Citrus Sinensis ID: 031983

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MGQVQSEAIDQTEGEQSSPSSPDSSQRAASIESLIAEAAAYGDDENESLDEKAQKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILEEDEVKNEEEPPPEYKIIPPVWSKEPRTPKSKL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHccccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccEcccccccccccccccHHHHHHHHHHEEEccccccccHHHHHHHHHHHHHHHcHHHHHHHHccHHHccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgqvqseaidqtegeqsspsspdssqRAASIESLIAEAAaygddeneslDEKAQKAlecpciadlrsgpcgaqFSEAFLCFLkstseekgsdcvhpFVALQncikanpsafskdileedevkneeepppeykiippvwskeprtpkskl
Flexible Loop (DISEMBL)
mgqvqseaidqtegeqsspsspdssQRAASIESLIAEAAAYGDDENESLDEKAQKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILEEdevkneeepppeykiippvwskeprtpkskl
Low Complexity Region (SEG)
MGQVQSEAIDQTEGEqsspsspdssqraasiesliaeaaaYGDDENESLDEKAQKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILeedevkneeepppeykiippvWSKEPRTPKSKL
Disordered region (IsUnstruct)
*******************************************************ALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKAN******************************************
Disordered Region (DISOPRED)
***************************************************KAQKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSA***************************************
Disordered Region (DISEMBL)
****************************ASIESLIAEAAAY***********AQKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILEE**********PEYKIIPPVWSK*********
Disordered Region (DISPRO)
***********************************************SLDEKAQKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILE********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGQVQSEAIDQTEGEQSSPSSPDSSQRAASIESLIAEAAAYGDDENESLDEKAQKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILEEDEVKNEEEPPPEYKIIPPVWSKEPRTPKSKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
Q4P8D2	247	Mitochondrial intermembra	N/A	no	0.436	0.263	0.469	1e-12
Q7S3S2	298	Mitochondrial intermembra	N/A	no	0.644	0.322	0.339	3e-12
Q6BSK8	249	Mitochondrial intermembra	yes	no	0.422	0.253	0.380	1e-11
P0CM69	242	Mitochondrial intermembra	N/A	no	0.812	0.5	0.323	2e-11
Q757A5	266	Mitochondrial intermembra	yes	no	0.489	0.274	0.369	3e-11
Q6CSA1	406	Mitochondrial intermembra	yes	no	0.449	0.165	0.388	5e-11
P36046	403	Mitochondrial intermembra	yes	no	0.489	0.181	0.368	6e-11
P0C1D2	283	Mitochondrial intermembra	yes	no	0.389	0.204	0.413	6e-11
Q8N4Q1	142	Mitochondrial intermembra	no	no	0.355	0.373	0.528	7e-11
Q8VEA4	139	Mitochondrial intermembra	yes	no	0.375	0.402	0.482	8e-11

>sp|Q4P8D2|MIA40_USTMA Mitochondrial intermembrane space import and assembly protein 40 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=MIA40 PE=3 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 58  ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILE 117
           +CPC+  +  GPCG QF  AF CF+ S +E KG DCV  F A+Q+C + +P  + KD +E
Sbjct: 148 DCPCLGGMAHGPCGEQFKLAFSCFVYSEAEPKGIDCVDKFKAMQDCFREHPDVY-KDEIE 206

Query: 118 EDEVKN 123
           +DE  N
Sbjct: 207 DDEAAN 212

Required for the import and folding of small cysteine-containing proteins (small Tim) in the mitochondrial intermembrane space (IMS). Forms a redox cycle with ERV1 that involves a disulfide relay system. Precursor proteins to be imported into the IMS are translocated in their reduced form into the mitochondria. The oxidized form of MIA40 forms a transient intermolecular disulfide bridge with the reduced precursor protein, resulting in oxidation of the precursor protein that now contains an intramolecular disulfide bond and is able to undergo folding in the IMS.
Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|Q7S3S2|MIA40_NEUCR Mitochondrial intermembrane space import and assembly protein 40 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mia-40 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 7/103 (6%)

Query: 23  DSSQRAASIESLIAEAAAYGDDENESLD-------EKAQKALECPCIADLRSGPCGAQFS 75
           DS  R+ S E +I EA A  +   E  D       E  +   +CPC+  +  GPCG +F 
Sbjct: 148 DSKPRSESTEGVIPEAGASPEALQEEADAQGAFNPETGEINWDCPCLGGMAHGPCGEEFK 207

Query: 76  EAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILEE 118
            AF CF+ ST E KG DC+  F  +Q+C +  P  +  ++ ++
Sbjct: 208 AAFSCFVYSTEEPKGMDCIEKFSHMQDCFRKYPEVYGAELADD 250

Required for the import and folding of small cysteine-containing proteins (small Tim) in the mitochondrial intermembrane space (IMS). Forms a redox cycle with ERV1 that involves a disulfide relay system. Precursor proteins to be imported into the IMS are translocated in their reduced form into the mitochondria. The oxidized form of MIA40 forms a transient intermolecular disulfide bridge with the reduced precursor protein, resulting in oxidation of the precursor protein that now contains an intramolecular disulfide bond and is able to undergo folding in the IMS.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q6BSK8|MIA40_DEBHA Mitochondrial intermembrane space import and assembly protein 40 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=MIA40 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 43/63 (68%)

Query: 58  ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILE 117
           +CPC+  +  GPCG +F EAF CF+ S SE KG +C+  F +++NC + +P  + +++ +
Sbjct: 145 DCPCLGGMAHGPCGEEFKEAFACFIYSESEPKGIECIKKFESMRNCFREHPEHYKEELYD 204

Query: 118 EDE 120
           ++E
Sbjct: 205 DEE 207

Required for the import and folding of small cysteine-containing proteins (small Tim) in the mitochondrial intermembrane space (IMS). Forms a redox cycle with ERV1 that involves a disulfide relay system. Precursor proteins to be imported into the IMS are translocated in their reduced form into the mitochondria. The oxidized form of MIA40 forms a transient intermolecular disulfide bridge with the reduced precursor protein, resulting in oxidation of the precursor protein that now contains an intramolecular disulfide bond and is able to undergo folding in the IMS.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|P0CM69|MIA40_CRYNB Mitochondrial intermembrane space import and assembly protein 40 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=MIA40 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 12/133 (9%)

Query: 10  DQTEGEQSSP---SSPDSSQRAASIESLIAE---AAAYGDDENESLDEKAQKALECPCIA 63
           D+  GE + P   +S DS ++AA   + I E   A A    +     E  +   +CPC+ 
Sbjct: 89  DEFSGESTKPEASTSSDSVEKAADDAAQILEEKEAEASEPSQGAYNPETGEINWDCPCLG 148

Query: 64  DLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSK------DILE 117
            + +GPCG QF  AF CF+ S +E KG DCV  F  +Q+C + +P  + +       ++ 
Sbjct: 149 GMATGPCGEQFKAAFSCFVYSEAEPKGVDCVELFKVMQDCFREHPEIYGEVDTLGLVLMF 208

Query: 118 EDEVKNEEEPPPE 130
             E+ ++E PP E
Sbjct: 209 YAEIDDDEAPPQE 221

Required for the import and folding of small cysteine-containing proteins (small Tim) in the mitochondrial intermembrane space (IMS). Forms a redox cycle with ERV1 that involves a disulfide relay system. Precursor proteins to be imported into the IMS are translocated in their reduced form into the mitochondria. The oxidized form of MIA40 forms a transient intermolecular disulfide bridge with the reduced precursor protein, resulting in oxidation of the precursor protein that now contains an intramolecular disulfide bond and is able to undergo folding in the IMS.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q757A5|MIA40_ASHGO Mitochondrial intermembrane space import and assembly protein 40 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MIA40 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 43/73 (58%)

Query: 58  ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILE 117
           +CPC+  +  GPCG +F  AF CF+ S +E KG DCV  F  +Q+C + +P  +++ +  
Sbjct: 186 DCPCLGGMAHGPCGEEFKAAFACFVYSEAEPKGIDCVEKFQVMQDCFRQHPEHYAEQLES 245

Query: 118 EDEVKNEEEPPPE 130
           E++   E E   E
Sbjct: 246 EEQAVRETEAAAE 258

Required for the import and folding of small cysteine-containing proteins (small Tim) in the mitochondrial intermembrane space (IMS). Forms a redox cycle with ERV1 that involves a disulfide relay system. Precursor proteins to be imported into the IMS are translocated in their reduced form into the mitochondria. The oxidized form of MIA40 forms a transient intermolecular disulfide bridge with the reduced precursor protein, resulting in oxidation of the precursor protein that now contains an intramolecular disulfide bond and is able to undergo folding in the IMS.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q6CSA1|MIA40_KLULA Mitochondrial intermembrane space import and assembly protein 40 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=MIA40 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%)

Query: 58  ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILE 117
           +CPC+  +  GPCG +F  AF CF+ S ++ KG +CV  F  +QNC +  P  +++ I +
Sbjct: 281 DCPCLGGMAYGPCGEEFKSAFSCFVYSEADPKGINCVEKFSTMQNCFRKYPDYYAEQIKD 340

Query: 118 EDEVKNE 124
           E+E   E
Sbjct: 341 EEEASAE 347

Required for the import and folding of small cysteine-containing proteins (small Tim) in the mitochondrial intermembrane space (IMS). Forms a redox cycle with ERV1 that involves a disulfide relay system. Precursor proteins to be imported into the IMS are translocated in their reduced form into the mitochondria. The oxidized form of MIA40 forms a transient intermolecular disulfide bridge with the reduced precursor protein, resulting in oxidation of the precursor protein that now contains an intramolecular disulfide bond and is able to undergo folding in the IMS.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|P36046|MIA40_YEAST Mitochondrial intermembrane space import and assembly protein 40 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MIA40 PE=1 SV=2

 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 58  ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILE 117
           +CPC+  +  GPCG +F  AF CF+ S +E KG DCV  F  +Q+C +  P  +++ +  
Sbjct: 295 DCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLK- 353

Query: 118 EDEVKNEEEPPPEYKI 133
             E  ++EEP  + K+
Sbjct: 354 --ETSDDEEPQDKVKV 367

Required for the import and folding of small cysteine-containing proteins (small Tim) in the mitochondrial intermembrane space (IMS). Forms a redox cycle with ERV1 that involves a disulfide relay system. Precursor proteins to be imported into the IMS are translocated in their reduced form into the mitochondria. The oxidized form of MIA40 forms a transient intermolecular disulfide bridge with the reduced precursor protein, resulting in oxidation of the precursor protein that now contains an intramolecular disulfide bond and is able to undergo folding in the IMS. Reduced MIA40 is reoxidized by FAD-linked sulfhydryl oxidase ERV1.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P0C1D2|MIA40_EMENI Mitochondrial intermembrane space import and assembly protein 40 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=mia40 PE=3 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query: 58  ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDI 115
           +CPC+  +  GPCG +F  AF CF+ S  E KG DC+  F A+Q+C +A+P  +  ++
Sbjct: 151 DCPCLGGMAYGPCGEEFRAAFSCFVYSEEEPKGMDCIDKFKAMQDCFRAHPDVYGAEL 208

Required for the import and folding of small cysteine-containing proteins (small Tim) in the mitochondrial intermembrane space (IMS). Forms a redox cycle with ERV1 that involves a disulfide relay system. Precursor proteins to be imported into the IMS are translocated in their reduced form into the mitochondria. The oxidized form of MIA40 forms a transient intermolecular disulfide bridge with the reduced precursor protein, resulting in oxidation of the precursor protein that now contains an intramolecular disulfide bond and is able to undergo folding in the IMS.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q8N4Q1|MIA40_HUMAN Mitochondrial intermembrane space import and assembly protein 40 OS=Homo sapiens GN=CHCHD4 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 34/53 (64%)

Query: 59  CPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAF 111
           CPC+  + SGPCG QF  AF CF  ST E KGSDCV  F A+Q C++  P  +
Sbjct: 53  CPCLGGMASGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLY 105

Required for the import and folding of small cysteine-containing proteins (small Tim) in the mitochondrial intermembrane space (IMS). Probably acts by forming a redox cycle with GFER/ERV1 that involves a disulfide relay system. Precursor proteins to be imported into the IMS are translocated in their reduced form into the mitochondria. The oxidized form of MIA40 forms a transient intermolecular disulfide bridge with the reduced precursor protein, resulting in oxidation of the precursor protein that now contains an intramolecular disulfide bond and is able to undergo folding in the IMS.

Homo sapiens (taxid: 9606)

>sp|Q8VEA4|MIA40_MOUSE Mitochondrial intermembrane space import and assembly protein 40 OS=Mus musculus GN=Chchd4 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%)

Query: 59  CPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKD 114
           CPC+  + SGPCG QF  AF CF  ST + KGSDC+  F A+Q C++  P  + +D
Sbjct: 53  CPCLGGMASGPCGEQFKSAFSCFHYSTEDIKGSDCIDQFRAMQECMQKYPDLYPQD 108

Required for the import and folding of small cysteine-containing proteins (small Tim) in the mitochondrial intermembrane space (IMS). Probably acts by forming a redox cycle with GFER/ERV1 that involves a disulfide relay system. Precursor proteins to be imported into the IMS are translocated in their reduced form into the mitochondria. The oxidized form of MIA40 forms a transient intermolecular disulfide bridge with the reduced precursor protein, resulting in oxidation of the precursor protein that now contains an intramolecular disulfide bond and is able to undergo folding in the IMS.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
225463791	141	PREDICTED: mitochondrial intermembrane s	0.939	0.992	0.706	8e-51
224113229	145	predicted protein [Populus trichocarpa]	0.973	1.0	0.731	6e-49
255544175	135	Intermembrane space import and assembly	0.879	0.970	0.711	1e-45
356519778	145	PREDICTED: mitochondrial intermembrane s	0.953	0.979	0.657	7e-45
388499636	142	unknown [Lotus japonicus]	0.953	1.0	0.644	1e-44
357514007	150	Mitochondrial intermembrane space import	0.771	0.766	0.758	1e-42
388496122	150	unknown [Medicago truncatula]	0.771	0.766	0.75	3e-42
356560164	136	PREDICTED: mitochondrial intermembrane s	0.885	0.970	0.633	1e-40
449508096	159	PREDICTED: mitochondrial intermembrane s	0.805	0.754	0.671	2e-39
449464958	159	PREDICTED: mitochondrial intermembrane s	0.805	0.754	0.656	2e-38

>gi|225463791|ref|XP_002269925.1| PREDICTED: mitochondrial intermembrane space import and assembly protein 40 [Vitis vinifera] gi|147853097|emb|CAN78563.1| hypothetical protein VITISV_010402 [Vitis vinifera] gi|297742718|emb|CBI35352.3| unnamed protein product [Vitis vinifera]

 Score =  204 bits (520), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 106/150 (70%), Positives = 120/150 (80%), Gaps = 10/150 (6%)

Query: 1   MGQVQSEAIDQTEGEQSSPSSPDSSQRAASIESLIAEAAAYGDDENESLDEKAQKALECP 60
           MGQV+S         QS PS         S+++LIAEAAA+GDDENESLD KAQKALECP
Sbjct: 1   MGQVESNQSSAPNNSQSRPSD--------SLDALIAEAAAFGDDENESLDAKAQKALECP 52

Query: 61  CIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDIL-EED 119
           CIA LRSGPCG QFSEAF+CFLKS++EEKGSDCVHPFVALQNCIKANP+AFSKDIL ++D
Sbjct: 53  CIAHLRSGPCGTQFSEAFVCFLKSSAEEKGSDCVHPFVALQNCIKANPNAFSKDILDDDD 112

Query: 120 EVKNEEEPPPEYKIIPPVWSKEPRTPKSKL 149
           EVK EEEP  EYKIIPP+W+ E + PK KL
Sbjct: 113 EVKKEEEPTQEYKIIPPIWAAE-KGPKQKL 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113229|ref|XP_002316429.1| predicted protein [Populus trichocarpa] gi|118481972|gb|ABK92917.1| unknown [Populus trichocarpa] gi|222865469|gb|EEF02600.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (504), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 109/149 (73%), Positives = 121/149 (81%), Gaps = 4/149 (2%)

Query: 1   MGQVQSEAIDQTEGEQSSPSSPDSSQRAASIESLIAEAAAYGDDENESLDEKAQKALECP 60
           MGQ QSE       +Q  P    S     S+ESL+AEA AYG+DENESL+ KAQKALECP
Sbjct: 1   MGQAQSEVAPSDTADQMEPHFSSS----PSMESLLAEAVAYGNDENESLEAKAQKALECP 56

Query: 61  CIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILEEDE 120
           CIADLR+GPCG QFSE+FLCFLKSTSEEKGSDCVHPFVALQNCIKANP+AFSKDILEE E
Sbjct: 57  CIADLRNGPCGVQFSESFLCFLKSTSEEKGSDCVHPFVALQNCIKANPNAFSKDILEEAE 116

Query: 121 VKNEEEPPPEYKIIPPVWSKEPRTPKSKL 149
            K EEEP  EYKIIPP+WS+E ++PKSKL
Sbjct: 117 EKKEEEPAQEYKIIPPIWSRESQSPKSKL 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544175|ref|XP_002513150.1| Intermembrane space import and assembly protein 40, mitochondrial precursor, putative [Ricinus communis] gi|223548161|gb|EEF49653.1| Intermembrane space import and assembly protein 40, mitochondrial precursor, putative [Ricinus communis]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 101/142 (71%), Positives = 114/142 (80%), Gaps = 11/142 (7%)

Query: 1   MGQVQSE--AIDQTEGEQSSPSSPDSSQRAASIESLIAEAAAYGDDENESLDEKAQKALE 58
           MGQ QSE  A+DQT+  QSSP        A S+ESLIAEAAAYG+DENESLD KAQKALE
Sbjct: 1   MGQAQSEVAAVDQTQNHQSSP--------ATSVESLIAEAAAYGNDENESLDAKAQKALE 52

Query: 59  CPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILEE 118
           CPCIADLR G CG QFSEAF+CFLKST+EEKGSDCVHPFVALQ+C+KANP AFS DILE+
Sbjct: 53  CPCIADLRKGSCGIQFSEAFVCFLKSTAEEKGSDCVHPFVALQDCLKANPEAFSNDILEQ 112

Query: 119 DEVKNEEEPPPEYKIIPPVWSK 140
            EV+ EE    +YK+ PP WS+
Sbjct: 113 -EVEKEEVEAKDYKMFPPAWSQ 133

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519778|ref|XP_003528546.1| PREDICTED: mitochondrial intermembrane space import and assembly protein 40-like isoform 1 [Glycine max] gi|356519780|ref|XP_003528547.1| PREDICTED: mitochondrial intermembrane space import and assembly protein 40-like isoform 2 [Glycine max]

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 100/152 (65%), Positives = 120/152 (78%), Gaps = 10/152 (6%)

Query: 1   MGQVQS-EAIDQTEGEQSSPSSPDSSQRAASIESLIAEAAAYGDDENESLDEKAQKALEC 59
           MGQ +S EA+ +T+   +  S+P       S+ES++AEAA YG    ES++E AQKALEC
Sbjct: 1   MGQTESAEAVTETQTTTNDTSNP------ISLESVLAEAAEYGSQHTESVEEMAQKALEC 54

Query: 60  PCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDIL--E 117
           PCIADLR+G CG+QFSEAFLCFLKSTSEEKGSDCVHPFVALQ+CIKANP AFSKDIL   
Sbjct: 55  PCIADLRTGSCGSQFSEAFLCFLKSTSEEKGSDCVHPFVALQSCIKANPDAFSKDILGGA 114

Query: 118 EDEVKNEEEPPPEYKIIPPVWSKEPRTPKSKL 149
           EDE K E EP  EYKI+PP WS++P++PKS+L
Sbjct: 115 EDESK-ELEPVQEYKILPPKWSRKPQSPKSRL 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499636|gb|AFK37884.1| unknown [Lotus japonicus]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/149 (64%), Positives = 117/149 (78%), Gaps = 7/149 (4%)

Query: 1   MGQVQSEAIDQTEGEQSSPSSPDSSQRAASIESLIAEAAAYGDDENESLDEKAQKALECP 60
           MGQ +S  I      Q++P++  +S   AS+ES++AEAAAYG+ + ES++  AQKAL+CP
Sbjct: 1   MGQAESAEIPT----QTTPTT--NSSHPASLESVLAEAAAYGNQDTESVEAMAQKALQCP 54

Query: 61  CIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILEEDE 120
           CIADLR+GPCG+QFSEAFLCFLKS SEEKGSDCV PFVALQ+CIKANP AFSKDIL EDE
Sbjct: 55  CIADLRTGPCGSQFSEAFLCFLKSNSEEKGSDCVSPFVALQSCIKANPDAFSKDILGEDE 114

Query: 121 VKNEEEPPPEYKIIPPVWSKEPRTPKSKL 149
              E EP  +YKI+PP WSKE ++  SKL
Sbjct: 115 -STESEPVQDYKILPPNWSKESQSSVSKL 142

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514007|ref|XP_003627292.1| Mitochondrial intermembrane space import and assembly protein [Medicago truncatula] gi|66947630|emb|CAJ00011.1| coiled-coil-helix-coiled-coil-helix domain containing protein [Medicago truncatula] gi|355521314|gb|AET01768.1| Mitochondrial intermembrane space import and assembly protein [Medicago truncatula]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/116 (75%), Positives = 99/116 (85%), Gaps = 1/116 (0%)

Query: 34  LIAEAAAYGDDENESLDEKAQKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDC 93
           +IAEAAAYG    E+++E AQKALECPCIADLRSGPCG QFSEAFLCFLKSTSEEKGSDC
Sbjct: 36  VIAEAAAYGSQNTENVEEMAQKALECPCIADLRSGPCGFQFSEAFLCFLKSTSEEKGSDC 95

Query: 94  VHPFVALQNCIKANPSAFSKDILEEDEVKNEEEPPPEYKIIPPVWSKEPRTPKSKL 149
           V+PF+ALQ+CIKANP+AFSKDIL EDE K E E   EYKI+PP WSKE +  KS+L
Sbjct: 96  VNPFIALQSCIKANPNAFSKDILGEDESK-ESEQVQEYKILPPDWSKESQKSKSRL 150

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496122|gb|AFK36127.1| unknown [Medicago truncatula]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 99/116 (85%), Gaps = 1/116 (0%)

Query: 34  LIAEAAAYGDDENESLDEKAQKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDC 93
           +IAEAAAYG    E+++E AQKALECPCIADLRSGPCG QFSEAFLCFLKSTSEEKGS+C
Sbjct: 36  VIAEAAAYGSQNTENVEEMAQKALECPCIADLRSGPCGFQFSEAFLCFLKSTSEEKGSNC 95

Query: 94  VHPFVALQNCIKANPSAFSKDILEEDEVKNEEEPPPEYKIIPPVWSKEPRTPKSKL 149
           V+PF+ALQ+CIKANP+AFSKDIL EDE K E E   EYKI+PP WSKE +  KS+L
Sbjct: 96  VNPFIALQSCIKANPNAFSKDILGEDESK-ESEQVQEYKILPPDWSKESQKSKSRL 150

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560164|ref|XP_003548365.1| PREDICTED: mitochondrial intermembrane space import and assembly protein 40-like [Glycine max]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/142 (63%), Positives = 107/142 (75%), Gaps = 10/142 (7%)

Query: 1   MGQVQS-EAIDQTEGEQSSPSSPDSSQRAASIESLIAEAAAYGDDENESLDEKAQKALEC 59
           MGQ +S EA+ +T+      S+P       S+ES++ EAA YG+   ES++E  QKALEC
Sbjct: 1   MGQTESAEAVAETQTTTHHSSNP------TSVESVLVEAAEYGNQNTESVEEMTQKALEC 54

Query: 60  PCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDIL--E 117
           PC+ADLR+G  G+QFSEAFLCF+KSTSEEKGSDCVHPFVALQ+CIKANP AFSKDIL   
Sbjct: 55  PCVADLRTGSSGSQFSEAFLCFVKSTSEEKGSDCVHPFVALQSCIKANPDAFSKDILGKA 114

Query: 118 EDEVKNEEEPPPEYKIIPPVWS 139
           EDE K E EP  EYKI+PP WS
Sbjct: 115 EDESK-ELEPVQEYKILPPKWS 135

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449508096|ref|XP_004163217.1| PREDICTED: mitochondrial intermembrane space import and assembly protein 40-like [Cucumis sativus]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/128 (67%), Positives = 101/128 (78%), Gaps = 8/128 (6%)

Query: 30  SIESLIAEAAAYGDDENESLDEKAQKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEK 89
           S+ESLIAEA AYG++ NESLD KA +ALECPCIADLR GPCG QFS+AFLCF KST+EEK
Sbjct: 32  SMESLIAEAEAYGNETNESLDAKANRALECPCIADLRKGPCGIQFSDAFLCFFKSTAEEK 91

Query: 90  GSDCVHPFVALQNCIKANPSAFS--------KDILEEDEVKNEEEPPPEYKIIPPVWSKE 141
           GSDCVHPFVALQ+CIKANP+AFS        ++   E E    EEP  +Y++IPP WS+E
Sbjct: 92  GSDCVHPFVALQSCIKANPNAFSKDVLDEDEEEKEMEKEKVKTEEPTQDYRVIPPSWSRE 151

Query: 142 PRTPKSKL 149
           P+ PKSKL
Sbjct: 152 PQIPKSKL 159

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464958|ref|XP_004150196.1| PREDICTED: mitochondrial intermembrane space import and assembly protein 40-like [Cucumis sativus]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/128 (65%), Positives = 100/128 (78%), Gaps = 8/128 (6%)

Query: 30  SIESLIAEAAAYGDDENESLDEKAQKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEK 89
           S+ESLIAEA AYG++ NESLD KA +ALECPCIADLR G CG QFS+AFLCF KST+EEK
Sbjct: 32  SMESLIAEAEAYGNETNESLDAKANRALECPCIADLRKGSCGIQFSDAFLCFFKSTAEEK 91

Query: 90  GSDCVHPFVALQNCIKANPSAFS--------KDILEEDEVKNEEEPPPEYKIIPPVWSKE 141
           GSDCVHPFVALQ+CIKANP+AFS        ++   E E    EEP  +Y+++PP WS+E
Sbjct: 92  GSDCVHPFVALQSCIKANPNAFSKDVLDEDEEEKEMEKEKVKTEEPTQDYRVVPPSWSRE 151

Query: 142 PRTPKSKL 149
           P+ PKSKL
Sbjct: 152 PQIPKSKL 159

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
TAIR|locus:504956369	162	MIA40 "AT5G23395" [Arabidopsis	0.503	0.462	0.779	1.6e-29
CGD|CAL0006108	252	MIA40 [Candida albicans (taxid	0.389	0.230	0.396	1.1e-12
UNIPROTKB|O94030	252	MIA40 "Mitochondrial intermemb	0.389	0.230	0.396	1.1e-12
UNIPROTKB|Q8N4Q1	142	CHCHD4 "Mitochondrial intermem	0.375	0.394	0.5	3.9e-12
MGI|MGI:1919420	139	Chchd4 "coiled-coil-helix-coil	0.375	0.402	0.482	3.9e-12
RGD|1310746	139	Chchd4 "coiled-coil-helix-coil	0.375	0.402	0.482	3.9e-12
ZFIN|ZDB-GENE-041010-149	152	zgc:101803 "zgc:101803" [Danio	0.382	0.375	0.456	1e-11
FB|FBgn0260468	158	CG7950 [Drosophila melanogaste	0.369	0.348	0.436	1.3e-11
ASPGD|ASPL0000100272	283	AN11898 [Emericella nidulans (	0.389	0.204	0.413	1.6e-11
UNIPROTKB|G4NI50	309	MGG_09348 "Mitochondrial inter	0.389	0.187	0.413	1.7e-11

TAIR|locus:504956369 MIA40 "AT5G23395" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 60/77 (77%), Positives = 70/77 (90%)

Query:    41 YGDD--ENESLDEKAQKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFV 98
             YG+D  ENESL+ KAQ+AL+CPCIADLR+G CG+QFSEAFLCFLKST+EEKGSDCV+PFV
Sbjct:    48 YGEDDNENESLEAKAQRALDCPCIADLRNGSCGSQFSEAFLCFLKSTAEEKGSDCVNPFV 107

Query:    99 ALQNCIKANPSAFSKDI 115
             ALQ+CI ANP AFSK +
Sbjct:   108 ALQSCINANPDAFSKSV 124

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0006625 "protein targeting to peroxisome" evidence=IMP

GO:0006626 "protein targeting to mitochondrion" evidence=IMP

CGD|CAL0006108 MIA40 [Candida albicans (taxid:5476)]

 Score = 150 (57.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query:    58 ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDI 115
             +CPC+  +  GPCG +F EAF CF+ S +E KG DC+  F  +++C K  P  +  ++
Sbjct:   151 DCPCLGGMAHGPCGEEFKEAFSCFVFSETEPKGIDCIKKFENMRSCFKRYPEHYKDEL 208

GO:0003674 "molecular_function" evidence=ND

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0045041 "protein import into mitochondrial intermembrane space" evidence=IEA

UNIPROTKB|O94030 MIA40 "Mitochondrial intermembrane space import and assembly protein 40" [Candida albicans SC5314 (taxid:237561)]

 Score = 150 (57.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query:    58 ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDI 115
             +CPC+  +  GPCG +F EAF CF+ S +E KG DC+  F  +++C K  P  +  ++
Sbjct:   151 DCPCLGGMAHGPCGEEFKEAFSCFVFSETEPKGIDCIKKFENMRSCFKRYPEHYKDEL 208

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q8N4Q1 CHCHD4 "Mitochondrial intermembrane space import and assembly protein 40" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 28/56 (50%), Positives = 36/56 (64%)

Query:    59 CPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKD 114
             CPC+  + SGPCG QF  AF CF  ST E KGSDCV  F A+Q C++  P  + ++
Sbjct:    53 CPCLGGMASGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLYPQE 108

GO:0051084 "'de novo' posttranslational protein folding" evidence=IMP

GO:0022417 "protein maturation by protein folding" evidence=IMP

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IMP

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0045041 "protein import into mitochondrial intermembrane space" evidence=IMP

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

MGI|MGI:1919420 Chchd4 "coiled-coil-helix-coiled-coil-helix domain containing 4" [Mus musculus (taxid:10090)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 27/56 (48%), Positives = 36/56 (64%)

Query:    59 CPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKD 114
             CPC+  + SGPCG QF  AF CF  ST + KGSDC+  F A+Q C++  P  + +D
Sbjct:    53 CPCLGGMASGPCGEQFKSAFSCFHYSTEDIKGSDCIDQFRAMQECMQKYPDLYPQD 108

GO:0005739 "mitochondrion" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=ISO

GO:0022417 "protein maturation by protein folding" evidence=ISO

GO:0045041 "protein import into mitochondrial intermembrane space" evidence=ISO

GO:0051084 "'de novo' posttranslational protein folding" evidence=ISO

RGD|1310746 Chchd4 "coiled-coil-helix-coiled-coil-helix domain containing 4" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 27/56 (48%), Positives = 36/56 (64%)

Query:    59 CPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKD 114
             CPC+  + SGPCG QF  AF CF  ST + KGSDC+  F A+Q C++  P  + +D
Sbjct:    53 CPCLGGMASGPCGEQFKSAFSCFHYSTEDIKGSDCIDQFRAMQECMQKYPDLYPQD 108

GO:0005739 "mitochondrion" evidence=ISO

GO:0005758 "mitochondrial intermembrane space" evidence=ISO;ISS

GO:0015035 "protein disulfide oxidoreductase activity" evidence=ISO;ISS

GO:0022417 "protein maturation by protein folding" evidence=ISO;ISS

GO:0045041 "protein import into mitochondrial intermembrane space" evidence=ISO;ISS

GO:0051084 "'de novo' posttranslational protein folding" evidence=ISO;ISS

ZFIN|ZDB-GENE-041010-149 zgc:101803 "zgc:101803" [Danio rerio (taxid:7955)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 26/57 (45%), Positives = 35/57 (61%)

Query:    58 ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKD 114
             +CPC+  + SG CG QF  AF CF  S  E KGSDC+  F+++Q C   +P  F +D
Sbjct:    52 DCPCLGGMASGVCGEQFKSAFTCFHFSQEEVKGSDCLEQFISMQECFHQHPELFPQD 108

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0260468 CG7950 [Drosophila melanogaster (taxid:7227)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 24/55 (43%), Positives = 36/55 (65%)

Query:    59 CPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSK 113
             CPC+  + +GPCG  F EAF CF  ST++ KGSDC   F  +++C +  P+ ++K
Sbjct:    50 CPCLGGMATGPCGVDFREAFSCFQNSTADPKGSDCYDAFTKMRDCFQKYPTVYNK 104

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000100272 AN11898 [Emericella nidulans (taxid:162425)]

 Score = 160 (61.4 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query:    58 ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDI 115
             +CPC+  +  GPCG +F  AF CF+ S  E KG DC+  F A+Q+C +A+P  +  ++
Sbjct:   151 DCPCLGGMAYGPCGEEFRAAFSCFVYSEEEPKGMDCIDKFKAMQDCFRAHPDVYGAEL 208

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|G4NI50 MGG_09348 "Mitochondrial intermembrane space import and assembly protein 40" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 161 (61.7 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query:    58 ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDI 115
             +CPC+  +  GPCG +F  AF CF+ ST E KG DC+  F  +Q+C K  P  +  ++
Sbjct:   165 DCPCLGGMADGPCGEEFKAAFSCFVYSTEEPKGMDCIEKFQGMQDCFKKYPEVYGAEL 222

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
KOG4149	129	consensus Uncharacterized conserved protein [Funct	99.97
PF07802	76	GCK: GCK domain; InterPro: IPR012891 This domain i	98.06
PF06747	35	CHCH: CHCH domain; InterPro: IPR010625 A conserved	96.95

>KOG4149 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=4.9e-33  Score=215.13  Aligned_cols=64  Identities=42%  Similarity=0.928  Sum_probs=59.3

Q ss_pred             HHhhhcCCCcccCCCCCCchHHHHhhhhcccccCCCcCCCCChHhHHHHHHHHHhCccchhhhh
Q 031983           52 KAQKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDI  115 (149)
Q Consensus        52 ~~~iNwdCPCLggMa~GPCG~eFkeAFSCF~~S~eE~KGsDC~e~F~amq~Cm~~~Pd~y~~el  115 (149)
                      ..+|||+|||||||++||||++||+|||||+||++++||+||+++|++||+||++||+.+....
T Consensus        52 DG~INwdCpClg~m~a~pCG~eFreA~sCf~~s~~e~kg~dC~~qf~a~~~C~qk~p~~~~eq~  115 (129)
T KOG4149|consen   52 DGTINWDCPCLGGLVAGPCGEEFREAFSCFKYSDTEPKGGDCVKQFVAMQECMQKYPREEEEQC  115 (129)
T ss_pred             CCceeecCccccccccCccHHHHHHHHhhccccCCCcCccchHHHHHHHHHHHHhCchHHHHHh
Confidence            3579999999999999999999999999999999999999999999999999999997665443

>PF07802 GCK: GCK domain; InterPro: IPR012891 This domain is found in proteins carrying other domains known to be involved in intracellular signalling pathways (such as IPR001806 from INTERPRO) indicating that it might also be involved in these pathways

Probab=98.06  E-value=1.9e-06  Score=61.85  Aligned_cols=61  Identities=21%  Similarity=0.429  Sum_probs=48.8

Q ss_pred             CCCcccCCCCCCchHHHHhhhhccccc---CCCcCCCCChHhHHHHHHHHHhCccchhhhhhhh
Q 031983           58 ECPCIADLRSGPCGAQFSEAFLCFLKS---TSEEKGSDCVHPFVALQNCIKANPSAFSKDILEE  118 (149)
Q Consensus        58 dCPCLggMa~GPCG~eFkeAFSCF~~S---~eE~KGsDC~e~F~amq~Cm~~~Pd~y~~el~e~  118 (149)
                      +|+-..=|..|||++.|..-..|.-..   .+......|.+.|.+|..||..|||+|..-|...
T Consensus         2 ec~fc~FMkgG~Cke~F~awe~C~~ea~~~~~~d~v~kC~e~~~~L~kCM~ahsdYY~P~La~~   65 (76)
T PF07802_consen    2 ECGFCKFMKGGGCKESFTAWEDCVDEAEKNKEEDFVEKCFEATAALRKCMEAHSDYYEPILAAE   65 (76)
T ss_pred             cchHHHHhcCCChhHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence            455566799999999999999997432   2224567999999999999999999998766543

It has 4 highly conserved cysteine residues, suggesting that it can bind zinc ions. Moreover, it is found repeated in some members of this family (such as Q9LMF3 from SWISSPROT); this may indicate that these domains are able to interact with one another, raising the possibility that this domain mediates heterodimerisation.

>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif

Probab=96.95  E-value=0.00071  Score=40.21  Aligned_cols=35  Identities=20%  Similarity=0.511  Sum_probs=31.0

Q ss_pred             chHHHHhhhhcccccCCCcCCCCChHhHHHHHHHHHh
Q 031983           70 CGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKA  106 (149)
Q Consensus        70 CG~eFkeAFSCF~~S~eE~KGsDC~e~F~amq~Cm~~  106 (149)
                      |+.+|+..+.|+..++.+  .+.|.+.|+++++|+++
T Consensus         1 C~~e~~~~~~Cl~~n~~~--~~~C~~~~~~~~~C~~~   35 (35)
T PF06747_consen    1 CAEEMKAYLACLKENNFD--WSKCRKEFKAYKECRMK   35 (35)
T ss_dssp             THHHHHHHHHHHHCH-SS--TCCCHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHCCCc--HHhhHHHHHHHHHHhhC
Confidence            899999999998888875  89999999999999863

Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
2k3j_A	146	The Solution Structure Of Human Mia40 Length = 146		2e-11
2l0y_A	146	Complex Hmia40-Hcox17 Length = 146		1e-10
2zxt_A	465	Crystal Structure Of Tim40MIA40, A DISULFIDE RELAY		3e-10
3a3c_A	451	Crystal Structure Of Tim40MIA40 FUSING MBP, C296S A		3e-08

>pdb|2K3J|A Chain A, The Solution Structure Of Human Mia40 Length = 146

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 34/53 (64%)
Query: 59  CPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAF 111
           CPC+  + SGPCG QF  AF CF  ST E KGSDCV  F A+Q C++  P  +
Sbjct: 57  CPCLGGMASGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLY 109

>pdb|2L0Y|A Chain A, Complex Hmia40-Hcox17 Length = 146

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 33/52 (63%)
Query: 60  PCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAF 111
           PC+  + SGPCG QF  AF CF  ST E KGSDCV  F A+Q C++  P  +
Sbjct: 58  PCLGGMASGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLY 109

>pdb|2ZXT|A Chain A, Crystal Structure Of Tim40MIA40, A DISULFIDE RELAY SYSTEM IN Mitochondria, Solved As Mbp Fusion Protein Length = 465

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 58  ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDI 115
           +CPC+  +  GPCG +F  AF CF+ S +E KG DCV  F  +Q+C +  P  +++ +
Sbjct: 395 DCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQL 452

>pdb|3A3C|A Chain A, Crystal Structure Of Tim40MIA40 FUSING MBP, C296S AND C298S Mutant Length = 451

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 58  ECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDI 115
           + P +  +  GPCG +F  AF CF+ S +E KG DCV  F  +Q+C +  P  +++ +
Sbjct: 393 DSPSLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQL 450

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
2k3j_A	146	Mitochondrial intermembrane space import and assem	3e-21
2zxt_A	465	Maltose-binding periplasmic protein, linker, MITO	8e-14

>2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A Length = 146

 Score = 82.9 bits (204), Expect = 3e-21
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 30  SIESLIAEAAAYGDDENESLDEKAQKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEK 89
           S   L+A+      +E+  +         CPC+  + SGPCG QF  AF CF  ST E K
Sbjct: 28  SSAELVADDPNDPYEEHGLILPNGNINWNCPCLGGMASGPCGEQFKSAFSCFHYSTEEIK 87

Query: 90  GSDCVHPFVALQNCIKANPSAFSKDILEEDEVKNEEEPPPEYKIIPPVWSKEPRTPKSK 148
           GSDCV  F A+Q C++  P  + ++  +E+E + E++P  + +   P+ +   +  +  
Sbjct: 88  GSDCVDQFRAMQECMQKYPDLYPQEDEDEEE-EREKKPAEQAEETAPIEATATKEEEGS 145

>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli} Length = 465

 Score = 66.4 bits (162), Expect = 8e-14
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 1   MGQVQSEAIDQTEGEQSSPSSPDSSQRAA--SIESLIAEAAAYGDDENESLDEKAQKALE 58
           M               S   + D + + A  +  S+    +  G  E     +  +   +
Sbjct: 336 MSAFWYAVRTAVINAASGRQTVDEALKDAQTNSSSVPGRGSIEGRPEFAYNPDTGEINWD 395

Query: 59  CPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILEE 118
           CPC+  +  GPCG +F  AF CF+ S +E KG DCV  F  +Q+C +  P  +++ + E 
Sbjct: 396 CPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKET 455

Query: 119 DEVKNEEEP 127
            +   +EEP
Sbjct: 456 SD---DEEP 461

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
2k3j_A	146	Mitochondrial intermembrane space import and assem	100.0
2zxt_A	465	Maltose-binding periplasmic protein, linker, MITO	99.97

>2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A

Probab=100.00  E-value=1.4e-35  Score=231.98  Aligned_cols=67  Identities=45%  Similarity=0.938  Sum_probs=57.4

Q ss_pred             hhhcCCCcccCCCCCCchHHHHhhhhcccccCCCcCCCCChHhHHHHHHHHHhCccchhhhhhhhhh
Q 031983           54 QKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILEEDE  120 (149)
Q Consensus        54 ~iNwdCPCLggMa~GPCG~eFkeAFSCF~~S~eE~KGsDC~e~F~amq~Cm~~~Pd~y~~el~e~ee  120 (149)
                      +|||+|||||||++||||++||+||+||+||++++||+||+++|++||+||++||++|++++.++++
T Consensus        52 eINwdCPClggma~GPCG~eFreAfsCF~~S~~e~Kg~dC~e~F~~mq~Cm~~~P~~y~~~~~~~~~  118 (146)
T 2k3j_A           52 NINWNCPCLGGMASGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLYPQEDEDEEE  118 (146)
T ss_dssp             SBCTTSHHHHHHTSSSTHHHHHHHHHHHHHHCCSSTTTTTHHHHHHHHHHHHHCSSCC---------
T ss_pred             ceeecCCcccccCCCCcHHHHHHHHHhhccCccccccchHHHHHHHHHHHHHHChHhhccccccccc
Confidence            4999999999999999999999999999999999999999999999999999999999998877665

>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}

Probab=99.97  E-value=1.5e-32  Score=229.76  Aligned_cols=67  Identities=36%  Similarity=0.926  Sum_probs=62.1

Q ss_pred             hhhcCCCcccCCCCCCchHHHHhhhhcccccCCCcCCCCChHhHHHHHHHHHhCccchhhhhhhhhh
Q 031983           54 QKALECPCIADLRSGPCGAQFSEAFLCFLKSTSEEKGSDCVHPFVALQNCIKANPSAFSKDILEEDE  120 (149)
Q Consensus        54 ~iNwdCPCLggMa~GPCG~eFkeAFSCF~~S~eE~KGsDC~e~F~amq~Cm~~~Pd~y~~el~e~ee  120 (149)
                      +|||+||||++|++||||++||+||+||+||++++||+||+++|++||+||++||++|+++|.++++
T Consensus       391 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~  457 (465)
T 2zxt_A          391 EINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKETSD  457 (465)
T ss_dssp             EECTTCGGGTTTTSSTTHHHHHHHHHHHHHCCSSSTTGGGHHHHHHHHHHHTTCTTTCCCCCC----
T ss_pred             eeeecCCccccCCCCCchHHHHHHHHhhhcCccccccchHHHHHHHHHHHHHHCHHHHHHhhhhhhh
Confidence            5999999999999999999999999999999999999999999999999999999999999987665

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00