~~y~CGP~~-m~~v~~~~~~~g~~   43 (149)
                      ..+|+|||.+ |+++.++++..|++
T Consensus       182 d~vy~CGP~~Mm~av~~~~~~~gi~  206 (1006)
T PRK12775        182 DLVVAIGPLPMMNACVETTRPFGVK  206 (1006)
T ss_pred             CEEEEECCHHHHHHHHHHHHHCCCc
Confidence            4799999999 69999999887775

>PRK05802 hypothetical protein; Provisional

Probab=95.90  E-value=0.013  Score=48.49  Aligned_cols=20  Identities=0%  Similarity=-0.247  Sum_probs=17.6

Q ss_pred             CeEEEcCCch-HHHHHHHHHH
Q 031979           20 KFSLVKSPAS-LGSTRSVSKA   39 (149)
Q Consensus        20 ~~~y~CGP~~-m~~v~~~~~~   39 (149)
                      ..||+|||.. |+++.+.+.+
T Consensus       255 ~~vy~CGP~~M~k~v~~~l~~  275 (320)
T PRK05802        255 NLIHCGGSDILHYKIIEYLDK  275 (320)
T ss_pred             CEEEEECCHHHHHHHHHHHhh
Confidence            5699999999 5999998876

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=95.81  E-value=0.0067  Score=58.12  Aligned_cols=33  Identities=9%  Similarity=0.136  Sum_probs=28.9

Q ss_pred             CCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccc
Q 031979           17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKA   49 (149)
Q Consensus        17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~   49 (149)
                      ..+.++|+|||.+ |+++++.|+++|++.++||.
T Consensus      1127 ~~~~~vyiCGP~~mv~~v~~~L~~~G~~~~~I~~ 1160 (1167)
T PTZ00306       1127 SKDLLVAICGPPVMQRAVKADLLALGYNMELVRT 1160 (1167)
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHHcCCCHHHeEE
Confidence            3567899999999 59999999999999988864

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed

Probab=95.36  E-value=0.017  Score=46.75  Aligned_cols=25  Identities=16%  Similarity=0.317  Sum_probs=21.6

Q ss_pred             CCeEEEcCCch-HHHHHHHHHHcCCC
Q 031979           19 KKFSLVKSPAS-LGSTRSVSKAFGLK   43 (149)
Q Consensus        19 ~~~~y~CGP~~-m~~v~~~~~~~g~~   43 (149)
                      ...||+|||.+ |+++.+.+.+.|++
T Consensus       181 ~~~vy~CGP~~M~~~v~~~l~~~gv~  206 (281)
T PRK06222        181 VDRVVAIGPVIMMKFVAELTKPYGIK  206 (281)
T ss_pred             CcEEEEECCHHHHHHHHHHHHhcCCC
Confidence            45799999999 59999999888875

>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]

Probab=95.19  E-value=0.015  Score=49.58  Aligned_cols=32  Identities=16%  Similarity=0.176  Sum_probs=27.9

Q ss_pred             CeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           20 KFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        20 ~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      +.||+|||.+ |++++..++..++|-.+||.|.
T Consensus       402 ~sv~fCGP~~m~dsL~r~l~~~~~~i~~~h~E~  434 (438)
T COG4097         402 RSVFFCGPIKMMDSLRRDLKKQNVPITNFHYEH  434 (438)
T ss_pred             ceEEEEcCHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence            4799999999 6999999999999987777653

>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]

Probab=94.77  E-value=0.029  Score=46.15  Aligned_cols=47  Identities=9%  Similarity=0.046  Sum_probs=39.4

Q ss_pred             ecccccccccCCCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979            5 RLPTSCLFQAAPRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      |+-..-+|........++|.|||.. |+++++.|.++|+.++.++.|.
T Consensus       332 ~iI~~~~L~~~~~s~~DiY~~G~~~~M~~~~~~L~~L~~~~~~v~~E~  379 (385)
T KOG3378|consen  332 RIINEEDLEKLDLSECDIYMLGPNNYMRFVKQELVKLGVEPNKVQSEF  379 (385)
T ss_pred             hhcCHHHhhhcChhhCceeeeCcHHHHHHHHHHHHHhcCCccceeccc
Confidence            4444557788888999999999999 9999999999999888776553

>PLN02252 nitrate reductase [NADPH]

Probab=94.42  E-value=0.032  Score=52.28  Aligned_cols=31  Identities=13%  Similarity=0.269  Sum_probs=25.8

Q ss_pred             CCCeEEEcCCchH-H-HHHHHHHHcCCCCCccc
Q 031979           18 SKKFSLVKSPASL-G-STRSVSKAFGLKCSSFK   48 (149)
Q Consensus        18 ~~~~~y~CGP~~m-~-~v~~~~~~~g~~~~~f~   48 (149)
                      .+..+|+|||.+| + +++..|+++|++.++++
T Consensus       854 ~~~~vyiCGPp~Mi~~av~~~L~~~G~~~~~I~  886 (888)
T PLN02252        854 DETLALMCGPPPMIEFACQPNLEKMGYDKDSIL  886 (888)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHHcCCCHHHEE
Confidence            4567999999995 6 58889999999988754

>PRK10926 ferredoxin-NADP reductase; Provisional

Probab=94.31  E-value=0.052  Score=42.98  Aligned_cols=29  Identities=7%  Similarity=0.111  Sum_probs=22.3

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHH-cCCCCCcc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKA-FGLKCSSF   47 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~-~g~~~~~f   47 (149)
                      .+..+|+|||.+ |+++++.|.+ .|+ .++.
T Consensus       205 ~~~~vy~CGp~~Mv~~~~~~l~~~~~~-~~~~  235 (248)
T PRK10926        205 ETSHVMLCGNPQMVRDTQQLLKETRQM-TKHL  235 (248)
T ss_pred             cCCEEEEECCHHHHHHHHHHHHHhcCc-cccc
Confidence            457899999999 5999999865 556 3443

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=94.10  E-value=0.049  Score=45.16  Aligned_cols=35  Identities=11%  Similarity=0.104  Sum_probs=29.5

Q ss_pred             cCCCCCCeEEEcCCchH-HHHHHHHHHcCCCCCccc
Q 031979           14 AAPRSKKFSLVKSPASL-GSTRSVSKAFGLKCSSFK   48 (149)
Q Consensus        14 ~~~~~~~~~y~CGP~~m-~~v~~~~~~~g~~~~~f~   48 (149)
                      -..+.+..+|+|||+-| .+|.++|.+.|+-.+++-
T Consensus       369 h~aPEDceyYmCGPp~mNasvikmL~dlGVE~enIl  404 (410)
T COG2871         369 HEAPEDCEYYMCGPPLMNASVIKMLKDLGVERENIL  404 (410)
T ss_pred             CCCchheeEEeeCcchhhHHHHHHHHhcCcccccee
Confidence            34566789999999998 789999999999888764

>PLN03115 ferredoxin--NADP(+) reductase; Provisional

Probab=94.05  E-value=0.042  Score=46.57  Aligned_cols=24  Identities=0%  Similarity=0.140  Sum_probs=18.3

Q ss_pred             CCCCeEEEcCCchH-HHHHHHHHHc
Q 031979           17 RSKKFSLVKSPASL-GSTRSVSKAF   40 (149)
Q Consensus        17 ~~~~~~y~CGP~~m-~~v~~~~~~~   40 (149)
                      ..+.++|+|||.+| +.|.+++.+.
T Consensus       317 ~~~~~vYiCGp~~M~~~V~~~l~~l  341 (367)
T PLN03115        317 KDNTYVYMCGLKGMEKGIDDIMVSL  341 (367)
T ss_pred             cCCeEEEEeCCHHHHHHHHHHHHHH
Confidence            45689999999985 7777776543

>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]

Probab=94.00  E-value=0.057  Score=44.36  Aligned_cols=28  Identities=11%  Similarity=0.307  Sum_probs=23.3

Q ss_pred             CCeEEEcCCchH-H-HHHHHHHHcCCCCCc
Q 031979           19 KKFSLVKSPASL-G-STRSVSKAFGLKCSS   46 (149)
Q Consensus        19 ~~~~y~CGP~~m-~-~v~~~~~~~g~~~~~   46 (149)
                      ...+++|||++| + ++...++.+||+.++
T Consensus       253 ~~~~liCGPp~m~~~~~~~~le~Lg~~~~~  282 (286)
T KOG0534|consen  253 ETLVLICGPPPMINGAAQGNLEKLGYNEDQ  282 (286)
T ss_pred             CeEEEEECCHHHHhHHHHHHHHhcCCChHh
Confidence            688999999996 5 577788889998765

>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)

Probab=93.82  E-value=0.035  Score=46.90  Aligned_cols=28  Identities=14%  Similarity=0.005  Sum_probs=22.8

Q ss_pred             CCCeEEEcCCchH-HHHHHHHHHcCCCCC
Q 031979           18 SKKFSLVKSPASL-GSTRSVSKAFGLKCS   45 (149)
Q Consensus        18 ~~~~~y~CGP~~m-~~v~~~~~~~g~~~~   45 (149)
                      .+.++|+|||.+| ++|++.+.+.+....
T Consensus       327 ~~~~vyiCGp~~M~~~v~~~L~~i~~~~~  355 (384)
T cd06206         327 QGARVYVCGDGRMAPGVREVLKRIYAEKD  355 (384)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHHHHhC
Confidence            5688999999995 999999988766543

NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la

>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

Probab=93.70  E-value=0.049  Score=44.02  Aligned_cols=23  Identities=0%  Similarity=-0.081  Sum_probs=19.2

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAF   40 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~   40 (149)
                      .+..+|+|||.+ |+++++.|.+.
T Consensus       238 ~~~~vYiCGp~~m~~~v~~~L~~~  261 (286)
T cd06208         238 DNTHVYICGLKGMEPGVDDALTSV  261 (286)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHH
Confidence            456899999999 59999988763

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then

>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=93.43  E-value=0.074  Score=42.77  Aligned_cols=23  Identities=9%  Similarity=-0.003  Sum_probs=19.6

Q ss_pred             CCCeEEEcCCch-H-HHHHHHHHHc
Q 031979           18 SKKFSLVKSPAS-L-GSTRSVSKAF   40 (149)
Q Consensus        18 ~~~~~y~CGP~~-m-~~v~~~~~~~   40 (149)
                      .+..||+|||.+ | +++.++|.+.
T Consensus       213 ~~~~vyvCGp~~~m~~~v~~~L~~~  237 (267)
T cd06182         213 EGAHIYVCGDAKSMAKDVEDALVKI  237 (267)
T ss_pred             cCCEEEEECCcccchHHHHHHHHHH
Confidence            345899999999 7 8999998877

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=93.42  E-value=0.27  Score=46.53  Aligned_cols=73  Identities=10%  Similarity=0.057  Sum_probs=53.5

Q ss_pred             eEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCC-----C------CCCCcccCCcEEEEeeCcccCCCCCCCChhhcc
Q 031979           55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELP-----Y------SCRAGACSTCAGQMVSGSVDQSDGSFLDDKQME  123 (149)
Q Consensus        55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~-----~------~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~  123 (149)
                      -.|+|. .||  +.+++.+|+||..||..+|+.+-     +      -|..|.|-.|.|.|-.|...             
T Consensus        11 ~~~~~~-~dg--~~~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~~-------------   74 (985)
T TIGR01372        11 RPLRFT-FDG--KSYSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGAQR-------------   74 (985)
T ss_pred             CeEEEE-ECC--EEeecCCCCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCcCC-------------
Confidence            356773 689  89999999999999999997632     1      36677789999998443110             


Q ss_pred             CCeEEeeeeEEcCCeEEEec
Q 031979          124 KGFVLTCVAYPTSDCVIYTH  143 (149)
Q Consensus       124 ~g~~LaCq~~~~~d~~I~~~  143 (149)
                      ...+.+|+......|.|+..
T Consensus        75 ~~~~~ac~~~~~~gm~~~~~   94 (985)
T TIGR01372        75 EPNTRATTQELYDGLVATSQ   94 (985)
T ss_pred             CCCccceeEEcccCCEEecc
Confidence            01255888888888888764

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E

Probab=93.24  E-value=0.086  Score=41.68  Aligned_cols=21  Identities=10%  Similarity=-0.010  Sum_probs=17.6

Q ss_pred             CCeEEEcCCc-hH-HHHHHHHHH
Q 031979           19 KKFSLVKSPA-SL-GSTRSVSKA   39 (149)
Q Consensus        19 ~~~~y~CGP~-~m-~~v~~~~~~   39 (149)
                      +.++|+|||. +| +++++.+.+
T Consensus       202 ~~~vy~CGp~~~m~~~v~~~l~~  224 (245)
T cd06200         202 GAAIYVCGSLQGMAPGVDAVLDE  224 (245)
T ss_pred             CcEEEEECCchhhhHHHHHHHHH
Confidence            5789999999 85 999888764

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD

>PLN03116 ferredoxin--NADP+ reductase; Provisional

Probab=93.19  E-value=0.084  Score=43.26  Aligned_cols=22  Identities=5%  Similarity=-0.052  Sum_probs=16.9

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHH
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKA   39 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~   39 (149)
                      .+.++|+|||.+ |+++++.+.+
T Consensus       258 ~~~~vYiCGp~~mv~~v~~~L~~  280 (307)
T PLN03116        258 NGAHIYFCGLKGMMPGIQDTLKR  280 (307)
T ss_pred             CCcEEEEeCCHHHHHHHHHHHHH
Confidence            468899999998 5777666644

>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E

Probab=92.50  E-value=0.12  Score=41.93  Aligned_cols=22  Identities=9%  Similarity=0.010  Sum_probs=18.1

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHH
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKA   39 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~   39 (149)
                      .+..+|+|||.+ |+++.+.|.+
T Consensus       244 ~~~~vyiCGp~~M~~~v~~~L~~  266 (289)
T cd06201         244 DGAQIMVCGSRAMAQGVAAVLEE  266 (289)
T ss_pred             CCcEEEEECCHHHHHHHHHHHHH
Confidence            467899999998 4888887765

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F

>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]

Probab=92.49  E-value=0.14  Score=40.70  Aligned_cols=31  Identities=29%  Similarity=0.695  Sum_probs=24.8

Q ss_pred             CchHHHHHHHc--CCC----CCCCCCCcccCCcEEEE
Q 031979           74 DAYIIDSAEDT--GME----LPYSCRAGACSTCAGQM  104 (149)
Q Consensus        74 g~tLLea~~~~--Gi~----i~~~C~~G~CGtC~v~v  104 (149)
                      |--+|||+.+-  .++    ..-+||.|+||+|...+
T Consensus        76 GpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI  112 (288)
T KOG3049|consen   76 GPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI  112 (288)
T ss_pred             chHHHHHHHHhhcccCCceehhhhhhccccccceecc
Confidence            67899999763  333    56799999999999875

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein

Probab=92.28  E-value=0.13  Score=44.03  Aligned_cols=24  Identities=0%  Similarity=0.023  Sum_probs=18.9

Q ss_pred             CCCeEEEcCCchH-HHHHHHHHHcC
Q 031979           18 SKKFSLVKSPASL-GSTRSVSKAFG   41 (149)
Q Consensus        18 ~~~~~y~CGP~~m-~~v~~~~~~~g   41 (149)
                      .+.+||+|||.+| +++.+.|.+.+
T Consensus       362 ~~~~vYiCGp~~M~~~v~~~L~~~~  386 (411)
T TIGR03224       362 PNTYIYICGLKGMEEGVLDAFRDVC  386 (411)
T ss_pred             CCcEEEEECCHHHHHHHHHHHHHHH
Confidence            3578999999986 88888776653

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.

>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain

Probab=92.05  E-value=0.14  Score=43.77  Aligned_cols=23  Identities=9%  Similarity=0.065  Sum_probs=18.1

Q ss_pred             CCCCeEEEcCCchH-HHHHHHHHH
Q 031979           17 RSKKFSLVKSPASL-GSTRSVSKA   39 (149)
Q Consensus        17 ~~~~~~y~CGP~~m-~~v~~~~~~   39 (149)
                      ..+.++|+|||..| ++|++.+.+
T Consensus       348 ~~~~~iYvCG~~~M~~~V~~~L~~  371 (406)
T cd06202         348 REGGHIYVCGDVTMAEDVSQTIQR  371 (406)
T ss_pred             hCCCEEEEeCCCchHHHHHHHHHH
Confidence            35788999999985 888877754

The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.

>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]

Probab=91.57  E-value=0.46  Score=40.81  Aligned_cols=50  Identities=22%  Similarity=0.483  Sum_probs=38.4

Q ss_pred             eeEEEEEcCCCCeEE-EEcCCCchHHHHHH-HcCC-CCCCCCCCcccCCcEEEE
Q 031979           54 VYKVKLIGPNGEENE-FDAPDDAYIIDSAE-DTGM-ELPYSCRAGACSTCAGQM  104 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~-~~v~~g~tLLea~~-~~Gi-~i~~~C~~G~CGtC~v~v  104 (149)
                      +.+|.|+ .||..+. -.+++..|||+.++ ..++ .-.-+|..|-||.|.|-|
T Consensus         6 ~~~irf~-lN~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCAEGDCGACTVlV   58 (493)
T COG4630           6 RNTIRFL-LNGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLV   58 (493)
T ss_pred             cceeEEE-ecCceEEeecCCcchHHHHHHHHhcccccccccccCCCcCceEEEE
Confidence            3567775 5675444 34688999999998 5666 478899999999999865

>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

Probab=91.29  E-value=0.15  Score=38.74  Aligned_cols=28  Identities=21%  Similarity=0.268  Sum_probs=21.0

Q ss_pred             EEEcCCchH-HHHHHHHHHcCCCCCcccc
Q 031979           22 SLVKSPASL-GSTRSVSKAFGLKCSSFKA   49 (149)
Q Consensus        22 ~y~CGP~~m-~~v~~~~~~~g~~~~~f~~   49 (149)
                      ||+|||.+| ++++..+.+.+....+||.
T Consensus       179 v~~CGp~~~~~~~~~~~~~~~~~~~~~~~  207 (210)
T cd06186         179 VVVCGPPGLVDDVRNAVAKKGGTGVEFHE  207 (210)
T ss_pred             EEEECchhhccHHHHHHhhcCCCceEEEe
Confidence            799999996 8999988775555444554

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.

>cd06199 SiR Cytochrome p450- like alpha subunits of E

Probab=91.03  E-value=0.19  Score=42.19  Aligned_cols=22  Identities=9%  Similarity=-0.044  Sum_probs=17.9

Q ss_pred             CCCeEEEcCCc-hH-HHHHHHHHH
Q 031979           18 SKKFSLVKSPA-SL-GSTRSVSKA   39 (149)
Q Consensus        18 ~~~~~y~CGP~-~m-~~v~~~~~~   39 (149)
                      .+.++|+|||+ .| ++|++++.+
T Consensus       306 ~~~~vYvCG~~~~M~~~V~~~L~~  329 (360)
T cd06199         306 EGAHFYVCGDAKRMAKDVDAALLD  329 (360)
T ss_pred             CCCEEEEECCCccccHHHHHHHHH
Confidence            46889999999 57 888887754

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.

>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=90.77  E-value=0.2  Score=42.87  Aligned_cols=23  Identities=9%  Similarity=0.066  Sum_probs=18.6

Q ss_pred             CCCeEEEcCCch-H-HHHHHHHHHc
Q 031979           18 SKKFSLVKSPAS-L-GSTRSVSKAF   40 (149)
Q Consensus        18 ~~~~~y~CGP~~-m-~~v~~~~~~~   40 (149)
                      .+.+||+|||.. | ++|++.|.+.
T Consensus       362 ~~~~vYvCGp~~~M~~~V~~~L~~i  386 (416)
T cd06204         362 EGAYIYVCGDAKNMARDVEKTLLEI  386 (416)
T ss_pred             cCCEEEEECCcccchHHHHHHHHHH
Confidence            458899999997 8 8888887653

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo

>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=90.60  E-value=0.16  Score=42.93  Aligned_cols=24  Identities=8%  Similarity=-0.060  Sum_probs=20.3

Q ss_pred             CeEEEcCCch-H-HHHHHHHHHcCCC
Q 031979           20 KFSLVKSPAS-L-GSTRSVSKAFGLK   43 (149)
Q Consensus        20 ~~~y~CGP~~-m-~~v~~~~~~~g~~   43 (149)
                      ..||+|||.. | ++|++.+.+.+..
T Consensus       330 ~~vYvCG~~~~M~~~V~~~L~~~~~~  355 (382)
T cd06207         330 GVIYVCGSTWKMPPDVQEAFEEILKK  355 (382)
T ss_pred             CEEEEECCcccccHHHHHHHHHHHHH
Confidence            4899999998 8 8999999877554

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe

>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=90.29  E-value=0.32  Score=38.79  Aligned_cols=29  Identities=17%  Similarity=0.282  Sum_probs=24.8

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSS   46 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~   46 (149)
                      ....+|+|||.. |+++.+.+.+.|++...
T Consensus       191 ~~~~v~~cGp~~M~~~v~~~~~~~g~~~~~  220 (252)
T COG0543         191 EVDDVYICGPPAMVKAVREKLKEYGVPISA  220 (252)
T ss_pred             cCCEEEEECCHHHHHHHHHHHHhcCCchhh
Confidence            568999999999 59999999999987543

>PRK06214 sulfite reductase; Provisional

Probab=89.93  E-value=0.3  Score=43.41  Aligned_cols=22  Identities=9%  Similarity=-0.043  Sum_probs=17.9

Q ss_pred             CCCeEEEcCCch-H-HHHHHHHHH
Q 031979           18 SKKFSLVKSPAS-L-GSTRSVSKA   39 (149)
Q Consensus        18 ~~~~~y~CGP~~-m-~~v~~~~~~   39 (149)
                      .+.+||+|||.. | ++|++.|.+
T Consensus       476 ~~a~iYVCGp~~~M~~~V~~~L~~  499 (530)
T PRK06214        476 EGAHFYVCGDAKRMAKDVERALVD  499 (530)
T ss_pred             CCcEEEEeCChHHHHHHHHHHHHH
Confidence            468999999987 8 888887754

>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate

Probab=89.86  E-value=0.3  Score=41.53  Aligned_cols=22  Identities=18%  Similarity=0.046  Sum_probs=17.6

Q ss_pred             CCCeEEEcCCch-H-HHHHHHHHH
Q 031979           18 SKKFSLVKSPAS-L-GSTRSVSKA   39 (149)
Q Consensus        18 ~~~~~y~CGP~~-m-~~v~~~~~~   39 (149)
                      .+..+|+|||+. | ++|++++.+
T Consensus       344 ~~~~iYvCG~~~~M~~~V~~~l~~  367 (398)
T cd06203         344 SNAKIYVCGDAKGMAKDVRDTFVD  367 (398)
T ss_pred             CCcEEEEECCcchhhHHHHHHHHH
Confidence            468899999975 8 788887763

In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme

>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]

Probab=89.17  E-value=0.6  Score=44.84  Aligned_cols=44  Identities=23%  Similarity=0.423  Sum_probs=33.4

Q ss_pred             CCCCeEE-EEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEe
Q 031979           62 PNGEENE-FDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMV  105 (149)
Q Consensus        62 ~~G~~~~-~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~  105 (149)
                      .+|+..+ -.++++.||+..++.+ ++ ....+|+.|.||.|.|-+-
T Consensus         7 VNG~~~~~~~vdP~~TL~~fLR~k~~ltgtKlgC~EGGCGaCtv~ls   53 (1257)
T KOG0430|consen    7 INGKRVEVELLPPDLTLNTFLREKLGLTGTKLGCGEGGCGACTVVLS   53 (1257)
T ss_pred             ECCEEeeEecCCcchhHHHHHHHhcCCcceeeccCCCCccceEEEEe
Confidence            5663222 2367899999999875 55 4899999999999999653

>PLN02906 xanthine dehydrogenase

Probab=88.33  E-value=0.5  Score=46.27  Aligned_cols=32  Identities=19%  Similarity=0.552  Sum_probs=28.1

Q ss_pred             CchHHHHHHHcCC-CCCCCCCCcccCCcEEEEe
Q 031979           74 DAYIIDSAEDTGM-ELPYSCRAGACSTCAGQMV  105 (149)
Q Consensus        74 g~tLLea~~~~Gi-~i~~~C~~G~CGtC~v~v~  105 (149)
                      ++|||+.|++.|+ ....+|+.|.||.|.|.|-
T Consensus         1 ~~~ll~~LR~~~l~g~k~gC~~g~CGaCtv~~~   33 (1319)
T PLN02906          1 HQTLLEYLRDLGLTGTKLGCGEGGCGACTVMVS   33 (1319)
T ss_pred             CCcHHHHHHhCCCCCCCCCcCCCCCCCeEEEEC
Confidence            4689999999776 5999999999999999774

>PRK10953 cysJ sulfite reductase subunit alpha; Provisional

Probab=87.34  E-value=0.49  Score=42.62  Aligned_cols=22  Identities=9%  Similarity=-0.007  Sum_probs=17.3

Q ss_pred             CCCeEEEcCCch-H-HHHHHHHHH
Q 031979           18 SKKFSLVKSPAS-L-GSTRSVSKA   39 (149)
Q Consensus        18 ~~~~~y~CGP~~-m-~~v~~~~~~   39 (149)
                      .++++|+|||.. | ++|++++.+
T Consensus       546 ~ga~~YVCG~~~~M~~~V~~~L~~  569 (600)
T PRK10953        546 DGAHIYVCGDANRMAKDVEQALLE  569 (600)
T ss_pred             CCcEEEEECCCccchHHHHHHHHH
Confidence            578999999986 8 777776643

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=87.17  E-value=1.1  Score=29.28  Aligned_cols=24  Identities=17%  Similarity=0.178  Sum_probs=20.7

Q ss_pred             EcCCCCeEEEEcCCCchHHHHHHH
Q 031979           60 IGPNGEENEFDAPDDAYIIDSAED   83 (149)
Q Consensus        60 ~~~~G~~~~~~v~~g~tLLea~~~   83 (149)
                      ..+||+...+.+.+|+||.|++++
T Consensus         5 ~LPng~~t~V~vrpg~ti~d~L~~   28 (72)
T cd01760           5 YLPNGQRTVVPVRPGMSVRDVLAK   28 (72)
T ss_pred             ECcCCCeEEEEECCCCCHHHHHHH
Confidence            348998889999999999998865

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component

Probab=84.96  E-value=0.75  Score=41.32  Aligned_cols=23  Identities=4%  Similarity=-0.035  Sum_probs=18.1

Q ss_pred             CCCeEEEcC-CchH-HHHHHHHHHc
Q 031979           18 SKKFSLVKS-PASL-GSTRSVSKAF   40 (149)
Q Consensus        18 ~~~~~y~CG-P~~m-~~v~~~~~~~   40 (149)
                      .+.++|+|| |..| ++|+++|.+.
T Consensus       543 ~~a~vYvCG~~~~M~~~V~~~L~~i  567 (597)
T TIGR01931       543 EGAHIYVCGDAKKMAKDVHQALLDI  567 (597)
T ss_pred             CCcEEEEECCCccccHHHHHHHHHH
Confidence            468999999 6667 8888887654

This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.

>PTZ00274 cytochrome b5 reductase; Provisional

Probab=84.92  E-value=0.57  Score=38.98  Aligned_cols=15  Identities=27%  Similarity=0.434  Sum_probs=12.6

Q ss_pred             CCeEEEcCCch-HHHH
Q 031979           19 KKFSLVKSPAS-LGST   33 (149)
Q Consensus        19 ~~~~y~CGP~~-m~~v   33 (149)
                      +.++|+|||.+ |+++
T Consensus       263 ~~~vylCGPp~Mm~av  278 (325)
T PTZ00274        263 KKIIMLCGPDQLLNHV  278 (325)
T ss_pred             CcEEEEeCCHHHHHHh
Confidence            36799999999 5877

>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []

Probab=82.95  E-value=0.76  Score=26.67  Aligned_cols=17  Identities=35%  Similarity=0.913  Sum_probs=13.8

Q ss_pred             CCCCcccCCcEEEEeeC
Q 031979           91 SCRAGACSTCAGQMVSG  107 (149)
Q Consensus        91 ~C~~G~CGtC~v~v~~G  107 (149)
                      .|+.|.|+.|.+....+
T Consensus         5 ~CG~G~C~~C~v~~~~~   21 (40)
T PF10418_consen    5 ACGVGACGGCVVPVKDG   21 (40)
T ss_dssp             SSSSSSS-TTEEECSST
T ss_pred             cCCCcEeCCcEeeeecC
Confidence            69999999999987654

The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.

>smart00455 RBD Raf-like Ras-binding domain

Probab=81.98  E-value=2.7  Score=27.15  Aligned_cols=23  Identities=9%  Similarity=0.136  Sum_probs=20.1

Q ss_pred             cCCCCeEEEEcCCCchHHHHHHH
Q 031979           61 GPNGEENEFDAPDDAYIIDSAED   83 (149)
Q Consensus        61 ~~~G~~~~~~v~~g~tLLea~~~   83 (149)
                      .++|+...+.+.+|+||.|+++.
T Consensus         6 LP~~~~~~V~vrpg~tl~e~L~~   28 (70)
T smart00455        6 LPDNQRTVVKVRPGKTVRDALAK   28 (70)
T ss_pred             CCCCCEEEEEECCCCCHHHHHHH
Confidence            48998889999999999998865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
3p63_A	96	Structure Of M. Laminosus Ferredoxin With A Shorter		1e-36
1off_A	97	2fe-2s Ferredoxin From Synechocystis Sp. Pcc 6803 L		3e-35
1rfk_A	98	Crystal Structure Of 2fe2s Ferredoxin From Thermoph		3e-35
2pvg_C	96	Crystal Srtucture Of The Binary Complex Between Fer		5e-35
1roe_A	97	Nmr Study Of 2fe-2s Ferredoxin Of Synechococcus Elo		2e-34
1fxa_A	98	Crystallization And Structure Determination To 2.5-		7e-34
1j7c_A	98	Structure Of The Anabaena Ferredoxin Mutant E95k Le		7e-34
1dox_A	96	1h And 15n Sequential Assignment, Secondary Structu		8e-34
1qog_A	98	Ferredoxin Mutation S47a Length = 98		1e-33
1qof_A	98	Ferredoxin Mutation Q70k Length = 98		2e-33
1j7b_A	98	Structure Of The Anabaena Ferredoxin Mutant E94k Le		2e-33
1qob_A	98	Ferredoxin Mutation D62k Length = 98		4e-33
1j7a_A	98	Structure Of The Anabaena Ferredoxin D68k Mutant Le		4e-33
1qoa_A	98	Ferredoxin Mutation C49s Length = 98		5e-33
1pfd_A	96	The Solution Structure Of High Plant Parsley [2fe-2		9e-33
1gaq_B	98	Crystal Structure Of The Complex Between Ferredoxin		9e-33
1awd_A	94	Ferredoxin [2fe-2s] Oxidized Form From Chlorella Fu		1e-32
4fxc_A	98	Tertiary Structure Of [2fe-2s] Ferredoxin From Spir		3e-32
3b2g_A	98	Leptolyngbya Boryana Ferredoxin Length = 98		6e-32
3av8_A	97	Refined Structure Of Plant-Type [2fe-2s] Ferredoxin		2e-31
3ab5_A	97	Crystal Structure Of The 2fe 2s Ferredoxin From Cya		4e-31
1fxi_A	96	Structure Of The [2fe-2s] Ferredoxin I From The Blu		1e-30
1a70_A	97	Spinach Ferredoxin Length = 97		2e-29
1frr_A	95	Crystal Structure Of [2fe-2s] Ferredoxin I From Equ		3e-29
1iue_A	98	Crystal Structure Analysis Of Ferredoxin From Plasm		1e-24
1wri_A	93	Crystal Structure Of Ferredoxin Isoform Ii From E.		5e-24
1frd_A	98	Molecular Structure Of The Oxidized, Recombinant, H		2e-17
1doi_A	128	2fe-2s Ferredoxin From Haloarcula Marismortui Lengt		2e-09
1e10_A	128	[2fe-2s]-Ferredoxin From Halobacterium Salinarum Le		3e-09
1e0z_A	128	[2fe-2s]-Ferredoxin From Halobacterium Salinarum Le		4e-09
1krh_A	338	X-Ray Stucture Of Benzoate Dioxygenase Reductase Le		2e-06
1jq4_A	98	[2fe-2s] Domain Of Methane Monooxygenase Reductase		2e-05
3zyy_X	631	Reductive Activator For Corrinoid,Iron-Sulfur Prote		2e-04
2pia_A	321	Phthalate Dioxygenase Reductase: A Modular Structur		2e-04

>pdb|3P63|A Chain A, Structure Of M. Laminosus Ferredoxin With A Shorter L1,2 Loop Length = 96

Iteration: 1
 Score =  148 bits (374), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 81/97 (83%), Gaps = 1/97 (1%)
Query: 53  AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
           A YKV LI P G +   + PDD YI+D+AE+ G++LPYSCRAGACSTCAG+++SG+VDQS
Sbjct: 1   ATYKVTLINPTGNKT-IEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQS 59
Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           D SFLDD Q+E G+VLTCVAYPTSDCVI THKE ELY
Sbjct: 60  DQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEELY 96

>pdb|1OFF|A Chain A, 2fe-2s Ferredoxin From Synechocystis Sp. Pcc 6803 Length = 97

Iteration: 1
 Score =  143 bits (361), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
Query: 52  MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
           MA Y VKLI P+GE +  +  DD YI+D+AE+ G++LPYSCRAGACSTCAG++ +GSVDQ
Sbjct: 1   MASYTVKLITPDGESS-IECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQ 59
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SD SFLDD Q+E G+VLTCVAYPTSDC I THKE +LY
Sbjct: 60  SDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDLY 97

>pdb|1RFK|A Chain A, Crystal Structure Of 2fe2s Ferredoxin From Thermophilic Cyanobacterium Mastigocladus Laminosus Length = 98

Iteration: 1
 Score =  143 bits (361), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 79/98 (80%), Gaps = 1/98 (1%)
Query: 53  AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
           A YKV LI    G     + PDD YI+D+AE+ G++LPYSCRAGACSTCAG+++SG+VDQ
Sbjct: 1   ATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SD SFLDD Q+E G+VLTCVAYPTSDCVI THKE ELY
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEELY 98

>pdb|2PVG|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin And Ferredoxin:thioredoxin Reductase Length = 96

Iteration: 1
 Score =  142 bits (359), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 67/97 (69%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 53  AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
           A Y VKLI P+GE +  +  DD YI+D+AE+ G+ELPYSCRAGACSTCAG++ +GSVDQS
Sbjct: 1   ASYTVKLITPDGESS-IECSDDTYILDAAEEAGLELPYSCRAGACSTCAGKITAGSVDQS 59
Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           D SFLDD Q+E G+VLTCVAYPTSDC I THKE +LY
Sbjct: 60  DQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDLY 96

>pdb|1ROE|A Chain A, Nmr Study Of 2fe-2s Ferredoxin Of Synechococcus Elongatus Length = 97

Iteration: 1
 Score =  140 bits (354), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 63/96 (65%), Positives = 77/96 (80%)
Query: 53  AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
           A YKV L+ P+G E   D P+D YI+D AE+ G++LP+SCRAGACSTCAG+++ G VDQS
Sbjct: 1   ATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQS 60
Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
           D SFLDD Q+EKGFVLTCVAYP SDC I T++E EL
Sbjct: 61  DQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 96

>pdb|1FXA|A Chain A, Crystallization And Structure Determination To 2.5-Angstroms Resolution Of The Oxidized [2fe-2s] Ferredoxin Isolated From Anabaena 7120 Length = 98

Iteration: 1
 Score =  139 bits (350), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 65/98 (66%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 53  AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
           A +KV LI    G ++E + PDD YI+D+AE+ G +LP+SCRAGACSTCAG++VSG+VDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SD SFLDD Q+E G+VLTCVAYPTSD VI THKE +LY
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 98

>pdb|1J7C|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E95k Length = 98

Iteration: 1
 Score =  139 bits (349), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 65/98 (66%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 53  AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
           A +KV LI    G ++E + PDD YI+D+AE+ G +LP+SCRAGACSTCAG++VSG+VDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SD SFLDD Q+E G+VLTCVAYPTSD VI THKE +LY
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEKDLY 98

>pdb|1DOX|A Chain A, 1h And 15n Sequential Assignment, Secondary Structure And Tertiary Fold Of [2fe-2s] Ferredoxin From Synechocystis Sp. Pcc 6803 Length = 96

Iteration: 1
 Score =  139 bits (349), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 65/96 (67%), Positives = 79/96 (82%), Gaps = 1/96 (1%)
Query: 53  AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
           A Y VKLI P+GE +  +  DD YI+D+AE+ G++LPYSCRAGACSTCAG++ +GSVDQS
Sbjct: 1   ASYTVKLITPDGESS-IECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQS 59
Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
           D SFLDD Q+E G+VLTCVAYPTSDC I THKE +L
Sbjct: 60  DQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 95

>pdb|1QOG|A Chain A, Ferredoxin Mutation S47a Length = 98

Iteration: 1
 Score =  138 bits (347), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 53  AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
           A +KV LI    G ++E + PDD YI+D+AE+ G +LP+SCRAGAC+TCAG++VSG+VDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACATCAGKLVSGTVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SD SFLDD Q+E G+VLTCVAYPTSD VI THKE +LY
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 98

>pdb|1QOF|A Chain A, Ferredoxin Mutation Q70k Length = 98

Iteration: 1
 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 53  AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
           A +KV LI    G ++E + PDD YI+D+AE+ G +LP+SCRAGACSTCAG++VSG+VDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SD SFLDD ++E G+VLTCVAYPTSD VI THKE +LY
Sbjct: 61  SDQSFLDDDKIEAGYVLTCVAYPTSDVVIQTHKEEDLY 98

>pdb|1J7B|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E94k Length = 98

Iteration: 1
 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 53  AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
           A +KV LI    G ++E + PDD YI+D+AE+ G +LP+SCRAGACSTCAG++VSG+VDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SD SFLDD Q+E G+VLTCVAYPTSD VI THK+ +LY
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKKEDLY 98

>pdb|1QOB|A Chain A, Ferredoxin Mutation D62k Length = 98

Iteration: 1
 Score =  136 bits (343), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 79/98 (80%), Gaps = 1/98 (1%)
Query: 53  AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
           A +KV LI    G ++E + PDD YI+D+AE+ G +LP+SCRAGACSTCAG++VSG+VDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           S  SFLDD Q+E G+VLTCVAYPTSD VI THKE +LY
Sbjct: 61  SKQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 98

>pdb|1J7A|A Chain A, Structure Of The Anabaena Ferredoxin D68k Mutant Length = 98

Iteration: 1
 Score =  136 bits (343), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 79/98 (80%), Gaps = 1/98 (1%)
Query: 53  AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
           A +KV LI    G ++E + PDD YI+D+AE+ G +LP+SCRAGACSTCAG++VSG+VDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SD SFLD  Q+E G+VLTCVAYPTSD VI THKE +LY
Sbjct: 61  SDQSFLDKDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 98

>pdb|1QOA|A Chain A, Ferredoxin Mutation C49s Length = 98

Iteration: 1
 Score =  136 bits (342), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 79/98 (80%), Gaps = 1/98 (1%)
Query: 53  AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
           A +KV LI    G ++E + PDD YI+D+AE+ G +LP+SCRAGACST AG++VSG+VDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTSAGKLVSGTVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SD SFLDD Q+E G+VLTCVAYPTSD VI THKE +LY
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 98

>pdb|1PFD|A Chain A, The Solution Structure Of High Plant Parsley [2fe-2s] Ferredoxin, Nmr, 18 Structures Length = 96

Iteration: 1
 Score =  135 bits (340), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 63/96 (65%), Positives = 79/96 (82%), Gaps = 1/96 (1%)
Query: 53  AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
           A Y VKLI P+GE  EF   DD Y++D AE+ G+++PYSCRAG+CS+CAG++VSGS+DQS
Sbjct: 1   ATYNVKLITPDGE-VEFKCDDDVYVLDQAEEEGIDIPYSCRAGSCSSCAGKVVSGSIDQS 59
Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
           D SFLDD+QM+ G+VLTC AYPTSD VI THKE E+
Sbjct: 60  DQSFLDDEQMDAGYVLTCHAYPTSDVVIETHKEEEI 95

>pdb|1GAQ|B Chain B, Crystal Structure Of The Complex Between Ferredoxin And Ferredoxin-Nadp+ Reductase Length = 98

Iteration: 1
 Score =  135 bits (340), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 65/96 (67%), Positives = 76/96 (79%), Gaps = 1/96 (1%)
Query: 53  AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
           A Y VKLI P GE  E   PDD YI+D AE+ G++LPYSCRAG+CS+CAG++VSGSVDQS
Sbjct: 1   ATYNVKLITPEGE-VELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQS 59
Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
           D S+LDD Q+  G+VLTC AYPTSD VI THKE EL
Sbjct: 60  DQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEEL 95

>pdb|1AWD|A Chain A, Ferredoxin [2fe-2s] Oxidized Form From Chlorella Fusca Length = 94

Iteration: 1
 Score =  135 bits (339), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 77/95 (81%), Gaps = 1/95 (1%)
Query: 55  YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG 114
           YKV L  P+GEE   + P+D YI+D+AE+ G++LPYSCRAGACS+CAG++ SG VDQSD 
Sbjct: 1   YKVTLKTPSGEET-IECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQ 59
Query: 115 SFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SFLDD QM KGFVLTCVAYPTSD  I TH+E+ LY
Sbjct: 60  SFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAALY 94

>pdb|4FXC|A Chain A, Tertiary Structure Of [2fe-2s] Ferredoxin From Spirulina Platensis Refined At 2.5 Angstroms Resolution: Structural Comparisons Of Plant-Type Ferredoxins And An Electrostatic Potential Analysis Length = 98

Iteration: 1
 Score =  133 bits (335), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
Query: 53  AVYKVKLIGPNGEENE-FDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
           A YKV LI      NE  D  DD YI+D+AE+ G++LPYSCRAGACSTCAG + SG++DQ
Sbjct: 1   ATYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SD SFLDD Q+E G+VLTCVAYPTSDC I TH+E  LY
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEEGLY 98

>pdb|3B2G|A Chain A, Leptolyngbya Boryana Ferredoxin Length = 98

Iteration: 1
 Score =  132 bits (332), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 76/96 (79%), Gaps = 1/96 (1%)
Query: 55  YKVKLIGPN-GEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSD 113
           +KV LI    G     + PDD YI+D+AE+ G++LPYSCRAGACSTCAG++ +G+VDQSD
Sbjct: 3   FKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQSD 62
Query: 114 GSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
            SFLDD Q++ G+VLTCVAYPTSDC I TH+E +LY
Sbjct: 63  QSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDLY 98

>pdb|3AV8|A Chain A, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From Aphanothece Sacrum At 1.46 A Resolution Length = 97

Iteration: 1
 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Query: 53  AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSV-DQ 111
           A YKV L  P+G+ N    PDD YI+D AE+ G++LPYSCRAGACSTCAG++VSG   DQ
Sbjct: 1   ASYKVTLKTPDGD-NVITVPDDEYILDVAEEQGLDLPYSCRAGACSTCAGKLVSGPAPDQ 59
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SD SFLDD Q++ G++LTCVAYPT DCVI THKE  LY
Sbjct: 60  SDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEALY 97

>pdb|3AB5|A Chain A, Crystal Structure Of The 2fe 2s Ferredoxin From Cyanidioschyzon Merolae Length = 97

Iteration: 1
 Score =  129 bits (325), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 76/97 (78%), Gaps = 1/97 (1%)
Query: 54  VYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
           +YK++L+    G +       D YI+D+AE+ G++LPYSCRAGACSTCAG++V GSVDQS
Sbjct: 1   MYKIQLVNQKEGIDVTIQCAGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQS 60
Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           D SFLD+ Q+ KGF+LTCVAYPTSDCVI TH+E  LY
Sbjct: 61  DQSFLDEDQISKGFILTCVAYPTSDCVIQTHQEEALY 97

>pdb|1FXI|A Chain A, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green Alga Aphanothece Sacrum At 2.2 Angstroms Resolution Length = 96

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Query: 53  AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
           A YKV L  P+G+ N    PDD YI+D AE+ G++LPYSCRAGACSTCAG++VSG     
Sbjct: 1   ASYKVTLKTPDGD-NVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDE 59
Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           D SFLDD Q++ G++LTCVAYPT DCVI THKE  LY
Sbjct: 60  DQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEALY 96

>pdb|1A70|A Chain A, Spinach Ferredoxin Length = 97

Iteration: 1
 Score =  124 bits (311), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/94 (59%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 55  YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG 114
           YKV L+ P G   EF  PDD YI+D+AE+ G++LPYSCRAG+CS+CAG++ +GS++Q D 
Sbjct: 3   YKVTLVTPTGN-VEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQ 61
Query: 115 SFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
           SFLDD Q+++G+VLTC AYP SD  I THK+ EL
Sbjct: 62  SFLDDDQIDEGWVLTCAAYPVSDVTIETHKKEEL 95

>pdb|1FRR|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin I From Equisetum Arvense At 1.8 Angstroms Resolution Length = 95

Iteration: 1
 Score =  124 bits (310), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/95 (62%), Positives = 74/95 (77%), Gaps = 1/95 (1%)
Query: 55  YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG 114
           YK  L  P+GE    D P+   I+D+AE+ G +LP+SCRAGACS+C G++VSGSVD+S+G
Sbjct: 2   YKTVLKTPSGEFT-LDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEG 60
Query: 115 SFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SFLDD QME+GFVLTC+A P SD VI THKE EL+
Sbjct: 61  SFLDDGQMEEGFVLTCIAIPESDLVIETHKEEELF 95

>pdb|1IUE|A Chain A, Crystal Structure Analysis Of Ferredoxin From Plasmodium Falciparum Length = 98

Iteration: 1
 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 53  AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
           A Y + L   +GE+ + +  +D YI+D++E   +ELPYSCR G+CSTCA ++V G VD  
Sbjct: 1   AFYNITLRTNDGEK-KIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDND 59
Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           D S+LD++Q++K ++L C  YP SDCVI THKE EL+
Sbjct: 60  DQSYLDEEQIKKKYILLCTCYPKSDCVIETHKEDELH 96

>pdb|1WRI|A Chain A, Crystal Structure Of Ferredoxin Isoform Ii From E. Arvense Length = 93

Iteration: 1
 Score =  106 bits (264), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 54/94 (57%), Positives = 69/94 (73%), Gaps = 2/94 (2%)
Query: 55  YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG 114
           YKV L  P+G+   FD      +ID   +   +LP SC+AGACSTC G++VSG+VDQS+G
Sbjct: 2   YKVTLKTPDGDIT-FDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEG 59
Query: 115 SFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
           SFLDD+Q+E+G+VLTC+A P SD VI THKE EL
Sbjct: 60  SFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93

>pdb|1FRD|A Chain A, Molecular Structure Of The Oxidized, Recombinant, Heterocyst (2fe-2s) Ferredoxin From Anabaena 7120 Determined To 1.7 Angstroms Resolution Length = 98

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Query: 53  AVYKVKLIGPNGE-ENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
           A Y+V+LI    + +   +  ++  I+D AE+ G+ELP+SC +G+CS+C G++V G VDQ
Sbjct: 1   ASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQ 60
Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
           SD  FLDD+QM KGF L CV YP S+C I TH+E  L
Sbjct: 61  SDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYL 97

>pdb|1DOI|A Chain A, 2fe-2s Ferredoxin From Haloarcula Marismortui Length = 128

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 76  YIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQME-KGFVLTCVAYP 134
           YI+++AE  G + P+SCRAGAC+ CA  ++ G +D      L D+++E K   LTC+  P
Sbjct: 47  YILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTCIGSP 106
Query: 135 TSDCV--IYTHK 144
            +D V  +Y  K
Sbjct: 107 DADEVKIVYNAK 118

>pdb|1E10|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum Length = 128

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 61  GPNGEE-NEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD 119
           G +GE+    +  +  YI+++AE  G + P+SCRAGAC+ CA  +  G +D      L D
Sbjct: 31  GLDGEDYGTMEVAEGEYILEAAEAQGYDWPFSCRAGACANCASIVKEGEIDMDMQQILSD 90
Query: 120 KQM-EKGFVLTCVAYPTSDCV--IYTHK 144
           +++ EK   LTC+  P +D V  +Y  K
Sbjct: 91  EEVEEKDVRLTCIGSPAADEVKIVYNAK 118

>pdb|1E0Z|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum Length = 128

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 61  GPNGEE-NEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD 119
           G +GE+    +  +  YI+++AE  G + P+SCRAGAC+ CA  +  G +D      L D
Sbjct: 31  GLDGEDYGTMEVAEGEYILEAAEAQGYDWPFSCRAGACANCASIVKEGEIDMDMQQILSD 90
Query: 120 KQM-EKGFVLTCVAYPTSDCVIYTHKESEL 148
           +++ EK   LTC+  P +D V   +    L
Sbjct: 91  EEVEEKDVRLTCIGSPAADEVKIVYNAXHL 120

>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase Length = 338

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 79  DSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD----KQMEKGFVLTCVAYP 134
           D+A    + +P  CR G C TC     SG+ D  + ++++D    ++ ++G+VL C   P
Sbjct: 28  DAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLACQCRP 87
Query: 135 TSDCVIYTHKESEL 148
           TSD V      SE+
Sbjct: 88  TSDAVFQIQASSEV 101

>pdb|1JQ4|A Chain A, [2fe-2s] Domain Of Methane Monooxygenase Reductase From Methylococcus Capsulatus (Bath) Length = 98

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 54  VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSD 113
           V+ +  +  +GE   F+   D  +I +A    + L  SCR G C+TC      G  D   
Sbjct: 4   VHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKG 63
Query: 114 GSF--LDDKQMEKGFVLTCVAYPTSDCVI---YTH 143
            S   L  ++ E+G VL C  YP +D  I   YTH
Sbjct: 64  CSVQALPPEEEEEGLVLLCRTYPKTDLEIELPYTH 98

>pdb|3ZYY|X Chain X, Reductive Activator For Corrinoid,Iron-Sulfur Protein Length = 631

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 52  MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVD 110
           MA YKV L  P  ++ E    ++  ++++    G+ +   C  AG C  C  ++V G   
Sbjct: 1   MAEYKV-LFKP--DQKEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKR 57
Query: 111 QSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
                 L  +++ +G+VL C  YP SD +I    +S L
Sbjct: 58  VESYGKLKQEEIAQGYVLACQTYPESDLIIEIPFDSRL 95

>pdb|2PIA|A Chain A, Phthalate Dioxygenase Reductase: A Modular Structure For Electron Transfer From Pyridine Nucleotides To [2fe-2s] Length = 321

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 69  FDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGF-V 127
           F+ P +  I++   D  + +P SC +G C +C   + SG  D  D    DD   EKG  +
Sbjct: 249 FEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRDMVLRDD---EKGTQI 305
Query: 128 LTCVA 132
           + CV+
Sbjct: 306 MVCVS 310

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
1a70_A	97	Ferredoxin; iron-sulfur protein, photosynthesis, e	5e-52
1iue_A	98	Ferredoxin; electron transport, iron-sulfur; 1.70A	1e-51
1awd_A	94	Ferredoxin; electron transport, eukaryotic, green	2e-51
1czp_A	98	Ferredoxin I; [2Fe-2S] protein, crystal reduced wi	5e-51
1frr_A	95	Ferredoxin I; electron transfer(iron-sulfur protei	5e-51
1frd_A	98	Heterocyst [2Fe-2S] ferredoxin; electron transport	1e-49
1wri_A	93	Ferredoxin II, ferredoxin; electron transport; 1.2	3e-47
1doi_A	128	2Fe-2S ferredoxin; halophilic protein, redox prote	5e-45
1jq4_A	98	Methane monooxygenase component C; [2Fe-2S] ferred	2e-42
3zyy_X	631	Iron-sulfur cluster binding protein; iron-sulfur-b	9e-20
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	2e-19
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	6e-12

>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A Length = 97

 Score =  159 bits (404), Expect = 5e-52
 Identities = 56/97 (57%), Positives = 74/97 (76%), Gaps = 1/97 (1%)

Query: 53  AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
           A YKV L+ P     EF  PDD YI+D+AE+ G++LPYSCRAG+CS+CAG++ +GS++Q 
Sbjct: 1   AAYKVTLVTP-TGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQD 59

Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           D SFLDD Q+++G+VLTC AYP SD  I THK+ EL 
Sbjct: 60  DQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKKEELT 96

>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1 Length = 98

 Score =  158 bits (401), Expect = 1e-51
 Identities = 47/97 (48%), Positives = 66/97 (68%), Gaps = 1/97 (1%)

Query: 53  AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
           A Y + L      E + +  +D YI+D++E   +ELPYSCR G+CSTCA ++V G VD  
Sbjct: 1   AFYNITLRTN-DGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDND 59

Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           D S+LD++Q++K ++L C  YP SDCVI THKE EL+
Sbjct: 60  DQSYLDEEQIKKKYILLCTCYPKSDCVIETHKEDELH 96

>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1 Length = 94

 Score =  157 bits (400), Expect = 2e-51
 Identities = 62/95 (65%), Positives = 74/95 (77%), Gaps = 1/95 (1%)

Query: 55  YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG 114
           YKV L  P   E   + P+D YI+D+AE+ G++LPYSCRAGACS+CAG++ SG VDQSD 
Sbjct: 1   YKVTLKTP-SGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQ 59

Query: 115 SFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SFLDD QM KGFVLTCVAYPTSD  I TH+E+ LY
Sbjct: 60  SFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAALY 94

>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ... Length = 98

 Score =  156 bits (397), Expect = 5e-51
 Identities = 65/98 (66%), Positives = 80/98 (81%), Gaps = 1/98 (1%)

Query: 53  AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
           A +KV LI    G ++E + PDD YI+D+AE+ G +LP+SCRAGACSTCAG++VSG+VDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60

Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SD SFLDD Q+E G+VLTCVAYPTSD VI THKE +LY
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 98

>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1 Length = 95

 Score =  156 bits (397), Expect = 5e-51
 Identities = 58/95 (61%), Positives = 72/95 (75%), Gaps = 1/95 (1%)

Query: 55  YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG 114
           YK  L  P   E   D P+   I+D+AE+ G +LP+SCRAGACS+C G++VSGSVD+S+G
Sbjct: 2   YKTVLKTP-SGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEG 60

Query: 115 SFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SFLDD QME+GFVLTC+A P SD VI THKE EL+
Sbjct: 61  SFLDDGQMEEGFVLTCIAIPESDLVIETHKEEELF 95

>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1 Length = 98

 Score =  153 bits (389), Expect = 1e-49
 Identities = 48/97 (49%), Positives = 66/97 (68%), Gaps = 1/97 (1%)

Query: 53  AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
           A Y+V+LI      +   +  ++  I+D AE+ G+ELP+SC +G+CS+C G++V G VDQ
Sbjct: 1   ASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQ 60

Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
           SD  FLDD+QM KGF L CV YP S+C I TH+E  L
Sbjct: 61  SDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYL 97

>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1 Length = 93

 Score =  147 bits (373), Expect = 3e-47
 Identities = 53/94 (56%), Positives = 67/94 (71%), Gaps = 2/94 (2%)

Query: 55  YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG 114
           YKV L  P   +  FD      +ID   +   +LP SC+AGACSTC G++VSG+VDQS+G
Sbjct: 2   YKVTLKTP-DGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEG 59

Query: 115 SFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
           SFLDD+Q+E+G+VLTC+A P SD VI THKE EL
Sbjct: 60  SFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93

>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A Length = 128

 Score =  142 bits (360), Expect = 5e-45
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 3/100 (3%)

Query: 51  AMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVD 110
                 + L   + +    +  +  YI+++AE  G + P+SCRAGAC+ CA  ++ G +D
Sbjct: 24  FGEASDMDL--DDEDYGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDID 81

Query: 111 QSDGSFLDDKQME-KGFVLTCVAYPTSDCVIYTHKESELY 149
                 L D+++E K   LTC+  P +D V   +    L 
Sbjct: 82  MDMQQILSDEEVEDKNVRLTCIGSPDADEVKIVYNAKHLD 121

>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2 Length = 98

 Score =  135 bits (341), Expect = 2e-42
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 52  MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
             V+ +  +  +GE   F+   D  +I +A    + L  SCR G C+TC      G  D 
Sbjct: 2   QRVHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDL 61

Query: 112 SDGSF--LDDKQMEKGFVLTCVAYPTSDCVI---YTH 143
              S   L  ++ E+G VL C  YP +D  I   YTH
Sbjct: 62  KGCSVQALPPEEEEEGLVLLCRTYPKTDLEIELPYTH 98

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans} Length = 631

 Score = 83.3 bits (205), Expect = 9e-20
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 52  MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVD 110
           MA YKV       ++ E    ++  ++++    G+ +   C  AG C  C  ++V G   
Sbjct: 1   MAEYKVLF---KPDQKEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKR 57

Query: 111 QSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
                 L  +++ +G+VL C  YP SD +I    +S L
Sbjct: 58  VESYGKLKQEEIAQGYVLACQTYPESDLIIEIPFDSRL 95

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338

 Score = 81.7 bits (202), Expect = 2e-19
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 52  MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
           M+ ++V L   +G            + D+A    + +P  CR G C TC     SG+ D 
Sbjct: 1   MSNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDM 60

Query: 112 SDGSF----LDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
            + ++    L  ++ ++G+VL C   PTSD V      SE+
Sbjct: 61  PEDNYIEDALTPEEAQQGYVLACQCRPTSDAVFQIQASSEV 101

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 321

 Score = 60.7 bits (148), Expect = 6e-12
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 68  EFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFV 127
            F+ P +  I++   D  + +P SC +G C +C   + SG  D  D   L D +     +
Sbjct: 248 SFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRD-MVLRDDEKG-TQI 305

Query: 128 LTCVAYPTSDCV 139
           + CV+   S  +
Sbjct: 306 MVCVSRAKSAEL 317

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	99.96
1awd_A	94	Ferredoxin; electron transport, eukaryotic, green	99.94
1frr_A	95	Ferredoxin I; electron transfer(iron-sulfur protei	99.94
1czp_A	98	Ferredoxin I; [2Fe-2S] protein, crystal reduced wi	99.93
1a70_A	97	Ferredoxin; iron-sulfur protein, photosynthesis, e	99.93
1iue_A	98	Ferredoxin; electron transport, iron-sulfur; 1.70A	99.92
1frd_A	98	Heterocyst [2Fe-2S] ferredoxin; electron transport	99.92
1wri_A	93	Ferredoxin II, ferredoxin; electron transport; 1.2	99.92
3lxf_A	104	Ferredoxin; iron, iron-sulfur, metal-binding, meta	99.9
1jq4_A	98	Methane monooxygenase component C; [2Fe-2S] ferred	99.9
3hui_A	126	Ferredoxin; cytochrome P450, electron transfer, ir	99.88
1xlq_A	106	Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidored	99.88
3ah7_A	113	[2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur	99.88
1uwm_A	106	Ferredoxin VI, FDVI; electron transport, metal-bin	99.88
2y5c_A	109	Adrenodoxin-like protein, mitochondrial; electron	99.88
2wlb_A	103	ETP1-FD, electron transfer protein 1, mitochondria	99.87
1b9r_A	105	Protein (terpredoxin); structure from molmol, ferr	99.87
2bt6_A	108	Adrenodoxin 1; ruthenium(II) bipyridyl complex, in	99.87
1doi_A	128	2Fe-2S ferredoxin; halophilic protein, redox prote	99.86
1i7h_A	111	Ferredoxin; 2Fe-2S,electron transport; 1.70A {Esch	99.86
3zyy_X	631	Iron-sulfur cluster binding protein; iron-sulfur-b	99.85
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	99.85
1l5p_A	93	Ferredoxin; [2Fe-2S] cluster, electron transfer, i	99.81
3n9z_C	123	Adrenodoxin; cytochrome P450, 22-hydroxycholestero	99.79
3i9v_3	783	NADH-quinone oxidoreductase subunit 3; electron tr	98.95
1t3q_A	168	Quinoline 2-oxidoreductase small subunit; QOR, mol	98.92
3c8y_A	574	Iron hydrogenase 1; dithiomethylether, H-cluster,	98.72
1kf6_B	243	Fumarate reductase iron-sulfur protein; respiratio	98.57
2bs2_B	241	Quinol-fumarate reductase iron-sulfur subunit B; 2	98.52
1rm6_C	161	4-hydroxybenzoyl-COA reductase gamma subunit; xant	98.51
3hrd_D	160	Nicotinate dehydrogenase small FES subunit; seleni	98.49
1n62_A	166	Carbon monoxide dehydrogenase small chain; CODH, m	98.46
1ffv_A	163	CUTS, iron-sulfur protein of carbon monoxide dehyd	98.44
2wdq_B	238	Succinate dehydrogenase iron-sulfur subunit; succi	98.35
2h88_B	252	Succinate dehydrogenase IP subunit; complex II, me	98.17
3nvw_A	164	Xanthine dehydrogenase/oxidase; hydroxylase, homod	97.66
2gpj_A	252	Siderophore-interacting protein; structural genomi	97.65
2w3s_A	462	Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2	97.63
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	97.63
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	97.59
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	97.56
1vlb_A	907	Aldehyde oxidoreductase; iron-sulphur cluster; HET	97.5
1tvc_A	250	Methane monooxygenase component C, methane monooxy	97.48
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	97.44
4g1v_A	399	Flavohemoglobin; three domains: globin fold, antip	97.41
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	97.4
1dgj_A	907	Aldehyde oxidoreductase; beta half-barrel, four-he	97.37
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	97.36
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	97.33
3lrx_A	158	Putative hydrogenase; alpha-beta protein, structur	97.31
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	97.3
3vr8_B	282	Iron-sulfur subunit of succinate dehydrogenase; me	97.29
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	97.21
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	97.19
3lyu_A	142	Putative hydrogenase; the C-terminal has AN alpha-	97.18
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	97.07
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	97.05
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	97.04
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	96.83
3a1f_A	186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	96.79
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	96.66
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.61
3unc_A	1332	Xanthine dehydrogenase/oxidase; oxidoreductase; HE	96.07
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	95.24
3zyv_A	1335	AOH1; oxidoreductase, molybdenum cofactor; HET: MT	94.78
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	94.6
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	94.34
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	94.28
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	93.9
1f20_A	435	Nitric-oxide synthase; nitric-xoide synthase, redu	93.78
3vo2_A	310	Putative uncharacterized protein; rossmann fold, o	93.74
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	93.73
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	93.09
4dql_A	393	Bifunctional P-450/NADPH-P450 reductase; rossmann	92.68
1ddg_A	374	Sulfite reductase (NADPH) flavoprotein alpha- comp	91.07
3qfs_A	458	CPR, P450R, NADPH--cytochrome P450 reductase; flav	91.03
2qtl_A	539	MSR;, methionine synthase reductase; alpha-beta-al	90.51
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	88.02
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	87.75

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.96  E-value=8.6e-29  Score=201.22  Aligned_cols=119  Identities=21%  Similarity=0.485  Sum_probs=104.5

Q ss_pred             CCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC----------CceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcC
Q 031979           17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA----------MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTG   85 (149)
Q Consensus        17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~----------~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~G   85 (149)
                      ..+.++|+|||.+ |+++++.+.+  |+.+++|+|.          ...++|+| ..+|  +++++++|+|||++++++|
T Consensus       191 ~~~~~vyvCGP~~m~~~v~~~l~~--~~~~~i~~E~F~~~~~~~~~~~~~~v~~-~~~~--~~~~~~~~~~ll~a~~~~g  265 (321)
T 2pia_A          191 KPAQHVYCCGPQALMDTVRDMTGH--WPSGTVHFESFGATNTNARENTPFTVRL-SRSG--TSFEIPANRSILEVLRDAN  265 (321)
T ss_dssp             CTTEEEEEESCHHHHHHHHHHTTT--SCTTCEEEECCCCCCCCCSCCCCEEEEE-TTTC--CEEEECTTSCHHHHHHHTT
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHh--CCHhhEEEEecCCCCCCCCCCccEEEEE-eCCC--eEEEECCCCcHHHHHHHcC
Confidence            4678999999999 5999999987  8888877552          23578998 5777  7899999999999999999


Q ss_pred             CCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcCC-eEEEe
Q 031979           86 MELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSD-CVIYT  142 (149)
Q Consensus        86 i~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~d-~~I~~  142 (149)
                      ++++++|+.|.||+|+++|++|++++.+ ..|++++. +|++|+||+++.+| ++|++
T Consensus       266 ~~~~~~C~~G~Cg~C~~~v~~G~~~~~~-~~l~~~e~-~g~~L~C~~~~~~d~~~i~l  321 (321)
T 2pia_A          266 VRVPSSCESGTCGSCKTALCSGEADHRD-MVLRDDEK-GTQIMVCVSRAKSAELVLDL  321 (321)
T ss_dssp             CCCCCSCSSSSSCTTEEEEEESCEECCC-SSCCTTTT-TTEEETTTCEESSSEEEECC
T ss_pred             CCCCCCCCCCCCCCCEEEEecCcccccc-CCCChHHH-CCeEEEeEeEECCCcEEEeC
Confidence            9999999999999999999999999876 57888777 99999999999998 88764

>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1

Probab=99.94  E-value=2.1e-26  Score=157.59  Aligned_cols=94  Identities=67%  Similarity=1.190  Sum_probs=86.4

Q ss_pred             eEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEE
Q 031979           55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYP  134 (149)
Q Consensus        55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~  134 (149)
                      |+|+|..++| .+++++++|+|||++|+++|++++++|+.|.||+|+++|++|++.+.+...|+++++++|++|+||+++
T Consensus         1 ~~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~   79 (94)
T 1awd_A            1 YKVTLKTPSG-EETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYP   79 (94)
T ss_dssp             CEEEEEETTE-EEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEE
T ss_pred             CEEEEEeCCC-cEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCCCCEEEEEeCCcCccccccCCHHHHhCCcEEeeECEE
Confidence            5788853555 589999999999999999999999999999999999999999999888888998888899999999999


Q ss_pred             cCCeEEEecCCcCCC
Q 031979          135 TSDCVIYTHKESELY  149 (149)
Q Consensus       135 ~~d~~I~~~~~~~~~  149 (149)
                      .+|++|++++++++|
T Consensus        80 ~~d~~i~~~~~~~~~   94 (94)
T 1awd_A           80 TSDVTILTHQEAALY   94 (94)
T ss_dssp             SSCEEEECCCGGGGC
T ss_pred             CCCEEEEecchhccC
Confidence            999999999999887

>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1

Probab=99.94  E-value=3.3e-26  Score=156.40  Aligned_cols=95  Identities=62%  Similarity=1.083  Sum_probs=87.5

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY  133 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~  133 (149)
                      +++|+|..++| .++|++++|+|||++|+++||+++++|+.|.||+|+++|.+|++.+.+...|+++++++|++|+||++
T Consensus         1 ~~~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~L~~~~~~~g~~LaC~~~   79 (95)
T 1frr_A            1 AYKTVLKTPSG-EFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAI   79 (95)
T ss_dssp             CEEEEEEETTE-EEEEEECTTCCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCE
T ss_pred             CeEEEEEeCCC-cEEEEeCCCCcHHHHHHHcCCCCCCCCCCcCCCCCEEEEEeCCccccccccCCHHHHhCCcEEeeECE
Confidence            36788843666 58899999999999999999999999999999999999999999988888999888889999999999


Q ss_pred             EcCCeEEEecCCcCCC
Q 031979          134 PTSDCVIYTHKESELY  149 (149)
Q Consensus       134 ~~~d~~I~~~~~~~~~  149 (149)
                      +.+|++|++++++.+|
T Consensus        80 ~~~~~~v~~~~~~~~~   95 (95)
T 1frr_A           80 PESDLVIETHKEEELF   95 (95)
T ss_dssp             ESSCEEEECCCTTTTC
T ss_pred             ECCCEEEEEcchhhcC
Confidence            9999999999999887

>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...

Probab=99.93  E-value=6.2e-26  Score=156.27  Aligned_cols=96  Identities=66%  Similarity=1.150  Sum_probs=87.3

Q ss_pred             eeEEEEEcCCCC-eEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeee
Q 031979           54 VYKVKLIGPNGE-ENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVA  132 (149)
Q Consensus        54 ~~~V~~~~~~G~-~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~  132 (149)
                      .++|+|..++|. .++|++++|+|||++++++|++++++|+.|.||+|+++|++|++.+.+...|+++++++|+||+||+
T Consensus         2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~   81 (98)
T 1czp_A            2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVA   81 (98)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGC
T ss_pred             ceEEEEEeCCCCCcEEEEeCCCCCHHHHHHHcCCCccCCCCCCCCCCCeEEEccCCcCccccccCCHHHhhCCeEEeeeC
Confidence            478888634432 4899999999999999999999999999999999999999999998888889988888999999999


Q ss_pred             EEcCCeEEEecCCcCCC
Q 031979          133 YPTSDCVIYTHKESELY  149 (149)
Q Consensus       133 ~~~~d~~I~~~~~~~~~  149 (149)
                      ++.+|++|++++++++|
T Consensus        82 ~~~~d~~v~~~~~~~~~   98 (98)
T 1czp_A           82 YPTSDVVIQTHKEEDLY   98 (98)
T ss_dssp             EESSCEEEECCCTTTTC
T ss_pred             EECCCEEEEeccccccC
Confidence            99999999999999987

>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A

Probab=99.93  E-value=6.6e-26  Score=155.98  Aligned_cols=95  Identities=59%  Similarity=1.122  Sum_probs=86.6

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY  133 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~  133 (149)
                      .++|+|..++| .+++++++|+|||++|+++|++++++|+.|.||+|+++|++|++.+.+...|+++++++|+||+||++
T Consensus         2 ~~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~   80 (97)
T 1a70_A            2 AYKVTLVTPTG-NVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAY   80 (97)
T ss_dssp             EEEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGCE
T ss_pred             eEEEEEEeCCc-eEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCeEEEccCCcCccccccCCHHHhhCCeEEEeECE
Confidence            36788853444 57899999999999999999999999999999999999999999988888899888889999999999


Q ss_pred             EcCCeEEEecCCcCCC
Q 031979          134 PTSDCVIYTHKESELY  149 (149)
Q Consensus       134 ~~~d~~I~~~~~~~~~  149 (149)
                      +.+|++|++++++.+|
T Consensus        81 ~~~d~~v~~~~~~~~~   96 (97)
T 1a70_A           81 PVSDVTIETHKKEELT   96 (97)
T ss_dssp             ESSCEEEECCCGGGCC
T ss_pred             ECCCEEEEeCchhhcc
Confidence            9999999999998887

>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1

Probab=99.92  E-value=9.7e-26  Score=155.39  Aligned_cols=95  Identities=49%  Similarity=0.977  Sum_probs=85.6

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY  133 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~  133 (149)
                      .++|+|. .+|..++|++++|+|||++|+++|++++++|+.|.||+|+++|++|++.+.+...|+++++++|+||+||++
T Consensus         2 ~~~v~~~-~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~   80 (98)
T 1iue_A            2 FYNITLR-TNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCY   80 (98)
T ss_dssp             EEEEEEE-ETTEEEEEEEETTSCHHHHHHHTTCCCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCE
T ss_pred             cEEEEEE-eCCCeEEEEeCCCCcHHHHHHHcCCCCCCCCCCCcCCCCEEEEeeCCccccccccCCHHHHhCCeEEEeECE
Confidence            4688885 344357899999999999999999999999999999999999999999988888999888889999999999


Q ss_pred             EcCCeEEEecCCcCCC
Q 031979          134 PTSDCVIYTHKESELY  149 (149)
Q Consensus       134 ~~~d~~I~~~~~~~~~  149 (149)
                      +.+|++|++++++.+|
T Consensus        81 ~~~d~~i~~~~~~~~~   96 (98)
T 1iue_A           81 PKSDCVIETHKEDELH   96 (98)
T ss_dssp             ESSCEEEECCCHHHHH
T ss_pred             ECCCeEEEeCChHhhc
Confidence            9999999999877654

>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1

Probab=99.92  E-value=2.9e-25  Score=152.74  Aligned_cols=95  Identities=49%  Similarity=0.965  Sum_probs=85.2

Q ss_pred             eeEEEEEcCCC-CeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeee
Q 031979           54 VYKVKLIGPNG-EENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVA  132 (149)
Q Consensus        54 ~~~V~~~~~~G-~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~  132 (149)
                      .++|+|..+++ ..++|++++|+|||++|+++||+++++|+.|.||+|+++|++|++.+.+...|+++++++|++|+||+
T Consensus         2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaC~~   81 (98)
T 1frd_A            2 SYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVT   81 (98)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGC
T ss_pred             ceEEEEEeCCCCCCEEEEeCCCCcHHHHHHHcCCCcccCCCCCCCCCCEEEEEeCCccccccccCCHHHhhCCcEEEeEC
Confidence            47888853342 14899999999999999999999999999999999999999999998888899988888999999999


Q ss_pred             EEcCCeEEEecCCcCC
Q 031979          133 YPTSDCVIYTHKESEL  148 (149)
Q Consensus       133 ~~~~d~~I~~~~~~~~  148 (149)
                      ++.+|++|++++++.+
T Consensus        82 ~~~~d~~v~~~~~~~~   97 (98)
T 1frd_A           82 YPRSNCTIKTHQEPYL   97 (98)
T ss_dssp             EESSSEEEECCCGGGC
T ss_pred             EECCCEEEEecchhhc
Confidence            9999999999988765

>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1

Probab=99.92  E-value=2.8e-25  Score=151.73  Aligned_cols=93  Identities=58%  Similarity=1.012  Sum_probs=84.3

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY  133 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~  133 (149)
                      +++|+|..++| .+++++++|+|||++|+++| +++++|+.|.||+|+++|++|.+.+.+...|+++++++|+||+||++
T Consensus         1 ~~~V~~~~~~~-~~~~~~~~g~tlL~a~~~~g-~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~~~~~g~~LaCq~~   78 (93)
T 1wri_A            1 AYKVTLKTPDG-DITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAI   78 (93)
T ss_dssp             CEEEEEEETTE-EEEEEECTTSCHHHHHHHHS-CCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCE
T ss_pred             CEEEEEEECCC-eEEEEECCCCcHHHHHHHCc-CCCCCCCCCCCCCCEEEEecCccCccccccCCHHHHhCCcEEeeeCE
Confidence            36788853444 58899999999999999999 99999999999999999999999988888999888889999999999


Q ss_pred             EcCCeEEEecCCcCC
Q 031979          134 PTSDCVIYTHKESEL  148 (149)
Q Consensus       134 ~~~d~~I~~~~~~~~  148 (149)
                      +.+|++|++++++++
T Consensus        79 ~~~d~~v~~~~~~~~   93 (93)
T 1wri_A           79 PESDVVIETHKEDEL   93 (93)
T ss_dssp             ESSCEEEECCCGGGC
T ss_pred             ECCCEEEEecccccC
Confidence            999999999998764

>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0

Probab=99.90  E-value=3.4e-24  Score=149.51  Aligned_cols=91  Identities=18%  Similarity=0.330  Sum_probs=80.5

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC-CCCCCC-CcccCCcEEEEeeCcccCC------CCCCCCh-hhccCCe
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYSCR-AGACSTCAGQMVSGSVDQS------DGSFLDD-KQMEKGF  126 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~~C~-~G~CGtC~v~v~~G~v~~~------~~~~L~~-~~~~~g~  126 (149)
                      +|+|+.++|..++|++++|+|||++++++|++ ++++|+ .|.||+|+++|++|++++.      +..+|+. +++++|+
T Consensus         2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~g~   81 (104)
T 3lxf_A            2 AILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRTPHS   81 (104)
T ss_dssp             EEEEECTTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEECGGGGGGSCCCCHHHHHHHHTSTTCCTTE
T ss_pred             EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEECCcccccCCCCCHHHHHHhccccccCCCc
Confidence            68888889988899999999999999999999 999999 8999999999999987542      2245665 6788999


Q ss_pred             EEeeeeEEcCC---eEEEecCCc
Q 031979          127 VLTCVAYPTSD---CVIYTHKES  146 (149)
Q Consensus       127 ~LaCq~~~~~d---~~I~~~~~~  146 (149)
                      ||+||+++.+|   ++|++|+++
T Consensus        82 rLaCq~~~~~dl~gl~v~ip~~~  104 (104)
T 3lxf_A           82 RLSCQITINDKLEGLEVEIAPED  104 (104)
T ss_dssp             EEGGGCBCCGGGTTCEEEECCCC
T ss_pred             EEEeeCEEccCCCCEEEEecCCC
Confidence            99999999999   999999875

>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2

Probab=99.90  E-value=2.3e-24  Score=148.31  Aligned_cols=92  Identities=29%  Similarity=0.486  Sum_probs=81.5

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccC--CCCCCCChhhccCCeEEeee
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ--SDGSFLDDKQMEKGFVLTCV  131 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~--~~~~~L~~~~~~~g~~LaCq  131 (149)
                      +++|+|..+++..++|++++|+|||++|+++|++++++|+.|.||+|+++|++|++.+  .+...|+++++++|+||+||
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~e~~~L~~~~~~~g~~LaCq   83 (98)
T 1jq4_A            4 VHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLCR   83 (98)
T ss_dssp             EEEEEEEETTTEEEEEEEESCCTHHHHHHHHTCCCCCSCCSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBCTTT
T ss_pred             cEEEEEEecCCCcEEEEeCCCChHHHHHHHcCCCCcCCCCCCCCCCCEEEEEcCccccCcccccccCHHHhcCCcEEEee
Confidence            5788885445555899999999999999999999999999999999999999999886  35667888888889999999


Q ss_pred             eEEcCCeEEEecCC
Q 031979          132 AYPTSDCVIYTHKE  145 (149)
Q Consensus       132 ~~~~~d~~I~~~~~  145 (149)
                      +++.+|++|+++.+
T Consensus        84 ~~~~~d~~v~~~~~   97 (98)
T 1jq4_A           84 TYPKTDLEIELPYT   97 (98)
T ss_dssp             CCSSCCSEEECSCC
T ss_pred             CEECCCEEEEecCC
Confidence            99999999999764

>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}

Probab=99.88  E-value=1.2e-23  Score=151.72  Aligned_cols=96  Identities=17%  Similarity=0.342  Sum_probs=83.3

Q ss_pred             CCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC-CCCCCC-CcccCCcEEEEeeCcccC------CCCCCCC-hhh
Q 031979           51 AMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYSCR-AGACSTCAGQMVSGSVDQ------SDGSFLD-DKQ  121 (149)
Q Consensus        51 ~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~~C~-~G~CGtC~v~v~~G~v~~------~~~~~L~-~~~  121 (149)
                      ...|++|+|..++|..++|++++|+|||++|+++||+ ++++|+ .|.||+|+|+|.+|+++.      .+...|+ .++
T Consensus        18 ~~~M~~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~~G~~~~l~~~~~~E~~~L~~~~e   97 (126)
T 3hui_A           18 GSHMAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFGYD   97 (126)
T ss_dssp             TCSEEEEEEECTTSCEEEEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEECGGGHHHHCCCCHHHHHHHTTSSS
T ss_pred             CCCceEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEECCCcccccCCCCHHHhhhcCchhh
Confidence            3568999997688888899999999999999999999 999999 899999999999997542      1334666 367


Q ss_pred             ccCCeEEeeeeEEcCC---eEEEecCCc
Q 031979          122 MEKGFVLTCVAYPTSD---CVIYTHKES  146 (149)
Q Consensus       122 ~~~g~~LaCq~~~~~d---~~I~~~~~~  146 (149)
                      +++||||+||+++.+|   ++|++|+++
T Consensus        98 ~~~g~RLaCQ~~~~~dldgl~V~lp~~~  125 (126)
T 3hui_A           98 VRPNSRLSCQIKVSNELDGLIVTTPERQ  125 (126)
T ss_dssp             CCTTEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             ccCCeEEeeeCEECcCCCcEEEEecCcC
Confidence            7899999999999999   999999875

>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A

Probab=99.88  E-value=1.7e-23  Score=145.87  Aligned_cols=91  Identities=20%  Similarity=0.351  Sum_probs=76.5

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC-CCCCCC-CcccCCcEEEEeeCcccC------CCCCCCChhh-c-cCC
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYSCR-AGACSTCAGQMVSGSVDQ------SDGSFLDDKQ-M-EKG  125 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~~C~-~G~CGtC~v~v~~G~v~~------~~~~~L~~~~-~-~~g  125 (149)
                      +|+|+.++|..++|++++|+|||++|+++||+ ++++|+ .|.||+|+|+|.+|+++.      .+...|+..+ . +++
T Consensus         2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~g   81 (106)
T 1xlq_A            2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPN   81 (106)
T ss_dssp             EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTT
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCC
Confidence            68885578877899999999999999999999 999996 899999999999995432      2234566544 6 889


Q ss_pred             eEEeeeeEEcC---CeEEEecCCc
Q 031979          126 FVLTCVAYPTS---DCVIYTHKES  146 (149)
Q Consensus       126 ~~LaCq~~~~~---d~~I~~~~~~  146 (149)
                      +||+||+++.+   |++|++|+.+
T Consensus        82 ~rLaCq~~~~~d~~~l~v~~p~~~  105 (106)
T 1xlq_A           82 SRLCCQIIMTPELDGIVVDVPDRQ  105 (106)
T ss_dssp             EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             cEeeeeeEeecCCCCEEEEecCcc
Confidence            99999999998   6899998764

>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}

Probab=99.88  E-value=8.8e-23  Score=143.77  Aligned_cols=94  Identities=22%  Similarity=0.317  Sum_probs=77.1

Q ss_pred             eeEEEEEcCCC---CeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCCC-----CCCCChh-hcc
Q 031979           54 VYKVKLIGPNG---EENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQSD-----GSFLDDK-QME  123 (149)
Q Consensus        54 ~~~V~~~~~~G---~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~~-----~~~L~~~-~~~  123 (149)
                      |++|+|...+|   ..++|++++|+|||++|+++||+|+++|+ .|.||+|+|+|++|.....+     ...|+.+ +++
T Consensus         1 M~~vt~~~~~g~~~~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~~~~e~~~L~~~~~~~   80 (113)
T 3ah7_A            1 MPLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLDKAWGLE   80 (113)
T ss_dssp             CCEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESGGGSCCCCHHHHHHHTTSTTCC
T ss_pred             CCEEEEEcCCCcCCCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCcccCCCCCHHHHHhhhcccccC
Confidence            46788864444   44899999999999999999999999999 79999999999999744321     2346544 678


Q ss_pred             CCeEEeeeeEEc-CCeEEEecCCcC
Q 031979          124 KGFVLTCVAYPT-SDCVIYTHKESE  147 (149)
Q Consensus       124 ~g~~LaCq~~~~-~d~~I~~~~~~~  147 (149)
                      +++||+||+++. +|++|++|.++.
T Consensus        81 ~g~rLaCq~~~~~~dl~v~~~~~~~  105 (113)
T 3ah7_A           81 AQSRLGCQVFVADEDLTIEIPKYSL  105 (113)
T ss_dssp             TTEEEGGGCBCCSSCEEEECCSCCC
T ss_pred             CCcEEeeeCEEeCCCEEEEECchhh
Confidence            899999999998 899999987643

>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A

Probab=99.88  E-value=2.2e-23  Score=145.27  Aligned_cols=92  Identities=27%  Similarity=0.402  Sum_probs=77.4

Q ss_pred             eEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC-CCCCCC-CcccCCcEEEEeeCcccCC------CCCCCChh-hcc-C
Q 031979           55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYSCR-AGACSTCAGQMVSGSVDQS------DGSFLDDK-QME-K  124 (149)
Q Consensus        55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~~C~-~G~CGtC~v~v~~G~v~~~------~~~~L~~~-~~~-~  124 (149)
                      ++|+|+.++|..++|++++|+|||++|+++||+ ++++|+ .|.||+|+++|++|++++.      +...|+.. +++ +
T Consensus         1 ~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~   80 (106)
T 1uwm_A            1 AKIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPA   80 (106)
T ss_dssp             CEEEEECTTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTT
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhcCccccCCC
Confidence            368885578877899999999999999999999 999996 8999999999999965431      23456654 577 8


Q ss_pred             CeEEeeeeEEcC---CeEEEecCCc
Q 031979          125 GFVLTCVAYPTS---DCVIYTHKES  146 (149)
Q Consensus       125 g~~LaCq~~~~~---d~~I~~~~~~  146 (149)
                      |+||+||+++.+   |++|++|+++
T Consensus        81 g~rLaCq~~~~~d~~~l~v~~p~~~  105 (106)
T 1uwm_A           81 TSRLTCQIKVTSLLDGLVVHLPEKQ  105 (106)
T ss_dssp             TEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             CcEecccCEEccCCCCEEEEecCCC
Confidence            999999999999   5999998765

>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}

Probab=99.88  E-value=1.7e-23  Score=146.72  Aligned_cols=94  Identities=21%  Similarity=0.317  Sum_probs=79.1

Q ss_pred             ceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCC-cccCCcEEEEeeCcccCC------CCCCCCh-hhccC
Q 031979           53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRA-GACSTCAGQMVSGSVDQS------DGSFLDD-KQMEK  124 (149)
Q Consensus        53 ~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~-G~CGtC~v~v~~G~v~~~------~~~~L~~-~~~~~  124 (149)
                      .+++|+|+.++|..++|++++|+|||++|+++||+++++|+. |.||+|+++|.+|++++.      +...|+. .++++
T Consensus         4 ~m~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~   83 (109)
T 2y5c_A            4 DVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQE   83 (109)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEECHHHHTTSCCCCHHHHHHHHTSTTCCT
T ss_pred             CcEEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEECCcchhhcCCCCHHHHHHHhccccCCC
Confidence            467899866788767899999999999999999999999995 999999999999975542      2234552 46788


Q ss_pred             CeEEeeeeEEcCC---eEEEecCCc
Q 031979          125 GFVLTCVAYPTSD---CVIYTHKES  146 (149)
Q Consensus       125 g~~LaCq~~~~~d---~~I~~~~~~  146 (149)
                      |+||+||+++.+|   ++|++|+.+
T Consensus        84 g~rLaCq~~~~~d~~~~~v~ip~~~  108 (109)
T 2y5c_A           84 NSRLGCQIVLTPELEGAEFTLPKIT  108 (109)
T ss_dssp             TEEEGGGCBCCGGGTTCEEECCSCC
T ss_pred             CcEeeEEeEEecCCCeEEEEecCCC
Confidence            9999999999997   999998764

>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}

Probab=99.87  E-value=1.1e-22  Score=140.99  Aligned_cols=91  Identities=24%  Similarity=0.330  Sum_probs=77.6

Q ss_pred             ceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCCCC------CCCCh-hhccC
Q 031979           53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQSDG------SFLDD-KQMEK  124 (149)
Q Consensus        53 ~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~~~------~~L~~-~~~~~  124 (149)
                      ..++|+|..++|..++|++++|+|||++|+++|++++++|+ .|.||+|+|+|.+|++++...      ..|+. ++.++
T Consensus         2 ~~~~v~~~~~~g~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E~~~L~~~~~~~~   81 (103)
T 2wlb_A            2 TGIKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLEE   81 (103)
T ss_dssp             CCEEEEEECTTCCEEEEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEECHHHHHHSCCCCHHHHHHHTTBTTCCT
T ss_pred             CceEEEEEeCCCCEEEEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEECCCchhccCCCCHHHHHHHhcccCCCC
Confidence            35789995478877899999999999999999999999999 899999999999998765432      24554 35778


Q ss_pred             CeEEeeeeEEcCC---eEEEec
Q 031979          125 GFVLTCVAYPTSD---CVIYTH  143 (149)
Q Consensus       125 g~~LaCq~~~~~d---~~I~~~  143 (149)
                      ++||+||+++.+|   ++|++|
T Consensus        82 g~rLaCq~~~~~d~~~l~v~lp  103 (103)
T 2wlb_A           82 TSRLGCQVLLRKDLDGIRVRIP  103 (103)
T ss_dssp             TEEEGGGCBCCGGGTTEEEECC
T ss_pred             CcEeeEeeEeCCCCCcEEEEcC
Confidence            9999999999999   999876

>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1

Probab=99.87  E-value=1e-23  Score=146.74  Aligned_cols=90  Identities=20%  Similarity=0.417  Sum_probs=76.8

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC-CCCCCC-CcccCCcEEEEeeCcc------cCCCCCCCC--hhhccCC
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYSCR-AGACSTCAGQMVSGSV------DQSDGSFLD--DKQMEKG  125 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~~C~-~G~CGtC~v~v~~G~v------~~~~~~~L~--~~~~~~g  125 (149)
                      +|+|+.++|..++|++++|+|||++|+++||+ ++++|+ .|.||+|+|+|.+|++      ...+...|+  .+++++|
T Consensus         2 ~V~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~~~L~~~~~~~~~g   81 (105)
T 1b9r_A            2 RVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTAG   81 (105)
T ss_dssp             EEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCTT
T ss_pred             EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCC
Confidence            68884478877899999999999999999999 999999 7999999999999943      333344666  4677899


Q ss_pred             eEEeeeeEEcC---CeEEEecCC
Q 031979          126 FVLTCVAYPTS---DCVIYTHKE  145 (149)
Q Consensus       126 ~~LaCq~~~~~---d~~I~~~~~  145 (149)
                      +||+||+++.+   |++|++|++
T Consensus        82 ~rLaCq~~~~~~~~~l~v~~p~~  104 (105)
T 1b9r_A           82 TRLSCQVFIDPSMDGLIVRVPLP  104 (105)
T ss_dssp             BSCGGGCCCCTTSTTEEEECCSC
T ss_pred             cEeeeeCEecCCCCcEEEEecCC
Confidence            99999999999   799999865

>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*

Probab=99.87  E-value=6.4e-23  Score=143.41  Aligned_cols=91  Identities=18%  Similarity=0.258  Sum_probs=76.9

Q ss_pred             ceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCC--CCCC-CcccCCcEEEEeeCcccCC------CCCCCCh-hhc
Q 031979           53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELP--YSCR-AGACSTCAGQMVSGSVDQS------DGSFLDD-KQM  122 (149)
Q Consensus        53 ~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~--~~C~-~G~CGtC~v~v~~G~v~~~------~~~~L~~-~~~  122 (149)
                      .+++|+|..++|..++|++++|+|||++|+++||+++  +.|+ .|.||+|+|+|.+|+++..      +...|+. .++
T Consensus         5 ~m~~V~~~~~~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~   84 (108)
T 2bt6_A            5 DKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGL   84 (108)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTTC
T ss_pred             ceEEEEEECCCCCEEEEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEECccccccCCCCCHHHHHHHhCcccC
Confidence            4688999657887679999999999999999999999  9998 5999999999999965432      2245664 567


Q ss_pred             cCCeEEeeeeEEcC---CeEEEec
Q 031979          123 EKGFVLTCVAYPTS---DCVIYTH  143 (149)
Q Consensus       123 ~~g~~LaCq~~~~~---d~~I~~~  143 (149)
                      ++|+||+||+++.+   |++|++|
T Consensus        85 ~~g~rLaCq~~~~~d~d~~~V~~p  108 (108)
T 2bt6_A           85 TDRSRLGCQICLTKAMDNMTVRVP  108 (108)
T ss_dssp             CTTEEEGGGCBCCGGGTTEEEECC
T ss_pred             CCCcEeeEEEEecCCCCCEEEEcC
Confidence            88999999999998   5999876

>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A

Probab=99.86  E-value=2.6e-22  Score=144.97  Aligned_cols=87  Identities=31%  Similarity=0.669  Sum_probs=77.8

Q ss_pred             eeEEEEEcCCCCeE-EEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhh-ccCCeEEeee
Q 031979           54 VYKVKLIGPNGEEN-EFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQ-MEKGFVLTCV  131 (149)
Q Consensus        54 ~~~V~~~~~~G~~~-~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~-~~~g~~LaCq  131 (149)
                      +++|+| ..+|  + ++++++|+|||++|+++|++++++|+.|.||+|+++|++|++.+.+...|++++ .++|+||+||
T Consensus        27 m~~i~i-~~~g--~~~v~v~~g~tlL~aa~~~Gi~i~~~C~~G~CgtC~v~v~~G~v~~~e~~~L~~~e~~~~g~rLaCq  103 (128)
T 1doi_A           27 ASDMDL-DDED--YGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTCI  103 (128)
T ss_dssp             HHHSCC-CTTT--EEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEEECCCSSSCHHHHHTSCEEEGGG
T ss_pred             ccEEEE-EeCC--cEEEEECCCCcHHHHHHHcCCCCccCCCccCCCCCEeEEecCCcCchhhccCCHhHhccCCEEEEEE
Confidence            456677 4788  6 999999999999999999999999999999999999999999988888899755 6899999999


Q ss_pred             eEEcCC-eEEEec
Q 031979          132 AYPTSD-CVIYTH  143 (149)
Q Consensus       132 ~~~~~d-~~I~~~  143 (149)
                      +++.+| ++|++.
T Consensus       104 ~~~~~d~i~i~~~  116 (128)
T 1doi_A          104 GSPDADEVKIVYN  116 (128)
T ss_dssp             EEECSSEEEEEEC
T ss_pred             eEEcCCeEEEEec
Confidence            999999 877764

>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1

Probab=99.86  E-value=7.7e-22  Score=138.61  Aligned_cols=94  Identities=23%  Similarity=0.383  Sum_probs=75.3

Q ss_pred             eeEEEEEcCCC---CeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCCCC-----CCCChh-hcc
Q 031979           54 VYKVKLIGPNG---EENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQSDG-----SFLDDK-QME  123 (149)
Q Consensus        54 ~~~V~~~~~~G---~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~~~-----~~L~~~-~~~  123 (149)
                      |++|+|...+|   ..++|++++|+|||++|+++|++++++|+ .|.||+|+++|.+|++.+...     ..|+.. +..
T Consensus         1 M~~i~~~~~~g~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v~~G~~~~~~~~~~e~~~L~~~~~~~   80 (111)
T 1i7h_A            1 MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLE   80 (111)
T ss_dssp             -CEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCC
T ss_pred             CCEEEEEeCCCcCCCCeEEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEEccCcccCCCCCHHHHHHhhhccccC
Confidence            35788854333   34899999999999999999999999995 899999999999998776532     223321 456


Q ss_pred             CCeEEeeeeEEc-CCeEEEecCCcC
Q 031979          124 KGFVLTCVAYPT-SDCVIYTHKESE  147 (149)
Q Consensus       124 ~g~~LaCq~~~~-~d~~I~~~~~~~  147 (149)
                      +++||+||+++. +|++|++|+++.
T Consensus        81 ~g~rLaCq~~~~~~dl~v~~~~~~~  105 (111)
T 1i7h_A           81 PESRLSCQARVTDEDLVVEIPRYTI  105 (111)
T ss_dssp             TTEEETTTCBCCSSCEEEECCSCCC
T ss_pred             CCcEEEEEEEEeCCCEEEEEChHHh
Confidence            799999999995 899999987543

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}

Probab=99.85  E-value=1.6e-21  Score=171.40  Aligned_cols=94  Identities=29%  Similarity=0.581  Sum_probs=86.9

Q ss_pred             CceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEee
Q 031979           52 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTC  130 (149)
Q Consensus        52 ~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaC  130 (149)
                      |.+++|+|. ++|  +++++++|+|||++++++|++++++|+ .|.||+|+++|++|++++.+...|+++++++|+||+|
T Consensus         1 M~m~~V~~~-~sg--~~v~v~~G~tLLeAa~~aGi~ip~~C~G~G~CGtC~v~V~~G~v~~~e~~~Ls~~e~~~G~rLaC   77 (631)
T 3zyy_X            1 MAEYKVLFK-PDQ--KEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGYVLAC   77 (631)
T ss_dssp             --CEEEEEE-TTT--EEEEECTTSCHHHHHHHHTCCCCCSCCCSSCCSTTEEEEEESCEEESCCTTCCHHHHHTTEEETT
T ss_pred             CCceEEEEe-cCC--eEEEECCCCcHHHHHHHcCCCCCcCCCCCCcCCCCEEEEeeCcccccccccCCHHHhcCCcEEee
Confidence            468999995 888  899999999999999999999999999 8999999999999999998888899988999999999


Q ss_pred             eeEEcCCeEEEecCCcCC
Q 031979          131 VAYPTSDCVIYTHKESEL  148 (149)
Q Consensus       131 q~~~~~d~~I~~~~~~~~  148 (149)
                      |+++.+|++|++|+++++
T Consensus        78 qa~~~sDl~Ielp~~~~~   95 (631)
T 3zyy_X           78 QTYPESDLIIEIPFDSRL   95 (631)
T ss_dssp             TEEECSSEEEECCTTSSC
T ss_pred             eCEECCCEEEEecchhhh
Confidence            999999999999988764

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.85  E-value=4.4e-21  Score=156.09  Aligned_cols=94  Identities=28%  Similarity=0.447  Sum_probs=83.5

Q ss_pred             CceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccC----CCCCCCChhhccCCeE
Q 031979           52 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ----SDGSFLDDKQMEKGFV  127 (149)
Q Consensus        52 ~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~----~~~~~L~~~~~~~g~~  127 (149)
                      |.+++|+|...+|..+++++++|+|||++|+++|++++++|+.|.||+|+++|++|++..    .+...|+++++++|+|
T Consensus         1 m~~~~v~~~~~~~~~~~~~~~~g~tll~a~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~l~~~~~~~g~~   80 (338)
T 1krh_A            1 MSNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYV   80 (338)
T ss_dssp             -CCEEEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEE
T ss_pred             CCceEEEEEEcCCCcEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCEEEEecCcEecccCccccccCCHHHHhCCeE
Confidence            456889986455666999999999999999999999999999999999999999998876    2567899888899999


Q ss_pred             EeeeeEEcCCeEEEecCC
Q 031979          128 LTCVAYPTSDCVIYTHKE  145 (149)
Q Consensus       128 LaCq~~~~~d~~I~~~~~  145 (149)
                      |+||+++.+|++|+++.+
T Consensus        81 LaCq~~~~~~~~v~~~~~   98 (338)
T 1krh_A           81 LACQCRPTSDAVFQIQAS   98 (338)
T ss_dssp             ETTTCEESSSEEEEESSC
T ss_pred             EEEeCEECCCeEEEEecc
Confidence            999999999999999765

>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1

Probab=99.81  E-value=1.5e-20  Score=128.18  Aligned_cols=80  Identities=20%  Similarity=0.413  Sum_probs=68.1

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC-CCCCCC-CcccCCcEEEEeeCcccCC---CCCCCChhhccCCeEEee
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYSCR-AGACSTCAGQMVSGSVDQS---DGSFLDDKQMEKGFVLTC  130 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~~C~-~G~CGtC~v~v~~G~v~~~---~~~~L~~~~~~~g~~LaC  130 (149)
                      +|+| ..+|+.++|++++|+|||++|+++|++ ++++|+ .|.||+|+++|.+|.+.+.   +...|+  ++++++||+|
T Consensus         2 ~v~i-~~~g~~~~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~--~~~~g~rLaC   78 (93)
T 1l5p_A            2 TITA-VKGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLE--DQPANARLAC   78 (93)
T ss_dssp             EEEE-EETTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHHT--TSCTTEEEGG
T ss_pred             eEEE-EeCCcEEEEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEECCCcCCCCCHHHHHHhc--CCCCCcEEee
Confidence            4666 478866799999999999999999999 999999 9999999999999987643   223455  5788999999


Q ss_pred             eeEEcCCe
Q 031979          131 VAYPTSDC  138 (149)
Q Consensus       131 q~~~~~d~  138 (149)
                      |+++.+|+
T Consensus        79 q~~~~~d~   86 (93)
T 1l5p_A           79 AITLSGEN   86 (93)
T ss_dssp             GCEECGGG
T ss_pred             ECEECCCC
Confidence            99999863

>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A

Probab=99.79  E-value=1.6e-21  Score=139.94  Aligned_cols=95  Identities=17%  Similarity=0.247  Sum_probs=19.5

Q ss_pred             CceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCC--CCCC-CcccCCcEEEEeeCcccCC------CCCCCCh-hh
Q 031979           52 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELP--YSCR-AGACSTCAGQMVSGSVDQS------DGSFLDD-KQ  121 (149)
Q Consensus        52 ~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~--~~C~-~G~CGtC~v~v~~G~v~~~------~~~~L~~-~~  121 (149)
                      +.+++|+|+.++|..+++++++|+|||++++++||+++  +.|+ .|.||+|+|+|.+|.....      +..+|+. .+
T Consensus         3 ~~~v~Vtf~~~~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~~E~~~L~~~~~   82 (123)
T 3n9z_C            3 EDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYG   82 (123)
T ss_dssp             ----------------------------------------CTTCSSSSCSTTBC--------------CHHHHHHCC---
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEeccccccCCCCChHHHhhhccccc
Confidence            45788999767887789999999999999999999999  9999 8999999999997543321      2234553 45


Q ss_pred             ccCCeEEeeeeEEcC---CeEEEecCCc
Q 031979          122 MEKGFVLTCVAYPTS---DCVIYTHKES  146 (149)
Q Consensus       122 ~~~g~~LaCq~~~~~---d~~I~~~~~~  146 (149)
                      +.+++||+||+++.+   |++|++|+..
T Consensus        83 ~~~~~RLaCQ~~v~~~ld~l~V~ip~~~  110 (123)
T 3n9z_C           83 LTDRSRLGCQICLTKSMDNMTVRVPETV  110 (123)
T ss_dssp             -----CBCC-------------------
T ss_pred             ccCCeEEeeEeEEccCCCCEEEEECccc
Confidence            678999999999998   8999998764

>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*

Probab=98.95  E-value=9.7e-10  Score=98.76  Aligned_cols=86  Identities=20%  Similarity=0.406  Sum_probs=61.3

Q ss_pred             EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCC------CCcccCCcEEEEeeCcccCCCCCCCChhh-----ccCC
Q 031979           57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSC------RAGACSTCAGQMVSGSVDQSDGSFLDDKQ-----MEKG  125 (149)
Q Consensus        57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C------~~G~CGtC~v~v~~G~v~~~~~~~L~~~~-----~~~g  125 (149)
                      |+| ..||  +++++++|+|||+|++++||.||+.|      ..|.|+.|.|+|..+..+......++++.     ...+
T Consensus         2 v~i-~idg--~~~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~~~~   78 (783)
T 3i9v_3            2 VRV-KVND--RIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPK   78 (783)
T ss_dssp             EEE-ECSS--CEEEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEECC-----------------CCBCSS
T ss_pred             eEE-EECC--EEEEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEecccccccccccccccccccccccCCC
Confidence            556 3688  78999999999999999999999999      58999999999953211111111111111     1246


Q ss_pred             eEEeeeeEEcCCeEEEecCC
Q 031979          126 FVLTCVAYPTSDCVIYTHKE  145 (149)
Q Consensus       126 ~~LaCq~~~~~d~~I~~~~~  145 (149)
                      .+++|++.+..+|+|++.++
T Consensus        79 ~~~aC~t~v~~gm~v~t~~~   98 (783)
T 3i9v_3           79 LAASCVTAVADGMVVDTLSD   98 (783)
T ss_dssp             CEETTTCBCCSSEEEESSSH
T ss_pred             cccccCCCCCCCCEEEECCH
Confidence            78999999999999998643

>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2

Probab=98.92  E-value=2e-09  Score=80.44  Aligned_cols=68  Identities=19%  Similarity=0.486  Sum_probs=53.5

Q ss_pred             eEEEEEcCCCCeEEEEcCCCchHHHHHHHc-CCC-CCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeee
Q 031979           55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDT-GME-LPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVA  132 (149)
Q Consensus        55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi~-i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~  132 (149)
                      ..|+| ..+|+..++++++|+|||++|+++ |+. ++++|+.|.||+|.|.| +|.                 .+++|..
T Consensus        10 m~i~~-~ing~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~v-dG~-----------------~v~sC~~   70 (168)
T 1t3q_A           10 MRISA-TINGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILI-DGA-----------------PMRSCLT   70 (168)
T ss_dssp             EEEEE-EETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEE-TTE-----------------EEEGGGS
T ss_pred             ceEEE-EECCEEEEEecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEE-CCC-----------------Eeechhh
Confidence            35666 368877788889999999999997 997 99999999999999987 662                 3667777


Q ss_pred             EEcC--CeEEE
Q 031979          133 YPTS--DCVIY  141 (149)
Q Consensus       133 ~~~~--d~~I~  141 (149)
                      .+..  +..|.
T Consensus        71 ~~~~~~G~~v~   81 (168)
T 1t3q_A           71 LAVQAEGCSIE   81 (168)
T ss_dssp             BGGGGTTCEEE
T ss_pred             HHHHhCCCeEE
Confidence            6654  44444

>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*

Probab=98.72  E-value=2.3e-08  Score=87.12  Aligned_cols=68  Identities=22%  Similarity=0.464  Sum_probs=58.3

Q ss_pred             EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEe
Q 031979           57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLT  129 (149)
Q Consensus        57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~La  129 (149)
                      |+| ..+|  +.+++++|+|||++++++|+.+|+.|+       .|.||.|.|.+ +|.               . .+++
T Consensus         2 v~~-~ing--~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v-~g~---------------~-~~~a   61 (574)
T 3c8y_A            2 KTI-IING--VQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEV-EGT---------------G-LVTA   61 (574)
T ss_dssp             EEE-EETT--EEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEE-TTT---------------E-EEEG
T ss_pred             eEE-EECC--EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEe-CCC---------------c-cccc
Confidence            556 3688  889999999999999999999999998       89999999987 331               2 6899


Q ss_pred             eeeEEcCCeEEEecC
Q 031979          130 CVAYPTSDCVIYTHK  144 (149)
Q Consensus       130 Cq~~~~~d~~I~~~~  144 (149)
                      |++.+.++++|.+.+
T Consensus        62 C~t~v~~gm~V~T~~   76 (574)
T 3c8y_A           62 CDTLIEDGMIINTNS   76 (574)
T ss_dssp             GGCBCCTTCEEESSC
T ss_pred             CCCCcccceeEEecc
Confidence            999999999998654

>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*

Probab=98.57  E-value=4.8e-08  Score=76.10  Aligned_cols=59  Identities=15%  Similarity=0.299  Sum_probs=48.3

Q ss_pred             eEEEEcCCCchHHHHHHHcC------CCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcCC--
Q 031979           66 ENEFDAPDDAYIIDSAEDTG------MELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSD--  137 (149)
Q Consensus        66 ~~~~~v~~g~tLLea~~~~G------i~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~d--  137 (149)
                      .+++++++|+|||++|+++|      +...++|+.|.||+|.|+| +|.                 .+++|++.+...  
T Consensus        25 ~~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v-~G~-----------------~~~aC~~~~~~~~~   86 (243)
T 1kf6_B           25 FYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NNV-----------------PKLACKTFLRDYTD   86 (243)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEE-TTE-----------------EEEGGGCBGGGCTT
T ss_pred             EEEEecCCCChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEE-CCE-----------------EEeeeeeEHhhCCC
Confidence            36888999999999999998      3367799999999999985 663                 388999888766  


Q ss_pred             -eEEEe
Q 031979          138 -CVIYT  142 (149)
Q Consensus       138 -~~I~~  142 (149)
                       ++|+-
T Consensus        87 ~~~i~~   92 (243)
T 1kf6_B           87 GMKVEA   92 (243)
T ss_dssp             CEEEEC
T ss_pred             cEEEEe
Confidence             77754

>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*

Probab=98.52  E-value=7.6e-08  Score=74.91  Aligned_cols=53  Identities=21%  Similarity=0.483  Sum_probs=42.6

Q ss_pred             eEEEEcCCCchHHHHHHHcC------CCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcC
Q 031979           66 ENEFDAPDDAYIIDSAEDTG------MELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTS  136 (149)
Q Consensus        66 ~~~~~v~~g~tLLea~~~~G------i~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~  136 (149)
                      ++++++++|+|||++|++.|      +...++|+.|+||+|.++| +|.+                 +|+|++.+..
T Consensus        25 ~~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i-~G~~-----------------~~aC~~~~~~   83 (241)
T 2bs2_B           25 EYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMI-NGRP-----------------SLACRTLTKD   83 (241)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEE-TTEE-----------------EEGGGCBGGG
T ss_pred             EEEEeCCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEE-CCCe-----------------ecchhCcHhH
Confidence            36788899999999999864      3466799999999999998 7743                 4778877654

>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*

Probab=98.51  E-value=1.8e-07  Score=69.39  Aligned_cols=62  Identities=24%  Similarity=0.492  Sum_probs=49.9

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY  133 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~  133 (149)
                      .|+| ..||+..++++++++|||++|++. |+ ....+|+.|.||+|.|.| +|.                 .+++|...
T Consensus         4 ~i~~-~vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~v-dG~-----------------~v~sC~~~   64 (161)
T 1rm6_C            4 ILRL-TLNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLV-DDR-----------------PRLACSTL   64 (161)
T ss_dssp             EEEE-EETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEE-TTE-----------------EEEGGGSB
T ss_pred             eEEE-EECCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEE-CCc-----------------EEechHHH
Confidence            5777 479977777789999999999997 76 589999999999999976 552                 36777776


Q ss_pred             EcC
Q 031979          134 PTS  136 (149)
Q Consensus       134 ~~~  136 (149)
                      +..
T Consensus        65 ~~~   67 (161)
T 1rm6_C           65 AHQ   67 (161)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            654

>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}

Probab=98.49  E-value=2.2e-07  Score=69.03  Aligned_cols=52  Identities=21%  Similarity=0.518  Sum_probs=44.3

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeC
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSG  107 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G  107 (149)
                      ...|+| ..||+.++++++++++||++|++. |+ ...++|+.|.||+|.|.| .|
T Consensus         3 ~~~i~~-~vNG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~~G~CGACtV~v-dG   56 (160)
T 3hrd_D            3 KITINL-NLNGEARSIVTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIF-NG   56 (160)
T ss_dssp             CEEEEE-EETTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSSSSSSCTTEEEE-TT
T ss_pred             cceEEE-EECCEEEEEecCCCCCHHHHHHHhcCCCccccccCCCCCCCCEEEE-CC
Confidence            346777 478987888999999999999986 87 589999999999999976 45

>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*

Probab=98.46  E-value=3e-07  Score=68.61  Aligned_cols=51  Identities=18%  Similarity=0.378  Sum_probs=43.0

Q ss_pred             eEEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeC
Q 031979           55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSG  107 (149)
Q Consensus        55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G  107 (149)
                      ..|+| ..||+.+++++++++|||++|++. |+ ...++|+.|.||+|.|.| +|
T Consensus         4 ~~i~~-~vNG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~v-dG   56 (166)
T 1n62_A            4 AHIEL-TINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDL-DG   56 (166)
T ss_dssp             EEEEE-EETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TT
T ss_pred             ceEEE-EECCEEEEEecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEE-CC
Confidence            45777 478987888899999999999985 66 479999999999999976 55

>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*

Probab=98.44  E-value=3.7e-07  Score=67.96  Aligned_cols=51  Identities=16%  Similarity=0.399  Sum_probs=42.8

Q ss_pred             eEEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeC
Q 031979           55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSG  107 (149)
Q Consensus        55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G  107 (149)
                      ..|+| ..||+.+++++++++|||++|++. |+ ..+++|+.|.||+|.|.| +|
T Consensus         4 ~~i~~-~vNG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~v-dG   56 (163)
T 1ffv_A            4 KIITV-NVNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDI-DG   56 (163)
T ss_dssp             EEEEE-EETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TT
T ss_pred             ceEEE-EECCEEEEEecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEE-CC
Confidence            35777 378977888899999999999984 66 479999999999999976 55

>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*

Probab=98.35  E-value=3.6e-07  Score=70.91  Aligned_cols=41  Identities=24%  Similarity=0.519  Sum_probs=35.7

Q ss_pred             EEEEcCC--CchHHHHHHHcC-----CCCCCCCCCcccCCcEEEEeeCc
Q 031979           67 NEFDAPD--DAYIIDSAEDTG-----MELPYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        67 ~~~~v~~--g~tLLea~~~~G-----i~i~~~C~~G~CGtC~v~v~~G~  108 (149)
                      +++++++  |+|||++|++.+     +...++|+.|.||+|.|.| +|.
T Consensus        23 ~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~   70 (238)
T 2wdq_B           23 YTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNM-NGK   70 (238)
T ss_dssp             EEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEE-TTE
T ss_pred             EEeecCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEE-CCE
Confidence            6788888  999999999987     5678899999999999987 563

>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...

Probab=98.17  E-value=1.6e-06  Score=68.03  Aligned_cols=53  Identities=25%  Similarity=0.515  Sum_probs=41.8

Q ss_pred             eEEEEcCC-CchHHHHHHHcC------CCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEcC
Q 031979           66 ENEFDAPD-DAYIIDSAEDTG------MELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTS  136 (149)
Q Consensus        66 ~~~~~v~~-g~tLLea~~~~G------i~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~~  136 (149)
                      ++++++++ |+|||++|++.+      +...++|+.|.||+|.|.| +|.                 .+|+|++.+..
T Consensus        32 ~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i-~G~-----------------~~~aC~~~~~~   91 (252)
T 2h88_B           32 TYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNI-AGG-----------------NTLACTKKIDP   91 (252)
T ss_dssp             EEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEE-TTE-----------------EEEGGGSBCCC
T ss_pred             EEEEecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEE-CCc-----------------EEccccCCHhH
Confidence            35677778 999999999986      2356699999999999985 663                 47788887654

>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*

Probab=97.66  E-value=3.9e-05  Score=57.02  Aligned_cols=49  Identities=18%  Similarity=0.416  Sum_probs=39.8

Q ss_pred             EEEEEcCCCCeE-EEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEe
Q 031979           56 KVKLIGPNGEEN-EFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMV  105 (149)
Q Consensus        56 ~V~~~~~~G~~~-~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~  105 (149)
                      .|+| ..||+.+ .++++++++||++|++. |+ ....+|+.|.||.|-|.|-
T Consensus         4 ~i~~-~vNG~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~~G~CGACTVlvd   55 (164)
T 3nvw_A            4 ELVF-FVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS   55 (164)
T ss_dssp             CEEE-EETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred             eEEE-EECCEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcCCCCCCCCEEEEc
Confidence            3666 3688543 45789999999999985 76 5999999999999999774

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}

Probab=97.65  E-value=2e-05  Score=61.33  Aligned_cols=36  Identities=19%  Similarity=0.129  Sum_probs=30.9

Q ss_pred             CCCCCeEEEcCCch-HHHHHHHHH-HcCCCCCcccccC
Q 031979           16 PRSKKFSLVKSPAS-LGSTRSVSK-AFGLKCSSFKASA   51 (149)
Q Consensus        16 ~~~~~~~y~CGP~~-m~~v~~~~~-~~g~~~~~f~~~~   51 (149)
                      |..+.++|+|||.+ |+++++.+. ++|++.+++|++.
T Consensus       188 ~~~~~~vy~CGP~~m~~av~~~l~~~~G~~~~~i~~e~  225 (252)
T 2gpj_A          188 LAGEPAVWIACEFNSMRALRRHFKQAHALPKSHFYTSS  225 (252)
T ss_dssp             CSSCEEEEEEEEHHHHHHHHHHHHHHCCCCGGGEEEEE
T ss_pred             CCCCcEEEEEcCHHHHHHHHHHHHHhcCCCHHHeEEEE
Confidence            34567899999999 699999998 8999999998763

>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*

Probab=97.63  E-value=6.4e-05  Score=64.03  Aligned_cols=48  Identities=17%  Similarity=0.388  Sum_probs=41.0

Q ss_pred             EEEEEcCCCCeEEE-EcCCCchHHHHHHHcCC-CCCCCCCCcccCCcEEEE
Q 031979           56 KVKLIGPNGEENEF-DAPDDAYIIDSAEDTGM-ELPYSCRAGACSTCAGQM  104 (149)
Q Consensus        56 ~V~~~~~~G~~~~~-~v~~g~tLLea~~~~Gi-~i~~~C~~G~CGtC~v~v  104 (149)
                      .|+| ..||+.+++ +++++++||++|++.|+ ....+|+.|.||.|-|.|
T Consensus         2 ~~~~-~vNg~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~~G~CGaCtV~v   51 (462)
T 2w3s_A            2 EIAF-LLNGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCNEGDCGACTVMI   51 (462)
T ss_dssp             EEEE-EETTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCSSSSSCTTEEEE
T ss_pred             cEEE-EECCEEEEEecCCCCCcHHHHHHHcCCCccCCCCCCCCcCCcEEEE
Confidence            4677 378977777 77899999999997687 499999999999999987

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*

Probab=97.63  E-value=8e-05  Score=57.87  Aligned_cols=56  Identities=13%  Similarity=0.179  Sum_probs=39.8

Q ss_pred             ccccCCCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCC
Q 031979           11 LFQAAPRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELP   89 (149)
Q Consensus        11 ~~~~~~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~   89 (149)
                      +++...+++.++|+|||.+ |+++++ +.+.|++           ..|.+            +.               .
T Consensus       183 ~l~~~~~~~~~vyvCGp~~m~~~v~~-l~~~gv~-----------~~vs~------------e~---------------~  223 (262)
T 1ep3_B          183 LMNEIDFEVDALYTCGAPAMLKAVAK-KYDQLER-----------LYISM------------ES---------------R  223 (262)
T ss_dssp             HHHHCCSCCSEEEEESCHHHHHHHHH-HTTTCSS-----------EEEEC------------CC---------------C
T ss_pred             HHHhhccCCCEEEEECCHHHHHHHHH-HHhCCCC-----------EEEEe------------cc---------------c
Confidence            3444333468999999999 599999 9877775           11221            11               3


Q ss_pred             CCCCCcccCCcEEEEe
Q 031979           90 YSCRAGACSTCAGQMV  105 (149)
Q Consensus        90 ~~C~~G~CGtC~v~v~  105 (149)
                      -.|+.|.||.|.+.+.
T Consensus       224 m~CG~G~C~~C~~~~~  239 (262)
T 1ep3_B          224 MACGIGACYACVEHDK  239 (262)
T ss_dssp             CSSSSSSSCTTEEEET
T ss_pred             ccCcccccccCCcccc
Confidence            6899999999999763

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1

Probab=97.59  E-value=4.8e-05  Score=57.73  Aligned_cols=34  Identities=3%  Similarity=-0.085  Sum_probs=30.0

Q ss_pred             CCCCeEEEcCCch-HHHHHHHH-HHcCCCCCccccc
Q 031979           17 RSKKFSLVKSPAS-LGSTRSVS-KAFGLKCSSFKAS   50 (149)
Q Consensus        17 ~~~~~~y~CGP~~-m~~v~~~~-~~~g~~~~~f~~~   50 (149)
                      ..+.++|+|||.+ |+++++.+ +++|++.+++|+|
T Consensus       192 ~~~~~vyvCGp~~m~~~v~~~l~~~~g~~~~~i~~E  227 (232)
T 1qfj_A          192 LAEHDIYIAGRFEMAKIARDLFCSERNAREDRLFGD  227 (232)
T ss_dssp             CTTCEEEEESCHHHHHHHHHHHHHHSCCCGGGEECT
T ss_pred             ccccEEEEECCHHHHHHHHHHHHHHcCCCHHHEEEe
Confidence            3568899999999 59999999 9999999998866

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}

Probab=97.56  E-value=3.7e-05  Score=58.65  Aligned_cols=39  Identities=10%  Similarity=0.063  Sum_probs=33.3

Q ss_pred             cCCCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCC
Q 031979           14 AAPRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAM   52 (149)
Q Consensus        14 ~~~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~   52 (149)
                      ..+..+.+||+|||.+ |+++++.+.++|++.+++|+|..
T Consensus       196 ~~~~~~~~vyvCGp~~m~~~v~~~l~~~g~~~~~i~~E~F  235 (243)
T 4eh1_A          196 ILPIEDGDFYLCGPIGFMQYVVKQLLALGVDKARIHYEVF  235 (243)
T ss_dssp             CCCTTTCEEEEEECHHHHHHHHHHHHHHTCCGGGEEEEEC
T ss_pred             eccCCCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEEecc
Confidence            3455778999999999 59999999999999999987743

>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*

Probab=97.50  E-value=0.00013  Score=66.61  Aligned_cols=50  Identities=22%  Similarity=0.497  Sum_probs=43.2

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeC
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSG  107 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G  107 (149)
                      +|+| ..||+.++++++++++||++|++. |+ ....+|+.|.||+|-|.| +|
T Consensus         3 ~~~~-~~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~g~CGaCtv~v-dg   54 (907)
T 1vlb_A            3 QKVI-TVNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVIL-DG   54 (907)
T ss_dssp             EEEE-EETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE-TT
T ss_pred             eEEE-EECCEEEEEecCCCChHHHHHHHhcCCCeecCCCCCCCcCccEEEE-CC
Confidence            5777 479988889999999999999984 66 689999999999999976 55

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2

Probab=97.48  E-value=6.9e-05  Score=57.62  Aligned_cols=34  Identities=6%  Similarity=0.083  Sum_probs=30.4

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      .+.++|+|||.+ |+++++.+.++|++.+++|+|.
T Consensus       209 ~~~~vyvCGp~~m~~~v~~~l~~~G~~~~~i~~e~  243 (250)
T 1tvc_A          209 ANPDIYLCGPPGMIDAACELVRSRGIPGEQVFFEK  243 (250)
T ss_dssp             SSSEEEEESSHHHHHHHHHHHHHHCCCCSEEEECC
T ss_pred             CCcEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEEe
Confidence            567899999999 5999999999999999988764

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5

Probab=97.44  E-value=9.2e-05  Score=60.77  Aligned_cols=34  Identities=12%  Similarity=0.102  Sum_probs=30.9

Q ss_pred             CCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCC
Q 031979           19 KKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAM   52 (149)
Q Consensus        19 ~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~   52 (149)
                      +.++|+|||.+ |+++++.|.++|++.+++|+|..
T Consensus       356 ~~~vyvCGp~~m~~~v~~~L~~~Gv~~~~i~~E~F  390 (396)
T 1gvh_A          356 TMQFYLCGPVGFMQFTAKQLVDLGVKQENIHYECF  390 (396)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred             CCEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEecc
Confidence            78999999999 69999999999999999987753

>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*

Probab=97.41  E-value=6.2e-05  Score=61.98  Aligned_cols=33  Identities=3%  Similarity=-0.100  Sum_probs=30.7

Q ss_pred             CCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           19 KKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        19 ~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      +.++|+|||.+ |+++++.|.++|++.+++|+|.
T Consensus       356 ~~~vyvCGp~~m~~~v~~~L~~~Gv~~~~i~~E~  389 (399)
T 4g1v_A          356 HADVYTCGSLAFMQAMIGHLKELEHRDDMIHYEP  389 (399)
T ss_dssp             SCEEEEEECHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCHHHeeeec
Confidence            88999999999 6999999999999999998874

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*

Probab=97.40  E-value=8.9e-05  Score=60.97  Aligned_cols=34  Identities=9%  Similarity=0.151  Sum_probs=30.9

Q ss_pred             CCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCC
Q 031979           19 KKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAM   52 (149)
Q Consensus        19 ~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~   52 (149)
                      +.++|+|||.+ |+++++.|.++|++.+++|+|..
T Consensus       362 ~~~vyvCGp~~m~~~v~~~L~~~Gv~~~~i~~E~F  396 (403)
T 1cqx_A          362 DADYYICGPIPFMRMQHDALKNLGIHEARIHYEVF  396 (403)
T ss_dssp             TCEEEEESSHHHHHHHHHHHHHTTCCGGGEEECCC
T ss_pred             CCEEEEeCCHHHHHHHHHHHHHcCCCHHHeEEeee
Confidence            78999999999 69999999999999999987753

>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1

Probab=97.37  E-value=0.00017  Score=65.93  Aligned_cols=50  Identities=18%  Similarity=0.418  Sum_probs=43.3

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeC
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSG  107 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G  107 (149)
                      +|+| ..||+.++++++++++||++|++. |+ ....+|+.|.||+|-|.| +|
T Consensus         3 ~~~~-~~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~G~CGaCtv~v-dg   54 (907)
T 1dgj_A            3 TKTL-IVNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVIL-DG   54 (907)
T ss_dssp             EEEC-EETTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE-TT
T ss_pred             eEEE-EECCEEEEEecCCCCcHHHHHHHhcCCCccCCCCCCCCcCceEEEE-CC
Confidence            5777 478988899999999999999984 76 699999999999999976 55

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}

Probab=97.36  E-value=7e-05  Score=58.65  Aligned_cols=34  Identities=6%  Similarity=0.081  Sum_probs=30.0

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      .+.++|+|||.+ |+++++.|.++|++.+++++|.
T Consensus       254 ~~~~vyvCGp~~m~~~v~~~l~~~G~~~~~i~~e~  288 (290)
T 2r6h_A          254 EDIEYYMCGPGPMANAVKGMLENLGVPRNMLFFDD  288 (290)
T ss_dssp             GGEEEEEECCHHHHHHHHHHHHHHTCCGGGEEEEC
T ss_pred             CCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEecc
Confidence            457899999999 5999999999999999988764

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}

Probab=97.33  E-value=0.00011  Score=56.07  Aligned_cols=31  Identities=10%  Similarity=0.079  Sum_probs=27.6

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCccc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFK   48 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~   48 (149)
                      .+.++|+|||.+ |+++++.+.++|++.++++
T Consensus       210 ~~~~vy~CGp~~m~~~v~~~l~~~G~~~~~i~  241 (243)
T 2eix_A          210 SDIKVMMCGPPMMNKAMQGHLETLGYTPEQWF  241 (243)
T ss_dssp             SSEEEEEESSHHHHHHHHHHHHHHTCCGGGEE
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHcCCCHHHEE
Confidence            457899999999 5999999999999998865

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}

Probab=97.31  E-value=0.00011  Score=53.38  Aligned_cols=32  Identities=13%  Similarity=0.208  Sum_probs=26.2

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS   50 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~   50 (149)
                      ...+||+|||.+ |+++++.+++.||+ ..+++|
T Consensus       112 ~~~~vy~CGP~~mm~~v~~~l~~~Gv~-~~vslE  144 (158)
T 3lrx_A          112 DWDLVFMVGPVGDQKQVFEVVKEYGVP-MKVDLH  144 (158)
T ss_dssp             CCSEEEEESCHHHHHHHHHHHGGGTCC-EEECC-
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCC-EEEEee
Confidence            346899999999 69999999999998 455655

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*

Probab=97.30  E-value=0.00014  Score=56.04  Aligned_cols=28  Identities=32%  Similarity=0.443  Sum_probs=25.8

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCC
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCS   45 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~   45 (149)
                      .+.++|+|||.+ |+++++.+.++|++.+
T Consensus       211 ~~~~vyvCGp~~m~~~v~~~l~~~G~~~~  239 (257)
T 2qdx_A          211 QDDRAMICGSPSMLEETSAVLDSFGLKIS  239 (257)
T ss_dssp             TTEEEEEEECHHHHHHHHHHHHHTTCCBC
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCChH
Confidence            568899999999 5999999999999988

>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*

Probab=97.29  E-value=0.00021  Score=57.25  Aligned_cols=42  Identities=24%  Similarity=0.536  Sum_probs=33.4

Q ss_pred             eEEEEcCC-CchHHHHHHHcCC------CCCCCCCCcccCCcEEEEeeCc
Q 031979           66 ENEFDAPD-DAYIIDSAEDTGM------ELPYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        66 ~~~~~v~~-g~tLLea~~~~Gi------~i~~~C~~G~CGtC~v~v~~G~  108 (149)
                      ..++++++ |+|||++|++.+.      ....+|+.|.||+|.|.| +|.
T Consensus        56 ~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~I-nG~  104 (282)
T 3vr8_B           56 KFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNI-AGE  104 (282)
T ss_pred             EEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEE-CCE
Confidence            35677787 9999999998654      345789999999999975 664

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=97.21  E-value=0.00011  Score=59.02  Aligned_cols=35  Identities=14%  Similarity=0.153  Sum_probs=30.6

Q ss_pred             CCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      ..+.++|+|||.+ |+++++.+.++|++.++||++.
T Consensus       299 ~~~~~vy~CGp~~m~~~v~~~l~~~G~~~~~i~~e~  334 (338)
T 1krh_A          299 GGEVDVYLCGPVPMVEAVRSWLDTQGIQPANFLFEK  334 (338)
T ss_dssp             GGCSEEEEEEEHHHHHHHHHHHHHHTCCCSEEEEEE
T ss_pred             cCCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEEEe
Confidence            3567899999999 5999999999999999988763

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*

Probab=97.19  E-value=0.00022  Score=54.57  Aligned_cols=34  Identities=3%  Similarity=0.026  Sum_probs=29.2

Q ss_pred             CCCCCeEEEcCCch-HHHHHHHH-HHcCCCCCcccc
Q 031979           16 PRSKKFSLVKSPAS-LGSTRSVS-KAFGLKCSSFKA   49 (149)
Q Consensus        16 ~~~~~~~y~CGP~~-m~~v~~~~-~~~g~~~~~f~~   49 (149)
                      +..+..+|+|||.+ |+++++.+ .++|++.++++.
T Consensus       203 ~~~~~~vy~CGp~~m~~~v~~~l~~~~G~~~~~i~~  238 (248)
T 1fdr_A          203 NKETSHVMLCGNPQMVRDTQQLLKETRQMTKHLRRR  238 (248)
T ss_dssp             CTTTEEEEEEECHHHHHHHHHHHHHHHCCCBCBTTB
T ss_pred             CccCCEEEEeCCHHHHHHHHHHHHHHcCCChHHcCC
Confidence            34678899999999 59999999 999999988654

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}

Probab=97.18  E-value=0.00025  Score=50.68  Aligned_cols=27  Identities=15%  Similarity=0.261  Sum_probs=23.9

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCC
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKC   44 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~   44 (149)
                      ....+|+|||.+ |+++.+.+++.||+.
T Consensus       107 ~~~~vy~CGP~~Mm~av~~~l~~~~~~~  134 (142)
T 3lyu_A          107 DWDLVFMVGPVGDQKQVFEVVKEYGVPM  134 (142)
T ss_dssp             CCSEEEEESCHHHHHHHHHHHHHHTCCB
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCch
Confidence            345799999999 699999999999985

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*

Probab=97.07  E-value=0.00016  Score=56.28  Aligned_cols=31  Identities=10%  Similarity=0.098  Sum_probs=27.4

Q ss_pred             CCCeEEEcCCch-HH-HHHHHHHHcCCCCCccc
Q 031979           18 SKKFSLVKSPAS-LG-STRSVSKAFGLKCSSFK   48 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~-~v~~~~~~~g~~~~~f~   48 (149)
                      .+.++|+|||.+ |+ ++++.|.++|++.++++
T Consensus       241 ~~~~vyvCGp~~m~~~~v~~~L~~~G~~~~~I~  273 (275)
T 1umk_A          241 EEPLVLMCGPPPMIQYACLPNLDHVGHPTERCF  273 (275)
T ss_dssp             GCCEEEEESCHHHHHHTTHHHHHHHTCCGGGEE
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHHcCCCHHHEE
Confidence            568899999999 58 89999999999998865

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*

Probab=97.05  E-value=0.00033  Score=54.61  Aligned_cols=32  Identities=13%  Similarity=0.137  Sum_probs=28.3

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCCCcccc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKA   49 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~   49 (149)
                      .+.++|+|||.+ |+++++.|.++|++.++++.
T Consensus       225 ~~~~vyvCGp~~m~~~v~~~l~~~G~~~~~i~~  257 (272)
T 2bgi_A          225 ETDRAMVCGSLAFNVDVMKVLESYGLREGANSE  257 (272)
T ss_dssp             TTEEEEEEECHHHHHHHHHHHHTTTCCBCBTTB
T ss_pred             CCcEEEEECCHHHHHHHHHHHHHcCCChHHcCC
Confidence            568899999999 59999999999999987654

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*

Probab=97.04  E-value=0.00041  Score=53.83  Aligned_cols=34  Identities=18%  Similarity=0.136  Sum_probs=29.5

Q ss_pred             CCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccc
Q 031979           16 PRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKA   49 (149)
Q Consensus        16 ~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~   49 (149)
                      +..+..+|+|||.+ |+++++.+.+.|++.++++.
T Consensus       225 ~~~~~~v~vCGp~~m~~~v~~~l~~~gv~~~~i~~  259 (271)
T 4fk8_A          225 SPEQDRVMLCGSTAMLKDTTELLKKAGLVEGKNSA  259 (271)
T ss_dssp             CTTTEEEEEEECHHHHHHHHHHHHHTTCCBCBTTB
T ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHcCCchhhcCC
Confidence            34678899999999 59999999999999988654

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*

Probab=96.83  E-value=0.00031  Score=56.35  Aligned_cols=33  Identities=12%  Similarity=-0.077  Sum_probs=26.2

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCC----CCCccccc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGL----KCSSFKAS   50 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~----~~~~f~~~   50 (149)
                      .+.+||+|||.+ |+++++++.++|+    +.+++|+|
T Consensus       277 ~~~~vyvCGP~~m~~~v~~~l~~~G~~~~v~~~rih~E  314 (316)
T 3jqq_A          277 YKCELYICGKKSIRYKVMDILKSHDQFDEKKKKRVHVE  314 (316)
T ss_dssp             TCCEEEEEECSTHHHHHHHHHHC----CHHHHTTEEEE
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHcCCCcccccccEEEE
Confidence            578999999999 5999999999995    77788875

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}

Probab=96.79  E-value=0.00078  Score=48.77  Aligned_cols=26  Identities=8%  Similarity=-0.018  Sum_probs=23.2

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCC
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLK   43 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~   43 (149)
                      .+..||+|||.+ |+++++.+.+.|+.
T Consensus       146 ~~~~v~~CGP~~m~~~v~~~l~~~g~~  172 (186)
T 3a1f_A          146 TRIGVFLCGPEALAETLSKQSISNSES  172 (186)
T ss_dssp             CEEEEEEESCHHHHHHHHHHHHHTCCC
T ss_pred             CcEEEEEeCCHHHHHHHHHHHHHhhcc
Confidence            467899999999 59999999999984

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*

Probab=96.66  E-value=0.00047  Score=53.32  Aligned_cols=31  Identities=6%  Similarity=0.059  Sum_probs=25.6

Q ss_pred             CCCeEEEcCCch-HHH-HHHHHHHcCCCCCccc
Q 031979           18 SKKFSLVKSPAS-LGS-TRSVSKAFGLKCSSFK   48 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~-v~~~~~~~g~~~~~f~   48 (149)
                      .+..+|+|||.+ |++ +++.|.++|++.++++
T Consensus       235 ~~~~vyvCGp~~m~~~~~~~~L~~~G~~~~~i~  267 (270)
T 2cnd_A          235 DDTLALACGPPPMIQFAISPNLEKMKYDMANSF  267 (270)
T ss_dssp             SSEEEEEECCHHHHHTTTHHHHHTTTCCHHHHE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHcCCChhhcE
Confidence            356799999999 575 6899999999988754

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.61  E-value=0.0025  Score=53.77  Aligned_cols=45  Identities=18%  Similarity=0.169  Sum_probs=35.6

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCC----CCCCC-Ccc--cCCcEEEE
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGMEL----PYSCR-AGA--CSTCAGQM  104 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i----~~~C~-~G~--CGtC~v~v  104 (149)
                      +|+|. .||  +.+++.+|+||++|+.++|+++    +.. + .|.  |+.|.|.|
T Consensus        15 ~v~~~-~dg--~~~~~~~g~ti~~a~~~~g~~~~~~~~~~-~p~g~~~~~~c~v~v   66 (493)
T 1y56_A           15 KVTIY-FEG--KELEAYEGEKLPVALLANEIYWLTTSNEG-RKRGAFTFGPVPMTV   66 (493)
T ss_dssp             EEEEE-ETT--EEEEEETTCBHHHHHHHTTCCCCEECTTS-CEECSSSSSCCEEBS
T ss_pred             eEEEE-ECC--EEEEecCCCHHHHHHHHCCCceecCCCCC-CCCccccceEEEEEE
Confidence            57773 689  8899999999999999999975    222 3 455  78899876

>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*

Probab=96.07  E-value=0.0054  Score=58.18  Aligned_cols=49  Identities=16%  Similarity=0.417  Sum_probs=40.3

Q ss_pred             EEEEEcCCCCeEEE-EcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEe
Q 031979           56 KVKLIGPNGEENEF-DAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMV  105 (149)
Q Consensus        56 ~V~~~~~~G~~~~~-~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~  105 (149)
                      .|+|. .||+.+++ .++++++||+.|++. |+ ....+|+.|.||.|-|.|-
T Consensus         5 ~i~~~-vNg~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~~g~CGaCtV~~~   56 (1332)
T 3unc_A            5 ELVFF-VNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS   56 (1332)
T ss_dssp             CEEEE-ETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred             cEEEE-ECCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcCCCCCCCcEEEEe
Confidence            47773 78955554 588999999999984 77 4999999999999999873

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4

Probab=95.24  E-value=0.0066  Score=53.81  Aligned_cols=23  Identities=4%  Similarity=0.001  Sum_probs=19.8

Q ss_pred             CCCeEEEcCCchH-HHHHHHHHHc
Q 031979           18 SKKFSLVKSPASL-GSTRSVSKAF   40 (149)
Q Consensus        18 ~~~~~y~CGP~~m-~~v~~~~~~~   40 (149)
                      .+.+||+|||.+| ++|++.|.+.
T Consensus       601 ~~~~vYvCGp~~M~~~V~~~L~~i  624 (688)
T 1tll_A          601 QGGHIYVCGDVTMAADVLKAIQRI  624 (688)
T ss_dssp             SCCEEEEEEEHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCHHHHHHHHHHHHHH
Confidence            5789999999995 9999988775

>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}

Probab=94.78  E-value=0.032  Score=52.95  Aligned_cols=49  Identities=16%  Similarity=0.400  Sum_probs=38.5

Q ss_pred             EEEEEcCCCCeEEE-EcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEe
Q 031979           56 KVKLIGPNGEENEF-DAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMV  105 (149)
Q Consensus        56 ~V~~~~~~G~~~~~-~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~  105 (149)
                      +++|. .||+..++ .+++..|||+.|+.+ ++ .-..+|+.|-||.|-|-|-
T Consensus         9 ~l~F~-vNG~~v~~~~~~p~~tLl~~LR~~~~ltGTK~gC~EG~CGACtV~v~   60 (1335)
T 3zyv_A            9 ELIFF-VNGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMIS   60 (1335)
T ss_dssp             CEEEE-ETTEEEEESSCCTTCBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEEE
T ss_pred             eEEEE-ECCEEEEeCCCCcCccHHHHHhccCCCcccccccCCCCCcceEEEEe
Confidence            57774 78843333 256899999999984 76 4889999999999999774

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...

Probab=94.60  E-value=0.011  Score=46.37  Aligned_cols=30  Identities=13%  Similarity=0.227  Sum_probs=21.3

Q ss_pred             CCCCeEEEcCCchH-HHHHHHH----HHcCCCCCc
Q 031979           17 RSKKFSLVKSPASL-GSTRSVS----KAFGLKCSS   46 (149)
Q Consensus        17 ~~~~~~y~CGP~~m-~~v~~~~----~~~g~~~~~   46 (149)
                      ..+.+||+|||.+| ++|++++    .+.|++.++
T Consensus       254 ~~~~~vyvCGp~~m~~~v~~~l~~~~~~~g~~~~~  288 (304)
T 2bmw_A          254 NQKTHTYICGPPPMEEGIDAALSAAAAKEGVTWSD  288 (304)
T ss_dssp             STTEEEEEEECTTHHHHHHHHHHHHHHTTTCCHHH
T ss_pred             cCCcEEEEECCHHHHHHHHHHHHHHHHHcCccHHH
Confidence            45678999999984 8777665    455766443

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=94.34  E-value=0.073  Score=48.67  Aligned_cols=49  Identities=8%  Similarity=0.015  Sum_probs=40.5

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCC-----------CCcccCCcEEEEe
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSC-----------RAGACSTCAGQMV  105 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C-----------~~G~CGtC~v~v~  105 (149)
                      +..|+|. .+|  +++++.+|+||+.||+++|+.+...|           ..|.|..|.+.+-
T Consensus        20 ~~~~~~~-~dG--~~~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~~~~c~~~~v~v~   79 (965)
T 2gag_A           20 EEALSLT-VDG--AKLSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAAGVEEPNALVTVS   79 (965)
T ss_dssp             EEEEEEE-ETT--EEEEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCSSTTCCSCEEEEC
T ss_pred             CCeEEEE-ECC--EEEEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccCCccCCceEEEEc
Confidence            3467773 789  89999999999999999999865544           4588999999987

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}

Probab=94.28  E-value=0.012  Score=48.69  Aligned_cols=27  Identities=7%  Similarity=-0.144  Sum_probs=22.5

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHcCCCC
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAFGLKC   44 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~g~~~   44 (149)
                      .+.+||+|||.+ |++++++|.+.|...
T Consensus       353 ~~~~vyvCGP~~M~~~v~~~L~~~g~~~  380 (402)
T 2b5o_A          353 PNTHVYMCGLKGMQPPIDETFTAEAEKR  380 (402)
T ss_dssp             TTEEEEEEECGGGHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEECCHHHHHHHHHHHHHHHHHc
Confidence            578999999999 599999998876653

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*

Probab=93.90  E-value=0.02  Score=45.25  Aligned_cols=23  Identities=0%  Similarity=0.026  Sum_probs=19.2

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAF   40 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~   40 (149)
                      .+.++|+|||.+ |+++++.|.+.
T Consensus       265 ~~~~vyvCGp~~m~~~v~~~L~~~  288 (314)
T 1fnb_A          265 DNTYVYMCGLKGMEKGIDDIMVSL  288 (314)
T ss_dssp             TTEEEEEEECTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHH
Confidence            578899999999 59888877665

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4

Probab=93.78  E-value=0.023  Score=47.52  Aligned_cols=25  Identities=4%  Similarity=-0.063  Sum_probs=20.5

Q ss_pred             CCCeEEEcCCchH-HHHHHHHHHcCC
Q 031979           18 SKKFSLVKSPASL-GSTRSVSKAFGL   42 (149)
Q Consensus        18 ~~~~~y~CGP~~m-~~v~~~~~~~g~   42 (149)
                      .+.+||+|||.+| ++|++++.+.+.
T Consensus       380 ~~~~vYvCGp~~M~~~V~~~L~~i~~  405 (435)
T 1f20_A          380 QGGHIYVCGDVTMAADVLKAIQRIMT  405 (435)
T ss_dssp             SCCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCChhHHHHHHHHHHHHHH
Confidence            5789999999995 899888876544

>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*

Probab=93.74  E-value=0.02  Score=45.25  Aligned_cols=24  Identities=0%  Similarity=0.037  Sum_probs=19.5

Q ss_pred             CCCCeEEEcCCch-HHHHHHHHHHc
Q 031979           17 RSKKFSLVKSPAS-LGSTRSVSKAF   40 (149)
Q Consensus        17 ~~~~~~y~CGP~~-m~~v~~~~~~~   40 (149)
                      ..+.+||+|||.+ |++++++|.+.
T Consensus       260 ~~~~~vyvCGp~~M~~~v~~~L~~~  284 (310)
T 3vo2_A          260 KDNTYVYMCGLKGMEKGIDDIMLNL  284 (310)
T ss_dssp             STTEEEEEEESTTHHHHHHHHHHHH
T ss_pred             cCCcEEEEeCCHHHHHHHHHHHHHH
Confidence            4578999999999 48888888754

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*

Probab=93.73  E-value=0.033  Score=43.86  Aligned_cols=23  Identities=4%  Similarity=-0.052  Sum_probs=19.1

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAF   40 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~   40 (149)
                      .+..||+|||.+ |++++++|.+.
T Consensus       262 ~~~~vyvCGp~~m~~~v~~~L~~~  285 (311)
T 3lo8_A          262 GGAHIYFCGLKGMMPGIQDTLKKV  285 (311)
T ss_dssp             TTCEEEEEECGGGHHHHHHHHHHH
T ss_pred             CCcEEEEECCHHHHHHHHHHHHHH
Confidence            578999999999 58888877664

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*

Probab=93.09  E-value=0.043  Score=43.23  Aligned_cols=28  Identities=4%  Similarity=-0.160  Sum_probs=22.6

Q ss_pred             eEEEc-CCch-HHHHHHHHHHcCCCCCccccc
Q 031979           21 FSLVK-SPAS-LGSTRSVSKAFGLKCSSFKAS   50 (149)
Q Consensus        21 ~~y~C-GP~~-m~~v~~~~~~~g~~~~~f~~~   50 (149)
                      .+|+| ||.+ |+++++.|.+.|+  ++++++
T Consensus       268 ~~yvCGGp~~m~~~v~~~L~~~g~--~~i~~e  297 (314)
T 2rc5_A          268 RFYICGGPKGMEKGVIEEIQKISG--NTGTYE  297 (314)
T ss_dssp             EEEEEESSTTTHHHHHHHHHHHHT--CCSCHH
T ss_pred             eEEEeCCcHHHHHHHHHHHHHHHh--ccchHH
Confidence            45999 9999 5999999999887  455544

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*

Probab=92.68  E-value=0.049  Score=45.05  Aligned_cols=23  Identities=4%  Similarity=-0.061  Sum_probs=18.4

Q ss_pred             CCCeEEEcCCch-H-HHHHHHHHHc
Q 031979           18 SKKFSLVKSPAS-L-GSTRSVSKAF   40 (149)
Q Consensus        18 ~~~~~y~CGP~~-m-~~v~~~~~~~   40 (149)
                      .+.+||+|||.+ | ++|+++|.+.
T Consensus       337 ~~~~vYvCGp~~~M~~~V~~~L~~i  361 (393)
T 4dql_A          337 QGAHFYICGDGSQMAPAVEATLMKS  361 (393)
T ss_dssp             TTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCchhhHHHHHHHHHHH
Confidence            578999999986 8 6888877653

>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*

Probab=91.07  E-value=0.12  Score=42.42  Aligned_cols=23  Identities=4%  Similarity=-0.045  Sum_probs=18.2

Q ss_pred             CCCeEEEcC-CchH-HHHHHHHHHc
Q 031979           18 SKKFSLVKS-PASL-GSTRSVSKAF   40 (149)
Q Consensus        18 ~~~~~y~CG-P~~m-~~v~~~~~~~   40 (149)
                      .+.++|+|| |.+| ++|++++.+.
T Consensus       320 ~~~~vYvCG~p~~M~~~V~~~L~~i  344 (374)
T 1ddg_A          320 DGAHIYVCGDANRMAKDVEQALLEV  344 (374)
T ss_dssp             TTCEEEEEECTTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHHH
Confidence            478999999 8886 8888877554

>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*

Probab=91.03  E-value=0.096  Score=44.31  Aligned_cols=23  Identities=9%  Similarity=0.018  Sum_probs=18.0

Q ss_pred             CCCeEEEcCCc-hH-HHHHHHHHHc
Q 031979           18 SKKFSLVKSPA-SL-GSTRSVSKAF   40 (149)
Q Consensus        18 ~~~~~y~CGP~-~m-~~v~~~~~~~   40 (149)
                      .+.+||+|||+ .| ++|+++|.+.
T Consensus       403 ~~~~vYvCGp~~~M~~~V~~~L~~i  427 (458)
T 3qfs_A          403 GGAHIYVCGDARNMARDVQNTFYDI  427 (458)
T ss_dssp             TTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHH
Confidence            57899999997 47 8888877543

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*

Probab=90.51  E-value=0.14  Score=44.20  Aligned_cols=22  Identities=9%  Similarity=0.018  Sum_probs=17.6

Q ss_pred             CCCeEEEcCCc-hH-HHHHHHHHH
Q 031979           18 SKKFSLVKSPA-SL-GSTRSVSKA   39 (149)
Q Consensus        18 ~~~~~y~CGP~-~m-~~v~~~~~~   39 (149)
                      .+.+||+|||. +| ++|.++|.+
T Consensus       484 ~~a~vYVCGp~~~M~~~V~~~L~~  507 (539)
T 2qtl_A          484 ENGHIYVCGDAKNMAKDVHDALVQ  507 (539)
T ss_dssp             SCCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHH
Confidence            46899999998 66 888887754

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*

Probab=88.02  E-value=0.27  Score=43.39  Aligned_cols=23  Identities=13%  Similarity=0.131  Sum_probs=17.8

Q ss_pred             CCCeEEEcCCc-hH-HHHHHHHHHc
Q 031979           18 SKKFSLVKSPA-SL-GSTRSVSKAF   40 (149)
Q Consensus        18 ~~~~~y~CGP~-~m-~~v~~~~~~~   40 (149)
                      .+.+||+|||. +| ++|+++|.+.
T Consensus       628 ~~~~vYvCGpa~~M~~~V~~~L~~i  652 (682)
T 2bpo_A          628 NGAFIYVCGDAKGMAKGVSTALVGI  652 (682)
T ss_dssp             TTCEEEEEECSTTHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCchHhHHHHHHHHHHH
Confidence            57899999995 66 8888877543

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*

Probab=87.75  E-value=0.22  Score=43.46  Aligned_cols=23  Identities=9%  Similarity=0.018  Sum_probs=17.7

Q ss_pred             CCCeEEEcCCc-hH-HHHHHHHHHc
Q 031979           18 SKKFSLVKSPA-SL-GSTRSVSKAF   40 (149)
Q Consensus        18 ~~~~~y~CGP~-~m-~~v~~~~~~~   40 (149)
                      .+.++|+|||. .| ++|+++|.+.
T Consensus       563 ~~a~vYvCGp~~~M~~~V~~~L~~i  587 (618)
T 3qe2_A          563 GGAHIYVCGDARNMARDVQNTFYDI  587 (618)
T ss_dssp             HTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCchHHHHHHHHHHHHH
Confidence            46799999997 66 8888877543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d1czpa_	98	d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (A	1e-32
d1iuea_	98	d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite	3e-32
d1awda_	94	d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [	5e-31
d1frra_	95	d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense	5e-31
d1krha3	104	d.15.4.2 (A:2-105) Benzoate dioxygenase reductase,	1e-30
d1a70a_	97	d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia	2e-30
d1wria_	93	d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense	6e-30
d1frda_	98	d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (A	8e-28
d1doia_	128	d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcu	1e-27
d1jq4a_	98	d.15.4.2 (A:) Methane monooxygenase reductase N-te	2e-27
d2piaa3	98	d.15.4.2 (A:224-321) Phthalate dioxygenase reducta	4e-20
d2fug33	95	d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chai	7e-11
d1xlqa1	106	d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas	2e-05

>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

 Score =  109 bits (273), Expect = 1e-32
 Identities = 65/98 (66%), Positives = 80/98 (81%), Gaps = 1/98 (1%)

Query: 53  AVYKVKLI-GPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
           A +KV LI    G ++E + PDD YI+D+AE+ G +LP+SCRAGACSTCAG++VSG+VDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60

Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SD SFLDD Q+E G+VLTCVAYPTSD VI THKE +LY
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 98

>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  108 bits (271), Expect = 3e-32
 Identities = 48/97 (49%), Positives = 69/97 (71%), Gaps = 1/97 (1%)

Query: 53  AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
           A Y + L   +GE+ + +  +D YI+D++E   +ELPYSCR G+CSTCA ++V G VD  
Sbjct: 1   AFYNITLRTNDGEK-KIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDND 59

Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           D S+LD++Q++K ++L C  YP SDCVI THKE EL+
Sbjct: 60  DQSYLDEEQIKKKYILLCTCYPKSDCVIETHKEDELH 96

>d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Chlorella fusca [TaxId: 3073]

 Score =  105 bits (262), Expect = 5e-31
 Identities = 64/95 (67%), Positives = 77/95 (81%), Gaps = 1/95 (1%)

Query: 55  YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG 114
           YKV L  P+GEE   + P+D YI+D+AE+ G++LPYSCRAGACS+CAG++ SG VDQSD 
Sbjct: 1   YKVTLKTPSGEE-TIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQ 59

Query: 115 SFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SFLDD QM KGFVLTCVAYPTSD  I TH+E+ LY
Sbjct: 60  SFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAALY 94

>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

 Score =  105 bits (262), Expect = 5e-31
 Identities = 59/95 (62%), Positives = 74/95 (77%), Gaps = 1/95 (1%)

Query: 55  YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG 114
           YK  L  P+GE    D P+   I+D+AE+ G +LP+SCRAGACS+C G++VSGSVD+S+G
Sbjct: 2   YKTVLKTPSGE-FTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEG 60

Query: 115 SFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           SFLDD QME+GFVLTC+A P SD VI THKE EL+
Sbjct: 61  SFLDDGQMEEGFVLTCIAIPESDLVIETHKEEELF 95

>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]} Length = 104

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Benzoate dioxygenase reductase, N-terminal domain
species: Acinetobacter sp. [TaxId: 472]

 Score =  104 bits (260), Expect = 1e-30
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 4/101 (3%)

Query: 53  AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
           + ++V L   +G            + D+A    + +P  CR G C TC     SG+ D  
Sbjct: 1   SNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMP 60

Query: 113 DGSF----LDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 149
           + ++    L  ++ ++G+VL C   PTSD V      SE+ 
Sbjct: 61  EDNYIEDALTPEEAQQGYVLACQCRPTSDAVFQIQASSEVC 101

>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  103 bits (258), Expect = 2e-30
 Identities = 57/96 (59%), Positives = 75/96 (78%), Gaps = 1/96 (1%)

Query: 53  AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQS 112
           A YKV L+ P G   EF  PDD YI+D+AE+ G++LPYSCRAG+CS+CAG++ +GS++Q 
Sbjct: 1   AAYKVTLVTPTGN-VEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQD 59

Query: 113 DGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
           D SFLDD Q+++G+VLTC AYP SD  I THK+ EL
Sbjct: 60  DQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKKEEL 95

>d1wria_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

 Score =  102 bits (255), Expect = 6e-30
 Identities = 54/94 (57%), Positives = 69/94 (73%), Gaps = 2/94 (2%)

Query: 55  YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDG 114
           YKV L  P+G+   FD      +ID   +   +LP SC+AGACSTC G++VSG+VDQS+G
Sbjct: 2   YKVTLKTPDGDI-TFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEG 59

Query: 115 SFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
           SFLDD+Q+E+G+VLTC+A P SD VI THKE EL
Sbjct: 60  SFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93

>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

 Score = 97.0 bits (241), Expect = 8e-28
 Identities = 48/97 (49%), Positives = 66/97 (68%), Gaps = 1/97 (1%)

Query: 53  AVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
           A Y+V+LI      +   +  ++  I+D AE+ G+ELP+SC +G+CS+C G++V G VDQ
Sbjct: 1   ASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQ 60

Query: 112 SDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 148
           SD  FLDD+QM KGF L CV YP S+C I TH+E  L
Sbjct: 61  SDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYL 97

>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 128

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 97.7 bits (243), Expect = 1e-27
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 62  PNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQ 121
            + +    +  +  YI+++AE  G + P+SCRAGAC+ CA  ++ G +D      L D++
Sbjct: 33  DDEDYGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEE 92

Query: 122 M-EKGFVLTCVAYPTSDCVIYTHKESELY 149
           + +K   LTC+  P +D V   +    L 
Sbjct: 93  VEDKNVRLTCIGSPDADEVKIVYNAKHLD 121

>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Methane monooxygenase reductase N-terminal domain
species: Methylococcus capsulatus [TaxId: 414]

 Score = 95.8 bits (238), Expect = 2e-27
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 52  MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQ 111
             V+ +  +  +GE   F+   D  +I +A    + L  SCR G C+TC      G  D 
Sbjct: 2   QRVHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDL 61

Query: 112 SDGSF--LDDKQMEKGFVLTCVAYPTSDCVI---YTH 143
              S   L  ++ E+G VL C  YP +D  I   YTH
Sbjct: 62  KGCSVQALPPEEEEEGLVLLCRTYPKTDLEIELPYTH 98

>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase, C-terminal domain {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Phthalate dioxygenase reductase, C-terminal domain
species: Pseudomonas cepacia, db01 [TaxId: 292]

 Score = 77.2 bits (190), Expect = 4e-20
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 10/100 (10%)

Query: 46  SFKASAMAV-----YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTC 100
           SF A+         + V+L   +G    F+ P +  I++   D  + +P SC +G C +C
Sbjct: 1   SFGATNTNARENTPFTVRL-SRSGTS--FEIPANRSILEVLRDANVRVPSSCESGTCGSC 57

Query: 101 AGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVI 140
              + SG  D  D    DD++     ++ CV+   S  ++
Sbjct: 58  KTALCSGEADHRDMVLRDDEK--GTQIMVCVSRAKSAELV 95

>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 53.3 bits (127), Expect = 7e-11
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 11/86 (12%)

Query: 68  EFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDGSFLDDKQ 121
             + P    ++D+    G ++P  C        GAC  C  ++            L++K 
Sbjct: 10  IVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKG 69

Query: 122 MEK-----GFVLTCVAYPTSDCVIYT 142
             +         +CV       V+ T
Sbjct: 70  EPEIQWQPKLAASCVTAVADGMVVDT 95

>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]} Length = 106

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas putida, putidaredoxin [TaxId: 303]

 Score = 39.2 bits (91), Expect = 2e-05
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 56  KVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR--AGACSTCAGQMVSGSVDQSD 113
           KV  +  +G   E D  D   ++ +A   G+         + +C+TC   +     D+  
Sbjct: 2   KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVP 61

Query: 114 GSFLDDKQM--------EKGFVLTCVAYPTSDC 138
            +   +  M        +    L C    T + 
Sbjct: 62  AANEREIGMLESVTAELKPNSRLCCQIIMTPEL 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d1frra_	95	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	99.96
d1czpa_	98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	99.96
d1awda_	94	2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}	99.96
d1iuea_	98	2Fe-2S ferredoxin {Malaria parasite (Plasmodium fa	99.95
d1a70a_	97	2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [Ta	99.95
d1krha3	104	Benzoate dioxygenase reductase, N-terminal domain	99.94
d1frda_	98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	99.94
d1wria_	93	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	99.94
d1jq4a_	98	Methane monooxygenase reductase N-terminal domain	99.93
d2piaa3	98	Phthalate dioxygenase reductase, C-terminal domain	99.91
d1doia_	128	2Fe-2S ferredoxin {Archaeon Haloarcula marismortui	99.85
d1e9ma_	106	2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredo	99.85
d1i7ha_	109	Adrenodoxin-like ferredoxin {Escherichia coli [Tax	99.84
d1xlqa1	106	2Fe-2S ferredoxin {Pseudomonas putida, putidaredox	99.83
d1b9ra_	105	2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [T	99.82
d2fug33	95	Nadh-quinone oxidoreductase chain 3, Nqo3, N-termi	99.8
d1l5pa_	93	2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5	99.76
d2bt6a1	104	Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}	99.75
d3c8ya2	126	Fe-only hydrogenase, N-terminal domain {Clostridiu	99.05
d1ep3b2	160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	98.57
d1t3qa2	81	Quinoline 2-oxidoreductase small subunit QorS, N-d	98.56
d1vlba2	80	Aldehyde oxidoreductase, N-terminal domain {Desulf	98.51
d1kf6b2	105	Fumarate reductase iron-sulfur protein, N-terminal	98.5
d1dgja2	80	Aldehyde oxidoreductase, N-terminal domain {Desulf	98.44
d1rm6c2	81	4-hydroxybenzoyl-CoA reductase gamma subunit HrcC,	98.39
d1ffva2	79	Carbone monoxide (CO) dehydrogenase iron-sulfur pr	98.36
d1n62a2	79	Carbone monoxide (CO) dehydrogenase iron-sulfur pr	98.33
d2bs2b2	106	Fumarate reductase iron-sulfur protein, N-terminal	98.24
d1gvha3	143	Flavohemoglobin, C-terminal domain {Escherichia co	98.22
d1jroa2	84	Xanthine dehydrogenase chain A, N-terminal domain	98.21
d1tvca2	141	Methane monooxygenase component C, MmoC {Methyloco	98.12
d1cqxa3	142	Flavohemoglobin, C-terminal domain {Alcaligenes eu	98.09
d1krha2	133	Benzoate dioxygenase reductase {Acinetobacter sp.	98.07
d2piaa2	120	Phthalate dioxygenase reductase {Pseudomonas cepac	98.0
d1v97a2	90	Xanthine oxidase, N-terminal domain {Cow (Bos taur	97.96
d1qfja2	135	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	97.95
d1nekb2	106	Succinate dehydogenase iron-sulfur protein, N-term	97.72
d1umka2	147	cytochrome b5 reductase {Human (Homo sapiens) [Tax	97.52
d2cnda2	146	Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	97.44
d1a8pa2	158	Ferredoxin reductase (flavodoxin reductase) {Azoto	97.43
d1fdra2	148	Ferredoxin reductase (flavodoxin reductase) {Esche	97.27
d2bmwa2	162	Ferredoxin reductase (flavodoxin reductase) {Cyano	96.91
d1fnda2	160	Ferredoxin reductase (flavodoxin reductase) {Spina	96.53
d1jb9a2	154	Ferredoxin reductase (flavodoxin reductase) {Maize	96.22
d1ddga2	153	Sulfite reductase flavoprotein {Escherichia coli [	95.95
d1f20a2	165	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	95.84
d1ja1a3	160	NADPH-cytochrome p450 reductase {Rat (Rattus norve	94.84
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	85.48
d1c1yb_	77	c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}	81.08
d1wxma1	73	A-Raf proto-oncogene serine/threonine-protein kina	80.31

>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

Probab=99.96  E-value=6.7e-30  Score=174.52  Aligned_cols=95  Identities=62%  Similarity=1.083  Sum_probs=88.9

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY  133 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~  133 (149)
                      .|+|+|..++| .++|++++|+|||++++++||++|++|++|.||+|+++|++|++.+.+...|+++++++||+|+||++
T Consensus         1 ~~kVt~~~~~~-~~~~~~~~g~slLda~~~~Gi~ip~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~   79 (95)
T d1frra_           1 AYKTVLKTPSG-EFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAI   79 (95)
T ss_dssp             CEEEEEEETTE-EEEEEECTTCCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCE
T ss_pred             CeEEEEECCCC-cEEEEECCCCcHHHHHHHcCCCEEeccCCcEeCCCEEEEecceEcccccccCCHHHHhcCcEEeeeCE
Confidence            47899965555 57899999999999999999999999999999999999999999998888999999999999999999


Q ss_pred             EcCCeEEEecCCcCCC
Q 031979          134 PTSDCVIYTHKESELY  149 (149)
Q Consensus       134 ~~~d~~I~~~~~~~~~  149 (149)
                      |.+|++|+++.++++|
T Consensus        80 ~~~d~~ie~~~e~~~~   95 (95)
T d1frra_          80 PESDLVIETHKEEELF   95 (95)
T ss_dssp             ESSCEEEECCCTTTTC
T ss_pred             ECCCEEEEecCccccC
Confidence            9999999999999998

>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

Probab=99.96  E-value=1e-29  Score=174.51  Aligned_cols=96  Identities=67%  Similarity=1.185  Sum_probs=90.4

Q ss_pred             eeEEEEEc-CCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeee
Q 031979           54 VYKVKLIG-PNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVA  132 (149)
Q Consensus        54 ~~~V~~~~-~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~  132 (149)
                      +|+|+|+. .+|+.++|++++|+|||++|+++||++|++|++|.||+|+++|++|.+.+.+...|++++.++|++|+||+
T Consensus         2 t~~Vtl~~~~~g~~~~~~v~~~~slL~a~~~~Gi~ip~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~   81 (98)
T d1czpa_           2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVA   81 (98)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGC
T ss_pred             eEEEEEEEcCCCCEEEEEeCcCChHHHHHHHcCCCeEEecCCcccCCCeeEEecccccccccccCChhHhcCCeEEeccC
Confidence            68898863 47777899999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             EEcCCeEEEecCCcCCC
Q 031979          133 YPTSDCVIYTHKESELY  149 (149)
Q Consensus       133 ~~~~d~~I~~~~~~~~~  149 (149)
                      +|.+|++|+++.++++|
T Consensus        82 ~~~~d~~ie~~~e~~~~   98 (98)
T d1czpa_          82 YPTSDVVIQTHKEEDLY   98 (98)
T ss_dssp             EESSCEEEECCCTTTTC
T ss_pred             EECCCEEEEcCCccccC
Confidence            99999999999999998

>d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Chlorella fusca [TaxId: 3073]

Probab=99.96  E-value=1.8e-29  Score=172.02  Aligned_cols=94  Identities=67%  Similarity=1.190  Sum_probs=87.9

Q ss_pred             eEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEE
Q 031979           55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYP  134 (149)
Q Consensus        55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~  134 (149)
                      |+|+|..++| .++|++++|+|||++|+++||+++++|+.|.||+|++++++|++++.+...|+++++++|++|+||++|
T Consensus         1 fkVTl~~~~~-~~~~~~~~~~slL~aa~~~Gi~i~~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~~   79 (94)
T d1awda_           1 YKVTLKTPSG-EETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYP   79 (94)
T ss_dssp             CEEEEEETTE-EEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEE
T ss_pred             CEEEEEeCCC-cEEEEeCCCCcHHHHHHHcCCcEEEecCCCccCCceEEEeeceEcccccccCCHHHHhCCcEEEeeCEE
Confidence            6889864444 578999999999999999999999999999999999999999999998888999999999999999999


Q ss_pred             cCCeEEEecCCcCCC
Q 031979          135 TSDCVIYTHKESELY  149 (149)
Q Consensus       135 ~~d~~I~~~~~~~~~  149 (149)
                      .+|++|++++++++|
T Consensus        80 ~~D~~i~~~~~~~~~   94 (94)
T d1awda_          80 TSDVTILTHQEAALY   94 (94)
T ss_dssp             SSCEEEECCCGGGGC
T ss_pred             CCCEEEecCChhhcC
Confidence            999999999999998

>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.95  E-value=2.6e-29  Score=172.43  Aligned_cols=95  Identities=49%  Similarity=0.973  Sum_probs=88.0

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY  133 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~  133 (149)
                      .|+|+|.. ++..++|++++|+|||++++++||++||+|+.|.||+|+++|++|.+++.+...|+++++++|++|+||++
T Consensus         2 ~~~VT~~~-~~~~~~~~~~~getlLda~~~~gi~i~~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~   80 (98)
T d1iuea_           2 FYNITLRT-NDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCY   80 (98)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTSCHHHHHHHTTCCCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCE
T ss_pred             EEEEEEEe-CCCeEEEEECCCCcHHHHHHHcCCCeEEcCCceEcCCCEEEEecCcCccCccccCChhHHhcCeEEecCCE
Confidence            58999964 44468999999999999999999999999999999999999999999998888999999999999999999


Q ss_pred             EcCCeEEEecCCcCCC
Q 031979          134 PTSDCVIYTHKESELY  149 (149)
Q Consensus       134 ~~~d~~I~~~~~~~~~  149 (149)
                      |.+|++|+++.++++|
T Consensus        81 ~~~d~~ie~~~~~~l~   96 (98)
T d1iuea_          81 PKSDCVIETHKEDELH   96 (98)
T ss_dssp             ESSCEEEECCCHHHHH
T ss_pred             ECCCEEEEcCCccccc
Confidence            9999999999988775

>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.95  E-value=6.8e-29  Score=169.97  Aligned_cols=94  Identities=60%  Similarity=1.140  Sum_probs=87.8

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY  133 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~  133 (149)
                      .|+|+|..++| .++|++++|+|||++++++||+++++|++|.||+|+++|++|++.+.+...|++++.++|+||+||++
T Consensus         2 ~fkVtv~~~~g-~~~~~~~~g~tlL~a~~~~Gi~i~~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~~~~~g~~L~C~~~   80 (97)
T d1a70a_           2 AYKVTLVTPTG-NVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAY   80 (97)
T ss_dssp             EEEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGCE
T ss_pred             cEEEEEEeCCC-CEEEEeCCCchHHHHHHHcCCCeeeCCCcEEcCCCEeEeecCccccccccccChhHhcCCeEEeeeCE
Confidence            68999975665 57899999999999999999999999999999999999999999998888999988999999999999


Q ss_pred             EcCCeEEEecCCcCC
Q 031979          134 PTSDCVIYTHKESEL  148 (149)
Q Consensus       134 ~~~d~~I~~~~~~~~  148 (149)
                      |.+|++|+++.++++
T Consensus        81 ~~~D~~Ie~~~e~el   95 (97)
T d1a70a_          81 PVSDVTIETHKKEEL   95 (97)
T ss_dssp             ESSCEEEECCCGGGC
T ss_pred             ECCCEEEEcCChhhc
Confidence            999999999998876

>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Benzoate dioxygenase reductase, N-terminal domain
species: Acinetobacter sp. [TaxId: 472]

Probab=99.94  E-value=2.4e-27  Score=164.07  Aligned_cols=96  Identities=28%  Similarity=0.474  Sum_probs=86.4

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCC----CCCCChhhccCCeEEe
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSD----GSFLDDKQMEKGFVLT  129 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~----~~~L~~~~~~~g~~La  129 (149)
                      .++|+|...+|.+++|++++|+|||++++++||+|+++|+.|.||+|+++|++|.+++.+    ...|+++++++||||+
T Consensus         2 ~~kVt~~f~dg~~~~~~~~~getlL~aa~~~gi~i~~~C~~G~CgtC~v~v~~G~~~~~~~~~~~~~l~~~e~~~g~~La   81 (104)
T d1krha3           2 NHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLA   81 (104)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEEET
T ss_pred             ceEEEEEeCCCCEEEEEeCCCCcHHHHHHHcCCCCccccCCcccCCCEEEeeeCcccccccccccccCCHHHHhcCcEEe
Confidence            467888667888889999999999999999999999999999999999999999987643    3578888889999999


Q ss_pred             eeeEEcCCeEEEecCCcCCC
Q 031979          130 CVAYPTSDCVIYTHKESELY  149 (149)
Q Consensus       130 Cq~~~~~d~~I~~~~~~~~~  149 (149)
                      ||+++.+|++|++|.+++++
T Consensus        82 Cq~~~~~d~~i~i~~~~e~~  101 (104)
T d1krha3          82 CQCRPTSDAVFQIQASSEVC  101 (104)
T ss_dssp             TTCEESSSEEEEESSCTTGG
T ss_pred             eeCEECCCEEEEecCcchhh
Confidence            99999999999999998863

>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

Probab=99.94  E-value=2.7e-27  Score=162.11  Aligned_cols=95  Identities=49%  Similarity=0.969  Sum_probs=86.7

Q ss_pred             eeEEEEEcC-CCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeee
Q 031979           54 VYKVKLIGP-NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVA  132 (149)
Q Consensus        54 ~~~V~~~~~-~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~  132 (149)
                      +|+|+|+.. +|..++|++++|+|||++|+++||+||++|+.|.||+|++++++|++.+.+...|++++.++||+|+||+
T Consensus         2 s~~Vt~~~~~~~~~~ti~v~~g~siLdaa~~~Gi~i~~~C~~G~CgtC~~~v~~G~~~~~~~~~l~~~~~~~g~~L~C~~   81 (98)
T d1frda_           2 SYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVT   81 (98)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGC
T ss_pred             eEEEEEEeCCCCceEEEEeCCCChHHHHHHHcCCCEEEecCCCeeCCCEEEeccCCcccccccccChhhhcCCeEEeeeC
Confidence            689999633 3445789999999999999999999999999999999999999999999888899999999999999999


Q ss_pred             EEcCCeEEEecCCcCC
Q 031979          133 YPTSDCVIYTHKESEL  148 (149)
Q Consensus       133 ~~~~d~~I~~~~~~~~  148 (149)
                      +|.+|++|++++++.+
T Consensus        82 ~~~~D~~Ie~~~e~~l   97 (98)
T d1frda_          82 YPRSNCTIKTHQEPYL   97 (98)
T ss_dssp             EESSSEEEECCCGGGC
T ss_pred             EECCCEEEEeCCcccc
Confidence            9999999999888754

>d1wria_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

Probab=99.94  E-value=2.7e-27  Score=160.84  Aligned_cols=93  Identities=58%  Similarity=1.008  Sum_probs=84.9

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeE
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAY  133 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~  133 (149)
                      .|+|+|..++| .++|.+++|+|||++++++ +++||+|+.|.||+|+++|++|++++.+...|++++.++|++|+||++
T Consensus         1 s~~Vt~~~~~~-~~~~~~~~~~~lLdaa~~~-~~lp~~Cr~G~CgtC~~~v~~G~v~~~~~~~L~~~e~~~g~~L~C~~~   78 (93)
T d1wria_           1 AYKVTLKTPDG-DITFDVEPGERLIDIGSEK-ADLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAI   78 (93)
T ss_dssp             CEEEEEEETTE-EEEEEECTTSCHHHHHHHH-SCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCE
T ss_pred             CEEEEEEcCCC-cEEEEeCCCCcHHHHHHhC-CCEEEEeCCcccCcCEeEeecceEeccccccCCHhHHhcCeEEeeeCE
Confidence            47899964554 5889999999999999886 599999999999999999999999998888999999999999999999


Q ss_pred             EcCCeEEEecCCcCC
Q 031979          134 PTSDCVIYTHKESEL  148 (149)
Q Consensus       134 ~~~d~~I~~~~~~~~  148 (149)
                      |.+|++|+++.++++
T Consensus        79 ~~sD~~ie~~~ed~v   93 (93)
T d1wria_          79 PESDVVIETHKEDEL   93 (93)
T ss_dssp             ESSCEEEECCCGGGC
T ss_pred             ECCCEEEEccCcCCC
Confidence            999999999999875

>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Methane monooxygenase reductase N-terminal domain
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.93  E-value=2.6e-27  Score=162.13  Aligned_cols=92  Identities=29%  Similarity=0.483  Sum_probs=84.4

Q ss_pred             ceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCC--CCCCChhhccCCeEEee
Q 031979           53 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSD--GSFLDDKQMEKGFVLTC  130 (149)
Q Consensus        53 ~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~--~~~L~~~~~~~g~~LaC  130 (149)
                      .+++|+|+.++|+.++|++++|+|||++|+++||+++++|+.|.||+|++++++|++++.+  ...|+++++++|+||+|
T Consensus         3 ~~~tvt~i~~dG~~~~~~~~~g~slLdaa~~~Gi~i~~~C~~G~Cg~C~~~v~~G~~~~~~~~~~~L~~~e~~~g~~L~C   82 (98)
T d1jq4a_           3 RVHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLC   82 (98)
T ss_dssp             CEEEEEEEETTTEEEEEEEESCCTHHHHHHHHTCCCCCSCCSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBCTT
T ss_pred             ceEEEEEEEcCCCEEEEEeCCCchHHHHHHHcCCCeEEcCCCceeCCceEEEEECeEecCccccccCCHhHHhcCeEEec
Confidence            4689998889997788999999999999999999999999999999999999999988754  45789888999999999


Q ss_pred             eeEEcCCeEEEecC
Q 031979          131 VAYPTSDCVIYTHK  144 (149)
Q Consensus       131 q~~~~~d~~I~~~~  144 (149)
                      |++|.+|++|++|.
T Consensus        83 q~~~~sD~~i~lp~   96 (98)
T d1jq4a_          83 RTYPKTDLEIELPY   96 (98)
T ss_dssp             TCCSSCCSEEECSC
T ss_pred             cCEECCCEEEEeCC
Confidence            99999999999984

>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase, C-terminal domain {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Phthalate dioxygenase reductase, C-terminal domain
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.91  E-value=7e-25  Score=150.11  Aligned_cols=86  Identities=27%  Similarity=0.593  Sum_probs=75.7

Q ss_pred             CceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeee
Q 031979           52 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCV  131 (149)
Q Consensus        52 ~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq  131 (149)
                      +.+|+|+| .++|  ++|++++|+|||++++++||+||++|+.|.||+|+++|++|++++++. .+++++ .++++|+||
T Consensus        12 ~~~~~V~l-~~~g--~~~~v~~~~slL~aa~~~Gi~ip~~C~~G~CgtC~~~v~~G~v~~~~~-~~~~~~-~~~~~L~C~   86 (98)
T d2piaa3          12 NTPFTVRL-SRSG--TSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRDM-VLRDDE-KGTQIMVCV   86 (98)
T ss_dssp             CCCEEEEE-TTTC--CEEEECTTSCHHHHHHHTTCCCCCSCSSSSSCTTEEEEEESCEECCCS-SCCTTT-TTTEEETTT
T ss_pred             CCCEEEEE-eCCC--EEEEECcCCcHHHHHHhcCCcccccCCccEeCCCEEEEEeeceecCCC-CCChHH-hCCcEEEee
Confidence            46799999 6888  789999999999999999999999999999999999999999988754 455544 579999999


Q ss_pred             eEEcCC-eEEEe
Q 031979          132 AYPTSD-CVIYT  142 (149)
Q Consensus       132 ~~~~~d-~~I~~  142 (149)
                      ++|.+| ++|++
T Consensus        87 s~~~s~~lvidl   98 (98)
T d2piaa3          87 SRAKSAELVLDL   98 (98)
T ss_dssp             CEESSSEEEECC
T ss_pred             CEECCCCEEEeC
Confidence            999985 78864

>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.85  E-value=1.3e-21  Score=139.67  Aligned_cols=80  Identities=33%  Similarity=0.702  Sum_probs=69.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHcCCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhh-ccCCeEEeeeeEEcCCe-EE
Q 031979           63 NGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQ-MEKGFVLTCVAYPTSDC-VI  140 (149)
Q Consensus        63 ~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~-~~~g~~LaCq~~~~~d~-~I  140 (149)
                      ++...+|++++|+|||+||+++||.||++|+.|.||+|++++++|++++.+...+++.+ .++|++|+||++|.+|. +|
T Consensus        34 ~~~~~t~~v~~g~tlLdaa~~aGi~ip~~Cr~G~CgsC~~~v~~G~~~~~~~~~l~~~e~~~~g~~L~Cqa~p~sD~v~v  113 (128)
T d1doia_          34 DEDYGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTCIGSPDADEVKI  113 (128)
T ss_dssp             TTTEEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEEECCCSSSCHHHHHTSCEEEGGGEEECSSEEEE
T ss_pred             CCCceEEEECcCChHHHHHHHcCCCCccCCCCCcCCCCceEeeeCCcccCcccCCCHHHHHhCCEEEeeeCEECCCeEEE
Confidence            44447899999999999999999999999999999999999999999988777777654 56699999999999994 34


Q ss_pred             Ee
Q 031979          141 YT  142 (149)
Q Consensus       141 ~~  142 (149)
                      ..
T Consensus       114 ~~  115 (128)
T d1doia_         114 VY  115 (128)
T ss_dssp             EE
T ss_pred             EC
Confidence            33

>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]

Probab=99.85  E-value=1.1e-21  Score=135.56  Aligned_cols=91  Identities=26%  Similarity=0.366  Sum_probs=74.7

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC-CCCCCC-CcccCCcEEEEeeCcccCCCC------CC--CChhhccCC
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYSCR-AGACSTCAGQMVSGSVDQSDG------SF--LDDKQMEKG  125 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~~C~-~G~CGtC~v~v~~G~v~~~~~------~~--L~~~~~~~g  125 (149)
                      +|+|+.++|+.++|++++|+|||++|+++||+ +++.|+ .|.||+|+|+|.+|+.+....      ..  ++.+...++
T Consensus         2 KIt~i~~dG~~~~i~~~~G~tLl~a~~~~gi~~i~~~CgG~g~C~tC~V~i~~g~~~~l~~~~~~E~~~L~~~~~~~~~~   81 (106)
T d1e9ma_           2 KIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPAT   81 (106)
T ss_dssp             EEEEECTTSCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTTT
T ss_pred             EEEEECCCCCEEEEEECCCChHHHHHHHcCCCCcCcccccCceecceEEEeccCccccCCCCCHHHHHHHhhccccCCCc
Confidence            68887889988899999999999999999995 999998 799999999999997653221      11  233345678


Q ss_pred             eEEeeeeEEcCC---eEEEecCCc
Q 031979          126 FVLTCVAYPTSD---CVIYTHKES  146 (149)
Q Consensus       126 ~~LaCq~~~~~d---~~I~~~~~~  146 (149)
                      +||+||.++..|   ++|++|++|
T Consensus        82 sRLaCQ~~v~~d~~gl~V~iPe~q  105 (106)
T d1e9ma_          82 SRLTCQIKVTSLLDGLVVHLPEKQ  105 (106)
T ss_dssp             EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             eEeeEeCEeccccCCEEEECCccc
Confidence            999999999764   899998764

>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin-like ferredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=3.9e-21  Score=133.38  Aligned_cols=83  Identities=27%  Similarity=0.444  Sum_probs=69.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-CcccCCcEEEEeeCcccCCCC-----CCC-ChhhccCCeEEeeeeEE
Q 031979           62 PNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-AGACSTCAGQMVSGSVDQSDG-----SFL-DDKQMEKGFVLTCVAYP  134 (149)
Q Consensus        62 ~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-~G~CGtC~v~v~~G~v~~~~~-----~~L-~~~~~~~g~~LaCq~~~  134 (149)
                      ++|  ++|++++|+|||++|+++||++++.|+ .|.||+|+++|.+|.......     ..| ...+..+++||+||+++
T Consensus        13 p~g--~~v~~~~G~tLl~aa~~~gi~i~~~CgG~g~CgtC~v~v~~G~~~l~~~~~~E~~~l~~~~~~~~~~RLaCQ~~v   90 (109)
T d1i7ha_          13 PDG--AVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQARV   90 (109)
T ss_dssp             TTC--EEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCCTTEEETTTCBC
T ss_pred             CCC--cEEEeCCCCcHHHHHHHcCCCCCcCCCCcceeCCeEEEeecCccccCCCChHHhhhhhccccCCCCeEEEEeeEE
Confidence            678  899999999999999999999999996 899999999999997664321     122 22346789999999999


Q ss_pred             cC-CeEEEecCCc
Q 031979          135 TS-DCVIYTHKES  146 (149)
Q Consensus       135 ~~-d~~I~~~~~~  146 (149)
                      .+ |++|++|+..
T Consensus        91 ~~~dl~V~lP~~t  103 (109)
T d1i7ha_          91 TDEDLVVEIPRYT  103 (109)
T ss_dssp             CSSCEEEECCSCC
T ss_pred             CCCCEEEEeCccc
Confidence            65 9999998753

>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas putida, putidaredoxin [TaxId: 303]

Probab=99.83  E-value=1.4e-20  Score=130.05  Aligned_cols=91  Identities=20%  Similarity=0.384  Sum_probs=75.2

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC-CCCCCC-CcccCCcEEEEeeCcccCC------CCCCCC--hhhccCC
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYSCR-AGACSTCAGQMVSGSVDQS------DGSFLD--DKQMEKG  125 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~~C~-~G~CGtC~v~v~~G~v~~~------~~~~L~--~~~~~~g  125 (149)
                      +|+|+.++|..++|++++|+|||++|+++||+ +++.|+ .|.||+|+|+|.+|..+..      +...|.  ..++.++
T Consensus         2 KIt~i~~dG~~~~i~~~~G~tLl~aa~~~gi~~i~~~CgG~~~C~tC~V~v~~g~~~~l~~~~~~E~~~L~~~~~~~~~~   81 (106)
T d1xlqa1           2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPN   81 (106)
T ss_dssp             EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTT
T ss_pred             EEEEECCCCCEEEEEeCCCChHHHHHHHhCcCCchhhhhhccccccceEEecccchhcCCCCCHHHHHHHHhhhccCCCC
Confidence            68888889988999999999999999999995 999998 8999999999999965532      112332  2345688


Q ss_pred             eEEeeeeEEcCC---eEEEecCCc
Q 031979          126 FVLTCVAYPTSD---CVIYTHKES  146 (149)
Q Consensus       126 ~~LaCq~~~~~d---~~I~~~~~~  146 (149)
                      +||+||.++.+|   ++|++|+++
T Consensus        82 sRLaCQ~~v~~~~dgl~V~vPe~q  105 (106)
T d1xlqa1          82 SRLCCQIIMTPELDGIVVDVPDRQ  105 (106)
T ss_dssp             EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             cEeeeeeEecccCCCEEEECCCcc
Confidence            999999999764   899998865

>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas sp., terpredoxin [TaxId: 306]

Probab=99.82  E-value=1.3e-21  Score=135.10  Aligned_cols=91  Identities=20%  Similarity=0.395  Sum_probs=75.0

Q ss_pred             eEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC-CCCCCC-CcccCCcEEEEeeCcccC------CCCCCC--ChhhccC
Q 031979           55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYSCR-AGACSTCAGQMVSGSVDQ------SDGSFL--DDKQMEK  124 (149)
Q Consensus        55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~~C~-~G~CGtC~v~v~~G~v~~------~~~~~L--~~~~~~~  124 (149)
                      ++|+|+.++|..++|++++|+|||++|.++||+ +++.|+ .|.||+|+|+|.+|+.+.      .+..+|  ..+++.+
T Consensus         1 Pkvt~i~~dG~~~~v~~~~G~tLl~aa~~~gi~~i~~~CgG~g~C~tC~V~v~~g~~~~l~~~~~~E~~~l~~~~~~~~~   80 (105)
T d1b9ra_           1 PRVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTA   80 (105)
T ss_dssp             CEEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCT
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCcccccCCCccccceEEEecccccccCCCCCHHHHHHHHhccccCCC
Confidence            478887789988999999999999999999996 999996 899999999999996542      111222  2345678


Q ss_pred             CeEEeeeeEEcCC---eEEEecCC
Q 031979          125 GFVLTCVAYPTSD---CVIYTHKE  145 (149)
Q Consensus       125 g~~LaCq~~~~~d---~~I~~~~~  145 (149)
                      ++||+||.++.+|   ++|++|.+
T Consensus        81 ~sRLaCQ~~v~~dldgl~V~vP~~  104 (105)
T d1b9ra_          81 GTRLSCQVFIDPSMDGLIVRVPLP  104 (105)
T ss_dssp             TBSCGGGCCCCTTSTTEEEECCSC
T ss_pred             CcEeEeeeEecccCCCeEEEecCC
Confidence            9999999999875   79999875

>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=2.3e-20  Score=126.08  Aligned_cols=83  Identities=19%  Similarity=0.345  Sum_probs=61.8

Q ss_pred             EEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC------CcccCCcEEEEeeCcccCCCC-----CCCChhhccCC
Q 031979           57 VKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCR------AGACSTCAGQMVSGSVDQSDG-----SFLDDKQMEKG  125 (149)
Q Consensus        57 V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~------~G~CGtC~v~v~~G~v~~~~~-----~~L~~~~~~~g  125 (149)
                      |+| ..+|  ++|++++|+|||+|++++||+||+.|+      .|.||+|+|+|.+|..++...     ..+...+...+
T Consensus         2 v~i-~i~g--~~~~v~~g~tll~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~g~~~~~~~~~~~~~~~~~~~~~~~   78 (95)
T d2fug33           2 VRV-KVND--RIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPK   78 (95)
T ss_dssp             EEE-ECSS--CEEEECTTCBHHHHHHHHTCCCCCCSCCTTSCCCSCSTTSEEEEEC------------------CCBCSS
T ss_pred             cEE-EECC--EEEEECCCCcHHHHHHhcCCCCCccccCCCcCcccccCCCEEEEccCccccCcccchhhhhhhHhhcCCC
Confidence            344 2578  789999999999999999999999996      599999999999998776432     33444455678


Q ss_pred             eEEeeeeEEcCCeEEEe
Q 031979          126 FVLTCVAYPTSDCVIYT  142 (149)
Q Consensus       126 ~~LaCq~~~~~d~~I~~  142 (149)
                      +||+||+++.+|++|++
T Consensus        79 ~rlaCqt~v~~gm~V~T   95 (95)
T d2fug33          79 LAASCVTAVADGMVVDT   95 (95)
T ss_dssp             CEETTTCBCCTTCEEES
T ss_pred             ccCcCcCCCCCCCEEeC
Confidence            99999999999999974

>d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5722]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Trichomonas vaginalis [TaxId: 5722]

Probab=99.76  E-value=3.4e-19  Score=120.44  Aligned_cols=84  Identities=20%  Similarity=0.413  Sum_probs=69.5

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHcCCC-CCCCCC-CcccCCcEEEEeeCcccCCC---CCCCChhhccCCeEEee
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDTGME-LPYSCR-AGACSTCAGQMVSGSVDQSD---GSFLDDKQMEKGFVLTC  130 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~-i~~~C~-~G~CGtC~v~v~~G~v~~~~---~~~L~~~~~~~g~~LaC  130 (149)
                      +|+++ .+|..++|++++|+|||++++++||+ +++.|+ .|.||+|+|+|.+|.+....   ...|  +++.+++||+|
T Consensus         2 tvtv~-~~G~~~~i~~~~G~tLl~al~~~gi~~i~~~CgG~~~C~tC~v~v~~g~~~~~~~~E~~~l--~~~~~~~RLaC   78 (93)
T d1l5pa_           2 TITAV-KGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFL--EDQPANARLAC   78 (93)
T ss_dssp             EEEEE-ETTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHH--TTSCTTEEEGG
T ss_pred             eEEEE-ECCeEEEEEeCCCchHHHHHHHhCCCCccccccCCCEeCccEEEEcCCccCCCChHHHHHh--hccCCCcEEEE
Confidence            57775 78988999999999999999999995 999997 89999999999999765532   1223  35678999999


Q ss_pred             eeEEcC---CeEEEe
Q 031979          131 VAYPTS---DCVIYT  142 (149)
Q Consensus       131 q~~~~~---d~~I~~  142 (149)
                      |.+..+   +++|++
T Consensus        79 Qi~l~~eldg~~v~~   93 (93)
T d1l5pa_          79 AITLSGENDGAVFEL   93 (93)
T ss_dssp             GCEECGGGTTCEEEC
T ss_pred             EeEeccccCCeEEEC
Confidence            999987   467664

>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=7.5e-19  Score=120.77  Aligned_cols=90  Identities=18%  Similarity=0.248  Sum_probs=72.6

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCCC--CC-CcccCCcEEEEeeCcccCC------CCCCCCh-hhcc
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYS--CR-AGACSTCAGQMVSGSVDQS------DGSFLDD-KQME  123 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~--C~-~G~CGtC~v~v~~G~v~~~------~~~~L~~-~~~~  123 (149)
                      ..+|+|+.++|..++++++.|+|||++++++|+++++.  |+ .|.||+|+|++.+|..+..      |..+|+. .+..
T Consensus         2 ~i~i~~i~~dG~~~~i~~~~G~tLl~~~~~~gi~i~~~~~CgG~~~C~tC~V~v~~~~~~~l~~~~~~E~~~L~~~~~~~   81 (104)
T d2bt6a1           2 KITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLT   81 (104)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTTCC
T ss_pred             eEEEEEECCCCCEEEEEeCCCchHHHHHHHcCCCcccccccCCccccceEEEEecccchhhcCCCCHHHHHHhhccCCCC
Confidence            46788877899888999999999999999999998865  66 8999999999999865532      1223332 3467


Q ss_pred             CCeEEeeeeEEcC---CeEEEec
Q 031979          124 KGFVLTCVAYPTS---DCVIYTH  143 (149)
Q Consensus       124 ~g~~LaCq~~~~~---d~~I~~~  143 (149)
                      +++||+||.++..   +++|++|
T Consensus        82 ~~sRLaCQi~l~~~ldgl~V~vP  104 (104)
T d2bt6a1          82 DRSRLGCQICLTKAMDNMTVRVP  104 (104)
T ss_dssp             TTEEEGGGCBCCGGGTTEEEECC
T ss_pred             cCeEEeeeCEeeccCCCEEEecC
Confidence            8999999999975   5899887

>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase, N-terminal domain
species: Clostridium pasteurianum [TaxId: 1501]

Probab=99.05  E-value=1.2e-10  Score=81.73  Aligned_cols=65  Identities=25%  Similarity=0.548  Sum_probs=55.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHcCCCCCCCCC-------CcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEE
Q 031979           62 PNGEENEFDAPDDAYIIDSAEDTGMELPYSCR-------AGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYP  134 (149)
Q Consensus        62 ~~G~~~~~~v~~g~tLLea~~~~Gi~i~~~C~-------~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~  134 (149)
                      .||  +.+++++|+|||+|++++||.||+-|.       .|.|..|.|.+ +|                .+.+-+|.+.+
T Consensus         6 IdG--~~v~~~~G~til~aa~~~gi~IP~lC~~~~l~~~~G~Cr~C~Vev-~G----------------~~~v~AC~t~v   66 (126)
T d3c8ya2           6 ING--VQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEV-EG----------------TGLVTACDTLI   66 (126)
T ss_dssp             ETT--EEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEE-TT----------------TEEEEGGGCBC
T ss_pred             ECC--EEEEeCCCChHHHHHHHcCCccchhhhccCCCCCCccceeEEEEE-cc----------------CccccccccCC
Confidence            588  899999999999999999999999993       48999999987 33                12466999999


Q ss_pred             cCCeEEEecCC
Q 031979          135 TSDCVIYTHKE  145 (149)
Q Consensus       135 ~~d~~I~~~~~  145 (149)
                      ...|+|++..+
T Consensus        67 ~~GM~V~T~s~   77 (126)
T d3c8ya2          67 EDGMIINTNSD   77 (126)
T ss_dssp             CTTCEEESSCH
T ss_pred             CCCCEEEeCCH
Confidence            99999988654

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=98.57  E-value=1.1e-08  Score=73.04  Aligned_cols=60  Identities=10%  Similarity=0.154  Sum_probs=43.5

Q ss_pred             cccCCCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCCceeEEEEEcCCCCeEEEEcCCCchHHHHHHHcCCCCCC
Q 031979           12 FQAAPRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPY   90 (149)
Q Consensus        12 ~~~~~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~~~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~Gi~i~~   90 (149)
                      ++.......++|+|||.+ |+++.+.+++.|..            .+.+   +                        -..
T Consensus        82 ~~~~~~~~~~vy~CGP~~m~~~v~~~~~~~g~~------------~vsl---e------------------------~~m  122 (160)
T d1ep3b2          82 MNEIDFEVDALYTCGAPAMLKAVAKKYDQLERL------------YISM---E------------------------SRM  122 (160)
T ss_dssp             HHHCCSCCSEEEEESCHHHHHHHHHHTTTCSSE------------EEEC---C------------------------CCC
T ss_pred             HHhhccccceeeeeccchHHHHHHHHHHhcCCc------------eEEe---c------------------------ccc
Confidence            334455678999999999 69999998876632            1221   0                        013


Q ss_pred             CCCCcccCCcEEEEeeCccc
Q 031979           91 SCRAGACSTCAGQMVSGSVD  110 (149)
Q Consensus        91 ~C~~G~CGtC~v~v~~G~v~  110 (149)
                      .|+.|+||+|++++.+|...
T Consensus       123 ~Cg~GiCg~C~~~~~~g~~~  142 (160)
T d1ep3b2         123 ACGIGACYACVEHDKEDESH  142 (160)
T ss_dssp             SSSSSSSCTTEEEETTEEEE
T ss_pred             cCCCcccCcCcceecCCCCC
Confidence            69999999999999888654

>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit QorS, N-domain {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Quinoline 2-oxidoreductase small subunit QorS, N-domain
species: Pseudomonas putida [TaxId: 303]

Probab=98.56  E-value=7.3e-08  Score=62.37  Aligned_cols=53  Identities=19%  Similarity=0.483  Sum_probs=45.1

Q ss_pred             eeEEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeCc
Q 031979           54 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        54 ~~~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G~  108 (149)
                      +.+|+| ..||+.++++++++++||+++++. |+ ....+|+.|.||+|.|.+ .|.
T Consensus         3 ~~~i~~-~vNG~~~~~~~~~~~~Ll~~LR~~l~ltg~K~gC~~G~CGACtVlv-dG~   57 (81)
T d1t3qa2           3 LMRISA-TINGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILI-DGA   57 (81)
T ss_dssp             CEEEEE-EETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEE-TTE
T ss_pred             eEEEEE-EECCEEEEEecCCCCCHHHHHhhhhCCcccccCCCCcccCeeEEEE-CCC
Confidence            567888 489988899999999999999864 76 489999999999999964 553

>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Aldehyde oxidoreductase, N-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=98.51  E-value=1.1e-07  Score=61.27  Aligned_cols=52  Identities=21%  Similarity=0.474  Sum_probs=43.9

Q ss_pred             eEEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeCc
Q 031979           55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G~  108 (149)
                      .+++| ..||+.++++++++++||+.+++. |+ ....+|+.|.||.|.|.+ +|+
T Consensus         2 ~~~~~-~lNG~~~~~~v~~~~~Lld~LR~~lgltg~K~gC~~G~CGACtVlv-dG~   55 (80)
T d1vlba2           2 IQKVI-TVNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVIL-DGK   55 (80)
T ss_dssp             EEEEE-EETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE-TTE
T ss_pred             ceEEE-EECCEEEEEecCCCCCHHHHHhHhhCCcccccCcCcCCCCeeEEEE-CCc
Confidence            46677 478988889999999999999975 77 589999999999999864 553

>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=2.6e-07  Score=62.46  Aligned_cols=58  Identities=16%  Similarity=0.349  Sum_probs=43.1

Q ss_pred             eEEEEcCCCchHHHHHH----Hc--CCCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEc---C
Q 031979           66 ENEFDAPDDAYIIDSAE----DT--GMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPT---S  136 (149)
Q Consensus        66 ~~~~~v~~g~tLLea~~----~~--Gi~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~---~  136 (149)
                      +.+++++++.|+|++|.    ..  -+...++|+.|+||+|.+.| .|.                 .+|||.+...   .
T Consensus        25 ~y~v~~~~~~tvLd~L~~Ik~~~d~sLsfr~sCr~giCGsCam~I-NG~-----------------~~LAC~t~v~~~~~   86 (105)
T d1kf6b2          25 FYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NNV-----------------PKLACKTFLRDYTD   86 (105)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEE-TTE-----------------EEEGGGCBGGGCTT
T ss_pred             EEEEecCCCCcHHHHHHHHHHhcCCcceEEeccCCCCCCCCeEEE-CCc-----------------ccccceeEeeccCC
Confidence            35778889999999993    22  25679999999999999975 552                 4788887664   2


Q ss_pred             CeEEE
Q 031979          137 DCVIY  141 (149)
Q Consensus       137 d~~I~  141 (149)
                      .++|+
T Consensus        87 ~i~ie   91 (105)
T d1kf6b2          87 GMKVE   91 (105)
T ss_dssp             CEEEE
T ss_pred             CeEEE
Confidence            35554

>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Aldehyde oxidoreductase, N-terminal domain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=98.44  E-value=1.4e-07  Score=60.86  Aligned_cols=51  Identities=20%  Similarity=0.448  Sum_probs=43.4

Q ss_pred             eEEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeC
Q 031979           55 YKVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSG  107 (149)
Q Consensus        55 ~~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G  107 (149)
                      .+++|. .||+.++++++++++||+++++. |+ ....+|+.|.||.|.|.+ +|
T Consensus         2 ~~~~~~-vNG~~~~~~v~p~~~Ll~~LR~~~gltgtK~GC~~G~CGACtV~v-dG   54 (80)
T d1dgja2           2 ETKTLI-VNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVIL-DG   54 (80)
T ss_dssp             EEEECE-ETTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE-TT
T ss_pred             ceEEEE-ECCEEEEEEcCCCCCHHHHHhhhhCCceeccCCCCCCCCeeEEEE-CC
Confidence            456663 68988999999999999999975 77 588999999999999965 55

>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain {Thauera aromatica [TaxId: 59405]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain
species: Thauera aromatica [TaxId: 59405]

Probab=98.39  E-value=2.7e-07  Score=59.60  Aligned_cols=51  Identities=25%  Similarity=0.537  Sum_probs=42.9

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHc-CCC-CCCCCCCcccCCcEEEEeeCc
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDT-GME-LPYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi~-i~~~C~~G~CGtC~v~v~~G~  108 (149)
                      .|+| ..||+.+++.++++++||+++++. |+. ...+|+.|.||.|-|.| .|+
T Consensus         4 ~i~~-~lNG~~~~~~v~~~~~Ll~~LR~~lgltgtK~gC~~G~CGACTVlv-dG~   56 (81)
T d1rm6c2           4 ILRL-TLNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLV-DDR   56 (81)
T ss_dssp             EEEE-EETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEE-TTE
T ss_pred             eEEE-EECCEEEEEecCCCCCHHHHHHHhhCCcccccCCccccCCccEEeE-CCc
Confidence            5777 478987889999999999999875 774 89999999999999964 553

>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
species: Hydrogenophaga pseudoflava [TaxId: 47421]

Probab=98.36  E-value=4.6e-07  Score=58.20  Aligned_cols=51  Identities=16%  Similarity=0.411  Sum_probs=43.2

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeCc
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G~  108 (149)
                      .|+| ..||+.+++.++++++||+.+++. |+ ....+|+.|.||.|-|.+ +|.
T Consensus         3 ~i~~-~vNG~~~~~~v~~~~~Ll~~LR~~~gl~gtK~GC~~G~CGaCTVlv-dg~   55 (79)
T d1ffva2           3 IITV-NVNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDI-DGR   55 (79)
T ss_dssp             EEEE-EETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TTE
T ss_pred             EEEE-EECCEEEEEeCCCCCCHHHHHhhhcCCcccccCCccccccccEEec-CCc
Confidence            4667 478988999999999999999875 77 488999999999999954 554

>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
species: Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]

Probab=98.33  E-value=6e-07  Score=57.65  Aligned_cols=51  Identities=18%  Similarity=0.376  Sum_probs=43.4

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeCc
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G~  108 (149)
                      .|+| ..||+.++++++++++|++++++. |+ ....+|+.|.||.|-|. +.|.
T Consensus         3 ~i~~-~lNG~~~~~~v~p~~~Ll~~LR~~~~ltgtK~GC~~G~CGaCTVl-vdg~   55 (79)
T d1n62a2           3 HIEL-TINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVD-LDGM   55 (79)
T ss_dssp             EEEE-EETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEE-ETTE
T ss_pred             eEEE-EECCEEEEEecCCCCcHHHHHhhhcCCcccccCCccccccccEEE-eCCc
Confidence            5777 478988889999999999999865 87 59999999999999995 4564

>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein, N-terminal domain {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Wolinella succinogenes [TaxId: 844]

Probab=98.24  E-value=5.5e-07  Score=60.88  Aligned_cols=51  Identities=20%  Similarity=0.461  Sum_probs=39.3

Q ss_pred             EEEEcCCCchHHHHHHH----cC--CCCCCCCCCcccCCcEEEEeeCcccCCCCCCCChhhccCCeEEeeeeEEc
Q 031979           67 NEFDAPDDAYIIDSAED----TG--MELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPT  135 (149)
Q Consensus        67 ~~~~v~~g~tLLea~~~----~G--i~i~~~C~~G~CGtC~v~v~~G~v~~~~~~~L~~~~~~~g~~LaCq~~~~  135 (149)
                      .++++.++.|+|++|..    .+  +...++|+.|+||+|.++| .|.                 .+|||+++..
T Consensus        26 y~v~~~~~~tvld~L~~Ik~~~D~sl~fr~sCr~giCGsCam~I-NG~-----------------~~lAC~t~v~   82 (106)
T d2bs2b2          26 YKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMI-NGR-----------------PSLACRTLTK   82 (106)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEE-TTE-----------------EEEGGGCBGG
T ss_pred             EEecCCCCCcHHHHHHHHHHhcCCcEEEEeCcCCCCCCcceEEE-CCc-----------------cccceeeeee
Confidence            45667789999999832    22  6688999999999999975 563                 3789988764

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=3.9e-07  Score=63.07  Aligned_cols=40  Identities=10%  Similarity=0.055  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEcCCchH-HHHHHHHHHcCCCCCcccccCCce
Q 031979           15 APRSKKFSLVKSPASL-GSTRSVSKAFGLKCSSFKASAMAV   54 (149)
Q Consensus        15 ~~~~~~~~y~CGP~~m-~~v~~~~~~~g~~~~~f~~~~~~~   54 (149)
                      .+..+.++|+|||.+| +++++.|.++|++.++||+|...+
T Consensus        99 ~~~~~~~~~iCGp~~m~~~v~~~L~~~G~~~~~i~~E~F~~  139 (143)
T d1gvha3          99 FSDPTMQFYLCGPVGFMQFTAKQLVDLGVKQENIHYECFGP  139 (143)
T ss_dssp             CCCTTCEEEEESCHHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             ccccCcEEEEeCcHHHHHHHHHHHHHcCCCHHHEEEeccCC
Confidence            3445789999999995 999999999999999999886543

>d1jroa2 d.15.4.2 (A:1-84) Xanthine dehydrogenase chain A, N-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Xanthine dehydrogenase chain A, N-terminal domain
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=98.21  E-value=1.5e-06  Score=56.36  Aligned_cols=49  Identities=16%  Similarity=0.443  Sum_probs=41.8

Q ss_pred             EEEEEcCCCCeEEEEcC-CCchHHHHHHHcCC-CCCCCCCCcccCCcEEEEe
Q 031979           56 KVKLIGPNGEENEFDAP-DDAYIIDSAEDTGM-ELPYSCRAGACSTCAGQMV  105 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~-~g~tLLea~~~~Gi-~i~~~C~~G~CGtC~v~v~  105 (149)
                      +|+|. .||+.+++.+. ++++|++.+++.|+ ....+|+.|.||.|.|.|-
T Consensus         2 ~i~f~-vNG~~~~~~~~~~~~~Ll~~LR~~~ltgtK~GC~~G~CGACtVlvd   52 (84)
T d1jroa2           2 EIAFL-LNGETRRVRIEDPTQSLLELLRAEGLTGTKEGCNEGDCGACTVMIR   52 (84)
T ss_dssp             EEEEE-ETTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCSSSSSCTTEEEEE
T ss_pred             EEEEE-ECCEEEEEEcCCCCCcHHHHHHHCCCccCccCcCCcccceeEEEEE
Confidence            57774 78977778764 69999999999988 4999999999999999773

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=98.12  E-value=7.8e-07  Score=61.81  Aligned_cols=36  Identities=6%  Similarity=0.079  Sum_probs=31.5

Q ss_pred             CCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           16 PRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        16 ~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      +..+.+||+|||++ |+++++.|.++|+++++||+|.
T Consensus        98 ~~~~~~vyiCGp~~m~~~v~~~l~~~Gv~~~~i~~E~  134 (141)
T d1tvca2          98 SDANPDIYLCGPPGMIDAACELVRSRGIPGEQVFFEK  134 (141)
T ss_dssp             SSSSSEEEEESSHHHHHHHHHHHHHHCCCCSEEEECC
T ss_pred             ccccceeeccCCHHHHHHHHHHHHHcCCCHHHEEEEe
Confidence            34567899999999 5999999999999999998774

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=98.09  E-value=9.2e-07  Score=60.93  Aligned_cols=37  Identities=8%  Similarity=0.102  Sum_probs=32.5

Q ss_pred             CCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccCC
Q 031979           16 PRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASAM   52 (149)
Q Consensus        16 ~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~~   52 (149)
                      ...+.++|+|||.+ |+++++.|.++|++.++||.|.+
T Consensus        98 ~~~~~~vyiCGp~~m~~~v~~~L~~~G~~~~~i~~E~F  135 (142)
T d1cqxa3          98 LLPDADYYICGPIPFMRMQHDALKNLGIHEARIHYEVF  135 (142)
T ss_dssp             CCTTCEEEEESSHHHHHHHHHHHHHTTCCGGGEEECCC
T ss_pred             ccCCceEEEECChhHHHHHHHHHHHcCCCHHHEEEEec
Confidence            55678999999999 59999999999999999987753

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=98.07  E-value=5e-07  Score=62.17  Aligned_cols=36  Identities=14%  Similarity=0.141  Sum_probs=31.4

Q ss_pred             CCCCCeEEEcCCch-HHHHHHHHHHcCCCCCcccccC
Q 031979           16 PRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKASA   51 (149)
Q Consensus        16 ~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~~   51 (149)
                      +..+.+||+|||.+ |+++++.|.++|++.++||+|.
T Consensus        93 ~~~~~~vyiCGp~~m~~~v~~~L~~~Gv~~~~i~~E~  129 (133)
T d1krha2          93 NGGEVDVYLCGPVPMVEAVRSWLDTQGIQPANFLFEK  129 (133)
T ss_dssp             GGGCSEEEEEEEHHHHHHHHHHHHHHTCCCSEEEEEE
T ss_pred             ccccceEEEECCHHHHHHHHHHHHHcCCCHHHEEEEe
Confidence            34568899999999 5999999999999999998764

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=98.00  E-value=1.4e-06  Score=58.31  Aligned_cols=33  Identities=6%  Similarity=0.154  Sum_probs=28.0

Q ss_pred             CCCCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979           16 PRSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS   50 (149)
Q Consensus        16 ~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~   50 (149)
                      ..++.++|+|||.+ |+++++++  .||++++||+|
T Consensus        87 ~~~~~~~y~CGp~~mi~~v~~~~--~~~~~~~ih~E  120 (120)
T d2piaa2          87 SKPAQHVYCCGPQALMDTVRDMT--GHWPSGTVHFE  120 (120)
T ss_dssp             CCTTEEEEEESCHHHHHHHHHHT--TTSCTTCEEEE
T ss_pred             CCCcCEEEEeCCHHHHHHHHHHH--cCCCHHHeecC
Confidence            45678999999999 59999977  48999999976

>d1v97a2 d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Xanthine oxidase, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.96  E-value=4.8e-06  Score=54.54  Aligned_cols=51  Identities=18%  Similarity=0.402  Sum_probs=39.9

Q ss_pred             EEEEEcCCCCeEEE-EcCCCchHHHHHHHc-CC-CCCCCCCCcccCCcEEEEeeCc
Q 031979           56 KVKLIGPNGEENEF-DAPDDAYIIDSAEDT-GM-ELPYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        56 ~V~~~~~~G~~~~~-~v~~g~tLLea~~~~-Gi-~i~~~C~~G~CGtC~v~v~~G~  108 (149)
                      +|+|. .||+...+ .+++++|||+.+++. |+ ....+|+.|.||.|-|.+ .|.
T Consensus         3 ~i~F~-lNG~~~~~~~~~p~~tLl~~LR~~~~ltGtK~GC~~G~CGACTVlv-~~~   56 (90)
T d1v97a2           3 ELVFF-VNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVML-SKY   56 (90)
T ss_dssp             CEEEE-ETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEE-EEE
T ss_pred             eEEEE-ECCEEEEEccCCCCCCHHHHHHhhcCCCccccCcCCcccceeEEEE-ccc
Confidence            46774 78854444 378899999999876 87 499999999999999955 553

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=3.2e-06  Score=57.75  Aligned_cols=35  Identities=3%  Similarity=-0.044  Sum_probs=29.1

Q ss_pred             CCCCCeEEEcCCchH-HHHHHHH-HHcCCCCCccccc
Q 031979           16 PRSKKFSLVKSPASL-GSTRSVS-KAFGLKCSSFKAS   50 (149)
Q Consensus        16 ~~~~~~~y~CGP~~m-~~v~~~~-~~~g~~~~~f~~~   50 (149)
                      +..+.++|+|||++| +++.+.| +++|+++++||.+
T Consensus        94 ~~~~~~~yvCGp~~m~~~~~~~L~~~~G~~~~~i~~E  130 (135)
T d1qfja2          94 TLAEHDIYIAGRFEMAKIARDLFCSERNAREDRLFGD  130 (135)
T ss_dssp             CCTTCEEEEESCHHHHHHHHHHHHHHSCCCGGGEECT
T ss_pred             CcccCceEeeCCHHHHHHHHHHHHHHcCCCHHHEEEE
Confidence            346689999999995 8888876 7899999998765

>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Succinate dehydogenase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=2.1e-05  Score=52.77  Aligned_cols=33  Identities=24%  Similarity=0.549  Sum_probs=26.1

Q ss_pred             chHHHHHHH---c--CCCCCCCCCCcccCCcEEEEeeCc
Q 031979           75 AYIIDSAED---T--GMELPYSCRAGACSTCAGQMVSGS  108 (149)
Q Consensus        75 ~tLLea~~~---~--Gi~i~~~C~~G~CGtC~v~v~~G~  108 (149)
                      .++|+++.+   +  -+...++|+.|+||+|.++| .|.
T Consensus        33 ~~vl~~L~~i~e~D~sLsfr~sCr~giCGsCam~I-NG~   70 (106)
T d1nekb2          33 MMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNM-NGK   70 (106)
T ss_dssp             CBHHHHHHHHHHHCTTCCCCCCSSSSCSCTTEEEE-TTE
T ss_pred             HHHHHHHHHHhccCCCEEEEcCCCCCCCCcceEEE-cCc
Confidence            589998765   2  35688999999999999975 663

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=1.6e-05  Score=55.15  Aligned_cols=32  Identities=9%  Similarity=0.099  Sum_probs=26.8

Q ss_pred             CCCCeEEEcCCchH-H-HHHHHHHHcCCCCCccc
Q 031979           17 RSKKFSLVKSPASL-G-STRSVSKAFGLKCSSFK   48 (149)
Q Consensus        17 ~~~~~~y~CGP~~m-~-~v~~~~~~~g~~~~~f~   48 (149)
                      ..+.++|+|||.+| + ++++.|++.|++.++++
T Consensus       112 ~~~~~vyiCGP~~m~~~~~~~~L~~~G~~~e~i~  145 (147)
T d1umka2         112 EEEPLVLMCGPPPMIQYACLPNLDHVGHPTERCF  145 (147)
T ss_dssp             GGCCEEEEESCHHHHHHTTHHHHHHHTCCGGGEE
T ss_pred             cCCcEEEEeCCHHHHHHHHHHHHHHcCCCHHHEE
Confidence            45678999999995 6 47899999999999864

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

Probab=97.44  E-value=1.4e-05  Score=54.52  Aligned_cols=32  Identities=6%  Similarity=0.105  Sum_probs=26.5

Q ss_pred             CCCCCeEEEcCCchH-H-HHHHHHHHcCCCCCcc
Q 031979           16 PRSKKFSLVKSPASL-G-STRSVSKAFGLKCSSF   47 (149)
Q Consensus        16 ~~~~~~~y~CGP~~m-~-~v~~~~~~~g~~~~~f   47 (149)
                      +..+..+|+|||++| + ++++.|+++|++.+++
T Consensus       109 ~~~~~~vyiCGp~~m~~~av~~~L~~~G~~~~~i  142 (146)
T d2cnda2         109 GGDDTLALACGPPPMIQFAISPNLEKMKYDMANS  142 (146)
T ss_dssp             CSSSEEEEEECCHHHHHTTTHHHHHTTTCCHHHH
T ss_pred             CCCCcEEEEECCHHHHHHHHHHHHHHcCCCHHHE
Confidence            345678999999995 7 5789999999998875

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.43  E-value=5.2e-05  Score=52.35  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=28.9

Q ss_pred             CCCCeEEEcCCch-HHHHHHHHHHcCCCCCccccc
Q 031979           17 RSKKFSLVKSPAS-LGSTRSVSKAFGLKCSSFKAS   50 (149)
Q Consensus        17 ~~~~~~y~CGP~~-m~~v~~~~~~~g~~~~~f~~~   50 (149)
                      +.+.++|+|||.+ |++|++.|.++|++.++.+-+
T Consensus       111 ~~~~~~yiCGp~~m~~~v~~~L~~~G~~~~~~~~e  145 (158)
T d1a8pa2         111 PQDDRAMICGSPSMLDESCEVLDGFGLKISPRMGE  145 (158)
T ss_dssp             TTTEEEEEEECHHHHHHHHHHHHHTTCCBCSSTTS
T ss_pred             cccceEEEECCHHHHHHHHHHHHHcCCCccCCcCC
Confidence            4568899999999 599999999999998875544

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=7.9e-05  Score=51.10  Aligned_cols=30  Identities=7%  Similarity=0.091  Sum_probs=23.1

Q ss_pred             CCCCCeEEEcCCchH-HHHHHHHHH-cCCCCC
Q 031979           16 PRSKKFSLVKSPASL-GSTRSVSKA-FGLKCS   45 (149)
Q Consensus        16 ~~~~~~~y~CGP~~m-~~v~~~~~~-~g~~~~   45 (149)
                      .+.+.+||+|||.+| +++++.|.+ .|+...
T Consensus       103 ~~~~~~vyiCGp~~m~~~v~~~L~e~~g~~e~  134 (148)
T d1fdra2         103 NKETSHVMLCGNPQMVRDTQQLLKETRQMTKH  134 (148)
T ss_dssp             CTTTEEEEEEECHHHHHHHHHHHHHHHCCCBC
T ss_pred             ccccceEEEECCHHHHHHHHHHHHHhcCCCcc
Confidence            345667999999995 999999865 577654

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=96.91  E-value=8.4e-05  Score=51.29  Aligned_cols=31  Identities=13%  Similarity=0.145  Sum_probs=26.2

Q ss_pred             CCCCCeEEEcCCchH-HHHHHHHHHcCCCCCc
Q 031979           16 PRSKKFSLVKSPASL-GSTRSVSKAFGLKCSS   46 (149)
Q Consensus        16 ~~~~~~~y~CGP~~m-~~v~~~~~~~g~~~~~   46 (149)
                      ...+..+|+|||++| ++|++.|.+.|++.+.
T Consensus       111 ~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~  142 (162)
T d2bmwa2         111 KNQKTHTYICGPPPMEEGIDAALSAAAAKEGV  142 (162)
T ss_dssp             TSTTEEEEEEECTTHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCCEEEEECCHHHHHHHHHHHHHhhcccCc
Confidence            456778999999995 9999999999887665

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=96.53  E-value=0.00036  Score=48.07  Aligned_cols=29  Identities=0%  Similarity=-0.002  Sum_probs=23.7

Q ss_pred             CCCCCeEEEcCCch-HHHHHHHHHHcCCCC
Q 031979           16 PRSKKFSLVKSPAS-LGSTRSVSKAFGLKC   44 (149)
Q Consensus        16 ~~~~~~~y~CGP~~-m~~v~~~~~~~g~~~   44 (149)
                      ...+..+|+|||.+ |++|++.+.+.|...
T Consensus       109 ~~~~~~vyiCGp~~m~~~v~~~l~~~~~~~  138 (160)
T d1fnda2         109 KKDNTYVYMCGLKGMEKGIDDIMVSLAAAE  138 (160)
T ss_dssp             TSTTEEEEEEECHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence            45678899999999 599999998876554

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=96.22  E-value=0.00087  Score=45.79  Aligned_cols=23  Identities=4%  Similarity=-0.052  Sum_probs=18.7

Q ss_pred             CCCeEEEcCCch-HHHHHHHHHHc
Q 031979           18 SKKFSLVKSPAS-LGSTRSVSKAF   40 (149)
Q Consensus        18 ~~~~~y~CGP~~-m~~v~~~~~~~   40 (149)
                      .++.+|+|||++ |++|++.|.+.
T Consensus       105 ~~~~~yvCGp~~mm~~v~~~L~~~  128 (154)
T d1jb9a2         105 GGAHIYFCGLKGMMPGIQDTLKKV  128 (154)
T ss_dssp             TTCEEEEEECGGGHHHHHHHHHHH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHH
Confidence            467899999999 68888877655

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.00086  Score=45.86  Aligned_cols=34  Identities=6%  Similarity=-0.015  Sum_probs=26.8

Q ss_pred             CCCCeEEEcCCch-H-HHHHHHHHHcCCCCCccccc
Q 031979           17 RSKKFSLVKSPAS-L-GSTRSVSKAFGLKCSSFKAS   50 (149)
Q Consensus        17 ~~~~~~y~CGP~~-m-~~v~~~~~~~g~~~~~f~~~   50 (149)
                      ..+.++|+|||+. | ++|++.|.+.|.+...++.+
T Consensus        98 ~~~~~~yiCG~p~~~~~~v~~~L~~~~~~~~~~~~e  133 (153)
T d1ddga2          98 NDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTE  133 (153)
T ss_dssp             HTTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCHH
T ss_pred             ccCCEEEEECCCcchHHHHHHHHHHHHHHhcCCCHH
Confidence            3567899999776 5 99999999988877766544

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.84  E-value=0.0023  Score=44.40  Aligned_cols=29  Identities=3%  Similarity=-0.066  Sum_probs=22.7

Q ss_pred             CCCCCeEEEcCCchH-HHHHHHHHHcCCCC
Q 031979           16 PRSKKFSLVKSPASL-GSTRSVSKAFGLKC   44 (149)
Q Consensus        16 ~~~~~~~y~CGP~~m-~~v~~~~~~~g~~~   44 (149)
                      ...+.++|+|||.+| ++|++.|.+.+...
T Consensus       108 ~~~~~~~yiCGp~~M~~~v~~~L~~i~~~~  137 (165)
T d1f20a2         108 KEQGGHIYVCGDVTMAADVLKAIQRIMTQQ  137 (165)
T ss_dssp             HTSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEECCcchHHHHHHHHHHHHHHh
Confidence            346789999999995 99999997765433

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.84  E-value=0.0062  Score=42.55  Aligned_cols=23  Identities=9%  Similarity=0.027  Sum_probs=17.6

Q ss_pred             CCCCeEEEcCCch-H-HHHHHHHHH
Q 031979           17 RSKKFSLVKSPAS-L-GSTRSVSKA   39 (149)
Q Consensus        17 ~~~~~~y~CGP~~-m-~~v~~~~~~   39 (149)
                      ..+.++|+|||.. | ++|++.+.+
T Consensus       104 ~~~~~vYvCG~~~~M~~~V~~~l~~  128 (160)
T d1ja1a3         104 EGGAHIYVAGDARNMAKDVQNTFYD  128 (160)
T ss_dssp             TSCCEEEEEEETTTHHHHHHHHHHH
T ss_pred             cCCcEEEEeCCCccchHHHHHHHHH
Confidence            4578999999874 7 788876644

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.48  E-value=0.41  Score=29.30  Aligned_cols=28  Identities=25%  Similarity=0.521  Sum_probs=23.2

Q ss_pred             EEEEcCCCCeEEEEcCCCchHHHHHHHc
Q 031979           57 VKLIGPNGEENEFDAPDDAYIIDSAEDT   84 (149)
Q Consensus        57 V~~~~~~G~~~~~~v~~g~tLLea~~~~   84 (149)
                      |+++.++|...+|.+.++.+|++.++++
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~ea   30 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDT   30 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHH
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHH
Confidence            5566789988889999999999988763

>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: c-Raf1 RBD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.08  E-value=0.83  Score=27.84  Aligned_cols=41  Identities=15%  Similarity=0.285  Sum_probs=29.1

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHH----cCCCCCCCCCCcccCCcEEEEe
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAED----TGMELPYSCRAGACSTCAGQMV  105 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~----~Gi~i~~~C~~G~CGtC~v~v~  105 (149)
                      +|+++-+||+.-.+++.+|+||-+++.+    .|+.         .-.|.|.+.
T Consensus         3 ~iRv~LPngq~T~V~vrpG~tird~L~k~l~kRgl~---------~~~c~V~~~   47 (77)
T d1c1yb_           3 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQ---------PECCAVFRL   47 (77)
T ss_dssp             EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCC---------GGGEEEEEE
T ss_pred             eEEEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCC---------HHHEEEEEe
Confidence            3444448997777999999999888755    4554         345777665

>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: A-Raf proto-oncogene serine/threonine-protein kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.31  E-value=0.86  Score=27.50  Aligned_cols=43  Identities=23%  Similarity=0.376  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCeEEEEcCCCchHHHHHHH----cCCCCCCCCCCcccCCcEEEEe-eC
Q 031979           56 KVKLIGPNGEENEFDAPDDAYIIDSAED----TGMELPYSCRAGACSTCAGQMV-SG  107 (149)
Q Consensus        56 ~V~~~~~~G~~~~~~v~~g~tLLea~~~----~Gi~i~~~C~~G~CGtC~v~v~-~G  107 (149)
                      +|+++-+||+.-.+++.+|+||-+++.+    .|+.         ...|.|..+ .|
T Consensus         2 ~iRv~LPngq~T~V~vrpG~tir~~L~k~l~kRgl~---------~~~~~V~~~~~g   49 (73)
T d1wxma1           2 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLN---------QDCCVVYRLIKG   49 (73)
T ss_dssp             EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCC---------SSSEEEEEESSS
T ss_pred             eEEEEcCCCCeEEEEecCCCCHHHHHHHHHHHcCCC---------HHHEEEEEecCC
Confidence            3455558998778999999998877654    4554         335778765 45